Query 038852
Match_columns 851
No_of_seqs 1328 out of 3406
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 03:57:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038852.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038852hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 5.6E-57 1.2E-61 552.1 47.5 536 25-601 139-679 (857)
2 PLN03218 maturation of RBCL 1; 100.0 7.9E-55 1.7E-59 523.4 60.9 445 105-564 371-841 (1060)
3 PLN03218 maturation of RBCL 1; 100.0 1.1E-54 2.3E-59 522.4 60.2 448 103-563 436-908 (1060)
4 PLN03081 pentatricopeptide (PP 100.0 6.8E-54 1.5E-58 512.9 49.6 442 105-573 124-567 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 2.5E-52 5.4E-57 511.1 54.0 488 27-574 242-731 (857)
6 PLN03081 pentatricopeptide (PP 100.0 3.2E-51 7E-56 489.8 51.3 441 104-570 87-529 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.4E-28 3E-33 305.6 59.9 432 108-562 435-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 8.1E-28 1.8E-32 298.7 60.0 438 106-566 399-868 (899)
9 KOG4626 O-linked N-acetylgluco 100.0 5.3E-27 1.1E-31 249.0 35.6 439 106-569 50-490 (966)
10 PRK11447 cellulose synthase su 100.0 1.2E-23 2.5E-28 264.4 56.8 436 109-563 274-739 (1157)
11 KOG4626 O-linked N-acetylgluco 100.0 3E-25 6.5E-30 235.8 34.5 382 105-510 117-500 (966)
12 PRK11447 cellulose synthase su 99.9 9.2E-23 2E-27 256.4 58.0 445 107-569 115-705 (1157)
13 TIGR00990 3a0801s09 mitochondr 99.9 1.5E-22 3.3E-27 239.2 53.8 428 107-567 130-600 (615)
14 TIGR00990 3a0801s09 mitochondr 99.9 5.9E-22 1.3E-26 234.2 54.0 404 141-564 129-571 (615)
15 PRK15174 Vi polysaccharide exp 99.9 1.5E-20 3.2E-25 221.7 51.3 339 103-462 41-384 (656)
16 PRK15174 Vi polysaccharide exp 99.9 1.4E-20 3.1E-25 221.7 49.5 366 142-527 45-418 (656)
17 KOG2002 TPR-containing nuclear 99.9 5.9E-21 1.3E-25 214.2 42.6 448 105-570 271-751 (1018)
18 PRK10049 pgaA outer membrane p 99.9 4.7E-20 1E-24 222.0 52.3 159 108-273 19-177 (765)
19 PRK11788 tetratricopeptide rep 99.9 8.1E-21 1.8E-25 212.7 37.1 302 183-536 43-354 (389)
20 PRK11788 tetratricopeptide rep 99.9 7.7E-21 1.7E-25 212.9 36.7 300 150-466 46-354 (389)
21 PRK10049 pgaA outer membrane p 99.9 2.4E-19 5.2E-24 215.8 51.8 421 137-570 13-462 (765)
22 KOG2002 TPR-containing nuclear 99.9 1.3E-19 2.9E-24 203.5 42.8 443 105-564 308-798 (1018)
23 PRK09782 bacteriophage N4 rece 99.9 3.3E-18 7.1E-23 206.0 56.3 231 320-569 481-711 (987)
24 PRK14574 hmsH outer membrane p 99.9 2.4E-18 5.2E-23 203.2 53.3 451 106-571 36-520 (822)
25 KOG2003 TPR repeat-containing 99.8 1.3E-18 2.9E-23 179.0 29.5 425 107-550 204-709 (840)
26 PRK09782 bacteriophage N4 rece 99.8 2.3E-16 5.1E-21 190.1 53.1 427 110-563 188-739 (987)
27 PRK14574 hmsH outer membrane p 99.8 3.9E-16 8.4E-21 184.6 49.6 412 148-569 43-484 (822)
28 KOG1155 Anaphase-promoting com 99.8 2E-16 4.2E-21 164.8 40.7 418 105-564 79-553 (559)
29 KOG2003 TPR repeat-containing 99.8 9E-17 1.9E-21 165.7 34.4 399 110-528 243-721 (840)
30 KOG2076 RNA polymerase III tra 99.8 9.2E-16 2E-20 172.0 45.1 376 105-493 140-554 (895)
31 KOG0547 Translocase of outer m 99.8 3.4E-16 7.3E-21 163.9 37.1 400 106-529 117-566 (606)
32 KOG0495 HAT repeat protein [RN 99.8 1.6E-14 3.5E-19 155.8 49.4 422 118-562 390-878 (913)
33 KOG2076 RNA polymerase III tra 99.8 7.5E-16 1.6E-20 172.8 40.9 379 140-527 140-553 (895)
34 KOG0495 HAT repeat protein [RN 99.8 2.1E-14 4.6E-19 154.9 50.2 402 109-530 411-881 (913)
35 KOG1915 Cell cycle control pro 99.8 1.3E-14 2.9E-19 151.1 45.4 432 116-569 85-541 (677)
36 KOG0547 Translocase of outer m 99.8 3.1E-15 6.8E-20 156.7 36.7 398 141-563 117-565 (606)
37 KOG2047 mRNA splicing factor [ 99.8 8E-14 1.7E-18 150.4 45.3 499 3-559 108-718 (835)
38 KOG1915 Cell cycle control pro 99.8 1.6E-13 3.4E-18 143.2 45.6 407 108-530 111-537 (677)
39 KOG3785 Uncharacterized conser 99.7 2.9E-15 6.3E-20 150.7 31.2 438 111-584 29-510 (557)
40 KOG1126 DNA-binding cell divis 99.7 6.8E-16 1.5E-20 168.4 29.0 287 226-531 334-622 (638)
41 KOG1155 Anaphase-promoting com 99.7 3.1E-14 6.7E-19 148.6 39.1 311 182-528 234-552 (559)
42 KOG1126 DNA-binding cell divis 99.7 1.2E-15 2.7E-20 166.4 27.8 292 153-465 333-626 (638)
43 KOG4422 Uncharacterized conser 99.7 3E-13 6.5E-18 139.6 41.6 429 109-562 120-588 (625)
44 KOG1173 Anaphase-promoting com 99.7 9.7E-14 2.1E-18 148.6 38.8 443 105-568 17-522 (611)
45 TIGR00540 hemY_coli hemY prote 99.7 1.6E-13 3.4E-18 153.9 38.6 292 151-458 96-398 (409)
46 KOG4422 Uncharacterized conser 99.7 5.4E-13 1.2E-17 137.7 37.5 403 139-569 116-556 (625)
47 TIGR00540 hemY_coli hemY prote 99.7 5E-13 1.1E-17 149.7 38.9 296 186-491 95-396 (409)
48 KOG1156 N-terminal acetyltrans 99.7 2E-12 4.2E-17 140.7 41.2 449 102-566 5-513 (700)
49 PF13429 TPR_15: Tetratricopep 99.7 3.2E-16 6.8E-21 166.8 12.1 260 218-492 15-275 (280)
50 PRK10747 putative protoheme IX 99.7 5.7E-13 1.2E-17 148.5 38.4 283 152-456 97-387 (398)
51 KOG2047 mRNA splicing factor [ 99.7 9.8E-12 2.1E-16 134.6 45.6 444 107-563 105-614 (835)
52 PF13429 TPR_15: Tetratricopep 99.6 6.8E-16 1.5E-20 164.2 12.8 262 144-422 13-275 (280)
53 PRK10747 putative protoheme IX 99.6 7.4E-13 1.6E-17 147.6 37.4 290 111-423 91-389 (398)
54 COG2956 Predicted N-acetylgluc 99.6 1.7E-12 3.6E-17 130.2 32.5 292 114-422 45-345 (389)
55 COG2956 Predicted N-acetylgluc 99.6 1.4E-12 3E-17 130.7 30.8 292 224-527 48-345 (389)
56 KOG1173 Anaphase-promoting com 99.6 2.9E-12 6.2E-17 137.5 33.0 283 210-509 243-531 (611)
57 KOG4162 Predicted calmodulin-b 99.6 2.6E-11 5.5E-16 134.7 40.2 445 115-574 295-793 (799)
58 COG3071 HemY Uncharacterized e 99.6 1.1E-11 2.5E-16 128.2 34.7 288 115-423 95-389 (400)
59 KOG3785 Uncharacterized conser 99.6 2.2E-12 4.7E-17 130.2 27.6 392 110-538 63-497 (557)
60 KOG1129 TPR repeat-containing 99.6 7.7E-13 1.7E-17 132.2 24.2 230 179-422 227-456 (478)
61 KOG1174 Anaphase-promoting com 99.6 1.9E-10 4.1E-15 118.8 41.5 394 107-530 100-501 (564)
62 KOG2376 Signal recognition par 99.6 5.9E-11 1.3E-15 128.1 39.2 428 105-561 13-517 (652)
63 KOG1156 N-terminal acetyltrans 99.6 2.1E-10 4.5E-15 125.2 42.6 395 114-528 51-510 (700)
64 PRK12370 invasion protein regu 99.5 4.1E-12 8.9E-17 147.8 31.8 252 189-460 275-536 (553)
65 KOG1129 TPR repeat-containing 99.5 7.2E-13 1.6E-17 132.4 21.4 238 212-462 224-461 (478)
66 PRK12370 invasion protein regu 99.5 2E-12 4.4E-17 150.4 28.9 252 225-495 275-536 (553)
67 KOG1174 Anaphase-promoting com 99.5 4.4E-10 9.6E-15 116.1 41.0 431 110-569 49-505 (564)
68 KOG0548 Molecular co-chaperone 99.5 3.6E-11 7.9E-16 128.8 34.1 398 108-530 6-456 (539)
69 COG3071 HemY Uncharacterized e 99.5 2.3E-10 5.1E-15 118.6 38.6 290 224-562 97-388 (400)
70 KOG0548 Molecular co-chaperone 99.5 5.7E-11 1.2E-15 127.3 34.9 381 102-512 34-471 (539)
71 PF12569 NARP1: NMDA receptor- 99.5 9.8E-11 2.1E-15 131.8 35.8 296 146-491 11-331 (517)
72 KOG4162 Predicted calmodulin-b 99.5 6.4E-10 1.4E-14 123.8 40.7 415 107-530 326-784 (799)
73 TIGR02521 type_IV_pilW type IV 99.5 2.2E-11 4.7E-16 125.1 27.9 197 140-342 32-229 (234)
74 KOG1840 Kinesin light chain [C 99.5 5.4E-12 1.2E-16 140.0 24.6 211 247-457 200-436 (508)
75 KOG1127 TPR repeat-containing 99.5 8.4E-11 1.8E-15 133.1 33.3 428 119-560 473-948 (1238)
76 TIGR02521 type_IV_pilW type IV 99.5 2.8E-11 6.1E-16 124.2 27.4 201 105-310 32-232 (234)
77 KOG1840 Kinesin light chain [C 99.5 1.7E-11 3.7E-16 136.1 27.0 248 211-458 199-478 (508)
78 PF12569 NARP1: NMDA receptor- 99.5 1.9E-10 4.2E-15 129.4 35.0 309 109-458 9-333 (517)
79 KOG0624 dsRNA-activated protei 99.5 1.8E-09 4E-14 109.1 37.8 316 107-461 41-372 (504)
80 KOG0624 dsRNA-activated protei 99.4 1.1E-09 2.4E-14 110.6 35.0 301 181-495 44-371 (504)
81 KOG1127 TPR repeat-containing 99.4 3.2E-10 6.9E-15 128.6 31.1 444 107-562 495-994 (1238)
82 KOG3617 WD40 and TPR repeat-co 99.4 1.4E-09 3E-14 120.5 34.8 377 116-559 740-1169(1416)
83 PRK11189 lipoprotein NlpI; Pro 99.4 2E-10 4.3E-15 122.7 27.2 223 153-385 40-265 (296)
84 KOG2376 Signal recognition par 99.4 2.2E-08 4.8E-13 108.5 40.8 401 102-526 44-517 (652)
85 PRK11189 lipoprotein NlpI; Pro 99.4 3.8E-10 8.2E-15 120.6 27.6 213 317-547 65-283 (296)
86 KOG1125 TPR repeat-containing 99.4 6.5E-11 1.4E-15 127.9 21.0 257 181-453 291-565 (579)
87 cd05804 StaR_like StaR_like; a 99.3 4.6E-09 9.9E-14 116.1 36.5 308 139-458 6-335 (355)
88 KOG4340 Uncharacterized conser 99.3 2.1E-09 4.5E-14 106.7 29.3 416 107-563 13-442 (459)
89 KOG1125 TPR repeat-containing 99.3 8.3E-11 1.8E-15 127.1 21.1 257 217-489 291-566 (579)
90 cd05804 StaR_like StaR_like; a 99.3 1E-08 2.3E-13 113.2 38.1 166 175-344 6-176 (355)
91 KOG3617 WD40 and TPR repeat-co 99.3 1.4E-09 3E-14 120.6 28.6 357 138-563 725-1108(1416)
92 COG3063 PilF Tfp pilus assembl 99.3 2.1E-09 4.6E-14 103.8 25.4 199 317-528 36-235 (250)
93 PRK04841 transcriptional regul 99.3 1E-08 2.2E-13 127.9 39.1 348 219-566 382-762 (903)
94 KOG3616 Selective LIM binding 99.3 5.7E-09 1.2E-13 114.3 30.8 291 216-560 620-933 (1636)
95 PRK04841 transcriptional regul 99.3 1.8E-08 3.9E-13 125.8 39.8 313 181-494 415-760 (903)
96 KOG4340 Uncharacterized conser 99.3 6.2E-09 1.3E-13 103.4 27.7 286 103-420 43-335 (459)
97 COG3063 PilF Tfp pilus assembl 99.3 2.3E-09 5.1E-14 103.5 23.4 206 356-569 35-241 (250)
98 KOG3616 Selective LIM binding 99.3 8E-09 1.7E-13 113.1 30.2 57 508-567 971-1027(1636)
99 KOG2053 Mitochondrial inherita 99.2 6.5E-07 1.4E-11 101.8 46.2 228 110-346 15-256 (932)
100 KOG1914 mRNA cleavage and poly 99.2 3.8E-07 8.3E-12 98.0 42.0 412 136-566 17-503 (656)
101 KOG4318 Bicoid mRNA stability 99.2 4.9E-08 1.1E-12 110.1 32.2 301 243-562 201-592 (1088)
102 KOG1914 mRNA cleavage and poly 99.2 2.4E-06 5.2E-11 92.0 43.4 438 105-561 21-536 (656)
103 PLN02789 farnesyltranstransfer 99.2 2.1E-08 4.5E-13 107.1 27.7 216 140-407 38-267 (320)
104 PLN02789 farnesyltranstransfer 99.2 3.1E-08 6.7E-13 105.7 28.8 144 110-259 42-189 (320)
105 KOG0985 Vesicle coat protein c 99.1 3.5E-07 7.5E-12 104.1 37.3 272 110-443 1054-1326(1666)
106 KOG0985 Vesicle coat protein c 99.1 3.2E-07 7E-12 104.3 36.2 321 174-560 983-1304(1666)
107 KOG1070 rRNA processing protei 99.1 4.4E-08 9.5E-13 115.1 28.2 241 196-451 1445-1692(1710)
108 KOG1070 rRNA processing protei 99.1 3.5E-08 7.7E-13 115.8 27.4 219 126-350 1446-1668(1710)
109 KOG4318 Bicoid mRNA stability 99.1 2.1E-08 4.6E-13 113.0 23.8 273 126-445 12-286 (1088)
110 KOG1128 Uncharacterized conser 99.1 9.1E-08 2E-12 106.4 27.2 215 249-494 401-616 (777)
111 KOG2053 Mitochondrial inherita 99.0 1.4E-05 3.1E-10 91.2 44.1 197 111-313 50-258 (932)
112 KOG1128 Uncharacterized conser 99.0 3E-07 6.4E-12 102.4 29.2 216 214-459 401-616 (777)
113 PF04733 Coatomer_E: Coatomer 99.0 9.1E-09 2E-13 108.4 16.9 249 257-529 12-265 (290)
114 TIGR03302 OM_YfiO outer membra 99.0 1.8E-07 3.8E-12 96.8 24.5 102 139-240 33-144 (235)
115 PF04733 Coatomer_E: Coatomer 99.0 1.1E-08 2.4E-13 107.9 15.1 257 110-388 7-268 (290)
116 TIGR03302 OM_YfiO outer membra 98.9 1.8E-07 3.9E-12 96.8 22.8 190 173-385 31-232 (235)
117 KOG0550 Molecular chaperone (D 98.9 7E-07 1.5E-11 93.2 25.6 295 138-460 48-351 (486)
118 KOG0550 Molecular chaperone (D 98.9 6E-07 1.3E-11 93.7 24.7 287 106-424 51-350 (486)
119 KOG1130 Predicted G-alpha GTPa 98.9 1.3E-08 2.9E-13 105.2 12.3 277 106-382 19-341 (639)
120 PRK14720 transcript cleavage f 98.9 9.4E-07 2E-11 104.3 28.8 151 318-511 118-268 (906)
121 PRK14720 transcript cleavage f 98.9 6.5E-07 1.4E-11 105.6 27.1 132 138-275 30-178 (906)
122 PF13041 PPR_2: PPR repeat fam 98.9 7.3E-09 1.6E-13 78.1 6.7 50 209-258 1-50 (50)
123 PF13041 PPR_2: PPR repeat fam 98.9 6.4E-09 1.4E-13 78.4 6.4 50 393-442 1-50 (50)
124 COG5010 TadD Flp pilus assembl 98.9 3.9E-07 8.4E-12 90.4 20.5 164 138-308 66-229 (257)
125 PRK10370 formate-dependent nit 98.8 5.6E-07 1.2E-11 89.7 21.1 121 188-312 52-175 (198)
126 KOG3081 Vesicle coat complex C 98.8 2.4E-06 5.2E-11 84.6 24.5 152 323-493 115-270 (299)
127 PF07079 DUF1347: Protein of u 98.8 0.00039 8.4E-09 74.1 42.8 440 112-562 14-522 (549)
128 KOG1130 Predicted G-alpha GTPa 98.8 2.3E-07 5E-12 96.2 18.0 297 146-459 24-344 (639)
129 COG5010 TadD Flp pilus assembl 98.8 7.4E-07 1.6E-11 88.4 20.9 160 179-343 70-229 (257)
130 COG5107 RNA14 Pre-mRNA 3'-end 98.7 0.00014 3.1E-09 76.9 35.7 410 136-567 39-534 (660)
131 PRK15359 type III secretion sy 98.7 4.9E-07 1.1E-11 85.3 16.4 123 125-256 14-136 (144)
132 PRK15359 type III secretion sy 98.7 5.6E-07 1.2E-11 84.9 16.6 117 159-284 13-129 (144)
133 PRK15179 Vi polysaccharide bio 98.7 6.2E-06 1.3E-10 96.9 28.4 135 173-311 84-218 (694)
134 PRK10370 formate-dependent nit 98.7 1.7E-06 3.7E-11 86.2 20.6 118 295-424 53-173 (198)
135 KOG3081 Vesicle coat complex C 98.7 4.6E-06 9.9E-11 82.6 22.2 250 253-528 15-270 (299)
136 KOG3060 Uncharacterized conser 98.7 7.5E-06 1.6E-10 80.6 22.7 189 118-312 26-222 (289)
137 PRK15179 Vi polysaccharide bio 98.6 5.2E-06 1.1E-10 97.5 25.1 144 280-436 85-228 (694)
138 COG4783 Putative Zn-dependent 98.6 1.3E-05 2.8E-10 86.2 25.3 183 355-565 273-455 (484)
139 COG4783 Putative Zn-dependent 98.6 7.1E-06 1.5E-10 88.2 23.3 144 144-310 311-454 (484)
140 KOG3060 Uncharacterized conser 98.6 8.3E-05 1.8E-09 73.4 26.9 163 249-424 55-220 (289)
141 COG5107 RNA14 Pre-mRNA 3'-end 98.5 0.0012 2.6E-08 70.2 35.9 408 105-529 43-531 (660)
142 KOG2041 WD40 repeat protein [G 98.5 9.5E-05 2.1E-09 81.8 27.5 325 173-544 690-1066(1189)
143 COG3898 Uncharacterized membra 98.5 0.00058 1.3E-08 71.3 31.7 286 116-459 96-392 (531)
144 PF14938 SNAP: Soluble NSF att 98.5 9.3E-06 2E-10 86.2 19.6 222 154-422 30-264 (282)
145 TIGR02552 LcrH_SycD type III s 98.4 1E-05 2.2E-10 75.5 15.7 96 177-275 19-114 (135)
146 KOG1258 mRNA processing protei 98.4 0.00071 1.5E-08 75.1 31.8 352 138-520 44-420 (577)
147 KOG1258 mRNA processing protei 98.4 0.0047 1E-07 68.8 37.3 118 119-240 60-180 (577)
148 TIGR02552 LcrH_SycD type III s 98.4 7.8E-06 1.7E-10 76.3 13.9 112 197-312 5-116 (135)
149 PF14938 SNAP: Soluble NSF att 98.4 0.00011 2.4E-09 77.9 24.3 186 190-422 30-223 (282)
150 KOG2041 WD40 repeat protein [G 98.4 0.00062 1.3E-08 75.6 29.8 144 111-271 670-821 (1189)
151 COG3898 Uncharacterized membra 98.3 0.0029 6.4E-08 66.2 32.7 289 188-498 97-396 (531)
152 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 3.1E-05 6.6E-10 84.5 18.6 122 180-308 174-295 (395)
153 KOG1941 Acetylcholine receptor 98.3 0.00024 5.2E-09 73.3 22.7 241 112-382 14-272 (518)
154 PF09976 TPR_21: Tetratricopep 98.3 3.6E-05 7.8E-10 72.8 16.0 117 188-306 24-143 (145)
155 PRK15363 pathogenicity island 98.2 2E-05 4.4E-10 73.3 13.2 99 175-276 35-133 (157)
156 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 5.5E-05 1.2E-09 82.5 18.3 121 286-421 174-294 (395)
157 PF09976 TPR_21: Tetratricopep 98.2 3.8E-05 8.3E-10 72.6 15.2 128 141-272 14-144 (145)
158 PRK02603 photosystem I assembl 98.2 8.4E-05 1.8E-09 72.6 17.7 93 175-268 35-128 (172)
159 KOG1538 Uncharacterized conser 98.2 0.00016 3.4E-09 79.5 20.7 38 231-271 620-657 (1081)
160 COG0457 NrfG FOG: TPR repeat [ 98.2 0.01 2.2E-07 59.6 33.2 227 152-385 36-265 (291)
161 PF07079 DUF1347: Protein of u 98.1 0.021 4.5E-07 61.4 41.9 409 110-540 52-530 (549)
162 cd00189 TPR Tetratricopeptide 98.1 3.7E-05 8.1E-10 65.5 11.9 91 180-273 5-95 (100)
163 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.00011 2.3E-09 66.6 15.1 100 142-241 5-106 (119)
164 PRK10866 outer membrane biogen 98.1 0.00062 1.3E-08 70.2 22.1 183 178-382 35-238 (243)
165 PRK10866 outer membrane biogen 98.1 0.0011 2.3E-08 68.5 23.7 185 210-421 31-238 (243)
166 CHL00033 ycf3 photosystem I as 98.1 5.7E-05 1.2E-09 73.5 13.7 82 175-257 35-117 (168)
167 KOG0553 TPR repeat-containing 98.1 9.1E-05 2E-09 75.2 15.1 92 219-312 89-180 (304)
168 PF12854 PPR_1: PPR repeat 98.1 5.4E-06 1.2E-10 56.3 4.3 32 170-201 2-33 (34)
169 KOG2796 Uncharacterized conser 98.1 0.0011 2.4E-08 65.7 21.8 138 282-424 178-315 (366)
170 KOG1920 IkappaB kinase complex 98.1 0.002 4.3E-08 76.4 27.4 82 437-527 972-1053(1265)
171 PRK02603 photosystem I assembl 98.1 0.00022 4.9E-09 69.6 17.1 95 210-305 34-130 (172)
172 KOG2796 Uncharacterized conser 98.0 0.0029 6.3E-08 62.9 24.1 135 248-388 179-318 (366)
173 KOG2300 Uncharacterized conser 98.0 0.032 7E-07 60.3 39.9 451 106-558 9-550 (629)
174 PF04840 Vps16_C: Vps16, C-ter 98.0 0.0077 1.7E-07 64.4 29.7 110 358-491 179-288 (319)
175 KOG2114 Vacuolar assembly/sort 98.0 0.0032 7E-08 72.0 27.4 181 104-307 334-516 (933)
176 PF05843 Suf: Suppressor of fo 98.0 8E-05 1.7E-09 78.7 14.2 132 140-275 2-136 (280)
177 PLN03088 SGT1, suppressor of 98.0 0.00013 2.9E-09 79.9 16.3 92 147-242 10-101 (356)
178 cd00189 TPR Tetratricopeptide 98.0 8.5E-05 1.8E-09 63.2 12.0 95 142-240 3-97 (100)
179 PF10345 Cohesin_load: Cohesin 98.0 0.071 1.5E-06 63.2 40.3 416 136-563 27-562 (608)
180 PF12895 Apc3: Anaphase-promot 98.0 1.3E-05 2.7E-10 68.0 6.4 80 189-270 3-82 (84)
181 PF12854 PPR_1: PPR repeat 98.0 8.9E-06 1.9E-10 55.2 4.3 32 425-456 2-33 (34)
182 PLN03088 SGT1, suppressor of 98.0 0.00014 3.1E-09 79.6 16.2 96 180-278 7-102 (356)
183 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00017 3.7E-09 65.2 14.3 102 177-278 4-108 (119)
184 KOG1538 Uncharacterized conser 98.0 0.00047 1E-08 75.9 19.5 101 105-236 557-657 (1081)
185 PF12895 Apc3: Anaphase-promot 98.0 1.2E-05 2.6E-10 68.1 6.1 82 152-236 2-83 (84)
186 CHL00033 ycf3 photosystem I as 98.0 9.8E-05 2.1E-09 71.8 13.2 96 139-236 35-138 (168)
187 PRK15363 pathogenicity island 98.0 0.00031 6.6E-09 65.5 15.5 98 211-310 35-132 (157)
188 KOG1920 IkappaB kinase complex 98.0 0.0061 1.3E-07 72.5 29.2 341 103-492 676-1053(1265)
189 KOG0553 TPR repeat-containing 98.0 0.00011 2.4E-09 74.6 13.2 94 182-278 88-181 (304)
190 KOG1941 Acetylcholine receptor 98.0 0.00021 4.5E-09 73.7 15.2 212 317-528 44-274 (518)
191 PF04840 Vps16_C: Vps16, C-ter 97.9 0.013 2.9E-07 62.6 28.9 111 397-527 179-289 (319)
192 COG0457 NrfG FOG: TPR repeat [ 97.9 0.034 7.4E-07 55.7 33.6 203 317-529 60-265 (291)
193 PF05843 Suf: Suppressor of fo 97.9 0.00021 4.5E-09 75.6 14.1 132 176-310 2-136 (280)
194 PF13525 YfiO: Outer membrane 97.9 0.0012 2.7E-08 66.2 18.6 67 176-242 6-73 (203)
195 PF13525 YfiO: Outer membrane 97.8 0.0024 5.3E-08 64.1 20.3 191 139-375 5-197 (203)
196 PF10300 DUF3808: Protein of u 97.8 0.023 5.1E-07 64.6 29.7 171 318-493 190-375 (468)
197 COG4700 Uncharacterized protei 97.8 0.0045 9.7E-08 58.4 19.0 131 136-269 86-216 (251)
198 KOG2280 Vacuolar assembly/sort 97.7 0.043 9.4E-07 62.5 29.8 337 179-561 441-796 (829)
199 KOG0307 Vesicle coat complex C 97.7 0.083 1.8E-06 62.9 33.0 90 469-564 605-694 (1049)
200 KOG1585 Protein required for f 97.7 0.0023 4.9E-08 63.0 17.0 95 359-454 153-251 (308)
201 PRK10153 DNA-binding transcrip 97.7 0.0019 4.1E-08 73.9 19.6 120 191-314 358-486 (517)
202 COG4105 ComL DNA uptake lipopr 97.7 0.012 2.6E-07 59.3 22.5 192 356-569 34-238 (254)
203 KOG2280 Vacuolar assembly/sort 97.7 0.041 8.8E-07 62.7 28.7 91 106-199 439-531 (829)
204 PF08631 SPO22: Meiosis protei 97.7 0.022 4.7E-07 60.3 25.9 130 324-459 43-186 (278)
205 COG4235 Cytochrome c biogenesi 97.7 0.0015 3.3E-08 67.0 16.0 117 192-312 139-258 (287)
206 PF10345 Cohesin_load: Cohesin 97.7 0.24 5.2E-06 58.7 44.2 163 109-272 64-251 (608)
207 PF13414 TPR_11: TPR repeat; P 97.7 0.00022 4.8E-09 57.6 8.1 64 175-240 3-67 (69)
208 PRK10153 DNA-binding transcrip 97.7 0.0041 9E-08 71.2 21.0 137 209-348 335-485 (517)
209 KOG2610 Uncharacterized conser 97.7 0.028 6E-07 58.0 24.2 158 185-345 113-276 (491)
210 KOG1585 Protein required for f 97.6 0.0077 1.7E-07 59.4 19.4 213 178-419 34-251 (308)
211 PF10037 MRP-S27: Mitochondria 97.6 0.0039 8.4E-08 68.6 19.3 120 245-369 65-186 (429)
212 COG4105 ComL DNA uptake lipopr 97.6 0.016 3.5E-07 58.3 21.8 64 321-387 172-235 (254)
213 PF13281 DUF4071: Domain of un 97.6 0.014 2.9E-07 63.0 22.7 173 355-530 140-335 (374)
214 COG4235 Cytochrome c biogenesi 97.6 0.0024 5.3E-08 65.5 16.0 117 157-278 140-259 (287)
215 KOG2062 26S proteasome regulat 97.6 0.076 1.7E-06 60.3 28.5 159 144-311 64-240 (929)
216 PF08631 SPO22: Meiosis protei 97.6 0.056 1.2E-06 57.1 27.1 159 114-275 3-186 (278)
217 KOG2114 Vacuolar assembly/sort 97.5 0.012 2.6E-07 67.6 21.9 142 111-272 375-516 (933)
218 KOG2300 Uncharacterized conser 97.5 0.22 4.7E-06 54.2 37.1 416 145-563 13-513 (629)
219 PF13414 TPR_11: TPR repeat; P 97.5 0.00041 8.9E-09 56.0 7.7 65 210-275 2-67 (69)
220 PF12688 TPR_5: Tetratrico pep 97.5 0.0041 8.9E-08 56.0 14.6 91 289-382 9-101 (120)
221 PF10300 DUF3808: Protein of u 97.5 0.31 6.7E-06 55.5 34.3 167 284-458 191-375 (468)
222 COG4700 Uncharacterized protei 97.5 0.0063 1.4E-07 57.5 15.9 132 105-239 90-221 (251)
223 PRK10803 tol-pal system protei 97.5 0.0025 5.4E-08 66.2 14.9 91 150-240 154-246 (263)
224 KOG2610 Uncharacterized conser 97.5 0.059 1.3E-06 55.7 23.8 159 220-382 112-273 (491)
225 COG2909 MalT ATP-dependent tra 97.5 0.17 3.6E-06 59.3 30.2 233 185-420 425-684 (894)
226 KOG0128 RNA-binding protein SA 97.4 0.42 9E-06 55.5 34.5 131 107-241 116-261 (881)
227 PF13432 TPR_16: Tetratricopep 97.4 0.00048 1E-08 54.9 6.8 56 147-204 5-60 (65)
228 PRK15331 chaperone protein Sic 97.4 0.003 6.5E-08 59.3 12.7 92 180-274 42-133 (165)
229 PF12688 TPR_5: Tetratrico pep 97.4 0.0077 1.7E-07 54.3 15.0 92 217-308 7-102 (120)
230 PF04184 ST7: ST7 protein; In 97.4 0.018 4E-07 62.9 20.3 60 399-458 263-323 (539)
231 KOG0128 RNA-binding protein SA 97.4 0.46 1E-05 55.2 37.5 401 136-560 110-559 (881)
232 PF14559 TPR_19: Tetratricopep 97.4 0.00062 1.4E-08 54.7 7.3 52 187-240 3-54 (68)
233 KOG2396 HAT (Half-A-TPR) repea 97.4 0.33 7E-06 53.3 40.2 409 124-564 91-559 (568)
234 PF13432 TPR_16: Tetratricopep 97.4 0.00059 1.3E-08 54.3 6.9 59 181-241 3-61 (65)
235 KOG1550 Extracellular protein 97.4 0.081 1.8E-06 61.7 27.2 147 120-276 228-394 (552)
236 PRK10803 tol-pal system protei 97.4 0.0031 6.7E-08 65.5 13.7 94 291-387 153-248 (263)
237 KOG0543 FKBP-type peptidyl-pro 97.3 0.0033 7.2E-08 66.9 13.7 93 146-240 215-320 (397)
238 KOG2066 Vacuolar assembly/sort 97.3 0.097 2.1E-06 60.1 25.6 159 104-275 356-534 (846)
239 TIGR00756 PPR pentatricopeptid 97.3 0.00035 7.6E-09 47.6 4.3 33 397-429 2-34 (35)
240 KOG1586 Protein required for f 97.3 0.15 3.3E-06 50.2 23.1 17 443-459 167-183 (288)
241 COG2909 MalT ATP-dependent tra 97.3 0.56 1.2E-05 55.1 31.6 234 255-491 424-685 (894)
242 KOG1550 Extracellular protein 97.3 0.084 1.8E-06 61.6 25.9 147 155-311 228-394 (552)
243 KOG1924 RhoA GTPase effector D 97.3 0.57 1.2E-05 53.7 38.4 8 505-512 458-465 (1102)
244 PF10037 MRP-S27: Mitochondria 97.3 0.0043 9.3E-08 68.3 14.2 121 427-547 63-185 (429)
245 PRK11906 transcriptional regul 97.3 0.032 6.9E-07 61.1 20.4 151 190-343 273-434 (458)
246 KOG0890 Protein kinase of the 97.3 0.17 3.7E-06 65.1 29.0 328 144-494 1388-1731(2382)
247 TIGR00756 PPR pentatricopeptid 97.2 0.00054 1.2E-08 46.6 4.5 33 213-245 2-34 (35)
248 COG1747 Uncharacterized N-term 97.2 0.21 4.6E-06 54.6 25.8 96 174-275 65-160 (711)
249 KOG1924 RhoA GTPase effector D 97.2 0.52 1.1E-05 54.0 29.7 15 156-170 86-100 (1102)
250 PLN03098 LPA1 LOW PSII ACCUMUL 97.2 0.028 6E-07 61.4 19.3 69 136-204 72-141 (453)
251 COG1729 Uncharacterized protei 97.2 0.0055 1.2E-07 62.2 13.0 101 107-207 144-247 (262)
252 COG4785 NlpI Lipoprotein NlpI, 97.2 0.013 2.8E-07 56.8 14.6 66 175-242 99-164 (297)
253 PRK15331 chaperone protein Sic 97.2 0.019 4E-07 54.1 15.4 95 214-310 40-134 (165)
254 COG4785 NlpI Lipoprotein NlpI, 97.2 0.05 1.1E-06 52.8 18.5 183 189-383 79-264 (297)
255 PF13281 DUF4071: Domain of un 97.2 0.051 1.1E-06 58.7 20.8 32 429-460 304-335 (374)
256 PRK11906 transcriptional regul 97.2 0.016 3.5E-07 63.3 17.1 149 228-384 275-435 (458)
257 PF04184 ST7: ST7 protein; In 97.2 0.061 1.3E-06 58.9 21.2 146 106-255 170-340 (539)
258 PF13812 PPR_3: Pentatricopept 97.2 0.00058 1.3E-08 46.3 4.0 32 397-428 3-34 (34)
259 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.022 4.7E-07 62.3 17.7 68 101-168 72-141 (453)
260 PRK15180 Vi polysaccharide bio 97.1 0.55 1.2E-05 51.0 32.3 125 149-278 299-423 (831)
261 KOG0543 FKBP-type peptidyl-pro 97.1 0.0075 1.6E-07 64.2 13.7 142 179-344 212-354 (397)
262 PF14559 TPR_19: Tetratricopep 97.1 0.0016 3.5E-08 52.3 6.9 55 222-277 2-56 (68)
263 PF13812 PPR_3: Pentatricopept 97.1 0.00074 1.6E-08 45.7 4.1 31 213-243 3-33 (34)
264 KOG2066 Vacuolar assembly/sort 97.1 0.18 3.9E-06 57.9 24.9 76 184-263 365-440 (846)
265 PF03704 BTAD: Bacterial trans 97.1 0.019 4.2E-07 54.2 14.9 70 177-248 64-138 (146)
266 KOG2471 TPR repeat-containing 97.1 0.53 1.2E-05 51.3 26.5 296 105-407 18-381 (696)
267 PRK11619 lytic murein transgly 97.0 1.1 2.5E-05 52.9 39.1 407 106-559 35-463 (644)
268 KOG0307 Vesicle coat complex C 97.0 1.3 2.7E-05 53.3 34.7 89 434-528 605-693 (1049)
269 KOG2062 26S proteasome regulat 97.0 0.39 8.5E-06 54.9 26.3 52 438-491 509-563 (929)
270 PF13371 TPR_9: Tetratricopept 97.0 0.0039 8.5E-08 50.8 8.6 56 184-241 4-59 (73)
271 KOG2034 Vacuolar sorting prote 97.0 1.2 2.5E-05 52.5 32.4 169 148-342 367-556 (911)
272 KOG4555 TPR repeat-containing 97.0 0.03 6.5E-07 49.8 13.6 93 184-278 52-147 (175)
273 PF13371 TPR_9: Tetratricopept 96.9 0.0031 6.7E-08 51.5 7.2 60 146-207 2-61 (73)
274 COG1729 Uncharacterized protei 96.9 0.014 3E-07 59.4 12.9 100 141-241 144-245 (262)
275 PF03704 BTAD: Bacterial trans 96.9 0.045 9.8E-07 51.6 16.0 106 150-274 17-124 (146)
276 PF13424 TPR_12: Tetratricopep 96.9 0.0035 7.5E-08 52.0 7.2 62 141-202 7-73 (78)
277 PF13424 TPR_12: Tetratricopep 96.9 0.0029 6.3E-08 52.4 6.6 64 176-239 6-74 (78)
278 KOG1586 Protein required for f 96.9 0.46 9.9E-06 47.0 22.0 23 326-348 164-186 (288)
279 PF01535 PPR: PPR repeat; Int 96.9 0.0013 2.8E-08 43.4 3.4 29 397-425 2-30 (31)
280 COG1747 Uncharacterized N-term 96.9 0.67 1.5E-05 50.9 25.3 170 245-424 65-234 (711)
281 PRK15180 Vi polysaccharide bio 96.8 1 2.2E-05 49.0 29.7 131 107-243 292-423 (831)
282 PF08579 RPM2: Mitochondrial r 96.8 0.017 3.6E-07 50.3 10.7 31 298-328 86-116 (120)
283 COG3118 Thioredoxin domain-con 96.8 0.07 1.5E-06 54.8 16.9 57 217-274 140-196 (304)
284 PF13512 TPR_18: Tetratricopep 96.8 0.046 1E-06 50.3 13.9 67 145-211 16-83 (142)
285 PF13512 TPR_18: Tetratricopep 96.7 0.039 8.4E-07 50.8 13.0 71 105-175 11-83 (142)
286 KOG0890 Protein kinase of the 96.7 1 2.3E-05 58.3 29.3 326 109-460 1388-1732(2382)
287 COG3118 Thioredoxin domain-con 96.7 0.16 3.5E-06 52.2 18.5 127 180-310 139-265 (304)
288 PF01535 PPR: PPR repeat; Int 96.7 0.002 4.3E-08 42.5 3.5 28 213-240 2-29 (31)
289 PF09205 DUF1955: Domain of un 96.7 0.17 3.7E-06 45.3 16.1 144 111-278 9-152 (161)
290 PF09205 DUF1955: Domain of un 96.7 0.21 4.6E-06 44.7 16.5 137 186-348 13-152 (161)
291 KOG1464 COP9 signalosome, subu 96.7 0.87 1.9E-05 45.9 25.8 276 134-420 21-328 (440)
292 PF08579 RPM2: Mitochondrial r 96.7 0.022 4.7E-07 49.7 10.1 86 400-512 30-116 (120)
293 PF06239 ECSIT: Evolutionarily 96.7 0.025 5.5E-07 55.4 11.9 101 210-329 46-151 (228)
294 COG5159 RPN6 26S proteasome re 96.6 0.47 1E-05 48.2 20.5 100 320-423 129-234 (421)
295 PF04053 Coatomer_WDAD: Coatom 96.6 0.084 1.8E-06 59.2 17.2 131 318-490 297-427 (443)
296 PF06239 ECSIT: Evolutionarily 96.6 0.034 7.3E-07 54.6 12.1 103 394-515 46-153 (228)
297 PF02259 FAT: FAT domain; Int 96.6 1.3 2.8E-05 48.5 26.8 55 181-240 4-58 (352)
298 KOG2063 Vacuolar assembly/sort 96.5 2.1 4.5E-05 51.5 28.5 59 107-165 310-372 (877)
299 KOG2034 Vacuolar sorting prote 96.5 2.3 4.9E-05 50.2 27.9 176 179-382 362-556 (911)
300 PF02259 FAT: FAT domain; Int 96.5 1.5 3.3E-05 48.0 26.5 65 245-309 145-212 (352)
301 KOG1464 COP9 signalosome, subu 96.4 1.2 2.6E-05 44.9 23.3 274 169-453 20-326 (440)
302 PF04053 Coatomer_WDAD: Coatom 96.4 0.1 2.2E-06 58.5 16.5 130 284-455 298-427 (443)
303 KOG0292 Vesicle coat complex C 96.3 1 2.2E-05 52.6 23.4 126 111-273 600-725 (1202)
304 KOG4555 TPR repeat-containing 96.3 0.1 2.3E-06 46.5 12.4 92 148-241 52-145 (175)
305 KOG2396 HAT (Half-A-TPR) repea 96.2 2.6 5.6E-05 46.6 33.3 91 158-253 90-181 (568)
306 KOG0530 Protein farnesyltransf 96.2 1.5 3.3E-05 44.2 21.2 121 150-275 54-176 (318)
307 PF04097 Nic96: Nup93/Nic96; 96.2 0.69 1.5E-05 54.6 22.7 91 286-385 263-356 (613)
308 KOG0530 Protein farnesyltransf 96.1 0.55 1.2E-05 47.3 17.9 226 327-565 54-298 (318)
309 PRK11619 lytic murein transgly 96.1 4.3 9.3E-05 48.1 36.1 54 323-382 319-372 (644)
310 PRK09687 putative lyase; Provi 96.1 2.4 5.2E-05 44.7 28.4 78 174-258 36-117 (280)
311 KOG0292 Vesicle coat complex C 96.1 1.3 2.7E-05 51.9 22.5 79 478-557 1060-1140(1202)
312 KOG2471 TPR repeat-containing 96.0 0.099 2.1E-06 56.7 13.0 106 405-512 250-381 (696)
313 PF13170 DUF4003: Protein of u 96.0 0.44 9.6E-06 50.5 18.0 160 411-573 78-255 (297)
314 PF04097 Nic96: Nup93/Nic96; 96.0 0.88 1.9E-05 53.7 22.4 90 322-424 264-356 (613)
315 PF12921 ATP13: Mitochondrial 95.9 0.14 3E-06 46.7 11.8 84 139-222 2-99 (126)
316 KOG4507 Uncharacterized conser 95.9 1.3 2.8E-05 49.5 20.8 117 125-243 196-315 (886)
317 KOG2063 Vacuolar assembly/sort 95.8 0.65 1.4E-05 55.6 20.1 29 358-386 506-534 (877)
318 smart00299 CLH Clathrin heavy 95.8 0.39 8.5E-06 44.8 15.1 42 180-223 12-53 (140)
319 PF13170 DUF4003: Protein of u 95.8 0.7 1.5E-05 49.0 18.3 132 332-471 78-223 (297)
320 COG0790 FOG: TPR repeat, SEL1 95.7 3.5 7.5E-05 43.9 24.1 47 412-461 172-222 (292)
321 smart00299 CLH Clathrin heavy 95.7 0.4 8.8E-06 44.7 14.8 129 105-258 8-137 (140)
322 PF08424 NRDE-2: NRDE-2, neces 95.7 1.8 3.9E-05 46.7 21.6 61 228-290 48-108 (321)
323 COG5290 IkappaB kinase complex 95.7 5.8 0.00013 46.1 31.2 67 102-169 661-731 (1243)
324 PF12921 ATP13: Mitochondrial 95.7 0.28 6.1E-06 44.7 12.8 58 387-444 44-102 (126)
325 COG5159 RPN6 26S proteasome re 95.7 2.1 4.5E-05 43.7 19.7 202 108-309 7-234 (421)
326 KOG0403 Neoplastic transformat 95.6 1 2.2E-05 48.6 18.3 62 469-531 513-574 (645)
327 KOG4234 TPR repeat-containing 95.6 0.2 4.3E-06 48.3 11.8 91 148-240 104-197 (271)
328 KOG4234 TPR repeat-containing 95.6 0.39 8.5E-06 46.3 13.7 91 291-387 105-199 (271)
329 COG0790 FOG: TPR repeat, SEL1 95.6 2 4.4E-05 45.6 21.5 116 190-312 92-222 (292)
330 COG5290 IkappaB kinase complex 95.5 6.6 0.00014 45.6 28.5 63 144-207 668-733 (1243)
331 PF13428 TPR_14: Tetratricopep 95.5 0.043 9.3E-07 39.6 5.7 40 177-218 3-42 (44)
332 KOG2168 Cullins [Cell cycle co 95.4 4 8.7E-05 48.2 23.5 94 434-528 626-735 (835)
333 PF07575 Nucleopor_Nup85: Nup8 95.3 0.37 8E-06 56.5 15.8 25 105-129 149-173 (566)
334 PF10602 RPN7: 26S proteasome 95.3 0.47 1E-05 46.2 13.9 61 213-273 38-100 (177)
335 COG4649 Uncharacterized protei 95.2 1.4 3.1E-05 41.6 15.7 127 222-348 69-199 (221)
336 COG4649 Uncharacterized protei 95.1 0.91 2E-05 42.9 14.3 128 327-459 69-196 (221)
337 KOG4648 Uncharacterized conser 94.9 0.14 3E-06 53.2 9.0 96 143-242 101-196 (536)
338 COG2976 Uncharacterized protei 94.8 2.8 6.1E-05 40.7 16.9 97 360-460 93-189 (207)
339 PRK09687 putative lyase; Provi 94.8 6.5 0.00014 41.5 29.6 59 210-272 36-98 (280)
340 PF04190 DUF410: Protein of un 94.7 3.9 8.5E-05 42.6 19.8 27 355-381 89-115 (260)
341 PF04910 Tcf25: Transcriptiona 94.7 2.8 6.1E-05 45.9 19.5 57 288-344 110-167 (360)
342 PF09613 HrpB1_HrpK: Bacterial 94.6 0.98 2.1E-05 42.5 13.3 54 151-206 22-75 (160)
343 PF13428 TPR_14: Tetratricopep 94.6 0.1 2.2E-06 37.6 5.5 40 213-253 3-42 (44)
344 KOG0687 26S proteasome regulat 94.6 4.6 0.0001 42.2 18.9 80 170-251 65-148 (393)
345 PF07575 Nucleopor_Nup85: Nup8 94.6 3.2 7E-05 48.7 20.9 29 430-458 405-433 (566)
346 PF08424 NRDE-2: NRDE-2, neces 94.5 5.7 0.00012 42.9 21.2 135 372-531 47-185 (321)
347 PF10602 RPN7: 26S proteasome 94.5 0.84 1.8E-05 44.5 13.4 95 286-384 41-141 (177)
348 KOG4648 Uncharacterized conser 94.5 0.23 4.9E-06 51.6 9.5 90 220-311 106-195 (536)
349 KOG0276 Vesicle coat complex C 94.5 0.52 1.1E-05 52.7 12.7 99 368-491 649-747 (794)
350 KOG0276 Vesicle coat complex C 94.4 0.46 9.9E-06 53.1 12.3 152 113-306 595-746 (794)
351 COG3629 DnrI DNA-binding trans 94.4 1.5 3.3E-05 45.5 15.4 79 175-255 153-236 (280)
352 KOG2168 Cullins [Cell cycle co 94.2 5.3 0.00011 47.2 20.8 24 251-274 330-353 (835)
353 COG2976 Uncharacterized protei 94.0 1.3 2.7E-05 43.0 12.8 92 218-311 96-189 (207)
354 KOG2199 Signal transducing ada 94.0 10 0.00022 40.6 24.1 15 550-564 353-367 (462)
355 COG5187 RPN7 26S proteasome re 93.9 8.6 0.00019 39.5 19.3 111 199-309 103-220 (412)
356 KOG2581 26S proteasome regulat 93.6 13 0.00027 40.2 21.8 126 258-387 138-278 (493)
357 PF09613 HrpB1_HrpK: Bacterial 93.6 2.2 4.7E-05 40.3 13.4 18 405-422 54-71 (160)
358 KOG0686 COP9 signalosome, subu 93.6 13 0.00028 40.3 22.0 167 282-458 151-332 (466)
359 KOG0403 Neoplastic transformat 93.3 15 0.00032 40.1 22.7 47 142-191 53-99 (645)
360 PRK13184 pknD serine/threonine 93.2 27 0.00059 43.0 30.9 359 106-494 477-869 (932)
361 PRK13184 pknD serine/threonine 93.2 27 0.0006 43.0 32.5 352 180-563 480-868 (932)
362 PF13431 TPR_17: Tetratricopep 93.1 0.12 2.7E-06 34.8 3.3 32 198-231 2-33 (34)
363 COG3947 Response regulator con 93.1 7.4 0.00016 40.1 17.0 43 227-271 149-191 (361)
364 PF06552 TOM20_plant: Plant sp 93.0 1.2 2.5E-05 42.7 10.7 76 191-276 51-137 (186)
365 COG3947 Response regulator con 92.9 8.7 0.00019 39.6 17.2 55 436-491 285-339 (361)
366 PRK12798 chemotaxis protein; R 92.9 17 0.00037 39.8 22.2 195 294-497 125-327 (421)
367 KOG0687 26S proteasome regulat 92.7 11 0.00023 39.6 17.7 102 356-459 104-210 (393)
368 PF13929 mRNA_stabil: mRNA sta 92.5 6 0.00013 41.1 15.9 61 245-305 201-262 (292)
369 COG5187 RPN7 26S proteasome re 92.2 15 0.00034 37.7 21.0 103 169-275 109-221 (412)
370 TIGR02561 HrpB1_HrpK type III 92.2 4.1 8.9E-05 37.8 12.7 51 152-204 23-73 (153)
371 KOG1498 26S proteasome regulat 92.2 20 0.00042 38.7 20.3 90 360-460 135-242 (439)
372 KOG1463 26S proteasome regulat 92.1 18 0.00039 38.2 22.0 162 251-420 133-312 (411)
373 KOG2581 26S proteasome regulat 92.1 8.7 0.00019 41.4 16.7 130 113-242 135-278 (493)
374 COG3629 DnrI DNA-binding trans 92.0 2 4.3E-05 44.7 11.9 61 213-274 155-215 (280)
375 KOG2582 COP9 signalosome, subu 92.0 19 0.00042 38.3 21.7 89 173-270 73-164 (422)
376 KOG4368 Predicted RNA binding 91.9 25 0.00055 39.5 31.9 14 315-328 102-115 (757)
377 KOG4642 Chaperone-dependent E3 91.8 1.8 3.9E-05 43.2 10.5 117 149-270 20-141 (284)
378 PF07035 Mic1: Colon cancer-as 91.7 9.8 0.00021 36.4 15.3 100 302-421 15-115 (167)
379 KOG0545 Aryl-hydrocarbon recep 91.7 9 0.0002 38.5 15.2 61 178-240 233-293 (329)
380 PF13929 mRNA_stabil: mRNA sta 91.6 17 0.00038 37.8 18.0 140 225-369 142-291 (292)
381 PF07035 Mic1: Colon cancer-as 91.6 10 0.00022 36.3 15.3 133 126-274 16-148 (167)
382 COG5116 RPN2 26S proteasome re 91.5 9 0.00019 43.0 16.5 63 283-345 174-237 (926)
383 KOG4642 Chaperone-dependent E3 91.3 2.4 5.1E-05 42.4 10.8 120 291-417 20-139 (284)
384 PF13176 TPR_7: Tetratricopept 91.2 0.45 9.7E-06 32.5 4.4 24 178-201 2-25 (36)
385 PF06552 TOM20_plant: Plant sp 91.2 1.9 4.2E-05 41.3 9.9 67 191-260 7-83 (186)
386 PF13431 TPR_17: Tetratricopep 91.1 0.26 5.6E-06 33.3 3.0 32 234-266 2-33 (34)
387 PF11817 Foie-gras_1: Foie gra 91.0 5.1 0.00011 41.4 14.1 65 357-421 179-244 (247)
388 PF00515 TPR_1: Tetratricopept 91.0 0.63 1.4E-05 31.1 4.9 29 177-205 3-31 (34)
389 KOG2005 26S proteasome regulat 90.9 36 0.00077 39.3 25.5 25 141-165 180-204 (878)
390 PF04910 Tcf25: Transcriptiona 90.8 6.9 0.00015 42.9 15.4 58 436-493 109-167 (360)
391 TIGR02561 HrpB1_HrpK type III 90.7 9.1 0.0002 35.6 13.4 52 187-240 22-73 (153)
392 KOG3941 Intermediate in Toll s 90.6 1.8 3.8E-05 44.2 9.5 82 231-331 92-173 (406)
393 PF04190 DUF410: Protein of un 90.5 24 0.00052 36.7 21.3 25 210-234 89-113 (260)
394 KOG4274 Positive cofactor 2 (P 90.4 1.2 2.5E-05 49.4 8.6 9 788-796 303-311 (742)
395 KOG2005 26S proteasome regulat 90.4 39 0.00085 39.0 28.2 75 181-266 184-259 (878)
396 PF10255 Paf67: RNA polymerase 90.3 22 0.00048 39.2 18.5 66 317-382 123-190 (404)
397 PF09797 NatB_MDM20: N-acetylt 90.3 32 0.0007 37.9 24.8 48 263-311 200-247 (365)
398 PF09797 NatB_MDM20: N-acetylt 90.3 32 0.0007 37.9 22.7 55 322-382 186-243 (365)
399 PF13176 TPR_7: Tetratricopept 90.2 0.6 1.3E-05 31.9 4.2 23 249-271 2-24 (36)
400 KOG0686 COP9 signalosome, subu 90.1 32 0.00069 37.4 21.5 165 247-423 151-332 (466)
401 PF14669 Asp_Glu_race_2: Putat 90.0 18 0.00038 35.1 14.9 21 434-454 185-205 (233)
402 PF04762 IKI3: IKI3 family; I 89.8 6.9 0.00015 48.5 15.9 50 225-275 792-843 (928)
403 KOG1497 COP9 signalosome, subu 89.7 29 0.00062 36.4 18.3 55 252-306 109-169 (399)
404 PRK14700 recombination factor 89.7 29 0.00062 36.5 17.8 93 471-563 129-229 (300)
405 KOG0545 Aryl-hydrocarbon recep 89.6 11 0.00024 37.9 13.8 64 213-277 232-295 (329)
406 KOG3783 Uncharacterized conser 89.6 41 0.00089 38.0 27.0 289 252-565 196-521 (546)
407 KOG3941 Intermediate in Toll s 89.5 6.6 0.00014 40.2 12.4 117 245-385 66-191 (406)
408 COG5116 RPN2 26S proteasome re 89.4 13 0.00028 41.8 15.5 120 404-528 507-631 (926)
409 PF00515 TPR_1: Tetratricopept 89.2 0.97 2.1E-05 30.1 4.7 30 431-460 2-31 (34)
410 KOG4279 Serine/threonine prote 89.2 7.2 0.00016 45.1 13.8 126 333-460 180-317 (1226)
411 PF07719 TPR_2: Tetratricopept 89.0 1.1 2.5E-05 29.6 4.9 29 177-205 3-31 (34)
412 KOG0414 Chromosome condensatio 88.7 72 0.0016 39.6 24.9 21 429-449 636-656 (1251)
413 PRK12798 chemotaxis protein; R 88.6 43 0.00092 36.8 24.3 236 103-349 80-328 (421)
414 PF13174 TPR_6: Tetratricopept 87.9 0.76 1.6E-05 30.2 3.5 29 539-567 4-32 (33)
415 KOG0889 Histone acetyltransfer 87.9 1.4E+02 0.003 41.9 29.8 22 182-203 2489-2510(3550)
416 PF14929 TAF1_subA: TAF RNA Po 87.8 59 0.0013 37.6 26.2 136 409-550 323-470 (547)
417 KOG4570 Uncharacterized conser 87.6 6 0.00013 41.2 10.9 101 357-460 65-165 (418)
418 PF00637 Clathrin: Region in C 87.5 0.0071 1.5E-07 56.9 -9.5 53 218-270 14-66 (143)
419 PF07719 TPR_2: Tetratricopept 87.5 1.5 3.2E-05 29.0 4.8 28 432-459 3-30 (34)
420 KOG0551 Hsp90 co-chaperone CNS 87.4 13 0.00029 39.1 13.4 97 141-239 83-181 (390)
421 KOG4507 Uncharacterized conser 87.4 5 0.00011 45.1 10.9 88 223-311 619-706 (886)
422 KOG1061 Vesicle coat complex A 87.3 69 0.0015 37.8 28.0 47 121-168 45-94 (734)
423 PF11838 ERAP1_C: ERAP1-like C 87.3 46 0.001 35.7 19.0 81 227-310 146-230 (324)
424 KOG1676 K-homology type RNA bi 87.3 9.6 0.00021 43.1 13.1 18 758-775 498-515 (600)
425 KOG3807 Predicted membrane pro 86.9 20 0.00044 37.5 14.2 60 434-493 279-339 (556)
426 KOG1114 Tripeptidyl peptidase 86.9 69 0.0015 38.6 19.9 56 499-554 1230-1286(1304)
427 KOG2422 Uncharacterized conser 86.9 13 0.00029 41.9 13.9 101 105-205 343-449 (665)
428 PRK07003 DNA polymerase III su 86.8 27 0.00058 41.8 17.0 46 156-203 181-226 (830)
429 KOG0376 Serine-threonine phosp 86.8 1.1 2.3E-05 49.4 5.5 103 146-255 11-114 (476)
430 KOG1463 26S proteasome regulat 86.5 48 0.001 35.2 24.7 104 320-423 132-237 (411)
431 KOG4279 Serine/threonine prote 85.6 21 0.00045 41.5 14.7 114 231-344 183-315 (1226)
432 PF11817 Foie-gras_1: Foie gra 85.4 24 0.00052 36.4 14.7 65 318-382 180-244 (247)
433 PRK07003 DNA polymerase III su 85.2 29 0.00062 41.5 16.2 85 191-278 180-277 (830)
434 cd00923 Cyt_c_Oxidase_Va Cytoc 85.1 12 0.00027 31.8 9.6 62 480-542 22-83 (103)
435 PRK13342 recombination factor 84.9 55 0.0012 36.7 18.4 84 479-562 244-332 (413)
436 KOG1308 Hsp70-interacting prot 84.8 0.95 2.1E-05 47.5 3.8 89 151-243 126-214 (377)
437 KOG1308 Hsp70-interacting prot 84.8 0.84 1.8E-05 47.9 3.4 90 186-278 125-214 (377)
438 PF12862 Apc5: Anaphase-promot 84.7 5.3 0.00011 34.2 7.9 55 150-204 9-70 (94)
439 PF13374 TPR_10: Tetratricopep 84.6 2.2 4.9E-05 29.7 4.7 27 177-203 4-30 (42)
440 KOG1498 26S proteasome regulat 84.4 66 0.0014 34.9 19.0 90 399-495 135-242 (439)
441 PF02284 COX5A: Cytochrome c o 84.2 14 0.00031 31.8 9.8 48 229-276 28-75 (108)
442 PF13181 TPR_8: Tetratricopept 84.1 2.2 4.7E-05 28.3 4.2 28 177-204 3-30 (34)
443 PF04762 IKI3: IKI3 family; I 83.9 8.8 0.00019 47.7 12.2 218 102-342 692-927 (928)
444 KOG4521 Nuclear pore complex, 83.7 37 0.00081 41.7 16.2 62 318-381 985-1046(1480)
445 PRK07764 DNA polymerase III su 83.6 1.2E+02 0.0026 37.3 29.7 30 433-463 251-280 (824)
446 PF10475 DUF2450: Protein of u 83.6 65 0.0014 34.2 18.7 113 180-304 103-220 (291)
447 PRK13342 recombination factor 83.5 83 0.0018 35.3 19.8 33 408-440 243-275 (413)
448 KOG2422 Uncharacterized conser 83.4 90 0.0019 35.7 24.2 54 220-273 351-405 (665)
449 KOG4521 Nuclear pore complex, 83.4 33 0.00072 42.1 15.7 125 357-488 984-1125(1480)
450 KOG1114 Tripeptidyl peptidase 83.4 49 0.0011 39.8 16.8 73 297-374 1212-1285(1304)
451 PF11207 DUF2989: Protein of u 83.3 15 0.00032 36.2 10.9 78 186-266 118-198 (203)
452 PF14669 Asp_Glu_race_2: Putat 83.2 47 0.001 32.3 15.6 57 507-563 139-209 (233)
453 KOG3364 Membrane protein invol 83.1 14 0.00029 33.8 9.7 71 137-207 30-103 (149)
454 PF13374 TPR_10: Tetratricopep 83.1 2.7 5.8E-05 29.3 4.6 27 213-239 4-30 (42)
455 COG4715 Uncharacterized conser 83.1 91 0.002 35.5 27.7 89 286-382 308-396 (587)
456 COG4715 Uncharacterized conser 82.9 93 0.002 35.4 32.5 94 247-345 304-399 (587)
457 KOG0376 Serine-threonine phosp 82.8 2.1 4.5E-05 47.2 5.5 97 107-207 7-104 (476)
458 PF09986 DUF2225: Uncharacteri 82.7 9.9 0.00021 38.3 10.0 69 319-387 121-196 (214)
459 KOG1497 COP9 signalosome, subu 82.7 68 0.0015 33.8 21.9 105 320-427 107-216 (399)
460 PRK13800 putative oxidoreducta 82.7 1.4E+02 0.003 37.4 29.7 93 394-493 788-880 (897)
461 COG2256 MGS1 ATPase related to 82.6 81 0.0018 34.6 18.4 31 433-463 249-282 (436)
462 PF02284 COX5A: Cytochrome c o 82.6 21 0.00045 30.8 10.1 62 481-543 26-87 (108)
463 PF07163 Pex26: Pex26 protein; 82.6 43 0.00092 34.7 14.1 87 218-304 90-181 (309)
464 PF13174 TPR_6: Tetratricopept 82.4 2.6 5.7E-05 27.5 4.1 25 180-204 5-29 (33)
465 PF07163 Pex26: Pex26 protein; 82.4 42 0.00091 34.7 14.0 126 398-523 38-181 (309)
466 PF09670 Cas_Cas02710: CRISPR- 82.3 21 0.00046 39.5 13.3 58 109-167 136-197 (379)
467 PF11207 DUF2989: Protein of u 82.1 15 0.00032 36.2 10.5 75 298-375 123-197 (203)
468 KOG0414 Chromosome condensatio 81.8 1.5E+02 0.0032 37.0 22.8 76 295-376 571-657 (1251)
469 PRK14700 recombination factor 81.5 75 0.0016 33.5 19.3 46 400-445 128-176 (300)
470 PF13181 TPR_8: Tetratricopept 81.5 3.6 7.9E-05 27.2 4.5 28 432-459 3-30 (34)
471 KOG4570 Uncharacterized conser 81.1 17 0.00036 38.0 10.8 49 445-493 115-163 (418)
472 KOG2297 Predicted translation 80.8 77 0.0017 33.2 19.1 277 135-458 107-399 (412)
473 PF14561 TPR_20: Tetratricopep 80.8 18 0.00038 30.8 9.4 62 198-261 11-73 (90)
474 PRK10941 hypothetical protein; 80.6 21 0.00045 37.3 11.8 74 143-218 185-258 (269)
475 PF12862 Apc5: Anaphase-promot 80.6 9.5 0.00021 32.7 7.9 69 112-180 6-82 (94)
476 cd00923 Cyt_c_Oxidase_Va Cytoc 80.6 22 0.00048 30.4 9.5 49 227-275 23-71 (103)
477 KOG3598 Thyroid hormone recept 80.6 0.49 1.1E-05 57.6 -0.2 11 612-622 1946-1956(2220)
478 PF08311 Mad3_BUB1_I: Mad3/BUB 80.5 45 0.00098 30.3 13.4 43 413-455 81-124 (126)
479 PF00244 14-3-3: 14-3-3 protei 80.3 70 0.0015 32.7 15.4 40 181-221 7-46 (236)
480 PRK13800 putative oxidoreducta 79.6 1.8E+02 0.0038 36.5 28.3 122 429-560 755-877 (897)
481 KOG0991 Replication factor C, 79.2 75 0.0016 32.0 15.8 140 214-368 133-284 (333)
482 TIGR03504 FimV_Cterm FimV C-te 78.9 3.7 8.1E-05 29.5 3.9 24 506-529 5-28 (44)
483 PF12238 MSA-2c: Merozoite sur 78.7 72 0.0016 31.5 16.4 30 419-448 19-48 (205)
484 KOG3807 Predicted membrane pro 78.5 94 0.002 32.8 22.1 60 399-460 279-341 (556)
485 PF14561 TPR_20: Tetratricopep 78.0 23 0.0005 30.1 9.2 66 232-298 9-75 (90)
486 KOG1811 Predicted Zn2+-binding 77.9 1.3E+02 0.0029 34.3 20.4 339 118-493 531-879 (1141)
487 KOG1839 Uncharacterized protei 77.7 87 0.0019 39.4 17.2 422 121-588 689-1152(1236)
488 PF09986 DUF2225: Uncharacteri 77.5 27 0.00058 35.2 11.2 26 216-241 170-195 (214)
489 PF04090 RNA_pol_I_TF: RNA pol 77.5 47 0.001 32.8 12.4 28 248-275 43-70 (199)
490 COG5071 RPN5 26S proteasome re 77.3 83 0.0018 32.8 14.2 96 360-457 135-239 (439)
491 KOG3783 Uncharacterized conser 77.0 1.4E+02 0.003 34.0 22.3 144 108-253 194-344 (546)
492 KOG2911 Uncharacterized conser 76.7 1.2E+02 0.0027 33.2 16.9 26 432-457 258-283 (439)
493 COG5071 RPN5 26S proteasome re 76.6 57 0.0012 33.9 12.9 97 285-381 135-237 (439)
494 COG5110 RPN1 26S proteasome re 76.6 1.4E+02 0.0031 33.8 21.0 183 331-524 410-603 (881)
495 PF00244 14-3-3: 14-3-3 protei 76.1 32 0.0007 35.2 11.5 61 214-274 4-65 (236)
496 PRK13341 recombination factor 76.0 1.6E+02 0.0034 35.8 18.8 173 296-493 169-360 (725)
497 PF10255 Paf67: RNA polymerase 75.9 1.4E+02 0.0029 33.2 21.8 283 151-471 3-318 (404)
498 PF08580 KAR9: Yeast cortical 75.8 1.9E+02 0.004 34.8 21.3 302 171-496 13-342 (683)
499 PRK08691 DNA polymerase III su 75.7 1.6E+02 0.0035 35.1 18.2 164 141-308 166-352 (709)
500 PF15469 Sec5: Exocyst complex 75.6 62 0.0014 31.5 13.1 169 234-435 4-179 (182)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.6e-57 Score=552.14 Aligned_cols=536 Identities=15% Similarity=0.161 Sum_probs=426.1
Q ss_pred HHHHhhcCCCCCCCCCCccccccccCCCHHHHHHHHHHhhccccCCCCCccCCCCCCCCC-CCCCCC-CCCCC--ccccc
Q 038852 25 QFHNLALNPNSPNPNLNPISARGYAFSSAEEAAAERRRRKRRLRIEPPLHAIRPNPTQPP-PRDPNA-PRLPD--TTSAL 100 (851)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~l~~--~~~~~ 100 (851)
.+..+|.....++...|+.+|++|...+....|...+.+|++..+.|...+....-.... ...... ..+.. ....+
T Consensus 139 ~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~ 218 (857)
T PLN03077 139 HAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGF 218 (857)
T ss_pred HHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCC
Confidence 445667777778888999999999999999999999999988766544332210000000 000000 00000 00112
Q ss_pred cCCCccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHH
Q 038852 101 VGPRLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNN 180 (851)
Q Consensus 101 ~~~~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~ 180 (851)
..+...+..++..|++.|++++|..+|++|. .+|..+||.+|.+|++.|++++|+++|++|. ..|+.||..+|+.
T Consensus 219 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~-~~g~~Pd~~ty~~ 293 (857)
T PLN03077 219 ELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMR-ELSVDPDLMTITS 293 (857)
T ss_pred CcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHH
Confidence 2233556777888888888888888887764 4677788888888888888888888888874 4577788888888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 038852 181 LINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLG 260 (851)
Q Consensus 181 Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g 260 (851)
++.+|++.|+++.|.+++..|.+.+ ..||..+|+.|+.+|++.|++++|.++|++|.+ +|..+|+++|.+|++.|
T Consensus 294 ll~a~~~~g~~~~a~~l~~~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g 368 (857)
T PLN03077 294 VISACELLGDERLGREMHGYVVKTG-FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNG 368 (857)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHhC-CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCC
Confidence 8888888888888888888876654 777888888888888888888888888887753 47777888888888888
Q ss_pred CHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 038852 261 NLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFE 340 (851)
Q Consensus 261 ~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~ 340 (851)
++++|+++|++|.+.++.||..+|+.++.+|++.|++++|.++++.+.+.|+.++..+|+.|+.+|++.|++++|+++|+
T Consensus 369 ~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~ 448 (857)
T PLN03077 369 LPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFH 448 (857)
T ss_pred CHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038852 341 QMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLRE 420 (851)
Q Consensus 341 ~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 420 (851)
+|.+. |..+|+.++.+|++.|+.++|+++|++|.. .+.||..+|+.++.+|++.|+++.+.+++..
T Consensus 449 ~m~~~---------d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-----~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 449 NIPEK---------DVISWTSIIAGLRLNNRCFEALIFFRQMLL-----TLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred hCCCC---------CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-----CCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 77542 556788888888888888888888888753 2556888888888888888888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH
Q 038852 421 ISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDF 500 (851)
Q Consensus 421 m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~ 500 (851)
+.+.|+.+|..+++.|+++|+++|++++|.++|+++ .++...|+.++.+|++.|+.++|+++|++|.+.|+.||.
T Consensus 515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~ 589 (857)
T PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589 (857)
T ss_pred HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc
Confidence 888888888888888889999999999999998887 457788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCCCCCCCCCCCC
Q 038852 501 LIYDVVVRGLCNEGLFDMSKDIVDQMM-KYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAAPVPPPRTSGPPQ 579 (851)
Q Consensus 501 ~~~~~ll~a~~~~g~~~~A~~~~~~m~-~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~~~~~p~~~~~~~~~~ 579 (851)
.||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|.+++++|++.|+++||.+++++| ++.|..
T Consensus 590 ~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m------------~~~pd~ 657 (857)
T PLN03077 590 VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM------------PITPDP 657 (857)
T ss_pred ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC------------CCCCCH
Confidence 999999999999999999999999999 7899999999999999999999999999999995 456778
Q ss_pred CCCccccCCCcCccccccCCCc
Q 038852 580 MTGQQYSGYNRMAREQQFGSNQ 601 (851)
Q Consensus 580 ~~~~~ll~a~~~~~~~~~g~~~ 601 (851)
..|++++++|+.|+|.++|+.-
T Consensus 658 ~~~~aLl~ac~~~~~~e~~e~~ 679 (857)
T PLN03077 658 AVWGALLNACRIHRHVELGELA 679 (857)
T ss_pred HHHHHHHHHHHHcCChHHHHHH
Confidence 8999999999999999998764
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.9e-55 Score=523.45 Aligned_cols=445 Identities=15% Similarity=0.235 Sum_probs=419.7
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRI-RPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLIN 183 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~ 183 (851)
..+..++..+++.|++++|+++|++|...++ .++..+++.++.+|.+.|.+++|+++|+.|.. ||..+|+.|+.
T Consensus 371 ~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~ 445 (1060)
T PLN03218 371 PEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMS 445 (1060)
T ss_pred hHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHH
Confidence 4577889999999999999999999999885 46788888999999999999999999998842 89999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 038852 184 TYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLE 263 (851)
Q Consensus 184 ~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~ 263 (851)
+|++.|++++|+++|++|.+.+ ..||..+|+.||.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.|+++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 9999999999999999998765 889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 038852 264 KANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLME--RNFRMTPATCNTLLEVLLKHEKKEEAQALFEQ 341 (851)
Q Consensus 264 ~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~--~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~ 341 (851)
+|+++|++|.+.++.||..+|+.++.+|++.|++++|.++|++|.+ .++.+|..+|+.||.+|++.|++++|+++|++
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987 57899999999999999999999999999999
Q ss_pred HHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038852 342 MLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREI 421 (851)
Q Consensus 342 m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 421 (851)
|.+.++.| +..+|+.++.+|++.|++++|+++|++|.. .++.||..+|+.||.+|++.|++++|+++|++|
T Consensus 605 M~e~gi~p-----~~~tynsLI~ay~k~G~~deAl~lf~eM~~----~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 605 IHEYNIKG-----TPEVYTIAVNSCSQKGDWDFALSIYDDMKK----KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred HHHcCCCC-----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999988 789999999999999999999999999954 457789999999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHH
Q 038852 422 STKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFL 501 (851)
Q Consensus 422 ~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~ 501 (851)
.+.|+.||..+|+.||.+|++.|++++|+++|++|.+.++.++...|+.|+.+|++.|++++|+++|++|.+.|+.||..
T Consensus 676 ~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~ 755 (1060)
T PLN03218 676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcC-------------------CHHHHHHHH
Q 038852 502 IYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFG----KAG-------------------RGEEIERVL 558 (851)
Q Consensus 502 ~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~----~~G-------------------~~~eA~~ll 558 (851)
+|+.++.+|++.|++++|.++|++|++.|+.++..++++|+.++. +++ ..++|..+|
T Consensus 756 Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf 835 (1060)
T PLN03218 756 TYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVY 835 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHH
Confidence 999999999999999999999999999999999999999887643 222 236788888
Q ss_pred Hhhhhc
Q 038852 559 NADRWG 564 (851)
Q Consensus 559 ~~~~~~ 564 (851)
++|...
T Consensus 836 ~eM~~~ 841 (1060)
T PLN03218 836 RETISA 841 (1060)
T ss_pred HHHHHC
Confidence 888763
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-54 Score=522.35 Aligned_cols=448 Identities=14% Similarity=0.221 Sum_probs=403.8
Q ss_pred CCccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 038852 103 PRLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLI 182 (851)
Q Consensus 103 ~~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li 182 (851)
+...|..++..|++.|++++|..+|++|...++.+|..+|+.||.+|++.|++++|+++|++|.+ .|+.||..+|+.||
T Consensus 436 d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~-~Gv~PdvvTynaLI 514 (1060)
T PLN03218 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN-AGVEANVHTFGALI 514 (1060)
T ss_pred CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHH
Confidence 34567888999999999999999999999999999999999999999999999999999999954 67889999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHhcC
Q 038852 183 NTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLS--RQLGADSLVYNNLISGFLNLG 260 (851)
Q Consensus 183 ~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~--~g~~pd~~~~~~Li~~~~~~g 260 (851)
.+|++.|++++|+++|++|.+.+ +.||..+|+.||.+|++.|++++|+++|++|.+ .++.||..+|++|+.+|++.|
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~G-v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKN-VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 99999999999999999997764 889999999999999999999999999999976 578899999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 038852 261 NLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFE 340 (851)
Q Consensus 261 ~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~ 340 (851)
++++|+++|++|.+.++.++..+|+.++.+|++.|++++|+++|++|.+.|+.||..+|+.|+.+|++.|++++|+++|+
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038852 341 QMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLRE 420 (851)
Q Consensus 341 ~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 420 (851)
+|.+.|+.| +..+|+.|+.+|++.|++++|+++|++|.. .++.||..+|+.||.+|++.|++++|+++|++
T Consensus 674 eM~k~G~~p-----d~~tynsLI~ay~k~G~~eeA~~lf~eM~~----~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 674 DARKQGIKL-----GTVSYSSLMGACSNAKNWKKALELYEDIKS----IKLRPTVSTMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred HHHHcCCCC-----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999888 788999999999999999999999999854 34667999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHH----c------------------
Q 038852 421 ISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELIT----K------------------ 478 (851)
Q Consensus 421 m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~----~------------------ 478 (851)
|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+.|+.++..+|+.++..|.+ +
T Consensus 745 M~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~ 824 (1060)
T PLN03218 745 MKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIE 824 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccc
Confidence 999999999999999999999999999999999999999999999999888765432 1
Q ss_pred -CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038852 479 -GKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERV 557 (851)
Q Consensus 479 -g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~l 557 (851)
+..++|+.+|++|++.|+.||..||+.++.++++.+..+.+..+++.|...+..++..+|+.|++.+.+. .++|..+
T Consensus 825 n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l 902 (1060)
T PLN03218 825 NKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSL 902 (1060)
T ss_pred cchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHH
Confidence 2246799999999999999999999999988888888999999999888888888899999999987432 4689999
Q ss_pred HHhhhh
Q 038852 558 LNADRW 563 (851)
Q Consensus 558 l~~~~~ 563 (851)
|++|..
T Consensus 903 ~~em~~ 908 (1060)
T PLN03218 903 LEEAAS 908 (1060)
T ss_pred HHHHHH
Confidence 999975
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.8e-54 Score=512.88 Aligned_cols=442 Identities=16% Similarity=0.238 Sum_probs=418.1
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT 184 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~ 184 (851)
..+..++.++.+.++++.|..++..++..++.+|..+||.|+.+|++.|++++|+++|++|.+ +|.++|+.||.+
T Consensus 124 ~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~ 198 (697)
T PLN03081 124 STYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE-----RNLASWGTIIGG 198 (697)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHH
Confidence 567889999999999999999999999999999999999999999999999999999999943 799999999999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 038852 185 YCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEK 264 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~ 264 (851)
|++.|++++|+++|++|.+.+ ..||..+|+.++.+|.+.|+.+++.+++..+.+.|+.+|..+|+.|+++|++.|++++
T Consensus 199 ~~~~g~~~~A~~lf~~M~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 277 (697)
T PLN03081 199 LVDAGNYREAFALFREMWEDG-SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277 (697)
T ss_pred HHHCcCHHHHHHHHHHHHHhC-CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHH
Confidence 999999999999999998764 8899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 038852 265 ANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLD 344 (851)
Q Consensus 265 A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~ 344 (851)
|.++|++|... |..+|+.++.+|++.|++++|+++|++|.+.|+.+|..||+.++.+|++.|++++|.++++.|++
T Consensus 278 A~~vf~~m~~~----~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~ 353 (697)
T PLN03081 278 ARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353 (697)
T ss_pred HHHHHHhCCCC----ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 99999999754 88899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038852 345 NHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTK 424 (851)
Q Consensus 345 ~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 424 (851)
.|+.+ |..+|+.|+.+|++.|++++|+++|++|.+ +|..+||.||.+|++.|+.++|+++|++|.+.
T Consensus 354 ~g~~~-----d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--------~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~ 420 (697)
T PLN03081 354 TGFPL-----DIVANTALVDLYSKWGRMEDARNVFDRMPR--------KNLISWNALIAGYGNHGRGTKAVEMFERMIAE 420 (697)
T ss_pred hCCCC-----CeeehHHHHHHHHHCCCHHHHHHHHHhCCC--------CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99988 788999999999999999999999999953 28899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 038852 425 SLSPDVTTFRTLIDAYLKVERIDDALELFNRMVE-SGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIY 503 (851)
Q Consensus 425 g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~ 503 (851)
|+.||..||+.++.+|.+.|++++|.++|+.|.+ .++.|+...|+.++++|++.|++++|.+++++| ++.||..+|
T Consensus 421 g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~ 497 (697)
T PLN03081 421 GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMW 497 (697)
T ss_pred CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHH
Confidence 9999999999999999999999999999999986 599999999999999999999999999999876 578999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhh-cCCCCCCCCC
Q 038852 504 DVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRW-GYAAPVPPPR 573 (851)
Q Consensus 504 ~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~-~~~~~p~~~~ 573 (851)
+.|+.+|...|+++.|..+++++.+.+. .+...|..|+++|.+.|++++|.+++++|+. +..+.++++|
T Consensus 498 ~~Ll~a~~~~g~~~~a~~~~~~l~~~~p-~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~ 567 (697)
T PLN03081 498 AALLTACRIHKNLELGRLAAEKLYGMGP-EKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTW 567 (697)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHhCCCC-CCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeE
Confidence 9999999999999999999999976542 2467899999999999999999999999985 6778999999
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.5e-52 Score=511.14 Aligned_cols=488 Identities=16% Similarity=0.181 Sum_probs=360.9
Q ss_pred HHhhcCCCCCCCCCCccccccccCCCHHHHHHHHHHhhccccCCCCCccCCCCCCCCCCCCCCCCCCCCccccccCCCcc
Q 038852 27 HNLALNPNSPNPNLNPISARGYAFSSAEEAAAERRRRKRRLRIEPPLHAIRPNPTQPPPRDPNAPRLPDTTSALVGPRLN 106 (851)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 106 (851)
..+|.....++...|+++|++|...+....|...+.+|+...+. ++...
T Consensus 242 ~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~-------------------------------Pd~~t 290 (857)
T PLN03077 242 RLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD-------------------------------PDLMT 290 (857)
T ss_pred HHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-------------------------------CChhH
Confidence 34444444455555555556555555555555555555544331 11234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYC 186 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~ 186 (851)
+..++.++.+.|+++.|.+++..+++.+..+|..+||.||.+|++.|++++|.++|++|. .+|.++|+.||.+|+
T Consensus 291 y~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~~ 365 (857)
T PLN03077 291 ITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAMISGYE 365 (857)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHHH
Confidence 555666666666666666666666666666666666666666666666666666666652 245666666666666
Q ss_pred HcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038852 187 DEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKAN 266 (851)
Q Consensus 187 ~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~ 266 (851)
+.|++++|+++|++|.+.+ +.||..+|+.++.+|++.|++++|.++++.|.+.|+.+|..+|+.|+++|++.|++++|+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g-~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 366 KNGLPDKALETYALMEQDN-VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred hCCCHHHHHHHHHHHHHhC-CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666665433 556666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 038852 267 ELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNH 346 (851)
Q Consensus 267 ~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~ 346 (851)
++|++|.+. |..+|+.++.+|++.|+.++|+++|++|.. ++.||..+|+.++.+|++.|+.+.+.+++..+++.|
T Consensus 445 ~vf~~m~~~----d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g 519 (857)
T PLN03077 445 EVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519 (857)
T ss_pred HHHHhCCCC----CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC
Confidence 666666542 455666666666666666666666666654 356666666666666666666666666666666666
Q ss_pred CCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038852 347 QPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSL 426 (851)
Q Consensus 347 ~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 426 (851)
+.+ +..+++.|+.+|++.|++++|+++|+.+ . +|..+|+.||.+|++.|+.++|+++|++|.+.|+
T Consensus 520 ~~~-----~~~~~naLi~~y~k~G~~~~A~~~f~~~-~--------~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~ 585 (857)
T PLN03077 520 IGF-----DGFLPNALLDLYVRCGRMNYAWNQFNSH-E--------KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585 (857)
T ss_pred CCc-----cceechHHHHHHHHcCCHHHHHHHHHhc-C--------CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 665 5667788889999999999999999887 1 2899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 038852 427 SPDVTTFRTLIDAYLKVERIDDALELFNRMV-ESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDV 505 (851)
Q Consensus 427 ~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ 505 (851)
.||..||+.|+.+|.+.|++++|.++|+.|. +.++.|+..+|+.++++|.+.|++++|.+++++|. ++||..+|.+
T Consensus 586 ~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~a 662 (857)
T PLN03077 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGA 662 (857)
T ss_pred CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHH
Confidence 9999999999999999999999999999999 67999999999999999999999999999999984 6899999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhh-cCCCCCCCCCC
Q 038852 506 VVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRW-GYAAPVPPPRT 574 (851)
Q Consensus 506 ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~-~~~~~p~~~~~ 574 (851)
|+.+|...|+.+.+....+++.+.. +.+...|..|.++|...|++++|.++.+.|++ +..+.+|++|.
T Consensus 663 Ll~ac~~~~~~e~~e~~a~~l~~l~-p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~i 731 (857)
T PLN03077 663 LLNACRIHRHVELGELAAQHIFELD-PNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWV 731 (857)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhhC-CCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEE
Confidence 9999999999999999999988754 34667788899999999999999999999985 77899999994
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.2e-51 Score=489.77 Aligned_cols=441 Identities=18% Similarity=0.208 Sum_probs=414.8
Q ss_pred CccHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 038852 104 RLNLHNRVQSLIRAGDLDAASYLARQAVFSR-IRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLI 182 (851)
Q Consensus 104 ~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li 182 (851)
...+...+..+.+.|++++|+.+|+.|...+ ..+|..+|+.++.+|.+.++++.|..++..|.+ .|+.+|..+|+.|+
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~-~g~~~~~~~~n~Li 165 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVES-SGFEPDQYMMNRVL 165 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCcchHHHHHHH
Confidence 3578899999999999999999999998764 678999999999999999999999999999854 68999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 038852 183 NTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNL 262 (851)
Q Consensus 183 ~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~ 262 (851)
.+|++.|++++|+++|++|. .+|..+|+.|+.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|.+.|+.
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 99999999999999999995 3588899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 038852 263 EKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQM 342 (851)
Q Consensus 263 ~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m 342 (851)
+.+.+++..+.+.++.+|..+++.|+++|+++|++++|.++|++|.+. |..+||.||.+|++.|++++|+++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~----~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC----ChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999654 6699999999999999999999999999
Q ss_pred HHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038852 343 LDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREIS 422 (851)
Q Consensus 343 ~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 422 (851)
.+.|+.| |..+|+.++.+|++.|++++|.+++..+.+. ++.+|..+|+.|+++|++.|++++|+++|++|.
T Consensus 317 ~~~g~~p-----d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~----g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~ 387 (697)
T PLN03081 317 RDSGVSI-----DQFTFSIMIRIFSRLALLEHAKQAHAGLIRT----GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387 (697)
T ss_pred HHcCCCC-----CHHHHHHHHHHHHhccchHHHHHHHHHHHHh----CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 9999999 7899999999999999999999999999653 466799999999999999999999999999996
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhh-CCCCCCHH
Q 038852 423 TKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGE-KDPKPDFL 501 (851)
Q Consensus 423 ~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~-~~~~pd~~ 501 (851)
+ +|..+|+.||.+|++.|+.++|+++|++|.+.|+.|+..+|+.++.+|.+.|++++|.++|+.|.+ .|+.|+..
T Consensus 388 ~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~ 463 (697)
T PLN03081 388 R----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM 463 (697)
T ss_pred C----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc
Confidence 4 589999999999999999999999999999999999999999999999999999999999999986 59999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCCC
Q 038852 502 IYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAAPVP 570 (851)
Q Consensus 502 ~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~~~~~p~ 570 (851)
+|+.++++|++.|++++|.+++++| ++.++..+|..|+.++...|+++.|.++++++....|...+
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~ 529 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLN 529 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCc
Confidence 9999999999999999999998765 67899999999999999999999999999998776655443
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.4e-28 Score=305.56 Aligned_cols=432 Identities=16% Similarity=0.132 Sum_probs=226.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 038852 108 HNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCD 187 (851)
Q Consensus 108 ~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~ 187 (851)
..++..+.+.|++++|+.+++++.... ..+..+|+.++.+|...|++++|+++|+++++... .+...+..++.++..
T Consensus 435 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~ 511 (899)
T TIGR02917 435 LLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP--DFFPAAANLARIDIQ 511 (899)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHH
Confidence 344555566666666666666655432 33445555566666666666666666666554322 234445555555555
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038852 188 EGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANE 267 (851)
Q Consensus 188 ~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~ 267 (851)
.|++++|+++|+++++.++. +..++..++.++.+.|++++|+.+|+++.+.+.. +...+..++..|.+.|++++|++
T Consensus 512 ~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 588 (899)
T TIGR02917 512 EGNPDDAIQRFEKVLTIDPK--NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALA 588 (899)
T ss_pred CCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHH
Confidence 55555555555555554433 4445555555555555555555555555544332 34444455555555555555555
Q ss_pred HHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 038852 268 LFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQ 347 (851)
Q Consensus 268 ~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~ 347 (851)
+++++.+.... +..++..++.+|...|++++|++.|+++++.+. .+...+..++.+|...|++++|+++|+++++...
T Consensus 589 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 666 (899)
T TIGR02917 589 ILNEAADAAPD-SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELKP 666 (899)
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 55555443322 344455555555555555555555555544432 2233444445555555555555555555444211
Q ss_pred C--------------------------------CCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCH
Q 038852 348 P--------------------------------PNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDV 395 (851)
Q Consensus 348 ~--------------------------------p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~ 395 (851)
. ++ +...+..++.++...|++++|++.|+++....+ +.
T Consensus 667 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~------~~ 736 (899)
T TIGR02917 667 DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK----AALGFELEGDLYLRQKDYPAAIQAYRKALKRAP------SS 736 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC----ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC------Cc
Confidence 1 11 334444455555555555555555555543322 11
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHH
Q 038852 396 AGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNEL 475 (851)
Q Consensus 396 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~ 475 (851)
.++..++.++.+.|++++|.+.++++++.. ..+..++..++.+|.+.|++++|+++|+++++.+.. +...+..++..+
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~ 814 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLY 814 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 334445555555555555555555555432 224455555555555556666666666665555432 233333455555
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038852 476 ITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIE 555 (851)
Q Consensus 476 ~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~ 555 (851)
...|+ .+|+++++++.+.... +..++..+..++...|++++|+++|+++++.+.. +..++..++.+|.+.|++++|+
T Consensus 815 ~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 891 (899)
T TIGR02917 815 LELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEAR 891 (899)
T ss_pred HhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHH
Confidence 55555 5566666655554322 3445555666666666666666666666665533 5666666666666666666666
Q ss_pred HHHHhhh
Q 038852 556 RVLNADR 562 (851)
Q Consensus 556 ~ll~~~~ 562 (851)
+++++|+
T Consensus 892 ~~~~~~~ 898 (899)
T TIGR02917 892 KELDKLL 898 (899)
T ss_pred HHHHHHh
Confidence 6666654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.98 E-value=8.1e-28 Score=298.73 Aligned_cols=438 Identities=15% Similarity=0.150 Sum_probs=338.5
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTY 185 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~ 185 (851)
.+..+...+...|++++|+..+++++..... +......++..+.+.|++++|+++++++.... ..+..+|+.++.+|
T Consensus 399 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 475 (899)
T TIGR02917 399 ARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ--PDNASLHNLLGAIY 475 (899)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHHH
Confidence 4567788889999999999999999876533 34556678888999999999999999997643 35677899999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKA 265 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A 265 (851)
...|++++|+++|+++++.++. +...+..++..+...|++++|+++|+++++.+.. +..++..++..+.+.|++++|
T Consensus 476 ~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 552 (899)
T TIGR02917 476 LGKGDLAKAREAFEKALSIEPD--FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEA 552 (899)
T ss_pred HhCCCHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999988765 6778999999999999999999999999988665 788999999999999999999
Q ss_pred HHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038852 266 NELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDN 345 (851)
Q Consensus 266 ~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 345 (851)
..+|+++.+.+.. +...+..++..|.+.|++++|+++++++.+... .+..+|..++.+|...|++++|+.+|+++++.
T Consensus 553 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 630 (899)
T TIGR02917 553 VAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL 630 (899)
T ss_pred HHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999887655 677888899999999999999999999987653 46688999999999999999999999999875
Q ss_pred CCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038852 346 HQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKS 425 (851)
Q Consensus 346 ~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 425 (851)
. |+ +...+..++.+|...|++++|+.+|+++....+. +..++..++..+...|++++|+++++.+.+..
T Consensus 631 ~--~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 699 (899)
T TIGR02917 631 Q--PD----SALALLLLADAYAVMKNYAKAITSLKRALELKPD-----NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH 699 (899)
T ss_pred C--CC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4 32 6778999999999999999999999998776554 66777778888888888888888887777653
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 038852 426 LSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDV 505 (851)
Q Consensus 426 ~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ 505 (851)
..+...+..++.+|...|++++|+++|+++++.+... ..+..++.++...|++++|++.++++++.... +...+..
T Consensus 700 -~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~ 775 (899)
T TIGR02917 700 -PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS--QNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTA 775 (899)
T ss_pred -cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 2355666777777777777777777777777654333 22333555666666666666666666554322 4555555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC--------------------------------CCCHHHHHHHHHHHHhcCCHHH
Q 038852 506 VVRGLCNEGLFDMSKDIVDQMMKYGV--------------------------------GITPALQDFVRETFGKAGRGEE 553 (851)
Q Consensus 506 ll~a~~~~g~~~~A~~~~~~m~~~g~--------------------------------~~~~~~~~~L~~~~~~~G~~~e 553 (851)
+...|...|++++|+++|+++++... +.+...+..++.++.+.|++++
T Consensus 776 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 855 (899)
T TIGR02917 776 LAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADR 855 (899)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHH
Confidence 55556666666666666666554331 1223333445555666666666
Q ss_pred HHHHHHhhhhcCC
Q 038852 554 IERVLNADRWGYA 566 (851)
Q Consensus 554 A~~ll~~~~~~~~ 566 (851)
|.++|+++....+
T Consensus 856 A~~~~~~a~~~~~ 868 (899)
T TIGR02917 856 ALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHhhCC
Confidence 6666666655444
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=5.3e-27 Score=249.00 Aligned_cols=439 Identities=15% Similarity=0.130 Sum_probs=280.2
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTY 185 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~ 185 (851)
+...++..+.+.|+++.|++....+-..+ ..+....-.+-..+....+++.....-...++... --..+|..+++++
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~--q~ae~ysn~aN~~ 126 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNP--QGAEAYSNLANIL 126 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccc--hHHHHHHHHHHHH
Confidence 46778889999999999998766544333 22233333344455556666665554444433321 2355677777777
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKA 265 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A 265 (851)
...|++++|+.+|+.+++..+. .++.|..++.++...|+.+.|...|.+++..++. .....+.++......|++++|
T Consensus 127 kerg~~~~al~~y~~aiel~p~--fida~inla~al~~~~~~~~a~~~~~~alqlnP~-l~ca~s~lgnLlka~Grl~ea 203 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIELKPK--FIDAYINLAAALVTQGDLELAVQCFFEALQLNPD-LYCARSDLGNLLKAEGRLEEA 203 (966)
T ss_pred HHhchHHHHHHHHHHHHhcCch--hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcc-hhhhhcchhHHHHhhcccchh
Confidence 7777777777777777776555 5667777777777777777777777777765332 223344455556666777777
Q ss_pred HHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038852 266 NELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDN 345 (851)
Q Consensus 266 ~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 345 (851)
...|.++++.... -...|..|...+...|+.-+|+..|+++++.++..- ..|..|+..|...+.+++|+..|.+++.
T Consensus 204 ~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~-dAYiNLGnV~ke~~~~d~Avs~Y~rAl~- 280 (966)
T KOG4626|consen 204 KACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFL-DAYINLGNVYKEARIFDRAVSCYLRALN- 280 (966)
T ss_pred HHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcch-HHHhhHHHHHHHHhcchHHHHHHHHHHh-
Confidence 7777776665443 345666777777777777777777777776654332 3555577777777777777777777665
Q ss_pred CCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038852 346 HQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKS 425 (851)
Q Consensus 346 ~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 425 (851)
..|+ ...++..|+.+|...|.+|.|++.|+++++..+. -...|+.|..++...|++.+|++.|++.+...
T Consensus 281 -lrpn----~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-----F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 281 -LRPN----HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-----FPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred -cCCc----chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-----chHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 3343 5666777777777777777777777777665554 34567777777777777777777777776542
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC-HHHHH
Q 038852 426 LSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPD-FLIYD 504 (851)
Q Consensus 426 ~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd-~~~~~ 504 (851)
. ......+.|+.+|...|.+++|..+|.++++....-.... +.|...|-..|++++|+..|++.++. +|+ ...|+
T Consensus 351 p-~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~-nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~ 426 (966)
T KOG4626|consen 351 P-NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAH-NNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALS 426 (966)
T ss_pred C-ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhh-hhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHH
Confidence 2 2345666677777777777777777777776543333333 33666777777777777777776653 333 34566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCC
Q 038852 505 VVVRGLCNEGLFDMSKDIVDQMMKYGVGIT-PALQDFVRETFGKAGRGEEIERVLNADRWGYAAPV 569 (851)
Q Consensus 505 ~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~~~~~p 569 (851)
.+...|...|+.+.|+..+.+++..+ |. .+..+.|+.+|...|+..+|+.-|+...+.-|+-|
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQIN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhcC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence 66667777777777777777766533 22 22333466677777777777777777666555444
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=1.2e-23 Score=264.44 Aligned_cols=436 Identities=13% Similarity=0.054 Sum_probs=344.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHH----------
Q 038852 109 NRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSY---------- 178 (851)
Q Consensus 109 ~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~---------- 178 (851)
.+...+...|++++|+..|++++... ..+..++..|..+|.+.|++++|+..|+++++......+...|
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 34667888999999999999999765 3478889999999999999999999999998765433332222
Q ss_pred --HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038852 179 --NNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGF 256 (851)
Q Consensus 179 --~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~ 256 (851)
..+...+.+.|++++|++.|+++++.++. +...+..|+.++...|++++|++.|+++++.... +...+..++..|
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~--~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~ 429 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDNT--DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 23355778899999999999999998776 7778899999999999999999999999988655 667777888877
Q ss_pred HhcCCHHHHHHHHHHHHhcCCc--------cchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 038852 257 LNLGNLEKANELFDELKQRCLV--------YDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLK 328 (851)
Q Consensus 257 ~~~g~~~~A~~~~~~~~~~~~~--------~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~ 328 (851)
. .++.++|+.+++.+...... .....+..++..+...|++++|+++|+++++.++. +...+..++.+|.+
T Consensus 430 ~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 430 R-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQ 507 (1157)
T ss_pred H-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 5 46789999988765432111 11234566778899999999999999999998764 55677789999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCC-----ccCHHHHHHHHH
Q 038852 329 HEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPF-----AMDVAGYNNIIA 403 (851)
Q Consensus 329 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~d~~~~~~li~ 403 (851)
.|++++|+.+|+++++. .|+ +...+..++..+...++.++|+.+++++........+ ......+..++.
T Consensus 508 ~G~~~~A~~~l~~al~~--~P~----~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~ 581 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQ--KPN----DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETAN 581 (1157)
T ss_pred cCCHHHHHHHHHHHHHc--CCC----CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHH
Confidence 99999999999999874 343 6777778888888999999999999987432111100 001112345677
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHH
Q 038852 404 RYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAE 483 (851)
Q Consensus 404 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~ 483 (851)
.+...|++++|+++++. ...+...+..|+..|.+.|++++|+++|+++++..+... .....++.+|...|++++
T Consensus 582 ~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~-~a~~~la~~~~~~g~~~e 655 (1157)
T PRK11447 582 RLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNA-DARLGLIEVDIAQGDLAA 655 (1157)
T ss_pred HHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCCHHH
Confidence 88899999999999872 234566778899999999999999999999999876544 444558899999999999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHH
Q 038852 484 CAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGIT-----PALQDFVRETFGKAGRGEEIERVL 558 (851)
Q Consensus 484 A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~-----~~~~~~L~~~~~~~G~~~eA~~ll 558 (851)
|+++|+++.+.... +..++..+..++...|++++|+++|+++++...... ..++..++.++.+.|+.++|+++|
T Consensus 656 A~~~l~~ll~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y 734 (1157)
T PRK11447 656 ARAQLAKLPATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETY 734 (1157)
T ss_pred HHHHHHHHhccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999998875332 556777788899999999999999999987543222 235555789999999999999999
Q ss_pred Hhhhh
Q 038852 559 NADRW 563 (851)
Q Consensus 559 ~~~~~ 563 (851)
++...
T Consensus 735 ~~Al~ 739 (1157)
T PRK11447 735 KDAMV 739 (1157)
T ss_pred HHHHh
Confidence 99864
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=3e-25 Score=235.76 Aligned_cols=382 Identities=19% Similarity=0.199 Sum_probs=318.8
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHH-HHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVS-YNNLIN 183 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~-~~~Li~ 183 (851)
..|.++...+-..|++.+|+.+++.+++.. ...+..|..+..++...|+.+.|...|-+++.. .|+.+. ...+..
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql---nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL---NPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc---CcchhhhhcchhH
Confidence 457778899999999999999999999665 335788999999999999999999999988774 455443 345566
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 038852 184 TYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLE 263 (851)
Q Consensus 184 ~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~ 263 (851)
.+...|++++|...|.++++..+. =..+|..|+..+...|+.-+|+..|+++++.++. -...|..|+..|...+.++
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~--fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPC--FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCc--eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcch
Confidence 667789999999999999987654 4568999999999999999999999999987654 5678999999999999999
Q ss_pred HHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 038852 264 KANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQML 343 (851)
Q Consensus 264 ~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~ 343 (851)
+|+..|.+++..... ...++..+...|...|.+|.|++.|+++++..+... ..|+.|..++...|++.+|+++|.+++
T Consensus 270 ~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~-~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 270 RAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFP-DAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCCch-HHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 999999998876655 677888888899999999999999999998876443 688999999999999999999999999
Q ss_pred HcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038852 344 DNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREIST 423 (851)
Q Consensus 344 ~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 423 (851)
... |+ .....+.|+.+|...|++++|..+|+++.+..+. -...++.|...|-..|++++|+..|++.++
T Consensus 348 ~l~--p~----hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-----~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr 416 (966)
T KOG4626|consen 348 RLC--PN----HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-----FAAAHNNLASIYKQQGNLDDAIMCYKEALR 416 (966)
T ss_pred HhC--Cc----cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-----hhhhhhhHHHHHHhcccHHHHHHHHHHHHh
Confidence 853 33 6789999999999999999999999999876554 567789999999999999999999999985
Q ss_pred CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHH
Q 038852 424 KSLSPD-VTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLI 502 (851)
Q Consensus 424 ~g~~pd-~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~ 502 (851)
+.|+ ...|+.++..|...|+.+.|+..|.+++..++..... ++.|...|...|++.+|+.-|+..++.+... ...
T Consensus 417 --I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeA-hsNLasi~kDsGni~~AI~sY~~aLklkPDf-pdA 492 (966)
T KOG4626|consen 417 --IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEA-HSNLASIYKDSGNIPEAIQSYRTALKLKPDF-PDA 492 (966)
T ss_pred --cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHH-HhhHHHHhhccCCcHHHHHHHHHHHccCCCC-chh
Confidence 4666 5689999999999999999999999999877544444 4458899999999999999999998864331 234
Q ss_pred HHHHHHHH
Q 038852 503 YDVVVRGL 510 (851)
Q Consensus 503 ~~~ll~a~ 510 (851)
|..++.++
T Consensus 493 ~cNllh~l 500 (966)
T KOG4626|consen 493 YCNLLHCL 500 (966)
T ss_pred hhHHHHHH
Confidence 44454443
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=9.2e-23 Score=256.40 Aligned_cols=445 Identities=13% Similarity=0.072 Sum_probs=321.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYC 186 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~ 186 (851)
...+++.+.+.|++++|+..|++++.............+.......|++++|++.|+++++..+ .+...+..+..++.
T Consensus 115 ~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P--~~~~~~~~LA~ll~ 192 (1157)
T PRK11447 115 ALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP--GNTGLRNTLALLLF 192 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHH
Confidence 3566778899999999999999988654322121111122222345999999999999987643 35677889999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCC-------------------------------CCHHH---------------------H
Q 038852 187 DEGKVDEGMNVFRRIIETAPVG-------------------------------PSSNT---------------------Y 214 (851)
Q Consensus 187 ~~g~~~~A~~l~~~~~~~~~~~-------------------------------p~~~~---------------------~ 214 (851)
..|++++|+++|+++.+..... ++... .
T Consensus 193 ~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~ 272 (1157)
T PRK11447 193 SSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA 272 (1157)
T ss_pred ccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH
Confidence 9999999999999886532100 00000 0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccch-h-----------
Q 038852 215 RHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDG-V----------- 282 (851)
Q Consensus 215 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~-~----------- 282 (851)
..++.++...|++++|+..|+++++.... |..++..|+.+|.+.|++++|+..|+++++....... .
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 12245667789999999999999998665 8889999999999999999999999999886544221 1
Q ss_pred -hHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHH
Q 038852 283 -VNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNI 361 (851)
Q Consensus 283 -~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~ 361 (851)
....+...+.+.|++++|+++|+++++... .+...+..++.++...|++++|++.|+++++.. |+ +..++..
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~----~~~a~~~ 424 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PG----NTNAVRG 424 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC----CHHHHHH
Confidence 112335567889999999999999999875 345677789999999999999999999998743 32 3333333
Q ss_pred ------------------------------------------HHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHH
Q 038852 362 ------------------------------------------MVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYN 399 (851)
Q Consensus 362 ------------------------------------------L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~ 399 (851)
++..+...|++++|+++|+++....+. +...+.
T Consensus 425 L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-----~~~~~~ 499 (1157)
T PRK11447 425 LANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-----SVWLTY 499 (1157)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHH
Confidence 334455678888888888888776555 666777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------------------
Q 038852 400 NIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESG------------------- 460 (851)
Q Consensus 400 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~------------------- 460 (851)
.++.+|.+.|++++|+.+|+++++... .+...+..++..+...++.++|+.+++++....
T Consensus 500 ~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~ 578 (1157)
T PRK11447 500 RLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLE 578 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHH
Confidence 788888888888888888888776422 234444444444445555555555544321100
Q ss_pred --------------------CccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 038852 461 --------------------LRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSK 520 (851)
Q Consensus 461 --------------------~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~ 520 (851)
...+...+..+...|.+.|++++|+++|+++++.... +...+..++.+|...|++++|+
T Consensus 579 ~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 579 TANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 0112233345778888999999999999999987544 6788888999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCC
Q 038852 521 DIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAAPV 569 (851)
Q Consensus 521 ~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~~~~~p 569 (851)
++++.+.+.. +.+......++.++.+.|++++|.++|+++....++.+
T Consensus 658 ~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 658 AQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred HHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 9999887643 24556667788899999999999999999887766544
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=1.5e-22 Score=239.15 Aligned_cols=428 Identities=13% Similarity=0.089 Sum_probs=308.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYC 186 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~ 186 (851)
+......+.+.|++++|+..|++++.. .|+...|..+..+|.+.|++++|++.++++++... .+...|..+..+|.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p--~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP--DYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHH
Confidence 556788899999999999999998854 46777888899999999999999999999987532 35678899999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----------------------
Q 038852 187 DEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG----------------------- 243 (851)
Q Consensus 187 ~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~----------------------- 243 (851)
..|++++|+..|..+...++. +......++..+... .+.....++++....
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~--~~~~~~~~~~~~l~~----~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGF--RNEQSAQAVERLLKK----FAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAG 279 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHH----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhh
Confidence 999999999988877665543 221212222111111 111111111111100
Q ss_pred ------CCH---HHHHHHHHHH---HhcCCHHHHHHHHHHHHhcCC--ccchhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 244 ------ADS---LVYNNLISGF---LNLGNLEKANELFDELKQRCL--VYDGVVNATFMEWWFNQGKDKEAMQSYKSLME 309 (851)
Q Consensus 244 ------pd~---~~~~~Li~~~---~~~g~~~~A~~~~~~~~~~~~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~ 309 (851)
.+. ..+..+...+ ...+++++|+++|+++++.+. ..+...+..++.++...|++++|+..|+++++
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 280 LEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred hhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 000 0111111111 223678999999999887641 22456788888889999999999999999988
Q ss_pred hcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCC
Q 038852 310 RNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSK 389 (851)
Q Consensus 310 ~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~ 389 (851)
.+.. +...|..++.++...|++++|+.+|+++++. .|+ +..+|..++.+|...|++++|+..|++++...+.
T Consensus 360 l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~- 431 (615)
T TIGR00990 360 LDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKL--NSE----DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD- 431 (615)
T ss_pred cCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-
Confidence 7643 3467888899999999999999999999875 343 7889999999999999999999999999877665
Q ss_pred CCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchh---
Q 038852 390 PFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVS--- 466 (851)
Q Consensus 390 ~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--- 466 (851)
+...|..++.++.+.|++++|+..|+++++. ..-+..+|+.++.++...|++++|++.|+++++........
T Consensus 432 ----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~ 506 (615)
T TIGR00990 432 ----FIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMN 506 (615)
T ss_pred ----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccccccc
Confidence 6778888999999999999999999998875 23357788999999999999999999999999875432221
Q ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038852 467 ---FGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRE 543 (851)
Q Consensus 467 ---~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~ 543 (851)
++...+..+...|++++|+++++++++.+.. +...+..+..++...|++++|+++|+++++..-. ..+
T Consensus 507 ~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~-~~e------- 577 (615)
T TIGR00990 507 VLPLINKALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAELART-EGE------- 577 (615)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc-HHH-------
Confidence 1222223344569999999999998877543 4567888999999999999999999998864321 111
Q ss_pred HHHhcCCHHHHHHHHHhhhhcCCC
Q 038852 544 TFGKAGRGEEIERVLNADRWGYAA 567 (851)
Q Consensus 544 ~~~~~G~~~eA~~ll~~~~~~~~~ 567 (851)
...+..+.+|.++...+.+.||+
T Consensus 578 -~~~a~~~~~a~~~~~~~~~~~~~ 600 (615)
T TIGR00990 578 -LVQAISYAEATRTQIQVQEDYPV 600 (615)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhHH
Confidence 22333455666665555555553
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=5.9e-22 Score=234.17 Aligned_cols=404 Identities=13% Similarity=0.043 Sum_probs=304.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038852 141 TCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKG 220 (851)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~ 220 (851)
.+..++..+.+.|++++|++.|+++++. .|+...|..+..+|.+.|++++|++.++++++.++. +..+|..++.+
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~--~~~a~~~~a~a 203 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD--YSKALNRRANA 203 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHH
Confidence 4567788899999999999999999764 467888999999999999999999999999998766 78899999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------------------------c
Q 038852 221 FVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQ-------------------------R 275 (851)
Q Consensus 221 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-------------------------~ 275 (851)
|...|++++|+..|..+...+...+.. ...++..+.......++.+.++.-.. .
T Consensus 204 ~~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 204 YDGLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLED 282 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhc
Confidence 999999999999998776653221222 11222211111111111111111000 0
Q ss_pred CCccch---hhHHHHHHHH---HHcCCHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 038852 276 CLVYDG---VVNATFMEWW---FNQGKDKEAMQSYKSLMERN--FRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQ 347 (851)
Q Consensus 276 ~~~~d~---~~~~~li~~~---~~~g~~~~A~~l~~~~~~~~--~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~ 347 (851)
....+. ..+..+...+ ...+++++|+++|+++++.+ .......|+.++.++...|++++|+..|+++++.
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l-- 360 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL-- 360 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Confidence 000000 0111111111 22468999999999999865 2234567888999999999999999999999985
Q ss_pred CCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038852 348 PPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLS 427 (851)
Q Consensus 348 ~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 427 (851)
.|+ +...|..++.++...|++++|+.+|+++....+. +..+|..++.++...|++++|+..|++.++...
T Consensus 361 ~P~----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P- 430 (615)
T TIGR00990 361 DPR----VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-----DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP- 430 (615)
T ss_pred CCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-
Confidence 343 6779999999999999999999999999877555 778899999999999999999999999997632
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHH------
Q 038852 428 PDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFL------ 501 (851)
Q Consensus 428 pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~------ 501 (851)
.+...+..++.++.+.|++++|+.+|+++++.... +...+..+..+|...|++++|++.|++.++.....+..
T Consensus 431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~ 509 (615)
T TIGR00990 431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP 509 (615)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH
Confidence 35778888999999999999999999999987543 44556668999999999999999999998764332111
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhc
Q 038852 502 IYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWG 564 (851)
Q Consensus 502 ~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~ 564 (851)
.++..+..+...|++++|+++++++++.+. .+...+..++.++.+.|++++|+++|++..+.
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 122222233446999999999999988652 34456777999999999999999999997654
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=1.5e-20 Score=221.67 Aligned_cols=339 Identities=12% Similarity=0.053 Sum_probs=217.6
Q ss_pred CCccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 038852 103 PRLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLI 182 (851)
Q Consensus 103 ~~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li 182 (851)
...++...+..+.+.|++++|+.+++.++..... +...+..++.++...|++++|+..|+++++... .+...|..++
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P--~~~~a~~~la 117 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV--CQPEDVLLVA 117 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC--CChHHHHHHH
Confidence 3345666677777777777777777776655433 334444455555667777777777777766433 2345566677
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 038852 183 NTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNL 262 (851)
Q Consensus 183 ~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~ 262 (851)
.++...|++++|++.|+++++..+. +...+..++.++...|++++|+..++.+...... +...+..+ ..+...|++
T Consensus 118 ~~l~~~g~~~~Ai~~l~~Al~l~P~--~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~ 193 (656)
T PRK15174 118 SVLLKSKQYATVADLAEQAWLAFSG--NSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRL 193 (656)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCH
Confidence 7777777777777777777776555 5566777777777777777777777776665443 33333333 236667777
Q ss_pred HHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHH----HHHH
Q 038852 263 EKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEE----AQAL 338 (851)
Q Consensus 263 ~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~----A~~l 338 (851)
++|+.+++.+++.....+...+..++.++.+.|++++|+..|+++++.+. .+...+..++.+|...|++++ |+..
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~ 272 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEH 272 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence 77777777766654333334444555666777777777777777776653 245566667777777777764 6777
Q ss_pred HHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038852 339 FEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLL 418 (851)
Q Consensus 339 ~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~ 418 (851)
|+++++. .|+ +..++..++.++.+.|++++|+.+|+++....+. +...+..++.+|.+.|++++|+..|
T Consensus 273 ~~~Al~l--~P~----~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-----~~~a~~~La~~l~~~G~~~eA~~~l 341 (656)
T PRK15174 273 WRHALQF--NSD----NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-----LPYVRAMYARALRQVGQYTAASDEF 341 (656)
T ss_pred HHHHHhh--CCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7777663 343 5667777777777777777777777777665444 5556666777777777777777777
Q ss_pred HHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Q 038852 419 REISTKSLSPDV-TTFRTLIDAYLKVERIDDALELFNRMVESGLR 462 (851)
Q Consensus 419 ~~m~~~g~~pd~-~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~ 462 (851)
+++.+. .|+. ..+..++.++...|++++|++.|+++++...+
T Consensus 342 ~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 342 VQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 777654 2332 33334556667777777777777777765433
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=1.4e-20 Score=221.73 Aligned_cols=366 Identities=13% Similarity=0.047 Sum_probs=287.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038852 142 CNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGF 221 (851)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~ 221 (851)
...++..+.+.|++++|+.+++.++.... -+...+..++.++...|++++|+..|+++++.+|. +...|..++.++
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p--~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~--~~~a~~~la~~l 120 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAK--NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC--QPEDVLLVASVL 120 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCC--CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHH
Confidence 34456677789999999999999877543 34556777777888899999999999999998877 667889999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHH
Q 038852 222 VDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAM 301 (851)
Q Consensus 222 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~ 301 (851)
...|++++|++.|+++++.... +...+..++.++...|++++|...++.+...... +...+..+ ..+...|++++|+
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHH
Confidence 9999999999999999987555 6788889999999999999999999988776554 33334333 3478899999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHH----HHH
Q 038852 302 QSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSE----AIE 377 (851)
Q Consensus 302 ~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~----A~~ 377 (851)
.+++.+++.....+...+..++.++...|++++|+..|++++... |+ +...+..++.+|...|++++ |+.
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~----~~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--LD----GAALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CC----CHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 999998887654444556667788899999999999999999754 44 68889999999999999986 899
Q ss_pred HHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038852 378 TFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMV 457 (851)
Q Consensus 378 ~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~ 457 (851)
.|+++....+. +...+..++.++...|++++|+..++++++... .+...+..++.+|.+.|++++|+..|+++.
T Consensus 272 ~~~~Al~l~P~-----~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al 345 (656)
T PRK15174 272 HWRHALQFNSD-----NVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLA 345 (656)
T ss_pred HHHHHHhhCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999877665 788899999999999999999999999987632 246678888999999999999999999999
Q ss_pred HcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHH----HHHHHHHHhcCChHHHHHHHHHHH
Q 038852 458 ESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIY----DVVVRGLCNEGLFDMSKDIVDQMM 527 (851)
Q Consensus 458 ~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~----~~ll~a~~~~g~~~~A~~~~~~m~ 527 (851)
+.+.... .++..+..++...|++++|++.|+++++...+--...| ..+-.++...+..++....+.++.
T Consensus 346 ~~~P~~~-~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~ 418 (656)
T PRK15174 346 REKGVTS-KWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVA 418 (656)
T ss_pred HhCccch-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHh
Confidence 8764432 34444567889999999999999998876433222333 333344444555554434444444
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.91 E-value=5.9e-21 Score=214.21 Aligned_cols=448 Identities=14% Similarity=0.165 Sum_probs=344.7
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRP--TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLI 182 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li 182 (851)
..+..+...+...|++..+..+.+.++.....- -...|..++++|...|++++|...|-+.+....-. -+..+..|+
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~-~~l~~~Glg 349 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN-FVLPLVGLG 349 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC-ccccccchh
Confidence 455667777788889998888888877654221 23457788888889999999999988876543211 244566788
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038852 183 NTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAG----RIGEAVDLLRDMLSRQLGADSLVYNNLISGFLN 258 (851)
Q Consensus 183 ~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g----~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~ 258 (851)
..|++.|+++.+...|+++.+..+. +..+..+|+..|...+ ..++|..++.+.++..+. |...|..+..+|..
T Consensus 350 Qm~i~~~dle~s~~~fEkv~k~~p~--~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~-d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 350 QMYIKRGDLEESKFCFEKVLKQLPN--NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV-DSEAWLELAQLLEQ 426 (1018)
T ss_pred HHHHHhchHHHHHHHHHHHHHhCcc--hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHh
Confidence 8899999999999999999888766 6778888888887765 567888888888877554 88888888777766
Q ss_pred cCCHHHHHHHHHHHH----hcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh---cCCCCH------HHHHHHHHH
Q 038852 259 LGNLEKANELFDELK----QRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMER---NFRMTP------ATCNTLLEV 325 (851)
Q Consensus 259 ~g~~~~A~~~~~~~~----~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~---~~~~~~------~~~~~Li~~ 325 (851)
..-+. ++.+|..+. ..+...-..+.+.++..++..|++++|.+.|+.++.. ....+. .+-..+..+
T Consensus 427 ~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 427 TDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred cChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 44433 366666554 3344467788999999999999999999999988765 112222 123337788
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHH
Q 038852 326 LLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARY 405 (851)
Q Consensus 326 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~ 405 (851)
+...++++.|.+.|..+++.... -...|..++.+....+...+|..+++.+...+.. +...+..++..+
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkehp~------YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~-----np~arsl~G~~~ 574 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEHPG------YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS-----NPNARSLLGNLH 574 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHCch------hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC-----CcHHHHHHHHHH
Confidence 88888999999999999986433 4567777776666778899999999999877666 677788888899
Q ss_pred HhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHcCCccchhHHHHHH
Q 038852 406 CENEMLEEAEKLLREISTKS-LSPDVTTFRTLIDAYLK------------VERIDDALELFNRMVESGLRVVVSFGTKVF 472 (851)
Q Consensus 406 ~~~g~~~~A~~l~~~m~~~g-~~pd~~~~~~Ll~~~~~------------~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~ 472 (851)
.+..++..|.+-|+.+.+.- ..+|..+...|++.|.. .+.+++|+.+|.++++.+++..... +-++
T Consensus 575 l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAA-NGIg 653 (1018)
T KOG2002|consen 575 LKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAA-NGIG 653 (1018)
T ss_pred HhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhc-cchh
Confidence 99888988888777766542 22577787888886643 3457889999999998875544333 4478
Q ss_pred HHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCH
Q 038852 473 NELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMK-YGVGITPALQDFVRETFGKAGRG 551 (851)
Q Consensus 473 ~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~-~g~~~~~~~~~~L~~~~~~~G~~ 551 (851)
-+++..|++.+|.++|.++.+.... +..+|..+..+|...|+|..|+++|+...+ .....+..+.++|++++.++|++
T Consensus 654 iVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~ 732 (1018)
T KOG2002|consen 654 IVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKL 732 (1018)
T ss_pred hhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhH
Confidence 8899999999999999999987542 556888999999999999999999999875 45567889999999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCC
Q 038852 552 EEIERVLNADRWGYAAPVP 570 (851)
Q Consensus 552 ~eA~~ll~~~~~~~~~~p~ 570 (851)
.+|.+.+...+...|.++.
T Consensus 733 ~eak~~ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 733 QEAKEALLKARHLAPSNTS 751 (1018)
T ss_pred HHHHHHHHHHHHhCCccch
Confidence 9999999998888776654
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=4.7e-20 Score=221.98 Aligned_cols=159 Identities=17% Similarity=0.162 Sum_probs=94.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 038852 108 HNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCD 187 (851)
Q Consensus 108 ~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~ 187 (851)
...+..+...|+.++|++++.++.... ..+...+..+..++.+.|++++|+++|+++++..+ .+...+..++.++..
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~la~~l~~ 95 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP--QNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH
Confidence 344555566666666666666655322 33444566666666666666666666666655432 234445566666666
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038852 188 EGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANE 267 (851)
Q Consensus 188 ~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~ 267 (851)
.|++++|+..++++++..+. +.. +..++.++...|++++|+..|+++++..+. +...+..++.++...+..++|++
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~--~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPD--KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCC--CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHH
Confidence 66666666666666665544 444 666666666666666666666666665544 55555556666666666666666
Q ss_pred HHHHHH
Q 038852 268 LFDELK 273 (851)
Q Consensus 268 ~~~~~~ 273 (851)
.++++.
T Consensus 172 ~l~~~~ 177 (765)
T PRK10049 172 AIDDAN 177 (765)
T ss_pred HHHhCC
Confidence 665544
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=8.1e-21 Score=212.72 Aligned_cols=302 Identities=16% Similarity=0.197 Sum_probs=136.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhc
Q 038852 183 NTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGAD---SLVYNNLISGFLNL 259 (851)
Q Consensus 183 ~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~~~~~Li~~~~~~ 259 (851)
..+...|++++|+..|+++++.++. +..++..++..+...|++++|+++++.+++.....+ ..++..++..|.+.
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPE--TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 3345556666666666666555433 444555566666666666666666665555322111 13344555555555
Q ss_pred CCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhCCCHHHH
Q 038852 260 GNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMT----PATCNTLLEVLLKHEKKEEA 335 (851)
Q Consensus 260 g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~----~~~~~~Li~~~~~~g~~~~A 335 (851)
|++++|+.+|+++.+.... +..++..++.+|.+.|++++|+++|+.+.+.+.... ...+..++..+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDF-AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 5555555555555543221 233344444444444444444444444433322111 01223344444444555555
Q ss_pred HHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHH
Q 038852 336 QALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAE 415 (851)
Q Consensus 336 ~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~ 415 (851)
+++|+++++.. |+ +...+..++.+|.+.|++++|+++|+
T Consensus 200 ~~~~~~al~~~--p~----~~~~~~~la~~~~~~g~~~~A~~~~~----------------------------------- 238 (389)
T PRK11788 200 RALLKKALAAD--PQ----CVRASILLGDLALAQGDYAAAIEALE----------------------------------- 238 (389)
T ss_pred HHHHHHHHhHC--cC----CHHHHHHHHHHHHHCCCHHHHHHHHH-----------------------------------
Confidence 55555444421 11 23344444444444444444444444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 038852 416 KLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKD 495 (851)
Q Consensus 416 ~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~ 495 (851)
++.+.+......++..++.+|.+.|++++|+.+|+++.+.+... ..+..++..+.+.|++++|+++|+++++.
T Consensus 239 ----~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~--~~~~~la~~~~~~g~~~~A~~~l~~~l~~- 311 (389)
T PRK11788 239 ----RVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA--DLLLALAQLLEEQEGPEAAQALLREQLRR- 311 (389)
T ss_pred ----HHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHhCCHHHHHHHHHHHHHh-
Confidence 44432111112234444444445555555555555544433211 12233444455555555555555554443
Q ss_pred CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHH
Q 038852 496 PKPDFLIYDVVVRGLCN---EGLFDMSKDIVDQMMKYGVGITPA 536 (851)
Q Consensus 496 ~~pd~~~~~~ll~a~~~---~g~~~~A~~~~~~m~~~g~~~~~~ 536 (851)
.|+..++..++..+.. .|+.++++.+++++++.++.+++.
T Consensus 312 -~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 312 -HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred -CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 3444444444444332 234555555555555444444443
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=7.7e-21 Score=212.92 Aligned_cols=300 Identities=16% Similarity=0.159 Sum_probs=157.5
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCH
Q 038852 150 YRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGP--SSNTYRHLTKGFVDAGRI 227 (851)
Q Consensus 150 ~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p--~~~~~~~Li~~~~~~g~~ 227 (851)
...|++++|+..|+++++... .+..++..++..|...|++++|+.+++.+++...... +..++..++.+|...|++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDP--ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344445555555555443211 1233444444445555555555555554443221100 012344445555555555
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccc----hhhHHHHHHHHHHcCCHHHHHHH
Q 038852 228 GEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYD----GVVNATFMEWWFNQGKDKEAMQS 303 (851)
Q Consensus 228 ~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d----~~~~~~li~~~~~~g~~~~A~~l 303 (851)
++|+++|+++++.... +..++..++.+|.+.|++++|+++|+++.+.+...+ ...+..++..+.+.|++++|+++
T Consensus 124 ~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEGDF-AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 5555555555443222 344455555555555555555555555544332211 11233444555555666666666
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 038852 304 YKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAG 383 (851)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~ 383 (851)
|+++++.+. .+...+..++.+|.+.|++++|+++|+++.+.+... ...++..++.+|.+.|++++|+.+|+++.
T Consensus 203 ~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 203 LKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY-----LSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 665555432 233455556666666667777777766666532211 23455666666777777777777777665
Q ss_pred cCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcC
Q 038852 384 THPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLK---VERIDDALELFNRMVESG 460 (851)
Q Consensus 384 ~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~---~g~~~~A~~~~~~m~~~~ 460 (851)
...+ +...+..++..+.+.|++++|+.+|+++++. .|+...++.++..+.. .|+.++++.+|+++++.+
T Consensus 277 ~~~p------~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 277 EEYP------GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HhCC------CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 4422 3334466667777777777777777766654 4666666666665554 346777777777777655
Q ss_pred Cccchh
Q 038852 461 LRVVVS 466 (851)
Q Consensus 461 ~~~~~~ 466 (851)
+.++..
T Consensus 349 ~~~~p~ 354 (389)
T PRK11788 349 LKRKPR 354 (389)
T ss_pred HhCCCC
Confidence 444443
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=2.4e-19 Score=215.84 Aligned_cols=421 Identities=10% Similarity=0.065 Sum_probs=319.6
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038852 137 PTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRH 216 (851)
Q Consensus 137 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~ 216 (851)
.+.....-.+.+....|+.++|++++.++.... ..+...+..++.++...|++++|+++|+++++..|. +...+..
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~ 88 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ--NDDYQRG 88 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Confidence 344445556667788999999999999986422 245667999999999999999999999999998766 6778889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCC
Q 038852 217 LTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGK 296 (851)
Q Consensus 217 Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~ 296 (851)
++.++...|++++|+.+++++++.... +.. +..++.++...|+.++|+..|+++++.... +..++..++.++...+.
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCC
Confidence 999999999999999999999998655 667 889999999999999999999999998776 66777778888999999
Q ss_pred HHHHHHHHHHHHH-----hcCCCCHHHH---HHHHHHHHhCCCH---HHHHHHHHHHHHc-CCCCCCCccCHHHHHHHHH
Q 038852 297 DKEAMQSYKSLME-----RNFRMTPATC---NTLLEVLLKHEKK---EEAQALFEQMLDN-HQPPNIQAVNSDTFNIMVN 364 (851)
Q Consensus 297 ~~~A~~l~~~~~~-----~~~~~~~~~~---~~Li~~~~~~g~~---~~A~~l~~~m~~~-~~~p~~~~~~~~~~~~L~~ 364 (851)
.++|++.++.+.. .....+.... ..++..+...+++ ++|++.++.+++. ...|+............+.
T Consensus 166 ~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 166 SAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 9999998885443 1111111111 1122222333444 7899999998864 2333221101122222234
Q ss_pred HHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHH
Q 038852 365 ECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSP---DVTTFRTLIDAYL 441 (851)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~~~~~Ll~~~~ 441 (851)
++...|++++|+..|+++.......+ .+...+ +..+|...|++++|+.+|++++...... ....+..|+.++.
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P--~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIP--PWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCC--HHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 45677999999999999876532111 123333 5778999999999999999987754322 2456677777889
Q ss_pred HcCCHHHHHHHHHHHHHcCCc-----------cc---hhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 038852 442 KVERIDDALELFNRMVESGLR-----------VV---VSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVV 507 (851)
Q Consensus 442 ~~g~~~~A~~~~~~m~~~~~~-----------~~---~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll 507 (851)
..|++++|+++++++.+.... |+ ...+..++..+...|++++|+++++++.+.... +...+..++
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA 400 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYA 400 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 999999999999999876421 12 234455778899999999999999999887544 677888899
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCCC
Q 038852 508 RGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAAPVP 570 (851)
Q Consensus 508 ~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~~~~~p~ 570 (851)
..+...|++++|++.++++++.. +.+..++..++..+.+.|++++|+.+++++...+|+.+.
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999999865 345667777888999999999999999999998887763
No 22
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.3e-19 Score=203.45 Aligned_cols=443 Identities=16% Similarity=0.150 Sum_probs=343.4
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT 184 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~ 184 (851)
.+++.+.+++...|+++.|...|-+.+.....-.+..+..|+..|.+.|+++.|+..|+++++... -+..+...|+..
T Consensus 308 es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p--~~~etm~iLG~L 385 (1018)
T KOG2002|consen 308 ESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP--NNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc--chHHHHHHHHhH
Confidence 468889999999999999999999988665443356677889999999999999999999987643 356778888888
Q ss_pred HHHcC----ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hcCCCCCHHHHHHHHHHH
Q 038852 185 YCDEG----KVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDML----SRQLGADSLVYNNLISGF 256 (851)
Q Consensus 185 ~~~~g----~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~----~~g~~pd~~~~~~Li~~~ 256 (851)
|+..+ ..++|..++.+.++..++ |...|..+...|...+-+.. +.+|..++ ..+-..-....|.++...
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~~~--d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslh 462 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQTPV--DSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLH 462 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhcccc--cHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHH
Confidence 88775 678899999999988766 88999999888876554444 77776655 334445778999999999
Q ss_pred HhcCCHHHHHHHHHHHHhc---CCcc------chhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 038852 257 LNLGNLEKANELFDELKQR---CLVY------DGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLL 327 (851)
Q Consensus 257 ~~~g~~~~A~~~~~~~~~~---~~~~------d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~ 327 (851)
...|++++|...|+.++.. .... +..+-..+..++-..++++.|.+.|+.+++..+.. +..|..++....
T Consensus 463 f~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~Y-Id~ylRl~~ma~ 541 (1018)
T KOG2002|consen 463 FRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGY-IDAYLRLGCMAR 541 (1018)
T ss_pred HHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchh-HHHHHHhhHHHH
Confidence 9999999999999998866 1122 23345667778888899999999999999886421 233444443334
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHh
Q 038852 328 KHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCE 407 (851)
Q Consensus 328 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~ 407 (851)
..+...+|...++.++..+-. +..++..++..+.+..++..|.+-|+.+....... .|..+...|+..|..
T Consensus 542 ~k~~~~ea~~~lk~~l~~d~~------np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~---~D~YsliaLGN~~~~ 612 (1018)
T KOG2002|consen 542 DKNNLYEASLLLKDALNIDSS------NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTK---TDAYSLIALGNVYIQ 612 (1018)
T ss_pred hccCcHHHHHHHHHHHhcccC------CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccC---CchhHHHHhhHHHHH
Confidence 457888999999999875433 77899999999999999999999887776553333 377777777776543
Q ss_pred ------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHH
Q 038852 408 ------------NEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNEL 475 (851)
Q Consensus 408 ------------~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~ 475 (851)
.+..++|+.+|.++++... -|...-+.++.+++..|++.+|+.+|..+.+........|.| ++.+|
T Consensus 613 ~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lN-lah~~ 690 (1018)
T KOG2002|consen 613 ALHNPSRNPEKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLN-LAHCY 690 (1018)
T ss_pred HhcccccChHHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeee-HHHHH
Confidence 3457889999999987633 377788889999999999999999999999876544455555 89999
Q ss_pred HHcCCHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH--------------
Q 038852 476 ITKGKVAECAPILTKMGEK-DPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDF-------------- 540 (851)
Q Consensus 476 ~~~g~~~~A~~ll~~m~~~-~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-------------- 540 (851)
...|+|..|+++|+...+. ...-+..+...|.+++.+.|.+.+|.+.+..++..........++.
T Consensus 691 ~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~ 770 (1018)
T KOG2002|consen 691 VEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRL 770 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhc
Confidence 9999999999999997765 4455778899999999999999999999999987654444444443
Q ss_pred ----HHHHHHhcCCHHHHHHHHHhhhhc
Q 038852 541 ----VRETFGKAGRGEEIERVLNADRWG 564 (851)
Q Consensus 541 ----L~~~~~~~G~~~eA~~ll~~~~~~ 564 (851)
+-+.....+.+++|.++|..+...
T Consensus 771 ~k~t~eev~~a~~~le~a~r~F~~ls~~ 798 (1018)
T KOG2002|consen 771 EKRTLEEVLEAVKELEEARRLFTELSKN 798 (1018)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 122333445678888888887653
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.89 E-value=3.3e-18 Score=206.01 Aligned_cols=231 Identities=11% Similarity=0.036 Sum_probs=169.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHH
Q 038852 320 NTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYN 399 (851)
Q Consensus 320 ~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~ 399 (851)
..++.++.. ++.++|+..|.+.+... | +......++.++...|++++|+..|+++..... +...+.
T Consensus 481 ~~LG~~l~~-~~~~eAi~a~~~Al~~~--P-----d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p------~~~a~~ 546 (987)
T PRK09782 481 NRLAKCYRD-TLPGVALYAWLQAEQRQ--P-----DAWQHRAVAYQAYQVEDYATALAAWQKISLHDM------SNEDLL 546 (987)
T ss_pred HHHHHHHHh-CCcHHHHHHHHHHHHhC--C-----chHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC------CcHHHH
Confidence 333333333 45555666666655532 3 222344445555678888888888888754422 233456
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcC
Q 038852 400 NIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKG 479 (851)
Q Consensus 400 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g 479 (851)
.++.++.+.|++++|..+|+++++... .+...+..+...+.+.|++++|+..|+++++.++. ...+..+..++.+.|
T Consensus 547 ~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~--~~a~~~LA~~l~~lG 623 (987)
T PRK09782 547 AAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS--ANAYVARATIYRQRH 623 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHCC
Confidence 677778888888888888888887532 23334444445555669999999999999987763 555666889999999
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 480 KVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLN 559 (851)
Q Consensus 480 ~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~ 559 (851)
++++|+..|+++++.... +...+..+..++...|++++|+++|+++++.. +.+..++..++.++.+.|++++|++.|+
T Consensus 624 ~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 624 NVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999988554 66788888889999999999999999999864 3567788889999999999999999999
Q ss_pred hhhhcCCCCC
Q 038852 560 ADRWGYAAPV 569 (851)
Q Consensus 560 ~~~~~~~~~p 569 (851)
+.....|+..
T Consensus 702 ~Al~l~P~~a 711 (987)
T PRK09782 702 LVIDDIDNQA 711 (987)
T ss_pred HHHhcCCCCc
Confidence 9988776554
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.89 E-value=2.4e-18 Score=203.15 Aligned_cols=451 Identities=12% Similarity=0.076 Sum_probs=335.9
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTY 185 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~ 185 (851)
..+..+....+.|+++.|+..|+++++....-...++ .++..+...|+.++|+.++++++. ...........++..|
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~llalA~ly 112 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGLASAARAY 112 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHHHHH
Confidence 4567778889999999999999999876533222344 788888899999999999999862 2223444555557789
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKA 265 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A 265 (851)
...|++++|+++|+++++.++. |...+..++..+...++.++|++.+++++.... +...+..++..+...++..+|
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~--n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp--~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPT--NPDLISGMIMTQADAGRGGVVLKQATELAERDP--TVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc--chHHHHHHHHHHHhcchHHHH
Confidence 9999999999999999999887 566778889999999999999999999998743 445555555555556777679
Q ss_pred HHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHH------HHHHHHHH---H--hCCC---
Q 038852 266 NELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPAT------CNTLLEVL---L--KHEK--- 331 (851)
Q Consensus 266 ~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~------~~~Li~~~---~--~~g~--- 331 (851)
++.++++++.+.. +...+..++.++.+.|-...|+++.++-.+.- .+.... ...+++.- . ...+
T Consensus 189 L~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 189 LQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 9999999998766 78888899999999999999998876533211 000000 11111110 0 1122
Q ss_pred HHHHHHHHHHHHHcC-CCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCC
Q 038852 332 KEEAQALFEQMLDNH-QPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEM 410 (851)
Q Consensus 332 ~~~A~~l~~~m~~~~-~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~ 410 (851)
.+.|+.-++.++..- ..|.....-..+..-.+.++...|+++++++.|+.+.... ...-..+-..++++|...+.
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~----~~~P~y~~~a~adayl~~~~ 342 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEG----YKMPDYARRWAASAYIDRRL 342 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcC----CCCCHHHHHHHHHHHHhcCC
Confidence 345666666666522 2232111012234456668889999999999999996432 22234567789999999999
Q ss_pred HHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------ccc---hhHHHHH
Q 038852 411 LEEAEKLLREISTKS-----LSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGL-----------RVV---VSFGTKV 471 (851)
Q Consensus 411 ~~~A~~l~~~m~~~g-----~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~-----------~~~---~~~~~~L 471 (851)
.++|+.+|+.+.... ..++......|..+|...+++++|..+++++.+..+ .++ ......+
T Consensus 343 P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~ 422 (822)
T PRK14574 343 PEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLL 422 (822)
T ss_pred cHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHH
Confidence 999999999997642 122444467889999999999999999999998422 122 2233446
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 038852 472 FNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRG 551 (851)
Q Consensus 472 ~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~ 551 (851)
+..+...|++.+|++.++++...... |......+.+.+...|...+|+++++.+... -+.+..+....+.++...|++
T Consensus 423 a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~ 500 (822)
T PRK14574 423 VQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEW 500 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhH
Confidence 77889999999999999999887655 8889999999999999999999999777765 345566777789999999999
Q ss_pred HHHHHHHHhhhhcCCCCCCC
Q 038852 552 EEIERVLNADRWGYAAPVPP 571 (851)
Q Consensus 552 ~eA~~ll~~~~~~~~~~p~~ 571 (851)
++|.++++++...+|+.+..
T Consensus 501 ~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 501 HQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHHHHHHhhCCCchhH
Confidence 99999999999988876643
No 25
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=1.3e-18 Score=179.01 Aligned_cols=425 Identities=15% Similarity=0.152 Sum_probs=288.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCChhHHHHHHHHHHHcCC-CCCC--HHHHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTC-NAIIAAMYRAKRYDDAVALFKYFFDQAD-IVPN--IVSYNNLI 182 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~l~~~~~~~~~-~~pd--~~~~~~Li 182 (851)
+++++..|.....+.+|+..++-+++..+.++.-.+ ..+.+.+.+.+.|.+|+++|+.+++.-. +..+ +...+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 344555555555666666666666655555554322 2355667777888888888887766421 1112 34567777
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------CCHHHHH
Q 038852 183 NTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG------------ADSLVYN 250 (851)
Q Consensus 183 ~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~------------pd~~~~~ 250 (851)
..+++.|.+++|+..|+.+.+.. ||..+-..|+.++...|+-++..+.|.+|+..-.. ||....+
T Consensus 284 vtfiq~gqy~dainsfdh~m~~~---pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEEA---PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred eeEEecccchhhHhhHHHHHHhC---ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 77888999999999999998854 56666667777888889999999999998864322 2222222
Q ss_pred HHH-----HHHHhcC--CHHHHHHHHHHHHhcCCccch---------------------hhHHHHHHHHHHcCCHHHHHH
Q 038852 251 NLI-----SGFLNLG--NLEKANELFDELKQRCLVYDG---------------------VVNATFMEWWFNQGKDKEAMQ 302 (851)
Q Consensus 251 ~Li-----~~~~~~g--~~~~A~~~~~~~~~~~~~~d~---------------------~~~~~li~~~~~~g~~~~A~~ 302 (851)
..+ .-..+.+ +.++++-.-.+++.--+.+|- .+-..-...|.+.|+++.|++
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 211 1111111 122222211122211111110 000111235888999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHH------------------------------------HHHHHhCCCHHHHHHHHHHHHHcC
Q 038852 303 SYKSLMERNFRMTPATCNTL------------------------------------LEVLLKHEKKEEAQALFEQMLDNH 346 (851)
Q Consensus 303 l~~~~~~~~~~~~~~~~~~L------------------------------------i~~~~~~g~~~~A~~l~~~m~~~~ 346 (851)
+++-..+.+-+.....-+.| ......+|++++|.+.|++++..+
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd 520 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNND 520 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence 88877655433211111111 111224688999999999998764
Q ss_pred CCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038852 347 QPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSL 426 (851)
Q Consensus 347 ~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 426 (851)
.. ....+..++..+...|++++|+++|-++...... ++.+...+...|.-..+...|++++...... +
T Consensus 521 as------c~ealfniglt~e~~~~ldeald~f~klh~il~n-----n~evl~qianiye~led~aqaie~~~q~~sl-i 588 (840)
T KOG2003|consen 521 AS------CTEALFNIGLTAEALGNLDEALDCFLKLHAILLN-----NAEVLVQIANIYELLEDPAQAIELLMQANSL-I 588 (840)
T ss_pred hH------HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-C
Confidence 43 4567777888899999999999999887443222 6777888888999999999999999887764 5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 038852 427 SPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVV 506 (851)
Q Consensus 427 ~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~l 506 (851)
..|..++..|++.|-+.|+...|..++-+..+. +.-+..+...|...|+...-+++|+.+|++..- +.|+..-|..+
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlm 665 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLM 665 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHH
Confidence 667889999999999999999999887665543 233455555688888999999999999999765 57899999988
Q ss_pred HHHH-HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 038852 507 VRGL-CNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGR 550 (851)
Q Consensus 507 l~a~-~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~ 550 (851)
+..| .+.|++.+|.++|+...+ .++.+.+.+.+|+++....|.
T Consensus 666 iasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccc
Confidence 8766 568999999999999876 477888899999988887774
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.84 E-value=2.3e-16 Score=190.14 Aligned_cols=427 Identities=11% Similarity=0.007 Sum_probs=299.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc
Q 038852 110 RVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYR-AKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDE 188 (851)
Q Consensus 110 ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~ 188 (851)
+.+.+.+.+++++|+.++.++++.+ ..+......|..+|.. .++ ++|+.+++.. ++.|...+..++..|.+.
T Consensus 188 ~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~-----lk~d~~l~~ala~~yi~~ 260 (987)
T PRK09782 188 LLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG-----IFTDPQSRITYATALAYR 260 (987)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh-----cccCHHHHHHHHHHHHHC
Confidence 3778888999999999999988776 3445566777777777 366 7777776543 225778888999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCCCHHHHHH------------------------------HHHHHHHc--------------
Q 038852 189 GKVDEGMNVFRRIIETAPVGPSSNTYRH------------------------------LTKGFVDA-------------- 224 (851)
Q Consensus 189 g~~~~A~~l~~~~~~~~~~~p~~~~~~~------------------------------Li~~~~~~-------------- 224 (851)
|+.++|.++++++.......|+..+|.. ++..+.+.
T Consensus 261 G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (987)
T PRK09782 261 GEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLP 340 (987)
T ss_pred CCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 9999999888876443222121111110 12222222
Q ss_pred -------------------------------------------------CCHHHHHHHHHHHHhc-C-CCCCHHHHHHHH
Q 038852 225 -------------------------------------------------GRIGEAVDLLRDMLSR-Q-LGADSLVYNNLI 253 (851)
Q Consensus 225 -------------------------------------------------g~~~~A~~l~~~m~~~-g-~~pd~~~~~~Li 253 (851)
|+.++|..+|+..... + ...+......|+
T Consensus 341 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~ 420 (987)
T PRK09782 341 ANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLA 420 (987)
T ss_pred cchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHH
Confidence 3344444444444331 0 111222333455
Q ss_pred HHHHhcCC---HHHHHHH----------------------HHHHHhc-CC-cc--chhhHHHHHHHHHHcCCHHHHHHHH
Q 038852 254 SGFLNLGN---LEKANEL----------------------FDELKQR-CL-VY--DGVVNATFMEWWFNQGKDKEAMQSY 304 (851)
Q Consensus 254 ~~~~~~g~---~~~A~~~----------------------~~~~~~~-~~-~~--d~~~~~~li~~~~~~g~~~~A~~l~ 304 (851)
..|.+.+. ..+++.+ ++.+... .. .. +...+..++.++.. ++.++|+..|
T Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~ 499 (987)
T PRK09782 421 SLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAW 499 (987)
T ss_pred HHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHH
Confidence 55554443 1222111 1111111 00 11 45566777777766 7888999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhcc
Q 038852 305 KSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGT 384 (851)
Q Consensus 305 ~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~ 384 (851)
.+.....+ +......++.++...|++++|+..|+++... .+ +...+..++.++.+.|++++|+.+|+++..
T Consensus 500 ~~Al~~~P--d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p-----~~~a~~~la~all~~Gd~~eA~~~l~qAL~ 570 (987)
T PRK09782 500 LQAEQRQP--DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DM-----SNEDLLAAANTAQAAGNGAARDRWLQQAEQ 570 (987)
T ss_pred HHHHHhCC--chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CC-----CcHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88887764 3333444555667899999999999998653 22 334567888999999999999999999977
Q ss_pred CCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccc
Q 038852 385 HPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVV 464 (851)
Q Consensus 385 ~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~ 464 (851)
..+. +...+..+...+.+.|++++|+..|++.++. .|+...|..++.++.+.|++++|+..|+++++.++...
T Consensus 571 l~P~-----~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~ 643 (987)
T PRK09782 571 RGLG-----DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS 643 (987)
T ss_pred cCCc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 5433 3344444555555679999999999999975 46788999999999999999999999999999875544
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038852 465 VSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRET 544 (851)
Q Consensus 465 ~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~ 544 (851)
..+..+..++...|++++|+++|+++++.... +...+..+..++...|++++|+..|+++++.. +....+.....+.
T Consensus 644 -~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~-P~~a~i~~~~g~~ 720 (987)
T PRK09782 644 -NYQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVIDDI-DNQALITPLTPEQ 720 (987)
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCchhhhhhhHH
Confidence 45556888999999999999999999987554 67888999999999999999999999999865 2344566667888
Q ss_pred HHhcCCHHHHHHHHHhhhh
Q 038852 545 FGKAGRGEEIERVLNADRW 563 (851)
Q Consensus 545 ~~~~G~~~eA~~ll~~~~~ 563 (851)
+.+..+++.|.+-++....
T Consensus 721 ~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 721 NQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 8888888888888877543
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=3.9e-16 Score=184.59 Aligned_cols=412 Identities=12% Similarity=0.065 Sum_probs=300.7
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 038852 148 AMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRI 227 (851)
Q Consensus 148 ~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~ 227 (851)
..++.|+++.|+..|+++++.....+ ...+ .++..+...|+.++|+.++++++. +..........++..|...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~-~av~-dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQS-GQVD-DWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccch-hhHH-HHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHcCCH
Confidence 46799999999999999987543221 1233 888888899999999999999983 3323555555557799999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 038852 228 GEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSL 307 (851)
Q Consensus 228 ~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~ 307 (851)
++|+++|+++++.... +...+..++..|...++.++|++.++++...... ...+..++..+...++..+|++.|+++
T Consensus 119 d~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~--~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 119 DQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPT--VQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc--hHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 9999999999999777 6788888899999999999999999999887554 344455555555577777799999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-CCccCHHHHHHHHHHH---H--HcC---ChHHHHHH
Q 038852 308 MERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPN-IQAVNSDTFNIMVNEC---F--KHG---KFSEAIET 378 (851)
Q Consensus 308 ~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~~~~~~~~~~~L~~~~---~--~~g---~~~~A~~~ 378 (851)
++.++ .+...+..++.++.+.|-...|+++.++-.+. +.+. ...+.......+++.- . ... -.|.|+.-
T Consensus 196 l~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~ 273 (822)
T PRK14574 196 VRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD 273 (822)
T ss_pred HHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 99975 35567777899999999999999877753321 1110 0000000111111100 0 111 24556666
Q ss_pred HHHhccCCCCCCC-ccC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038852 379 FKKAGTHPKSKPF-AMD-VAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRM 456 (851)
Q Consensus 379 ~~~~~~~~~~~~~-~~d-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m 456 (851)
++.+.......+- .++ ..+..-.+-++...|+++++++.|+.|...+.+.-..+-..++++|...+..++|+.+|+.+
T Consensus 274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 6666542222110 001 22334556678889999999999999998876655668889999999999999999999999
Q ss_pred HHcCC-----ccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCC-------------CCCCHHH-HHHHHHHHHhcCChH
Q 038852 457 VESGL-----RVVVSFGTKVFNELITKGKVAECAPILTKMGEKD-------------PKPDFLI-YDVVVRGLCNEGLFD 517 (851)
Q Consensus 457 ~~~~~-----~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~-------------~~pd~~~-~~~ll~a~~~~g~~~ 517 (851)
..... .++......|+.+|...+++++|..+++++.+.- ..||-.. +..++..+...|++.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~ 433 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLP 433 (822)
T ss_pred hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHH
Confidence 77542 2234334678999999999999999999998732 1233333 344566778899999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCC
Q 038852 518 MSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAAPV 569 (851)
Q Consensus 518 ~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~~~~~p 569 (851)
+|++.+++++... +-+..+...+++++...|+..+|+++++......|+..
T Consensus 434 ~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~ 484 (822)
T PRK14574 434 TAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSL 484 (822)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccH
Confidence 9999999998754 57888999999999999999999999988777665543
No 28
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2e-16 Score=164.77 Aligned_cols=418 Identities=13% Similarity=0.132 Sum_probs=279.5
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---------------HcCChhHHHHHH---HHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMY---------------RAKRYDDAVALF---KYFF 166 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~---------------~~g~~~~A~~l~---~~~~ 166 (851)
.+...+..+++....++.|...++..... -..|..+...|. +...+..-...| ++-+
T Consensus 79 ~~~y~laks~fd~kEf~Raa~fL~~~~s~-----k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~~l 153 (559)
T KOG1155|consen 79 KDIYLLAKSYFDCKEFERAAFFLQNCKSK-----KSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNKPL 153 (559)
T ss_pred cchhhhHhhhhhhHHHHHHHHHHHhcchH-----HHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhhHH
Confidence 45677888888899999888777664421 111111111111 111111111111 1111
Q ss_pred H--cCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH-------------------------
Q 038852 167 D--QADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTK------------------------- 219 (851)
Q Consensus 167 ~--~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~------------------------- 219 (851)
+ ..+...|...+...+.++.+.|..+.|++.|.+.+...|. .-.+|..|..
T Consensus 154 e~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~--~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 154 ESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPW--FWSAWLELSELITDIEILSILVVGLPSDMHWMKKF 231 (559)
T ss_pred HHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCc--chHHHHHHHHhhchHHHHHHHHhcCcccchHHHHH
Confidence 1 1233456666677777788889999999999988876554 3334433322
Q ss_pred ----HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc--cchhhHHHHHHHHHH
Q 038852 220 ----GFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLV--YDGVVNATFMEWWFN 293 (851)
Q Consensus 220 ----~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~--~d~~~~~~li~~~~~ 293 (851)
++-.....++++.-.......|+.-+...-+..+.+.....|++.|+.+|+++.+.++- -|..+|..++ |.+
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~ 309 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHH
Confidence 23333445566666666666666655555555666667777888888888888776432 2455555554 333
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChH
Q 038852 294 QGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFS 373 (851)
Q Consensus 294 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~ 373 (851)
..+-+.+. +-..+...+ +.-..|+..+++-|.-.++.++|+.+|+++++.+.. ...+|+.++.-|...++..
T Consensus 310 ~~~skLs~-LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~------~~~aWTLmGHEyvEmKNt~ 381 (559)
T KOG1155|consen 310 NDKSKLSY-LAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK------YLSAWTLMGHEYVEMKNTH 381 (559)
T ss_pred hhhHHHHH-HHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc------hhHHHHHhhHHHHHhcccH
Confidence 32222111 111111111 122357777888888889999999999999985544 5779999999999999999
Q ss_pred HHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 038852 374 EAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELF 453 (851)
Q Consensus 374 ~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~ 453 (851)
.|++.|+.+.+..+. |...|..|+.+|.-.+...-|+-.|++..... +-|...|.+|+.+|.+.++.++|++.|
T Consensus 382 AAi~sYRrAvdi~p~-----DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCy 455 (559)
T KOG1155|consen 382 AAIESYRRAVDINPR-----DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCY 455 (559)
T ss_pred HHHHHHHHHHhcCch-----hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHH
Confidence 999999999888776 89999999999999999999999999998753 347889999999999999999999999
Q ss_pred HHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhC----CCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHH
Q 038852 454 NRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEK----DPKPDFL--IYDVVVRGLCNEGLFDMSKDIVDQMM 527 (851)
Q Consensus 454 ~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~----~~~pd~~--~~~~ll~a~~~~g~~~~A~~~~~~m~ 527 (851)
++++..+-. ....+..|+..|.+.++..+|...|++.++. |..-+.. ....|..-+.+.+++++|..+.....
T Consensus 456 krai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 456 KRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 999987733 4455566899999999999999998887662 3332322 22234555677888888877776665
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhc
Q 038852 528 KYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWG 564 (851)
Q Consensus 528 ~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~ 564 (851)
+. .-..+||..++++++..
T Consensus 535 ~~------------------~~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 535 KG------------------ETECEEAKALLREIRKI 553 (559)
T ss_pred cC------------------CchHHHHHHHHHHHHHh
Confidence 43 23567888888887653
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=9e-17 Score=165.69 Aligned_cols=399 Identities=17% Similarity=0.163 Sum_probs=280.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 038852 110 RVQSLIRAGDLDAASYLARQAVFSRIRPT----VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTY 185 (851)
Q Consensus 110 ll~~l~~~g~~~~A~~l~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~ 185 (851)
....+++.+++.+|++.++.++..-...+ ..+.+.+...+.+.|.|++|+..|+..++. .||..+-..|+-++
T Consensus 243 igni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~---~pn~~a~~nl~i~~ 319 (840)
T KOG2003|consen 243 IGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE---APNFIAALNLIICA 319 (840)
T ss_pred ecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh---CccHHhhhhhhhhh
Confidence 34456778899999999998876543222 345666777778999999999999998774 37877777777778
Q ss_pred HHcCChHHHHHHHHHHHHhCCC-----------CCCHHHHHHHH-----HHHHHcC--CHHHHHHHHHHHHhcCCCCCHH
Q 038852 186 CDEGKVDEGMNVFRRIIETAPV-----------GPSSNTYRHLT-----KGFVDAG--RIGEAVDLLRDMLSRQLGADSL 247 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~-----------~p~~~~~~~Li-----~~~~~~g--~~~~A~~l~~~m~~~g~~pd~~ 247 (851)
...|+-++..+.|.+|+...+. .|+....+..| +-..+.+ +-++++-.-.+++.--+.||-.
T Consensus 320 f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa 399 (840)
T KOG2003|consen 320 FAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA 399 (840)
T ss_pred eecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh
Confidence 8889999999999999865321 12322222222 1111111 1222222222222211222210
Q ss_pred ---------------------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHH-------------------
Q 038852 248 ---------------------VYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATF------------------- 287 (851)
Q Consensus 248 ---------------------~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l------------------- 287 (851)
.-.+-..-|.+.|+++.|+++++-+.+.+-.......+.|
T Consensus 400 ~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqya 479 (840)
T KOG2003|consen 400 AGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYA 479 (840)
T ss_pred cccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHH
Confidence 0111234567888999888888776654322111111111
Q ss_pred -----------------HHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 038852 288 -----------------MEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPN 350 (851)
Q Consensus 288 -----------------i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~ 350 (851)
.+..+..|++++|.+.|++++..+.......|| +...+...|++++|+++|-++...-..
T Consensus 480 d~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~n-- 556 (840)
T KOG2003|consen 480 DIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLN-- 556 (840)
T ss_pred HHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHh--
Confidence 112234689999999999999887654444555 566678899999999999887543222
Q ss_pred CCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 038852 351 IQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDV 430 (851)
Q Consensus 351 ~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 430 (851)
+..++..++..|....+...|++++..+....+. |..+...|.+.|-+.|+-..|+..+-+-.+. +.-+.
T Consensus 557 ----n~evl~qianiye~led~aqaie~~~q~~slip~-----dp~ilskl~dlydqegdksqafq~~ydsyry-fp~ni 626 (840)
T KOG2003|consen 557 ----NAEVLVQIANIYELLEDPAQAIELLMQANSLIPN-----DPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNI 626 (840)
T ss_pred ----hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCC-----CHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcch
Confidence 7889999999999999999999999998766555 8899999999999999999999887766543 56688
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccc-hhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 038852 431 TTFRTLIDAYLKVERIDDALELFNRMVESGLRVV-VSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRG 509 (851)
Q Consensus 431 ~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a 509 (851)
.+...|+..|....-+++|+.+|+++.-. .|+ ..|-.++..|+.+.|++.+|+++|+...++ +.-|...+..|++.
T Consensus 627 e~iewl~ayyidtqf~ekai~y~ekaali--qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri 703 (840)
T KOG2003|consen 627 ETIEWLAAYYIDTQFSEKAINYFEKAALI--QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRI 703 (840)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhc--CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHH
Confidence 99999999999999999999999998764 344 455556777888999999999999998776 44488888889999
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 038852 510 LCNEGLFDMSKDIVDQMMK 528 (851)
Q Consensus 510 ~~~~g~~~~A~~~~~~m~~ 528 (851)
|...|. .++.++-+++.+
T Consensus 704 ~~dlgl-~d~key~~klek 721 (840)
T KOG2003|consen 704 AGDLGL-KDAKEYADKLEK 721 (840)
T ss_pred hccccc-hhHHHHHHHHHH
Confidence 888875 445666555543
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.81 E-value=9.2e-16 Score=172.04 Aligned_cols=376 Identities=13% Similarity=0.142 Sum_probs=290.4
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT 184 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~ 184 (851)
..+...++.+...|++++|..++.++++.. ..+...|..|..+|-..|+.++++..+-.+-.. .+.|...|..+...
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--NPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCChHHHHHHHHH
Confidence 456677788888899999999999999876 456788999999999999999999887765333 33467889999999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH----HHHHHHHHhcC
Q 038852 185 YCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVY----NNLISGFLNLG 260 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~----~~Li~~~~~~g 260 (851)
....|+++.|.-+|.+++..+|. +...+..-+..|-+.|+...|.+.|.++.......|..-+ ..++..|...+
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p~--n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANPS--NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998766 7777777888999999999999999999988653333322 33566677888
Q ss_pred CHHHHHHHHHHHHhc-CCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHH--------------------
Q 038852 261 NLEKANELFDELKQR-CLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATC-------------------- 319 (851)
Q Consensus 261 ~~~~A~~~~~~~~~~-~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~-------------------- 319 (851)
+-+.|.+.++..... +-..+...++.++.+|.+...++.|..............|..-|
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL 374 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence 889999999988763 22346678889999999999999999998887762222222111
Q ss_pred ------HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCcc
Q 038852 320 ------NTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAM 393 (851)
Q Consensus 320 ------~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 393 (851)
..++-++...+..+....+.......++.+.. +...|..++.+|.+.|++++|+++|..+.......
T Consensus 375 s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d---~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~---- 447 (895)
T KOG2076|consen 375 SYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSD---DVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ---- 447 (895)
T ss_pred CccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhh---hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc----
Confidence 12444555556666666666666666665543 67889999999999999999999999997664432
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------Cccch
Q 038852 394 DVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESG--------LRVVV 465 (851)
Q Consensus 394 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~--------~~~~~ 465 (851)
+...|..++.+|...|.+++|...|++++... +-+...-..|...+.+.|+.++|.++++.+..-+ ..+..
T Consensus 448 ~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ 526 (895)
T KOG2076|consen 448 NAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPER 526 (895)
T ss_pred chhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHH
Confidence 57789999999999999999999999998752 2245566778888999999999999999976433 22344
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 038852 466 SFGTKVFNELITKGKVAECAPILTKMGE 493 (851)
Q Consensus 466 ~~~~~L~~~~~~~g~~~~A~~ll~~m~~ 493 (851)
.+.......|...|+.++-+++...|+.
T Consensus 527 ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 527 RILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4444566778889998887777666654
No 31
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=3.4e-16 Score=163.88 Aligned_cols=400 Identities=15% Similarity=0.157 Sum_probs=275.9
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHH
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRPT-VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN-IVSYNNLIN 183 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd-~~~~~~Li~ 183 (851)
.+.+..+.+.++|++++|++.+..++.. .|| ...|.....+|...|+|++.++.-.++++ +.|+ +..++.-..
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALE---l~P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALE---LNPDYVKALLRRAS 191 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh---cCcHHHHHHHHHHH
Confidence 4566778888999999999999998854 455 66777788888888999998888888766 3455 456777777
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCCHHHHHHHH--------
Q 038852 184 TYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQ--LGADSLVYNNLI-------- 253 (851)
Q Consensus 184 ~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g--~~pd~~~~~~Li-------- 253 (851)
++...|++++|+.-+.-..-.+++. |. ....++.-..+.--..++.+.|. +.+ +-|......+..
T Consensus 192 A~E~lg~~~eal~D~tv~ci~~~F~-n~-s~~~~~eR~Lkk~a~~ka~e~~k---~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVTVLCILEGFQ-NA-SIEPMAERVLKKQAMKKAKEKLK---ENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred HHHhhccHHHHHHhhhHHHHhhhcc-cc-hhHHHHHHHHHHHHHHHHHHhhc---ccCCCCCCcHHHHHHHHhhcccccc
Confidence 8888888888765444332222221 11 11111111111111111222221 111 112222111111
Q ss_pred ---------------HHH----Hhc-CCHHHHHHHHHHHHhc---CCcc---c------hhhHHHHHHHHHHcCCHHHHH
Q 038852 254 ---------------SGF----LNL-GNLEKANELFDELKQR---CLVY---D------GVVNATFMEWWFNQGKDKEAM 301 (851)
Q Consensus 254 ---------------~~~----~~~-g~~~~A~~~~~~~~~~---~~~~---d------~~~~~~li~~~~~~g~~~~A~ 301 (851)
.++ ... ..+.+|...+.+-... .... | .......+..+.-+|+...|.
T Consensus 267 ~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~ 346 (606)
T KOG0547|consen 267 PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQ 346 (606)
T ss_pred ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhh
Confidence 111 110 1234444444332211 0111 1 223333344566789999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 038852 302 QSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKK 381 (851)
Q Consensus 302 ~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 381 (851)
+.|+.+++.+..++. .|..+..+|....+.++.+..|.++.+. .|. |..+|..-+.++.-.+++++|+.-|++
T Consensus 347 ~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~l--dp~----n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 347 EDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDL--DPE----NPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred hhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhc--CCC----CCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 999999998876553 3778889999999999999999999884 444 889999999999999999999999999
Q ss_pred hccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 038852 382 AGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGL 461 (851)
Q Consensus 382 ~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~ 461 (851)
+....+. ++..|.-+..+..+.+.+++++..|++.+++ ++....+|+..+.++...+++++|++.|+.+++...
T Consensus 420 ai~L~pe-----~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 420 AISLDPE-----NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HhhcChh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 9888776 7888888888888999999999999999986 555688999999999999999999999999998654
Q ss_pred cc-----ch-hHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038852 462 RV-----VV-SFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKY 529 (851)
Q Consensus 462 ~~-----~~-~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~ 529 (851)
.- +. .+....+..+--.+++..|+++++++++.+.+ ....|..|...-...|+.++|+++|++....
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred ccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 31 11 11111112222358999999999999998766 5678899999999999999999999998753
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.80 E-value=1.6e-14 Score=155.83 Aligned_cols=422 Identities=12% Similarity=0.072 Sum_probs=209.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 038852 118 GDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNV 197 (851)
Q Consensus 118 g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l 197 (851)
.+.+.|+.++.+++.. +..+...| -+|.+..-|+.|.++++++.+. +..+...|.+-...-...|+.+...++
T Consensus 390 E~~~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 390 EEPEDARILLERAVEC-CPQSMDLW----LALARLETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred cChHHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 3444455555555432 12233333 2445566677777777776442 445566666666656666777777776
Q ss_pred HHHHHH---hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038852 198 FRRIIE---TAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGAD--SLVYNNLISGFLNLGNLEKANELFDEL 272 (851)
Q Consensus 198 ~~~~~~---~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~~~~~Li~~~~~~g~~~~A~~~~~~~ 272 (851)
+++.+. .+++..+...|..-+..|-+.|..-.+..+....+..|+.-. ..||..-...|.+.+.++-|+.+|..+
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 666532 345555666666666666666666666666666666554411 245666666666666666666666665
Q ss_pred HhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCC
Q 038852 273 KQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQ 352 (851)
Q Consensus 273 ~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ 352 (851)
+..... +..+|...+..-...|..++...+|.+++..-++ ....|...+..+-..|+...|..++..+.+....
T Consensus 543 lqvfp~-k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pn---- 616 (913)
T KOG0495|consen 543 LQVFPC-KKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPN---- 616 (913)
T ss_pred Hhhccc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC----
Confidence 554333 3444444444444445555555555554444322 2233444444444445555555555554443221
Q ss_pred ccCHHHHHHHHHHHHHcCChHHHHHHHHHh---------------------------------ccCCCCCCCccCHHHHH
Q 038852 353 AVNSDTFNIMVNECFKHGKFSEAIETFKKA---------------------------------GTHPKSKPFAMDVAGYN 399 (851)
Q Consensus 353 ~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~---------------------------------~~~~~~~~~~~d~~~~~ 399 (851)
+..+|...+........+++|..+|.++ +...+. -...|.
T Consensus 617 --seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~-----f~Kl~l 689 (913)
T KOG0495|consen 617 --SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD-----FHKLWL 689 (913)
T ss_pred --cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc-----hHHHHH
Confidence 3444444444444445555555555444 433332 223344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcC
Q 038852 400 NIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKG 479 (851)
Q Consensus 400 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g 479 (851)
.+...+...++++.|.+.|..-.+. +.-..-.|..|...-.+.|.+.+|..+|++..-.+++....|.. .+++-.+.|
T Consensus 690 mlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle-~Ir~ElR~g 767 (913)
T KOG0495|consen 690 MLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLE-SIRMELRAG 767 (913)
T ss_pred HHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHH-HHHHHHHcC
Confidence 4444444444444444444433322 22223344444444445555555555555555555443333332 445555555
Q ss_pred CHHHHHHHHHHHhhCCC-----------------------------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038852 480 KVAECAPILTKMGEKDP-----------------------------KPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYG 530 (851)
Q Consensus 480 ~~~~A~~ll~~m~~~~~-----------------------------~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g 530 (851)
+.+.|..++.+++..-. .-|...+..+...|....++++|++.|.+.++.+
T Consensus 768 n~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 768 NKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred CHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 55555555554433210 1122333334444444445555555555555433
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 038852 531 VGITPALQDFVRETFGKAGRGEEIERVLNADR 562 (851)
Q Consensus 531 ~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~ 562 (851)
....+++..+...+.+.|.-++-.+++++..
T Consensus 848 -~d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 848 -PDNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred -CccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 1223344444445555555555555555443
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.80 E-value=7.5e-16 Score=172.77 Aligned_cols=379 Identities=13% Similarity=0.115 Sum_probs=209.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038852 140 FTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTK 219 (851)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~ 219 (851)
.......+.+...|++++|.+++.++++... .+...|..|+.+|-..|+.+++...+-.+-..++. |...|..+..
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp--~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~--d~e~W~~lad 215 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDP--RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK--DYELWKRLAD 215 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc--cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC--ChHHHHHHHH
Confidence 3334444445555777777777777776543 34566777777777777777777766666555544 5567777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhh----HHHHHHHHHHcC
Q 038852 220 GFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVV----NATFMEWWFNQG 295 (851)
Q Consensus 220 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~----~~~li~~~~~~g 295 (851)
.....|+++.|.-+|.+++..... +...+..-+..|-+.|+...|.+.|.++.......|..- ...++..|...+
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 777777777777777777776544 555555666777777777777777777776655323222 223344455566
Q ss_pred CHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCC----------------------
Q 038852 296 KDKEAMQSYKSLMERN-FRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQ---------------------- 352 (851)
Q Consensus 296 ~~~~A~~l~~~~~~~~-~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~---------------------- 352 (851)
+-+.|++.++...... -..+...++.++..|.+...++.|......+......+|..
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL 374 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence 6677777776666522 22344556667777777777777777766666522222110
Q ss_pred ccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 038852 353 AVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTT 432 (851)
Q Consensus 353 ~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~ 432 (851)
..+..+ ..+..++.+.+..+....+........ ....-+...|..+.++|...|++++|+++|..+......-+..+
T Consensus 375 s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n--~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v 451 (895)
T KOG2076|consen 375 SYDLRV-IRLMICLVHLKERELLEALLHFLVEDN--VWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV 451 (895)
T ss_pred Cccchh-HhHhhhhhcccccchHHHHHHHHHHhc--CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh
Confidence 011111 122222223332222222222222211 11222455566666666666666666666666665444444556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCC--------CCCCHHHHH
Q 038852 433 FRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKD--------PKPDFLIYD 504 (851)
Q Consensus 433 ~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~--------~~pd~~~~~ 504 (851)
|..++.+|...|.+++|+..|++++...+.... .-..|...|...|+.++|++.++.+..-+ ..++.....
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D-~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~ 530 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLILAPDNLD-ARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILA 530 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchh-hhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHH
Confidence 666666666666666666666666655432222 22235556666666666666666644221 122233333
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 038852 505 VVVRGLCNEGLFDMSKDIVDQMM 527 (851)
Q Consensus 505 ~ll~a~~~~g~~~~A~~~~~~m~ 527 (851)
.....+...|+.++-+++...|+
T Consensus 531 ~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 531 HRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444455555555444444444
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.80 E-value=2.1e-14 Score=154.92 Aligned_cols=402 Identities=10% Similarity=0.029 Sum_probs=319.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH---cCCCCCCH----------
Q 038852 109 NRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFD---QADIVPNI---------- 175 (851)
Q Consensus 109 ~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~---~~~~~pd~---------- 175 (851)
.+..+|.+..-|+.|..++.++.. .++.+..+|..-...--.+|+.+...+++++.+. .+|+..+.
T Consensus 411 dLwlAlarLetYenAkkvLNkaRe-~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 411 DLWLALARLETYENAKKVLNKARE-IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 455677788889999999988764 4577888887777766788988888888877643 23333332
Q ss_pred ---------------------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 038852 176 ---------------------------VSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIG 228 (851)
Q Consensus 176 ---------------------------~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~ 228 (851)
.+|+.-...|.+.+.++-|+.+|..++...+. +...|..++..-...|..+
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~--k~slWlra~~~ek~hgt~E 567 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPC--KKSLWLRAAMFEKSHGTRE 567 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHhcCcHH
Confidence 23444455566666777778888888777655 6667777777777788888
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038852 229 EAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLM 308 (851)
Q Consensus 229 ~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~ 308 (851)
+-..+|.+++..-.+ ....|...+..+...||+..|+.++..+.+.+.. +..+|...+.....+..+++|..+|.+..
T Consensus 568 sl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar 645 (913)
T KOG0495|consen 568 SLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKAR 645 (913)
T ss_pred HHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence 888888888887544 6677888888888999999999999999988777 78899999999999999999999999888
Q ss_pred HhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCC
Q 038852 309 ERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKS 388 (851)
Q Consensus 309 ~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~ 388 (851)
... ++..+|..-+......++.++|++++++.++. -|+ -...|..++..+...++++.|.+.|..-....+.
T Consensus 646 ~~s--gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~----f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~ 717 (913)
T KOG0495|consen 646 SIS--GTERVWMKSANLERYLDNVEEALRLLEEALKS--FPD----FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPN 717 (913)
T ss_pred ccC--CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCc----hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCC
Confidence 754 45677777777777889999999999999985 333 4678999999999999999999999887655444
Q ss_pred CCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc-----
Q 038852 389 KPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRV----- 463 (851)
Q Consensus 389 ~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~----- 463 (851)
.+-.|..|.+.-.+.|.+-.|..+|++...++.+ |...|...|.+-.+.|+.+.|..++.+++......
T Consensus 718 -----~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWa 791 (913)
T KOG0495|consen 718 -----SIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWA 791 (913)
T ss_pred -----CchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHH
Confidence 6777988888888899999999999999877544 78899999999999999999999999998754332
Q ss_pred ------------------------chhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 038852 464 ------------------------VVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMS 519 (851)
Q Consensus 464 ------------------------~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A 519 (851)
+......+...|....++++|.+.|++.++.+.. +..+|..+...+...|.-+.-
T Consensus 792 EaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~ 870 (913)
T KOG0495|consen 792 EAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQ 870 (913)
T ss_pred HHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHH
Confidence 2223334555666677899999999999988655 667888899999999999999
Q ss_pred HHHHHHHHHcC
Q 038852 520 KDIVDQMMKYG 530 (851)
Q Consensus 520 ~~~~~~m~~~g 530 (851)
.+++++.....
T Consensus 871 kev~~~c~~~E 881 (913)
T KOG0495|consen 871 KEVLKKCETAE 881 (913)
T ss_pred HHHHHHHhccC
Confidence 99999988654
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=1.3e-14 Score=151.14 Aligned_cols=432 Identities=11% Similarity=0.058 Sum_probs=332.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHHcCChHHH
Q 038852 116 RAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNI-VSYNNLINTYCDEGKVDEG 194 (851)
Q Consensus 116 ~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~-~~~~~Li~~~~~~g~~~~A 194 (851)
..+++..|..+|++++..+ ..+...|...+.+-.+++.+..|..++++++... |-+ ..|...+.+--..|++..|
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l---PRVdqlWyKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL---PRVDQLWYKYIYMEEMLGNIAGA 160 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc---chHHHHHHHHHHHHHHhcccHHH
Confidence 4567888999999999766 5578889999999999999999999999997642 333 3566667667788999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038852 195 MNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQ 274 (851)
Q Consensus 195 ~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~ 274 (851)
..+|++-++ ..|+..+|++.|+.-.+-+.++.|..+|++.+-. .|++.+|...+..-.+.|++..|..+|+.+++
T Consensus 161 RqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie 235 (677)
T KOG1915|consen 161 RQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIE 235 (677)
T ss_pred HHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 999999987 5789999999999999999999999999999865 47999999999999999999999999998876
Q ss_pred cC--CccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhCCCHHHHHH--------HHHHHH
Q 038852 275 RC--LVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMT-PATCNTLLEVLLKHEKKEEAQA--------LFEQML 343 (851)
Q Consensus 275 ~~--~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~-~~~~~~Li~~~~~~g~~~~A~~--------l~~~m~ 343 (851)
.- -..+..++..++..-.++..++.|.-+|+-+++.-++.. ...|..+...--+.|+.....+ -|+.++
T Consensus 236 ~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v 315 (677)
T KOG1915|consen 236 FLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV 315 (677)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH
Confidence 42 112455666677777778899999999999988754432 2344444444444566443332 244555
Q ss_pred HcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHH--------HHhcCCHHHHH
Q 038852 344 DNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIAR--------YCENEMLEEAE 415 (851)
Q Consensus 344 ~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~--------~~~~g~~~~A~ 415 (851)
..+.. |.++|...+......|+.+...++|++++...+... .-..|...|-. -....|.+.+.
T Consensus 316 ~~np~------nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~---ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 316 SKNPY------NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPAS---EKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred HhCCC------CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchh---HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 54332 788999999999999999999999999876433211 22223222211 13478999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHH----HHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038852 416 KLLREISTKSLSPDVTTFRTL----IDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKM 491 (851)
Q Consensus 416 ~l~~~m~~~g~~pd~~~~~~L----l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m 491 (851)
++|...++. ++...+||..+ +....+..++..|.+++..++... |-..++...+..-...+.+|.+..+|++.
T Consensus 387 ~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~c--PK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 387 QVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKC--PKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccC--CchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999874 44445555444 444457889999999999887654 45555556667777889999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCC
Q 038852 492 GEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYG-VGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAAPV 569 (851)
Q Consensus 492 ~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~~~~~p 569 (851)
++-+.. |..+|......-...|+.+.|..+|+.++... +.....++...++.-...|.+++|..+++.+........
T Consensus 464 le~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 464 LEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred HhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch
Confidence 998766 88899999988899999999999999998643 334555667788888999999999999999987665433
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=3.1e-15 Score=156.71 Aligned_cols=398 Identities=11% Similarity=0.066 Sum_probs=272.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038852 141 TCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN-IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTK 219 (851)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd-~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~ 219 (851)
.+...++-|++.|+|++|+++|.++++. .|| .+.|..+..+|...|+|++.++...++++.+|. -+.++.....
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~--Y~KAl~RRA~ 191 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD--YVKALLRRAS 191 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH--HHHHHHHHHH
Confidence 3455677889999999999999999874 466 788999999999999999999999999997765 5667888888
Q ss_pred HHHHcCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CccchhhHHH----------
Q 038852 220 GFVDAGRIGEAVDLLRDMLS-RQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRC--LVYDGVVNAT---------- 286 (851)
Q Consensus 220 ~~~~~g~~~~A~~l~~~m~~-~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~--~~~d~~~~~~---------- 286 (851)
++-..|++++|+.-+.-..- .|+. |..+--.+=+.+-+.+ ..++.+.|+ +.+ +.|.......
T Consensus 192 A~E~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk~a-~~ka~e~~k---~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKKQA-MKKAKEKLK---ENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred HHHhhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHHHH-HHHHHHhhc---ccCCCCCCcHHHHHHHHhhcccccc
Confidence 88899999988754433222 2222 2221111111111111 122222222 011 1111111111
Q ss_pred -------------HHHH----HHH-cCCHHHHHHHHHHHHHhc---CC---CC------HHHHHHHHHHHHhCCCHHHHH
Q 038852 287 -------------FMEW----WFN-QGKDKEAMQSYKSLMERN---FR---MT------PATCNTLLEVLLKHEKKEEAQ 336 (851)
Q Consensus 287 -------------li~~----~~~-~g~~~~A~~l~~~~~~~~---~~---~~------~~~~~~Li~~~~~~g~~~~A~ 336 (851)
+... +.. ...+.+|...+.+-.... .. .| ..+.+..+..+.-.|+...|.
T Consensus 267 ~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~ 346 (606)
T KOG0547|consen 267 PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQ 346 (606)
T ss_pred ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhh
Confidence 1111 111 113444444443322110 01 11 122233333445678999999
Q ss_pred HHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHH
Q 038852 337 ALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEK 416 (851)
Q Consensus 337 ~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~ 416 (851)
..|+.++.....+ ...|..++.+|....+-++....|.++...++. +..+|..-..++.-.+++++|..
T Consensus 347 ~d~~~~I~l~~~~------~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-----n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 347 EDFDAAIKLDPAF------NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-----NPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhHHHHHhcCccc------chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-----CCchhHhHHHHHHHHHHHHHHHH
Confidence 9999999865543 445999999999999999999999999888777 66668788888888999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 038852 417 LLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDP 496 (851)
Q Consensus 417 l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~ 496 (851)
-|++.++.... ++..|.-+..+..+.+.++++...|++++++- ......|+....++...+++++|++.|++.++...
T Consensus 416 DF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF-P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 416 DFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKF-PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99999976322 56778888888889999999999999999874 44567778889999999999999999999987633
Q ss_pred C-----CCHHHHH--HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038852 497 K-----PDFLIYD--VVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRW 563 (851)
Q Consensus 497 ~-----pd~~~~~--~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~ 563 (851)
+ .+...+. .++. +--.+++..|+++++++++.+. .....+..|+.+....|+.++|+++|++...
T Consensus 494 ~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dp-kce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDP-KCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCc-hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 1222221 1221 1234899999999999998652 2344566799999999999999999998643
No 37
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.75 E-value=8e-14 Score=150.43 Aligned_cols=499 Identities=12% Similarity=0.133 Sum_probs=319.0
Q ss_pred hHHHHHhhccCcccccccchHHHHHHhhcCCCCCCCCCCccccccccCCCHHHHHHHHHHhhccccCCCCCccCCCCCCC
Q 038852 3 LLRLLLRSSNRHHHRLSFSLLHQFHNLALNPNSPNPNLNPISARGYAFSSAEEAAAERRRRKRRLRIEPPLHAIRPNPTQ 82 (851)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (851)
.+.+|+..+.++++|..|. ++|..-|-+-+..+|+..++...-.+.|.-+++.+||-.....
T Consensus 108 Ylq~l~~Q~~iT~tR~tfd-----rALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P------------- 169 (835)
T KOG2047|consen 108 YLQFLIKQGLITRTRRTFD-----RALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAP------------- 169 (835)
T ss_pred HHHHHHhcchHHHHHHHHH-----HHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCH-------------
Confidence 3567788888888887765 5555567777888999998888888888888888876655421
Q ss_pred CCCCCCCCCCCCCccccccCCCccHHHHHHHHHHcCCHHHHHHHHHHHHHc-----------------------------
Q 038852 83 PPPRDPNAPRLPDTTSALVGPRLNLHNRVQSLIRAGDLDAASYLARQAVFS----------------------------- 133 (851)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~----------------------------- 133 (851)
.....-|..|++.+++++|.+.+..++..
T Consensus 170 ----------------------~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~ 227 (835)
T KOG2047|consen 170 ----------------------EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKV 227 (835)
T ss_pred ----------------------HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchh
Confidence 01233445555555555555544443321
Q ss_pred -----------CC--CCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC---------
Q 038852 134 -----------RI--RPT--VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEG--------- 189 (851)
Q Consensus 134 -----------~~--~~~--~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g--------- 189 (851)
|+ -+| ...|+.|.+.|.+.|++++|..+|++.+..- -.+.-|..+.++|+...
T Consensus 228 ~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v---~tvrDFt~ifd~Ya~FEE~~~~~~me 304 (835)
T KOG2047|consen 228 QSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV---MTVRDFTQIFDAYAQFEESCVAAKME 304 (835)
T ss_pred cccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh---eehhhHHHHHHHHHHHHHHHHHHHHh
Confidence 11 112 3467777777777777777777777776532 23334555555554311
Q ss_pred -------------ChHHHHHHHHHHHHhCCCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--
Q 038852 190 -------------KVDEGMNVFRRIIETAPVG----------PSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGA-- 244 (851)
Q Consensus 190 -------------~~~~A~~l~~~~~~~~~~~----------p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p-- 244 (851)
+++-.+.-|+.+++..+.- -++..|...+.. ..|+..+-+..|.++++. +.|
T Consensus 305 ~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~k 381 (835)
T KOG2047|consen 305 LADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKK 381 (835)
T ss_pred hhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCccc
Confidence 1222233344433332211 123333333322 246677777888887764 222
Q ss_pred ----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccc---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----
Q 038852 245 ----DSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYD---GVVNATFMEWWFNQGKDKEAMQSYKSLMERNFR---- 313 (851)
Q Consensus 245 ----d~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d---~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~---- 313 (851)
-...|..+++.|...|+++.|+.+|++..+.....- ..+|...+++-.+..+++.|+++++++...--.
T Consensus 382 a~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~ 461 (835)
T KOG2047|consen 382 AVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELE 461 (835)
T ss_pred CCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhh
Confidence 235788899999999999999999999887654422 456777777777888899999988876532111
Q ss_pred -------------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHH
Q 038852 314 -------------MTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFK 380 (851)
Q Consensus 314 -------------~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~ 380 (851)
-+..+|..+++.....|-++....+|+++++..+. ++....+.+..+....-++++.++|+
T Consensus 462 ~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria------TPqii~NyAmfLEeh~yfeesFk~YE 535 (835)
T KOG2047|consen 462 YYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA------TPQIIINYAMFLEEHKYFEESFKAYE 535 (835)
T ss_pred hhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC------CHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 13356777777777788999999999999986655 56677777778888888999999999
Q ss_pred HhccCCCCCCCccCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHH
Q 038852 381 KAGTHPKSKPFAMDVAGYNNIIARYCE---NEMLEEAEKLLREISTKSLSPDVT--TFRTLIDAYLKVERIDDALELFNR 455 (851)
Q Consensus 381 ~~~~~~~~~~~~~d~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~--~~~~Ll~~~~~~g~~~~A~~~~~~ 455 (851)
+-+...+-. .-...|+..+.-+.+ ...++.|.++|+..++ ++.|... .|......-.+.|....|+++|++
T Consensus 536 rgI~LFk~p---~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyer 611 (835)
T KOG2047|consen 536 RGISLFKWP---NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYER 611 (835)
T ss_pred cCCccCCCc---cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 875543321 134567777766655 3468999999999998 5665532 222222333456888899999999
Q ss_pred HHHcCC-ccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHH-cC
Q 038852 456 MVESGL-RVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLI---YDVVVRGLCNEGLFDMSKDIVDQMMK-YG 530 (851)
Q Consensus 456 m~~~~~-~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~---~~~ll~a~~~~g~~~~A~~~~~~m~~-~g 530 (851)
+...-. .....+|++.+.--...=-.....++|+++++. -||... ...+...-++.|..+.|..+|....+ .+
T Consensus 612 at~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~d 689 (835)
T KOG2047|consen 612 ATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICD 689 (835)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCC
Confidence 775421 112334444333222222234445667777665 334433 22344455778999999999988765 34
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 531 VGITPALQDFVRETFGKAGRGEEIERVLN 559 (851)
Q Consensus 531 ~~~~~~~~~~L~~~~~~~G~~~eA~~ll~ 559 (851)
...+.+.+...-+.-.+.|+.+...++++
T Consensus 690 Pr~~~~fW~twk~FEvrHGnedT~keMLR 718 (835)
T KOG2047|consen 690 PRVTTEFWDTWKEFEVRHGNEDTYKEMLR 718 (835)
T ss_pred CcCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 56678889999999999999666666554
No 38
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.6e-13 Score=143.25 Aligned_cols=407 Identities=11% Similarity=0.118 Sum_probs=312.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 038852 108 HNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCD 187 (851)
Q Consensus 108 ~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~ 187 (851)
..-+..-.++..+..|.-++++++..-++.| ..|...+.+--..|++..|..+|++.++ ..|+..+|++.|+.-.+
T Consensus 111 lkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRqiferW~~---w~P~eqaW~sfI~fElR 186 (677)
T KOG1915|consen 111 LKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQIFERWME---WEPDEQAWLSFIKFELR 186 (677)
T ss_pred HHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHHHHHHHHc---CCCcHHHHHHHHHHHHH
Confidence 3456666788899999999999987654433 4566667677789999999999999865 56899999999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHH
Q 038852 188 EGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG--ADSLVYNNLISGFLNLGNLEKA 265 (851)
Q Consensus 188 ~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~--pd~~~~~~Li~~~~~~g~~~~A 265 (851)
-..++.|..+|++..- +.|++.+|...++.-.+.|.+..|..+|+.+++.--. -+...+++.+..-.+...++.|
T Consensus 187 ykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERa 263 (677)
T KOG1915|consen 187 YKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERA 263 (677)
T ss_pred hhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999875 5689999999999999999999999999999875211 1224555555555677889999
Q ss_pred HHHHHHHHhcCCccc-hhhHHHHHHHHHHcCCHHHHHHH--------HHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHH
Q 038852 266 NELFDELKQRCLVYD-GVVNATFMEWWFNQGKDKEAMQS--------YKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQ 336 (851)
Q Consensus 266 ~~~~~~~~~~~~~~d-~~~~~~li~~~~~~g~~~~A~~l--------~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~ 336 (851)
.-+|+-+++.-.... ..+|..+...-.+.|+.....+. |+.+++.+. .|-.+|-..+......|+.+...
T Consensus 264 r~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ir 342 (677)
T KOG1915|consen 264 RFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIR 342 (677)
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHH
Confidence 999999887644422 45666666666667775544433 445555543 46678888999989999999999
Q ss_pred HHHHHHHHcCCCCCCCccCHHHHHH-----HHH---HHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhc
Q 038852 337 ALFEQMLDNHQPPNIQAVNSDTFNI-----MVN---ECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCEN 408 (851)
Q Consensus 337 ~l~~~m~~~~~~p~~~~~~~~~~~~-----L~~---~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~ 408 (851)
++|++++.+ +.|-. ....|.. +-. .-....+++.+.++|..+++..+.+.+.. ...|...+....+.
T Consensus 343 e~yErAIan-vpp~~---ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtF-aKiWlmyA~feIRq 417 (677)
T KOG1915|consen 343 ETYERAIAN-VPPAS---EKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTF-AKIWLMYAQFEIRQ 417 (677)
T ss_pred HHHHHHHcc-CCchh---HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchH-HHHHHHHHHHHHHH
Confidence 999999975 44421 1112211 111 22357899999999999988766654432 33455555556678
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHH
Q 038852 409 EMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPIL 488 (851)
Q Consensus 409 g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll 488 (851)
.++..|.+++..++ |..|...+|...|..-.+.+++|.+.++|++.++.++.....|.. .+..-...|+.+.|..+|
T Consensus 418 ~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~k-yaElE~~LgdtdRaRaif 494 (677)
T KOG1915|consen 418 LNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSK-YAELETSLGDTDRARAIF 494 (677)
T ss_pred cccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHH-HHHHHHHhhhHHHHHHHH
Confidence 99999999999988 667899999999999999999999999999999988766655543 666667789999999999
Q ss_pred HHHhhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038852 489 TKMGEKD-PKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYG 530 (851)
Q Consensus 489 ~~m~~~~-~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g 530 (851)
+-++... +.--...|...|+--...|.+++|..+|+++++..
T Consensus 495 elAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 495 ELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 9998763 33345677777777788999999999999999754
No 39
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=2.9e-15 Score=150.65 Aligned_cols=438 Identities=11% Similarity=0.038 Sum_probs=286.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC
Q 038852 111 VQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGK 190 (851)
Q Consensus 111 l~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~ 190 (851)
+..++...|+..|+.+++-....+.+....+-..+..++.+.|+|++|+..|+.+..++ .++...+..|+.++.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHH
Confidence 56788899999999999887655433333445567788889999999999999987643 3677888889988899999
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 191 VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFD 270 (851)
Q Consensus 191 ~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~ 270 (851)
+.+|..+.+++.+ +...-..|.....+.++-++-..+...+.+. ..--.+|+......-.+.+|+++|+
T Consensus 107 Y~eA~~~~~ka~k------~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYk 175 (557)
T KOG3785|consen 107 YIEAKSIAEKAPK------TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYK 175 (557)
T ss_pred HHHHHHHHhhCCC------ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 9999988776532 3334555666666777777666665555432 1223345555555667888888888
Q ss_pred HHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC--CC-----------------
Q 038852 271 ELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKH--EK----------------- 331 (851)
Q Consensus 271 ~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~--g~----------------- 331 (851)
+++..+.. -..+...+..+|.+..-++-+.++++..+..-. .+....|..+....+. |+
T Consensus 176 rvL~dn~e-y~alNVy~ALCyyKlDYydvsqevl~vYL~q~p-dStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~ 253 (557)
T KOG3785|consen 176 RVLQDNPE-YIALNVYMALCYYKLDYYDVSQEVLKVYLRQFP-DSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY 253 (557)
T ss_pred HHHhcChh-hhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCC-CcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc
Confidence 88765443 122333445567777777777777776665432 2223333333222221 11
Q ss_pred ----------------HHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCH
Q 038852 332 ----------------KEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDV 395 (851)
Q Consensus 332 ----------------~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~ 395 (851)
-+.|+.++-.+++ .-+++...|+..|.+.+++.+|..+.+++.- . .|..
T Consensus 254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~---------~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P---t---tP~E 318 (557)
T KOG3785|consen 254 PFIEYLCRHNLVVFRNGEGALQVLPSLMK---------HIPEARLNLIIYYLNQNDVQEAISLCKDLDP---T---TPYE 318 (557)
T ss_pred hhHHHHHHcCeEEEeCCccHHHhchHHHh---------hChHhhhhheeeecccccHHHHHHHHhhcCC---C---ChHH
Confidence 1222222222222 1345667788889999999999999987732 2 1222
Q ss_pred HHHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhH
Q 038852 396 AGYNNIIARYCENE-------MLEEAEKLLREISTKSLSPDVT-TFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSF 467 (851)
Q Consensus 396 ~~~~~li~~~~~~g-------~~~~A~~l~~~m~~~g~~pd~~-~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 467 (851)
|..-...++..| .+.-|...|.-+-+.+..-|.. ---++..++.-...+|+.+.+++.+...-..++...
T Consensus 319 --yilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn 396 (557)
T KOG3785|consen 319 --YILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN 396 (557)
T ss_pred --HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 222222233333 3555666666554444443422 234566677777889999999988877655556666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038852 468 GTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYD-VVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFG 546 (851)
Q Consensus 468 ~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~-~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~ 546 (851)
++ +..+++..|++.+|.++|-++....++ |..+|. .|.++|.+.+..+.|++++-++... .........++..+.
T Consensus 397 ~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~--~e~fsLLqlIAn~CY 472 (557)
T KOG3785|consen 397 LN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTP--SERFSLLQLIANDCY 472 (557)
T ss_pred hH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc--hhHHHHHHHHHHHHH
Confidence 65 889999999999999999998877777 555554 5667889999999998877554321 122334455788899
Q ss_pred hcCCHHHHHHHHHhhhhcCCCCCCCCCCCCCCCCCCcc
Q 038852 547 KAGRGEEIERVLNADRWGYAAPVPPPRTSGPPQMTGQQ 584 (851)
Q Consensus 547 ~~G~~~eA~~ll~~~~~~~~~~p~~~~~~~~~~~~~~~ 584 (851)
+++.+--|.+.|+++....|.+..|.-..|+|......
T Consensus 473 k~~eFyyaaKAFd~lE~lDP~pEnWeGKRGACaG~f~~ 510 (557)
T KOG3785|consen 473 KANEFYYAAKAFDELEILDPTPENWEGKRGACAGLFRQ 510 (557)
T ss_pred HHHHHHHHHHhhhHHHccCCCccccCCccchHHHHHHH
Confidence 99999999999999877666555544466666554443
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=6.8e-16 Score=168.39 Aligned_cols=287 Identities=15% Similarity=0.185 Sum_probs=230.7
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--ccchhhHHHHHHHHHHcCCHHHHHHH
Q 038852 226 RIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCL--VYDGVVNATFMEWWFNQGKDKEAMQS 303 (851)
Q Consensus 226 ~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~--~~d~~~~~~li~~~~~~g~~~~A~~l 303 (851)
+..+|+.+|.++...... ...+...++++|.+.+++++|+++|+.+.+... .-+..+|.+.+--+- +.-+--.+
T Consensus 334 ~~~~A~~~~~klp~h~~n-t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYN-TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---DEVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---hhHHHHHH
Confidence 568999999995555333 557788899999999999999999999987642 235667776654332 22222222
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 038852 304 YKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAG 383 (851)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~ 383 (851)
-+++++.+ +..+.+|.+++++|.-.++.+.|++.|++++.. .|+ ...+|+.++.-+....++|.|...|+.++
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~----faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPR----FAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCc----cchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 23333333 345689999999999999999999999999984 443 57899999999999999999999999998
Q ss_pred cCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Q 038852 384 THPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRV 463 (851)
Q Consensus 384 ~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~ 463 (851)
...+. +..+|..|+..|.+.++++.|+-.|.++++.+.. +.+....++..+.+.|+.|+|+.+|+++...+.+.
T Consensus 483 ~~~~r-----hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn 556 (638)
T KOG1126|consen 483 GVDPR-----HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN 556 (638)
T ss_pred cCCch-----hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC
Confidence 77665 7778888999999999999999999999976433 67778889999999999999999999999998888
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038852 464 VVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGV 531 (851)
Q Consensus 464 ~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~ 531 (851)
....|. .+..+...+++++|+..|+++++.-.. +...|..+.+.|.+.|+.+.|+.-|..+.+.+.
T Consensus 557 ~l~~~~-~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 557 PLCKYH-RASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred chhHHH-HHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 777776 668888999999999999999886333 566788888999999999999999998887653
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=3.1e-14 Score=148.57 Aligned_cols=311 Identities=12% Similarity=0.102 Sum_probs=233.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhc
Q 038852 182 INTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG--ADSLVYNNLISGFLNL 259 (851)
Q Consensus 182 i~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~--pd~~~~~~Li~~~~~~ 259 (851)
..++-.....++++.-.+.....+ +.-+...-+..+.+.....|++.|+.+|+++++.++- -|..+|..++.+-...
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~g-f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVG-FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 344555556677777666665543 4334444555666677889999999999999987521 1667787776554332
Q ss_pred CCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 038852 260 GNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALF 339 (851)
Q Consensus 260 g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~ 339 (851)
..+ .++..-.-.--+....+...+++.|.-.++.++|+.+|+++++.+.+. ..+|+.|+.-|...++...|++.|
T Consensus 313 skL----s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~-~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 313 SKL----SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKY-LSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HHH----HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcch-hHHHHHhhHHHHHhcccHHHHHHH
Confidence 222 222221111122356678888899999999999999999999998654 478999999999999999999999
Q ss_pred HHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 340 EQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLR 419 (851)
Q Consensus 340 ~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~ 419 (851)
+++++.+ |. |-.+|..|+.+|.-.+...-|+-+|+++....+. |...|.+|+.+|.+.++.++|++.|.
T Consensus 388 RrAvdi~--p~----DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-----DsRlw~aLG~CY~kl~~~~eAiKCyk 456 (559)
T KOG1155|consen 388 RRAVDIN--PR----DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-----DSRLWVALGECYEKLNRLEEAIKCYK 456 (559)
T ss_pred HHHHhcC--ch----hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-----chHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999854 33 8899999999999999999999999999887666 99999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCccc--hhHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 038852 420 EISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVES----GLRVV--VSFGTKVFNELITKGKVAECAPILTKMGE 493 (851)
Q Consensus 420 ~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~----~~~~~--~~~~~~L~~~~~~~g~~~~A~~ll~~m~~ 493 (851)
+....|-. +...+..|+..|-+.++.++|..+|++.++. |...+ ......|...+.+.+++++|..+......
T Consensus 457 rai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 457 RAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 99987533 6688999999999999999999999998863 22222 22223356667788888888765544433
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038852 494 KDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMK 528 (851)
Q Consensus 494 ~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~ 528 (851)
. .-..++|..+++++.+
T Consensus 536 ~------------------~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 536 G------------------ETECEEAKALLREIRK 552 (559)
T ss_pred C------------------CchHHHHHHHHHHHHH
Confidence 2 3345777778777765
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=1.2e-15 Score=166.37 Aligned_cols=292 Identities=16% Similarity=0.109 Sum_probs=223.2
Q ss_pred CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 038852 153 KRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGP-SSNTYRHLTKGFVDAGRIGEAV 231 (851)
Q Consensus 153 g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p-~~~~~~~Li~~~~~~g~~~~A~ 231 (851)
-+..+|+.+|.++... +.-...+...++.+|.+.+++++|+++|+.+.+..+... +.++|.+.+.-+-+ +-++
T Consensus 333 y~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~L 406 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVAL 406 (638)
T ss_pred HHHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHH
Confidence 3567888888885432 222345667788888888888888888888887766543 45667666544332 1122
Q ss_pred HHH-HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 038852 232 DLL-RDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMER 310 (851)
Q Consensus 232 ~l~-~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~ 310 (851)
.++ .++++.... ...+|.+++.+|.-.++.+.|++.|++++..+.. ...+|..++.-+....++|.|...|+.++..
T Consensus 407 s~Laq~Li~~~~~-sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 407 SYLAQDLIDTDPN-SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHHhhCCC-CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 222 233333222 6688888888888888888888888888877655 6778888888888888888888888888876
Q ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCC
Q 038852 311 NFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKP 390 (851)
Q Consensus 311 ~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 390 (851)
+.+. -..|..|+..|.+.++++.|+-.|+++++. .|. +.+....++..+.+.|+.|+|+.+|+++...++.
T Consensus 485 ~~rh-YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~----nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-- 555 (638)
T KOG1126|consen 485 DPRH-YNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPS----NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-- 555 (638)
T ss_pred Cchh-hHHHHhhhhheeccchhhHHHHHHHhhhcC--Ccc----chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC--
Confidence 6532 246677889999999999999999999884 443 7888899999999999999999999999877666
Q ss_pred CccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccch
Q 038852 391 FAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVV 465 (851)
Q Consensus 391 ~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 465 (851)
|...-...+..+...+++++|+..|+++++. +.-+..++..|+..|.+.|+.+.|+.-|.-|.+.+.+...
T Consensus 556 ---n~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 556 ---NPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred ---CchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 6666667778888899999999999999875 3335778899999999999999999999999888766544
No 43
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=3e-13 Score=139.58 Aligned_cols=429 Identities=12% Similarity=0.126 Sum_probs=290.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HHcCChhHHHHHHHHHHHcCCCC-CCHHHHHHHHHHH
Q 038852 109 NRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAM--YRAKRYDDAVALFKYFFDQADIV-PNIVSYNNLINTY 185 (851)
Q Consensus 109 ~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~l~~~~~~~~~~~-pd~~~~~~Li~~~ 185 (851)
+-+..++..|++.++.-++++|...+...+..+-..|+... ....+.--| -+++++...... .+..+|
T Consensus 120 ~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~--E~~~Fv~~~~~~E~S~~sW------- 190 (625)
T KOG4422|consen 120 NNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFA--EWEEFVGMRNFGEDSTSSW------- 190 (625)
T ss_pred hHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcch--hHHHHhhcccccccccccc-------
Confidence 44566788899999999999999988777766655555433 333333322 122222221111 123334
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKA 265 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A 265 (851)
+.|++.+ -+|+.. |. +..+|..||.++++--..+.|.++|++..+...+.+..+||.+|.+-.-.. .
T Consensus 191 -K~G~vAd--L~~E~~----PK--T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~ 257 (625)
T KOG4422|consen 191 -KSGAVAD--LLFETL----PK--TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----G 257 (625)
T ss_pred -ccccHHH--HHHhhc----CC--CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----c
Confidence 2344333 333332 22 455899999999999899999999999888877888889998887654332 3
Q ss_pred HHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHH----HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHH-HHHHHH
Q 038852 266 NELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEA----MQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEE-AQALFE 340 (851)
Q Consensus 266 ~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A----~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~-A~~l~~ 340 (851)
.+++.+|....+.||..++|+++.+..+.|+++.| ++++.+|.+.|+.|...+|..+|..+++.++..+ |..++.
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 77888899888999999999999999999987764 5667788889999999999999998888877643 555555
Q ss_pred HHHH----cCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccC---HHHHHHHHHHHHhcCCHHH
Q 038852 341 QMLD----NHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMD---VAGYNNIIARYCENEMLEE 413 (851)
Q Consensus 341 ~m~~----~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d---~~~~~~li~~~~~~g~~~~ 413 (851)
++.. +.+.|- ...|...|...+..|.+..+.+.|..+-.-+........+.++ ..-|..+..+.|.....+.
T Consensus 338 dI~N~ltGK~fkp~-~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~ 416 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPI-TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDV 416 (625)
T ss_pred HHHHhhccCcccCC-CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5543 223331 1225667777788888999988888776655443322222222 3446677788888888999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcC-CH-----------
Q 038852 414 AEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKG-KV----------- 481 (851)
Q Consensus 414 A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g-~~----------- 481 (851)
-++.|+.|+-.-.-|+..+...++.+....+.++-.-++|..+++.|..........++..+++.. ..
T Consensus 417 ~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~ 496 (625)
T KOG4422|consen 417 TLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVA 496 (625)
T ss_pred HHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHH
Confidence 999999998776778888888888988889999999999999998876555555444555555543 11
Q ss_pred --HHHHHHHH-------HHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhc
Q 038852 482 --AECAPILT-------KMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVG----ITPALQDFVRETFGKA 548 (851)
Q Consensus 482 --~~A~~ll~-------~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~----~~~~~~~~L~~~~~~~ 548 (851)
+-|..+++ +|. ..+.....++.++-.+.+.|+.++|.++|..+.+.+-. +.......+++.-.+.
T Consensus 497 ~ak~aad~~e~~e~~~~R~r--~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~ 574 (625)
T KOG4422|consen 497 FAKCAADIKEAYESQPIRQR--AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVS 574 (625)
T ss_pred HHHHHHHHHHHHHhhHHHHH--hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhc
Confidence 01122222 122 23345556777777888999999999999988654322 2233333466666677
Q ss_pred CCHHHHHHHHHhhh
Q 038852 549 GRGEEIERVLNADR 562 (851)
Q Consensus 549 G~~~eA~~ll~~~~ 562 (851)
.....|..+++-+.
T Consensus 575 ~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 575 NSPSQAIEVLQLAS 588 (625)
T ss_pred CCHHHHHHHHHHHH
Confidence 77888888777664
No 44
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=9.7e-14 Score=148.57 Aligned_cols=443 Identities=12% Similarity=0.035 Sum_probs=320.0
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT 184 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~ 184 (851)
..+..+++.++...++..|+-+.+++......| .....++.+++-.|.++.|..++..- +. ...|..+...++.+
T Consensus 17 ~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp--~d~~~~aq~l~~~~~y~ra~~lit~~-~l--e~~d~~cryL~~~~ 91 (611)
T KOG1173|consen 17 EKYRRLVRDALMQHRYKTALFWADKVAGLTNDP--ADIYWLAQVLYLGRQYERAAHLITTY-KL--EKRDIACRYLAAKC 91 (611)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCh--HHHHHHHHHHHhhhHHHHHHHHHHHh-hh--hhhhHHHHHHHHHH
Confidence 456677888889999999999999988665444 44455888899999999999888764 21 23578888899999
Q ss_pred HHHcCChHHHHHHHHHH----HHh--CC------CCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 038852 185 YCDEGKVDEGMNVFRRI----IET--AP------VGPS-----------SNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQ 241 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~----~~~--~~------~~p~-----------~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g 241 (851)
+.+..++++|..++.+. ... .+ ...| ...+..-...|....++++|...|.+++..+
T Consensus 92 l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D 171 (611)
T KOG1173|consen 92 LVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLAD 171 (611)
T ss_pred HHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcc
Confidence 99999999999998822 110 00 0001 0112222345666778889999999888764
Q ss_pred CCCCHHHHHHHHHHHHh-----------------cC-CHHHHHHHHHHHHhc----------------CCccchhhHHHH
Q 038852 242 LGADSLVYNNLISGFLN-----------------LG-NLEKANELFDELKQR----------------CLVYDGVVNATF 287 (851)
Q Consensus 242 ~~pd~~~~~~Li~~~~~-----------------~g-~~~~A~~~~~~~~~~----------------~~~~d~~~~~~l 287 (851)
+. ....+..|+....- .+ +.+.-+.+|+....+ +..-+..+....
T Consensus 172 ~~-c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ 250 (611)
T KOG1173|consen 172 AK-CFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEK 250 (611)
T ss_pred hh-hHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHH
Confidence 43 22222222222111 01 111222222211000 122345566666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHH
Q 038852 288 MEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECF 367 (851)
Q Consensus 288 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~ 367 (851)
.+-+...+++++..++++.+++.++... ..+..-|.++.+.|+..+-..+-.++++.. |+ ...+|..++..|.
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~dpfh~-~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--P~----~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKDPFHL-PCLPLHIACLYELGKSNKLFLLSHKLVDLY--PS----KALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhCCCCc-chHHHHHHHHHHhcccchHHHHHHHHHHhC--CC----CCcchhhHHHHHH
Confidence 7778889999999999999999875433 455555668899999999888888888853 33 6789999999999
Q ss_pred HcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 038852 368 KHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERID 447 (851)
Q Consensus 368 ~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~ 447 (851)
..|++.+|.++|.++...++. -...|..++..|...|.-|.|+..+..+.+. +.-...-+..++.-|.+.++++
T Consensus 324 ~i~k~seARry~SKat~lD~~-----fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPT-----FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCcc-----ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHH
Confidence 999999999999999776555 4567999999999999999999999887664 2222333455677888999999
Q ss_pred HHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhC--CCC----CCHHHHHHHHHHHHhcCChHHHHH
Q 038852 448 DALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEK--DPK----PDFLIYDVVVRGLCNEGLFDMSKD 521 (851)
Q Consensus 448 ~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~--~~~----pd~~~~~~ll~a~~~~g~~~~A~~ 521 (851)
.|.++|..+....+. +....+.+..+....+.+.+|..+|+..+.. .+. .-..+++.|..+|.+.+++++|+.
T Consensus 398 LAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 999999999987644 4444455777777889999999999987732 111 123468888999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCC
Q 038852 522 IVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAAP 568 (851)
Q Consensus 522 ~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~~~~~ 568 (851)
.|++.+... +.+..++..++.+|...|+++.|++.|++....-|.+
T Consensus 477 ~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 477 YYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 999999764 5788889999999999999999999999987755543
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.69 E-value=1.6e-13 Score=153.87 Aligned_cols=292 Identities=11% Similarity=0.067 Sum_probs=174.2
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 038852 151 RAKRYDDAVALFKYFFDQADIVPN-IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGE 229 (851)
Q Consensus 151 ~~g~~~~A~~l~~~~~~~~~~~pd-~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~ 229 (851)
..|+++.|.+.+.+..+.. ++ ...+...+.++...|++++|.++|+++.+..+. .+.......+..+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~---~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~-~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA---AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGN-DNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-CchHHHHHHHHHHHHCCCHHH
Confidence 4688888888887765432 33 344455566777778888888888887665433 112234445777777888888
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHH---HHHcCCHHHHHHHHHH
Q 038852 230 AVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEW---WFNQGKDKEAMQSYKS 306 (851)
Q Consensus 230 A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~---~~~~g~~~~A~~l~~~ 306 (851)
|++.++++.+..+. +..++..++.+|...|++++|.+++..+.+.+.............+ +...+..+++.+.+..
T Consensus 172 Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 172 ARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88888888877655 6677778888888888888888888888776544222221111111 1223333333445555
Q ss_pred HHHhcCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHH--HHHHHHHHHHcCChHHHHHHHHH
Q 038852 307 LMERNFR---MTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDT--FNIMVNECFKHGKFSEAIETFKK 381 (851)
Q Consensus 307 ~~~~~~~---~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~--~~~L~~~~~~~g~~~~A~~~~~~ 381 (851)
+.+.... .+...+..++..+...|+.++|++++++.++.... +... ...........++.+.+++.+++
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd------~~~~~~~~l~~~~~l~~~~~~~~~~~~e~ 324 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGD------DRAISLPLCLPIPRLKPEDNEKLEKLIEK 324 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC------cccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence 4444332 25566666777777777777777777777764322 1111 11111222234556666666666
Q ss_pred hccCCCCCCCccCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 382 AGTHPKSKPFAMDV--AGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVE 458 (851)
Q Consensus 382 ~~~~~~~~~~~~d~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~ 458 (851)
..+..+. |. ....+++..|.+.|++++|.+.|+........||...+..++..+.+.|+.++|.++|++.+.
T Consensus 325 ~lk~~p~-----~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 325 QAKNVDD-----KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHhCCC-----ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6554444 34 555566666666677777777666433323346666666666666666777777666666543
No 46
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=5.4e-13 Score=137.71 Aligned_cols=403 Identities=16% Similarity=0.153 Sum_probs=275.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHH--HHHHcCChHHH-HHHHHHHHHhCCCCCCHHHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLIN--TYCDEGKVDEG-MNVFRRIIETAPVGPSSNTYR 215 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~--~~~~~g~~~~A-~~l~~~~~~~~~~~p~~~~~~ 215 (851)
+++=|.|+. +...|.++++.-+|+.|. ..++..+...-..|++ +|....+.--| ++.|-.|.+.+.. +..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~-~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~--S~~sW- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMR-SENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED--STSSW- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHH-hcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc--ccccc-
Confidence 344555554 456788888888998884 3444444443333332 33333332211 2233333333211 23344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcC
Q 038852 216 HLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQG 295 (851)
Q Consensus 216 ~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g 295 (851)
+.|++.+ ++-+.+ .+ +..+|.+||.++++.-..+.|.++|++..+.....+..+++.+|.+-.-.
T Consensus 191 -------K~G~vAd---L~~E~~---PK-T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~- 255 (625)
T KOG4422|consen 191 -------KSGAVAD---LLFETL---PK-TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS- 255 (625)
T ss_pred -------ccccHHH---HHHhhc---CC-CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh-
Confidence 3444433 444433 22 66799999999999999999999999999888888999999988764332
Q ss_pred CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHH----HHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCC
Q 038852 296 KDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEA----QALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGK 371 (851)
Q Consensus 296 ~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A----~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~ 371 (851)
...+++.+|.....+||..|+|+++.+..+.|+++.| ++++.+|.+.|+.| ...+|..++..+++.++
T Consensus 256 ---~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVeP-----sLsSyh~iik~f~re~d 327 (625)
T KOG4422|consen 256 ---VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEP-----SLSSYHLIIKNFKRESD 327 (625)
T ss_pred ---ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCc-----chhhHHHHHHHhcccCC
Confidence 2278899999999999999999999999999988764 56778888999999 67899999998888877
Q ss_pred hH-HHHHHHHHhccCCCCCCCc----cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHH
Q 038852 372 FS-EAIETFKKAGTHPKSKPFA----MDVAGYNNIIARYCENEMLEEAEKLLREISTKS----LSPD---VTTFRTLIDA 439 (851)
Q Consensus 372 ~~-~A~~~~~~~~~~~~~~~~~----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~pd---~~~~~~Ll~~ 439 (851)
.. .+..++.++...-..+.+. -|...|...+..|.+..+.+-|.++..-+.... +.++ .+-|..+..+
T Consensus 328 p~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~l 407 (625)
T KOG4422|consen 328 PQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDL 407 (625)
T ss_pred chhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHH
Confidence 63 4555555543332222222 255667777888889999999988877554321 2222 2345667778
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-h--
Q 038852 440 YLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGL-F-- 516 (851)
Q Consensus 440 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~-~-- 516 (851)
.+....++.-..+|+.|+-.-.-+...+...++++....|.++-.-++|..++..|...+......++..+++..- .
T Consensus 408 icq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~t 487 (625)
T KOG4422|consen 408 ICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLT 487 (625)
T ss_pred HHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCC
Confidence 8888899999999999997766677777777888999999999999999999888765555555556666555431 0
Q ss_pred -----------HHHHHHHHHHH-----HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCC
Q 038852 517 -----------DMSKDIVDQMM-----KYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAAPV 569 (851)
Q Consensus 517 -----------~~A~~~~~~m~-----~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~~~~~p 569 (851)
+-|..+++... -.....+....++++-++.|.|+.++|.++|.-+.....+.+
T Consensus 488 p~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip 556 (625)
T KOG4422|consen 488 PEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIP 556 (625)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCC
Confidence 01111211111 023446777888899999999999999999998865444433
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.67 E-value=5e-13 Score=149.74 Aligned_cols=296 Identities=13% Similarity=0.025 Sum_probs=179.9
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKA 265 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A 265 (851)
...|+++.|.+.+.+..+..+. ....+...+.++...|++++|.++|.++.+.....+..+.......+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~--~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAE--PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4578999999999888775433 34455666778888899999999999887764443333455568888889999999
Q ss_pred HHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHH-HHHHH---HHhCCCHHHHHHHHHH
Q 038852 266 NELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCN-TLLEV---LLKHEKKEEAQALFEQ 341 (851)
Q Consensus 266 ~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~-~Li~~---~~~~g~~~~A~~l~~~ 341 (851)
.+.++++.+..+. +..++..++.+|...|++++|++++..+.+.+.... ..+. ....+ +...+..+++.+.+..
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~-~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD-EEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999888766 667888888888899999999988888888765322 2221 11111 1222233333444544
Q ss_pred HHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038852 342 MLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREI 421 (851)
Q Consensus 342 m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 421 (851)
+.+.... ....+...+..++..+...|+.++|++++++..+..++.. +..............++.+.+++.+++.
T Consensus 251 ~~~~~p~--~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~---~~~~~~l~~~~~l~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 251 WWKNQPR--HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR---AISLPLCLPIPRLKPEDNEKLEKLIEKQ 325 (409)
T ss_pred HHHHCCH--HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc---cchhHHHHHhhhcCCCChHHHHHHHHHH
Confidence 4443211 0001556677777777777777777777777766444311 1100111111222345566666666665
Q ss_pred HhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038852 422 STKSLSPDV--TTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKM 491 (851)
Q Consensus 422 ~~~g~~pd~--~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m 491 (851)
.+.. +-|. ....+++..|.+.|++++|.++|+++......|+...+..+...+.+.|+.++|.++|++.
T Consensus 326 lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 326 AKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5531 1133 4455666666666666666666664333222333333445666666666666666666654
No 48
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.66 E-value=2e-12 Score=140.67 Aligned_cols=449 Identities=14% Similarity=0.122 Sum_probs=306.9
Q ss_pred CCCccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHH
Q 038852 102 GPRLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNL 181 (851)
Q Consensus 102 ~~~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~L 181 (851)
.....++..+..+...+.+...+++.+.++... .-...+....+-.+...|+-++|.+..+..++. -..+.++|..+
T Consensus 5 ~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--d~~S~vCwHv~ 81 (700)
T KOG1156|consen 5 PKENALFRRALKCYETKQYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--DLKSHVCWHVL 81 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhcc--CcccchhHHHH
Confidence 344678888889999999999999999988743 334455555555566789999999999987663 23467899999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 038852 182 INTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGN 261 (851)
Q Consensus 182 i~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~ 261 (851)
+-.+....++++|++.|..+++.++. |...|..|...-+..++++...+.-...+..... ....|..++.++.-.|+
T Consensus 82 gl~~R~dK~Y~eaiKcy~nAl~~~~d--N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~ 158 (700)
T KOG1156|consen 82 GLLQRSDKKYDEAIKCYRNALKIEKD--NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGE 158 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998766 8889999998899999999999988888887554 66789999999999999
Q ss_pred HHHHHHHHHHHHhcCC-ccchhhHHHHH------HHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHH
Q 038852 262 LEKANELFDELKQRCL-VYDGVVNATFM------EWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEE 334 (851)
Q Consensus 262 ~~~A~~~~~~~~~~~~-~~d~~~~~~li------~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~ 334 (851)
+..|..++++..+... .++...+.... ....+.|..++|++.+.+....-+ .....-......+.+.+++++
T Consensus 159 y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~-Dkla~~e~ka~l~~kl~~lEe 237 (700)
T KOG1156|consen 159 YKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIV-DKLAFEETKADLLMKLGQLEE 237 (700)
T ss_pred HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHH-HHHHHhhhHHHHHHHHhhHHh
Confidence 9999999999887652 34444444332 335567788888877765443311 111233445677889999999
Q ss_pred HHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHH-HHHHHhccCCCCCCCc----cC---HHHHHHHHHHHH
Q 038852 335 AQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAI-ETFKKAGTHPKSKPFA----MD---VAGYNNIIARYC 406 (851)
Q Consensus 335 A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~----~d---~~~~~~li~~~~ 406 (851)
|..+|..++..+ || +...|..+..++.+..+.-+++ .+|....+..+..... .+ ..-+...++-|.
T Consensus 238 A~~~y~~Ll~rn--Pd----n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL 311 (700)
T KOG1156|consen 238 AVKVYRRLLERN--PD----NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYL 311 (700)
T ss_pred HHHHHHHHHhhC--ch----hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHH
Confidence 999999999854 43 5555555555664444444444 6666554333221100 00 011111111111
Q ss_pred ----hcC-------------CHHHHHHHHHHHHh--------CC----------CCCCHHHH--HHHHHHHHHcCCHHHH
Q 038852 407 ----ENE-------------MLEEAEKLLREIST--------KS----------LSPDVTTF--RTLIDAYLKVERIDDA 449 (851)
Q Consensus 407 ----~~g-------------~~~~A~~l~~~m~~--------~g----------~~pd~~~~--~~Ll~~~~~~g~~~~A 449 (851)
+.| +.+.+ .++++++. .| -.|....| ..++..|-+.|+++.|
T Consensus 312 ~~~l~Kg~p~vf~dl~SLyk~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A 390 (700)
T KOG1156|consen 312 RPLLSKGVPSVFKDLRSLYKDPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVA 390 (700)
T ss_pred HHHhhcCCCchhhhhHHHHhchhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHH
Confidence 111 11111 12222211 11 13344433 5577788899999999
Q ss_pred HHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038852 450 LELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKY 529 (851)
Q Consensus 450 ~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~ 529 (851)
..+++.+++..+ .-+..|..-.+++..+|++++|..++++..+.+. +|...=.-.+.-..++++.++|.++.....+.
T Consensus 391 ~~yId~AIdHTP-TliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~ 468 (700)
T KOG1156|consen 391 LEYIDLAIDHTP-TLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTRE 468 (700)
T ss_pred HHHHHHHhccCc-hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhc
Confidence 999999998753 2344455566889999999999999999988753 25444445566667889999999999999887
Q ss_pred CCCCCH--HHHHH------HHHHHHhcCCHHHHHHHHHhhhhcCC
Q 038852 530 GVGITP--ALQDF------VRETFGKAGRGEEIERVLNADRWGYA 566 (851)
Q Consensus 530 g~~~~~--~~~~~------L~~~~~~~G~~~eA~~ll~~~~~~~~ 566 (851)
|...-. ....+ -+++|.+.|++.+|++-|..+..-|.
T Consensus 469 ~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~ 513 (700)
T KOG1156|consen 469 GFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYK 513 (700)
T ss_pred ccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 752111 11111 36788899999999888887766554
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.66 E-value=3.2e-16 Score=166.80 Aligned_cols=260 Identities=17% Similarity=0.220 Sum_probs=76.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCC
Q 038852 218 TKGFVDAGRIGEAVDLLRDMLSRQ-LGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGK 296 (851)
Q Consensus 218 i~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~ 296 (851)
+..+.+.|++++|++++++..... ..-|...|..++..+...++++.|++.|+++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 444445555555555553332222 1123344444444445555555555555555444332 33333334433 34455
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHH
Q 038852 297 DKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAI 376 (851)
Q Consensus 297 ~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~ 376 (851)
+++|++++++..+.. .+...+..++..+...++++++.++++.+......++ +...|..++.++.+.|+.++|+
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPD----SARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-----HHHHHHHHHHHHHCCHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCC----CHHHHHHHHHHHHHcCCHHHHH
Confidence 555555544443332 1223444555556666666666666666554221111 4555666666666666666666
Q ss_pred HHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038852 377 ETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRM 456 (851)
Q Consensus 377 ~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m 456 (851)
++|+++....+. |....+.++..+...|+.+++.++++...+.. ..|...|..++.+|...|+.++|+.+|+++
T Consensus 167 ~~~~~al~~~P~-----~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 167 RDYRKALELDPD-----DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp HHHHHHHHH-TT------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCC-----CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccc
Confidence 666666555444 55556666666666666666666665555432 234445566666666666666666666666
Q ss_pred HHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 038852 457 VESGLRVVVSFGTKVFNELITKGKVAECAPILTKMG 492 (851)
Q Consensus 457 ~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~ 492 (851)
.+.+. .+..+...++.++...|+.++|.++++++.
T Consensus 241 ~~~~p-~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 241 LKLNP-DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHST-T-HHHHHHHHHHHT----------------
T ss_pred ccccc-cccccccccccccccccccccccccccccc
Confidence 66442 233334445666666666666666655543
No 50
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.66 E-value=5.7e-13 Score=148.52 Aligned_cols=283 Identities=12% Similarity=0.090 Sum_probs=130.4
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHH
Q 038852 152 AKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSS-NTYRHLTKGFVDAGRIGEA 230 (851)
Q Consensus 152 ~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~-~~~~~Li~~~~~~g~~~~A 230 (851)
.||++.|++++....+..+ -....|.....+....|++++|.+.|.++.+..+. +. .........+...|++++|
T Consensus 97 eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~--~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAELADN--DQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHCCCHHHH
Confidence 4677766666665433211 01222333334445667777777777666654322 11 1111235566666777777
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchh-------hHHHHHHHHHHcCCHHHHHHH
Q 038852 231 VDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGV-------VNATFMEWWFNQGKDKEAMQS 303 (851)
Q Consensus 231 ~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~-------~~~~li~~~~~~g~~~~A~~l 303 (851)
++.++++.+.... +...+..++.+|.+.|++++|.+++..+.+.....+.. .|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 7777776666554 56666666667777777777777766666654432111 111111111122222223333
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 038852 304 YKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAG 383 (851)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~ 383 (851)
++.+.+. .+.+......++..+...|+.++|.+++++.++.. + +.... ++...+..++.+++++.+++..
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~-----~~~l~--~l~~~l~~~~~~~al~~~e~~l 321 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--Y-----DERLV--LLIPRLKTNNPEQLEKVLRQQI 321 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--C-----CHHHH--HHHhhccCCChHHHHHHHHHHH
Confidence 3322211 11233344444444445555555555554444421 1 11111 1111122344444444444444
Q ss_pred cCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038852 384 THPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRM 456 (851)
Q Consensus 384 ~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m 456 (851)
+..++ |...+.++...|.+.+++++|.+.|+.+.+. .|+..++..|..++.+.|+.++|.++|++.
T Consensus 322 k~~P~-----~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 322 KQHGD-----TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred hhCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 43333 4444444444444444444444444444432 344444444444444444444444444444
No 51
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.66 E-value=9.8e-12 Score=134.57 Aligned_cols=444 Identities=12% Similarity=0.124 Sum_probs=292.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRI-RPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTY 185 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~ 185 (851)
+..-+..+.+.|++..-+..|++++..-. .-...+|...+......+-.+-++.+|++.++. +...-+..|..+
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~-----~P~~~eeyie~L 179 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV-----APEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc-----CHHHHHHHHHHH
Confidence 44556778889999999999998886542 234567888888888888899999999998774 444467778888
Q ss_pred HHcCChHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038852 186 CDEGKVDEGMNVFRRIIETAP-----VGPSSNTYRHLTKGFVDAGRIG---EAVDLLRDMLSRQLGADSLVYNNLISGFL 257 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~-----~~p~~~~~~~Li~~~~~~g~~~---~A~~l~~~m~~~g~~pd~~~~~~Li~~~~ 257 (851)
++.+++++|.+.+..++..+. .+.+...|..+.+...+.-+.- ....+++.++.+-..--...|++|++.|.
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI 259 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence 999999999999988865421 1224556777766666544332 23344455444322212368999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHH----------------cC------CHHHHHHHHHHHHHhcC---
Q 038852 258 NLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFN----------------QG------KDKEAMQSYKSLMERNF--- 312 (851)
Q Consensus 258 ~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~----------------~g------~~~~A~~l~~~~~~~~~--- 312 (851)
+.|++++|.++|++.+..-.. +.-+..+.+.|+. .| +++-.+.-|+.+++...
T Consensus 260 r~g~~ekarDvyeeai~~v~t--vrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l 337 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQTVMT--VRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL 337 (835)
T ss_pred HhhhhHHHHHHHHHHHHhhee--hhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence 999999999999998764322 2222222222221 11 23334444555554332
Q ss_pred --------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 038852 313 --------RMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAV-NSDTFNIMVNECFKHGKFSEAIETFKKAG 383 (851)
Q Consensus 313 --------~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~-~~~~~~~L~~~~~~~g~~~~A~~~~~~~~ 383 (851)
..++..|..-+. +..|+..+-+.+|.+++.. +.|..... -...|..++..|.+.|+++.|..+|+++.
T Consensus 338 NsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 338 NSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 123344443333 3357788889999998875 44433221 34578999999999999999999999986
Q ss_pred cCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------------CHHHHHHHHHHHHHcCCH
Q 038852 384 THPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSP-----------------DVTTFRTLIDAYLKVERI 446 (851)
Q Consensus 384 ~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----------------d~~~~~~Ll~~~~~~g~~ 446 (851)
..+- ..+.--..+|..-+.+-.+..+++.|+++++++....-.+ +..+|..+++.....|-+
T Consensus 415 ~V~y-~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf 493 (835)
T KOG2047|consen 415 KVPY-KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF 493 (835)
T ss_pred cCCc-cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 6532 2221124567777777778889999999998875431111 234567777777788999
Q ss_pred HHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHh---cCChHHHHHH
Q 038852 447 DDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDF-LIYDVVVRGLCN---EGLFDMSKDI 522 (851)
Q Consensus 447 ~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~-~~~~~ll~a~~~---~g~~~~A~~~ 522 (851)
+....+|+++++..+.......| .+..+..+.-++++.++|++-+..-.-|+. ..|+..+.-+.+ ....+.|..+
T Consensus 494 estk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdL 572 (835)
T KOG2047|consen 494 ESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDL 572 (835)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 99999999999987654444333 445566777788999999887766334443 366666665543 3468899999
Q ss_pred HHHHHHcCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHhhhh
Q 038852 523 VDQMMKYGVGITPALQDF--VRETFGKAGRGEEIERVLNADRW 563 (851)
Q Consensus 523 ~~~m~~~g~~~~~~~~~~--L~~~~~~~G~~~eA~~ll~~~~~ 563 (851)
|+.+++ +.++...-+.+ .+.+-.+-|....|+.++++...
T Consensus 573 FEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 573 FEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999998 55544332222 33334455666777777766543
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.65 E-value=6.8e-16 Score=164.25 Aligned_cols=262 Identities=18% Similarity=0.288 Sum_probs=76.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 038852 144 AIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVD 223 (851)
Q Consensus 144 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~ 223 (851)
.+...+.+.|++++|++++++.+.......|...|..+...+...+++++|++.+++++..+.. +...+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~--~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA--NPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccc-cc
Confidence 3455556666666666666443332211223444555555556666666666666666655433 33445555555 56
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CccchhhHHHHHHHHHHcCCHHHHHH
Q 038852 224 AGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRC-LVYDGVVNATFMEWWFNQGKDKEAMQ 302 (851)
Q Consensus 224 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~-~~~d~~~~~~li~~~~~~g~~~~A~~ 302 (851)
.+++++|++++++..+.. .+...+..++..+...++++++.++++++.... ...+..+|..++.++.+.|+.++|++
T Consensus 90 ~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666655442 244455556666666666666666666655322 22345555566666666666666666
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 038852 303 SYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382 (851)
Q Consensus 303 l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 382 (851)
+|+++++.++. |..+.+.++..+...|+.+++.++++...+.. ++ +...+..++.+|...|+.++|+.+|+++
T Consensus 168 ~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~----~~~~~~~la~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 168 DYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA--PD----DPDLWDALAAAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp HHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HT----SCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cC----HHHHHHHHHHHhcccccccccccccccc
Confidence 66666665432 34455556666666666666666665555432 11 3345556666666666666666666666
Q ss_pred ccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038852 383 GTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREIS 422 (851)
Q Consensus 383 ~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 422 (851)
....+. |......++.++...|+.++|.++..++.
T Consensus 241 ~~~~p~-----d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 241 LKLNPD-----DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHSTT------HHHHHHHHHHHT----------------
T ss_pred cccccc-----ccccccccccccccccccccccccccccc
Confidence 554443 55566666666666666666666655543
No 53
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=7.4e-13 Score=147.61 Aligned_cols=290 Identities=15% Similarity=0.148 Sum_probs=222.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHH--HHHHHHHHHc
Q 038852 111 VQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSY--NNLINTYCDE 188 (851)
Q Consensus 111 l~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~--~~Li~~~~~~ 188 (851)
.......||++.|++.+.+.....-. ....|.....+..+.|++++|.+.|.++.+.. ++.... ......+...
T Consensus 91 gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~---~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 91 ALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELA---DNDQLPVEITRVRIQLAR 166 (398)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHC
Confidence 33445579999999888876543211 12233333444478999999999999996632 443322 2447788999
Q ss_pred CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCC
Q 038852 189 GKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADS-------LVYNNLISGFLNLGN 261 (851)
Q Consensus 189 g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~~~~~Li~~~~~~g~ 261 (851)
|+++.|++.++++.+.+|. +..++..++.+|.+.|++++|++++..+.+.+...+. .+|..++.......+
T Consensus 167 g~~~~Al~~l~~~~~~~P~--~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~ 244 (398)
T PRK10747 167 NENHAARHGVDKLLEVAPR--HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG 244 (398)
T ss_pred CCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999998877 7789999999999999999999999999998765222 133334444445556
Q ss_pred HHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 038852 262 LEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQ 341 (851)
Q Consensus 262 ~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~ 341 (851)
.+...++++.+.+.- ..+..+...++..+...|+.++|.+++++.++... +... .++.+.+..++.+++++.+++
T Consensus 245 ~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~--~~~l--~~l~~~l~~~~~~~al~~~e~ 319 (398)
T PRK10747 245 SEGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY--DERL--VLLIPRLKTNNPEQLEKVLRQ 319 (398)
T ss_pred HHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CHHH--HHHHhhccCCChHHHHHHHHH
Confidence 666666666654432 23778889999999999999999999999998543 3322 234444566999999999999
Q ss_pred HHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038852 342 MLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREI 421 (851)
Q Consensus 342 m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 421 (851)
.++.. |+ |...+..++..|.+.+++++|.+.|+++.... |+...|..+..++.+.|+.++|.+++++.
T Consensus 320 ~lk~~--P~----~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~------P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 320 QIKQH--GD----TPLLWSTLGQLLMKHGEWQEASLAFRAALKQR------PDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHhhC--CC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99854 43 88899999999999999999999999997653 37788889999999999999999999987
Q ss_pred Hh
Q 038852 422 ST 423 (851)
Q Consensus 422 ~~ 423 (851)
+.
T Consensus 388 l~ 389 (398)
T PRK10747 388 LM 389 (398)
T ss_pred Hh
Confidence 64
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=1.7e-12 Score=130.19 Aligned_cols=292 Identities=13% Similarity=0.175 Sum_probs=172.7
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHHcCCh
Q 038852 114 LIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN--IVSYNNLINTYCDEGKV 191 (851)
Q Consensus 114 l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd--~~~~~~Li~~~~~~g~~ 191 (851)
++-.+..++|+++|-+++..+ .-+..+-.+|.+.|.+.|..|.|+++...+++..+..-+ ......|+.-|...|-+
T Consensus 45 fLLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 45 FLLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred HHhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 334556677777777776543 234455556677777777777777777776554332221 22445566667777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHH
Q 038852 192 DEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADS----LVYNNLISGFLNLGNLEKANE 267 (851)
Q Consensus 192 ~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~~~~Li~~~~~~g~~~~A~~ 267 (851)
|.|+++|..+.+.+.+ -..+...|+..|-...+|++|+++-+++.+.+..... ..|.-|...+....++++|+.
T Consensus 124 DRAE~~f~~L~de~ef--a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 124 DRAEDIFNQLVDEGEF--AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hHHHHHHHHHhcchhh--hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 7777777776654433 3446666777777777777777777777666543222 245555555556667777777
Q ss_pred HHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 038852 268 LFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQ 347 (851)
Q Consensus 268 ~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~ 347 (851)
+++++...+.+ .+..-..+.+.+...|++..|++.++.+++.+...-..+...|..+|...|+.++.+..+.++.+...
T Consensus 202 ~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 202 LLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 77777766554 45555566666777777777777777777776655556666677777777777777777777666433
Q ss_pred CCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 038852 348 PPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCE---NEMLEEAEKLLREIS 422 (851)
Q Consensus 348 ~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~---~g~~~~A~~l~~~m~ 422 (851)
. ......+........-.+.|..++.+-+... |+...+..|+..-.. .|...+-+.++++|+
T Consensus 281 g-------~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~------Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 281 G-------ADAELMLADLIELQEGIDAAQAYLTRQLRRK------PTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred C-------ccHHHHHHHHHHHhhChHHHHHHHHHHHhhC------CcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 2 2233334443334444455555444433221 255556666655432 223344444444444
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=1.4e-12 Score=130.73 Aligned_cols=292 Identities=15% Similarity=0.149 Sum_probs=175.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-Cccc--hhhHHHHHHHHHHcCCHHHH
Q 038852 224 AGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRC-LVYD--GVVNATFMEWWFNQGKDKEA 300 (851)
Q Consensus 224 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~-~~~d--~~~~~~li~~~~~~g~~~~A 300 (851)
.+..++|+++|-+|++.+.. ...+..+|++.|.+.|+.|+|+++...+.+.- ...+ ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 45667777777777765433 44555667777777777777777777666541 1111 23334455667777777777
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHH
Q 038852 301 MQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFK 380 (851)
Q Consensus 301 ~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~ 380 (851)
+++|..+.+.+. .-....-.|+..|-...+|++|+++-+++.+.+..+.... -...|..|+..+....+++.|+.+++
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e-IAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE-IAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH-HHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 777777766432 2224566678888888888888888888777554432110 12345566666666777777777777
Q ss_pred HhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 038852 381 KAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESG 460 (851)
Q Consensus 381 ~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~ 460 (851)
++...++. .+..-..+.+.+...|++..|++.++.+.+.+..--..+...|..+|...|+.++.+.++.++.+..
T Consensus 205 kAlqa~~~-----cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 205 KALQADKK-----CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHhhCcc-----ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 77666544 4455555667777777777777777777766433334566677777777777777777777777654
Q ss_pred CccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHH
Q 038852 461 LRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCN---EGLFDMSKDIVDQMM 527 (851)
Q Consensus 461 ~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~---~g~~~~A~~~~~~m~ 527 (851)
...+.. .++........-.+.|..++.+-+.+ +|+...+..++..-.. .|...+-+.++.+|+
T Consensus 280 ~g~~~~--l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 280 TGADAE--LMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred CCccHH--HHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 333322 22333333444445555555554443 5666666666655432 233444444444444
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.9e-12 Score=137.47 Aligned_cols=283 Identities=14% Similarity=0.066 Sum_probs=208.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHH
Q 038852 210 SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFME 289 (851)
Q Consensus 210 ~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~ 289 (851)
+.+.....+.-|...+++.+.+++++++.+...- ....+..-|.++.+.|+..+-..+-.++++..+. ...+|..++.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpf-h~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPF-HLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCC-CcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHH
Confidence 5566667777777888888888888888877433 5555666666788888877777777777776555 6777888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHc
Q 038852 290 WWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKH 369 (851)
Q Consensus 290 ~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~ 369 (851)
.|...|++.+|.++|.+....+.... ..|..++..|.-.+..|.|+..|..+-+.-.. ...-+..++.-|.+.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fg-paWl~fghsfa~e~EhdQAmaaY~tAarl~~G------~hlP~LYlgmey~~t 393 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFG-PAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG------CHLPSLYLGMEYMRT 393 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcccc-HHHHHHhHHhhhcchHHHHHHHHHHHHHhccC------CcchHHHHHHHHHHh
Confidence 88888888888888888776654433 47888888888888888888888877663211 233455667778888
Q ss_pred CChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHHc
Q 038852 370 GKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTK--SLSP----DVTTFRTLIDAYLKV 443 (851)
Q Consensus 370 g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p----d~~~~~~Ll~~~~~~ 443 (851)
++++.|.++|..+....+. |...++.+..+....+.+.+|..+|...+.. .+.+ -..+++.|+.+|.+.
T Consensus 394 ~n~kLAe~Ff~~A~ai~P~-----Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAIAPS-----DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred ccHHHHHHHHHHHHhcCCC-----cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 8888888888888777666 7777788877777788888888888876621 0111 234578888888889
Q ss_pred CCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 038852 444 ERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRG 509 (851)
Q Consensus 444 g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a 509 (851)
+.+++|+..|++++.... .+..++..++-+|...|+++.|++.|.+.+.. +||..+-..++..
T Consensus 469 ~~~~eAI~~~q~aL~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKL 531 (611)
T ss_pred hhHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHH
Confidence 999999999988888753 35566667888888889999999888887764 6666665555553
No 57
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.58 E-value=2.6e-11 Score=134.66 Aligned_cols=445 Identities=13% Similarity=0.087 Sum_probs=302.5
Q ss_pred HHcCCHHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC
Q 038852 115 IRAGDLDAASYL----ARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGK 190 (851)
Q Consensus 115 ~~~g~~~~A~~l----~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~ 190 (851)
+-..+.+++.-. ++++....+.-|..+|..|.-++..+|+++.+.+.|++.+. +.......|+.+...|...|.
T Consensus 295 i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~--~~~~~~e~w~~~als~saag~ 372 (799)
T KOG4162|consen 295 IPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALP--FSFGEHERWYQLALSYSAAGS 372 (799)
T ss_pred cccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--hhhhhHHHHHHHHHHHHHhcc
Confidence 344455555433 33333334566889999999999999999999999999854 233456789999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcC--C--CCCHHHHHHHHHHHHhc------
Q 038852 191 VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFV-DAGRIGEAVDLLRDMLSRQ--L--GADSLVYNNLISGFLNL------ 259 (851)
Q Consensus 191 ~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~-~~g~~~~A~~l~~~m~~~g--~--~pd~~~~~~Li~~~~~~------ 259 (851)
-..|+.++++.....+...|...+....+.|. +.+.+++++++-.+++... . ......|..++-+|...
T Consensus 373 ~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~ 452 (799)
T KOG4162|consen 373 DSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANL 452 (799)
T ss_pred chHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCC
Confidence 99999999988776533334555555555555 4678888888888887721 1 12345566666666432
Q ss_pred -----CCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHH
Q 038852 260 -----GNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEE 334 (851)
Q Consensus 260 -----g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~ 334 (851)
....+++..++++++.+.. |..+...+.--|+..++++.|++..++.++.+...+...|..|+.++...+++.+
T Consensus 453 ~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~ 531 (799)
T KOG4162|consen 453 KSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKE 531 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHH
Confidence 1245677888888887766 6666666677799999999999999999999888899999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCC-----------------CC-------C
Q 038852 335 AQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPK-----------------SK-------P 390 (851)
Q Consensus 335 A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~-----------------~~-------~ 390 (851)
|+.+.+.+++.... |......-+..-...++.++++.....+...-. .. .
T Consensus 532 Al~vvd~al~E~~~------N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q 605 (799)
T KOG4162|consen 532 ALDVVDAALEEFGD------NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQ 605 (799)
T ss_pred HHHHHHHHHHHhhh------hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccc
Confidence 99999998874221 222222233333345555555544332211100 00 0
Q ss_pred CccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Q 038852 391 FAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLS--PD------VTTFRTLIDAYLKVERIDDALELFNRMVESGLR 462 (851)
Q Consensus 391 ~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--pd------~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~ 462 (851)
..-...++..+...... +.+.+..-.. +.+..+. ++ ...|......+.+.++.++|..++.++......
T Consensus 606 ~~~a~s~sr~ls~l~a~--~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l 682 (799)
T KOG4162|consen 606 PTDAISTSRYLSSLVAS--QLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL 682 (799)
T ss_pred ccccchhhHHHHHHHHh--hhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh
Confidence 00011122222111110 0000000000 1111111 12 235667778888999999999999998887533
Q ss_pred cchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHH--HHHHHHHcCCCCCHHHHHH
Q 038852 463 VVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKD--IVDQMMKYGVGITPALQDF 540 (851)
Q Consensus 463 ~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~--~~~~m~~~g~~~~~~~~~~ 540 (851)
....|......+...|.+++|.+.|......+.. +.....++..++.+.|+-..|.. ++.++++.+ ..+.+.|..
T Consensus 683 -~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~ 759 (799)
T KOG4162|consen 683 -SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYY 759 (799)
T ss_pred -hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 3444455677888899999999999998876443 55678889999999998888887 999999877 467899999
Q ss_pred HHHHHHhcCCHHHHHHHHHhhhhcCCCCCCCCCC
Q 038852 541 VRETFGKAGRGEEIERVLNADRWGYAAPVPPPRT 574 (851)
Q Consensus 541 L~~~~~~~G~~~eA~~ll~~~~~~~~~~p~~~~~ 574 (851)
++.++.+.|+.+.|.+.|......-.-.|--.|.
T Consensus 760 LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~pFs 793 (799)
T KOG4162|consen 760 LGEVFKKLGDSKQAAECFQAALQLEESNPVLPFS 793 (799)
T ss_pred HHHHHHHccchHHHHHHHHHHHhhccCCCccccc
Confidence 9999999999999999999988766655554453
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.58 E-value=1.1e-11 Score=128.25 Aligned_cols=288 Identities=15% Similarity=0.138 Sum_probs=206.2
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHH
Q 038852 115 IRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEG 194 (851)
Q Consensus 115 ~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A 194 (851)
+..|+|..|+++..+..+.+.. ....|..-+.+.-..||++.|-.++.++-+..+ ..+...+.+..+.....||++.|
T Consensus 95 l~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~-~~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAG-DDTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCC-CchHHHHHHHHHHHHhCCCchhH
Confidence 3568999999988886655533 234455555556678999999999988854322 34566677778888889999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHH
Q 038852 195 MNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADS-------LVYNNLISGFLNLGNLEKANE 267 (851)
Q Consensus 195 ~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~~~~~Li~~~~~~g~~~~A~~ 267 (851)
..-++.+.+..+. +.........+|.+.|++.+...++.++.+.+.-.|. .+|..+++-+...++.+.-..
T Consensus 173 ~~~v~~ll~~~pr--~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~ 250 (400)
T COG3071 173 RENVDQLLEMTPR--HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKT 250 (400)
T ss_pred HHHHHHHHHhCcC--ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 9999999888766 7778888999999999999999999999988866454 356666666666666666555
Q ss_pred HHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 038852 268 LFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQ 347 (851)
Q Consensus 268 ~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~ 347 (851)
.++..-.+ ..-+..+...++.-+.++|+.++|.++.++.++...+++ .. ....+.+-++.+.-++..++.++...
T Consensus 251 ~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~h~ 325 (400)
T COG3071 251 WWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQHP 325 (400)
T ss_pred HHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-HHHhhcCCCCchHHHHHHHHHHHhCC
Confidence 66655433 223566777777778888888888888888887766544 11 22334566777777777777766433
Q ss_pred CCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038852 348 PPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREIST 423 (851)
Q Consensus 348 ~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 423 (851)
. +...+..|+..|.+.+.|.+|.++|+.++... ++..+|+.+.++|.+.|+.++|..++++.+.
T Consensus 326 ~------~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~------~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 326 E------DPLLLSTLGRLALKNKLWGKASEALEAALKLR------PSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred C------ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC------CChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 2 56777788888888888888888887765432 2677777777777778887777777776653
No 59
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=2.2e-12 Score=130.23 Aligned_cols=392 Identities=13% Similarity=0.118 Sum_probs=251.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 038852 110 RVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEG 189 (851)
Q Consensus 110 ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g 189 (851)
+...+...|++++|...++.+.... .++...+..|..++.-.|.|.+|..+-.++- .+...-..|.....+.+
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~------k~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAP------KTPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCC------CChHHHHHHHHHHHHhC
Confidence 5677888999999999999877644 6677777778888888999999998877652 13333444555555667
Q ss_pred ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038852 190 KVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELF 269 (851)
Q Consensus 190 ~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~ 269 (851)
+-++-..+...+-. ...--..|+......-.+.+|+++|.+++..+.. -...-..++-+|.+..-++-+.+++
T Consensus 136 dEk~~~~fh~~LqD------~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e-y~alNVy~ALCyyKlDYydvsqevl 208 (557)
T KOG3785|consen 136 DEKRILTFHSSLQD------TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE-YIALNVYMALCYYKLDYYDVSQEVL 208 (557)
T ss_pred cHHHHHHHHHHHhh------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh-hhhhHHHHHHHHHhcchhhhHHHHH
Confidence 76665555554432 1123334555555555678888888887765322 1122233555667777777777777
Q ss_pred HHHHhcCCccchhhHHHHHHHHHHc--CCH---------------------------------HHHHHHHHHHHHhcCCC
Q 038852 270 DELKQRCLVYDGVVNATFMEWWFNQ--GKD---------------------------------KEAMQSYKSLMERNFRM 314 (851)
Q Consensus 270 ~~~~~~~~~~d~~~~~~li~~~~~~--g~~---------------------------------~~A~~l~~~~~~~~~~~ 314 (851)
+..++.-.. +....+..+....+. |+. +.|+.++-.+.+.-
T Consensus 209 ~vYL~q~pd-StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~I--- 284 (557)
T KOG3785|consen 209 KVYLRQFPD-STIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHI--- 284 (557)
T ss_pred HHHHHhCCC-cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhC---
Confidence 766654322 222333322222221 211 22222222222111
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcC-------ChHHHHHHHHHhccCCC
Q 038852 315 TPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHG-------KFSEAIETFKKAGTHPK 387 (851)
Q Consensus 315 ~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g-------~~~~A~~~~~~~~~~~~ 387 (851)
+..-..|+-.|.+.+++.+|..+.+++. |. ++.-|..-+..+...| .+.-|...|..+.....
T Consensus 285 -PEARlNL~iYyL~q~dVqeA~~L~Kdl~-----Pt----tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ 354 (557)
T KOG3785|consen 285 -PEARLNLIIYYLNQNDVQEAISLCKDLD-----PT----TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESAL 354 (557)
T ss_pred -hHhhhhheeeecccccHHHHHHHHhhcC-----CC----ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccc
Confidence 1233446667889999999999887653 22 3444444444444444 35566677766644322
Q ss_pred CCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhH
Q 038852 388 SKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSF 467 (851)
Q Consensus 388 ~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 467 (851)
... .+..-.++..++.-...+|+.+..++.+...-...|.+.+ .+..+++..|++.+|+++|-++....++....+
T Consensus 355 ecD---TIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y 430 (557)
T KOG3785|consen 355 ECD---TIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILY 430 (557)
T ss_pred ccc---cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHH
Confidence 222 2233455666677777899999999988876444444444 488999999999999999999988888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 038852 468 GTKVFNELITKGKVAECAPILTKMGEKDPKPDFL-IYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQ 538 (851)
Q Consensus 468 ~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~-~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 538 (851)
..+|.++|+++++.+-|.+++-++...+ +.. .+..+...|.+.+.+--|.+.|+.+...+ |+++.|
T Consensus 431 ~s~LArCyi~nkkP~lAW~~~lk~~t~~---e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD--P~pEnW 497 (557)
T KOG3785|consen 431 KSMLARCYIRNKKPQLAWDMMLKTNTPS---ERFSLLQLIANDCYKANEFYYAAKAFDELEILD--PTPENW 497 (557)
T ss_pred HHHHHHHHHhcCCchHHHHHHHhcCCch---hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC--CCcccc
Confidence 8899999999999999988877664422 333 34445667889999988999999887754 455444
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.57 E-value=7.7e-13 Score=132.20 Aligned_cols=230 Identities=14% Similarity=0.134 Sum_probs=124.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038852 179 NNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLN 258 (851)
Q Consensus 179 ~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~ 258 (851)
+-+.++|.+.|.+.+|.+.|...++.. +-.+||..|.++|.+.+..+.|+.+|.+.++.-+. |+.....+.+.+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~---~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~-~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF---PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF-DVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC---CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc-hhhhhhhhHHHHHH
Confidence 455666666666666666666665532 34446666666666666666666666666554222 44444455566666
Q ss_pred cCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 038852 259 LGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQAL 338 (851)
Q Consensus 259 ~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l 338 (851)
.++.++|.++|+++++.... ++.....+...|+-.++.+-|+.+|++++..|+. +...|+.+.-+|...+.+|-++..
T Consensus 303 m~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 66666666666666554433 4444444444455555555555555555555542 334455555555555555555555
Q ss_pred HHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038852 339 FEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLL 418 (851)
Q Consensus 339 ~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~ 418 (851)
|.+++.....++. ..++|.+|+.+....||+..|.+.|+-++..+.. +...+|.|...-.+.|++++|..++
T Consensus 381 f~RAlstat~~~~---aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-----h~ealnNLavL~~r~G~i~~Arsll 452 (478)
T KOG1129|consen 381 FQRALSTATQPGQ---AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-----HGEALNNLAVLAARSGDILGARSLL 452 (478)
T ss_pred HHHHHhhccCcch---hhhhhhccceeEEeccchHHHHHHHHHHhccCcc-----hHHHHHhHHHHHhhcCchHHHHHHH
Confidence 5555543333322 3445555555555555555555555555444333 4455555555555555555555555
Q ss_pred HHHH
Q 038852 419 REIS 422 (851)
Q Consensus 419 ~~m~ 422 (851)
....
T Consensus 453 ~~A~ 456 (478)
T KOG1129|consen 453 NAAK 456 (478)
T ss_pred HHhh
Confidence 5444
No 61
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.9e-10 Score=118.79 Aligned_cols=394 Identities=11% Similarity=0.070 Sum_probs=263.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRA-KRYDDAVALFKYFFDQADIVPNIVSYNNLINTY 185 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~ 185 (851)
-...+.++...++-+.|+.++....... ...--|.++..+.+. ++-.++.--+.+.+....+ .. ..|.++
T Consensus 100 ~r~~aecy~~~~n~~~Ai~~l~~~p~t~---r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~-----aL-~~i~~l 170 (564)
T KOG1174|consen 100 RRRAAECYRQIGNTDMAIETLLQVPPTL---RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPM-----AL-QVIEAL 170 (564)
T ss_pred HHHHHHHHHHHccchHHHHHHhcCCccc---cchhHHHHHHHHHhccccccHHHHhhhHHHHhcch-----HH-HHHHHH
Confidence 3456777778888888888776654322 222333444444433 3333444444544443211 11 112222
Q ss_pred HHcC--ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcC
Q 038852 186 CDEG--KVDEGMNVFRRIIETAPVGPSSNTYRHLTKGF--VDAGRIGEAVDLLRDMLSRQ-LGADSLVYNNLISGFLNLG 260 (851)
Q Consensus 186 ~~~g--~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~--~~~g~~~~A~~l~~~m~~~g-~~pd~~~~~~Li~~~~~~g 260 (851)
.+.+ -++.+-.....+ . ..++..+...-+.++ +-.++...|...+-.+.... +.-|+.....+++++...|
T Consensus 171 l~l~v~g~e~~S~~m~~~-~---~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~G 246 (564)
T KOG1174|consen 171 LELGVNGNEINSLVMHAA-T---VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNG 246 (564)
T ss_pred HHHhhcchhhhhhhhhhe-e---cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhc
Confidence 2211 111111111111 1 112222222223333 33444444444443333222 4557889999999999999
Q ss_pred CHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 038852 261 NLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFE 340 (851)
Q Consensus 261 ~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~ 340 (851)
+.++|+..|+.....++. +..........+...|+++....+...+....- .+...|..-+..+...++++.|+.+-+
T Consensus 247 dn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~e 324 (564)
T KOG1174|consen 247 DYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVE 324 (564)
T ss_pred CchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 999999999998876543 344444455557788999888888887776541 233445555666677899999999999
Q ss_pred HHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038852 341 QMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLRE 420 (851)
Q Consensus 341 ~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 420 (851)
+.++.+.. +...|..-+.++...|+.++|.-.|+.+....+. +..+|..|+.+|...|++.||..+-+.
T Consensus 325 K~I~~~~r------~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~-----rL~~Y~GL~hsYLA~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 325 KCIDSEPR------NHEALILKGRLLIALERHTQAVIAFRTAQMLAPY-----RLEIYRGLFHSYLAQKRFKEANALANW 393 (564)
T ss_pred HHhccCcc------cchHHHhccHHHHhccchHHHHHHHHHHHhcchh-----hHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 99885433 6778888899999999999999999999877655 889999999999999999999988887
Q ss_pred HHhCCCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC
Q 038852 421 ISTKSLSPDVTTFRTLI-DAYL-KVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKP 498 (851)
Q Consensus 421 m~~~g~~pd~~~~~~Ll-~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~p 498 (851)
..+. +.-+..+...++ ..|. .-.--++|.+++++.++..+.-... .+.+...+...|++++++.++++.+.. .+
T Consensus 394 ~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~A-V~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~ 469 (564)
T KOG1174|consen 394 TIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPA-VNLIAELCQVEGPTKDIIKLLEKHLII--FP 469 (564)
T ss_pred HHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHH-HHHHHHHHHhhCccchHHHHHHHHHhh--cc
Confidence 7664 444667777664 3333 3344688999999998876433333 345778889999999999999998874 67
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038852 499 DFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYG 530 (851)
Q Consensus 499 d~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g 530 (851)
|....+.|.+.+...+.+.+|++.|..+++.+
T Consensus 470 D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 470 DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 88999999999999999999999999988754
No 62
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=5.9e-11 Score=128.07 Aligned_cols=428 Identities=11% Similarity=0.072 Sum_probs=224.5
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT 184 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~ 184 (851)
.+++.-++.+...+++++|.....+++..+ +.|...+..-+-+++..++|++|+++.+.-. ....+.+.+..-+.+
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~---~~~~~~~~~fEKAYc 88 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNG---ALLVINSFFFEKAYC 88 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc---hhhhcchhhHHHHHH
Confidence 466777888899999999999999988765 4566677777778899999999997766431 111122222344556
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHhcCCH
Q 038852 185 YCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSL--VYNNLISGFLNLGNL 262 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--~~~~Li~~~~~~g~~ 262 (851)
..+.++.|+|+..++-+ + ..+..+...-+..+.+.|++++|+++|+.+.+.+.+ |.. .-.+++.+-. .
T Consensus 89 ~Yrlnk~Dealk~~~~~-~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~d~~~r~nl~a~~a----~ 158 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLKGL-D----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQDEERRANLLAVAA----A 158 (652)
T ss_pred HHHcccHHHHHHHHhcc-c----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHH----h
Confidence 67899999999999833 2 225557777788899999999999999999887543 221 1111111111 0
Q ss_pred HHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-------CCCH-------HHHHHHHHHHHh
Q 038852 263 EKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNF-------RMTP-------ATCNTLLEVLLK 328 (851)
Q Consensus 263 ~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-------~~~~-------~~~~~Li~~~~~ 328 (851)
-.+- +.+.. ......+-..+......+...|+|.+|+++++..++.+. ..+. .+-.-|..++-.
T Consensus 159 l~~~-~~q~v-~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 159 LQVQ-LLQSV-PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred hhHH-HHHhc-cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 0110 11111 111111233344445556677777777777777632110 0000 112234555666
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHH------------------------------------------
Q 038852 329 HEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNEC------------------------------------------ 366 (851)
Q Consensus 329 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~------------------------------------------ 366 (851)
.|+.++|..+|..++.....-. +.-....|+|+.+-
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~~D~--~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~ 314 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNPADE--PSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNA 314 (652)
T ss_pred hcchHHHHHHHHHHHHhcCCCc--hHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776543311 00111222222211
Q ss_pred ---HHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038852 367 ---FKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYC--ENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYL 441 (851)
Q Consensus 367 ---~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~ 441 (851)
...+..+.+.++....... .|. ..+.+++..+. +.....+|.+++....+....-...+...++....
T Consensus 315 lL~l~tnk~~q~r~~~a~lp~~------~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~i 387 (652)
T KOG2376|consen 315 LLALFTNKMDQVRELSASLPGM------SPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKI 387 (652)
T ss_pred HHHHHhhhHHHHHHHHHhCCcc------Cch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence 1111222222222111100 001 11222222211 11234455555555444321112334445555566
Q ss_pred HcCCHHHHHHHHH--------HHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhC--CCCCCHHHHHHHH----
Q 038852 442 KVERIDDALELFN--------RMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEK--DPKPDFLIYDVVV---- 507 (851)
Q Consensus 442 ~~g~~~~A~~~~~--------~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~--~~~pd~~~~~~ll---- 507 (851)
..|+++.|++++. .+.+.+..|... ..+...|.+.++.+.|..++.+.+.. .-........+++
T Consensus 388 s~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa 465 (652)
T KOG2376|consen 388 SQGNPEVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAA 465 (652)
T ss_pred hcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHh
Confidence 6677777777766 444443333322 23555666666666676666665542 0111112222222
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 038852 508 RGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNAD 561 (851)
Q Consensus 508 ~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~ 561 (851)
..-.+.|..++|..+++++++.+ ..+..+...++-+|++. +.+.|+.+-+.+
T Consensus 466 ~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 466 EFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 22234577777777777776643 34555555666666554 345555554443
No 63
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.55 E-value=2.1e-10 Score=125.21 Aligned_cols=395 Identities=14% Similarity=0.138 Sum_probs=205.7
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHH
Q 038852 114 LIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDE 193 (851)
Q Consensus 114 l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~ 193 (851)
+...|+.++|....+..++.+ ..+.+.|..++-.+...++|++|++.|..++.... .|...|.-|...-+..|+++.
T Consensus 51 L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~--dN~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK--DNLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred hhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHhhhh
Confidence 344455555555555555433 22344555555555555556666666655544221 234444444444445555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHH------HHHHhcCCHHHHH
Q 038852 194 GMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQL-GADSLVYNNLI------SGFLNLGNLEKAN 266 (851)
Q Consensus 194 A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~~~~~Li------~~~~~~g~~~~A~ 266 (851)
..+.-...++..+. ....|..++.++.-.|++..|.+++++...... .++...|.... ....+.|.+++|.
T Consensus 128 ~~~tr~~LLql~~~--~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~al 205 (700)
T KOG1156|consen 128 YLETRNQLLQLRPS--QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKAL 205 (700)
T ss_pred HHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 55554444444322 344555555555555555555555555544321 22333222211 2223444445554
Q ss_pred HHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC---------------
Q 038852 267 ELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEK--------------- 331 (851)
Q Consensus 267 ~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~--------------- 331 (851)
+.+...... +......-..-...+.+.+++++|..+|..++..++. +...|..+..++.+..+
T Consensus 206 e~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd-n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 206 EHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPD-NLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred HHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCch-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 444433221 1112222233344455555555555555555554321 11112222222211111
Q ss_pred --------------------HHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHH----HHHhccC--
Q 038852 332 --------------------KEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIET----FKKAGTH-- 385 (851)
Q Consensus 332 --------------------~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~----~~~~~~~-- 385 (851)
.+..-+++..++..|+.+ ++..+...|-.-...+-..++ ...+...
T Consensus 284 y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~--------vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~ 355 (700)
T KOG1156|consen 284 YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS--------VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGM 355 (700)
T ss_pred CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc--------hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccC
Confidence 122223334444444432 444444444332222211111 1111110
Q ss_pred ----CCCCCCccCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 386 ----PKSKPFAMDVA--GYNNIIARYCENEMLEEAEKLLREISTKSLSPD-VTTFRTLIDAYLKVERIDDALELFNRMVE 458 (851)
Q Consensus 386 ----~~~~~~~~d~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~ 458 (851)
+...--.|... ++..++..|-+.|+++.|+.+++..+.. .|+ +..|..-++++...|++++|..+++++.+
T Consensus 356 f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e 433 (700)
T KOG1156|consen 356 FNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE 433 (700)
T ss_pred CCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Confidence 00000123333 4456777888999999999999999864 455 45677777899999999999999999999
Q ss_pred cCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHH--------HHHH--HHHHHHhcCChHHHHHHHHHHHH
Q 038852 459 SGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFL--------IYDV--VVRGLCNEGLFDMSKDIVDQMMK 528 (851)
Q Consensus 459 ~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~--------~~~~--ll~a~~~~g~~~~A~~~~~~m~~ 528 (851)
.+ .++..+....+....++++.++|.+++.+..+.|. +.. .|-. -..+|.+.|++.+|++-|..+.+
T Consensus 434 lD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 434 LD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred cc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 87 45666666777888999999999999999988764 221 1211 23567788888888776666554
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.55 E-value=4.1e-12 Score=147.81 Aligned_cols=252 Identities=15% Similarity=0.112 Sum_probs=193.5
Q ss_pred CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038852 189 GKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDA---------GRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL 259 (851)
Q Consensus 189 g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~---------g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~ 259 (851)
+++++|+.+|+++++.+|. +...|..++.+|... +++++|+..++++++.+.. +..++..++.++...
T Consensus 275 ~~~~~A~~~~~~Al~ldP~--~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN--SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHc
Confidence 4568999999999998876 677787777766532 3489999999999998776 888999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 038852 260 GNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALF 339 (851)
Q Consensus 260 g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~ 339 (851)
|++++|+..|+++++.+.. +...+..++.+|...|++++|+..|+++++.++... ..+..++.++...|++++|+..+
T Consensus 352 g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~-~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA-AAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999999999998766 677888889999999999999999999999876533 33334555677789999999999
Q ss_pred HHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 340 EQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLR 419 (851)
Q Consensus 340 ~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~ 419 (851)
+++++.. .|+ +...+..++.+|...|++++|+..++++....+. +...++.+...|+..| ++|...++
T Consensus 430 ~~~l~~~-~p~----~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g--~~a~~~l~ 497 (553)
T PRK12370 430 DELRSQH-LQD----NPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-----GLIAVNLLYAEYCQNS--ERALPTIR 497 (553)
T ss_pred HHHHHhc-ccc----CHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-----hHHHHHHHHHHHhccH--HHHHHHHH
Confidence 9988653 232 5667888999999999999999999988655433 5566677777777777 47777777
Q ss_pred HHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 038852 420 EISTKS-LSPDVTTFRTLIDAYLKVERIDDALELFNRMVESG 460 (851)
Q Consensus 420 ~m~~~g-~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~ 460 (851)
++.+.. ..++...+ +...|.-.|+-+.+..+ +++.+.+
T Consensus 498 ~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 498 EFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 766532 12222222 44555667777777766 7777764
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=7.2e-13 Score=132.42 Aligned_cols=238 Identities=13% Similarity=0.057 Sum_probs=201.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHH
Q 038852 212 NTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWW 291 (851)
Q Consensus 212 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~ 291 (851)
.--+-+.++|.+.|.+.+|.+.|...++.- +-..||..|.++|.+.+..+.|+.+|.+.++.-+. |+.....+.+++
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~-~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF-DVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc-hhhhhhhhHHHH
Confidence 334678999999999999999999998863 46678888999999999999999999998886544 777778888999
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCC
Q 038852 292 FNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGK 371 (851)
Q Consensus 292 ~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~ 371 (851)
...++.++|.++|+.+++... .++.....+...|.-.++.+.|+.+|++++..|+. +.+.|++++.+|.-.+.
T Consensus 301 eam~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~------speLf~NigLCC~yaqQ 373 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ------SPELFCNIGLCCLYAQQ 373 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC------ChHHHhhHHHHHHhhcc
Confidence 999999999999999998753 34556666778888899999999999999999887 78999999999999999
Q ss_pred hHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 038852 372 FSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALE 451 (851)
Q Consensus 372 ~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~ 451 (851)
+|-++..|.++.......+. -..+|..|.......||+..|.+.|+-.+..+. -+...++.|+..-.+.|+++.|..
T Consensus 374 ~D~~L~sf~RAlstat~~~~--aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Ars 450 (478)
T KOG1129|consen 374 IDLVLPSFQRALSTATQPGQ--AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARS 450 (478)
T ss_pred hhhhHHHHHHHHhhccCcch--hhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHH
Confidence 99999999998765443332 345588898888899999999999998887533 257889999999999999999999
Q ss_pred HHHHHHHcCCc
Q 038852 452 LFNRMVESGLR 462 (851)
Q Consensus 452 ~~~~m~~~~~~ 462 (851)
++..+....+.
T Consensus 451 ll~~A~s~~P~ 461 (478)
T KOG1129|consen 451 LLNAAKSVMPD 461 (478)
T ss_pred HHHHhhhhCcc
Confidence 99988876543
No 66
>PRK12370 invasion protein regulator; Provisional
Probab=99.54 E-value=2e-12 Score=150.38 Aligned_cols=252 Identities=15% Similarity=0.043 Sum_probs=194.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcC
Q 038852 225 GRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLN---------LGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQG 295 (851)
Q Consensus 225 g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~---------~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g 295 (851)
+++++|+++|+++++.... +...|..++.+|.. .+++++|+..++++++.+.. +...+..+..++...|
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence 4689999999999998665 67778777776653 24589999999999998776 7888889999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHH
Q 038852 296 KDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEA 375 (851)
Q Consensus 296 ~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A 375 (851)
++++|+..|+++++.++. +...+..++.+|...|++++|+..|+++++.+ |+ +...+..++.++...|++++|
T Consensus 353 ~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~----~~~~~~~~~~~~~~~g~~eeA 425 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD--PT----RAAAGITKLWITYYHTGIDDA 425 (553)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CC----ChhhHHHHHHHHHhccCHHHH
Confidence 999999999999998753 45678889999999999999999999999854 43 344455556667789999999
Q ss_pred HHHHHHhccCC-CCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 038852 376 IETFKKAGTHP-KSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFN 454 (851)
Q Consensus 376 ~~~~~~~~~~~-~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~ 454 (851)
++.++++.... +. +...+..+..++...|++++|...++++... ...+...++.|...|+..| ++|...++
T Consensus 426 ~~~~~~~l~~~~p~-----~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g--~~a~~~l~ 497 (553)
T PRK12370 426 IRLGDELRSQHLQD-----NPILLSMQVMFLSLKGKHELARKLTKEISTQ-EITGLIAVNLLYAEYCQNS--ERALPTIR 497 (553)
T ss_pred HHHHHHHHHhcccc-----CHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhccH--HHHHHHHH
Confidence 99999986542 22 5566788889999999999999999998654 2223455666777777777 48888888
Q ss_pred HHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 038852 455 RMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKD 495 (851)
Q Consensus 455 ~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~ 495 (851)
++.+..-.-.... ..+...|.-.|+-+.+..+ +++.+.+
T Consensus 498 ~ll~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 498 EFLESEQRIDNNP-GLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHhhHhhcCc-hHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 8776422111111 1255667778888888777 8887763
No 67
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=4.4e-10 Score=116.13 Aligned_cols=431 Identities=11% Similarity=0.035 Sum_probs=275.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-------------------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 038852 110 RVQSLIRAGDLDAASYLARQAVFSRI-------------------RPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQAD 170 (851)
Q Consensus 110 ll~~l~~~g~~~~A~~l~~~~~~~~~-------------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~ 170 (851)
++........+..|...|..++.... .-+...-...+.+|...++-+.|+..+.......
T Consensus 49 l~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~- 127 (564)
T KOG1174|consen 49 LLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL- 127 (564)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc-
Confidence 34444555566666666665543211 1233444556677777788888887776553321
Q ss_pred CCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 038852 171 IVPNIVSYNNLINTYCD-EGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVY 249 (851)
Q Consensus 171 ~~pd~~~~~~Li~~~~~-~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~ 249 (851)
...-.|.++..+.+ .++-.++.--+.+.+...+. .... |.++.+.+ +..+...-..|-...+.++..+.
T Consensus 128 ---r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~-----aL~~-i~~ll~l~-v~g~e~~S~~m~~~~~~~~~dwl 197 (564)
T KOG1174|consen 128 ---RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPM-----ALQV-IEALLELG-VNGNEINSLVMHAATVPDHFDWL 197 (564)
T ss_pred ---cchhHHHHHHHHHhccccccHHHHhhhHHHHhcch-----HHHH-HHHHHHHh-hcchhhhhhhhhheecCCCccHH
Confidence 11122333333333 23333444445555544433 1111 11222111 00111111122222223222222
Q ss_pred HHHHH--HHHhcCCHHHHHHHHHHHHhc-CCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 038852 250 NNLIS--GFLNLGNLEKANELFDELKQR-CLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVL 326 (851)
Q Consensus 250 ~~Li~--~~~~~g~~~~A~~~~~~~~~~-~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~ 326 (851)
...+. +.+..++...|...+-.+... -+.-++.....+.++++..|+.++|+..|+.....++. +.......+..+
T Consensus 198 s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL 276 (564)
T KOG1174|consen 198 SKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLL 276 (564)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHH
Confidence 23333 334445555555554444333 23447889999999999999999999999998877641 223334445566
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHH
Q 038852 327 LKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYC 406 (851)
Q Consensus 327 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~ 406 (851)
...|+++....+...+...... ...-|..-+......++++.|+.+-++.+..... ++..|..-+.++.
T Consensus 277 ~~eg~~e~~~~L~~~Lf~~~~~------ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-----~~~alilKG~lL~ 345 (564)
T KOG1174|consen 277 GQEGGCEQDSALMDYLFAKVKY------TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-----NHEALILKGRLLI 345 (564)
T ss_pred HhccCHhhHHHHHHHHHhhhhc------chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-----cchHHHhccHHHH
Confidence 7889999988888888764211 3445666667777889999999999999887665 6777877788899
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHH-HHH-HHcCCHHHH
Q 038852 407 ENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVF-NEL-ITKGKVAEC 484 (851)
Q Consensus 407 ~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~-~~~-~~~g~~~~A 484 (851)
..|+.++|.-.|+...... +-+...|..|+.+|...|++.+|...-+...+.- ..+....+.+. .++ ..-.--++|
T Consensus 346 ~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKA 423 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKA 423 (564)
T ss_pred hccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHH
Confidence 9999999999999988652 2367899999999999999999998877776642 22233333221 222 223346889
Q ss_pred HHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038852 485 APILTKMGEKDPKPDF-LIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRW 563 (851)
Q Consensus 485 ~~ll~~m~~~~~~pd~-~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~ 563 (851)
.+++++.++. .|+. ...+.+...|...|..++++.++++.+.. -+|......|++++...+.+.+|++.|.....
T Consensus 424 Kkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 424 KKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 9999988775 4443 35566778889999999999999999874 37788888899999999999999999998877
Q ss_pred cCCCCC
Q 038852 564 GYAAPV 569 (851)
Q Consensus 564 ~~~~~p 569 (851)
..|+..
T Consensus 500 ~dP~~~ 505 (564)
T KOG1174|consen 500 QDPKSK 505 (564)
T ss_pred cCccch
Confidence 666443
No 68
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=3.6e-11 Score=128.79 Aligned_cols=398 Identities=14% Similarity=0.116 Sum_probs=249.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHH
Q 038852 108 HNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN-IVSYNNLINTYC 186 (851)
Q Consensus 108 ~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd-~~~~~~Li~~~~ 186 (851)
..-..+.+..|+++.|+.+|.+++..... |.+.|..-..+|.+.|+|++|++--.+.++ +.|+ ...|..++.++.
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~---l~p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRR---LNPDWAKGYSRKGAALF 81 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHh---cCCchhhHHHHhHHHHH
Confidence 44567888999999999999999977644 888999999999999999999987777655 3455 457899999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH---HHHHHHHhcC---CCCCHHHHHHHHHHHH---
Q 038852 187 DEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAV---DLLRDMLSRQ---LGADSLVYNNLISGFL--- 257 (851)
Q Consensus 187 ~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~---~l~~~m~~~g---~~pd~~~~~~Li~~~~--- 257 (851)
-.|+|++|+..|.+-++.++. |...+..|..++.......+.. .++..+...- .......|..++..+-
T Consensus 82 ~lg~~~eA~~ay~~GL~~d~~--n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p 159 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEKDPS--NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNP 159 (539)
T ss_pred hcccHHHHHHHHHHHhhcCCc--hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCc
Confidence 999999999999999998766 7788888888872211110000 0111110000 0000112222222221
Q ss_pred -------hcCCHHHHHHHHHHHH-----hcC-------Ccc----------------------chhhHHHHHHHHHHcCC
Q 038852 258 -------NLGNLEKANELFDELK-----QRC-------LVY----------------------DGVVNATFMEWWFNQGK 296 (851)
Q Consensus 258 -------~~g~~~~A~~~~~~~~-----~~~-------~~~----------------------d~~~~~~li~~~~~~g~ 296 (851)
....+..|...+.... ..+ ..| -..-...+++...+..+
T Consensus 160 ~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~ 239 (539)
T KOG0548|consen 160 TSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKD 239 (539)
T ss_pred HhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 1111112211111100 000 000 11234567777888889
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCC-ccCHHHHHHHHHHHHHcCChHHH
Q 038852 297 DKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQ-AVNSDTFNIMVNECFKHGKFSEA 375 (851)
Q Consensus 297 ~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-~~~~~~~~~L~~~~~~~g~~~~A 375 (851)
++.|++.|...++.+ -+..-++....+|...|++.+.+...++.++.|..-... ..-...+..++.+|.+.++++.|
T Consensus 240 f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~a 317 (539)
T KOG0548|consen 240 FETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGA 317 (539)
T ss_pred HHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHH
Confidence 999999999988887 455566778888999999998888888877765431000 00011233355567778889999
Q ss_pred HHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHH
Q 038852 376 IETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDV-TTFRTLIDAYLKVERIDDALELFN 454 (851)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~~~~~Ll~~~~~~g~~~~A~~~~~ 454 (851)
+.+|.+.+..... -..+.+....+++++..+...-. .|+. .-...-+..+.+.|++.+|++.|.
T Consensus 318 i~~~~kaLte~Rt-------------~~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 318 IKYYQKALTEHRT-------------PDLLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred HHHHHHHhhhhcC-------------HHHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 9999987654332 11222334455555555444332 2222 222333677778888888888888
Q ss_pred HHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038852 455 RMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYG 530 (851)
Q Consensus 455 ~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g 530 (851)
++++.++ .+...|.....||.+.|.+..|++-.+..++.+.. ....|..=..++....+|++|++.|.+.++.+
T Consensus 383 eAIkr~P-~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 383 EAIKRDP-EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHhcCC-chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888773 34555555777888888888888887777776322 23344444455566677888888888877754
No 69
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.52 E-value=2.3e-10 Score=118.64 Aligned_cols=290 Identities=14% Similarity=0.135 Sum_probs=169.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHH
Q 038852 224 AGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQS 303 (851)
Q Consensus 224 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l 303 (851)
.|+|..|++++.+..+.+.. ....|..-+++.-..||.+.+-.++.++.+.....+..+...........||+..|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 68888888888887777655 45667777778888888888888888888775555667777777888888888888888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCC--ccCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 038852 304 YKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQ--AVNSDTFNIMVNECFKHGKFSEAIETFKK 381 (851)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~--~~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 381 (851)
++.+.+.+... ..+......+|.+.|++.....++.++.+.+.-.+.. .+...+|..++.-....+..+.-..+++.
T Consensus 176 v~~ll~~~pr~-~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPRH-PEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 88888776543 3567778888888888888888888888876653210 00111233333333333333333333333
Q ss_pred hccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 038852 382 AGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGL 461 (851)
Q Consensus 382 ~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~ 461 (851)
.... .+.+...-..++.-+..+|+.++|.++.++.++...
T Consensus 255 ~pr~----------------------------------------lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~ 294 (400)
T COG3071 255 QPRK----------------------------------------LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW 294 (400)
T ss_pred ccHH----------------------------------------hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 3222 222333344444444445555555555544444443
Q ss_pred ccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038852 462 RVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFV 541 (851)
Q Consensus 462 ~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L 541 (851)
.+... ..-.+.+-++.+.-++..++..+.... +...+.+|...|.+.+.|.+|.++|+..++. .++...+..+
T Consensus 295 D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~l 367 (400)
T COG3071 295 DPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAEL 367 (400)
T ss_pred ChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHH
Confidence 33211 112233344444444444444333211 3345555555556666666666666655543 2555555556
Q ss_pred HHHHHhcCCHHHHHHHHHhhh
Q 038852 542 RETFGKAGRGEEIERVLNADR 562 (851)
Q Consensus 542 ~~~~~~~G~~~eA~~ll~~~~ 562 (851)
+++|.+.|+.++|.+++++..
T Consensus 368 a~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 368 ADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHcCChHHHHHHHHHHH
Confidence 666666666666666555554
No 70
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=5.7e-11 Score=127.34 Aligned_cols=381 Identities=15% Similarity=0.117 Sum_probs=247.0
Q ss_pred CCCccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHH
Q 038852 102 GPRLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPT-VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNN 180 (851)
Q Consensus 102 ~~~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~ 180 (851)
+..+-|.++..+++..|+|++|+.-..+.++. .|+ ...|+.++.++.-.|+|++|+..|.+-++... .|...++.
T Consensus 34 ~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~--~n~~L~~g 109 (539)
T KOG0548|consen 34 TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDP--SNKQLKTG 109 (539)
T ss_pred CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCC--chHHHHHh
Confidence 34567889999999999999999887777644 444 57899999999999999999999999887543 45677888
Q ss_pred HHHHHHHcCChHHHH---HHHHHHHHhCCC---CCCHHHHHHHHHHHHH----------cCCHHHHHHHHHHHH-----h
Q 038852 181 LINTYCDEGKVDEGM---NVFRRIIETAPV---GPSSNTYRHLTKGFVD----------AGRIGEAVDLLRDML-----S 239 (851)
Q Consensus 181 Li~~~~~~g~~~~A~---~l~~~~~~~~~~---~p~~~~~~~Li~~~~~----------~g~~~~A~~l~~~m~-----~ 239 (851)
|..++.......+.. .++..+ ..++. ......|..++..+-+ ..++..|...+.... .
T Consensus 110 l~~a~~~~~~~~~~~~~p~~~~~l-~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~ 188 (539)
T KOG0548|consen 110 LAQAYLEDYAADQLFTKPYFHEKL-ANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYA 188 (539)
T ss_pred HHHhhhHHHHhhhhccCcHHHHHh-hcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccc
Confidence 888772221110000 111111 00000 0011123333222211 011111211111100 0
Q ss_pred c-------CCCC------------C----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHH
Q 038852 240 R-------QLGA------------D----------SLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEW 290 (851)
Q Consensus 240 ~-------g~~p------------d----------~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~ 290 (851)
. +..| | ..-...++++..+..+++.|++.|...++.. -+...++....+
T Consensus 189 ~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~ 266 (539)
T KOG0548|consen 189 SGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAV 266 (539)
T ss_pred cccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHH
Confidence 0 0001 1 1235568888889999999999999999887 477888888999
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHH
Q 038852 291 WFNQGKDKEAMQSYKSLMERNFRMT------PATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVN 364 (851)
Q Consensus 291 ~~~~g~~~~A~~l~~~~~~~~~~~~------~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~ 364 (851)
|+..|++.+++...++.++.|...- ...+..++.+|.+.++++.|+.+|.+.+.....|+
T Consensus 267 ~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~-------------- 332 (539)
T KOG0548|consen 267 YLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPD-------------- 332 (539)
T ss_pred HHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHH--------------
Confidence 9999999999988888777654211 11233345577778899999999999887655432
Q ss_pred HHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 038852 365 ECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVE 444 (851)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g 444 (851)
...+....+++++..+......+.. ..-...-+..+.+.|++..|++.|.++++.. +-|...|....-+|.+.|
T Consensus 333 ~ls~lk~~Ek~~k~~e~~a~~~pe~-----A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~ 406 (539)
T KOG0548|consen 333 LLSKLKEAEKALKEAERKAYINPEK-----AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLG 406 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHhhChhH-----HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHh
Confidence 2234455566666555543322221 2222333667888999999999999999875 447889999999999999
Q ss_pred CHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 038852 445 RIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCN 512 (851)
Q Consensus 445 ~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~ 512 (851)
.+..|++-.+..++.+.. ....|..-+.++....+|++|++.|.+.++.+ |+..-+..-+.-|..
T Consensus 407 ~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 407 EYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCVE 471 (539)
T ss_pred hHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHH
Confidence 999999999999988643 33333345667777889999999999998874 444444333443433
No 71
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.49 E-value=9.8e-11 Score=131.76 Aligned_cols=296 Identities=15% Similarity=0.181 Sum_probs=136.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-
Q 038852 146 IAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDA- 224 (851)
Q Consensus 146 i~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~- 224 (851)
...+...|++++|++.+++... .+......+...+..|.+.|++++|..+|..+++.+|. |...|..|..++.-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd--n~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD--NYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHhhhc
Confidence 3445566777777766665422 22222334455566666667777777777776666654 555555555554222
Q ss_pred ----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHH
Q 038852 225 ----GRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLE-KANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKE 299 (851)
Q Consensus 225 ----g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~-~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~ 299 (851)
.+.+...++|+++...-.. ......+.-.+....++. .+..++..++.+|+.
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~--s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP--------------------- 143 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPR--SDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP--------------------- 143 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCcc--ccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---------------------
Confidence 2345555555555544322 222212221121111221 222333334444432
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----CCCC-----CCccCH--HHHHHHHHHHHH
Q 038852 300 AMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNH----QPPN-----IQAVNS--DTFNIMVNECFK 368 (851)
Q Consensus 300 A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~----~~p~-----~~~~~~--~~~~~L~~~~~~ 368 (851)
.+|+.|-..|....+.+-..+++....... ..+. ...... .++..++..|..
T Consensus 144 -----------------slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~ 206 (517)
T PF12569_consen 144 -----------------SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY 206 (517)
T ss_pred -----------------hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH
Confidence 233333333333333333333333332210 0000 000011 233444555555
Q ss_pred cCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 038852 369 HGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDD 448 (851)
Q Consensus 369 ~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~ 448 (851)
.|++++|++++++++...+. .+..|..-++.|-+.|++++|.+.++........ |..+-+..+..+.+.|++++
T Consensus 207 ~g~~~~Al~~Id~aI~htPt-----~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~ 280 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIEHTPT-----LVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEE 280 (517)
T ss_pred hCCHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHH
Confidence 66666666666655554433 4455555555566666666666666655554322 44444455555555666666
Q ss_pred HHHHHHHHHHcCCccch-------hHH-HHHHHHHHHcCCHHHHHHHHHHH
Q 038852 449 ALELFNRMVESGLRVVV-------SFG-TKVFNELITKGKVAECAPILTKM 491 (851)
Q Consensus 449 A~~~~~~m~~~~~~~~~-------~~~-~~L~~~~~~~g~~~~A~~ll~~m 491 (851)
|.+++....+.+..+.. .|| ...+.+|.+.|++..|++.|..+
T Consensus 281 A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 281 AEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66655555544432211 111 22344555555555555544443
No 72
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.49 E-value=6.4e-10 Score=123.78 Aligned_cols=415 Identities=13% Similarity=0.012 Sum_probs=286.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYC 186 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~ 186 (851)
+..+.-++...|+++.+.+.|++.+..- ......|+.+...|...|.-..|+.++++.+....-..|...+......|.
T Consensus 326 ~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~ 404 (799)
T KOG4162|consen 326 FDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCI 404 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHH
Confidence 4456667788899999999999977543 335678999999999999999999999987665433344445544445454
Q ss_pred -HcCChHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 038852 187 -DEGKVDEGMNVFRRIIETAPV---GPSSNTYRHLTKGFVDA-----------GRIGEAVDLLRDMLSRQLGADSLVYNN 251 (851)
Q Consensus 187 -~~g~~~~A~~l~~~~~~~~~~---~p~~~~~~~Li~~~~~~-----------g~~~~A~~l~~~m~~~g~~pd~~~~~~ 251 (851)
+.+.+++++++..+++...+. ......|..++-+|... ....+++..++++++.+.. |..+...
T Consensus 405 e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~ 483 (799)
T KOG4162|consen 405 ERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFY 483 (799)
T ss_pred hchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHH
Confidence 458888998888888763211 12344666666666532 2246788999999988766 5555556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC
Q 038852 252 LISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEK 331 (851)
Q Consensus 252 Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~ 331 (851)
+.--|+..++++.|++..++.++.+...+...|..|+.++...+++.+|+.+.+..++.-.. |-.....-+..-...++
T Consensus 484 lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~~~~~~i~~~~~~ 562 (799)
T KOG4162|consen 484 LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLMDGKIHIELTFND 562 (799)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhchhhhhhhhhccc
Confidence 77788889999999999999999987879999999999999999999999999988765321 11111222333344567
Q ss_pred HHHHHHHHHHHHHcCC-----------------------CCCCCccCHHHHHHHHHHHHHcCC---hHHHHHHHHHhccC
Q 038852 332 KEEAQALFEQMLDNHQ-----------------------PPNIQAVNSDTFNIMVNECFKHGK---FSEAIETFKKAGTH 385 (851)
Q Consensus 332 ~~~A~~l~~~m~~~~~-----------------------~p~~~~~~~~~~~~L~~~~~~~g~---~~~A~~~~~~~~~~ 385 (851)
.++|+.....++..-. .+........++..+.......+. ++.. +.+....
T Consensus 563 ~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~---Lp~s~~~ 639 (799)
T KOG4162|consen 563 REEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK---LPSSTVL 639 (799)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc---cCccccc
Confidence 7777666655543100 000000011122222221111100 0000 0000000
Q ss_pred C-CCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccc
Q 038852 386 P-KSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVV 464 (851)
Q Consensus 386 ~-~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~ 464 (851)
. +..........|......+.+.+..++|...+.+..+. ..-....|...+..+...|..++|.+.|..++..++...
T Consensus 640 ~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv 718 (799)
T KOG4162|consen 640 PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV 718 (799)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc
Confidence 0 00000111345677788888999999999888888765 233567888888999999999999999999999875444
Q ss_pred hhHHHHHHHHHHHcCCHHHHHH--HHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038852 465 VSFGTKVFNELITKGKVAECAP--ILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYG 530 (851)
Q Consensus 465 ~~~~~~L~~~~~~~g~~~~A~~--ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g 530 (851)
...+.+..++.+.|+..-|.. ++..+.+.+.. +...|-.+...+...|+.+.|.+.|.......
T Consensus 719 -~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 719 -PSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred -HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 444569999999999888887 99999998766 88999999999999999999999999987643
No 73
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.48 E-value=2.2e-11 Score=125.06 Aligned_cols=197 Identities=13% Similarity=0.129 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038852 140 FTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTK 219 (851)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~ 219 (851)
..+..++..+...|++++|++.|+++++... .+...+..++.+|...|++++|++.|+++++..+. +...+..++.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~ 107 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDP--DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN--NGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHH
Confidence 3444455555555555555555555544321 23444555555555555555555555555554433 3445555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHH
Q 038852 220 GFVDAGRIGEAVDLLRDMLSRQL-GADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDK 298 (851)
Q Consensus 220 ~~~~~g~~~~A~~l~~~m~~~g~-~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~ 298 (851)
++...|++++|+++|+++++... ..+...+..++.++...|++++|.+.|+++++.... +...+..++.++...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 55555555555555555554321 112234444555555555555555555555443322 2333444444444444444
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 038852 299 EAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQM 342 (851)
Q Consensus 299 ~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m 342 (851)
+|+++++++++.. ..+...+..++..+...|+.++|..+++.+
T Consensus 187 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 187 DARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4444444444431 122333333444444444444444444433
No 74
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.48 E-value=5.4e-12 Score=140.01 Aligned_cols=211 Identities=20% Similarity=0.161 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC-ccch-hhHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------C
Q 038852 247 LVYNNLISGFLNLGNLEKANELFDELKQR-----CL-VYDG-VVNATFMEWWFNQGKDKEAMQSYKSLMERN-------F 312 (851)
Q Consensus 247 ~~~~~Li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~d~-~~~~~li~~~~~~g~~~~A~~l~~~~~~~~-------~ 312 (851)
.+...|...|...|++++|+.+++..++. |. .+.. ...+.+...|...+++++|+.+|++++..- .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555777777777777777777766653 10 1122 222345666777788888887777776531 1
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--CCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCC
Q 038852 313 RMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQP--PNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKP 390 (851)
Q Consensus 313 ~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~--p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 390 (851)
..-..+++.|..+|.+.|++++|..+++++++.-.. -.....-...++.++..|+..+++++|..++.++.+......
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 112356777778888888888888888777652100 000000122445566666667777777666665432211100
Q ss_pred Cc---cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----C--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038852 391 FA---MDVAGYNNIIARYCENEMLEEAEKLLREISTKS----L--SP-DVTTFRTLIDAYLKVERIDDALELFNRMV 457 (851)
Q Consensus 391 ~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~--~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~m~ 457 (851)
-. .-..+++.|...|...|++++|+++|++++... . .. ....++.|...|.+.+++++|.++|.+.+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK 436 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 00 012345555555555555555555555543320 0 00 12234444455555555555555544443
No 75
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.47 E-value=8.4e-11 Score=133.12 Aligned_cols=428 Identities=12% Similarity=0.056 Sum_probs=274.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 038852 119 DLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVF 198 (851)
Q Consensus 119 ~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~ 198 (851)
+...|+..|-++++.... -...|..|+..|...-+...|.+.|+++++.+. .|...+..+.+.|++..++++|..+.
T Consensus 473 ~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa--tdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA--TDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhhhhHHHHHHHhhccccHHHHHHHH
Confidence 466677777666644322 246788899999888899999999999977543 46778899999999999999999996
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc
Q 038852 199 RRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLV 278 (851)
Q Consensus 199 ~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~ 278 (851)
-..-+..+...-...|..+.-.|.+.+++..|+.-|+.+++..++ |...|..|+.+|.+.|.+..|.++|.++...++.
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 655554443333445666777888899999999999999999887 9999999999999999999999999998876554
Q ss_pred cchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-------c
Q 038852 279 YDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNF------RMTPATCNTLLEVLLKHEKKEEAQALFEQMLD-------N 345 (851)
Q Consensus 279 ~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~------~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~-------~ 345 (851)
+.........+.+..|++++|+..+..++...- .--..++..+...+.-.|-..+|.++|++.++ .
T Consensus 629 -s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 629 -SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred -hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 344444455567889999999999988765321 11123333344444444444444444444332 2
Q ss_pred CCCCCCCccCHHHHHHHHHHHHHcCChH------HHHHH----HHHhccCCCC-------------CCCccCHHHHHHHH
Q 038852 346 HQPPNIQAVNSDTFNIMVNECFKHGKFS------EAIET----FKKAGTHPKS-------------KPFAMDVAGYNNII 402 (851)
Q Consensus 346 ~~~p~~~~~~~~~~~~L~~~~~~~g~~~------~A~~~----~~~~~~~~~~-------------~~~~~d~~~~~~li 402 (851)
.... +...|..+..+|.-.-..+ ..+.+ ++.+...... ..+..+...|..|+
T Consensus 708 ~~~~-----~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLG 782 (1238)
T KOG1127|consen 708 SLQS-----DRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLG 782 (1238)
T ss_pred hhhh-----hHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHh
Confidence 2111 2333333333321110000 00000 1111111000 00111345566666
Q ss_pred HHHHh--------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHH
Q 038852 403 ARYCE--------NEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNE 474 (851)
Q Consensus 403 ~~~~~--------~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~ 474 (851)
..|.+ ..+...|+..+.+.++.. ..+..+|+.|+.. ...|++.-|...|-+.+-........|.| +...
T Consensus 783 inylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~N-lgvL 859 (1238)
T KOG1127|consen 783 INYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLN-LGVL 859 (1238)
T ss_pred HHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheec-ccee
Confidence 65554 123346788888777653 2367788887766 66688888888888887776666666666 6677
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHhcCC
Q 038852 475 LITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMM----KYGVGITPALQDFVRETFGKAGR 550 (851)
Q Consensus 475 ~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~----~~g~~~~~~~~~~L~~~~~~~G~ 550 (851)
+.+..+++-|...|.+.....+. |...|..........|+.-++..+|..-. ..|-.+....+.+........|+
T Consensus 860 ~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~ 938 (1238)
T KOG1127|consen 860 VLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGN 938 (1238)
T ss_pred EEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccc
Confidence 78888999999998888776543 55666666666666777777777776522 22333444444555555566666
Q ss_pred HHHHHHHHHh
Q 038852 551 GEEIERVLNA 560 (851)
Q Consensus 551 ~~eA~~ll~~ 560 (851)
.++-+...++
T Consensus 939 ~e~~I~t~~k 948 (1238)
T KOG1127|consen 939 IEESINTARK 948 (1238)
T ss_pred hHHHHHHhhh
Confidence 6555544444
No 76
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.47 E-value=2.8e-11 Score=124.22 Aligned_cols=201 Identities=15% Similarity=0.080 Sum_probs=170.4
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT 184 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~ 184 (851)
..+..+...+...|++++|+..+++++... ..+...+..++..+...|++++|++.|+++++... .+...+..++.+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~ 108 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP--NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHH
Confidence 346678899999999999999999998764 34577888899999999999999999999987543 356778889999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 038852 185 YCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEK 264 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~ 264 (851)
+...|++++|++.|+++++..........+..++.++...|++++|.+.|+++++.... +...+..++..+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999875433335567888999999999999999999999987654 67788899999999999999
Q ss_pred HHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 038852 265 ANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMER 310 (851)
Q Consensus 265 A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~ 310 (851)
|.++++++++.. ..+...+..++..+...|+.++|..+++.+...
T Consensus 188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999998873 335667778888899999999999988877654
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.47 E-value=1.7e-11 Score=136.08 Aligned_cols=248 Identities=23% Similarity=0.225 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCc
Q 038852 211 SNTYRHLTKGFVDAGRIGEAVDLLRDMLSR-----QL-GADS-LVYNNLISGFLNLGNLEKANELFDELKQR-----CLV 278 (851)
Q Consensus 211 ~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~-----g~-~pd~-~~~~~Li~~~~~~g~~~~A~~~~~~~~~~-----~~~ 278 (851)
..+...|...|...|++++|+.+++.+++. |. .++. ...+.++..|...+++++|..+|++++.. |..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 356677999999999999999999998875 21 1233 23445788999999999999999998753 211
Q ss_pred --cchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-C
Q 038852 279 --YDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFR------M-TPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQ-P 348 (851)
Q Consensus 279 --~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~------~-~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~-~ 348 (851)
.-..+++.|..+|++.|++++|..+++++++.--+ + -...++.++..|...+++++|+.++.+.++.-. .
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 12567778888999999999999999887753211 1 113466788889999999999999998775311 0
Q ss_pred CCCCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCc---cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-
Q 038852 349 PNIQA-VNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFA---MDVAGYNNIIARYCENEMLEEAEKLLREIST- 423 (851)
Q Consensus 349 p~~~~-~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~- 423 (851)
+.... .-..++..|+..|...|++++|.++|++++......... -....++.|...|.+.+++++|..+|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 11110 135689999999999999999999999986543222211 1245678899999999999999999887543
Q ss_pred ---CCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 424 ---KSL-SPD-VTTFRTLIDAYLKVERIDDALELFNRMVE 458 (851)
Q Consensus 424 ---~g~-~pd-~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~ 458 (851)
.|. .|+ ..+|..|+..|...|++++|+++.+.+..
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 222 123 46788899999999999999998888764
No 78
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.46 E-value=1.9e-10 Score=129.38 Aligned_cols=309 Identities=17% Similarity=0.180 Sum_probs=184.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc
Q 038852 109 NRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDE 188 (851)
Q Consensus 109 ~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~ 188 (851)
-.+..+...|++++|++.++.... .+..........+..+.+.|++++|..+|..+++.+. .|...|..|..++...
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP--dn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP--DNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHhhh
Confidence 345677889999999999987443 3344456677888889999999999999999998643 3445555566555222
Q ss_pred -----CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 038852 189 -----GKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIG-EAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNL 262 (851)
Q Consensus 189 -----g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~-~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~ 262 (851)
.+.+...++|+++....+ ...+...+.-.+.....|. .+..++..++.+|+. .+|+.|-..|......
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~yp---~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKYP---RSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKA 159 (517)
T ss_pred cccccccHHHHHHHHHHHHHhCc---cccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHH
Confidence 356788899998877653 3333333433333333443 455667778888765 4677777777655554
Q ss_pred HHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHhCCCHHHHHHHHH
Q 038852 263 EKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTP--ATCNTLLEVLLKHEKKEEAQALFE 340 (851)
Q Consensus 263 ~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~--~~~~~Li~~~~~~g~~~~A~~l~~ 340 (851)
+-...++..+...--. .+.+.... ....-.++. .++..+...|...|++++|+++++
T Consensus 160 ~~i~~l~~~~~~~l~~---------------~~~~~~~~------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id 218 (517)
T PF12569_consen 160 AIIESLVEEYVNSLES---------------NGSFSNGD------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYID 218 (517)
T ss_pred HHHHHHHHHHHHhhcc---------------cCCCCCcc------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4445555544332100 00000000 000011222 233445566666677777777777
Q ss_pred HHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038852 341 QMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLRE 420 (851)
Q Consensus 341 ~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 420 (851)
++++. .|. ..+.|...+.+|.+.|++++|.+.++.+...+.. |...-+..+..+.+.|++++|.+++..
T Consensus 219 ~aI~h--tPt----~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-----DRyiNsK~aKy~LRa~~~e~A~~~~~~ 287 (517)
T PF12569_consen 219 KAIEH--TPT----LVELYMTKARILKHAGDLKEAAEAMDEARELDLA-----DRYINSKCAKYLLRAGRIEEAEKTASL 287 (517)
T ss_pred HHHhc--CCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-----hHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 76663 232 4566667777777777777777777766655444 555556666666677777777777666
Q ss_pred HHhCCCCCCHH------HH--HHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 421 ISTKSLSPDVT------TF--RTLIDAYLKVERIDDALELFNRMVE 458 (851)
Q Consensus 421 m~~~g~~pd~~------~~--~~Ll~~~~~~g~~~~A~~~~~~m~~ 458 (851)
..+.+..+... .| ...+.+|.+.|++..|++.|..+.+
T Consensus 288 Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 288 FTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred hcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 65544322111 22 3345666777777777766666554
No 79
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.46 E-value=1.8e-09 Score=109.06 Aligned_cols=316 Identities=14% Similarity=0.173 Sum_probs=182.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHH-HHHHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVS-YNNLINTY 185 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~-~~~Li~~~ 185 (851)
...+...++.+|.+..|+.-|..++..+ ..+-.++..-...|...|+-..|+.-|++.++ .+||... -.--..++
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHHHhchhh
Confidence 3456667777777777777777766432 11222333344556667777777777776655 3455332 22234456
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCC-CHHH------------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGP-SSNT------------YRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNL 252 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p-~~~~------------~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~L 252 (851)
.+.|.+++|..-|+.++..++..- +..+ ....+..+...|+...|++.+..+++..+- |...|..-
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l~~~R 195 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASLRQAR 195 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHHHHHH
Confidence 677777777777777776654210 1111 112233444556666666666666665444 66666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCH
Q 038852 253 ISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKK 332 (851)
Q Consensus 253 i~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~ 332 (851)
..+|...|+..+|+.-++.+.+.... +...+..+...+...|+.+.++...++.++.++.. ..+. ...+.+
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdH--K~Cf------~~YKkl 266 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDH--KLCF------PFYKKL 266 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcch--hhHH------HHHHHH
Confidence 66666666666666666555544333 44555555566666666666666666666554321 1110 011111
Q ss_pred HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCC-CCCccCHHHHHHHHHHHHhcCCH
Q 038852 333 EEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKS-KPFAMDVAGYNNIIARYCENEML 411 (851)
Q Consensus 333 ~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~d~~~~~~li~~~~~~g~~ 411 (851)
.+..+.++.|. .....++|.++++..+++.+..+. ..+ ....+..+-.++...+.+
T Consensus 267 kKv~K~les~e---------------------~~ie~~~~t~cle~ge~vlk~ep~~~~i--r~~~~r~~c~C~~~d~~~ 323 (504)
T KOG0624|consen 267 KKVVKSLESAE---------------------QAIEEKHWTECLEAGEKVLKNEPEETMI--RYNGFRVLCTCYREDEQF 323 (504)
T ss_pred HHHHHHHHHHH---------------------HHHhhhhHHHHHHHHHHHHhcCCcccce--eeeeeheeeecccccCCH
Confidence 22222222221 223556677777777776554333 111 223345566667778888
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 038852 412 EEAEKLLREISTKSLSP-DVTTFRTLIDAYLKVERIDDALELFNRMVESGL 461 (851)
Q Consensus 412 ~~A~~l~~~m~~~g~~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~ 461 (851)
.+|+....++++. .| |+.++.--..+|.....+++|+.-|+++.+.+.
T Consensus 324 ~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 324 GEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 8888888888864 34 477888888888888889999998888888763
No 80
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.44 E-value=1.1e-09 Score=110.62 Aligned_cols=301 Identities=13% Similarity=0.124 Sum_probs=165.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhc
Q 038852 181 LINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSL-VYNNLISGFLNL 259 (851)
Q Consensus 181 Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-~~~~Li~~~~~~ 259 (851)
|...+...|.+.+|+.-|..+++.++. +-.++...+..|...|+...|+.-|.++++. +||-. .-.--+..+.+.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~--~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPN--NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCch--hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhc
Confidence 333444444444444444444443322 2223333334444444444444444444443 22221 111223334444
Q ss_pred CCHHHHHHHHHHHHhcCCcc--------------chhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 038852 260 GNLEKANELFDELKQRCLVY--------------DGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEV 325 (851)
Q Consensus 260 g~~~~A~~~~~~~~~~~~~~--------------d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~ 325 (851)
|.++.|+.-|+.++..+..- ........+..+...|+...|++.+..+++..+ .|...+..-..+
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc 198 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQARAKC 198 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHH
Confidence 44444444444444432210 011122233446667888888888888887754 466677777888
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHH----
Q 038852 326 LLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNI---- 401 (851)
Q Consensus 326 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~l---- 401 (851)
|...|+...|+.-++.+-+.. -| +.+++..+...+...|+.+.++..++++++.+++... -...|..|
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs--~D----nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~--Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLS--QD----NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL--CFPFYKKLKKVV 270 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhcc--cc----chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh--HHHHHHHHHHHH
Confidence 888888888888877776532 22 6778888888888888888888888888776554220 11122111
Q ss_pred -----HHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHH
Q 038852 402 -----IARYCENEMLEEAEKLLREISTKSLSPDV---TTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFN 473 (851)
Q Consensus 402 -----i~~~~~~g~~~~A~~l~~~m~~~g~~pd~---~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~ 473 (851)
+....+.++|.++++..+.+++....... ..+..+-.+|...+++.+|+....++++.+. .++.++..-..
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~-~dv~~l~dRAe 349 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP-DDVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc-hHHHHHHHHHH
Confidence 11233455666666666666554222111 2334455566667777777777777776542 23444444566
Q ss_pred HHHHcCCHHHHHHHHHHHhhCC
Q 038852 474 ELITKGKVAECAPILTKMGEKD 495 (851)
Q Consensus 474 ~~~~~g~~~~A~~ll~~m~~~~ 495 (851)
+|.....||+|+.-|+++.+.+
T Consensus 350 A~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhcC
Confidence 7777777777777777776653
No 81
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.40 E-value=3.2e-10 Score=128.56 Aligned_cols=444 Identities=10% Similarity=-0.012 Sum_probs=279.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYC 186 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~ 186 (851)
+..+...|+...|...|...|+++...+ .-|...+..+.+.|++..++++|..+.-..-++.....-...|..+.-.|.
T Consensus 495 f~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyL 573 (1238)
T KOG1127|consen 495 FAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYL 573 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccccc
Confidence 3445555555567778888888887554 447788999999999999999999985544332222222334555667788
Q ss_pred HcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038852 187 DEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKAN 266 (851)
Q Consensus 187 ~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~ 266 (851)
+.+++..|+.-|..+++.+|. |...|..|+.+|.+.|++..|+++|+++....+. +...-.-....-+..|.+++|+
T Consensus 574 ea~n~h~aV~~fQsALR~dPk--D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~-s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTDPK--DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL-SKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred CccchhhHHHHHHHHhcCCch--hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH-hHHHHHHHHHHHHHhhhHHHHH
Confidence 899999999999999998876 8889999999999999999999999999887544 3333334555667889999999
Q ss_pred HHHHHHHhcC------CccchhhHHHHHHHHHHcCCHHHHHHHHHHHH-------HhcCCCCHHHHHHHHHHHHhCCCHH
Q 038852 267 ELFDELKQRC------LVYDGVVNATFMEWWFNQGKDKEAMQSYKSLM-------ERNFRMTPATCNTLLEVLLKHEKKE 333 (851)
Q Consensus 267 ~~~~~~~~~~------~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~-------~~~~~~~~~~~~~Li~~~~~~g~~~ 333 (851)
..+..++... ...-..++..+...+...|-..+|.+++++.+ ....-.+...|..+..+|.-.-..+
T Consensus 651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e 730 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEE 730 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhc
Confidence 9998876532 11123334444444444554455555554433 2222223334443333322110000
Q ss_pred ------HHHHHHHH-HHHcCCCCCCC---------------ccCHHHHHHHHHHHHH--------cCChHHHHHHHHHhc
Q 038852 334 ------EAQALFEQ-MLDNHQPPNIQ---------------AVNSDTFNIMVNECFK--------HGKFSEAIETFKKAG 383 (851)
Q Consensus 334 ------~A~~l~~~-m~~~~~~p~~~---------------~~~~~~~~~L~~~~~~--------~g~~~~A~~~~~~~~ 383 (851)
..+.+|.. ....+..++.. ..+...|..|+..|.+ ..+...|+.++++..
T Consensus 731 ~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV 810 (1238)
T KOG1127|consen 731 PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAV 810 (1238)
T ss_pred ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 01111111 11111111100 0134566667666655 223457888898887
Q ss_pred cCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Q 038852 384 THPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRV 463 (851)
Q Consensus 384 ~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~ 463 (851)
..... +...|+.|.-+ ...|.+.-|.-.|-+.+.. .+-+..+|..++..|.+..+++-|...|.+....++..
T Consensus 811 ~L~an-----n~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~n 883 (1238)
T KOG1127|consen 811 SLCAN-----NEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLN 883 (1238)
T ss_pred HHhhc-----cHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhhcCchh
Confidence 66444 67788877765 6667888777777666543 23367789999999999999999999999999887766
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHhh----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH---------cC
Q 038852 464 VVSFGTKVFNELITKGKVAECAPILTKMGE----KDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMK---------YG 530 (851)
Q Consensus 464 ~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~----~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~---------~g 530 (851)
...|.. ...+....|+.-+++.+|..-.+ .|-.++..-|.+.......+|++++-+...+++-. .+
T Consensus 884 l~~WlG-~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~ 962 (1238)
T KOG1127|consen 884 LVQWLG-EALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLG 962 (1238)
T ss_pred hHHHHH-HHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhc
Confidence 666643 33445567888888888876221 23334444444444455566666665554444332 13
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 038852 531 VGITPALQDFVRETFGKAGRGEEIERVLNADR 562 (851)
Q Consensus 531 ~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~ 562 (851)
.......|.+.+..+.+.+.+++|.++..++.
T Consensus 963 ~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 963 HPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred CcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33344555566666677777777776666554
No 82
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.39 E-value=1.4e-09 Score=120.51 Aligned_cols=377 Identities=15% Similarity=0.143 Sum_probs=212.5
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC--------CCCHHHHHHHHHHHHH
Q 038852 116 RAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADI--------VPNIVSYNNLINTYCD 187 (851)
Q Consensus 116 ~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~--------~pd~~~~~~Li~~~~~ 187 (851)
..|+.|.|.+-.+-+. +..+|..+..+|.+..++|-|.-.+-.|-...|. .++ .+-...+.....
T Consensus 740 tiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie 812 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE 812 (1416)
T ss_pred EeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence 4566666665554432 3467888888888888888777776665322111 111 111222333457
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038852 188 EGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANE 267 (851)
Q Consensus 188 ~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~ 267 (851)
.|.+++|+.+|++..+ |..|-+.|-..|.+++|+++-+.--+..++ .||...+.-+...+|.+.|++
T Consensus 813 LgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHH
Confidence 7888888888888754 334555677788888888876644333222 466677777777888888888
Q ss_pred HHHHHH----------hcCC---------ccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 038852 268 LFDELK----------QRCL---------VYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLK 328 (851)
Q Consensus 268 ~~~~~~----------~~~~---------~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~ 328 (851)
.|++.- ..++ ..|...|.-....+...|+.+.|+.+|..+. -|..+++..|-
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D~fs~VrI~C~ 950 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------DYFSMVRIKCI 950 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------hhhhheeeEee
Confidence 887632 1111 1244455555555556677777777777654 34456777777
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhc
Q 038852 329 HEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCEN 408 (851)
Q Consensus 329 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~ 408 (851)
.|+.++|..+-++-- |..+...|++.|...|++.+|+.+|.++.. +.+.|+.|-.+
T Consensus 951 qGk~~kAa~iA~esg-----------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa-------------fsnAIRlcKEn 1006 (1416)
T KOG3617|consen 951 QGKTDKAARIAEESG-----------DKAACYHLARMYENDGDVVKAVKFFTRAQA-------------FSNAIRLCKEN 1006 (1416)
T ss_pred ccCchHHHHHHHhcc-----------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-------------HHHHHHHHHhc
Confidence 777777777665432 456777788888888888888888876632 44444444333
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHH-----------HHHHHHHHHHHcCCHHHHHHHHHH--------HH--HcCCccchhH
Q 038852 409 EMLEEAEKLLREISTKSLSPDVT-----------TFRTLIDAYLKVERIDDALELFNR--------MV--ESGLRVVVSF 467 (851)
Q Consensus 409 g~~~~A~~l~~~m~~~g~~pd~~-----------~~~~Ll~~~~~~g~~~~A~~~~~~--------m~--~~~~~~~~~~ 467 (851)
+ +++-+.-+..|. +-. |.. -+...+..|.+.|.+.+|+++-=+ ++ +.+...+..+
T Consensus 1007 d-~~d~L~nlal~s--~~~-d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~l 1082 (1416)
T KOG3617|consen 1007 D-MKDRLANLALMS--GGS-DLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKL 1082 (1416)
T ss_pred C-HHHHHHHHHhhc--Cch-hHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHH
Confidence 2 222111111111 000 100 012233456666666666654111 11 2233345566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-HcCCCCC----HHHHHHHH
Q 038852 468 GTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMM-KYGVGIT----PALQDFVR 542 (851)
Q Consensus 468 ~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~-~~g~~~~----~~~~~~L~ 542 (851)
.+...+.++...+|++|..++-..++ |...+..| ...++.-..++-+.|. .++-.++ ..+...++
T Consensus 1083 l~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC-~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqva 1152 (1416)
T KOG3617|consen 1083 LRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLC-KNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVA 1152 (1416)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHH-hcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHH
Confidence 66666667777777777777766553 22233333 3333333334444442 1211122 22334478
Q ss_pred HHHHhcCCHHHHHHHHH
Q 038852 543 ETFGKAGRGEEIERVLN 559 (851)
Q Consensus 543 ~~~~~~G~~~eA~~ll~ 559 (851)
+++.+.|.+..|.+-|.
T Consensus 1153 e~c~qQG~Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1153 ELCLQQGAYHAATKKFT 1169 (1416)
T ss_pred HHHHhccchHHHHHHHh
Confidence 88888888777766554
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.38 E-value=2e-10 Score=122.70 Aligned_cols=223 Identities=17% Similarity=0.103 Sum_probs=113.8
Q ss_pred CChhHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 038852 153 KRYDDAVALFKYFFDQADIVPN--IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEA 230 (851)
Q Consensus 153 g~~~~A~~l~~~~~~~~~~~pd--~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A 230 (851)
+..+.++..|.+++......++ ...|..++.+|...|++++|+..|+++++.++. +..+|+.++..+...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~--~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD--MADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHCCCHHHH
Confidence 3445555555555543333222 234555666666666666666666666665544 555666666666666666666
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 038852 231 VDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMER 310 (851)
Q Consensus 231 ~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~ 310 (851)
++.|+++++.... +..+|..++.++...|++++|++.|++.++.+.. +. ........+...++.++|++.|++....
T Consensus 118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 6666666665444 4555666666666666666666666666655433 21 1111122233445566666666554432
Q ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccC
Q 038852 311 NFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNH-QPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTH 385 (851)
Q Consensus 311 ~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~-~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~ 385 (851)
.. ++ .|. ........|+..++ +.++.+.+.. ..+........+|..++..+.+.|++++|+..|+++...
T Consensus 195 ~~-~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 195 LD-KE--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred CC-cc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 21 11 121 11222223443332 2333333210 000000013346677777777777777777777776554
No 84
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=2.2e-08 Score=108.53 Aligned_cols=401 Identities=15% Similarity=0.150 Sum_probs=232.6
Q ss_pred CCCccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHH
Q 038852 102 GPRLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNL 181 (851)
Q Consensus 102 ~~~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~L 181 (851)
++..+++.-+.+++..++|++|+.+.+.-.. ...+.+.+..-+.+.++.++.|+|++.++.+ +. -|..+...-
T Consensus 44 dd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~-~~----~~~~ll~L~ 116 (652)
T KOG2376|consen 44 DDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNKLDEALKTLKGL-DR----LDDKLLELR 116 (652)
T ss_pred CcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHcccHHHHHHHHhcc-cc----cchHHHHHH
Confidence 3446778889999999999999966654221 0111111122334456899999999999843 21 244467777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 038852 182 INTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGN 261 (851)
Q Consensus 182 i~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~ 261 (851)
+..+.+.|+|++|+++|+.+.+.+-..-+...-..|+.+-. .-.+ .+++..-+. ..-+-..+.+....++..|+
T Consensus 117 AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~-~~~q~v~~v-~e~syel~yN~Ac~~i~~gk 190 (652)
T KOG2376|consen 117 AQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQV-QLLQSVPEV-PEDSYELLYNTACILIENGK 190 (652)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhH-HHHHhccCC-CcchHHHHHHHHHHHHhccc
Confidence 88899999999999999999776433222222222221111 1111 112221111 12133444456667778888
Q ss_pred HHHHHHHHHHHHhcCCc-------cc-------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCH---HHHHHHHH
Q 038852 262 LEKANELFDELKQRCLV-------YD-------GVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTP---ATCNTLLE 324 (851)
Q Consensus 262 ~~~A~~~~~~~~~~~~~-------~d-------~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~---~~~~~Li~ 324 (851)
+..|+++++..++.+.. -+ ..+..-+..++...|+.++|..+|..++..+..... +.-|.|+.
T Consensus 191 y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva 270 (652)
T KOG2376|consen 191 YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVA 270 (652)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhh
Confidence 88888888877332110 01 112334455677788888888888888876653321 11222221
Q ss_pred HHHhCCCHH----------------HHH------------------HHH----HHHHH--cCCCCCCCccCHHHHHHHHH
Q 038852 325 VLLKHEKKE----------------EAQ------------------ALF----EQMLD--NHQPPNIQAVNSDTFNIMVN 364 (851)
Q Consensus 325 ~~~~~g~~~----------------~A~------------------~l~----~~m~~--~~~~p~~~~~~~~~~~~L~~ 364 (851)
+-....-++ .++ .+| +.+.+ ....+.. -...+-.++.
T Consensus 271 ~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~---p~~~~~~ll~ 347 (652)
T KOG2376|consen 271 LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMS---PESLFPILLQ 347 (652)
T ss_pred hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccC---chHHHHHHHH
Confidence 110000000 000 000 00000 0011110 1223333333
Q ss_pred HH--HHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCCCCCHHHHH
Q 038852 365 EC--FKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLR--------EISTKSLSPDVTTFR 434 (851)
Q Consensus 365 ~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~--------~m~~~g~~pd~~~~~ 434 (851)
.+ ++.....++.+++....+..+.. ...+...++......|+++.|++++. .+.+.+.. ..+..
T Consensus 348 ~~t~~~~~~~~ka~e~L~~~~~~~p~~----s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~ 421 (652)
T KOG2376|consen 348 EATKVREKKHKKAIELLLQFADGHPEK----SKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVG 421 (652)
T ss_pred HHHHHHHHHHhhhHHHHHHHhccCCch----hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHH
Confidence 22 22235777888887775544432 35566677788888999999999999 44444333 34556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc------CCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 038852 435 TLIDAYLKVERIDDALELFNRMVES------GLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVR 508 (851)
Q Consensus 435 ~Ll~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~ 508 (851)
.+...|.+.++.+.|..++++++.. +-..-...+..++..-.+.|+.++|..+++++.+.. ..|..+...++.
T Consensus 422 aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~ 500 (652)
T KOG2376|consen 422 AIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVT 500 (652)
T ss_pred HHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHH
Confidence 7788889999999999999999863 111112222334444457899999999999999864 348889999999
Q ss_pred HHHhcCChHHHHHHHHHH
Q 038852 509 GLCNEGLFDMSKDIVDQM 526 (851)
Q Consensus 509 a~~~~g~~~~A~~~~~~m 526 (851)
+|++. +.+.|..+-..+
T Consensus 501 a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 501 AYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHhc-CHHHHHHHhhcC
Confidence 99875 466776665554
No 85
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.36 E-value=3.8e-10 Score=120.56 Aligned_cols=213 Identities=14% Similarity=0.009 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHH
Q 038852 317 ATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVA 396 (851)
Q Consensus 317 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~ 396 (851)
..|..++.+|...|++++|+..|+++++. .|+ +..+|+.++..|...|++++|++.|+++.+..+. +..
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~----~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-----~~~ 133 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALAL--RPD----MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-----YNY 133 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----CHH
Confidence 34555666666666666666666666653 232 5566666666666666666666666666655444 455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHH
Q 038852 397 GYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELI 476 (851)
Q Consensus 397 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~ 476 (851)
+|..++.++...|++++|++.|++.++.. |+..........+...++.++|+..|++........ .+.. ...+.
T Consensus 134 a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~--~~~~--~~~~~ 207 (296)
T PRK11189 134 AYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKE--QWGW--NIVEF 207 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCcc--ccHH--HHHHH
Confidence 56666666666666666666666666542 222111111112234456666666665544332111 1111 12222
Q ss_pred HcCCHHHHHHHHHHHhh---CCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 038852 477 TKGKVAECAPILTKMGE---KDPK---PDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGK 547 (851)
Q Consensus 477 ~~g~~~~A~~ll~~m~~---~~~~---pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~ 547 (851)
..|+++++ +.++.+.+ ..+. .....|..+...+.+.|++++|+..|+++++.+.....+....+++....
T Consensus 208 ~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 208 YLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALL 283 (296)
T ss_pred HccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 33444332 23333321 1111 12346777777888888888888888888876543333333344444433
No 86
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=6.5e-11 Score=127.90 Aligned_cols=257 Identities=16% Similarity=0.126 Sum_probs=188.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 038852 181 LINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLG 260 (851)
Q Consensus 181 Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g 260 (851)
.+.-+.+.|++.+|.-+|+.+++.+|. +..+|..|+......++-..|+..|+++++.... +..+...|+..|...|
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqdP~--haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQDPQ--HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEG 367 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhChH--HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhh
Confidence 344467888888888888888888777 7888888888888888888888888888888766 7788888888888888
Q ss_pred CHHHHHHHHHHHHhcCCcc--------chhhHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhCCC
Q 038852 261 NLEKANELFDELKQRCLVY--------DGVVNATFMEWWFNQGKDKEAMQSYKSLMER-NFRMTPATCNTLLEVLLKHEK 331 (851)
Q Consensus 261 ~~~~A~~~~~~~~~~~~~~--------d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~-~~~~~~~~~~~Li~~~~~~g~ 331 (851)
.-..|.++|++.++..+.. +...-.. ..+.....+....++|-++... +.+.|..+...|+..|...|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 8888888888776543221 0000000 1122233444555666665544 334777888888888888899
Q ss_pred HHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCH
Q 038852 332 KEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEML 411 (851)
Q Consensus 332 ~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~ 411 (851)
+++|+++|+.++. ++|+ |..+|+.|+..+....+.++|+..|.+++...+. -+.++..|+-+|...|.+
T Consensus 446 fdraiDcf~~AL~--v~Pn----d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-----yVR~RyNlgIS~mNlG~y 514 (579)
T KOG1125|consen 446 FDRAVDCFEAALQ--VKPN----DYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-----YVRVRYNLGISCMNLGAY 514 (579)
T ss_pred HHHHHHHHHHHHh--cCCc----hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-----eeeeehhhhhhhhhhhhH
Confidence 9999999998887 4565 8888999999998888999999999988877665 566677788888889999
Q ss_pred HHHHHHHHHHHhCC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 038852 412 EEAEKLLREISTKS---------LSPDVTTFRTLIDAYLKVERIDDALELF 453 (851)
Q Consensus 412 ~~A~~l~~~m~~~g---------~~pd~~~~~~Ll~~~~~~g~~~~A~~~~ 453 (851)
++|.+.|-+++... ...+..+|.+|=.++...++.|.+..+.
T Consensus 515 kEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 515 KEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 99888887765421 1123457777777777777777555544
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.35 E-value=4.6e-09 Score=116.08 Aligned_cols=308 Identities=12% Similarity=0.005 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNI-VSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHL 217 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~-~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~L 217 (851)
...|..+...+...|+.+++.+.+.+..+......+. .........+...|++++|.++++++++..|. |...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~--~~~a~~~- 82 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR--DLLALKL- 82 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--cHHHHHH-
Confidence 3445555555666677777777776665543333332 22233344556778888888888888777655 4444442
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHH
Q 038852 218 TKGFVD----AGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFN 293 (851)
Q Consensus 218 i~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~ 293 (851)
...+.. .+..+.+.+.++..... ...+...+..++.++...|++++|++.++++++.... +...+..+..+|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~ 160 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEM 160 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHH
Confidence 223333 33444444444431111 1113345556667777888888888888888776654 56667777778888
Q ss_pred cCCHHHHHHHHHHHHHhcCC-CC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHH-H--HHHHHHH
Q 038852 294 QGKDKEAMQSYKSLMERNFR-MT--PATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTF-N--IMVNECF 367 (851)
Q Consensus 294 ~g~~~~A~~l~~~~~~~~~~-~~--~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~-~--~L~~~~~ 367 (851)
.|++++|+.++++.++.... ++ ...|..+...+...|++++|+.+|++++....... ..... . .++..+.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~ 236 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESD----PALDLLDAASLLWRLE 236 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCC----hHHHHhhHHHHHHHHH
Confidence 88888888888877765432 11 23455677888888888888888888764322111 11111 1 2233333
Q ss_pred HcCChHHHHHH--H-HHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---C-----CHHHHHHH
Q 038852 368 KHGKFSEAIET--F-KKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLS---P-----DVTTFRTL 436 (851)
Q Consensus 368 ~~g~~~~A~~~--~-~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---p-----d~~~~~~L 436 (851)
..|..+.+.++ + ......... . .........+.++...|+.++|..+++.+...... - ........
T Consensus 237 ~~g~~~~~~~w~~~~~~~~~~~~~-~--~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~ 313 (355)
T cd05804 237 LAGHVDVGDRWEDLADYAAWHFPD-H--GLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAE 313 (355)
T ss_pred hcCCCChHHHHHHHHHHHHhhcCc-c--cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHH
Confidence 44433333332 1 111111010 1 01222234566667778888888888776553211 0 11122233
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 038852 437 IDAYLKVERIDDALELFNRMVE 458 (851)
Q Consensus 437 l~~~~~~g~~~~A~~~~~~m~~ 458 (851)
..++...|++++|++.+..++.
T Consensus 314 A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 314 ALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3345566777777776666654
No 88
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=2.1e-09 Score=106.68 Aligned_cols=416 Identities=13% Similarity=0.094 Sum_probs=206.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHH-HHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYN-NLINTY 185 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~-~Li~~~ 185 (851)
+...+..+++..++++|++++..-.... ..+......|..+|+...++..|.+.|+.+-.. .|...-|. .-...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHHH
Confidence 4455566666666666666655444332 224555556666666666666666666665321 12222221 123344
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGPSS--NTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLE 263 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p~~--~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~ 263 (851)
.+.+.+.+|+++...|... ++. .+...-.......+++..+..+++..-..| +..+.+..+....+.|+++
T Consensus 89 Y~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 5556666666666555321 111 111111222233455555555555444221 3444555555555666666
Q ss_pred HHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHH----HHHHHHHHhCCCHHHHHHHH
Q 038852 264 KANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATC----NTLLEVLLKHEKKEEAQALF 339 (851)
Q Consensus 264 ~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~----~~Li~~~~~~g~~~~A~~l~ 339 (851)
.|.+-|..+.+-+-- ...+...+..+..+.|+++.|+++..+++++|++..+..- ...++ .+.+..-+.+.
T Consensus 162 aAvqkFqaAlqvsGy-qpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiD----vrsvgNt~~lh 236 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGY-QPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGID----VRSVGNTLVLH 236 (459)
T ss_pred HHHHHHHHHHhhcCC-CchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCc----hhcccchHHHH
Confidence 666666665554322 2222223333445556666666666666665543322110 00000 00000111111
Q ss_pred HHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 340 EQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLR 419 (851)
Q Consensus 340 ~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~ 419 (851)
... -...++.-...+.+.|+++.|.+.+..|.- ......|.++...+...-. .+++-+..+-+.
T Consensus 237 ~Sa------------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPP---RaE~elDPvTLHN~Al~n~-~~~p~~g~~KLq 300 (459)
T KOG4340|consen 237 QSA------------LVEAFNLKAAIEYQLRNYEAAQEALTDMPP---RAEEELDPVTLHNQALMNM-DARPTEGFEKLQ 300 (459)
T ss_pred HHH------------HHHHhhhhhhhhhhcccHHHHHHHhhcCCC---cccccCCchhhhHHHHhcc-cCCccccHHHHH
Confidence 111 123566667778899999999998887743 3333447888777654322 445555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc-chhHHHHHHHHHHHc-CCHHHHHHHHHHHhhCCCC
Q 038852 420 EISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRV-VVSFGTKVFNELITK-GKVAECAPILTKMGEKDPK 497 (851)
Q Consensus 420 ~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~L~~~~~~~-g~~~~A~~ll~~m~~~~~~ 497 (851)
-++..+. --..||..|+-.||+..-++.|..++.+-.....+- +...|+ |+++++.+ -..++|.+-++.+...-.
T Consensus 301 FLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~- 377 (459)
T KOG4340|consen 301 FLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLT- 377 (459)
T ss_pred HHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHH-
Confidence 5555432 246788889999999999999988876644332222 223333 55666544 345666555544432100
Q ss_pred CCHHHHHHHHHHH-HhcCC----hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038852 498 PDFLIYDVVVRGL-CNEGL----FDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRW 563 (851)
Q Consensus 498 pd~~~~~~ll~a~-~~~g~----~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~ 563 (851)
...-...+..- .+..+ ..++++-|++.++. -..+...-++.|++..++..++++|+.-.+
T Consensus 378 --~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 378 --EKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred --HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 00000011110 11111 11222222222221 112233356678889999999999987543
No 89
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=8.3e-11 Score=127.10 Aligned_cols=257 Identities=11% Similarity=0.034 Sum_probs=204.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCC
Q 038852 217 LTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGK 296 (851)
Q Consensus 217 Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~ 296 (851)
.+..+.+.|++.+|.-+|+.+++.++. +...|..|+..-...++-..|+..+++.++.+.. +..+...|...|...|.
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhh
Confidence 455677899999999999999999877 8899999999999999999999999999998877 88899999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHH---------HHHHHhCCCHHHHHHHHHHHHHcCC-CCCCCccCHHHHHHHHHHH
Q 038852 297 DKEAMQSYKSLMERNFRMTPATCNTL---------LEVLLKHEKKEEAQALFEQMLDNHQ-PPNIQAVNSDTFNIMVNEC 366 (851)
Q Consensus 297 ~~~A~~l~~~~~~~~~~~~~~~~~~L---------i~~~~~~g~~~~A~~l~~~m~~~~~-~p~~~~~~~~~~~~L~~~~ 366 (851)
-..|+++|++.+...++. .|... -..+.....+....++|-++..... .. |.++...|+..|
T Consensus 369 q~~Al~~L~~Wi~~~p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~-----DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKI-----DPDVQSGLGVLY 440 (579)
T ss_pred HHHHHHHHHHHHHhCccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCC-----ChhHHhhhHHHH
Confidence 999999999998765321 11100 0123334445666677766655322 22 788999999999
Q ss_pred HHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 038852 367 FKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERI 446 (851)
Q Consensus 367 ~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~ 446 (851)
.-.|+|++|+++|+.++...+. |...||.|+..++...+.++|+..|.++++.... =+.++..|+.+|...|.+
T Consensus 441 ~ls~efdraiDcf~~AL~v~Pn-----d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~y 514 (579)
T KOG1125|consen 441 NLSGEFDRAVDCFEAALQVKPN-----DYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAY 514 (579)
T ss_pred hcchHHHHHHHHHHHHHhcCCc-----hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhH
Confidence 9999999999999999988777 9999999999999999999999999999987543 556667799999999999
Q ss_pred HHHHHHHHHHHHcCCc---------cchhHHHHHHHHHHHcCCHHHHHHHHH
Q 038852 447 DDALELFNRMVESGLR---------VVVSFGTKVFNELITKGKVAECAPILT 489 (851)
Q Consensus 447 ~~A~~~~~~m~~~~~~---------~~~~~~~~L~~~~~~~g~~~~A~~ll~ 489 (851)
++|.+.|-.++....+ .+..++..|=.++...++.|-+.+...
T Consensus 515 kEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~~ 566 (579)
T KOG1125|consen 515 KEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAAP 566 (579)
T ss_pred HHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhcc
Confidence 9999999988753211 123455556677777888776555543
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.33 E-value=1e-08 Score=113.22 Aligned_cols=166 Identities=13% Similarity=0.035 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSS-NTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~-~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
...|..++..+...|+.+++.+.+.+..+..+...+. ......+..+...|++++|.++++++++.... |...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-h
Confidence 4566777777777788888777777776665443332 22333445566778888888888888776444 4444442 3
Q ss_pred HHHHhcC----CHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Q 038852 254 SGFLNLG----NLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKH 329 (851)
Q Consensus 254 ~~~~~~g----~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~ 329 (851)
..+...| ..+.+.+.++..... ...+......+..++...|++++|++.++++++.... +...+..+..+|...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~ 161 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHc
Confidence 3333333 333333333321111 1111222223334444445555555555554444322 223344444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 038852 330 EKKEEAQALFEQMLD 344 (851)
Q Consensus 330 g~~~~A~~l~~~m~~ 344 (851)
|++++|+.++++.+.
T Consensus 162 g~~~eA~~~l~~~l~ 176 (355)
T cd05804 162 GRFKEGIAFMESWRD 176 (355)
T ss_pred CCHHHHHHHHHhhhh
Confidence 455555544444443
No 91
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=1.4e-09 Score=120.60 Aligned_cols=357 Identities=12% Similarity=0.151 Sum_probs=212.3
Q ss_pred CHHHHHHHHHH--HHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--------
Q 038852 138 TVFTCNAIIAA--MYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPV-------- 207 (851)
Q Consensus 138 ~~~~~~~li~~--~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~-------- 207 (851)
|..+-..+++. |...|+.|.|.+-++.+ .+...|..|+++|.+..++|-|.-.+..|....+.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 45555555543 44678888888887765 24567888999888888888777666555332111
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHH
Q 038852 208 GPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATF 287 (851)
Q Consensus 208 ~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l 287 (851)
.++ .+-..++...+..|.+++|+.+|++..+. ..|-..|-..|.+++|.++-+.--+.. -..+|...
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~y 864 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNY 864 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHH
Confidence 111 22223344456778888888888877653 334456667788888887765422221 23466666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHH-HHHHHcCCCCCCCccCHHHHHHHHHHH
Q 038852 288 MEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALF-EQMLDNHQPPNIQAVNSDTFNIMVNEC 366 (851)
Q Consensus 288 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~-~~m~~~~~~p~~~~~~~~~~~~L~~~~ 366 (851)
..-+...+|.+.|+++|++.-.. .++ +-..+ .++-.+++.| +++. |...|...+..+
T Consensus 865 A~~Lear~Di~~AleyyEK~~~h-------afe-v~rmL---~e~p~~~e~Yv~~~~-----------d~~L~~WWgqYl 922 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVH-------AFE-VFRML---KEYPKQIEQYVRRKR-----------DESLYSWWGQYL 922 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCCh-------HHH-HHHHH---HhChHHHHHHHHhcc-----------chHHHHHHHHHH
Confidence 66677778888888888764322 111 11111 1122222222 2221 456777777777
Q ss_pred HHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 038852 367 FKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERI 446 (851)
Q Consensus 367 ~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~ 446 (851)
...|++|.|+.+|..+.+ |.++++..|-.|+.++|-.+-++- -|......|++.|...|++
T Consensus 923 ES~GemdaAl~~Y~~A~D-------------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v 983 (1416)
T KOG3617|consen 923 ESVGEMDAALSFYSSAKD-------------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDV 983 (1416)
T ss_pred hcccchHHHHHHHHHhhh-------------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHH
Confidence 888888999888887732 777888888888888888876653 2666677788888888888
Q ss_pred HHHHHHHHHHHHcC--Ccc--chhHHHHHHHHHHH--cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 038852 447 DDALELFNRMVESG--LRV--VVSFGTKVFNELIT--KGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSK 520 (851)
Q Consensus 447 ~~A~~~~~~m~~~~--~~~--~~~~~~~L~~~~~~--~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~ 520 (851)
.+|+.+|.++.... ++. ...+-..|++.... ..+.-.|.++|++.-- -+...+..|-++|.+.+|+
T Consensus 984 ~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~--------~~~~AVmLYHkAGm~~kAL 1055 (1416)
T KOG3617|consen 984 VKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGG--------YAHKAVMLYHKAGMIGKAL 1055 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcch--------hhhHHHHHHHhhcchHHHH
Confidence 88888888765321 000 00000112222222 2233334444444321 1222344566666666666
Q ss_pred HHHHH--------HH--HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038852 521 DIVDQ--------MM--KYGVGITPALQDFVRETFGKAGRGEEIERVLNADRW 563 (851)
Q Consensus 521 ~~~~~--------m~--~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~ 563 (851)
++.-+ ++ +.+...|+.+.+-..+.+....++++|..++-..++
T Consensus 1056 elAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1056 ELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred HHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 54211 11 344456777777777777777777777777665543
No 92
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.29 E-value=2.1e-09 Score=103.79 Aligned_cols=199 Identities=17% Similarity=0.089 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHH
Q 038852 317 ATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVA 396 (851)
Q Consensus 317 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~ 396 (851)
.+...|...|...|+...|.+-++++++.+ |+ +..++..++..|.+.|+.+.|.+.|+++....+. +..
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps----~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-----~Gd 104 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD--PS----YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-----NGD 104 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc----cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-----ccc
Confidence 345567788889999999999999998854 33 6788899999999999999999999998887776 556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHH
Q 038852 397 GYNNIIARYCENEMLEEAEKLLREISTKSLSP-DVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNEL 475 (851)
Q Consensus 397 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~ 475 (851)
+.|+....+|..|++++|...|++.+....-+ -..+|..++.|..+.|+.+.|.++|++.++.+......... ++...
T Consensus 105 VLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~-~a~~~ 183 (250)
T COG3063 105 VLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLE-LARLH 183 (250)
T ss_pred hhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHH-HHHHH
Confidence 68888888999999999999999888753222 25688888888899999999999999999887655555443 77888
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038852 476 ITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMK 528 (851)
Q Consensus 476 ~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~ 528 (851)
.+.|++..|.-++++....+. .+...+...|+.-...|+.+.+-++=..+.+
T Consensus 184 ~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 184 YKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 888888888888888877765 6777777777877888887777766555554
No 93
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.29 E-value=1e-08 Score=127.92 Aligned_cols=348 Identities=16% Similarity=0.044 Sum_probs=226.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc--------cchhhHHHHHHH
Q 038852 219 KGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLV--------YDGVVNATFMEW 290 (851)
Q Consensus 219 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~--------~d~~~~~~li~~ 290 (851)
..+...|+++.+..+++.+.......+.......+..+...|++++|..++..+...-.. ........+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 345556777777777765422111113333445666777889999999999887643111 112233344556
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHH
Q 038852 291 WFNQGKDKEAMQSYKSLMERNFRMTP----ATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNEC 366 (851)
Q Consensus 291 ~~~~g~~~~A~~l~~~~~~~~~~~~~----~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~ 366 (851)
+...|++++|..+++..++.....+. ..++.+..++...|++++|..++++++..............++..++.++
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 77899999999999998874222221 34566777888999999999999998753221110000123556778889
Q ss_pred HHcCChHHHHHHHHHhccCCCCCCC---ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHH
Q 038852 367 FKHGKFSEAIETFKKAGTHPKSKPF---AMDVAGYNNIIARYCENEMLEEAEKLLREISTKS--LSP--DVTTFRTLIDA 439 (851)
Q Consensus 367 ~~~g~~~~A~~~~~~~~~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p--d~~~~~~Ll~~ 439 (851)
...|++++|..+++++.......+. ......+..+...+...|++++|...+.+..... ..+ ....+..++..
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 9999999999999887543222111 1123345566777888899999999998876531 111 23345567778
Q ss_pred HHHcCCHHHHHHHHHHHHHcCC--ccchhHH----HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHH
Q 038852 440 YLKVERIDDALELFNRMVESGL--RVVVSFG----TKVFNELITKGKVAECAPILTKMGEKDPKPDF---LIYDVVVRGL 510 (851)
Q Consensus 440 ~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~----~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~---~~~~~ll~a~ 510 (851)
+...|++++|.+.++++..... .....+. ...+..+...|+.+.|..++............ ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 8899999999999999865311 1111110 11224455689999999998876653222111 1245677788
Q ss_pred HhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhhhhcCC
Q 038852 511 CNEGLFDMSKDIVDQMMKY----GVGI-TPALQDFVRETFGKAGRGEEIERVLNADRWGYA 566 (851)
Q Consensus 511 ~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~~~ 566 (851)
...|++++|..++++++.. +... .......++.++.+.|+.++|.+.+.+......
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 8999999999999998753 2222 123455688899999999999999999887553
No 94
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.28 E-value=5.7e-09 Score=114.25 Aligned_cols=291 Identities=14% Similarity=0.153 Sum_probs=186.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH-------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------
Q 038852 216 HLTKGFVDAGRIGEAVDLLRDMLSRQLGADS-------------LVYNNLISGFLNLGNLEKANELFDELKQR------- 275 (851)
Q Consensus 216 ~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------------~~~~~Li~~~~~~g~~~~A~~~~~~~~~~------- 275 (851)
..|..|++.|...+|......-.+. ..|. ..|...++.|.+..++++|+++|++--..
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~l--~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaiela 697 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEEL--LADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELA 697 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHHh--hccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHH
Confidence 3566788888877766543211110 1122 34445555566666667777666542111
Q ss_pred --CCccc-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCC
Q 038852 276 --CLVYD-GVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQ 352 (851)
Q Consensus 276 --~~~~d-~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ 352 (851)
.+... +..-.....-+...|.++.|+..|-++. .....+.+....+.+.+|+.+++.+.+....
T Consensus 698 rfafp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk~~---- 764 (1636)
T KOG3616|consen 698 RFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQKTA---- 764 (1636)
T ss_pred HhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhccc----
Confidence 01001 1111223334455566666666554432 2233456667788999999999988776543
Q ss_pred ccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 038852 353 AVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTT 432 (851)
Q Consensus 353 ~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~ 432 (851)
...|-.++..|...|+++.|.++|.+.. . ++..|.+|.+.|+++.|.++-++.. |.+.....
T Consensus 765 ---s~yy~~iadhyan~~dfe~ae~lf~e~~-----------~--~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~ 826 (1636)
T KOG3616|consen 765 ---SGYYGEIADHYANKGDFEIAEELFTEAD-----------L--FKDAIDMYGKAGKWEDAFKLAEECH--GPEATISL 826 (1636)
T ss_pred ---cccchHHHHHhccchhHHHHHHHHHhcc-----------h--hHHHHHHHhccccHHHHHHHHHHhc--CchhHHHH
Confidence 3467888999999999999999998762 2 6778899999999999999987765 44445667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 038852 433 FRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCN 512 (851)
Q Consensus 433 ~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~ 512 (851)
|.+-..-+-+.|++.+|..+|-.+-+-+ ..+.+|-+.|..++.+++.++-.-.. -..|-..+..-|..
T Consensus 827 yiakaedldehgkf~eaeqlyiti~~p~---------~aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~ 894 (1636)
T KOG3616|consen 827 YIAKAEDLDEHGKFAEAEQLYITIGEPD---------KAIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEA 894 (1636)
T ss_pred HHHhHHhHHhhcchhhhhheeEEccCch---------HHHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHh
Confidence 7777777888999999988875543321 25677888899888888887653321 22355556667777
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 038852 513 EGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNA 560 (851)
Q Consensus 513 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~ 560 (851)
.|++..|.+.|-++-+ +...+++|...+.|++|.++-+.
T Consensus 895 ~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 895 EGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred ccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhc
Confidence 7888888777755433 34455666666666666665543
No 95
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.27 E-value=1.8e-08 Score=125.79 Aligned_cols=313 Identities=12% Similarity=0.063 Sum_probs=142.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCC-----C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH----HHH
Q 038852 181 LINTYCDEGKVDEGMNVFRRIIETAPVG-----P--SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADS----LVY 249 (851)
Q Consensus 181 Li~~~~~~g~~~~A~~l~~~~~~~~~~~-----p--~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~~ 249 (851)
....+...|++++|..+++.+.+..... + .......+...+...|++++|..+++++++.....+. ..+
T Consensus 415 ~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~ 494 (903)
T PRK04841 415 QAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVAT 494 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 3344455566666666666554321110 0 1112222334445566666666666666542111111 233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCc-----cchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh----cCC---CCHH
Q 038852 250 NNLISGFLNLGNLEKANELFDELKQRCLV-----YDGVVNATFMEWWFNQGKDKEAMQSYKSLMER----NFR---MTPA 317 (851)
Q Consensus 250 ~~Li~~~~~~g~~~~A~~~~~~~~~~~~~-----~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~----~~~---~~~~ 317 (851)
+.++.++...|++++|...++++...... .....+..+..++...|++++|...+++.+.. +.. ....
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 574 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEF 574 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 44555556666666666666665532111 11223344455566666666666666655442 110 0112
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHH
Q 038852 318 TCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAG 397 (851)
Q Consensus 318 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~ 397 (851)
.+..+..++...|++++|...+++++....... .......+..++.++...|++++|.+.++.+...............
T Consensus 575 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 575 LLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ-PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 233444555556666666666666544211000 0001233444555666666666666666655332111110000000
Q ss_pred H--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCcc-chhH
Q 038852 398 Y--NNIIARYCENEMLEEAEKLLREISTKSLSPD---VTTFRTLIDAYLKVERIDDALELFNRMVES----GLRV-VVSF 467 (851)
Q Consensus 398 ~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~ 467 (851)
. ...+..+...|+.+.|..++........... ...+..+..++...|++++|..+|+++.+. +... ....
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~ 733 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRN 733 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 0 0111233345666666666555432111111 011234555556666666666666665542 1111 1122
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 038852 468 GTKVFNELITKGKVAECAPILTKMGEK 494 (851)
Q Consensus 468 ~~~L~~~~~~~g~~~~A~~ll~~m~~~ 494 (851)
...+..+|...|+.++|.+.+.++++.
T Consensus 734 ~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 734 LILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 333445555666666666666665543
No 96
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=6.2e-09 Score=103.39 Aligned_cols=286 Identities=16% Similarity=0.148 Sum_probs=176.5
Q ss_pred CCccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHHcCChhHHHHHHHHHHHcCCCCCCH--HHHH
Q 038852 103 PRLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCN-AIIAAMYRAKRYDDAVALFKYFFDQADIVPNI--VSYN 179 (851)
Q Consensus 103 ~~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~--~~~~ 179 (851)
.+..+..+...|....++..|...++.+-... |...-|. .-...+++.+.+.+|+++...|.+. ++. .+..
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~----~~L~~~~lq 116 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLYKACIYADALRVAFLLLDN----PALHSRVLQ 116 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC----HHHHHHHHH
Confidence 34567778889999999999999999976543 3333332 2355677899999999999988442 121 1122
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038852 180 NLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL 259 (851)
Q Consensus 180 ~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~ 259 (851)
.-..+....+|+..+..+++.....+ +..+.+..+....+.|++++|++-|..+.+.+---....|+ +.-+..+.
T Consensus 117 LqaAIkYse~Dl~g~rsLveQlp~en----~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYn-iALaHy~~ 191 (459)
T KOG4340|consen 117 LQAAIKYSEGDLPGSRSLVEQLPSEN----EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYN-LALAHYSS 191 (459)
T ss_pred HHHHHhcccccCcchHHHHHhccCCC----ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHH-HHHHHHhh
Confidence 22233456788888988888775333 56678888888889999999999999999875443556665 55566677
Q ss_pred CCHHHHHHHHHHHHhcCCccchhhHH----HHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHH
Q 038852 260 GNLEKANELFDELKQRCLVYDGVVNA----TFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEA 335 (851)
Q Consensus 260 g~~~~A~~~~~~~~~~~~~~d~~~~~----~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A 335 (851)
|+++.|++...+++++|+.-....-. ..+++- ..|+ .+.+....+ +..+|.-...+.+.++++.|
T Consensus 192 ~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgN---t~~lh~Sal-------~eAfNLKaAIeyq~~n~eAA 260 (459)
T KOG4340|consen 192 RQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGN---TLVLHQSAL-------VEAFNLKAAIEYQLRNYEAA 260 (459)
T ss_pred hhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccc---hHHHHHHHH-------HHHhhhhhhhhhhcccHHHH
Confidence 99999999999999998772221110 000000 0000 011111110 13445455556677777777
Q ss_pred HHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHH
Q 038852 336 QALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAE 415 (851)
Q Consensus 336 ~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~ 415 (851)
.+.+-.|--+. ....|.+|..+++..-. .+++.+..+-+.-++...+. -..+|..++-.||++.-++.|-
T Consensus 261 ~eaLtDmPPRa----E~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPf-----P~ETFANlLllyCKNeyf~lAA 330 (459)
T KOG4340|consen 261 QEALTDMPPRA----EEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPF-----PPETFANLLLLYCKNEYFDLAA 330 (459)
T ss_pred HHHhhcCCCcc----cccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCC-----ChHHHHHHHHHHhhhHHHhHHH
Confidence 77766653221 12225666666554332 23344444444444333232 4566777777888887777777
Q ss_pred HHHHH
Q 038852 416 KLLRE 420 (851)
Q Consensus 416 ~l~~~ 420 (851)
+++.+
T Consensus 331 DvLAE 335 (459)
T KOG4340|consen 331 DVLAE 335 (459)
T ss_pred HHHhh
Confidence 77654
No 97
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.25 E-value=2.3e-09 Score=103.53 Aligned_cols=206 Identities=11% Similarity=0.027 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038852 356 SDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRT 435 (851)
Q Consensus 356 ~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~ 435 (851)
..+...|+..|...|++..|.+-++++++.+++ +..+|..+...|.+.|+.+.|.+.|++.++.... +..+.|.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-----~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNN 108 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPS-----YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNN 108 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-----cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhh
Confidence 346778899999999999999999999998877 8899999999999999999999999999976432 5778999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-ccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 038852 436 LIDAYLKVERIDDALELFNRMVESGL-RVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEG 514 (851)
Q Consensus 436 Ll~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g 514 (851)
.+..+|..|++++|...|++++..-. .....++..++.|..+.|+++.|.++|++.++.+.. ...+...+.+...+.|
T Consensus 109 YG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~ 187 (250)
T COG3063 109 YGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAG 187 (250)
T ss_pred hhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcc
Confidence 99999999999999999999997522 123344455888889999999999999999998655 4556777889999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCC
Q 038852 515 LFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAAPV 569 (851)
Q Consensus 515 ~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~~~~~p 569 (851)
++..|..++++....+. .+.+.....+++-.+.|+-+.|.++=..+...||...
T Consensus 188 ~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 188 DYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred cchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 99999999999987665 8888888899999999999999999888888887543
No 98
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.25 E-value=8e-09 Score=113.11 Aligned_cols=57 Identities=11% Similarity=-0.027 Sum_probs=34.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCC
Q 038852 508 RGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAA 567 (851)
Q Consensus 508 ~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~~~~ 567 (851)
+-.+..+-++-|.++-+...+.. ...+...++..+...|++++|.+.|-+..+....
T Consensus 971 d~a~d~~afd~afdlari~~k~k---~~~vhlk~a~~ledegk~edaskhyveaiklnty 1027 (1636)
T KOG3616|consen 971 DFAADNCAFDFAFDLARIAAKDK---MGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTY 1027 (1636)
T ss_pred hhhhcccchhhHHHHHHHhhhcc---CccchhHHhhhhhhccchhhhhHhhHHHhhcccc
Confidence 33445555666666555544432 2333344666778889999998887777665443
No 99
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.25 E-value=6.5e-07 Score=101.81 Aligned_cols=228 Identities=18% Similarity=0.198 Sum_probs=132.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 038852 110 RVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAA--MYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCD 187 (851)
Q Consensus 110 ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~ 187 (851)
-|...+..+++..|.....++++.. |+. .|..++.+ +.+.|+.++|..+++.. ...+. .|..|...+-.+|.+
T Consensus 15 pi~d~ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~-~~~~~-~D~~tLq~l~~~y~d 89 (932)
T KOG2053|consen 15 PIYDLLDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEAL-YGLKG-TDDLTLQFLQNVYRD 89 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhh-ccCCC-CchHHHHHHHHHHHH
Confidence 3555677788888888888877654 332 23333333 35788888988888765 32222 277788888888888
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-C------
Q 038852 188 EGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL-G------ 260 (851)
Q Consensus 188 ~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~-g------ 260 (851)
.|.+++|..+|+++.... |+......+..+|++.+++.+-.++--++.+.-.+ +...+=+++..+... .
T Consensus 90 ~~~~d~~~~~Ye~~~~~~---P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~ 165 (932)
T KOG2053|consen 90 LGKLDEAVHLYERANQKY---PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENELL 165 (932)
T ss_pred HhhhhHHHHHHHHHHhhC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccc
Confidence 899999999998887754 45667777778888888776544443333332222 333333344333321 1
Q ss_pred ---CHHHHHHHHHHHHhcC-CccchhhHHHHHHHHHHcCCHHHHHHHHH-HHHHhcCCCCHHHHHHHHHHHHhCCCHHHH
Q 038852 261 ---NLEKANELFDELKQRC-LVYDGVVNATFMEWWFNQGKDKEAMQSYK-SLMERNFRMTPATCNTLLEVLLKHEKKEEA 335 (851)
Q Consensus 261 ---~~~~A~~~~~~~~~~~-~~~d~~~~~~li~~~~~~g~~~~A~~l~~-~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A 335 (851)
-+.-|.+.++.+++.+ ..-...-.......+...|++++|++++. ...+.-...+...-+.-+..+...+++.+.
T Consensus 166 ~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l 245 (932)
T KOG2053|consen 166 DPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQEL 245 (932)
T ss_pred cchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHH
Confidence 1233455555555543 22122222333344556677777777773 333433333444444555555566666666
Q ss_pred HHHHHHHHHcC
Q 038852 336 QALFEQMLDNH 346 (851)
Q Consensus 336 ~~l~~~m~~~~ 346 (851)
.++..+++.++
T Consensus 246 ~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 246 FELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHhC
Confidence 66655555544
No 100
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.25 E-value=3.8e-07 Score=98.05 Aligned_cols=412 Identities=8% Similarity=0.022 Sum_probs=240.0
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHH
Q 038852 136 RPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYR 215 (851)
Q Consensus 136 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~ 215 (851)
+.|+.+|+.||.-+... .++++.+.++.++.... -....|..-|....+..+++..+++|.+++... .+.+.|.
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP--~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv---LnlDLW~ 90 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFP--SSPRAWKLYIERELASKDFESVEKLFSRCLVKV---LNLDLWK 90 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCC--CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---hhHhHHH
Confidence 56889999999866544 89999999999876433 345678888999999999999999999998753 3677787
Q ss_pred HHHHHHHH-cCCHH----HHHHHHHHHHh-cCCCC-CHHHHHHHHHHH---------HhcCCHHHHHHHHHHHHhcCCcc
Q 038852 216 HLTKGFVD-AGRIG----EAVDLLRDMLS-RQLGA-DSLVYNNLISGF---------LNLGNLEKANELFDELKQRCLVY 279 (851)
Q Consensus 216 ~Li~~~~~-~g~~~----~A~~l~~~m~~-~g~~p-d~~~~~~Li~~~---------~~~g~~~~A~~~~~~~~~~~~~~ 279 (851)
..+..-.+ .++.. .....|+-++. .|.++ ....|+..+..+ ....+++..+++|.+++..-+.-
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~n 170 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHN 170 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcccc
Confidence 77765444 23322 22333443333 33221 223455444433 23335667778888876542221
Q ss_pred chhhHHHH------HHH-------HHHcCCHHHHHHHHHHHHH--hcCCCCH---------------HHHHHHHHHHHhC
Q 038852 280 DGVVNATF------MEW-------WFNQGKDKEAMQSYKSLME--RNFRMTP---------------ATCNTLLEVLLKH 329 (851)
Q Consensus 280 d~~~~~~l------i~~-------~~~~g~~~~A~~l~~~~~~--~~~~~~~---------------~~~~~Li~~~~~~ 329 (851)
=..+|+.. ++. --+..++..|..+++++.. +|...+. ..|..+|..-..+
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksN 250 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Confidence 11122211 111 1123456677777776653 2221111 1244444432211
Q ss_pred CC--------HHHHHHHHHHHHH-cCCCCCCCccCHHHHHHHHH-------HHHHcCC-------hHHHHHHHHHhccCC
Q 038852 330 EK--------KEEAQALFEQMLD-NHQPPNIQAVNSDTFNIMVN-------ECFKHGK-------FSEAIETFKKAGTHP 386 (851)
Q Consensus 330 g~--------~~~A~~l~~~m~~-~~~~p~~~~~~~~~~~~L~~-------~~~~~g~-------~~~A~~~~~~~~~~~ 386 (851)
+- .....-+|+..+. .+. ...+|..... .+...|+ .+++..++++.++..
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~-------~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l 323 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGY-------HPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGL 323 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhc-------CHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 11 0122223333322 122 2333333222 3333343 456666666654321
Q ss_pred CCCCCccCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Q 038852 387 KSKPFAMDVAGYNNIIARYCENE---MLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRV 463 (851)
Q Consensus 387 ~~~~~~~d~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~ 463 (851)
.. .+...|..+...-...- ..+....++++++..-..--..+|..+++.-.+..-++.|..+|.++.+.+...
T Consensus 324 ~~----~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~ 399 (656)
T KOG1914|consen 324 LK----ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTR 399 (656)
T ss_pred HH----HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCc
Confidence 11 03333333332211111 255566666666654222123467778888888888899999999998877655
Q ss_pred -chhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHH
Q 038852 464 -VVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGI--TPALQDF 540 (851)
Q Consensus 464 -~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~ 540 (851)
.+.++.+++ -|...+|.+-|.++|+--+++- .-+...-...++-+.+.++-..|+.+|++++..++.+ ...+|..
T Consensus 400 hhVfVa~A~m-Ey~cskD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r 477 (656)
T KOG1914|consen 400 HHVFVAAALM-EYYCSKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDR 477 (656)
T ss_pred chhhHHHHHH-HHHhcCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHH
Confidence 444444444 4556788899999998866652 2234444567777888888899999999998774443 4577888
Q ss_pred HHHHHHhcCCHHHHHHHHHhhhhcCC
Q 038852 541 VRETFGKAGRGEEIERVLNADRWGYA 566 (851)
Q Consensus 541 L~~~~~~~G~~~eA~~ll~~~~~~~~ 566 (851)
+++.-..-|+++.++++-+++...|+
T Consensus 478 ~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 478 MLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 88888999999999988888877777
No 101
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.17 E-value=4.9e-08 Score=110.11 Aligned_cols=301 Identities=10% Similarity=0.035 Sum_probs=164.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 038852 243 GADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTL 322 (851)
Q Consensus 243 ~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~L 322 (851)
.++..+|..++++-...|+.+.|..++.+|+++|+..+...|..|+.+ .++..-++.+++.|.+.|+.|+..|+...
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 468888999999999999999999999999999988777766666544 77888888888888888888888887766
Q ss_pred HHHHHhCCCHHHHH-----------HHHHHHHH-------------------------cCCCCCCCccCHHHHHHHHHHH
Q 038852 323 LEVLLKHEKKEEAQ-----------ALFEQMLD-------------------------NHQPPNIQAVNSDTFNIMVNEC 366 (851)
Q Consensus 323 i~~~~~~g~~~~A~-----------~l~~~m~~-------------------------~~~~p~~~~~~~~~~~~L~~~~ 366 (851)
+..+.++|....+. .++..|.. .|+.- .. +...++.-.
T Consensus 278 vip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~-----~~-aiws~c~~l 351 (1088)
T KOG4318|consen 278 VIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDI-----LE-AIWSMCEKL 351 (1088)
T ss_pred HHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhcccc-----ch-HHHHHHHHH
Confidence 66555543322111 11111111 11110 11 112222222
Q ss_pred HHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCC----------------------HHHHHHHHHHHHhC
Q 038852 367 FKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEM----------------------LEEAEKLLREISTK 424 (851)
Q Consensus 367 ~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~----------------------~~~A~~l~~~m~~~ 424 (851)
...|+-++.+.+...+..- ......-++..|..++.-|.+.-+ ..+..+++...
T Consensus 352 ~hQgk~e~veqlvg~l~np-t~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l--- 427 (1088)
T KOG4318|consen 352 RHQGKGEEVEQLVGQLLNP-TLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL--- 427 (1088)
T ss_pred HHcCCCchHHHHHhhhcCC-ccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh---
Confidence 3356655555555544221 000011133444444444333111 11111111111
Q ss_pred CCCCCHH----------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHH
Q 038852 425 SLSPDVT----------------------------TFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELI 476 (851)
Q Consensus 425 g~~pd~~----------------------------~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~ 476 (851)
.+|.. .-+.++..|+..-+..+++..-++....- ....|..|++.+.
T Consensus 428 --rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~l---f~g~ya~Li~l~~ 502 (1088)
T KOG4318|consen 428 --RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLL---FAGLYALLIKLMD 502 (1088)
T ss_pred --CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHhhhHH
Confidence 11111 11333444444444444443333332211 2245666777788
Q ss_pred HcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCCH
Q 038852 477 TKGKVAECAPILTKMGEKD--PKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPA---LQDFVRETFGKAGRG 551 (851)
Q Consensus 477 ~~g~~~~A~~ll~~m~~~~--~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~---~~~~L~~~~~~~G~~ 551 (851)
...+.+.|..+.++....+ +..|...+..+.+.+.+.+...++..++.++.+.- ...+. ..--+.+....+|+.
T Consensus 503 ~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a-~n~~~~a~~~f~~lns~a~agqq 581 (1088)
T KOG4318|consen 503 LHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSA-ENEPLVAIILFPLLNSGAPAGQQ 581 (1088)
T ss_pred HHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHh-hCCchHHHHHHHHHhhhhhccCH
Confidence 8888888888888776542 33455567778888888888888888888887622 12221 112245555566766
Q ss_pred HHHHHHHHhhh
Q 038852 552 EEIERVLNADR 562 (851)
Q Consensus 552 ~eA~~ll~~~~ 562 (851)
+.-.++++-+.
T Consensus 582 e~Lkkl~d~lv 592 (1088)
T KOG4318|consen 582 EKLKKLADILV 592 (1088)
T ss_pred HHHHHHHHHHH
Confidence 66666665544
No 102
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.17 E-value=2.4e-06 Score=92.04 Aligned_cols=438 Identities=12% Similarity=0.099 Sum_probs=270.0
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT 184 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~ 184 (851)
.+++.+|+.+-.. .++++++.+++++.. ..-....|...|....+.++|+...++|.+.+.+. -+...|...+.-
T Consensus 21 ~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv---LnlDLW~lYl~Y 95 (656)
T KOG1914|consen 21 DSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV---LNLDLWKLYLSY 95 (656)
T ss_pred HHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---hhHhHHHHHHHH
Confidence 3556666665555 999999999998843 23456789999999999999999999999987642 367778777763
Q ss_pred HHH-cCChH----HHHHHHHHHHHhCCCCC-CHHHHHHHHHHH---------HHcCCHHHHHHHHHHHHhcCCCCCH-HH
Q 038852 185 YCD-EGKVD----EGMNVFRRIIETAPVGP-SSNTYRHLTKGF---------VDAGRIGEAVDLLRDMLSRQLGADS-LV 248 (851)
Q Consensus 185 ~~~-~g~~~----~A~~l~~~~~~~~~~~p-~~~~~~~Li~~~---------~~~g~~~~A~~l~~~m~~~g~~pd~-~~ 248 (851)
-.+ .|+.. .-...|+-+++..+..+ +...|+..+..+ ....+++...++|.+++..-+. +. ..
T Consensus 96 VR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~-nlEkL 174 (656)
T KOG1914|consen 96 VRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH-NLEKL 174 (656)
T ss_pred HHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc-cHHHH
Confidence 332 23332 33455666666655422 223455555433 2334567778888888764332 22 22
Q ss_pred H------HHHHHHH-------HhcCCHHHHHHHHHHHHh--cCCccch---------------hhHHHHHHHHHHcCCH-
Q 038852 249 Y------NNLISGF-------LNLGNLEKANELFDELKQ--RCLVYDG---------------VVNATFMEWWFNQGKD- 297 (851)
Q Consensus 249 ~------~~Li~~~-------~~~g~~~~A~~~~~~~~~--~~~~~d~---------------~~~~~li~~~~~~g~~- 297 (851)
| ..-|+.. -+..++-.|+++++++.. +|..... ..|..+|..-..++--
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 2 2212111 123356777777777653 2322111 1244444432222211
Q ss_pred -------HHHHHHHHHHHH-hcCCCCHHHHHHH-------HHHHHhCCC-------HHHHHHHHHHHHHcCCCCCCCccC
Q 038852 298 -------KEAMQSYKSLME-RNFRMTPATCNTL-------LEVLLKHEK-------KEEAQALFEQMLDNHQPPNIQAVN 355 (851)
Q Consensus 298 -------~~A~~l~~~~~~-~~~~~~~~~~~~L-------i~~~~~~g~-------~~~A~~l~~~m~~~~~~p~~~~~~ 355 (851)
....-+|+..+. .+..+ .+|.-. ...+.+.|+ .+++.+++++.++.-..- +
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~l~~~p--eiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~-----~ 327 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLYLGYHP--EIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE-----N 327 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH-----H
Confidence 112222333222 12222 222222 223333333 567778888776632221 3
Q ss_pred HHHHHHHHHHHHHcC---ChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHH
Q 038852 356 SDTFNIMVNECFKHG---KFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSP-DVT 431 (851)
Q Consensus 356 ~~~~~~L~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~ 431 (851)
..+|..+...-...- ..+...+++++++...... -..+|..++....+..-++.|..+|.++.+.+..+ ++.
T Consensus 328 ~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~----~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVf 403 (656)
T KOG1914|consen 328 KLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDID----LTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVF 403 (656)
T ss_pred HHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccC----CceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhh
Confidence 445555544332222 2566667777775543322 23458888888888889999999999999887666 677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHH
Q 038852 432 TFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPD--FLIYDVVVRG 509 (851)
Q Consensus 432 ~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd--~~~~~~ll~a 509 (851)
++++++..|| .++.+.|.++|+--++.- ..+..+....++.+...++-..|..+|++.+..++.+| ..+|..++.-
T Consensus 404 Va~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 404 VAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEY 481 (656)
T ss_pred HHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHH
Confidence 8888887765 578999999999887753 33445555678888999999999999999999855544 4689999999
Q ss_pred HHhcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 038852 510 LCNEGLFDMSKDIVDQMMKYG---VGITPALQDFVRETFGKAGRGEEIERVLNAD 561 (851)
Q Consensus 510 ~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~ 561 (851)
-.+.|++..++++-+++...- ..........+++.|.-.+.+..-..-++.+
T Consensus 482 ES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 482 ESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 999999999999988876421 2222234455677777666655544444444
No 103
>PLN02789 farnesyltranstransferase
Probab=99.16 E-value=2.1e-08 Score=107.08 Aligned_cols=216 Identities=12% Similarity=0.083 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038852 140 FTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEG-KVDEGMNVFRRIIETAPVGPSSNTYRHLT 218 (851)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g-~~~~A~~l~~~~~~~~~~~p~~~~~~~Li 218 (851)
.++..+-.++...++.++|+.++++++...+ -+..+|+....++...| ++++++++++++++.++. +..+|+...
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP--~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk--nyqaW~~R~ 113 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNP--GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK--NYQIWHHRR 113 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCc--hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc--chHHhHHHH
Confidence 3444444445556666677777776665432 23345555555556665 456666666666666554 555566555
Q ss_pred HHHHHcCCH--HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCC
Q 038852 219 KGFVDAGRI--GEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGK 296 (851)
Q Consensus 219 ~~~~~~g~~--~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~ 296 (851)
.++.+.|+. ++++++++++++.+.+ |..+|+....++...|+++++++.++++++.++. +..+|+.
T Consensus 114 ~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~---------- 181 (320)
T PLN02789 114 WLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQ---------- 181 (320)
T ss_pred HHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHH----------
Confidence 555555542 4556666666666555 5666666666666666666666666666665544 3333333
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC---CC----HHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHc
Q 038852 297 DKEAMQSYKSLMERNFRMTPATCNTLLEVLLKH---EK----KEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKH 369 (851)
Q Consensus 297 ~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~---g~----~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~ 369 (851)
...++.+. |. .++++++..+++.. .|+ |..+|+.+..++...
T Consensus 182 -------------------------R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--~P~----N~SaW~Yl~~ll~~~ 230 (320)
T PLN02789 182 -------------------------RYFVITRSPLLGGLEAMRDSELKYTIDAILA--NPR----NESPWRYLRGLFKDD 230 (320)
T ss_pred -------------------------HHHHHHhccccccccccHHHHHHHHHHHHHh--CCC----CcCHHHHHHHHHhcC
Confidence 33333222 11 24566666666663 333 666777777777662
Q ss_pred ----CChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHh
Q 038852 370 ----GKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCE 407 (851)
Q Consensus 370 ----g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~ 407 (851)
++..+|.+++.++...... +......|++.|+.
T Consensus 231 ~~~l~~~~~~~~~~~~~~~~~~~-----s~~al~~l~d~~~~ 267 (320)
T PLN02789 231 KEALVSDPEVSSVCLEVLSKDSN-----HVFALSDLLDLLCE 267 (320)
T ss_pred CcccccchhHHHHHHHhhcccCC-----cHHHHHHHHHHHHh
Confidence 3345566666665443222 45556666666654
No 104
>PLN02789 farnesyltranstransferase
Probab=99.15 E-value=3.1e-08 Score=105.74 Aligned_cols=144 Identities=7% Similarity=0.036 Sum_probs=117.6
Q ss_pred HHHHHH-HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 038852 110 RVQSLI-RAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAK-RYDDAVALFKYFFDQADIVPNIVSYNNLINTYCD 187 (851)
Q Consensus 110 ll~~l~-~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~ 187 (851)
.+++++ ..++.++|+.+.++++... .-+..+|+....++.+.| ++++++.++++++.... .+..+|+....++.+
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np--knyqaW~~R~~~l~~ 118 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP--KNYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC--cchHHhHHHHHHHHH
Confidence 344444 4578999999999999765 335567888877888887 68999999999987643 456678888777778
Q ss_pred cCCh--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038852 188 EGKV--DEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL 259 (851)
Q Consensus 188 ~g~~--~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~ 259 (851)
.|+. ++++++++++++.++. |..+|+....++...|+++++++.++++++.++. |..+|+....++.+.
T Consensus 119 l~~~~~~~el~~~~kal~~dpk--Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLDAK--NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRS 189 (320)
T ss_pred cCchhhHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhc
Confidence 8864 7889999999999876 8999999999999999999999999999999877 888898887776655
No 105
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=3.5e-07 Score=104.07 Aligned_cols=272 Identities=14% Similarity=0.127 Sum_probs=156.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 038852 110 RVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEG 189 (851)
Q Consensus 110 ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g 189 (851)
++...+..+-+++|..+|++. ..+..+.+.||. .-+.++.|.++-++. .....|..|+.+-...|
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~-------n~p~vWsqlakAQL~~~ 1118 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERC-------NEPAVWSQLAKAQLQGG 1118 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhh-------CChHHHHHHHHHHHhcC
Confidence 334444455555555555542 233444444443 235555555555544 13345666666666667
Q ss_pred ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038852 190 KVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELF 269 (851)
Q Consensus 190 ~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~ 269 (851)
.+.+|++-|-++ . |...|..++....+.|.+++-++++..+.+..-+|... +.|+-+|++.+++.+.++++
T Consensus 1119 ~v~dAieSyika-----d--Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1119 LVKDAIESYIKA-----D--DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred chHHHHHHHHhc-----C--CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh
Confidence 666666666443 2 44466667777777777777776666665554443333 35666666666666554443
Q ss_pred HHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 038852 270 DELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPP 349 (851)
Q Consensus 270 ~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p 349 (851)
. .++..-...+++-|...|.++.|.-+|..+ ..|..|...+...|++..|.+.-+++-
T Consensus 1190 ~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAn------ 1247 (1666)
T KOG0985|consen 1190 A-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKAN------ 1247 (1666)
T ss_pred c-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhcc------
Confidence 1 234445555666666666666666666543 456667777777777777777665542
Q ss_pred CCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C
Q 038852 350 NIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLS-P 428 (851)
Q Consensus 350 ~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p 428 (851)
+..+|..+..+|...+.+..|.-+=-. +.....-...|+..|-..|-+++.+.+++..+ |++ .
T Consensus 1248 -----s~ktWK~VcfaCvd~~EFrlAQiCGL~---------iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERA 1311 (1666)
T KOG0985|consen 1248 -----STKTWKEVCFACVDKEEFRLAQICGLN---------IIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERA 1311 (1666)
T ss_pred -----chhHHHHHHHHHhchhhhhHHHhcCce---------EEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHH
Confidence 455777777777766666554322111 11133345667777777888888877777665 322 1
Q ss_pred CHHHHHHHHHHHHHc
Q 038852 429 DVTTFRTLIDAYLKV 443 (851)
Q Consensus 429 d~~~~~~Ll~~~~~~ 443 (851)
....|+.|+-.|.+-
T Consensus 1312 HMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1312 HMGMFTELAILYSKY 1326 (1666)
T ss_pred HHHHHHHHHHHHHhc
Confidence 234566666666554
No 106
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=3.2e-07 Score=104.32 Aligned_cols=321 Identities=14% Similarity=0.173 Sum_probs=188.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038852 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAP-VGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNL 252 (851)
Q Consensus 174 d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~-~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~L 252 (851)
|.......+.++...+-..+-+++++++.-.+. +.-+...-|.|+-..++. +..+..++.+++-..+.. .+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~-------~i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAP-------DI 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCch-------hH
Confidence 444455566777777777888888888754332 222233344444444443 344555566555443211 24
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCH
Q 038852 253 ISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKK 332 (851)
Q Consensus 253 i~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~ 332 (851)
+..+...+-+++|..+|++... +......|++ ..+..++|.++-+++.+ ..+|..++.+-...|..
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie---~i~~ldRA~efAe~~n~------p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIE---NIGSLDRAYEFAERCNE------PAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHH---HhhhHHHHHHHHHhhCC------hHHHHHHHHHHHhcCch
Confidence 4555666677788877776432 2233333332 34566666666555432 26788888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHH
Q 038852 333 EEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLE 412 (851)
Q Consensus 333 ~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~ 412 (851)
.+|++-|-++- |...|..++....+.|.|++-++++..+..+.. ....=..||-+|++.+++.
T Consensus 1121 ~dAieSyikad-----------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~------E~~id~eLi~AyAkt~rl~ 1183 (1666)
T KOG0985|consen 1121 KDAIESYIKAD-----------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR------EPYIDSELIFAYAKTNRLT 1183 (1666)
T ss_pred HHHHHHHHhcC-----------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc------CccchHHHHHHHHHhchHH
Confidence 88887765442 566788888888888888888888877755422 2222345777888888877
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 038852 413 EAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMG 492 (851)
Q Consensus 413 ~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~ 492 (851)
+.++++. -||......+++-|...|.++.|.-+|..+. -|..|...+...|++..|.+.-+++-
T Consensus 1184 elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1184 ELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred HHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 6655532 3566677778888888888888777776433 34456666777777777776655543
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 038852 493 EKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNA 560 (851)
Q Consensus 493 ~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~ 560 (851)
+..||..+-.+|...+.+..| .|...++....+-...|++.|...|-++|-+.+++.
T Consensus 1248 ------s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1248 ------STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred ------chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 334565555555554443332 122222233333344444444444444444444443
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.09 E-value=4.4e-08 Score=115.08 Aligned_cols=241 Identities=14% Similarity=0.140 Sum_probs=142.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 196 NVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGA-----DSLVYNNLISGFLNLGNLEKANELFD 270 (851)
Q Consensus 196 ~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p-----d~~~~~~Li~~~~~~g~~~~A~~~~~ 270 (851)
+-|++.+..+|. +...|...+......++.++|.+++++++.. +.+ -...|.++++.-...|.-+...++|+
T Consensus 1445 eDferlvrssPN--SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1445 EDFERLVRSSPN--SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred HHHHHHHhcCCC--cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 344555554444 5556666666677777777777777776653 211 11356666666666666666777777
Q ss_pred HHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 038852 271 ELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPN 350 (851)
Q Consensus 271 ~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~ 350 (851)
++.+.+- ...+|..|...|.+.+++++|.++|+.|+++-- -...+|..++..+.+.++-+.|..++.++++.-.+-+
T Consensus 1522 RAcqycd--~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1522 RACQYCD--AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHHHhcc--hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence 7665432 234566666677777777777777777766522 3445677777777777777777777777666322211
Q ss_pred CCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-
Q 038852 351 IQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPD- 429 (851)
Q Consensus 351 ~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd- 429 (851)
........+.+-++.|+.+++..+|+.....++. -...|+.+|+.-.+.|+.+.++++|++++..++.+.
T Consensus 1599 ----Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-----RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1599 ----HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-----RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred ----hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-----chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 3344555555666677777777777766655544 334466777777777777777777777766655443
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHH
Q 038852 430 -VTTFRTLIDAYLKVERIDDALE 451 (851)
Q Consensus 430 -~~~~~~Ll~~~~~~g~~~~A~~ 451 (851)
.+.|...+..-...|+-+.++.
T Consensus 1670 mKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1670 MKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred hHHHHHHHHHHHHhcCchhhHHH
Confidence 2344444444444444443333
No 108
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.09 E-value=3.5e-08 Score=115.84 Aligned_cols=219 Identities=16% Similarity=0.143 Sum_probs=179.5
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 038852 126 LARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN---IVSYNNLINTYCDEGKVDEGMNVFRRII 202 (851)
Q Consensus 126 l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd---~~~~~~Li~~~~~~g~~~~A~~l~~~~~ 202 (851)
-|++.+... +.....|...|......++.++|++++++++..-++.-. ...|.++++....-|.-+...++|+++.
T Consensus 1446 Dferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1446 DFERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 355555443 345678888998899999999999999999886544332 3367788887777888899999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcc-ch
Q 038852 203 ETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVY-DG 281 (851)
Q Consensus 203 ~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~-d~ 281 (851)
+.. . -..+|..|...|.+.+.+++|.++|+.|+++ +.-...+|..++..+.+.++-+.|.+++.++++.-..- ..
T Consensus 1525 qyc-d--~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1525 QYC-D--AYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred Hhc-c--hHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 754 1 3457889999999999999999999999987 44467899999999999999999999999988764432 35
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 038852 282 VVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPN 350 (851)
Q Consensus 282 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~ 350 (851)
.+....+.+-+++|+.+++..+|+..+...++-. ..|+.+++.-.++|+.+.+..+|++++..++.+.
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRt-DlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRT-DLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhCccch-hHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 5667778888999999999999999998775433 6899999999999999999999999999887764
No 109
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.08 E-value=2.1e-08 Score=112.98 Aligned_cols=273 Identities=13% Similarity=0.176 Sum_probs=162.0
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 038852 126 LARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETA 205 (851)
Q Consensus 126 l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~ 205 (851)
++..+...|+.|+.++|..+|..|+..|+.+.|- +|.-| +......+...++.++......++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm-~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFM-EIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhh-hcccccccchhHHHHHhcccccccccCCC----------
Confidence 4555556677888888888888888888887777 66666 33344445666777777777777665543
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCccchhhH
Q 038852 206 PVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQ-RCLVYDGVVN 284 (851)
Q Consensus 206 ~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-~~~~~d~~~~ 284 (851)
.|..++|..|..+|...||+.. |+...+ ....+...+...|.-..-..++..+.- .+..+|..
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~-- 143 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE-- 143 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH--
Confidence 4456688888888888887766 322222 122344445555655555555544321 12222322
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHH
Q 038852 285 ATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLK-HEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMV 363 (851)
Q Consensus 285 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~-~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~ 363 (851)
.++....-.|-++.+++++..+-...... .... +++-+.. ...+++-..+.+...+ .+ +..+|..++
T Consensus 144 -n~illlv~eglwaqllkll~~~Pvsa~~~-p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~-----~s~~l~a~l 211 (1088)
T KOG4318|consen 144 -NAILLLVLEGLWAQLLKLLAKVPVSAWNA-PFQV--FLRQNVVDNTPVEKLLNMCKSLVE---AP-----TSETLHAVL 211 (1088)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhCCcccccc-hHHH--HHHHhccCCchHHHHHHHHHHhhc---CC-----ChHHHHHHH
Confidence 23333445566666666665443221110 1111 1222222 2334444444444333 23 677888888
Q ss_pred HHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 038852 364 NECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKV 443 (851)
Q Consensus 364 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~ 443 (851)
.+-...|+++.|..++.+|.+ +++..+...|..|+.+ .++...++.+++-|.+.|+.|+..|+...+..+.+.
T Consensus 212 ~~alaag~~d~Ak~ll~emke----~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N 284 (1088)
T KOG4318|consen 212 KRALAAGDVDGAKNLLYEMKE----KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSN 284 (1088)
T ss_pred HHHHhcCchhhHHHHHHHHHH----cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcc
Confidence 888888888888888888843 4455555555555544 677777888888888888888888887777766664
Q ss_pred CC
Q 038852 444 ER 445 (851)
Q Consensus 444 g~ 445 (851)
|.
T Consensus 285 ~~ 286 (1088)
T KOG4318|consen 285 GQ 286 (1088)
T ss_pred hh
Confidence 44
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.05 E-value=9.1e-08 Score=106.41 Aligned_cols=215 Identities=14% Similarity=0.158 Sum_probs=162.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 038852 249 YNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLK 328 (851)
Q Consensus 249 ~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~ 328 (851)
-..+...+...|-...|..+|+++. .|..++.+|+..|+..+|.++....+++ ++|...|..++++...
T Consensus 401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence 3457777888888888888888653 4566778888888888888888877773 4566788888887777
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhc
Q 038852 329 HEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCEN 408 (851)
Q Consensus 329 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~ 408 (851)
..-+++|.++++.... .+-..++....+.++++++.+.|+...+..+. -..+|..+..+..+.
T Consensus 470 ~s~yEkawElsn~~sa------------rA~r~~~~~~~~~~~fs~~~~hle~sl~~npl-----q~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISA------------RAQRSLALLILSNKDFSEADKHLERSLEINPL-----QLGTWFGLGCAALQL 532 (777)
T ss_pred hHHHHHHHHHhhhhhH------------HHHHhhccccccchhHHHHHHHHHHHhhcCcc-----chhHHHhccHHHHHH
Confidence 7778888888776533 23334444444578888888888887665544 667788888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHH
Q 038852 409 EMLEEAEKLLREISTKSLSP-DVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPI 487 (851)
Q Consensus 409 g~~~~A~~l~~~m~~~g~~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~l 487 (851)
+++..|.+.|...... .| +...|+.|..+|.+.++..+|...+.++++.+..+...|-| .+....+.|.+++|++.
T Consensus 533 ek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWEN-ymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWEN-YMLVSVDVGEFEDAIKA 609 (777)
T ss_pred hhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeec-hhhhhhhcccHHHHHHH
Confidence 8888888888887754 34 46788889889999988889999999888887666655555 55667788889988888
Q ss_pred HHHHhhC
Q 038852 488 LTKMGEK 494 (851)
Q Consensus 488 l~~m~~~ 494 (851)
+.++.+.
T Consensus 610 ~~rll~~ 616 (777)
T KOG1128|consen 610 YHRLLDL 616 (777)
T ss_pred HHHHHHh
Confidence 8887654
No 111
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.03 E-value=1.4e-05 Score=91.19 Aligned_cols=197 Identities=13% Similarity=0.088 Sum_probs=137.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC
Q 038852 111 VQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGK 190 (851)
Q Consensus 111 l~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~ 190 (851)
+..+.+.|+.++|..+++.....+.. |..+...+-.+|.+.+.+++|..+|+++.... |+......+..+|++.++
T Consensus 50 aLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~---P~eell~~lFmayvR~~~ 125 (932)
T KOG2053|consen 50 ALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKY---PSEELLYHLFMAYVREKS 125 (932)
T ss_pred HHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC---CcHHHHHHHHHHHHHHHH
Confidence 34568899999999888876544433 88899999999999999999999999997654 567777888889999999
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhc
Q 038852 191 VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAG----------RIGEAVDLLRDMLSRQ-LGADSLVYNNLISGFLNL 259 (851)
Q Consensus 191 ~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g----------~~~~A~~l~~~m~~~g-~~pd~~~~~~Li~~~~~~ 259 (851)
+.+-.++--++-+.-|. +...+=.++..+...- -..-|.+.++.+++.+ ..-+..-.......+...
T Consensus 126 yk~qQkaa~~LyK~~pk--~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~ 203 (932)
T KOG2053|consen 126 YKKQQKAALQLYKNFPK--RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQ 203 (932)
T ss_pred HHHHHHHHHHHHHhCCc--ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhc
Confidence 87655554444444333 4444444444444321 1345666777777665 211222233334455677
Q ss_pred CCHHHHHHHHH-HHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 038852 260 GNLEKANELFD-ELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFR 313 (851)
Q Consensus 260 g~~~~A~~~~~-~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~ 313 (851)
|++++|.+++. ...+.-...+...-+.-++.+...+++.+..++..+++.++..
T Consensus 204 ~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 204 GKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred ccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 88999999994 4444444456666677788899999999999999999888753
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.01 E-value=3e-07 Score=102.40 Aligned_cols=216 Identities=16% Similarity=0.198 Sum_probs=179.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHH
Q 038852 214 YRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFN 293 (851)
Q Consensus 214 ~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~ 293 (851)
-..+...+...|-..+|+.+|++.. .|..++.+|+..|+..+|..+....++ -.+|...|..++++...
T Consensus 401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccC
Confidence 3557888999999999999998754 577889999999999999999988877 34578888888887777
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChH
Q 038852 294 QGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFS 373 (851)
Q Consensus 294 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~ 373 (851)
..-+++|.++++....+ .-..+.....+.++++++.+.|+..++.+.- ...+|..++.+..+.+++.
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl------q~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL------QLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc------chhHHHhccHHHHHHhhhH
Confidence 77788888888765443 1222333345579999999999998874332 6789999999999999999
Q ss_pred HHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 038852 374 EAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELF 453 (851)
Q Consensus 374 ~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~ 453 (851)
.|.+.|.......+. +...||++..+|.+.++-.+|...+.+..+.+ .-+..+|...+....+.|.+++|++.+
T Consensus 537 ~av~aF~rcvtL~Pd-----~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPD-----NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred HHHHHHHHHhhcCCC-----chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHH
Confidence 999999999877666 78899999999999999999999999999876 446778888888889999999999999
Q ss_pred HHHHHc
Q 038852 454 NRMVES 459 (851)
Q Consensus 454 ~~m~~~ 459 (851)
.++.+.
T Consensus 611 ~rll~~ 616 (777)
T KOG1128|consen 611 HRLLDL 616 (777)
T ss_pred HHHHHh
Confidence 999864
No 113
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.01 E-value=9.1e-09 Score=108.42 Aligned_cols=249 Identities=16% Similarity=0.167 Sum_probs=133.4
Q ss_pred HhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHH
Q 038852 257 LNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQ 336 (851)
Q Consensus 257 ~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~ 336 (851)
.-.|++..++.-++ ........+......+.++|...|+++.++.-+ .+.. .+.......+...+...++.+.++
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei---~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEI---KKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS----TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHh---ccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 34455555554333 112222222333344445555555554433222 1111 233334443443333334445555
Q ss_pred HHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHH
Q 038852 337 ALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEK 416 (851)
Q Consensus 337 ~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~ 416 (851)
.-+++.+....... +..+....+.++...|++++|++++++. . +.......+.+|.+.+++|.|.+
T Consensus 87 ~~l~~~~~~~~~~~----~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~-----~lE~~al~Vqi~L~~~R~dlA~k 152 (290)
T PF04733_consen 87 EELKELLADQAGES----NEIVQLLAATILFHEGDYEEALKLLHKG-----G-----SLELLALAVQILLKMNRPDLAEK 152 (290)
T ss_dssp HHHHHCCCTS---C----HHHHHHHHHHHHCCCCHHHHHHCCCTTT-----T-----CHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHhccccc----cHHHHHHHHHHHHHcCCHHHHHHHHHcc-----C-----cccHHHHHHHHHHHcCCHHHHHH
Confidence 54444333222111 3334444455666677888887777543 1 56666677777888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 038852 417 LLREISTKSLSPDVTTFRTLIDAYL----KVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMG 492 (851)
Q Consensus 417 l~~~m~~~g~~pd~~~~~~Ll~~~~----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~ 492 (851)
.++.|.+. ..|. +...|+.++. ..+++.+|..+|+++.+. ...+....+.++.++...|++++|.+++++..
T Consensus 153 ~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 153 ELKNMQQI--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHHHHhc--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 88888754 3333 2333333332 233578888888887654 34455666667777888888888888888877
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHc
Q 038852 493 EKDPKPDFLIYDVVVRGLCNEGLF-DMSKDIVDQMMKY 529 (851)
Q Consensus 493 ~~~~~pd~~~~~~ll~a~~~~g~~-~~A~~~~~~m~~~ 529 (851)
+.+.. |..++..++.++...|+. +.+.+++..+...
T Consensus 229 ~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 229 EKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 76544 566777777777777776 6666777776653
No 114
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.97 E-value=1.8e-07 Score=96.82 Aligned_cols=102 Identities=16% Similarity=0.214 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH-HHHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN-IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSS-NTYRH 216 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd-~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~-~~~~~ 216 (851)
...+..++..+.+.|++++|+..|++++......+. ..++..++.+|...|++++|+..|+++++..+..+.. .++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 445555555566666666666666666554322221 1345556666666666666666666666655443322 23444
Q ss_pred HHHHHHHc--------CCHHHHHHHHHHHHhc
Q 038852 217 LTKGFVDA--------GRIGEAVDLLRDMLSR 240 (851)
Q Consensus 217 Li~~~~~~--------g~~~~A~~l~~~m~~~ 240 (851)
++.++... |++++|++.|+++++.
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 44444433 4455555555555544
No 115
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.96 E-value=1.1e-08 Score=107.86 Aligned_cols=257 Identities=16% Similarity=0.186 Sum_probs=169.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 038852 110 RVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEG 189 (851)
Q Consensus 110 ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g 189 (851)
-++.+.-.|.+..++..++ ........+......+.+++...|.++.++.-+.. +-.|.......+...+...+
T Consensus 7 ~vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~-----~~~~~l~av~~la~y~~~~~ 80 (290)
T PF04733_consen 7 TVRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK-----SSSPELQAVRLLAEYLSSPS 80 (290)
T ss_dssp HHHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T-----TSSCCCHHHHHHHHHHCTST
T ss_pred HHHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc-----CCChhHHHHHHHHHHHhCcc
Confidence 3567777899998886665 22222222344555677888889998876544332 12466666666655444435
Q ss_pred ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038852 190 KVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELF 269 (851)
Q Consensus 190 ~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~ 269 (851)
+-+.++.-+++.+.......+.......+.++...|++++|++++.+. -+.......+.+|++.++++.|.+.+
T Consensus 81 ~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l 154 (290)
T PF04733_consen 81 DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKEL 154 (290)
T ss_dssp THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHH
Confidence 556666655544332211123333334445666789999999988653 26777888899999999999999999
Q ss_pred HHHHhcCCccchhhHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038852 270 DELKQRCLVYDGVVNATFMEWWFN----QGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDN 345 (851)
Q Consensus 270 ~~~~~~~~~~d~~~~~~li~~~~~----~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 345 (851)
+.|.+.+ +..+...++.+|.. .+++.+|..+|+++.+. ...+..+.+.++.++...|++++|.+++++++..
T Consensus 155 ~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 155 KNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK 230 (290)
T ss_dssp HHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC
T ss_pred HHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9998764 33444444444433 34689999999997665 4567888999999999999999999999998764
Q ss_pred CCCCCCCccCHHHHHHHHHHHHHcCCh-HHHHHHHHHhccCCCC
Q 038852 346 HQPPNIQAVNSDTFNIMVNECFKHGKF-SEAIETFKKAGTHPKS 388 (851)
Q Consensus 346 ~~~p~~~~~~~~~~~~L~~~~~~~g~~-~~A~~~~~~~~~~~~~ 388 (851)
+ ++ +..++.+++.+....|+. +.+.+++..+....+.
T Consensus 231 ~--~~----~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 231 D--PN----DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp ---CC----HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred c--cC----CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 4 33 788899999998898988 6677788887654443
No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.93 E-value=1.8e-07 Score=96.76 Aligned_cols=190 Identities=16% Similarity=0.141 Sum_probs=135.0
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH--HHH
Q 038852 173 PNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS-SNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADS--LVY 249 (851)
Q Consensus 173 pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~-~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~~~ 249 (851)
.....+..++..+...|++++|+..|+++++..+..+. ..++..++.++...|++++|++.|+++++....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 35677888999999999999999999999998765433 247888999999999999999999999987554222 256
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHH
Q 038852 250 NNLISGFLNL--------GNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNT 321 (851)
Q Consensus 250 ~~Li~~~~~~--------g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~ 321 (851)
..++.++... |++++|++.|+++++.... +...+..+..... ... ... .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~-------~~~-------~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN-------RLA-------GKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH-------HHH-------HHHHH
Confidence 6677777665 7788899999988876554 2222222111100 000 000 11224
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCC-CCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccC
Q 038852 322 LLEVLLKHEKKEEAQALFEQMLDNHQP-PNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTH 385 (851)
Q Consensus 322 Li~~~~~~g~~~~A~~l~~~m~~~~~~-p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~ 385 (851)
+...|.+.|++++|+..|+++++.... |. ....+..++.++.+.|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPA----TEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcc----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 667788889999999999998875321 21 4578888888999999999998888877543
No 117
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=7e-07 Score=93.22 Aligned_cols=295 Identities=16% Similarity=0.134 Sum_probs=178.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038852 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHL 217 (851)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~L 217 (851)
...........+.+..+|.+|++.+..+++... .++..|..-+..+...|++++|+--.+..++..+. .......+
T Consensus 48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~p--d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~--~~k~~~r~ 123 (486)
T KOG0550|consen 48 QAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCP--DNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG--FSKGQLRE 123 (486)
T ss_pred HHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCc--cchhhhchhHHHHHHHHhHhhcccchhhheecCCC--ccccccch
Confidence 344555667777777888888888887766422 34556666777777778888877777666555433 23355556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc-cchhhHHHH-HHHHHHcC
Q 038852 218 TKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLV-YDGVVNATF-MEWWFNQG 295 (851)
Q Consensus 218 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~-~d~~~~~~l-i~~~~~~g 295 (851)
..++...++..+|.+.|+. ...+ ....|+..++.+...... |....+..+ ..++...|
T Consensus 124 ~~c~~a~~~~i~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~ 183 (486)
T KOG0550|consen 124 GQCHLALSDLIEAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLG 183 (486)
T ss_pred hhhhhhhHHHHHHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcc
Confidence 6666666666666666651 1111 111122222222221111 111222222 34456677
Q ss_pred CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCC------ccCHHHHHHHHHHHHHc
Q 038852 296 KDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQ------AVNSDTFNIMVNECFKH 369 (851)
Q Consensus 296 ~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~------~~~~~~~~~L~~~~~~~ 369 (851)
++++|..+--.+++.+.. +......-..++.-.++.+.|+..|.+.+..+..-... ..-...+..-++-..+.
T Consensus 184 ~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~ 262 (486)
T KOG0550|consen 184 DYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKN 262 (486)
T ss_pred cchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhc
Confidence 777777777666665532 12222222344455677788888888777643221100 00112233344556788
Q ss_pred CChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHH
Q 038852 370 GKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPD-VTTFRTLIDAYLKVERIDD 448 (851)
Q Consensus 370 g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~Ll~~~~~~g~~~~ 448 (851)
|++.+|.++|.+++...+. ...++...|.....+..+.|+.++|+.-.++.++. .+. +..|..-+.++...++|++
T Consensus 263 G~y~~A~E~Yteal~idP~-n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~ 339 (486)
T KOG0550|consen 263 GNYRKAYECYTEALNIDPS-NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEE 339 (486)
T ss_pred cchhHHHHHHHHhhcCCcc-ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998887655 55667888888888889999999999988888764 211 2334444567778889999
Q ss_pred HHHHHHHHHHcC
Q 038852 449 ALELFNRMVESG 460 (851)
Q Consensus 449 A~~~~~~m~~~~ 460 (851)
|++.|+++....
T Consensus 340 AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 340 AVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHhhc
Confidence 999999988764
No 118
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=6e-07 Score=93.70 Aligned_cols=287 Identities=10% Similarity=0.017 Sum_probs=179.6
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTY 185 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~ 185 (851)
........+.+..++.+|+..+..++...+. ++..|..-+..+...|+|++|+--.+..++... -.......+..++
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd--~~~k~~~r~~~c~ 127 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKD--GFSKGQLREGQCH 127 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCC--Cccccccchhhhh
Confidence 4556677888888999999999999976533 466677777778889999999887766544221 1233455666777
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCHHHHHHH-HHHHHhcCCHH
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG-ADSLVYNNL-ISGFLNLGNLE 263 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~~~~~L-i~~~~~~g~~~ 263 (851)
...++..+|.+.|+.-- .| ....|+..++.++..... |...+|..| ..++...|+++
T Consensus 128 ~a~~~~i~A~~~~~~~~----------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~ 186 (486)
T KOG0550|consen 128 LALSDLIEAEEKLKSKQ----------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYD 186 (486)
T ss_pred hhhHHHHHHHHHhhhhh----------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccch
Confidence 77777777777666211 11 112223333333222211 222333322 23344556666
Q ss_pred HHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCH-----------HHHHHHHHHHHhCCCH
Q 038852 264 KANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTP-----------ATCNTLLEVLLKHEKK 332 (851)
Q Consensus 264 ~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~-----------~~~~~Li~~~~~~g~~ 332 (851)
+|..+--.+++.+.. +......-..++.-.++.+.|+..|.+.+..++.... ..|..-++-..+.|++
T Consensus 187 ~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y 265 (486)
T KOG0550|consen 187 EAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNY 265 (486)
T ss_pred hHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccch
Confidence 666665555554333 2222223333344455666666666666555432211 2233334556788999
Q ss_pred HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHH
Q 038852 333 EEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLE 412 (851)
Q Consensus 333 ~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~ 412 (851)
.+|.++|.+++. +.|+....+...|...+.+..+.|+.++|+.-.+++...+.. -+..|..-..++...++|+
T Consensus 266 ~~A~E~Yteal~--idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-----yikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 266 RKAYECYTEALN--IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-----YIKALLRRANCHLALEKWE 338 (486)
T ss_pred hHHHHHHHHhhc--CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-----HHHHHHHHHHHHHHHHHHH
Confidence 999999999987 556555557888999999999999999999999988766432 3344555556677788999
Q ss_pred HHHHHHHHHHhC
Q 038852 413 EAEKLLREISTK 424 (851)
Q Consensus 413 ~A~~l~~~m~~~ 424 (851)
+|++-|+.....
T Consensus 339 ~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 339 EAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHhh
Confidence 999999988765
No 119
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.89 E-value=1.3e-08 Score=105.20 Aligned_cols=277 Identities=16% Similarity=0.127 Sum_probs=176.5
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHH--c-CC-CCCCHHHH
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRP---TVFTCNAIIAAMYRAKRYDDAVALFKYFFD--Q-AD-IVPNIVSY 178 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~~~~--~-~~-~~pd~~~~ 178 (851)
.+..-...+++.|+....+.+|+.++..|... -..+|..|.++|.-.++|++|+++...=+. + .| -.-...+.
T Consensus 19 eLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKss 98 (639)
T KOG1130|consen 19 ELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSS 98 (639)
T ss_pred HHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccc
Confidence 34445678999999999999999999887431 235688888999999999999987543211 0 01 11123445
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHHcCC--------------------HHHHHHHH
Q 038852 179 NNLINTYCDEGKVDEGMNVFRRII----ETAPVGPSSNTYRHLTKGFVDAGR--------------------IGEAVDLL 234 (851)
Q Consensus 179 ~~Li~~~~~~g~~~~A~~l~~~~~----~~~~~~p~~~~~~~Li~~~~~~g~--------------------~~~A~~l~ 234 (851)
..|.+.+-..|.|++|+.+..+-+ +.+.......++..|..+|...|+ ++.|+++|
T Consensus 99 gNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy 178 (639)
T KOG1130|consen 99 GNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFY 178 (639)
T ss_pred ccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHH
Confidence 567777778889988876554432 222122234577788888877654 23445555
Q ss_pred HHHHhc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----C-CccchhhHHHHHHHHHHcCCHHHHHHHH
Q 038852 235 RDMLSR----QLG-ADSLVYNNLISGFLNLGNLEKANELFDELKQR----C-LVYDGVVNATFMEWWFNQGKDKEAMQSY 304 (851)
Q Consensus 235 ~~m~~~----g~~-pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~----~-~~~d~~~~~~li~~~~~~g~~~~A~~l~ 304 (851)
.+-++. |-. .-...|..|+..|+-+|+++.|+...+.-++. | .......+..+.+++.-.|+++.|.+.|
T Consensus 179 ~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehY 258 (639)
T KOG1130|consen 179 MENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHY 258 (639)
T ss_pred HHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHH
Confidence 443321 100 01246777888888888999998877654332 1 1123456777888888888888888888
Q ss_pred HHHHHhcC-----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHH
Q 038852 305 KSLMERNF-----RMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETF 379 (851)
Q Consensus 305 ~~~~~~~~-----~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~ 379 (851)
+..+...+ ......+..|.+.|.-..++++|+.++.+-+......+.......++..|+.+|...|..++|+.+.
T Consensus 259 K~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fa 338 (639)
T KOG1130|consen 259 KLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFA 338 (639)
T ss_pred HHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 77554322 1223455667888888888888888877654321111111114567777888888888888887776
Q ss_pred HHh
Q 038852 380 KKA 382 (851)
Q Consensus 380 ~~~ 382 (851)
+..
T Consensus 339 e~h 341 (639)
T KOG1130|consen 339 ELH 341 (639)
T ss_pred HHH
Confidence 654
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.88 E-value=9.4e-07 Score=104.29 Aligned_cols=151 Identities=17% Similarity=0.192 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHH
Q 038852 318 TCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAG 397 (851)
Q Consensus 318 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~ 397 (851)
.+..|+.+|.+.|+.++|..+|+++++.+ |+ |..+.+.++..|... ++++|+.++.++..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~----n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~------------- 177 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD--RD----NPEIVKKLATSYEEE-DKEKAITYLKKAIY------------- 177 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC--cc----cHHHHHHHHHHHHHh-hHHHHHHHHHHHHH-------------
Confidence 44456666666666666666666666543 22 566666666666666 66666666655521
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHH
Q 038852 398 YNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELIT 477 (851)
Q Consensus 398 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~ 477 (851)
.|...+++.++++++.++...... |...+..+.......- +..-.+.++..+...|..
T Consensus 178 ------~~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~---------------~~~~~~~~~~~l~~~y~~ 235 (906)
T PRK14720 178 ------RFIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHR---------------EFTRLVGLLEDLYEPYKA 235 (906)
T ss_pred ------HHHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhh---------------ccchhHHHHHHHHHHHhh
Confidence 134444555666666665543211 2222222221111110 111112222335555556
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 038852 478 KGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLC 511 (851)
Q Consensus 478 ~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~ 511 (851)
.++|++++.+|+.+++...+ |......++.+|.
T Consensus 236 ~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 236 LEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred hhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 66666666666666655433 4444444555444
No 121
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.87 E-value=6.5e-07 Score=105.61 Aligned_cols=132 Identities=10% Similarity=0.101 Sum_probs=77.5
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----------
Q 038852 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPV---------- 207 (851)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~---------- 207 (851)
+...|..|+..|...+++++|+.+.+..++..+-... .|..++..+...++++++..+ .++..-+.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~--~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSIS--ALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCccee--hHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHH
Confidence 4556666776666777777777777666554332222 233333345555554444433 22222111
Q ss_pred -------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038852 208 -------GPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 208 -------~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~ 275 (851)
.-+..++..|+.||-+.|+.++|..+|+++++.+.. |..+.|.++..|... ++++|++++.+++..
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 013346666777777777777777777777777655 677777777777777 777777777766654
No 122
>PF13041 PPR_2: PPR repeat family
Probab=98.85 E-value=7.3e-09 Score=78.05 Aligned_cols=50 Identities=38% Similarity=0.687 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038852 209 PSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLN 258 (851)
Q Consensus 209 p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~ 258 (851)
||..+|+.||.+|++.|++++|+++|++|.+.|+.||..||+.|+++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56667777777777777777777777777777777777777777777653
No 123
>PF13041 PPR_2: PPR repeat family
Probab=98.85 E-value=6.4e-09 Score=78.36 Aligned_cols=50 Identities=38% Similarity=0.692 Sum_probs=45.8
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 038852 393 MDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLK 442 (851)
Q Consensus 393 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~ 442 (851)
||+.+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.|+.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 58899999999999999999999999999999999999999999998864
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.85 E-value=3.9e-07 Score=90.39 Aligned_cols=164 Identities=20% Similarity=0.153 Sum_probs=129.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038852 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHL 217 (851)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~L 217 (851)
|..+ ..+...+.-.|+-+.+..+....... ...|....+.++...++.|++.+|+..|.++....+. |..+|+.+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~--d~~~~~~l 140 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT--DWEAWNLL 140 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC--ChhhhhHH
Confidence 4444 56677777788888888887775433 2346666777888888999999999999998877655 88899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCH
Q 038852 218 TKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKD 297 (851)
Q Consensus 218 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~ 297 (851)
..+|.+.|++++|..-|.++++.... +...+++|+..|.-.||++.|+.++......... |..+...+..+....|++
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCCh
Confidence 99999999999999999998887655 6778888888888889999999998888776554 777888888888888888
Q ss_pred HHHHHHHHHHH
Q 038852 298 KEAMQSYKSLM 308 (851)
Q Consensus 298 ~~A~~l~~~~~ 308 (851)
++|.++...-+
T Consensus 219 ~~A~~i~~~e~ 229 (257)
T COG5010 219 REAEDIAVQEL 229 (257)
T ss_pred HHHHhhccccc
Confidence 88887765543
No 125
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.82 E-value=5.6e-07 Score=89.73 Aligned_cols=121 Identities=13% Similarity=0.160 Sum_probs=83.1
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCC--HHH
Q 038852 188 EGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGF-LNLGN--LEK 264 (851)
Q Consensus 188 ~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~-~~~g~--~~~ 264 (851)
.++.++++..+++.++.++. |...|..|+.+|...|++++|+..|+++++.... +..++..++.++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~--~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ--NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHH
Confidence 55666777777777777655 6677777777777777777777777777776655 666777777653 55565 477
Q ss_pred HHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 038852 265 ANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNF 312 (851)
Q Consensus 265 A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~ 312 (851)
|.++++++++.+.. +..++..++..+.+.|++++|+..|+++++...
T Consensus 129 A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 129 TREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 77777777776665 566666666666666666666666666666554
No 126
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=2.4e-06 Score=84.60 Aligned_cols=152 Identities=14% Similarity=0.152 Sum_probs=80.7
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHH
Q 038852 323 LEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNII 402 (851)
Q Consensus 323 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li 402 (851)
+..|++.+++++|++..+... +.++...-..++.+..++|.|...+++|.... +..+.+-|+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~-----------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id-------ed~tLtQLA 176 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE-----------NLEAAALNVQILLKMHRFDLAEKELKKMQQID-------EDATLTQLA 176 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-------hHHHHHHHH
Confidence 445556666666666555411 23333333444555566666666666665432 334444444
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHc
Q 038852 403 ARYCE----NEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITK 478 (851)
Q Consensus 403 ~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~ 478 (851)
.++.+ .+.+.+|.-+|++|-++ ..|+..+.+.++.++...|++++|..+++++++.+.+......|.+..+....
T Consensus 177 ~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 177 QAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLG 255 (299)
T ss_pred HHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC
Confidence 44433 34466666677766653 45566666666666666777777777777776665554444444333333333
Q ss_pred CCHHHHHHHHHHHhh
Q 038852 479 GKVAECAPILTKMGE 493 (851)
Q Consensus 479 g~~~~A~~ll~~m~~ 493 (851)
.+.+-..+.+..++.
T Consensus 256 kd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 256 KDAEVTERNLSQLKL 270 (299)
T ss_pred CChHHHHHHHHHHHh
Confidence 333333444444443
No 127
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.81 E-value=0.00039 Score=74.08 Aligned_cols=440 Identities=11% Similarity=0.073 Sum_probs=242.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 038852 112 QSLIRAGDLDAASYLARQAVFSRIRP-----TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYC 186 (851)
Q Consensus 112 ~~l~~~g~~~~A~~l~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~ 186 (851)
-.+-+.+++.+|..+|.++.+..-.. .....+.++++|. .++.+.-...+.+..+..|..+-...+..| .+.
T Consensus 14 f~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~~s~~l~LF~~L--~~Y 90 (549)
T PF07079_consen 14 FILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFGKSAYLPLFKAL--VAY 90 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcCCchHHHHHHHH--HHH
Confidence 34668899999999999987654221 1344567777776 345666666666654544433222222222 345
Q ss_pred HcCChHHHHHHHHHHHHhCC-CC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CCHHHH
Q 038852 187 DEGKVDEGMNVFRRIIETAP-VG------------PSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG----ADSLVY 249 (851)
Q Consensus 187 ~~g~~~~A~~l~~~~~~~~~-~~------------p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~----pd~~~~ 249 (851)
+.+++++|++.|....+.-. .. .|...=+..+.+++..|++.++..++++++.+-++ -+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 78999999998887655411 11 11122355678899999999999999988775433 677888
Q ss_pred HHHHHHHHhc--------CC-------HHHHHHHHHHHHhc------CCccchhhHHHHHHHHHHcC--CHHHHHHHHHH
Q 038852 250 NNLISGFLNL--------GN-------LEKANELFDELKQR------CLVYDGVVNATFMEWWFNQG--KDKEAMQSYKS 306 (851)
Q Consensus 250 ~~Li~~~~~~--------g~-------~~~A~~~~~~~~~~------~~~~d~~~~~~li~~~~~~g--~~~~A~~l~~~ 306 (851)
+.++-++.+. .. ++.+.-+.++|... .+.|.......++...+-.- +..--+.+++.
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 8755554432 11 12222222222221 12233333444443333221 11222233333
Q ss_pred HHHhcCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccC
Q 038852 307 LMERNFRMTP-ATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTH 385 (851)
Q Consensus 307 ~~~~~~~~~~-~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~ 385 (851)
..+.-+.|+- .+...|+..+.. +.+++..+.+.+....+.+ ....-..+|..++....+.++..+|..++.-+...
T Consensus 251 We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~-Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 251 WENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEK-LKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 3333333332 122333333333 4555555554443321110 00002457788888889999999998888776554
Q ss_pred CCCCCCccC-HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHH-HH---HHHHHHHHHcCC-HHHHHHHHHH
Q 038852 386 PKSKPFAMD-VAGYNNIIARYCE----NEMLEEAEKLLREISTKSLSPDVT-TF---RTLIDAYLKVER-IDDALELFNR 455 (851)
Q Consensus 386 ~~~~~~~~d-~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~-~~---~~Ll~~~~~~g~-~~~A~~~~~~ 455 (851)
.+...+.-. ..+-..+.+..+. .-+..+-+.++++....++ |.. .. ..-+.-+.+.|. -++|+++++.
T Consensus 328 dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~ 405 (549)
T PF07079_consen 328 DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKL 405 (549)
T ss_pred CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 443211000 0111122233331 1233445566666665433 321 11 222334556666 7889999999
Q ss_pred HHHcCCccchhHHHHH----HHHHHH---cCCHHHHHHHHHHHhhCCCCC----CHHHHHHHHHH--HHhcCChHHHHHH
Q 038852 456 MVESGLRVVVSFGTKV----FNELIT---KGKVAECAPILTKMGEKDPKP----DFLIYDVVVRG--LCNEGLFDMSKDI 522 (851)
Q Consensus 456 m~~~~~~~~~~~~~~L----~~~~~~---~g~~~~A~~ll~~m~~~~~~p----d~~~~~~ll~a--~~~~g~~~~A~~~ 522 (851)
++..... +...-+.+ -..|.. ...+.+-+++-+-+.+.|+.| +...-+.|.+| +...|++.++.-+
T Consensus 406 il~ft~y-D~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y 484 (549)
T PF07079_consen 406 ILQFTNY-DIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY 484 (549)
T ss_pred HHHhccc-cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 8875322 22222212 122222 233444444444455566654 34455666665 4678999999887
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 038852 523 VDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADR 562 (851)
Q Consensus 523 ~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~ 562 (851)
-..+.+ +.|++.++..++-++....+++||.+++.++.
T Consensus 485 s~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 485 SSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 777766 56899999999999999999999999999863
No 128
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.81 E-value=2.3e-07 Score=96.21 Aligned_cols=297 Identities=13% Similarity=0.062 Sum_probs=163.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCCCCHHHHHHH
Q 038852 146 IAAMYRAKRYDDAVALFKYFFDQADIVPN----IVSYNNLINTYCDEGKVDEGMNVFRRIIET----APVGPSSNTYRHL 217 (851)
Q Consensus 146 i~~~~~~g~~~~A~~l~~~~~~~~~~~pd----~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~----~~~~p~~~~~~~L 217 (851)
..-+++.|++...+.+|+.++.... .| ..+|.-|.++|.-.+||++|+++...=+.. +...-...+...|
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGT--eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGT--EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcc--hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 4456778888888888888766422 12 234556666666777777777654321110 1000122344456
Q ss_pred HHHHHHcCCHHHHHHHHHHH----HhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHH
Q 038852 218 TKGFVDAGRIGEAVDLLRDM----LSRQLG-ADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWF 292 (851)
Q Consensus 218 i~~~~~~g~~~~A~~l~~~m----~~~g~~-pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~ 292 (851)
...+.-.|.|++|+-+..+- .+.|-+ .....+..|+..|...|+.-....- .+.+-. +..+-
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~p----ee~g~f-~~ev~-------- 168 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAP----EEKGAF-NAEVT-------- 168 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCCh----hhcccc-cHHHH--------
Confidence 66666667777776554332 222211 1224455566666555532110000 000000 00000
Q ss_pred HcCCHHHHHHHHHHHHHh----cCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHH
Q 038852 293 NQGKDKEAMQSYKSLMER----NFR-MTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECF 367 (851)
Q Consensus 293 ~~g~~~~A~~l~~~~~~~----~~~-~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~ 367 (851)
..++.|.++|.+-++. +-. .--..|..|.+.|.-.|+++.|+...+.-+.....-........++..|+.++.
T Consensus 169 --~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hi 246 (639)
T KOG1130|consen 169 --SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHI 246 (639)
T ss_pred --HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhh
Confidence 0122333333332211 000 011456677777888899999988776544311110000113457888999999
Q ss_pred HcCChHHHHHHHHHhccCCCCC-CCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHH
Q 038852 368 KHGKFSEAIETFKKAGTHPKSK-PFAMDVAGYNNIIARYCENEMLEEAEKLLREISTK-----SLSPDVTTFRTLIDAYL 441 (851)
Q Consensus 368 ~~g~~~~A~~~~~~~~~~~~~~-~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~pd~~~~~~Ll~~~~ 441 (851)
-.|+++.|.+.|+......... .-.....+...|...|.-..++++|+.++.+-+.. ...-....+.+|+.+|.
T Consensus 247 flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~ 326 (639)
T KOG1130|consen 247 FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFN 326 (639)
T ss_pred hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 9999999999988753211000 01114556677888888888999999888764321 11124567888999999
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 038852 442 KVERIDDALELFNRMVES 459 (851)
Q Consensus 442 ~~g~~~~A~~~~~~m~~~ 459 (851)
..|..++|+.+.+..++.
T Consensus 327 alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 327 ALGEHRKALYFAELHLRS 344 (639)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 999999999888777654
No 129
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.81 E-value=7.4e-07 Score=88.43 Aligned_cols=160 Identities=17% Similarity=0.147 Sum_probs=137.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038852 179 NNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLN 258 (851)
Q Consensus 179 ~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~ 258 (851)
..+...+...|+-+.+..+...+....+. |......+++..++.|++.+|+..|+++...... |..+|+.++.+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~--d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~-d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPK--DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT-DWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcc--cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC-ChhhhhHHHHHHHH
Confidence 66777888889999999888887665544 7777778999999999999999999999988665 99999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 038852 259 LGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQAL 338 (851)
Q Consensus 259 ~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l 338 (851)
.|+++.|...|.+.++.... +..+++.+...|.-.|+++.|..++......... |..+-..|..+....|++++|.++
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 147 LGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhh
Confidence 99999999999999988766 7788899999999999999999999998877543 445666788888999999999988
Q ss_pred HHHHH
Q 038852 339 FEQML 343 (851)
Q Consensus 339 ~~~m~ 343 (851)
...-+
T Consensus 225 ~~~e~ 229 (257)
T COG5010 225 AVQEL 229 (257)
T ss_pred ccccc
Confidence 76544
No 130
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.73 E-value=0.00014 Score=76.89 Aligned_cols=410 Identities=10% Similarity=0.053 Sum_probs=206.2
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHH
Q 038852 136 RPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYR 215 (851)
Q Consensus 136 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~ 215 (851)
+.|..+|..||..|...+.+++..++++.|..-..+ -..+|..-+.+-....++.....+|.+++... . +.+.|.
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~--~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~-l--~ldLW~ 113 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPI--MEHAWRLYMSGELARKDFRSVESLFGRCLKKS-L--NLDLWM 113 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCcc--ccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh-c--cHhHHH
Confidence 457788888888888888888888888888543333 23457777776677788888888888887653 3 566777
Q ss_pred HHHHHHHHcCCH------HHHHHHHHHHHh-cCCCC-CHHHHHHHHHHH---HhcC------CHHHHHHHHHHHHhcCCc
Q 038852 216 HLTKGFVDAGRI------GEAVDLLRDMLS-RQLGA-DSLVYNNLISGF---LNLG------NLEKANELFDELKQRCLV 278 (851)
Q Consensus 216 ~Li~~~~~~g~~------~~A~~l~~~m~~-~g~~p-d~~~~~~Li~~~---~~~g------~~~~A~~~~~~~~~~~~~ 278 (851)
..+....+.+.. ....+.|+-.+. .++.| ....|+..+..+ -..| ++|..++.|.+|+..-+.
T Consensus 114 lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~ 193 (660)
T COG5107 114 LYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMG 193 (660)
T ss_pred HHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccc
Confidence 766655543321 112223332222 22222 222343333322 2233 344555566665543221
Q ss_pred cchhhHHHHH------H-----HHHH--cCCHHHHHHHHHHHHHh--cCC----CCHHH-----------HHHHHHHHHh
Q 038852 279 YDGVVNATFM------E-----WWFN--QGKDKEAMQSYKSLMER--NFR----MTPAT-----------CNTLLEVLLK 328 (851)
Q Consensus 279 ~d~~~~~~li------~-----~~~~--~g~~~~A~~l~~~~~~~--~~~----~~~~~-----------~~~Li~~~~~ 328 (851)
--...|...- + -+.. .-.+..|...++++... |.+ .+..+ |...|+.-..
T Consensus 194 nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~e 273 (660)
T COG5107 194 NLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEME 273 (660)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhc
Confidence 1111111110 0 0000 11233445555544321 111 01111 2222222111
Q ss_pred CC-----C-H-HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHH
Q 038852 329 HE-----K-K-EEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNI 401 (851)
Q Consensus 329 ~g-----~-~-~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~l 401 (851)
.| + . ....-+|+.++.--. ....+|......+...++-..|+...++.....+. .. ..+
T Consensus 274 n~l~L~~~~~~qRi~y~~~q~~~y~~------~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps------L~--~~l 339 (660)
T COG5107 274 NGLKLGGRPHEQRIHYIHNQILDYFY------YAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS------LT--MFL 339 (660)
T ss_pred CCcccCCCcHHHHHHHHHHHHHHHhh------hhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc------hh--eeH
Confidence 11 1 1 112223333332111 13445555555555666666666665554332221 00 011
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh--------------CCC---------------CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 038852 402 IARYCENEMLEEAEKLLREIST--------------KSL---------------SPDVTTFRTLIDAYLKVERIDDALEL 452 (851)
Q Consensus 402 i~~~~~~g~~~~A~~l~~~m~~--------------~g~---------------~pd~~~~~~Ll~~~~~~g~~~~A~~~ 452 (851)
...|.-..+-++....|++... .+. .--..+|..+++...+..-++.|..+
T Consensus 340 se~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~ 419 (660)
T COG5107 340 SEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKL 419 (660)
T ss_pred HHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHH
Confidence 1112112222222221211100 000 01134566677777777778888888
Q ss_pred HHHHHHcC-CccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038852 453 FNRMVESG-LRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIY-DVVVRGLCNEGLFDMSKDIVDQMMKYG 530 (851)
Q Consensus 453 ~~~m~~~~-~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~-~~ll~a~~~~g~~~~A~~~~~~m~~~g 530 (851)
|.++.+.+ ....+.++++++. |...|+...|.++|+--+.. -+|...| ...+.-+...++-+.|..+|+..+.+-
T Consensus 420 F~k~rk~~~~~h~vyi~~A~~E-~~~~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~ 496 (660)
T COG5107 420 FIKLRKEGIVGHHVYIYCAFIE-YYATGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVERL 496 (660)
T ss_pred HHHHhccCCCCcceeeeHHHHH-HHhcCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHH
Confidence 88888877 3445555554443 44567888888888775554 2233333 345566677788888888888665421
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCC
Q 038852 531 -VGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAA 567 (851)
Q Consensus 531 -~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~~~~ 567 (851)
-.--..+|..+++.-.+-|++..+..+-+++...+|.
T Consensus 497 ~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 497 EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 0122567777888888888888887777777776653
No 131
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.73 E-value=4.9e-07 Score=85.29 Aligned_cols=123 Identities=13% Similarity=0.065 Sum_probs=83.8
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 038852 125 YLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIET 204 (851)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~ 204 (851)
.++++++... |+ .+..+...+...|++++|++.|+.++.... .+...|..++.++...|++++|+..|+++++.
T Consensus 14 ~~~~~al~~~--p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSVD--PE--TVYASGYASWQEGDYSRAVIDFSWLVMAQP--WSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHcC--HH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3455555332 22 244566677778888888888887766433 35667777777888888888888888888777
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038852 205 APVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGF 256 (851)
Q Consensus 205 ~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~ 256 (851)
++. +..++..++.++...|++++|++.|+++++.... +...|.....++
T Consensus 88 ~p~--~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~-~~~~~~~~~~~~ 136 (144)
T PRK15359 88 DAS--HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA-DASWSEIRQNAQ 136 (144)
T ss_pred CCC--CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHH
Confidence 655 6667777888888888888888888887776544 555555444443
No 132
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.72 E-value=5.6e-07 Score=84.88 Aligned_cols=117 Identities=12% Similarity=0.060 Sum_probs=88.6
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038852 159 VALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDML 238 (851)
Q Consensus 159 ~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~ 238 (851)
..+|++.++. +...+..++.++...|++++|+..|+.++..++. +..+|..++.++...|++++|+..|++++
T Consensus 13 ~~~~~~al~~-----~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 13 EDILKQLLSV-----DPETVYASGYASWQEGDYSRAVIDFSWLVMAQPW--SWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHHc-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3456666542 2223556777788888888888888888887766 77788888888888888888888888888
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhH
Q 038852 239 SRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVN 284 (851)
Q Consensus 239 ~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~ 284 (851)
+.+.. +..++..++.++...|++++|+..|+.+++.... +...+
T Consensus 86 ~l~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~-~~~~~ 129 (144)
T PRK15359 86 MLDAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA-DASWS 129 (144)
T ss_pred hcCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHH
Confidence 87655 7788888888888888888888888888876554 33333
No 133
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.71 E-value=6.2e-06 Score=96.87 Aligned_cols=135 Identities=14% Similarity=0.091 Sum_probs=119.3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038852 173 PNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNL 252 (851)
Q Consensus 173 pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~L 252 (851)
.++..+..|+.+....|++++|+.+++.+++..|. +...+..++.++.+.+++++|+..+++++..... +......+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd--~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD--SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 46888999999999999999999999999998877 7788889999999999999999999999998776 78888899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 038852 253 ISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERN 311 (851)
Q Consensus 253 i~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~ 311 (851)
+.++.+.|++++|+++|++++..+.. +..++..+..++.+.|+.++|...|+++++..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999985443 67888888899999999999999999888764
No 134
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.71 E-value=1.7e-06 Score=86.20 Aligned_cols=118 Identities=14% Similarity=0.148 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHH-HHHcCC--
Q 038852 295 GKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNE-CFKHGK-- 371 (851)
Q Consensus 295 g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~-~~~~g~-- 371 (851)
++.++++..++..++.++ .+...|..|+..|...|++++|+..|+++++.. |+ +..++..++.+ |...|+
T Consensus 53 ~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~----~~~~~~~lA~aL~~~~g~~~ 125 (198)
T PRK10370 53 QTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--GE----NAELYAALATVLYYQAGQHM 125 (198)
T ss_pred hhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC----CHHHHHHHHHHHHHhcCCCC
Confidence 444455555555554443 234455555555555566666666655555532 22 45555555554 244444
Q ss_pred hHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038852 372 FSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTK 424 (851)
Q Consensus 372 ~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 424 (851)
.++|.++|+++....+. +..++..++..+.+.|++++|+..|+++++.
T Consensus 126 ~~~A~~~l~~al~~dP~-----~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 126 TPQTREMIDKALALDAN-----EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred cHHHHHHHHHHHHhCCC-----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35555555555554444 4455555555555555555555555555543
No 135
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=4.6e-06 Score=82.64 Aligned_cols=250 Identities=17% Similarity=0.179 Sum_probs=163.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCH
Q 038852 253 ISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKK 332 (851)
Q Consensus 253 i~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~ 332 (851)
++-+.-.|++..++..-....... -+......+.+.|...|.+...+.-.+.. . .+....+..+...+..-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~eI~~~---~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISEIKEG---K-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccccccc---c-CChHHHHHHHHHHhhCcchh
Confidence 455566688888877666554432 24455555666777777765544333222 1 22223444344444444554
Q ss_pred HHHH-HHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCH
Q 038852 333 EEAQ-ALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEML 411 (851)
Q Consensus 333 ~~A~-~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~ 411 (851)
++-+ ++.+.+....... +......-+..|++.|++++|++.++... +......-+.++.+..++
T Consensus 89 ~~~~~~l~E~~a~~~~~s-----n~i~~l~aa~i~~~~~~~deAl~~~~~~~----------~lE~~Al~VqI~lk~~r~ 153 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGS-----NLIDLLLAAIIYMHDGDFDEALKALHLGE----------NLEAAALNVQILLKMHRF 153 (299)
T ss_pred HHHHHHHHHHHHhhccch-----hHHHHHHhhHHhhcCCChHHHHHHHhccc----------hHHHHHHHHHHHHHHHHH
Confidence 4444 4445555443332 34455566778999999999999988742 444444445567788899
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHH
Q 038852 412 EEAEKLLREISTKSLSPDVTTFRTLIDAYLK----VERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPI 487 (851)
Q Consensus 412 ~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~l 487 (851)
|-|++.+++|... -+..|.+-|..++.+ .+.+.+|.-+|+++.++- .++..+.+-.+.++...|++++|..+
T Consensus 154 d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~l 229 (299)
T KOG3081|consen 154 DLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESL 229 (299)
T ss_pred HHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHH
Confidence 9999999999864 256677777777665 456889999999998753 45556666677888899999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 038852 488 LTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMS-KDIVDQMMK 528 (851)
Q Consensus 488 l~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A-~~~~~~m~~ 528 (851)
++.++++..+ |..++..++.+-...|.-.++ .+.+..++.
T Consensus 230 L~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 230 LEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 9999988766 677777777776677765444 444555544
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=7.5e-06 Score=80.55 Aligned_cols=189 Identities=16% Similarity=0.172 Sum_probs=135.6
Q ss_pred CCHHHHHHHHHHHHHcC----CCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChH
Q 038852 118 GDLDAASYLARQAVFSR----IRPTV-FTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVD 192 (851)
Q Consensus 118 g~~~~A~~l~~~~~~~~----~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~ 192 (851)
.+.++.++++..++... ..++. .+|..++-+....|+.+.|..+++.+.++..-.+.+.-+.+ ..+-..|.++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lka--m~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKA--MLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHH--HHHHHhhchh
Confidence 35666777776665432 23333 34555666667788999999999888665432222333322 2356678899
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038852 193 EGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDEL 272 (851)
Q Consensus 193 ~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~ 272 (851)
+|+++|+.+++.++. |..++..-+.+....|+-.+|++-+.+.++. +.-|...|.-|...|...|++++|.-+++++
T Consensus 104 ~A~e~y~~lL~ddpt--~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPT--DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccCcc--hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 999999999888765 7778877777777888888888888888887 4448899999999999999999999999988
Q ss_pred HhcCCccchhhHHHHHHHHHHcC---CHHHHHHHHHHHHHhcC
Q 038852 273 KQRCLVYDGVVNATFMEWWFNQG---KDKEAMQSYKSLMERNF 312 (851)
Q Consensus 273 ~~~~~~~d~~~~~~li~~~~~~g---~~~~A~~l~~~~~~~~~ 312 (851)
+-..+. +...+..+.+.+.-.| +++.|.++|...++.+.
T Consensus 181 ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 876655 6666777777665554 55667788888877765
No 137
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.65 E-value=5.2e-06 Score=97.50 Aligned_cols=144 Identities=10% Similarity=0.093 Sum_probs=103.8
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 038852 280 DGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTF 359 (851)
Q Consensus 280 d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~ 359 (851)
+...+..|+.+....|.+++|+.+++.+++..+. +...+..++.++.+.+++++|+..+++++... |+ +....
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~----~~~~~ 157 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SS----SAREI 157 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CC----CHHHH
Confidence 5777777788888888888888888888777653 33556667777888888888888888887743 33 67777
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038852 360 NIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTL 436 (851)
Q Consensus 360 ~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~L 436 (851)
+.++.++.+.|++++|+++|+++....+. +..++..+..++.+.|+.++|...|++.++. ..+....|+.+
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p~-----~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~ 228 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQHPE-----FENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRR 228 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHH
Confidence 78888888888888888888887754333 5677777788888888888888888877764 23344444443
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.64 E-value=1.3e-05 Score=86.23 Aligned_cols=183 Identities=15% Similarity=0.111 Sum_probs=127.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 038852 355 NSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFR 434 (851)
Q Consensus 355 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~ 434 (851)
+...+...+.+......-..+..++.+..+ +. ....+......+...|.+++|+..++.+++. .+-|...+.
T Consensus 273 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~-----~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~ 344 (484)
T COG4783 273 DFQLARARIRAKYEALPNQQAADLLAKRSK--RG-----GLAAQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLE 344 (484)
T ss_pred cHHHHHHHHHHHhccccccchHHHHHHHhC--cc-----chHHHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHH
Confidence 444555555544444443344444333322 11 3334444555666788889999999888775 344677777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 038852 435 TLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEG 514 (851)
Q Consensus 435 ~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g 514 (851)
..++.+.+.++.++|.+.|++++...+......++ +..+|.+.|+..+|+.++++....... |...|..|..+|...|
T Consensus 345 ~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~-~a~all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g 422 (484)
T COG4783 345 LAGDILLEANKAKEAIERLKKALALDPNSPLLQLN-LAQALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELG 422 (484)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHH-HHHHHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhC
Confidence 88888889999999999999988876554444443 788888999999999988888776544 7888899999999888
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhcC
Q 038852 515 LFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWGY 565 (851)
Q Consensus 515 ~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~~ 565 (851)
+..++.....+ .|...|++++|+.++...++.+
T Consensus 423 ~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 423 NRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred chHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHhc
Confidence 88887776655 4556788888888887776654
No 139
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.63 E-value=7.1e-06 Score=88.18 Aligned_cols=144 Identities=18% Similarity=0.214 Sum_probs=88.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 038852 144 AIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVD 223 (851)
Q Consensus 144 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~ 223 (851)
.....+...|.+++|+..++.+++.. ..|...+...+..+.+.++.++|.+.|++++...|. ....+..++.+|.+
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~--~~~l~~~~a~all~ 386 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAAQ--PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN--SPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--ccHHHHHHHHHHHh
Confidence 33334556666677776666665532 245555666666666667777777777766665544 34556666666666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHH
Q 038852 224 AGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQS 303 (851)
Q Consensus 224 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l 303 (851)
.|++.+|+.++++....... |...|..|..+|...|+..+|...+.+. |...|+++.|+..
T Consensus 387 ~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~ 447 (484)
T COG4783 387 GGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAIIF 447 (484)
T ss_pred cCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHH
Confidence 77777777666666666444 6666666777776666666665544332 4445666666666
Q ss_pred HHHHHHh
Q 038852 304 YKSLMER 310 (851)
Q Consensus 304 ~~~~~~~ 310 (851)
+..+.+.
T Consensus 448 l~~A~~~ 454 (484)
T COG4783 448 LMRASQQ 454 (484)
T ss_pred HHHHHHh
Confidence 6655544
No 140
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=8.3e-05 Score=73.41 Aligned_cols=163 Identities=18% Similarity=0.192 Sum_probs=78.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 038852 249 YNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLK 328 (851)
Q Consensus 249 ~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~ 328 (851)
|..++.+....|+.+.|..+++.+...-.. +..+...-+..+-..|.+++|+++|+.+++.++ .|.+++..-+.+.-.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddp-t~~v~~KRKlAilka 132 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGNYKEAIEYYESLLEDDP-TDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhchhhHHHHHHHHhccCc-chhHHHHHHHHHHHH
Confidence 344444455555555555555555444322 222222222334445555555555555555542 233444444444444
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhc
Q 038852 329 HEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCEN 408 (851)
Q Consensus 329 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~ 408 (851)
.|+--+|++-+.+.++.-.. |.++|..+...|...|++++|.-+++++.-..+. +...+..+.+.+.-.
T Consensus 133 ~GK~l~aIk~ln~YL~~F~~------D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~-----n~l~f~rlae~~Yt~ 201 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDKFMN------DQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF-----NPLYFQRLAEVLYTQ 201 (289)
T ss_pred cCCcHHHHHHHHHHHHHhcC------cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-----cHHHHHHHHHHHHHH
Confidence 55555555555555553222 5556666666666666666666666555444333 333344444443332
Q ss_pred C---CHHHHHHHHHHHHhC
Q 038852 409 E---MLEEAEKLLREISTK 424 (851)
Q Consensus 409 g---~~~~A~~l~~~m~~~ 424 (851)
| +++-|.++|.+.++.
T Consensus 202 gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 202 GGAENLELARKYYERALKL 220 (289)
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 2 334455555555543
No 141
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.54 E-value=0.0012 Score=70.17 Aligned_cols=408 Identities=13% Similarity=0.138 Sum_probs=232.1
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT 184 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~ 184 (851)
.+++.++.-|-..+..++.+++++++..- ..--..+|...+..-...+++.....+|.+.+.+. -+...|...+..
T Consensus 43 ~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~---l~ldLW~lYl~Y 118 (660)
T COG5107 43 LSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS---LNLDLWMLYLEY 118 (660)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh---ccHhHHHHHHHH
Confidence 57899999999999999999999998732 23345678888888888899999999999987642 356777777764
Q ss_pred HHHcCCh------HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHH---HcC------CHHHHHHHHHHHHhcCCCCCHHH
Q 038852 185 YCDEGKV------DEGMNVFRRIIETAPVGP-SSNTYRHLTKGFV---DAG------RIGEAVDLLRDMLSRQLGADSLV 248 (851)
Q Consensus 185 ~~~~g~~------~~A~~l~~~~~~~~~~~p-~~~~~~~Li~~~~---~~g------~~~~A~~l~~~m~~~g~~pd~~~ 248 (851)
..+.+.. ....+.|+-.+....+.| ....|+..+..+. ..| +++...+.|.+|+..-+.--...
T Consensus 119 IRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nlekl 198 (660)
T COG5107 119 IRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKL 198 (660)
T ss_pred HHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHHHH
Confidence 4443311 112333444443323322 2334555444332 233 34556666777665432211112
Q ss_pred HHH------HHHHH---HhcC----CHHHHHHHHHHHHh--cCCcc----chhh-----------HHHHHHHHHHcC---
Q 038852 249 YNN------LISGF---LNLG----NLEKANELFDELKQ--RCLVY----DGVV-----------NATFMEWWFNQG--- 295 (851)
Q Consensus 249 ~~~------Li~~~---~~~g----~~~~A~~~~~~~~~--~~~~~----d~~~-----------~~~li~~~~~~g--- 295 (851)
|.. -+.-. --.| -+-.|...+.++.. .|... +..+ |..+|+.-...|
T Consensus 199 W~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L 278 (660)
T COG5107 199 WKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKL 278 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCccc
Confidence 211 11111 0111 13445555555432 12110 1111 222222221111
Q ss_pred --C-H-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCC
Q 038852 296 --K-D-KEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGK 371 (851)
Q Consensus 296 --~-~-~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~ 371 (851)
+ . ....-+|+.++.. +.....+|......+...++-..|+...++.... .| ..-..+...|.-..+
T Consensus 279 ~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sp-------sL~~~lse~yel~nd 348 (660)
T COG5107 279 GGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SP-------SLTMFLSEYYELVND 348 (660)
T ss_pred CCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CC-------chheeHHHHHhhccc
Confidence 1 1 1111222332221 1122345555555556667777777766655432 12 111222223333333
Q ss_pred hHHHHHHHHHhc----------cCCCCCC----C-----------ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 038852 372 FSEAIETFKKAG----------THPKSKP----F-----------AMDVAGYNNIIARYCENEMLEEAEKLLREISTKS- 425 (851)
Q Consensus 372 ~~~A~~~~~~~~----------~~~~~~~----~-----------~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g- 425 (851)
.++...+|+++. +.....+ + .--..+|.+++....+..-++.|..+|-++.+.+
T Consensus 349 ~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~ 428 (660)
T COG5107 349 EEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGI 428 (660)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCC
Confidence 333322222210 0000000 0 0024557778888888888999999999999988
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC--HHHH
Q 038852 426 LSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPD--FLIY 503 (851)
Q Consensus 426 ~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd--~~~~ 503 (851)
+.+++.++++++..++ .|+...|.++|+--+..-. ++..+....+..++..++-+.|..+|++.+++ +.-+ ..+|
T Consensus 429 ~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~-d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy 505 (660)
T COG5107 429 VGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFP-DSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIY 505 (660)
T ss_pred CCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCC-CchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHH
Confidence 6677888999887665 6788999999988776543 33444455778888999999999999976654 2212 4578
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc
Q 038852 504 DVVVRGLCNEGLFDMSKDIVDQMMKY 529 (851)
Q Consensus 504 ~~ll~a~~~~g~~~~A~~~~~~m~~~ 529 (851)
..+|+--.+-|+...+..+-+++.+.
T Consensus 506 ~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 506 DKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 88888888899999988888888763
No 142
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.49 E-value=9.5e-05 Score=81.80 Aligned_cols=325 Identities=16% Similarity=0.100 Sum_probs=164.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 038852 173 PNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGP--------SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGA 244 (851)
Q Consensus 173 pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p--------~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p 244 (851)
|....|..|+......-+++.|+..|-++..-.+++. +...-. +..-.--|++++|.++|-+|-+++
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~--aei~~~~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQR--AEISAFYGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHh--HhHhhhhcchhHhhhhhhccchhh---
Confidence 5666677776666666666666666655433222210 000011 111122367777777776665542
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 038852 245 DSLVYNNLISGFLNLGNLEKANELFDELKQR-CLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLL 323 (851)
Q Consensus 245 d~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~-~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li 323 (851)
..+..+.+.||+-....+++.--.. +-..-...++.+.+.++...+|++|.++|...... ..++
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ 829 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQI 829 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHH
Confidence 2455666667776666655431110 00011345666777777777777777777654321 2356
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHH
Q 038852 324 EVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIA 403 (851)
Q Consensus 324 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~ 403 (851)
++|.+...+++.+.+.+.+-+ +....-.++.++...|.-++|.+.|-+... -...+.
T Consensus 830 ecly~le~f~~LE~la~~Lpe----------~s~llp~~a~mf~svGMC~qAV~a~Lr~s~-------------pkaAv~ 886 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTLPE----------DSELLPVMADMFTSVGMCDQAVEAYLRRSL-------------PKAAVH 886 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhcCc----------ccchHHHHHHHHHhhchHHHHHHHHHhccC-------------cHHHHH
Confidence 666666666665555444332 455666777777777777777777655421 112345
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--------------HHHHHHHHHcCCHHHHHHHHHHHHHcC----Cccc-
Q 038852 404 RYCENEMLEEAEKLLREISTKSLSPDVTTF--------------RTLIDAYLKVERIDDALELFNRMVESG----LRVV- 464 (851)
Q Consensus 404 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~--------------~~Ll~~~~~~g~~~~A~~~~~~m~~~~----~~~~- 464 (851)
.|...+.+.+|.++-.+..- |.+.++ ..-|..+.+.|+.-+|.+++.+|.+.. ..+.
T Consensus 887 tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr 962 (1189)
T KOG2041|consen 887 TCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLR 962 (1189)
T ss_pred HHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHH
Confidence 56666667676666554321 111111 112344555666556666666665431 1110
Q ss_pred -hhHH---HHHHHHH----------HHcCCHHHHHHHHHHHhhC-------CCCCCHHHHHH--HHHHHHhcCChHHHHH
Q 038852 465 -VSFG---TKVFNEL----------ITKGKVAECAPILTKMGEK-------DPKPDFLIYDV--VVRGLCNEGLFDMSKD 521 (851)
Q Consensus 465 -~~~~---~~L~~~~----------~~~g~~~~A~~ll~~m~~~-------~~~pd~~~~~~--ll~a~~~~g~~~~A~~ 521 (851)
...| ..|+.-+ .+.|..++|..+++...-. +.---...|.. |..--...|.++.|+.
T Consensus 963 ~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~ 1042 (1189)
T KOG2041|consen 963 LKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQ 1042 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHH
Confidence 0011 0111111 1356666666655543211 00011223433 3344456788888887
Q ss_pred HHHHHHHc-CCCCCHHHHHHHHHH
Q 038852 522 IVDQMMKY-GVGITPALQDFVRET 544 (851)
Q Consensus 522 ~~~~m~~~-g~~~~~~~~~~L~~~ 544 (851)
.--.+.++ ++-+..++|..|+.+
T Consensus 1043 Tal~L~DYEd~lpP~eiySllALa 1066 (1189)
T KOG2041|consen 1043 TALILSDYEDFLPPAEIYSLLALA 1066 (1189)
T ss_pred HHhhhccHhhcCCHHHHHHHHHHH
Confidence 76665543 344556666665443
No 143
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.49 E-value=0.00058 Score=71.32 Aligned_cols=286 Identities=13% Similarity=0.114 Sum_probs=137.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HcCChhHHHHHHHHHHHcCCCCCCHHH--HHHHHHHHHHcCCh
Q 038852 116 RAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMY--RAKRYDDAVALFKYFFDQADIVPNIVS--YNNLINTYCDEGKV 191 (851)
Q Consensus 116 ~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~l~~~~~~~~~~~pd~~~--~~~Li~~~~~~g~~ 191 (851)
-.||-..|.++-.+..+. +.-|-.-+..|+.+-. -.|++++|.+-|+.|++. |.... +..|.-..-+.|+.
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccH
Confidence 345666666555543311 2233333334443332 357777777777776542 22111 11222222345666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCCHHH--HHHHHHHHHhcCCHHHHHHH
Q 038852 192 DEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQ-LGADSLV--YNNLISGFLNLGNLEKANEL 268 (851)
Q Consensus 192 ~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~~--~~~Li~~~~~~g~~~~A~~~ 268 (851)
+.|..+-++.-+..+. -...+..++...+..|+++.|+++++.-+... +.+|..- -..|+.+-.
T Consensus 171 eaAr~yAe~Aa~~Ap~--l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA----------- 237 (531)
T COG3898 171 EAARHYAERAAEKAPQ--LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA----------- 237 (531)
T ss_pred HHHHHHHHHHHhhccC--CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH-----------
Confidence 6666666666665544 34466666666777777777777766554432 1112210 011111100
Q ss_pred HHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 038852 269 FDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQP 348 (851)
Q Consensus 269 ~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~ 348 (851)
+-.-..+...|.+.-.+..+.....-+ .-..-..+|.+.|+..++-.+++.+-+....
T Consensus 238 ---------------------~s~ldadp~~Ar~~A~~a~KL~pdlvP-aav~AAralf~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 238 ---------------------MSLLDADPASARDDALEANKLAPDLVP-AAVVAARALFRDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred ---------------------HHHhcCChHHHHHHHHHHhhcCCccch-HHHHHHHHHHhccchhhhhhHHHHHHhcCCC
Confidence 000011223333333333332221111 1122345566666666666666666665444
Q ss_pred CCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHh---ccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038852 349 PNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA---GTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKS 425 (851)
Q Consensus 349 p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 425 (851)
|+ +...|.+..--|.++.-++++ ....++ +.++...+..+-...|++..|..--+.+..
T Consensus 296 P~-----------ia~lY~~ar~gdta~dRlkRa~~L~slk~n-----naes~~~va~aAlda~e~~~ARa~Aeaa~r-- 357 (531)
T COG3898 296 PD-----------IALLYVRARSGDTALDRLKRAKKLESLKPN-----NAESSLAVAEAALDAGEFSAARAKAEAAAR-- 357 (531)
T ss_pred hH-----------HHHHHHHhcCCCcHHHHHHHHHHHHhcCcc-----chHHHHHHHHHHHhccchHHHHHHHHHHhh--
Confidence 42 122222222222233222222 111111 555566666666677777766666555553
Q ss_pred CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHc
Q 038852 426 LSPDVTTFRTLIDAYLK-VERIDDALELFNRMVES 459 (851)
Q Consensus 426 ~~pd~~~~~~Ll~~~~~-~g~~~~A~~~~~~m~~~ 459 (851)
..|....|..|.+.-.. .|+-.++..++.+.++.
T Consensus 358 ~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 358 EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 35666667666666544 37777777777777764
No 144
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.48 E-value=9.3e-06 Score=86.16 Aligned_cols=222 Identities=15% Similarity=0.220 Sum_probs=117.6
Q ss_pred ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---CC-CCHHHHHHHHHHHHHcCCHHH
Q 038852 154 RYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAP---VG-PSSNTYRHLTKGFVDAGRIGE 229 (851)
Q Consensus 154 ~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~---~~-p~~~~~~~Li~~~~~~g~~~~ 229 (851)
++++|..+|+++ +..|...|++++|.+.|.++.+..- .. .-...|...+.+|.+. ++++
T Consensus 30 ~~e~Aa~~y~~A----------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~ 92 (282)
T PF14938_consen 30 DYEEAADLYEKA----------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDE 92 (282)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHH
T ss_pred CHHHHHHHHHHH----------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHH
Confidence 666776666654 3456667777777777776643210 00 0011233333333333 5555
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHc-CCHHHHHHHHHHHH
Q 038852 230 AVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQ-GKDKEAMQSYKSLM 308 (851)
Q Consensus 230 A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~-g~~~~A~~l~~~~~ 308 (851)
|+++|+++ +..|...|++..|-+++.++- .+|... |++++|+++|+++.
T Consensus 93 Ai~~~~~A---------------~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~ 142 (282)
T PF14938_consen 93 AIECYEKA---------------IEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAA 142 (282)
T ss_dssp HHHHHHHH---------------HHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHH
T ss_pred HHHHHHHH---------------HHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHH
Confidence 55555443 344555566666555554433 334455 66777777776665
Q ss_pred HhcCCC-----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCH-HHHHHHHHHHHHcCChHHHHHHHHHh
Q 038852 309 ERNFRM-----TPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNS-DTFNIMVNECFKHGKFSEAIETFKKA 382 (851)
Q Consensus 309 ~~~~~~-----~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~-~~~~~L~~~~~~~g~~~~A~~~~~~~ 382 (851)
+.-... -..++..++..+.+.|++++|+++|+++......-+....+. ..|...+.++...||...|.+.|++.
T Consensus 143 ~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 143 ELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 431111 113556678888899999999999998877543322111112 23445566777788888888888887
Q ss_pred ccCCCCCCCccCHHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 038852 383 GTHPKSKPFAMDVAGYNNIIARYCE--NEMLEEAEKLLREIS 422 (851)
Q Consensus 383 ~~~~~~~~~~~d~~~~~~li~~~~~--~g~~~~A~~l~~~m~ 422 (851)
....+.-.-.........|+.+|-. ...+++|+.-|+.+.
T Consensus 223 ~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 223 CSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp GTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 6554332222234455556666543 234555555555443
No 145
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.41 E-value=1e-05 Score=75.46 Aligned_cols=96 Identities=20% Similarity=0.202 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038852 177 SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGF 256 (851)
Q Consensus 177 ~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~ 256 (851)
....++..+...|++++|++.|+++...++. +...|..++.++...|++++|+.+|+.+++.+.. +..++..++.+|
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~ 95 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPY--NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHH
Confidence 3444555555555666666666555554433 4455555555555556666666666555555433 445555555555
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 038852 257 LNLGNLEKANELFDELKQR 275 (851)
Q Consensus 257 ~~~g~~~~A~~~~~~~~~~ 275 (851)
...|++++|+..|+++++.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 5566666666655555554
No 146
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.41 E-value=0.00071 Score=75.10 Aligned_cols=352 Identities=11% Similarity=0.071 Sum_probs=172.5
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038852 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIV-SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRH 216 (851)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~-~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~ 216 (851)
+...|..||.---...+.+.+..+++.++.+. |... .|...+..=.+.|..+.+.++|++.+..-+. ++..|..
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky---Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~--SvdlW~~ 118 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKY---PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPL--SVDLWLS 118 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhC---ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhh--HHHHHHH
Confidence 45566666654444455566677777776543 3332 4556666666778888888888888776443 6667766
Q ss_pred HHHHHH-HcCCHHHHHHHHHHHHhc-C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHH
Q 038852 217 LTKGFV-DAGRIGEAVDLLRDMLSR-Q--LGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWF 292 (851)
Q Consensus 217 Li~~~~-~~g~~~~A~~l~~~m~~~-g--~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~ 292 (851)
....+. ..|+.+...+.|+.++.. | +. ....|...|..-...+++.....+|+++++.-. .-++....-|.
T Consensus 119 Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~-S~~lWdkyie~en~qks~k~v~~iyeRileiP~----~~~~~~f~~f~ 193 (577)
T KOG1258|consen 119 YLAFLKNNNGDPETLRDLFERAKSYVGLDFL-SDPLWDKYIEFENGQKSWKRVANIYERILEIPL----HQLNRHFDRFK 193 (577)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhcccchh-ccHHHHHHHHHHhccccHHHHHHHHHHHHhhhh----hHhHHHHHHHH
Confidence 655444 356777777777777764 1 22 345677777777777888888888888876522 22222222111
Q ss_pred H---c------CCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCCCCccCHH-----
Q 038852 293 N---Q------GKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKK-EEAQALFEQMLDNHQPPNIQAVNSD----- 357 (851)
Q Consensus 293 ~---~------g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~-~~A~~l~~~m~~~~~~p~~~~~~~~----- 357 (851)
+ . ...+++..+-....+. ......++. +......+...+....-+ ...
T Consensus 194 ~~l~~~~~~~l~~~d~~~~l~~~~~~~-------------~~~~~~~~~~e~~~~~v~~~~~~s~~l~----~~~~~l~~ 256 (577)
T KOG1258|consen 194 QLLNQNEEKILLSIDELIQLRSDVAER-------------SKITHSQEPLEELEIGVKDSTDPSKSLT----EEKTILKR 256 (577)
T ss_pred HHHhcCChhhhcCHHHHHHHhhhHHhh-------------hhcccccChhHHHHHHHhhccCccchhh----HHHHHHHH
Confidence 1 1 1111111111111110 000000111 111111111110000000 000
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCC----ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038852 358 TFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPF----AMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTF 433 (851)
Q Consensus 358 ~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~ 433 (851)
.....-.+|.......+.+..|+.....+ -..+ ..+...|+..+..-...|+++.+..+|++..-- +..=...|
T Consensus 257 ~~~~~~~~~~~s~~~~~kr~~fE~~Ikrp-Yfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efW 334 (577)
T KOG1258|consen 257 IVSIHEKVYQKSEEEEEKRWGFEEGIKRP-YFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFW 334 (577)
T ss_pred HHHHHHHHHHhhHhHHHHHHhhhhhcccc-ccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHH
Confidence 01111112223333334444444443221 1111 224566777777777777777777777766532 11123455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHh
Q 038852 434 RTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLI-YDVVVRGLCN 512 (851)
Q Consensus 434 ~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~-~~~ll~a~~~ 512 (851)
-..+.-....|+.+-|..++.+..+.-.+....+...-.......|+++.|..+++++.+.- |+.+. -..-+....+
T Consensus 335 iky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r 412 (577)
T KOG1258|consen 335 IKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERR 412 (577)
T ss_pred HHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHH
Confidence 55555555557777777776666655443333322212222334567777777777776653 33221 1112233345
Q ss_pred cCChHHHH
Q 038852 513 EGLFDMSK 520 (851)
Q Consensus 513 ~g~~~~A~ 520 (851)
.|..+.+.
T Consensus 413 ~~~~~~~~ 420 (577)
T KOG1258|consen 413 KGNLEDAN 420 (577)
T ss_pred hcchhhhh
Confidence 56666655
No 147
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.38 E-value=0.0047 Score=68.76 Aligned_cols=118 Identities=11% Similarity=0.078 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH-HcCChHHHHH
Q 038852 119 DLDAASYLARQAVFSRIRPT-VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYC-DEGKVDEGMN 196 (851)
Q Consensus 119 ~~~~A~~l~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~-~~g~~~~A~~ 196 (851)
+.+.+..++..++.. .|. --.|......-.+.|..+.++++|++.+. ++...+..|...+..+. ..|+-+...+
T Consensus 60 ~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~--aip~SvdlW~~Y~~f~~n~~~d~~~lr~ 135 (577)
T KOG1258|consen 60 DVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ--AIPLSVDLWLSYLAFLKNNNGDPETLRD 135 (577)
T ss_pred HHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHhccCCCHHHHHH
Confidence 345555566665533 233 34566777777789999999999999876 45566777776665444 4578888899
Q ss_pred HHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 038852 197 VFRRIIETAPVG-PSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSR 240 (851)
Q Consensus 197 l~~~~~~~~~~~-p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 240 (851)
.|+++....|.. .....|...|..-...+++.....+|+++++.
T Consensus 136 ~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 136 LFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 999998876542 23457888888888899999999999999876
No 148
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.37 E-value=7.8e-06 Score=76.30 Aligned_cols=112 Identities=14% Similarity=0.087 Sum_probs=81.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038852 197 VFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRC 276 (851)
Q Consensus 197 l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~ 276 (851)
.|+++++.++. +......++..+...|++++|++.|+++...+.. +...|..++.+|.+.|++++|..+|+.+++.+
T Consensus 5 ~~~~~l~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLDSE--QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCChh--hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45666665544 4556677777888888888888888888776554 67778888888888888888888888877765
Q ss_pred CccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 038852 277 LVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNF 312 (851)
Q Consensus 277 ~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~ 312 (851)
.. +...+..+..+|...|++++|+..|+.+++.+.
T Consensus 82 p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 82 PD-DPRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 44 556666667777777777777777777766653
No 149
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.37 E-value=0.00011 Score=77.94 Aligned_cols=186 Identities=12% Similarity=0.152 Sum_probs=86.2
Q ss_pred ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-C----HHHHHHHHHHHHhcCCHHH
Q 038852 190 KVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGA-D----SLVYNNLISGFLNLGNLEK 264 (851)
Q Consensus 190 ~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p-d----~~~~~~Li~~~~~~g~~~~ 264 (851)
++++|.++|+++ +..|...+++++|.+.|.++.+..... + ...|...+.+|.+. ++++
T Consensus 30 ~~e~Aa~~y~~A----------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~ 92 (282)
T PF14938_consen 30 DYEEAADLYEKA----------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDE 92 (282)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHH
T ss_pred CHHHHHHHHHHH----------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHH
Confidence 666666666655 334566677777777776664421110 1 12233333333333 5555
Q ss_pred HHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHH
Q 038852 265 ANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKH-EKKEEAQALFEQML 343 (851)
Q Consensus 265 A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~-g~~~~A~~l~~~m~ 343 (851)
|+++|+++.+ .|...|++..|-+++ ..++..|... |++++|+++|+++.
T Consensus 93 Ai~~~~~A~~---------------~y~~~G~~~~aA~~~---------------~~lA~~ye~~~~d~e~Ai~~Y~~A~ 142 (282)
T PF14938_consen 93 AIECYEKAIE---------------IYREAGRFSQAAKCL---------------KELAEIYEEQLGDYEKAIEYYQKAA 142 (282)
T ss_dssp HHHHHHHHHH---------------HHHHCT-HHHHHHHH---------------HHHHHHHCCTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHH---------------HHHhcCcHHHHHHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555544433 366666666665443 3355566666 77888888777776
Q ss_pred HcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCC-CccCHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 038852 344 DNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKP-FAMDVA-GYNNIIARYCENEMLEEAEKLLREI 421 (851)
Q Consensus 344 ~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~d~~-~~~~li~~~~~~g~~~~A~~l~~~m 421 (851)
+.-..-+....-..++..++.++.+.|++++|+++|+++........ ...++. .|...+.++...||...|.+.|++.
T Consensus 143 ~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 143 ELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 52111000000123445555556666666666666655543321111 111111 1222333444455555555555555
Q ss_pred H
Q 038852 422 S 422 (851)
Q Consensus 422 ~ 422 (851)
.
T Consensus 223 ~ 223 (282)
T PF14938_consen 223 C 223 (282)
T ss_dssp G
T ss_pred H
Confidence 4
No 150
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.36 E-value=0.00062 Score=75.61 Aligned_cols=144 Identities=15% Similarity=0.054 Sum_probs=87.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHH------HHHHH
Q 038852 111 VQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYN------NLINT 184 (851)
Q Consensus 111 l~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~------~Li~~ 184 (851)
...++..-.+++|.+..+. .|....|..|.......-.++.|...|-+.-+-.|++---..-. --+..
T Consensus 670 ~~~Lve~vgledA~qfiEd------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei 743 (1189)
T KOG2041|consen 670 VMNLVEAVGLEDAIQFIED------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEI 743 (1189)
T ss_pred HHHHHHHhchHHHHHHHhc------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhH
Confidence 3445555556666665543 67888999888888888888888888877644333321100000 01112
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCH
Q 038852 185 YCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG--ADSLVYNNLISGFLNLGNL 262 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~--pd~~~~~~Li~~~~~~g~~ 262 (851)
-.--|++++|+++|-++-+++ ..|..+.+.|++-....+++.--. +.. .-...|+.++..++....|
T Consensus 744 ~~~~g~feeaek~yld~drrD----------LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~W 812 (1189)
T KOG2041|consen 744 SAFYGEFEEAEKLYLDADRRD----------LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEW 812 (1189)
T ss_pred hhhhcchhHhhhhhhccchhh----------hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHH
Confidence 223488999999998775442 245667777888777776653211 111 1125677777777777777
Q ss_pred HHHHHHHHH
Q 038852 263 EKANELFDE 271 (851)
Q Consensus 263 ~~A~~~~~~ 271 (851)
++|.++|..
T Consensus 813 e~A~~yY~~ 821 (1189)
T KOG2041|consen 813 EEAAKYYSY 821 (1189)
T ss_pred HHHHHHHHh
Confidence 777777754
No 151
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.35 E-value=0.0029 Score=66.23 Aligned_cols=289 Identities=13% Similarity=0.067 Sum_probs=155.8
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038852 188 EGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKG--FVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKA 265 (851)
Q Consensus 188 ~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~--~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A 265 (851)
.||-..|.++-.+..+. +.-|-..+..|+.+ -.-.|++++|.+-|+.|+.. .+.-..-+..|.-..-+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHH
Confidence 35555555555444322 11133333333332 22356666666666666542 000011111222222345566666
Q ss_pred HHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCCHH--HHHHHHHHH---HhCCCHHHHHHHH
Q 038852 266 NELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNF-RMTPA--TCNTLLEVL---LKHEKKEEAQALF 339 (851)
Q Consensus 266 ~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-~~~~~--~~~~Li~~~---~~~g~~~~A~~l~ 339 (851)
..+-++.-+.... -...+...++..+..|+++.|+++++.-+...+ ..+.. .-..|+.+- .-.-+...|.+.-
T Consensus 174 r~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 6555555444332 234445555556666666666666655443221 11111 111122111 1123466677666
Q ss_pred HHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 340 EQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLR 419 (851)
Q Consensus 340 ~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~ 419 (851)
.+..+ +.|++ .-.-..-..+|++.|++.++-.+++.+-+..+ ...++. +..+.+.|+ .+++-++
T Consensus 253 ~~a~K--L~pdl----vPaav~AAralf~d~~~rKg~~ilE~aWK~eP------HP~ia~--lY~~ar~gd--ta~dRlk 316 (531)
T COG3898 253 LEANK--LAPDL----VPAAVVAARALFRDGNLRKGSKILETAWKAEP------HPDIAL--LYVRARSGD--TALDRLK 316 (531)
T ss_pred HHHhh--cCCcc----chHHHHHHHHHHhccchhhhhhHHHHHHhcCC------ChHHHH--HHHHhcCCC--cHHHHHH
Confidence 66655 45543 22445567889999999999999999865433 333332 223344554 3444444
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHH-cCCHHHHHHHHHHHhhCCC
Q 038852 420 EISTK-SLSP-DVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELIT-KGKVAECAPILTKMGEKDP 496 (851)
Q Consensus 420 ~m~~~-g~~p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~-~g~~~~A~~ll~~m~~~~~ 496 (851)
+..+. .+++ +......+..+-...|++..|..--+.+.+. .|...+|..|.++-.. .||-.++...+-+.++.--
T Consensus 317 Ra~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APr 394 (531)
T COG3898 317 RAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPR 394 (531)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCC
Confidence 33221 1233 5677778888889999999998877777664 4567777767776554 4999999999999887643
Q ss_pred CC
Q 038852 497 KP 498 (851)
Q Consensus 497 ~p 498 (851)
.|
T Consensus 395 dP 396 (531)
T COG3898 395 DP 396 (531)
T ss_pred CC
Confidence 44
No 152
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.31 E-value=3.1e-05 Score=84.52 Aligned_cols=122 Identities=18% Similarity=0.164 Sum_probs=69.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038852 180 NLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL 259 (851)
Q Consensus 180 ~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~ 259 (851)
.|+..+...++++.|+++|+++.+.++ + ....|++++...++-.+|++++.+.++.... |...+...+..|.+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~p---e--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDP---E--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCC---c--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 444444455566666666666655432 2 3444555555566666666666666654333 555555555666666
Q ss_pred CCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038852 260 GNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLM 308 (851)
Q Consensus 260 g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~ 308 (851)
++++.|+++.+++.+..+. +..+|..|+.+|.+.|++++|+..++.+-
T Consensus 248 ~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6666666666666655443 45566666666666666666666655543
No 153
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.27 E-value=0.00024 Score=73.32 Aligned_cols=241 Identities=12% Similarity=0.081 Sum_probs=122.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH----cCCCCCCHHHHHHHHHHH
Q 038852 112 QSLIRAGDLDAASYLARQAVFSRI--RPTVFTCNAIIAAMYRAKRYDDAVALFKYFFD----QADIVPNIVSYNNLINTY 185 (851)
Q Consensus 112 ~~l~~~g~~~~A~~l~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~----~~~~~pd~~~~~~Li~~~ 185 (851)
..+....+.+.|+..+.+.+..-- .--..++..+..+..+.|.+++++..--..+. ...-..--..|..|.+++
T Consensus 14 ~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~ 93 (518)
T KOG1941|consen 14 LQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSN 93 (518)
T ss_pred HhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777766553211 11123455566666677777665543221111 100001123455555555
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHHH
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGP---SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG-----ADSLVYNNLISGFL 257 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p---~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~-----pd~~~~~~Li~~~~ 257 (851)
.+..++.+++.+-...+...+..+ -.....++..++...+-++++++.|+.+.+.-.. ....++..|...|.
T Consensus 94 e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~ 173 (518)
T KOG1941|consen 94 EKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFA 173 (518)
T ss_pred HHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHH
Confidence 555566666655555544433222 1123334555555566666666666666543211 11235566666666
Q ss_pred hcCCHHHHHHHHHHHHhc----CCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHH
Q 038852 258 NLGNLEKANELFDELKQR----CLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKE 333 (851)
Q Consensus 258 ~~g~~~~A~~~~~~~~~~----~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~ 333 (851)
...|+++|.-+..++.+. ++. |.... | .......|..++...|++.
T Consensus 174 ~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~k-------------------y----------r~~~lyhmaValR~~G~Lg 223 (518)
T KOG1941|consen 174 QLKDYEKALFFPCKAAELVNSYGLK-DWSLK-------------------Y----------RAMSLYHMAVALRLLGRLG 223 (518)
T ss_pred HHHhhhHHhhhhHhHHHHHHhcCcC-chhHH-------------------H----------HHHHHHHHHHHHHHhcccc
Confidence 666666666555444332 111 10000 0 0012233556667777777
Q ss_pred HHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 038852 334 EAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382 (851)
Q Consensus 334 ~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 382 (851)
+|.+..+++.+..+.-............++++|...|+.|.|+.-|+.+
T Consensus 224 dA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 224 DAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred cHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 7777777665432222211123445566778888888888888777766
No 154
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.27 E-value=3.6e-05 Score=72.80 Aligned_cols=117 Identities=16% Similarity=0.249 Sum_probs=54.0
Q ss_pred cCChHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHH
Q 038852 188 EGKVDEGMNVFRRIIETAPVG-PSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGAD--SLVYNNLISGFLNLGNLEK 264 (851)
Q Consensus 188 ~g~~~~A~~l~~~~~~~~~~~-p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~~~~~Li~~~~~~g~~~~ 264 (851)
.++.+.+.+.++.+.+..+.. ........++..+...|++++|.+.|+.+++....++ ......|..++...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555555555544331 0122333344555555666666666665555432211 1233344555555555555
Q ss_pred HHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHH
Q 038852 265 ANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKS 306 (851)
Q Consensus 265 A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 306 (851)
|+..++.+.... .....+..++++|.+.|++++|+..|+.
T Consensus 104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555554422211 1223333444444444444444444443
No 155
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.25 E-value=2e-05 Score=73.31 Aligned_cols=99 Identities=10% Similarity=0.062 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLIS 254 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~ 254 (851)
......+...+...|++++|.++|+.+...++. +...|..|+.++-..|++++|++.|..+...++. |...+-.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~--~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~ 111 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW--SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 344556666677888888888888888887766 7778888888888888888888888888887765 7788888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC
Q 038852 255 GFLNLGNLEKANELFDELKQRC 276 (851)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~~~~~ 276 (851)
++...|+.+.|++.|+.++...
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 8888888888888888777653
No 156
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.23 E-value=5.5e-05 Score=82.55 Aligned_cols=121 Identities=21% Similarity=0.243 Sum_probs=67.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHH
Q 038852 286 TFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNE 365 (851)
Q Consensus 286 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~ 365 (851)
.|+..+...++++.|+++|+++.+.++ .....|+.++...++..+|++++.+.+..... +...+..-+..
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~p----ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~------d~~LL~~Qa~f 243 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDP----EVAVLLARVYLLMNEEVEAIRLLNEALKENPQ------DSELLNLQAEF 243 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCC----cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC------CHHHHHHHHHH
Confidence 334444445555555555555555543 23334555555555666666666666543221 45555555566
Q ss_pred HHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038852 366 CFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREI 421 (851)
Q Consensus 366 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 421 (851)
|.+.++++.|+++.+++....+. +..+|..|+.+|...|++++|+..++.+
T Consensus 244 Ll~k~~~~lAL~iAk~av~lsP~-----~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELSPS-----EFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhCch-----hHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 66666666666666666555444 5556666666666666666666655544
No 157
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.22 E-value=3.8e-05 Score=72.64 Aligned_cols=128 Identities=17% Similarity=0.240 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC--HHHHHHH
Q 038852 141 TCNAIIAAMYRAKRYDDAVALFKYFFDQADIVP-NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS--SNTYRHL 217 (851)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~p-d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~--~~~~~~L 217 (851)
.|..++..+ ..++...+.+.++.+++..+-.+ .......+...+...|++++|...|+.++...+. ++ ..+...|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d-~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPD-PELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHH
Confidence 344444444 47888888888888877544221 1345566778888899999999999999886522 12 2355667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038852 218 TKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDEL 272 (851)
Q Consensus 218 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~ 272 (851)
+.++...|++++|+..++...... .....+..++++|.+.|++++|+..|++.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 888889999999999997744332 24567778899999999999999998865
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.21 E-value=8.4e-05 Score=72.58 Aligned_cols=93 Identities=11% Similarity=0.102 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS-SNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~-~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
...+..++..|...|++++|+..|+++++..+..++ ...|..++.++.+.|++++|+.+|+++++.... +...+..++
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 345556666666666666666666666654332222 345666666666666666666666666665433 455555666
Q ss_pred HHHHhcCCHHHHHHH
Q 038852 254 SGFLNLGNLEKANEL 268 (851)
Q Consensus 254 ~~~~~~g~~~~A~~~ 268 (851)
.+|...|+...+..-
T Consensus 114 ~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 114 VIYHKRGEKAEEAGD 128 (172)
T ss_pred HHHHHcCChHhHhhC
Confidence 666666655554433
No 159
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.20 E-value=0.00016 Score=79.49 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038852 231 VDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDE 271 (851)
Q Consensus 231 ~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~ 271 (851)
+.-++++..+|..|+... ++..|+-.|.+.+|.++|.+
T Consensus 620 i~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 620 ISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 344566777776666543 45566667777777777654
No 160
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.17 E-value=0.01 Score=59.57 Aligned_cols=227 Identities=18% Similarity=0.167 Sum_probs=132.7
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 038852 152 AKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAV 231 (851)
Q Consensus 152 ~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~ 231 (851)
.+.+..+...+..++...........+..+...+...+++..+...+...............+..+...+...+++.+++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45666666666666443221112456667777778888888888888777652001225556777777777788888888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcCC--ccchhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038852 232 DLLRDMLSRQLGADSLVYNNLIS-GFLNLGNLEKANELFDELKQRCL--VYDGVVNATFMEWWFNQGKDKEAMQSYKSLM 308 (851)
Q Consensus 232 ~l~~~m~~~g~~pd~~~~~~Li~-~~~~~g~~~~A~~~~~~~~~~~~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~ 308 (851)
+.+.......... ......... ++...|+++.|...|+++..... ......+......+...+++++++..+..+.
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8888887754442 222333333 67777888888888887755322 1123333333344556666777777776666
Q ss_pred HhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccC
Q 038852 309 ERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTH 385 (851)
Q Consensus 309 ~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~ 385 (851)
..........+..+...+...++++.|...+..+...... ....+..+...+...+.++++...+.+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD------NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc------cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6543322345555666666666667777766666653221 1234444444444555566666666655443
No 161
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.13 E-value=0.021 Score=61.38 Aligned_cols=409 Identities=13% Similarity=0.148 Sum_probs=212.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCChhHHHHHHHHHHHc-CCCC------------CC
Q 038852 110 RVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAA--MYRAKRYDDAVALFKYFFDQ-ADIV------------PN 174 (851)
Q Consensus 110 ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~l~~~~~~~-~~~~------------pd 174 (851)
+++++ -.++++.....+....+... ...|..|..+ +++.+.+++|++.|...... .+.. .|
T Consensus 52 ilnAf-fl~nld~Me~~l~~l~~~~~---~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~d 127 (549)
T PF07079_consen 52 ILNAF-FLNNLDLMEKQLMELRQQFG---KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSD 127 (549)
T ss_pred HHHHH-HHhhHHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhH
Confidence 34444 34555555544444333221 1223333333 45889999999998876443 1111 12
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHc--------CC-------HHHHHHHHHH
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETA---PVGPSSNTYRHLTKGFVDA--------GR-------IGEAVDLLRD 236 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~---~~~p~~~~~~~Li~~~~~~--------g~-------~~~A~~l~~~ 236 (851)
...-+..+.++...|++.+++.+++++++.- ...-+..+|+.++-.+.+. .. ++.++-+.++
T Consensus 128 f~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kk 207 (549)
T PF07079_consen 128 FFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKK 207 (549)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHH
Confidence 2333677888999999999999999987652 1124778888865555432 11 2222222233
Q ss_pred HHhc------CCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCccchh-hHHHHHHHHHHcCCHHHHHHHHHHH
Q 038852 237 MLSR------QLGADSLVYNNLISGFLNLG--NLEKANELFDELKQRCLVYDGV-VNATFMEWWFNQGKDKEAMQSYKSL 307 (851)
Q Consensus 237 m~~~------g~~pd~~~~~~Li~~~~~~g--~~~~A~~~~~~~~~~~~~~d~~-~~~~li~~~~~~g~~~~A~~l~~~~ 307 (851)
|... .+.|.......++....-.- ...--+.+++.....-+.|+.. +...+...+.. +.+++..+.+.+
T Consensus 208 i~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~i 285 (549)
T PF07079_consen 208 IHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAI 285 (549)
T ss_pred HHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHH
Confidence 3222 12233333333333332221 1222223333333333333322 22333333333 444444444443
Q ss_pred HHhcCC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCc-----cCHHHHHHHHHHHH-H---cCChHH
Q 038852 308 MERNFR----MTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQA-----VNSDTFNIMVNECF-K---HGKFSE 374 (851)
Q Consensus 308 ~~~~~~----~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~-----~~~~~~~~L~~~~~-~---~g~~~~ 374 (851)
....+. --..++..++...++.++..+|...+.-+.. ..|+... ....+ +-++.+ . .-+..+
T Consensus 286 a~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~---lq~Iv~~DD~~~Tklr~ 360 (549)
T PF07079_consen 286 ASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI--LDPRISVSEKLLLSPKV---LQDIVCEDDESYTKLRD 360 (549)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHH---HHHHHhcchHHHHHHHH
Confidence 322110 0125677888888899999999888876654 3332110 01111 222222 1 112233
Q ss_pred HHHHHHHhccCCCCCCCccCHHHH-HHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHH---cCC
Q 038852 375 AIETFKKAGTHPKSKPFAMDVAGY-NNIIARYCENEM-LEEAEKLLREISTKSLSPDVTTFRTLI----DAYLK---VER 445 (851)
Q Consensus 375 A~~~~~~~~~~~~~~~~~~d~~~~-~~li~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~~~~~Ll----~~~~~---~g~ 445 (851)
-+.+++.+...+.++- -.+.| ..-+.-+-+.|. -++|+++++.++.-. .-|...-+.+. ..|.. ...
T Consensus 361 yL~lwe~~qs~DiDrq---QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~ 436 (549)
T PF07079_consen 361 YLNLWEEIQSYDIDRQ---QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHA 436 (549)
T ss_pred HHHHHHHHHhhcccHH---HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3445555533322110 11222 223344555666 788999999888642 22444333322 22222 233
Q ss_pred HHHHHHHHHHHHHcCCccchhH----HHHHHH--HHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 038852 446 IDDALELFNRMVESGLRVVVSF----GTKVFN--ELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMS 519 (851)
Q Consensus 446 ~~~A~~~~~~m~~~~~~~~~~~----~~~L~~--~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A 519 (851)
+.+-+++-+-+.+.|+.+...- -+.|.+ .+...|++.++.-.-.-+.+ +.|+..+|..+.-++....++++|
T Consensus 437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA 514 (549)
T PF07079_consen 437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEA 514 (549)
T ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHH
Confidence 4444555555556677663332 233322 34568999999876666655 578999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHH
Q 038852 520 KDIVDQMMKYGVGITPALQDF 540 (851)
Q Consensus 520 ~~~~~~m~~~g~~~~~~~~~~ 540 (851)
.+++.++ +++.++++.
T Consensus 515 ~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 515 WEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHHHHhC-----CCchhhHHH
Confidence 9999874 455555554
No 162
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.12 E-value=3.7e-05 Score=65.52 Aligned_cols=91 Identities=25% Similarity=0.438 Sum_probs=40.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038852 180 NLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL 259 (851)
Q Consensus 180 ~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~ 259 (851)
.++..+...|++++|+.+|+++++..+. +..++..++.++...+++++|+++|+++++.... +..++..++.++...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPD--NADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHH
Confidence 3444444444444444444444443322 2234444444444444444454444444443322 233444444444444
Q ss_pred CCHHHHHHHHHHHH
Q 038852 260 GNLEKANELFDELK 273 (851)
Q Consensus 260 g~~~~A~~~~~~~~ 273 (851)
|++++|.+.++++.
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 44444444444443
No 163
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.11 E-value=0.00011 Score=66.59 Aligned_cols=100 Identities=18% Similarity=0.284 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 038852 142 CNAIIAAMYRAKRYDDAVALFKYFFDQADIVP-NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGP-SSNTYRHLTK 219 (851)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~p-d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p-~~~~~~~Li~ 219 (851)
+..++..+.+.|++++|++.|+.++...+-.+ ....+..++.++.+.|++++|+.+|++++...+..+ ...++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34455555556666666666666554322111 123444555666666666666666666655443321 1334555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcC
Q 038852 220 GFVDAGRIGEAVDLLRDMLSRQ 241 (851)
Q Consensus 220 ~~~~~g~~~~A~~l~~~m~~~g 241 (851)
++...|++++|+.+|+++++..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHC
Confidence 6666666666666666666553
No 164
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.10 E-value=0.00062 Score=70.18 Aligned_cols=183 Identities=15% Similarity=0.114 Sum_probs=87.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038852 178 YNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSS-NTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGF 256 (851)
Q Consensus 178 ~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~-~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~ 256 (851)
+...+..+...|++++|++.|++++...+..+-. .+...++.+|.+.+++++|+..|++.++..+.-...-+...+.+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 3344445556667777777777666665542111 122345566666667777777776666654332222222222222
Q ss_pred H--hcC---------------C---HHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCH
Q 038852 257 L--NLG---------------N---LEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTP 316 (851)
Q Consensus 257 ~--~~g---------------~---~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~ 316 (851)
+ ..+ | ..+|+..|+++++.-+. ..-..+|...+..+.+.--
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~---------------S~ya~~A~~rl~~l~~~la---- 175 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPN---------------SQYTTDATKRLVFLKDRLA---- 175 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcC---------------ChhHHHHHHHHHHHHHHHH----
Confidence 1 111 1 12344444444443222 1112222222222211100
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 038852 317 ATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382 (851)
Q Consensus 317 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 382 (851)
..-..++..|.+.|++..|+.-|+.+++.-.... ...++...++.+|.+.|..++|.++...+
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~---~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQ---ATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCc---hHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 0111355666667777777777777766422211 14455666666666666666666655544
No 165
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.09 E-value=0.0011 Score=68.46 Aligned_cols=185 Identities=11% Similarity=0.089 Sum_probs=102.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHH
Q 038852 210 SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLV---YNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNAT 286 (851)
Q Consensus 210 ~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~---~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~ 286 (851)
+...+...+..+...|++++|++.|++++...... ... ...++.+|.+.+++++|...|+++++..+.....-+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 44455556677788899999999999998875542 322 24577888899999999999999888765533333333
Q ss_pred HHHHHH--HcC---------------C---HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 038852 287 FMEWWF--NQG---------------K---DKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNH 346 (851)
Q Consensus 287 li~~~~--~~g---------------~---~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~ 346 (851)
.+.+.+ ..+ | ..+|++.|+++++. |=...-..+|...+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH-
Confidence 332222 111 1 12233333333333 22222233333333333221
Q ss_pred CCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038852 347 QPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREI 421 (851)
Q Consensus 347 ~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 421 (851)
-..--..++..|.+.|++..|+.-|+.+.+..+..+. .......++.+|...|..++|.++...+
T Consensus 174 --------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~--~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 174 --------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQA--TRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred --------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCch--HHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 0112234556666677777676666666665554332 3344555666666666666666655544
No 166
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.09 E-value=5.7e-05 Score=73.47 Aligned_cols=82 Identities=13% Similarity=0.026 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGP-SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p-~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
...|..++..+...|++++|+..|++++...+... ...+|..++.+|...|++++|++.|+++++.... ...++..++
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHH
Confidence 34455555555555666666666666554432211 1235555566666666666666666665554322 334444444
Q ss_pred HHHH
Q 038852 254 SGFL 257 (851)
Q Consensus 254 ~~~~ 257 (851)
.++.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
No 167
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.09 E-value=9.1e-05 Score=75.24 Aligned_cols=92 Identities=18% Similarity=0.198 Sum_probs=65.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHH
Q 038852 219 KGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDK 298 (851)
Q Consensus 219 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~ 298 (851)
.-+.+.++|.+|+..|.++++.... |.+.|..-..+|.++|.++.|++-.+..+..+.. ....|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 3455677888888888888877665 7777888888888888888888877777776554 4556666666666666666
Q ss_pred HHHHHHHHHHHhcC
Q 038852 299 EAMQSYKSLMERNF 312 (851)
Q Consensus 299 ~A~~l~~~~~~~~~ 312 (851)
+|++.|++.++.++
T Consensus 167 ~A~~aykKaLeldP 180 (304)
T KOG0553|consen 167 EAIEAYKKALELDP 180 (304)
T ss_pred HHHHHHHhhhccCC
Confidence 66666666666543
No 168
>PF12854 PPR_1: PPR repeat
Probab=98.08 E-value=5.4e-06 Score=56.29 Aligned_cols=32 Identities=41% Similarity=0.950 Sum_probs=19.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 038852 170 DIVPNIVSYNNLINTYCDEGKVDEGMNVFRRI 201 (851)
Q Consensus 170 ~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~ 201 (851)
|+.||.++|++||.+|++.|++++|+++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45556666666666666666666666666554
No 169
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.0011 Score=65.68 Aligned_cols=138 Identities=13% Similarity=0.057 Sum_probs=96.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHH
Q 038852 282 VVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNI 361 (851)
Q Consensus 282 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~ 361 (851)
.+.+.++.++...|++.-.+..++++++.+.+.++.....|+..-...||.+.|..+|++..+..-+-+....+..+..+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 35556666677777888888888888887777777888888888888888888888888776543332221123334445
Q ss_pred HHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038852 362 MVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTK 424 (851)
Q Consensus 362 L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 424 (851)
....|.-.+++.+|...|+++...++. |....|.-+.++...|+..+|++.++.|+..
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~-----~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPR-----NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCC-----chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 555666777788888888877766555 5666666666666678888888888888764
No 170
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.06 E-value=0.002 Score=76.42 Aligned_cols=82 Identities=20% Similarity=0.262 Sum_probs=40.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCh
Q 038852 437 IDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLF 516 (851)
Q Consensus 437 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~ 516 (851)
+.+|..+|++.+|+.+..++...... ...+...|+.-+...++.-+|.+++.+.... ....+..|++...|
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~ 1042 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEW 1042 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHH
Confidence 34444555555555554444321100 1111123555556666666666666665442 12234455666667
Q ss_pred HHHHHHHHHHH
Q 038852 517 DMSKDIVDQMM 527 (851)
Q Consensus 517 ~~A~~~~~~m~ 527 (851)
++|+.+.....
T Consensus 1043 ~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1043 EEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHhcc
Confidence 77766655443
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.05 E-value=0.00022 Score=69.56 Aligned_cols=95 Identities=14% Similarity=0.127 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHH
Q 038852 210 SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGAD--SLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATF 287 (851)
Q Consensus 210 ~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l 287 (851)
....+..++..+...|++++|+.+|+++++....++ ...+..++.+|.+.|++++|+.+|+++++.... +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 455788888889999999999999999987654332 367888889999999999999999988876544 45566666
Q ss_pred HHHHHHcCCHHHHHHHHH
Q 038852 288 MEWWFNQGKDKEAMQSYK 305 (851)
Q Consensus 288 i~~~~~~g~~~~A~~l~~ 305 (851)
+.+|...|+...+...++
T Consensus 113 g~~~~~~g~~~~a~~~~~ 130 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQD 130 (172)
T ss_pred HHHHHHcCChHhHhhCHH
Confidence 777777777665554443
No 172
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.0029 Score=62.87 Aligned_cols=135 Identities=11% Similarity=0.092 Sum_probs=102.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHH-----H
Q 038852 248 VYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNT-----L 322 (851)
Q Consensus 248 ~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~-----L 322 (851)
+.+.++.++.-.|++.-...++.++++++...+......|+.+-...||.+.|..+|+++.+..-+.+..+.+. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 45567777777888888888888888887777888888888888999999999999987776544444333333 3
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCC
Q 038852 323 LEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKS 388 (851)
Q Consensus 323 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~ 388 (851)
...|.-.+++.+|...|.+++..+.. +....+.-+.+..-.|+..+|++.++.+....+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~------~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR------NAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC------chhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 44566678889999999888875433 6667777777778889999999999998766443
No 173
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=0.032 Score=60.30 Aligned_cols=451 Identities=14% Similarity=0.092 Sum_probs=233.8
Q ss_pred cHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHH-HcCChhHHHHHHHHHHHcCCCCCCH-----
Q 038852 106 NLHNRVQSLIRAG--DLDAASYLARQAVFSRIRPT--VFTCNAIIAAMY-RAKRYDDAVALFKYFFDQADIVPNI----- 175 (851)
Q Consensus 106 ~l~~ll~~l~~~g--~~~~A~~l~~~~~~~~~~~~--~~~~~~li~~~~-~~g~~~~A~~l~~~~~~~~~~~pd~----- 175 (851)
.+..++..+...| ++..+++.++......+..- +.+...|+..+. -.++++.|..-++++.....--|+.
T Consensus 9 aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf 88 (629)
T KOG2300|consen 9 ALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKF 88 (629)
T ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhh
Confidence 3455666666777 78888888887665443222 223333444433 3678888988888876543333332
Q ss_pred HHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038852 176 VSYNNLINTYCDEG-KVDEGMNVFRRIIETAPVGPS--SNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNL 252 (851)
Q Consensus 176 ~~~~~Li~~~~~~g-~~~~A~~l~~~~~~~~~~~p~--~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~L 252 (851)
.++..|...|.... .+..|..++++.++.....|- .....-|+..+.-..|+..|.+++.--.+. -.+-...|..+
T Consensus 89 ~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~s-Ad~~~~~ylr~ 167 (629)
T KOG2300|consen 89 QAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAES-ADHICFPYLRM 167 (629)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccc-cchhhhHHHHH
Confidence 35677888888776 788999999999887544331 112234666777788888888874322111 11112223222
Q ss_pred HHH------HHhcCC---HHHHHHHHHHHHhcCCccchh------hH--HHHHHHHHHcCCHHHHHHHHHHHHHh---cC
Q 038852 253 ISG------FLNLGN---LEKANELFDELKQRCLVYDGV------VN--ATFMEWWFNQGKDKEAMQSYKSLMER---NF 312 (851)
Q Consensus 253 i~~------~~~~g~---~~~A~~~~~~~~~~~~~~d~~------~~--~~li~~~~~~g~~~~A~~l~~~~~~~---~~ 312 (851)
+.. .....| ++++....+.|.+. ..+|.. +| ..-+..|...|+...+...++.+.+. ..
T Consensus 168 ~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtis 246 (629)
T KOG2300|consen 168 LFTLSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTIS 246 (629)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccC
Confidence 211 122223 44444445555543 222321 11 12233456678877777777655431 10
Q ss_pred ------------CCCHHHHHHHHH----H---------HHhCCCHHHHHHHHHHHHHcCCCCCCCccCH--------HHH
Q 038852 313 ------------RMTPATCNTLLE----V---------LLKHEKKEEAQALFEQMLDNHQPPNIQAVNS--------DTF 359 (851)
Q Consensus 313 ------------~~~~~~~~~Li~----~---------~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~--------~~~ 359 (851)
.+....+..+.+ + -.-.|-+++|.++-++++..-.+-....... .+.
T Consensus 247 t~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~L 326 (629)
T KOG2300|consen 247 TSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILL 326 (629)
T ss_pred CCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 111111111111 1 1134556777776666654311110000011 122
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhccCCCCCCCcc----CHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-
Q 038852 360 NIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAM----DVAGYNNII-ARYCENEMLEEAEKLLREISTKSLSPDVTTF- 433 (851)
Q Consensus 360 ~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----d~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~- 433 (851)
..++.+-.-.|++.+|++-+..|.+.....+-.. .......|+ ..++..+.++.|+.-|.+..+.--.-|...+
T Consensus 327 E~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~ 406 (629)
T KOG2300|consen 327 EHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFC 406 (629)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 2333333457899999888877755432222100 111122233 3345578899999999888765333343332
Q ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHHcCCcc------chhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH-----H
Q 038852 434 -RTLIDAYLKVERIDDALELFNRMVESGLRV------VVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDF-----L 501 (851)
Q Consensus 434 -~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~------~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~-----~ 501 (851)
..+...|.+.|+.+.-.++++.+-..+... ...++....-...+.+++.||..++.+.++..-.-|. .
T Consensus 407 nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~ 486 (629)
T KOG2300|consen 407 NLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTAC 486 (629)
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHH
Confidence 456677888888777666666654332111 0111111222234689999999999987764311111 1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH---cCCCCCHHHHH--HHHHHHHhcCC--HHHHHHHH
Q 038852 502 IYDVVVRGLCNEGLFDMSKDIVDQMMK---YGVGITPALQD--FVRETFGKAGR--GEEIERVL 558 (851)
Q Consensus 502 ~~~~ll~a~~~~g~~~~A~~~~~~m~~---~g~~~~~~~~~--~L~~~~~~~G~--~~eA~~ll 558 (851)
.+..|...+...|+..++.+...-.+. +-.+.....+. .+-++|...|+ .++..+.|
T Consensus 487 ~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~ 550 (629)
T KOG2300|consen 487 SLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAF 550 (629)
T ss_pred HHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 222333445567888888887766553 22222222222 24555666666 44444443
No 174
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.04 E-value=0.0077 Score=64.41 Aligned_cols=110 Identities=17% Similarity=0.171 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038852 358 TFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLI 437 (851)
Q Consensus 358 ~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll 437 (851)
+.+..+.-+...|....|.++..+... +|...|...+.+|+..++|++-.++... + -..+-|..++
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv--------~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv 244 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKV--------PDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFV 244 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCC--------cHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHH
Confidence 334445555566666666666555521 2566677777777777777766654332 1 1234566677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038852 438 DAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKM 491 (851)
Q Consensus 438 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m 491 (851)
.+|.+.|+..+|..+..++.. ..-+..|++.|++.+|.+.-.+.
T Consensus 245 ~~~~~~~~~~eA~~yI~k~~~----------~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 245 EACLKYGNKKEASKYIPKIPD----------EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHCCCHHHHHHHHHhCCh----------HHHHHHHHHCCCHHHHHHHHHHc
Confidence 777777777777766666221 12456667777777766654443
No 175
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.0032 Score=72.03 Aligned_cols=181 Identities=12% Similarity=0.146 Sum_probs=110.4
Q ss_pred CccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHH
Q 038852 104 RLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPT--VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNL 181 (851)
Q Consensus 104 ~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~L 181 (851)
+.++-..+..+++...++.|+.+.+.- +...+ .......++.+++.|++++|...|-+.+.. +.| ..+
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~-----s~V 403 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEP-----SEV 403 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CCh-----HHH
Confidence 456777788888888888887776542 22222 233445555566788888888888776432 222 234
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 038852 182 INTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGN 261 (851)
Q Consensus 182 i~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~ 261 (851)
|.-|.+..+..+-..+++.+.+.+-. +...-..|+.+|.+.++.++-.++.+..- .|.. ..-....+..|.+.+-
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla--~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sny 478 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLA--NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNY 478 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccc--cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhCh
Confidence 55556666666667777777766533 44456678888888888887776665544 2211 1113456666777777
Q ss_pred HHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 038852 262 LEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSL 307 (851)
Q Consensus 262 ~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~ 307 (851)
+++|..+-.+... ...+ +...+-..+++++|++++..+
T Consensus 479 l~~a~~LA~k~~~-----he~v---l~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 479 LDEAELLATKFKK-----HEWV---LDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHHhcc-----CHHH---HHHHHHHhcCHHHHHHHHhcC
Confidence 7777666555433 1122 222355678888888887664
No 176
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.03 E-value=8e-05 Score=78.74 Aligned_cols=132 Identities=14% Similarity=0.195 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038852 140 FTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTK 219 (851)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~ 219 (851)
.+|..++..+.+.+..+.|..+|.++++...+..+++...+++. |...++.+.|.++|+.+++..+. +...|...+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~f~~--~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKKFPS--DPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHHHTT---HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHH
Confidence 35666666666666666777777666543333333333333332 22234455566777666666444 5566666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038852 220 GFVDAGRIGEAVDLLRDMLSRQLGADS---LVYNNLISGFLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 220 ~~~~~g~~~~A~~l~~~m~~~g~~pd~---~~~~~Li~~~~~~g~~~~A~~~~~~~~~~ 275 (851)
.++..|+.+.|..+|++++.. +..+. ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666666654 22121 35555666556666666666665555543
No 177
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.02 E-value=0.00013 Score=79.86 Aligned_cols=92 Identities=16% Similarity=0.144 Sum_probs=52.4
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 038852 147 AAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGR 226 (851)
Q Consensus 147 ~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~ 226 (851)
..+...|++++|+++|+++++... .+...|..++.+|...|++++|+..++++++.++. +...|..++.+|...|+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P--~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~--~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP--NNAELYADRAQANIKLGNFTEAVADANKAIELDPS--LAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHhCC
Confidence 344455666666666666555322 23445555556666666666666666666655544 45555566666666666
Q ss_pred HHHHHHHHHHHHhcCC
Q 038852 227 IGEAVDLLRDMLSRQL 242 (851)
Q Consensus 227 ~~~A~~l~~~m~~~g~ 242 (851)
+++|+..|+++++.+.
T Consensus 86 ~~eA~~~~~~al~l~P 101 (356)
T PLN03088 86 YQTAKAALEKGASLAP 101 (356)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 6666666666665543
No 178
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.02 E-value=8.5e-05 Score=63.23 Aligned_cols=95 Identities=21% Similarity=0.387 Sum_probs=65.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038852 142 CNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGF 221 (851)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~ 221 (851)
+..++..+...|++++|+.+|+++++... .+...+..++.++...|++++|+++|+++++..+. +..++..++.++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP--DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD--NAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc--chhHHHHHHHHH
Confidence 44566666777777777777777765432 23356667777777777777777777777766544 445677777777
Q ss_pred HHcCCHHHHHHHHHHHHhc
Q 038852 222 VDAGRIGEAVDLLRDMLSR 240 (851)
Q Consensus 222 ~~~g~~~~A~~l~~~m~~~ 240 (851)
...|++++|.++++++++.
T Consensus 79 ~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 79 YKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHhHHHHHHHHHHHHcc
Confidence 7777777777777776654
No 179
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.01 E-value=0.071 Score=63.18 Aligned_cols=416 Identities=12% Similarity=0.036 Sum_probs=209.8
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCCCCH-
Q 038852 136 RPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN--IVSYNNLINTYC-DEGKVDEGMNVFRRIIETAPVGPSS- 211 (851)
Q Consensus 136 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd--~~~~~~Li~~~~-~~g~~~~A~~l~~~~~~~~~~~p~~- 211 (851)
+.++..|..||. .|++.++.+++...+.|. +.++..++..|. ...++++|+..+++.+..... .+.
T Consensus 27 ~~~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~ 96 (608)
T PF10345_consen 27 EEQLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLT 96 (608)
T ss_pred hhhHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchH
Confidence 345666776665 456677766654444443 446666777776 668899999999888655422 221
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcC---Ccc
Q 038852 212 ----NTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG----ADSLVYNNL-ISGFLNLGNLEKANELFDELKQRC---LVY 279 (851)
Q Consensus 212 ----~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~----pd~~~~~~L-i~~~~~~g~~~~A~~~~~~~~~~~---~~~ 279 (851)
.....++..+.+.+... |+..+++.++.--. .-...|..+ +..+...+|+..|.+.++.+.... ..+
T Consensus 97 d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~ 175 (608)
T PF10345_consen 97 DLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP 175 (608)
T ss_pred HHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH
Confidence 12334566677666555 88888887764221 111223223 223333478888999888877543 222
Q ss_pred chhhHHHHHHHH--HHcCCHHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHH--HhCCCHHHHHHHHHHHH---
Q 038852 280 DGVVNATFMEWW--FNQGKDKEAMQSYKSLMERNF---------RMTPATCNTLLEVL--LKHEKKEEAQALFEQML--- 343 (851)
Q Consensus 280 d~~~~~~li~~~--~~~g~~~~A~~l~~~~~~~~~---------~~~~~~~~~Li~~~--~~~g~~~~A~~l~~~m~--- 343 (851)
...++..++.+. .+.+..+++++.++.+..... .+...+|..+++.+ ...|+++.+...++++.
T Consensus 176 ~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~ 255 (608)
T PF10345_consen 176 AVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFL 255 (608)
T ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 334444444443 345666777777777644322 12345666666554 45566666655544432
Q ss_pred HcCCCC--------CC--------------------CccC---H--HHHHHHHHHHHHcCChHHHHHHHHHhccC-----
Q 038852 344 DNHQPP--------NI--------------------QAVN---S--DTFNIMVNECFKHGKFSEAIETFKKAGTH----- 385 (851)
Q Consensus 344 ~~~~~p--------~~--------------------~~~~---~--~~~~~L~~~~~~~g~~~~A~~~~~~~~~~----- 385 (851)
+..... +. ...+ . .+|..-+..++..+..++|.++++++...
T Consensus 256 ~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~ 335 (608)
T PF10345_consen 256 DEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLK 335 (608)
T ss_pred HHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhh
Confidence 211110 10 0001 1 11222223344556665666666554221
Q ss_pred ---CCCCCCcc----CHHHHHHHHHH---------HHhcCCHHHHHHHHHHHHhCCC-CC-------CHHHHHHHHHHHH
Q 038852 386 ---PKSKPFAM----DVAGYNNIIAR---------YCENEMLEEAEKLLREISTKSL-SP-------DVTTFRTLIDAYL 441 (851)
Q Consensus 386 ---~~~~~~~~----d~~~~~~li~~---------~~~~g~~~~A~~l~~~m~~~g~-~p-------d~~~~~~Ll~~~~ 441 (851)
........ +...|...+.. .+-.+++..|...+++|.+..- .+ ...++...+..+-
T Consensus 336 ~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q 415 (608)
T PF10345_consen 336 IKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQ 415 (608)
T ss_pred ccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHH
Confidence 11111110 11223222222 3347889999999998876421 11 1334444555566
Q ss_pred HcCCHHHHHHHHH--------HHHHcCCccchhHHHHH--HHHHHH--cCCHHH--HHHHHHHHhhC---CCCCCHHHHH
Q 038852 442 KVERIDDALELFN--------RMVESGLRVVVSFGTKV--FNELIT--KGKVAE--CAPILTKMGEK---DPKPDFLIYD 504 (851)
Q Consensus 442 ~~g~~~~A~~~~~--------~m~~~~~~~~~~~~~~L--~~~~~~--~g~~~~--A~~ll~~m~~~---~~~pd~~~~~ 504 (851)
..|+.+.|+..|. .+...+...+..++..+ +..+.. ..+.++ +.++++.+... ....+..++.
T Consensus 416 ~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~ 495 (608)
T PF10345_consen 416 STGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAY 495 (608)
T ss_pred HcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHH
Confidence 7899999999998 44445554444444321 122222 222333 66777766442 1122333333
Q ss_pred HH-HHHHHhcC--ChHHHHHHHHHHHHcC--CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038852 505 VV-VRGLCNEG--LFDMSKDIVDQMMKYG--VGITPA----LQDFVRETFGKAGRGEEIERVLNADRW 563 (851)
Q Consensus 505 ~l-l~a~~~~g--~~~~A~~~~~~m~~~g--~~~~~~----~~~~L~~~~~~~G~~~eA~~ll~~~~~ 563 (851)
.+ +.++.... ...++...+.+.++.- ...+.. .++++...+. .|+..|..+.......
T Consensus 496 ~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~ 562 (608)
T PF10345_consen 496 CLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQ 562 (608)
T ss_pred HHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 33 43443222 2235555544443211 111111 2222333333 6888887777666443
No 180
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.01 E-value=1.3e-05 Score=67.97 Aligned_cols=80 Identities=23% Similarity=0.452 Sum_probs=31.4
Q ss_pred CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038852 189 GKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANEL 268 (851)
Q Consensus 189 g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~ 268 (851)
|+++.|+.+|+++++..+..++...+..++.+|.+.|++++|++++++ .+.+.. +......++.+|.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 444444444444444433211222333344444444444444444444 222111 222222334444444444444444
Q ss_pred HH
Q 038852 269 FD 270 (851)
Q Consensus 269 ~~ 270 (851)
|+
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 181
>PF12854 PPR_1: PPR repeat
Probab=98.01 E-value=8.9e-06 Score=55.24 Aligned_cols=32 Identities=53% Similarity=0.919 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038852 425 SLSPDVTTFRTLIDAYLKVERIDDALELFNRM 456 (851)
Q Consensus 425 g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m 456 (851)
|+.||..+|++||.+|++.|++++|+++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 182
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.01 E-value=0.00014 Score=79.64 Aligned_cols=96 Identities=10% Similarity=0.129 Sum_probs=81.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038852 180 NLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL 259 (851)
Q Consensus 180 ~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~ 259 (851)
..+..+...|++++|+++|+++++.++. +...|..++.+|...|++++|+..++++++.... +...|..++.+|...
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~--~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~l 83 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPN--NAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHh
Confidence 3455677889999999999999998776 7788889999999999999999999999988655 778888899999999
Q ss_pred CCHHHHHHHHHHHHhcCCc
Q 038852 260 GNLEKANELFDELKQRCLV 278 (851)
Q Consensus 260 g~~~~A~~~~~~~~~~~~~ 278 (851)
|++++|+..|+++++.+..
T Consensus 84 g~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPG 102 (356)
T ss_pred CCHHHHHHHHHHHHHhCCC
Confidence 9999999999998887654
No 183
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.00 E-value=0.00017 Score=65.23 Aligned_cols=102 Identities=15% Similarity=0.240 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHH
Q 038852 177 SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGP-SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGA--DSLVYNNLI 253 (851)
Q Consensus 177 ~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p-~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p--d~~~~~~Li 253 (851)
++..++..+.+.|++++|++.|+++++..+..+ ....+..++.++.+.|++++|+++|++++...... ...++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 456667777778888888888888877654322 23456667777888888888888888777653321 235566777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCc
Q 038852 254 SGFLNLGNLEKANELFDELKQRCLV 278 (851)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~~~~~~~ 278 (851)
.++.+.|++++|.++++++++....
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcC
Confidence 7777777888888777777766443
No 184
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.00 E-value=0.00047 Score=75.94 Aligned_cols=101 Identities=16% Similarity=0.183 Sum_probs=52.9
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT 184 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~ 184 (851)
+.+...+..++.+|.+++|..+.--. .....|..|.......=+++-|.+.|.+.. |. -|..|
T Consensus 557 vp~~~~m~q~Ieag~f~ea~~iaclg------Vv~~DW~~LA~~ALeAL~f~~ARkAY~rVR-------dl-~~L~l--- 619 (1081)
T KOG1538|consen 557 VPQSAPMYQYIERGLFKEAYQIACLG------VTDTDWRELAMEALEALDFETARKAYIRVR-------DL-RYLEL--- 619 (1081)
T ss_pred ccccccchhhhhccchhhhhcccccc------eecchHHHHHHHHHhhhhhHHHHHHHHHHh-------cc-HHHHH---
Confidence 44455567788899999887654321 122345555554445555666665555441 11 12222
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038852 185 YCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRD 236 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~ 236 (851)
+.-++++.+++ ..|+.. .++..++-.|++.+|.++|.+
T Consensus 620 ----------i~EL~~~k~rg-e~P~~i---LlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 620 ----------ISELEERKKRG-ETPNDL---LLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred ----------HHHHHHHHhcC-CCchHH---HHHHHHHhhhhHHHHHHHHHH
Confidence 22234443332 434432 245556666777777777654
No 185
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.00 E-value=1.2e-05 Score=68.09 Aligned_cols=82 Identities=20% Similarity=0.440 Sum_probs=52.1
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 038852 152 AKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAV 231 (851)
Q Consensus 152 ~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~ 231 (851)
.|+++.|+.+|+++++.....++...+..++.+|.+.|++++|++++++ .+.++. +......++.+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~--~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS--NPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC--HHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC--CHHHHHHHHHHHHHhCCHHHHH
Confidence 4677777777777776543222444555577777777777777777776 333322 3345556677777788888887
Q ss_pred HHHHH
Q 038852 232 DLLRD 236 (851)
Q Consensus 232 ~l~~~ 236 (851)
++|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77765
No 186
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.99 E-value=9.8e-05 Score=71.81 Aligned_cols=96 Identities=10% Similarity=0.041 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVP-NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHL 217 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~p-d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~L 217 (851)
...|..++..+...|++++|+..|++++....... ...+|..++.+|...|++++|++.|+++++..+. ...++..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~--~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF--LPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--cHHHHHHH
Confidence 56677888888899999999999999976533222 2458899999999999999999999999987655 55677777
Q ss_pred HHHHH-------HcCCHHHHHHHHHH
Q 038852 218 TKGFV-------DAGRIGEAVDLLRD 236 (851)
Q Consensus 218 i~~~~-------~~g~~~~A~~l~~~ 236 (851)
+.++. ..|++++|+..+++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 77777 55666554444443
No 187
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.99 E-value=0.00031 Score=65.53 Aligned_cols=98 Identities=10% Similarity=-0.023 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHH
Q 038852 211 SNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEW 290 (851)
Q Consensus 211 ~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~ 290 (851)
......+...+...|++++|..+|+.+...++. +..-|..|+.+|-..|++++|++.|..+...++. |...+..+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 345556677777888888888888888887666 7777888888888888888888888888887765 77777777788
Q ss_pred HHHcCCHHHHHHHHHHHHHh
Q 038852 291 WFNQGKDKEAMQSYKSLMER 310 (851)
Q Consensus 291 ~~~~g~~~~A~~l~~~~~~~ 310 (851)
+.+.|+.+.|++.|+.++..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888777766654
No 188
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.97 E-value=0.0061 Score=72.48 Aligned_cols=341 Identities=14% Similarity=0.164 Sum_probs=181.2
Q ss_pred CCccHHHHHHHHHHcCCHHHHHHHHHHHHHc-C--CCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHcCCCCCCHH--
Q 038852 103 PRLNLHNRVQSLIRAGDLDAASYLARQAVFS-R--IRPTVFTCNAIIAAMYRA-KRYDDAVALFKYFFDQADIVPNIV-- 176 (851)
Q Consensus 103 ~~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~-~--~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~~~~~~~~~pd~~-- 176 (851)
+|.-....++.+++..++.+|..+.++-.-. + +..+...+..-+.++.+. ++.+--..++..+ +..++..+..
T Consensus 676 pR~lVLa~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~l-k~eDvtk~~y~~ 754 (1265)
T KOG1920|consen 676 PRILVLAKVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTEL-KEEDVTKTMYSS 754 (1265)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhc-ccchhhhhhccc
Confidence 4555667788999999999998776653210 0 112233344444455543 3333333333322 2111111100
Q ss_pred HHHHHHHHHHHc----CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCCHHH--
Q 038852 177 SYNNLINTYCDE----GKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAG--RIGEAVDLLRDMLSRQLGADSLV-- 248 (851)
Q Consensus 177 ~~~~Li~~~~~~----g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g--~~~~A~~l~~~m~~~g~~pd~~~-- 248 (851)
++.+-..+|... .+.+...++++..+.+. .|+ .....+|..|++.+ .+++|+....+........+...
T Consensus 755 ~~~s~k~~~~~r~~~d~kv~~vc~~vr~~l~~~--~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~~~~ad~al 831 (1265)
T KOG1920|consen 755 TSGSGKQVYMSRDPYDNKVNSVCDAVRNALERR--APD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQVAVSADEAL 831 (1265)
T ss_pred cccccceeEEeccchhhHHHHHHHHHHHHHhhc--Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhcccchhHHHHH
Confidence 011111122222 22333444444444432 334 34556778888877 77777777777664211111110
Q ss_pred --------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHH-------------HcCCHHHHHHHHHHH
Q 038852 249 --------YNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWF-------------NQGKDKEAMQSYKSL 307 (851)
Q Consensus 249 --------~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~-------------~~g~~~~A~~l~~~~ 307 (851)
-+.|.+...-.=|++.|..+.+.-.+ |..-|.-+++-+. ..+++++|+.-+.++
T Consensus 832 ~hll~Lvdvn~lfn~ALgtYDl~Lal~VAq~Sqk-----DPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~ 906 (1265)
T KOG1920|consen 832 KHLLFLVDVNELFNSALGTYDLDLALLVAQKSQK-----DPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSEC 906 (1265)
T ss_pred HHHHhhccHHHHHHhhhcccchHHHHHHHHHhcc-----ChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHc
Confidence 01112222222233444333322211 3333333322222 123444444444333
Q ss_pred HHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCC
Q 038852 308 MERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPK 387 (851)
Q Consensus 308 ~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~ 387 (851)
. ...|.-.++.-.++|-+.+|+.++..-.+. ....|...+..+.....+++|.-.|+...+
T Consensus 907 ~-------~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~---------~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk--- 967 (1265)
T KOG1920|consen 907 G-------ETYFPECKNYIKKHGLYDEALALYKPDSEK---------QKVIYEAYADHLREELMSDEAALMYERCGK--- 967 (1265)
T ss_pred C-------ccccHHHHHHHHhcccchhhhheeccCHHH---------HHHHHHHHHHHHHHhccccHHHHHHHHhcc---
Confidence 2 234555555556777777777776543332 345677777888888999999999988743
Q ss_pred CCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccch
Q 038852 388 SKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVT--TFRTLIDAYLKVERIDDALELFNRMVESGLRVVV 465 (851)
Q Consensus 388 ~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 465 (851)
....+.+|..+|++++|+.+...+... -|.. +-..|+.-+...++.-+|-++..+....-
T Consensus 968 ----------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~----- 1029 (1265)
T KOG1920|consen 968 ----------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSDP----- 1029 (1265)
T ss_pred ----------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH-----
Confidence 334567888899999999998877532 2322 23567777888888888888877766421
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 038852 466 SFGTKVFNELITKGKVAECAPILTKMG 492 (851)
Q Consensus 466 ~~~~~L~~~~~~~g~~~~A~~ll~~m~ 492 (851)
...+..|++...|++|+++.....
T Consensus 1030 ---~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1030 ---EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred ---HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 224566777788888887776654
No 189
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.97 E-value=0.00011 Score=74.58 Aligned_cols=94 Identities=21% Similarity=0.234 Sum_probs=72.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 038852 182 INTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGN 261 (851)
Q Consensus 182 i~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~ 261 (851)
+.-+.+.++|.+|+..|.++++.+|. |.+.|..-+.+|.+.|.++.|++-.+.++..+.. ...+|..|+.+|...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~--nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPT--NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCc
Confidence 34456778888888888888887766 7777888888888888888888888888877544 55778888888888888
Q ss_pred HHHHHHHHHHHHhcCCc
Q 038852 262 LEKANELFDELKQRCLV 278 (851)
Q Consensus 262 ~~~A~~~~~~~~~~~~~ 278 (851)
+++|++.|++.++.+..
T Consensus 165 ~~~A~~aykKaLeldP~ 181 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPD 181 (304)
T ss_pred HHHHHHHHHhhhccCCC
Confidence 88888888887776544
No 190
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.97 E-value=0.00021 Score=73.73 Aligned_cols=212 Identities=10% Similarity=0.008 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHH
Q 038852 317 ATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVA 396 (851)
Q Consensus 317 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~ 396 (851)
.++..+..+.++.|.+++++..--..++....-+....-.+.|..+.+.+.+.-++.+++.+-+.....+....-..-..
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 34555566666666666655432222211000000001345778888888888888888888877665544433222234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCccchhH
Q 038852 397 GYNNIIARYCENEMLEEAEKLLREISTKSLSP-----DVTTFRTLIDAYLKVERIDDALELFNRMVES----GLRVVVSF 467 (851)
Q Consensus 397 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----d~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~ 467 (851)
....|..++...+.++++++.|+.+.+.-... ...++..|...|....|+++|.-+..++.+. +++....-
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 44557777778888999999999876532111 2357889999999999999999888877653 33333322
Q ss_pred HH-----HHHHHHHHcCCHHHHHHHHHHHhhCCCC-CCHH----HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038852 468 GT-----KVFNELITKGKVAECAPILTKMGEKDPK-PDFL----IYDVVVRGLCNEGLFDMSKDIVDQMMK 528 (851)
Q Consensus 468 ~~-----~L~~~~~~~g~~~~A~~ll~~m~~~~~~-pd~~----~~~~ll~a~~~~g~~~~A~~~~~~m~~ 528 (851)
|. .+..+|...|+.-+|.+..++..+..+. -|.. ....+.+.|...|+.|.|..-|+.+..
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 22 2445667778888887777775443111 1333 345567778889999998888888765
No 191
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.92 E-value=0.013 Score=62.58 Aligned_cols=111 Identities=16% Similarity=0.130 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHH
Q 038852 397 GYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELI 476 (851)
Q Consensus 397 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~ 476 (851)
+.+..|.-+...|....|.++..+.. + ||...|...+.+|+..++|++-.++... . + ...-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~fa~s---k--K-sPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEKFAKS---K--K-SPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---C--C-CCCChHHHHHHHH
Confidence 45556677778899988888877663 3 6888999999999999999987775432 1 1 2234455788999
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038852 477 TKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMM 527 (851)
Q Consensus 477 ~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~ 527 (851)
+.|+..+|..++.++. +..-+..|.+.|++.+|.+...+..
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 9999999999988832 2446788889999999987765543
No 192
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.90 E-value=0.034 Score=55.69 Aligned_cols=203 Identities=19% Similarity=0.112 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHH
Q 038852 317 ATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVA 396 (851)
Q Consensus 317 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~ 396 (851)
..+..+...+...+++..+...+.........+. ....+..++..+...+++..+++.+......... +..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 130 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPN----LAEALLNLGLLLEALGKYEEALELLEKALALDPD-----PDL 130 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccc----hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCC-----cch
Confidence 3444455555566666666666655543100110 3445555556666666666666666665443222 111
Q ss_pred HHHHHHH-HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHH
Q 038852 397 GYNNIIA-RYCENEMLEEAEKLLREISTKSL--SPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFN 473 (851)
Q Consensus 397 ~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~--~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~ 473 (851)
....... ++...|++++|...+.+...... ......+..+...+...+++++++..+.++.+.........+..+..
T Consensus 131 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 210 (291)
T COG0457 131 AEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGL 210 (291)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhH
Confidence 1222222 45566666666666666644211 01223333344445556666666666666666543312233334555
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038852 474 ELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKY 529 (851)
Q Consensus 474 ~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~ 529 (851)
.+...+++++|...+......... ....+..+...+...+.++++...+.+..+.
T Consensus 211 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 211 LYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666666654222 2333333444444555667777666666654
No 193
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.88 E-value=0.00021 Score=75.59 Aligned_cols=132 Identities=12% Similarity=0.125 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038852 176 VSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVD-AGRIGEAVDLLRDMLSRQLGADSLVYNNLIS 254 (851)
Q Consensus 176 ~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~-~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~ 254 (851)
.+|..+++.+.+.+..+.|..+|.++++.... +..+|...+..-.. .++.+.|.++|+.+++. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~--~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRC--TYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 45777777777777788888888888754433 44455555555344 45666688888888876 3337777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCc-c-chhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 038852 255 GFLNLGNLEKANELFDELKQRCLV-Y-DGVVNATFMEWWFNQGKDKEAMQSYKSLMER 310 (851)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~~~~~~~-~-d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~ 310 (851)
.+.+.++.+.|+.+|++.+..-.. . ...+|..+++.-.+.|+++.+.++.+++.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888887765211 1 1245666666666666666666666555544
No 194
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.85 E-value=0.0012 Score=66.18 Aligned_cols=67 Identities=15% Similarity=0.263 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 038852 176 VSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS-SNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQL 242 (851)
Q Consensus 176 ~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~-~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~ 242 (851)
..+...+..+...|++++|++.|++++...+..+- ..+...++.++.+.|++++|+..|++.++.-+
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP 73 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP 73 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 33444555566667777777777776666544332 23455566666666666666666666666533
No 195
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.83 E-value=0.0024 Score=64.07 Aligned_cols=191 Identities=19% Similarity=0.221 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH-HHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN-IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSN-TYRH 216 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd-~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~-~~~~ 216 (851)
...+-..+..+...|++++|++.|+.++......+- ......++.++.+.|++++|+..|++.++..|..+... ++..
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 444555667788999999999999999877554333 34677889999999999999999999999988766542 2222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCC
Q 038852 217 LTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGK 296 (851)
Q Consensus 217 Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~ 296 (851)
++.++... .... + ......+...+|+..|+.+++.-+. ...
T Consensus 85 ~g~~~~~~--~~~~---~-------------------~~~~D~~~~~~A~~~~~~li~~yP~---------------S~y 125 (203)
T PF13525_consen 85 LGLSYYKQ--IPGI---L-------------------RSDRDQTSTRKAIEEFEELIKRYPN---------------SEY 125 (203)
T ss_dssp HHHHHHHH--HHHH---H--------------------TT---HHHHHHHHHHHHHHHH-TT---------------STT
T ss_pred HHHHHHHh--Cccc---h-------------------hcccChHHHHHHHHHHHHHHHHCcC---------------chH
Confidence 22222211 1111 1 1111123345566666665554332 122
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHH
Q 038852 297 DKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEA 375 (851)
Q Consensus 297 ~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A 375 (851)
..+|...+..+.+.-- ..-..++..|.+.|.+..|+.-|+.+++.-..... ...+...|+.+|.+.|..+.+
T Consensus 126 ~~~A~~~l~~l~~~la----~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~---~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 126 AEEAKKRLAELRNRLA----EHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPA---AEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHH---HHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCch---HHHHHHHHHHHHHHhCChHHH
Confidence 2233332222221100 11122566777778888888877777775322110 234556667777777766643
No 196
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.79 E-value=0.023 Score=64.55 Aligned_cols=171 Identities=13% Similarity=0.025 Sum_probs=112.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCCCccCHHHHHHHHHHHHH----cCChHHHHHHHHHhccCCCCCCCc
Q 038852 318 TCNTLLEVLLKHEKKEEAQALFEQMLDNH-QPPNIQAVNSDTFNIMVNECFK----HGKFSEAIETFKKAGTHPKSKPFA 392 (851)
Q Consensus 318 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~~-~~p~~~~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 392 (851)
.+..++....-.||-+.+++++.+..+.+ +.-.+...-...|+.++..++. ..+.+.|.++++.+....+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~---- 265 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPN---- 265 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCC----
Confidence 45557777778899999999999876632 1110000011223333333332 45678899999999877664
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHH
Q 038852 393 MDVAGYNNIIARYCENEMLEEAEKLLREISTKSL---SPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGT 469 (851)
Q Consensus 393 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 469 (851)
.......-.+.+...|++++|++.|++...... ......+.-++.++....++++|.+.|.++.+.+-.....++.
T Consensus 266 -s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y 344 (468)
T PF10300_consen 266 -SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAY 344 (468)
T ss_pred -cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHH
Confidence 444445556777789999999999997664210 1123455667778888999999999999999865443333333
Q ss_pred HHHHHHHHcCCH-------HHHHHHHHHHhh
Q 038852 470 KVFNELITKGKV-------AECAPILTKMGE 493 (851)
Q Consensus 470 ~L~~~~~~~g~~-------~~A~~ll~~m~~ 493 (851)
..+.++...|+. ++|.++|.++..
T Consensus 345 ~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 345 LAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 455667778887 888888887643
No 197
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.76 E-value=0.0045 Score=58.44 Aligned_cols=131 Identities=15% Similarity=0.160 Sum_probs=70.5
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHH
Q 038852 136 RPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYR 215 (851)
Q Consensus 136 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~ 215 (851)
.|++..-..|..++.+.|++.+|...|.+.+. .-+.-|......+..+....+++..|...++++.+.++..-+.++..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 34444455566666666666666666666533 12233455555666666666666666666666665554433334555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038852 216 HLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELF 269 (851)
Q Consensus 216 ~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~ 269 (851)
.+.+.|...|++.+|...|+.++..-. +..........+.+.|+.++|..-+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~yp--g~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYP--GPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCC--CHHHHHHHHHHHHHhcchhHHHHHH
Confidence 556666666666666666666655432 2222223344445555555444433
No 198
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.043 Score=62.47 Aligned_cols=337 Identities=12% Similarity=0.079 Sum_probs=179.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038852 179 NNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGR--IGEAVDLLRDMLSRQLGADSLVYNNLISGF 256 (851)
Q Consensus 179 ~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~--~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~ 256 (851)
..+|+-+...+.|..|+.+..-+-... .-+..+|...+..+++..+ -+++++.+++-+.... .+...|..+++..
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~--~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~A 517 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPE--SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRA 517 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCcc--ccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHH
Confidence 356677778888999988877663221 1124567777777776532 2344444444333322 3567788888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCc----cchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCH
Q 038852 257 LNLGNLEKANELFDELKQRCLV----YDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKK 332 (851)
Q Consensus 257 ~~~g~~~~A~~~~~~~~~~~~~----~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~ 332 (851)
...|+.+.|..+++.=...+.. .+..-+...+.-+.+.||.+....++..+...- + ....+....+.
T Consensus 518 y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~------~---~s~l~~~l~~~ 588 (829)
T KOG2280|consen 518 YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL------N---RSSLFMTLRNQ 588 (829)
T ss_pred HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH------H---HHHHHHHHHhc
Confidence 8999999998887642221110 111122233333444555555554444443321 0 00111122334
Q ss_pred HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHH-h-ccCCCCCCCccCHHHHHHHHHHHHhcCC
Q 038852 333 EEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKK-A-GTHPKSKPFAMDVAGYNNIIARYCENEM 410 (851)
Q Consensus 333 ~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~-~-~~~~~~~~~~~d~~~~~~li~~~~~~g~ 410 (851)
-.|..+|.+..+..-. ..+-..| +.++...++..|.. . .......+..++ ......+|.+...
T Consensus 589 p~a~~lY~~~~r~~~~-----------~~l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~ 653 (829)
T KOG2280|consen 589 PLALSLYRQFMRHQDR-----------ATLYDFY-NQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKE 653 (829)
T ss_pred hhhhHHHHHHHHhhch-----------hhhhhhh-hcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhh
Confidence 4566666665542111 1111222 22222222222221 1 000011111112 2233334443332
Q ss_pred HH---HH-------HHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcC
Q 038852 411 LE---EA-------EKLLREIST-KSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKG 479 (851)
Q Consensus 411 ~~---~A-------~~l~~~m~~-~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g 479 (851)
.. +| +.+.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.. -++..+|..-+.+++..+
T Consensus 654 ~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~ 729 (829)
T KOG2280|consen 654 KSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIK 729 (829)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhh
Confidence 11 11 122222221 1222222344445556677888888887765543 245556666778899999
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 480 KVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLN 559 (851)
Q Consensus 480 ~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~ 559 (851)
++++-+++-+.+. ...-|.-++.+|.+.|+.++|.+++.++-.. ...+++|.+.|++.+|.++--
T Consensus 730 kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 730 KWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHH
Confidence 9998777766554 2445667899999999999999998876431 146778999999999987755
Q ss_pred hh
Q 038852 560 AD 561 (851)
Q Consensus 560 ~~ 561 (851)
+-
T Consensus 795 ~~ 796 (829)
T KOG2280|consen 795 EH 796 (829)
T ss_pred Hh
Confidence 43
No 199
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.083 Score=62.85 Aligned_cols=90 Identities=13% Similarity=0.007 Sum_probs=55.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 038852 469 TKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKA 548 (851)
Q Consensus 469 ~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~ 548 (851)
...+.+|+..|..++...+|-+..+.+ .+...|..++......++ .++.+..+.... .-....+...++.+...
T Consensus 605 ~~a~lcYi~agsv~k~v~~w~~~~~~~--~~~~~y~~~~e~l~~~~~---~l~~~~~~~~~s-~~l~~~~~~yanllasQ 678 (1049)
T KOG0307|consen 605 SAAILCYICAGSVDKLVEIWLKALDLE--LAPTSYQDLAEDLMELTL---KLAQFSANKTYS-AGLAKKFSEYANLLASQ 678 (1049)
T ss_pred hhhhHHhhhccChhhhHHHHHHhcccc--cchHHHHHHHHHHHHHHh---hhhhcccCcccc-HHHHHHHHHHHHHHHhc
Confidence 446789999999999999999888764 345555555443322111 111111111100 00222333478888999
Q ss_pred CCHHHHHHHHHhhhhc
Q 038852 549 GRGEEIERVLNADRWG 564 (851)
Q Consensus 549 G~~~eA~~ll~~~~~~ 564 (851)
|.++.|..++..+..+
T Consensus 679 G~~~~A~~~l~~~~s~ 694 (1049)
T KOG0307|consen 679 GALAAAMSFLPLLPSG 694 (1049)
T ss_pred ChHHHHHhhcCcCccc
Confidence 9999999999987654
No 200
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.0023 Score=63.01 Aligned_cols=95 Identities=22% Similarity=0.319 Sum_probs=47.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhccCCC-CCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHH
Q 038852 359 FNIMVNECFKHGKFSEAIETFKKAGTHPK-SKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKS---LSPDVTTFR 434 (851)
Q Consensus 359 ~~~L~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~pd~~~~~ 434 (851)
+..+.+++.+..++++|-..|.+-..... ...+.--...|...|..+....|+..|++++++--..+ -.-|..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 34444555566666665554443211100 00000012334555556666677778888777643321 112455666
Q ss_pred HHHHHHHHcCCHHHHHHHHH
Q 038852 435 TLIDAYLKVERIDDALELFN 454 (851)
Q Consensus 435 ~Ll~~~~~~g~~~~A~~~~~ 454 (851)
.|+.+| ..|+.+++.+++.
T Consensus 233 nLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHh-ccCCHHHHHHHHc
Confidence 677665 4566666655543
No 201
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.72 E-value=0.0019 Score=73.92 Aligned_cols=120 Identities=10% Similarity=0.120 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCC
Q 038852 191 VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDA--------GRIGEAVDLLRDMLSRQ-LGADSLVYNNLISGFLNLGN 261 (851)
Q Consensus 191 ~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~--------g~~~~A~~l~~~m~~~g-~~pd~~~~~~Li~~~~~~g~ 261 (851)
+++|+.+|+++++.+|. +...|..+..++... .++..+.+..+++.... ...+..+|..++..+...|+
T Consensus 358 ~~~A~~lle~Ai~ldP~--~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~ 435 (517)
T PRK10153 358 LNKASDLLEEILKSEPD--FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGK 435 (517)
T ss_pred HHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCC
Confidence 55666666666666555 444555444433321 12334444444443321 22244556666666666677
Q ss_pred HHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 038852 262 LEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRM 314 (851)
Q Consensus 262 ~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~ 314 (851)
+++|...|+++++.+. +...|..++.+|...|+.++|++.|+++...++..
T Consensus 436 ~~~A~~~l~rAl~L~p--s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 436 TDEAYQAINKAIDLEM--SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred HHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 7777777777666653 45566666666777777777777777766665443
No 202
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.71 E-value=0.012 Score=59.30 Aligned_cols=192 Identities=10% Similarity=0.101 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038852 356 SDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRT 435 (851)
Q Consensus 356 ~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~ 435 (851)
...+..-+..-.+.|++++|.+.|+.+....+..++. ..+...++-++.+.+++++|+..+++.+..-......-|..
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~--~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS--EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc--HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 3444444555557888888888888887665554443 45556677777888888888888888776532222222333
Q ss_pred HHHHHHH-------cCCHH---HHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 038852 436 LIDAYLK-------VERID---DALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDV 505 (851)
Q Consensus 436 Ll~~~~~-------~g~~~---~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ 505 (851)
.|.+++. ..|.. .|+.-|++++..- |+.. -..+|...+..+.+. =...=..
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~-------------Ya~dA~~~i~~~~d~----LA~~Em~ 172 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSR-------------YAPDAKARIVKLNDA----LAGHEMA 172 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCc-------------chhhHHHHHHHHHHH----HHHHHHH
Confidence 3333322 12223 3334444444432 1111 111222222211110 0001123
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCC
Q 038852 506 VVRGLCNEGLFDMSKDIVDQMMKYGVGITP---ALQDFVRETFGKAGRGEEIERVLNADRWGYAAPV 569 (851)
Q Consensus 506 ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~L~~~~~~~G~~~eA~~ll~~~~~~~~~~p 569 (851)
+.+-|.+.|.+..|..-+++|++. +..+. +.+..+.++|.+.|..++|.+.-+-+...+++.+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 566788889999999999998875 44333 3444578889999999999988888877777654
No 203
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.041 Score=62.70 Aligned_cols=91 Identities=8% Similarity=0.050 Sum_probs=39.6
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKR--YDDAVALFKYFFDQADIVPNIVSYNNLIN 183 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~l~~~~~~~~~~~pd~~~~~~Li~ 183 (851)
+...++..++..+.|..|+++..-+-..... ...+|......+.+..+ -+++++.+++=+... ..+..+|..+++
T Consensus 439 ~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~--~~~~iSy~~iA~ 515 (829)
T KOG2280|consen 439 SEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK--LTPGISYAAIAR 515 (829)
T ss_pred chhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc--CCCceeHHHHHH
Confidence 3344555566666666666655443211111 13344444444443321 122222222211111 123345555555
Q ss_pred HHHHcCChHHHHHHHH
Q 038852 184 TYCDEGKVDEGMNVFR 199 (851)
Q Consensus 184 ~~~~~g~~~~A~~l~~ 199 (851)
....+|+.+-|..+++
T Consensus 516 ~Ay~~GR~~LA~kLle 531 (829)
T KOG2280|consen 516 RAYQEGRFELARKLLE 531 (829)
T ss_pred HHHhcCcHHHHHHHHh
Confidence 5556666666665554
No 204
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.69 E-value=0.022 Score=60.25 Aligned_cols=130 Identities=12% Similarity=0.169 Sum_probs=65.8
Q ss_pred HHHHhCC-CHHHHHHHHHHHHHc--------CCCCCCCccCHHHHHHHHHHHHHcCChH---HHHHHHHHhccCCCCCCC
Q 038852 324 EVLLKHE-KKEEAQALFEQMLDN--------HQPPNIQAVNSDTFNIMVNECFKHGKFS---EAIETFKKAGTHPKSKPF 391 (851)
Q Consensus 324 ~~~~~~g-~~~~A~~l~~~m~~~--------~~~p~~~~~~~~~~~~L~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~ 391 (851)
......+ ++++|...++++.+. ...++.......++..++.+|...+..+ +|.++++.+....+.
T Consensus 43 ~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~--- 119 (278)
T PF08631_consen 43 KSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN--- 119 (278)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC---
Confidence 3333444 666666666655442 1111111123345666777777766644 444555555433333
Q ss_pred ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHc
Q 038852 392 AMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLK--VERIDDALELFNRMVES 459 (851)
Q Consensus 392 ~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~--~g~~~~A~~~~~~m~~~ 459 (851)
....+..-++.+.+.++.+++.+++.+|+.. +.-....+..++..+.. ......|...++.++..
T Consensus 120 --~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 120 --KPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLN 186 (278)
T ss_pred --CcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 3444555566666677788888888888765 22122334433333311 12234555555555543
No 205
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.0015 Score=66.97 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHH
Q 038852 192 DEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLG---NLEKANEL 268 (851)
Q Consensus 192 ~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g---~~~~A~~~ 268 (851)
++.+.-++.-+..+|. |...|..|+.+|...|+++.|+..|+++.+...+ +...+..++.++.... +..++.++
T Consensus 139 ~~l~a~Le~~L~~nP~--d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 139 EALIARLETHLQQNPG--DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHhCCC--CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 3334444555555655 6677777777777777777777777777776444 6666666666554432 35566777
Q ss_pred HHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 038852 269 FDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNF 312 (851)
Q Consensus 269 ~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~ 312 (851)
|+++++.+.. |......|...++..|++.+|...++.|++...
T Consensus 216 l~~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 216 LRQALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 7777766555 666666666666666666666666666666544
No 206
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.67 E-value=0.24 Score=58.73 Aligned_cols=163 Identities=12% Similarity=0.190 Sum_probs=79.4
Q ss_pred HHHHHHH-HcCCHHHHHHHHHHHHHcCCCCCHH-----HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-C--HHHHH
Q 038852 109 NRVQSLI-RAGDLDAASYLARQAVFSRIRPTVF-----TCNAIIAAMYRAKRYDDAVALFKYFFDQADIVP-N--IVSYN 179 (851)
Q Consensus 109 ~ll~~l~-~~g~~~~A~~l~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~p-d--~~~~~ 179 (851)
.++..|+ ...++++|+..+++.+...-+.+.. .-..++..+.+.+... |+..+++.++...... + ...|.
T Consensus 64 ~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~fr 142 (608)
T PF10345_consen 64 RLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFR 142 (608)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHH
Confidence 4444444 5567788887777765433222211 1123344444444444 7777777665432211 1 12222
Q ss_pred HH-HHHHHHcCChHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCC---------CC
Q 038852 180 NL-INTYCDEGKVDEGMNVFRRIIETAP--VGPSSNTYRHLTKGFV--DAGRIGEAVDLLRDMLSRQLG---------AD 245 (851)
Q Consensus 180 ~L-i~~~~~~g~~~~A~~l~~~~~~~~~--~~p~~~~~~~Li~~~~--~~g~~~~A~~l~~~m~~~g~~---------pd 245 (851)
.+ +..+...+|+..|++.++.+..... ..+...++..++.+.. +.+..+++++.++++...... +-
T Consensus 143 ll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~q 222 (608)
T PF10345_consen 143 LLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQ 222 (608)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHH
Confidence 22 2222233677777777777765542 2222333333444333 345556666666666432211 12
Q ss_pred HHHHHHHHHHH--HhcCCHHHHHHHHHHH
Q 038852 246 SLVYNNLISGF--LNLGNLEKANELFDEL 272 (851)
Q Consensus 246 ~~~~~~Li~~~--~~~g~~~~A~~~~~~~ 272 (851)
..+|..+++.+ ...|+++.+...++++
T Consensus 223 L~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 223 LKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555555544 3456665665555544
No 207
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.66 E-value=0.00022 Score=57.59 Aligned_cols=64 Identities=23% Similarity=0.442 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAG-RIGEAVDLLRDMLSR 240 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g-~~~~A~~l~~~m~~~ 240 (851)
..+|..++..+...|++++|+..|+++++.++. +..+|..++.+|...| ++++|++.|+++++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~--~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN--NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 344555555555555555555555555555444 4455555555555555 455555555555543
No 208
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.65 E-value=0.0041 Score=71.19 Aligned_cols=137 Identities=12% Similarity=0.067 Sum_probs=101.4
Q ss_pred CCHHHHHHHHHHHHH--cC---CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHhc
Q 038852 209 PSSNTYRHLTKGFVD--AG---RIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL--------GNLEKANELFDELKQR 275 (851)
Q Consensus 209 p~~~~~~~Li~~~~~--~g---~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~--------g~~~~A~~~~~~~~~~ 275 (851)
.|..+|...+++... .+ ++++|+++|+++++..+. +...|..+..+|... +++..+.+..++....
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 366777777766543 32 378999999999998766 666776665555432 1244555555554443
Q ss_pred C-CccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 038852 276 C-LVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQP 348 (851)
Q Consensus 276 ~-~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~ 348 (851)
. ...+..++..+...+...|++++|...|+++++.+. +...|..++.++...|+.++|++.|+++...+..
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p--s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM--SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 2 223557788887778888999999999999999884 6789999999999999999999999999885443
No 209
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.028 Score=58.01 Aligned_cols=158 Identities=12% Similarity=0.091 Sum_probs=112.5
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C--CCCCHHHHHHHHHHHHhcCC
Q 038852 185 YCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSR-Q--LGADSLVYNNLISGFLNLGN 261 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~-g--~~pd~~~~~~Li~~~~~~g~ 261 (851)
+...|++.+|...++++++..|. |..++...=.+|..+|+.+.-...+++++.. + +.-...+...+.-++..+|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~Pt--Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPT--DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHhCch--hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 34568888888899999887665 8888888888889999999888888888765 2 22123333445556678899
Q ss_pred HHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCCHHHHHHH
Q 038852 262 LEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFR---MTPATCNTLLEVLLKHEKKEEAQAL 338 (851)
Q Consensus 262 ~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~---~~~~~~~~Li~~~~~~g~~~~A~~l 338 (851)
+++|++.-++.++.+.. |......+..++...|+++++.++..+-...=-. .-...|-.....+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99999999998887765 7777778888888899999998887654321000 0011233344556677899999999
Q ss_pred HHHHHHc
Q 038852 339 FEQMLDN 345 (851)
Q Consensus 339 ~~~m~~~ 345 (851)
|++-+-.
T Consensus 270 yD~ei~k 276 (491)
T KOG2610|consen 270 YDREIWK 276 (491)
T ss_pred HHHHHHH
Confidence 9875543
No 210
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.0077 Score=59.42 Aligned_cols=213 Identities=14% Similarity=0.161 Sum_probs=110.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038852 178 YNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFL 257 (851)
Q Consensus 178 ~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~ 257 (851)
|.-...+|....++++|...+.++.+.... |. .|-..+ ..++.|.-+.+++.+..- -+..|+....+|.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEn--nr-slfhAA------KayEqaamLake~~klsE--vvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYEN--NR-SLFHAA------KAYEQAAMLAKELSKLSE--VVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHh--cc-cHHHHH------HHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHH
Confidence 444455566667777777766666543211 11 111122 223444444444443310 1234555566677
Q ss_pred hcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHhCCCH
Q 038852 258 NLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNF-----RMTPATCNTLLEVLLKHEKK 332 (851)
Q Consensus 258 ~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-----~~~~~~~~~Li~~~~~~g~~ 332 (851)
..|..+.|-..++++-+. .+..+.++|+.+|.+.+..-. ..-...+..+.++|++..++
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 777777666666655431 223344445555544332110 01113345556667777777
Q ss_pred HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHH
Q 038852 333 EEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLE 412 (851)
Q Consensus 333 ~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~ 412 (851)
++|-..|.+-......-+....--..|...+.+|....++..|.++|+.....+.. .-.-|..+...|+.+|- .||.+
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f-~~sed~r~lenLL~ayd-~gD~E 244 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAF-LKSEDSRSLENLLTAYD-EGDIE 244 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccc-cChHHHHHHHHHHHHhc-cCCHH
Confidence 77666555432211100000002235677777888888999999999985443222 11226777888887764 67777
Q ss_pred HHHHHHH
Q 038852 413 EAEKLLR 419 (851)
Q Consensus 413 ~A~~l~~ 419 (851)
++.+++.
T Consensus 245 ~~~kvl~ 251 (308)
T KOG1585|consen 245 EIKKVLS 251 (308)
T ss_pred HHHHHHc
Confidence 7666543
No 211
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.62 E-value=0.0039 Score=68.59 Aligned_cols=120 Identities=14% Similarity=0.257 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 038852 245 DSLVYNNLISGFLNLGNLEKANELFDELKQR--CLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTL 322 (851)
Q Consensus 245 d~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~--~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~L 322 (851)
+......+++.+....+++.++.++-+.... +...-..+..++++.|.+.|..++++++++.=+..|+-+|..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4555555666666666666666666665543 22222334456666677777777777777666666776777777777
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHc
Q 038852 323 LEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKH 369 (851)
Q Consensus 323 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~ 369 (851)
+..+.+.|++..|.+++..|...+... +..++...+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~-----~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFD-----NPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccC-----CchHHHHHHHHHHHh
Confidence 777777777777777766665544332 344444444444444
No 212
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.61 E-value=0.016 Score=58.30 Aligned_cols=64 Identities=20% Similarity=0.221 Sum_probs=45.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCC
Q 038852 321 TLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPK 387 (851)
Q Consensus 321 ~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~ 387 (851)
.+++.|.+.|.+..|..-+++|++.-..- ......+..|..+|...|..++|.+.-.-+....+
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t---~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p 235 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDT---SAVREALARLEEAYYALGLTDEAKKTAKVLGANYP 235 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccc---cchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Confidence 36777888888888888888888752221 11345677788888888888888777666654433
No 213
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.61 E-value=0.014 Score=63.01 Aligned_cols=173 Identities=16% Similarity=0.120 Sum_probs=114.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHH
Q 038852 355 NSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCE---NEMLEEAEKLLREISTKSLSPDVT 431 (851)
Q Consensus 355 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~ 431 (851)
+..+...++..|....+++..+++++.+...+... +.-...+-..++-++.+ .|+.++|++++..++.....++..
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~-~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCD-VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccc-hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 55667778888999999999999999886653222 22233334455666777 899999999999866666667888
Q ss_pred HHHHHHHHHHH---------cCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCC-HH---HHHHHH----HHHhhC
Q 038852 432 TFRTLIDAYLK---------VERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGK-VA---ECAPIL----TKMGEK 494 (851)
Q Consensus 432 ~~~~Ll~~~~~---------~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~-~~---~A~~ll----~~m~~~ 494 (851)
+|..++..|.. ....++|+..|.+..+... ....-.| ++..+...|. ++ +..++- ..+.++
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN-~AtLL~~~g~~~~~~~el~~i~~~l~~llg~k 296 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP-DYYSGIN-AATLLMLAGHDFETSEELRKIGVKLSSLLGRK 296 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc-cccchHH-HHHHHHHcCCcccchHHHHHHHHHHHHHHHhh
Confidence 89888887743 2347889999999888652 1111112 2233333443 22 222222 112223
Q ss_pred C---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038852 495 D---PKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYG 530 (851)
Q Consensus 495 ~---~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g 530 (851)
| -..|...+.+++.++.-.|++++|...+++|.+..
T Consensus 297 g~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 297 GSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 3 23466677788999999999999999999999763
No 214
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.0024 Score=65.53 Aligned_cols=117 Identities=15% Similarity=0.170 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHH
Q 038852 157 DAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAG---RIGEAVDL 233 (851)
Q Consensus 157 ~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g---~~~~A~~l 233 (851)
+.+.-++.-+..+. -|+..|..|+.+|...|+++.|...|.++.+..|. |...+..++.++.... +..++.++
T Consensus 140 ~l~a~Le~~L~~nP--~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~--n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 140 ALIARLETHLQQNP--GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD--NPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 33334444444332 47888999999999999999999999999999877 6667777777776543 46789999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc
Q 038852 234 LRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLV 278 (851)
Q Consensus 234 ~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~ 278 (851)
|+++++.+.. |..+...|...+...|++.+|...|+.|++....
T Consensus 216 l~~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 216 LRQALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 9999998766 8888888999999999999999999999987554
No 215
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.076 Score=60.33 Aligned_cols=159 Identities=13% Similarity=0.107 Sum_probs=78.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc---------C--C-----hHHHHHHHHHHHHhCCC
Q 038852 144 AIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDE---------G--K-----VDEGMNVFRRIIETAPV 207 (851)
Q Consensus 144 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~---------g--~-----~~~A~~l~~~~~~~~~~ 207 (851)
.+-..|+..|+|++|+++--..-....+.++...+.+++.-|... + . -++-..++++|+.+.-.
T Consensus 64 ~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl~ 143 (929)
T KOG2062|consen 64 LASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKNPEQKSPIDQRLRDIVERMIQKCLD 143 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHhhh
Confidence 344567888999999988665533444555555555554433322 1 0 22344555555554311
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCccchhhHH
Q 038852 208 GPSSNTYRHLTKGFVDAGRIGEAVDLLRDM-LSRQLGADSLVYNNLISGFLNLGN-LEKANELFDELKQRCLVYDGVVNA 285 (851)
Q Consensus 208 ~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m-~~~g~~pd~~~~~~Li~~~~~~g~-~~~A~~~~~~~~~~~~~~d~~~~~ 285 (851)
+...+ .+|.......+ +++++++ ++.+. +....+.++..+....+ .+--.++++.+++.-......-|.
T Consensus 144 --d~e~~-~aiGia~E~~r----ld~ie~Ail~~d~--~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PDy~ 214 (929)
T KOG2062|consen 144 --DNEYK-QAIGIAFETRR----LDIIEEAILKSDS--VIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPDYF 214 (929)
T ss_pred --hhHHH-HHHhHHhhhhh----HHHHHHHhccccc--cchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCCee
Confidence 22222 22222222222 2333332 22221 22234444554444433 333444555444432222223345
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhc
Q 038852 286 TFMEWWFNQGKDKEAMQSYKSLMERN 311 (851)
Q Consensus 286 ~li~~~~~~g~~~~A~~l~~~~~~~~ 311 (851)
.+..+|.-..+.+.+.++++++.+.+
T Consensus 215 ~vc~c~v~Ldd~~~va~ll~kL~~e~ 240 (929)
T KOG2062|consen 215 SVCQCYVFLDDAEAVADLLEKLVKED 240 (929)
T ss_pred eeeeeeEEcCCHHHHHHHHHHHHhcc
Confidence 56677777888888888888888754
No 216
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.58 E-value=0.056 Score=57.14 Aligned_cols=159 Identities=18% Similarity=0.211 Sum_probs=87.3
Q ss_pred HHHcCCHHHHHHHHHHHHHcCC--CCCH-----HHHHHHHHHHHHcC-ChhHHHHHHHHHHHc----C---CCCCC----
Q 038852 114 LIRAGDLDAASYLARQAVFSRI--RPTV-----FTCNAIIAAMYRAK-RYDDAVALFKYFFDQ----A---DIVPN---- 174 (851)
Q Consensus 114 l~~~g~~~~A~~l~~~~~~~~~--~~~~-----~~~~~li~~~~~~g-~~~~A~~l~~~~~~~----~---~~~pd---- 174 (851)
..+.|+++.|..++.++..... .|+. ..+..++....+.+ ++++|..++++..+. . ...++
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 3567899999988888765331 2221 12222333344556 888888888877553 1 11222
Q ss_pred -HHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 038852 175 -IVSYNNLINTYCDEGKV---DEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYN 250 (851)
Q Consensus 175 -~~~~~~Li~~~~~~g~~---~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~ 250 (851)
..++..|+.+|...+.. ++|.++++.+....+.. ..++..-++++.+.++.+++.+++.+|+..-.. ....+.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~--~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~ 159 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNK--PEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFD 159 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCC--cHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHH
Confidence 23556677777766654 34555666665554442 335545566666677788888888887765221 223333
Q ss_pred HHHHHHHhc--CCHHHHHHHHHHHHhc
Q 038852 251 NLISGFLNL--GNLEKANELFDELKQR 275 (851)
Q Consensus 251 ~Li~~~~~~--g~~~~A~~~~~~~~~~ 275 (851)
.++..+... ...+.|...++.++..
T Consensus 160 ~~l~~i~~l~~~~~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 160 SILHHIKQLAEKSPELAAFCLDYLLLN 186 (278)
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 333333211 2234455555555443
No 217
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.012 Score=67.64 Aligned_cols=142 Identities=17% Similarity=0.148 Sum_probs=92.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC
Q 038852 111 VQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGK 190 (851)
Q Consensus 111 l~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~ 190 (851)
..-|.+.|++++|..-+-+.+.. +++ ..+|.-|....+..+-..+++.+.+. |+. +...-..|+.+|.+.++
T Consensus 375 gd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~-gla-~~dhttlLLncYiKlkd 446 (933)
T KOG2114|consen 375 GDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKK-GLA-NSDHTTLLLNCYIKLKD 446 (933)
T ss_pred HHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHc-ccc-cchhHHHHHHHHHHhcc
Confidence 44567889999999888876622 122 23455556666777777777777553 432 33445679999999999
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 191 VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFD 270 (851)
Q Consensus 191 ~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~ 270 (851)
.++-.++.+... .+-. ..-....+..+.+.+-.++|..+-.+... +... +-..+-..+++++|++++.
T Consensus 447 ~~kL~efI~~~~-~g~~---~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~v---l~ille~~~ny~eAl~yi~ 514 (933)
T KOG2114|consen 447 VEKLTEFISKCD-KGEW---FFDVETALEILRKSNYLDEAELLATKFKK-----HEWV---LDILLEDLHNYEEALRYIS 514 (933)
T ss_pred hHHHHHHHhcCC-Ccce---eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHH---HHHHHHHhcCHHHHHHHHh
Confidence 998887776653 2211 11244567778888888888766554432 2333 3334456789999999887
Q ss_pred HH
Q 038852 271 EL 272 (851)
Q Consensus 271 ~~ 272 (851)
.+
T Consensus 515 sl 516 (933)
T KOG2114|consen 515 SL 516 (933)
T ss_pred cC
Confidence 65
No 218
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.22 Score=54.20 Aligned_cols=416 Identities=11% Similarity=0.022 Sum_probs=216.7
Q ss_pred HHHHHHHcC--ChhHHHHHHHHHHHcCCCC--CCHHHHHHHHHHH-HHcCChHHHHHHHHHHHHhCCCCCC-----HHHH
Q 038852 145 IIAAMYRAK--RYDDAVALFKYFFDQADIV--PNIVSYNNLINTY-CDEGKVDEGMNVFRRIIETAPVGPS-----SNTY 214 (851)
Q Consensus 145 li~~~~~~g--~~~~A~~l~~~~~~~~~~~--pd~~~~~~Li~~~-~~~g~~~~A~~l~~~~~~~~~~~p~-----~~~~ 214 (851)
+...+...| ++..+++.++.++.- .+. ..+.+..-|+..+ .-..+++.|..-++++......-|+ ..++
T Consensus 13 lAe~~rt~~PPkIkk~IkClqA~~~~-~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~ 91 (629)
T KOG2300|consen 13 LAEHFRTSGPPKIKKCIKCLQAIFQF-QISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAA 91 (629)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHH
Confidence 344444556 677788887766431 110 1123333333333 3346788888887776544322222 2467
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHhcCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHH--
Q 038852 215 RHLTKGFVDAG-RIGEAVDLLRDMLSRQLG-A--DSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFM-- 288 (851)
Q Consensus 215 ~~Li~~~~~~g-~~~~A~~l~~~m~~~g~~-p--d~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li-- 288 (851)
..|..+|.... .+..+..+++++++..-. | ......-|+....-..|+..|.+++.--.+.. .+-...|..++
T Consensus 92 SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sA-d~~~~~ylr~~ft 170 (629)
T KOG2300|consen 92 SLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESA-DHICFPYLRMLFT 170 (629)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhcccccc-chhhhHHHHHHHH
Confidence 78888888877 888999999999875322 1 11233446777778889999988854321111 00111121111
Q ss_pred ----HHHHHcCCH---HHHHHHHHHHHHhcCCCCHH--------HHHHHHHHHHhCCCHHHHHHHHHHHHH---cCCCCC
Q 038852 289 ----EWWFNQGKD---KEAMQSYKSLMERNFRMTPA--------TCNTLLEVLLKHEKKEEAQALFEQMLD---NHQPPN 350 (851)
Q Consensus 289 ----~~~~~~g~~---~~A~~l~~~~~~~~~~~~~~--------~~~~Li~~~~~~g~~~~A~~l~~~m~~---~~~~p~ 350 (851)
.......|. +.+......+.+.. ..|.. ..+.-+.-|...|+...+...++.+.+ .+..++
T Consensus 171 ls~~~ll~me~d~~dV~~ll~~~~qi~~n~-~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~ 249 (629)
T KOG2300|consen 171 LSMLMLLIMERDDYDVEKLLQRCGQIWQNI-SSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSS 249 (629)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHhcc-CCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCC
Confidence 112222333 34444444454432 22221 112223345566777777776665543 222210
Q ss_pred C------C-ccCHHH-------------HHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCcc-CHHHH--------HHH
Q 038852 351 I------Q-AVNSDT-------------FNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAM-DVAGY--------NNI 401 (851)
Q Consensus 351 ~------~-~~~~~~-------------~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-d~~~~--------~~l 401 (851)
. . ...... |......-.-.|-+++|.++-++++.......-.+ +..++ ..+
T Consensus 250 ~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~i 329 (629)
T KOG2300|consen 250 RGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHI 329 (629)
T ss_pred CCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 0 0 001111 11111111234556666665555433211111111 12222 222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCC--H------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc--chhHHHH
Q 038852 402 IARYCENEMLEEAEKLLREISTKSL-SPD--V------TTFRTLIDAYLKVERIDDALELFNRMVESGLRV--VVSFGTK 470 (851)
Q Consensus 402 i~~~~~~g~~~~A~~l~~~m~~~g~-~pd--~------~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~ 470 (851)
+.+-.-.|++.+|++-+.+|.+... .|. . .....++-.++..+.++.|+.-|..+.+.-... .......
T Consensus 330 v~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nln 409 (629)
T KOG2300|consen 330 VMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLN 409 (629)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 2233348999999999998876421 122 1 122334445566788999999999888753322 2333345
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCC-CHHHH---HHHHHH--HHhcCChHHHHHHHHHHHHcCCCCC-----HHHHH
Q 038852 471 VFNELITKGKVAECAPILTKMGEKDPKP-DFLIY---DVVVRG--LCNEGLFDMSKDIVDQMMKYGVGIT-----PALQD 539 (851)
Q Consensus 471 L~~~~~~~g~~~~A~~ll~~m~~~~~~p-d~~~~---~~ll~a--~~~~g~~~~A~~~~~~m~~~g~~~~-----~~~~~ 539 (851)
++..|.+.|+-++-.++++.+--.+-.+ ..... ..++.+ ....+++.+|..++.+.++..-..| .-...
T Consensus 410 lAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~Lv 489 (629)
T KOG2300|consen 410 LAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLV 489 (629)
T ss_pred HHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Confidence 6778889888888777777664332111 11100 112222 2467999999999999876431111 11122
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhhh
Q 038852 540 FVRETFGKAGRGEEIERVLNADRW 563 (851)
Q Consensus 540 ~L~~~~~~~G~~~eA~~ll~~~~~ 563 (851)
.|..++...|+..|+.+.+.-...
T Consensus 490 LLs~v~lslgn~~es~nmvrpamq 513 (629)
T KOG2300|consen 490 LLSHVFLSLGNTVESRNMVRPAMQ 513 (629)
T ss_pred HHHHHHHHhcchHHHHhccchHHH
Confidence 366677788998888887765443
No 219
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.51 E-value=0.00041 Score=56.01 Aligned_cols=65 Identities=20% Similarity=0.373 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhc
Q 038852 210 SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLG-NLEKANELFDELKQR 275 (851)
Q Consensus 210 ~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g-~~~~A~~~~~~~~~~ 275 (851)
+..+|..++..+...|++++|+..|+++++.+.. +..+|..++.+|.+.| ++++|++.|+++++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4456777777777777777777777777776554 6667777777777777 577777777766654
No 220
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.51 E-value=0.0041 Score=56.05 Aligned_cols=91 Identities=20% Similarity=0.234 Sum_probs=41.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHH
Q 038852 289 EWWFNQGKDKEAMQSYKSLMERNFRMT--PATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNEC 366 (851)
Q Consensus 289 ~~~~~~g~~~~A~~l~~~~~~~~~~~~--~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~ 366 (851)
.++-..|+.++|+.+|++.+..|.... ...+..+...|...|++++|+.+|++.+........ +......+..++
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~---~~~l~~f~Al~L 85 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDEL---NAALRVFLALAL 85 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc---cHHHHHHHHHHH
Confidence 334444444444444444444443222 123444555555566666666666555543211100 222333334455
Q ss_pred HHcCChHHHHHHHHHh
Q 038852 367 FKHGKFSEAIETFKKA 382 (851)
Q Consensus 367 ~~~g~~~~A~~~~~~~ 382 (851)
...|+.++|++++-..
T Consensus 86 ~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEA 101 (120)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 5556666655555443
No 221
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.50 E-value=0.31 Score=55.53 Aligned_cols=167 Identities=18% Similarity=0.138 Sum_probs=109.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCC-----HHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCCCc
Q 038852 284 NATFMEWWFNQGKDKEAMQSYKSLMERN-FRMT-----PATCNTLLEVLLK----HEKKEEAQALFEQMLDNHQPPNIQA 353 (851)
Q Consensus 284 ~~~li~~~~~~g~~~~A~~l~~~~~~~~-~~~~-----~~~~~~Li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~ 353 (851)
+..++....-.||-+.+++++.+..+.+ +.-. ...|..++..++. ..+.+.|.++++.+... -|+
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~--- 265 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPN--- 265 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCC---
Confidence 3344555555688888888888766532 2111 1223333433333 45688999999999885 342
Q ss_pred cCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038852 354 VNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTF 433 (851)
Q Consensus 354 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~ 433 (851)
........++.+...|++++|++.|+++...... --......+..++.++....++++|.+.|.++.+..-- ...+|
T Consensus 266 -s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~-~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y 342 (468)
T PF10300_consen 266 -SALFLFFEGRLERLKGNLEEAIESFERAIESQSE-WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFY 342 (468)
T ss_pred -cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhh-HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHH
Confidence 4455566678889999999999999987642111 11223455667777888899999999999999875322 33344
Q ss_pred HH-HHHHHHHcCCH-------HHHHHHHHHHHH
Q 038852 434 RT-LIDAYLKVERI-------DDALELFNRMVE 458 (851)
Q Consensus 434 ~~-Ll~~~~~~g~~-------~~A~~~~~~m~~ 458 (851)
.. .+.++...++. ++|.++|.++..
T Consensus 343 ~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 343 AYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 33 34455567777 888888888764
No 222
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.49 E-value=0.0063 Score=57.47 Aligned_cols=132 Identities=14% Similarity=0.107 Sum_probs=105.1
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT 184 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~ 184 (851)
.+-..+..++.+.|++.+|+..|++.+..-..-|......+..+....+++.+|...++++.+...-.....+...+.+.
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~ 169 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFART 169 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHH
Confidence 35567889999999999999999998866566788888899999999999999999999998765433344456778899
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 038852 185 YCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLS 239 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~ 239 (851)
|...|++++|+..|+.++... |+...-......+.+.|+.+++..-+.++.+
T Consensus 170 laa~g~~a~Aesafe~a~~~y---pg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 170 LAAQGKYADAESAFEVAISYY---PGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHhcCCchhHHHHHHHHHHhC---CCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 999999999999999998864 3444444455667888888877666555544
No 223
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.49 E-value=0.0025 Score=66.25 Aligned_cols=91 Identities=18% Similarity=0.269 Sum_probs=43.4
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCH
Q 038852 150 YRAKRYDDAVALFKYFFDQADIVP-NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGP-SSNTYRHLTKGFVDAGRI 227 (851)
Q Consensus 150 ~~~g~~~~A~~l~~~~~~~~~~~p-d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p-~~~~~~~Li~~~~~~g~~ 227 (851)
.+.|++++|+..|+.+++...-.+ ...++..++.+|...|++++|+..|+++++..+..+ ...++..++.++...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 344555555555555554432111 012344455555555555555555555554433321 123344444455555555
Q ss_pred HHHHHHHHHHHhc
Q 038852 228 GEAVDLLRDMLSR 240 (851)
Q Consensus 228 ~~A~~l~~~m~~~ 240 (851)
++|.++|+++++.
T Consensus 234 ~~A~~~~~~vi~~ 246 (263)
T PRK10803 234 AKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555544
No 224
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.059 Score=55.69 Aligned_cols=159 Identities=13% Similarity=0.090 Sum_probs=118.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-C--CccchhhHHHHHHHHHHcCC
Q 038852 220 GFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQR-C--LVYDGVVNATFMEWWFNQGK 296 (851)
Q Consensus 220 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~-~--~~~d~~~~~~li~~~~~~g~ 296 (851)
.+...|++.+|...++++++.-+. |...+.-.-++|...|+.+.-+..+++++.. + ......+...+.-++..+|-
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~Pt-Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDYPT-DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred HhhccccccHHHHHHHHHHHhCch-hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 345678999999999999987555 8888888889999999999999999988764 2 22234445556666788999
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHH
Q 038852 297 DKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAI 376 (851)
Q Consensus 297 ~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~ 376 (851)
+++|++.-++.++.+. .|.-.-.++...+...|++.++.+++.+-.+.-... ...-...|-..+..+...+.++.|+
T Consensus 191 y~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s--~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 191 YDDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS--WMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred chhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh--hHHHhhhhHHHHHhhhcccchhHHH
Confidence 9999999999998874 455566678888889999999999887654321110 0001234555666777889999999
Q ss_pred HHHHHh
Q 038852 377 ETFKKA 382 (851)
Q Consensus 377 ~~~~~~ 382 (851)
++|+.-
T Consensus 268 eIyD~e 273 (491)
T KOG2610|consen 268 EIYDRE 273 (491)
T ss_pred HHHHHH
Confidence 999864
No 225
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.47 E-value=0.17 Score=59.33 Aligned_cols=233 Identities=15% Similarity=0.125 Sum_probs=126.8
Q ss_pred HHHcCChHHHHHHHHHHHHhCCC---CCCH---HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcC----CCCCHHHHHHHH
Q 038852 185 YCDEGKVDEGMNVFRRIIETAPV---GPSS---NTYRHLT-KGFVDAGRIGEAVDLLRDMLSRQ----LGADSLVYNNLI 253 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~~~---~p~~---~~~~~Li-~~~~~~g~~~~A~~l~~~m~~~g----~~pd~~~~~~Li 253 (851)
.....++++|..+++++...-+. .+.. ..|+.|- .+....|++++|+++.+..+..- .......+..++
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567888888888887654322 1111 1333332 23445788899998888877642 223556777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHH-----HHHHHcCC--HHHHHHHHHHHHHhcC---CC---CHHHHH
Q 038852 254 SGFLNLGNLEKANELFDELKQRCLVYDGVVNATFM-----EWWFNQGK--DKEAMQSYKSLMERNF---RM---TPATCN 320 (851)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li-----~~~~~~g~--~~~A~~l~~~~~~~~~---~~---~~~~~~ 320 (851)
.+..-.|++++|..+.....+.....|...+..++ ..+...|. +.+.+..|........ .. -..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 88888899999998888777654444444443332 34566673 3333444444333211 11 112333
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccC-HHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHH
Q 038852 321 TLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVN-SDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYN 399 (851)
Q Consensus 321 ~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~-~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~ 399 (851)
.++.++.+ ++.+..-.....+.+..-.....+ ...+..|+.++...|+.++|...++++...........+..+-.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 34444444 444433333332222111000001 11234678888899999999998888765544433333443333
Q ss_pred HHHHH--HHhcCCHHHHHHHHHH
Q 038852 400 NIIAR--YCENEMLEEAEKLLRE 420 (851)
Q Consensus 400 ~li~~--~~~~g~~~~A~~l~~~ 420 (851)
.++.+ ....|+.++|.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 33333 2346777777776655
No 226
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.43 E-value=0.42 Score=55.53 Aligned_cols=131 Identities=10% Similarity=0.129 Sum_probs=64.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---HcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMY---RAKRYDDAVALFKYFFDQADIVPNIVSYNNLIN 183 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~ 183 (851)
...+|..+.+.|++++....-..|...- +.+...|...+.... ..++..++..+|++.+.... ++..|.-.+.
T Consensus 116 ~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~---~v~iw~e~~~ 191 (881)
T KOG0128|consen 116 MVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYN---SVPIWEEVVN 191 (881)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccc---cchHHHHHHH
Confidence 3456666667777766555444444322 334444443333322 23666677777777654332 3333433333
Q ss_pred HH-------HHcCChHHHHHHHHHHHHhCCCCCC--HHHH---HHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 038852 184 TY-------CDEGKVDEGMNVFRRIIETAPVGPS--SNTY---RHLTKGFVDAGRIGEAVDLLRDMLSRQ 241 (851)
Q Consensus 184 ~~-------~~~g~~~~A~~l~~~~~~~~~~~p~--~~~~---~~Li~~~~~~g~~~~A~~l~~~m~~~g 241 (851)
.+ .+.++++....+|+++++.-+...+ ...| ..+-..|..+-..+..+.+|..-+..+
T Consensus 192 y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~ 261 (881)
T KOG0128|consen 192 YLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP 261 (881)
T ss_pred HHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 22 2335666777777777665433211 1122 222233334444455666666665554
No 227
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.42 E-value=0.00048 Score=54.90 Aligned_cols=56 Identities=27% Similarity=0.455 Sum_probs=24.2
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 038852 147 AAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIET 204 (851)
Q Consensus 147 ~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~ 204 (851)
..+.+.|++++|+++|+++++..+ -+...|..++.++...|++++|+.+|+++++.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDP--DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCST--THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444444444444444443221 13334444444444444444444444444443
No 228
>PRK15331 chaperone protein SicA; Provisional
Probab=97.40 E-value=0.003 Score=59.29 Aligned_cols=92 Identities=15% Similarity=0.079 Sum_probs=60.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038852 180 NLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL 259 (851)
Q Consensus 180 ~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~ 259 (851)
..+.-+...|++++|..+|.-+...++. |...|..|+.++-..+++++|+.+|..+...+.. |...+..++.+|...
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~--n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l 118 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFY--NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHh
Confidence 3344455667777777777776666555 5556667777777777777777777766665543 555555667777777
Q ss_pred CCHHHHHHHHHHHHh
Q 038852 260 GNLEKANELFDELKQ 274 (851)
Q Consensus 260 g~~~~A~~~~~~~~~ 274 (851)
|+.+.|+..|..+++
T Consensus 119 ~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 119 RKAAKARQCFELVNE 133 (165)
T ss_pred CCHHHHHHHHHHHHh
Confidence 777777777766665
No 229
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.40 E-value=0.0077 Score=54.28 Aligned_cols=92 Identities=24% Similarity=0.276 Sum_probs=43.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc--cchhhHHHHHHHHH
Q 038852 217 LTKGFVDAGRIGEAVDLLRDMLSRQLGAD--SLVYNNLISGFLNLGNLEKANELFDELKQRCLV--YDGVVNATFMEWWF 292 (851)
Q Consensus 217 Li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~--~d~~~~~~li~~~~ 292 (851)
+..++-..|+.++|+.+|++.++.|+..+ ...+..+...|...|++++|+.+|++....... .+..+...+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34444555555555555555555554422 134444555555555555555555555543211 11222222333445
Q ss_pred HcCCHHHHHHHHHHHH
Q 038852 293 NQGKDKEAMQSYKSLM 308 (851)
Q Consensus 293 ~~g~~~~A~~l~~~~~ 308 (851)
..|+.++|++.+-..+
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5555555555554433
No 230
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.40 E-value=0.018 Score=62.85 Aligned_cols=60 Identities=18% Similarity=0.247 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 399 NNIIARYCENEMLEEAEKLLREISTKSLS-PDVTTFRTLIDAYLKVERIDDALELFNRMVE 458 (851)
Q Consensus 399 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~ 458 (851)
..|..++-+.|+.+||++.|++|.+.... .+..+...|+.++...+.+.++..++.+.-+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 44555556667777777777776653211 1233555666677777777777766666543
No 231
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.40 E-value=0.46 Score=55.18 Aligned_cols=401 Identities=7% Similarity=-0.027 Sum_probs=197.0
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH---HcCChHHHHHHHHHHHHhCCCCCCHH
Q 038852 136 RPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYC---DEGKVDEGMNVFRRIIETAPVGPSSN 212 (851)
Q Consensus 136 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~---~~g~~~~A~~l~~~~~~~~~~~p~~~ 212 (851)
..+...++.||..+.+.|++++....-..|.+...+ +...|...+.... ..++..++.++|++.+... . ++.
T Consensus 110 ~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl--~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy-~--~v~ 184 (881)
T KOG0128|consen 110 SYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPL--PPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY-N--SVP 184 (881)
T ss_pred ccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc-c--cch
Confidence 345677888999999999998766665555443333 3445655444333 3377888889999887643 2 444
Q ss_pred HHHHHHHHHH-------HcCCHHHHHHHHHHHHhc-CCCC--CHHHHHH---HHHHHHhcCCHHHHHHHHHHHHhcCCcc
Q 038852 213 TYRHLTKGFV-------DAGRIGEAVDLLRDMLSR-QLGA--DSLVYNN---LISGFLNLGNLEKANELFDELKQRCLVY 279 (851)
Q Consensus 213 ~~~~Li~~~~-------~~g~~~~A~~l~~~m~~~-g~~p--d~~~~~~---Li~~~~~~g~~~~A~~~~~~~~~~~~~~ 279 (851)
.|...+..+. ..++++....+|.++++. |... -...|.. +-..|...-..+....+|..-+....
T Consensus 185 iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~-- 262 (881)
T KOG0128|consen 185 IWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPL-- 262 (881)
T ss_pred HHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccc--
Confidence 5555555444 346678888888887763 2111 1122322 22333444444566666666555442
Q ss_pred chhhHHHHHHHHH-------HcCCHHHHHHHHHHH-------HHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038852 280 DGVVNATFMEWWF-------NQGKDKEAMQSYKSL-------MERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDN 345 (851)
Q Consensus 280 d~~~~~~li~~~~-------~~g~~~~A~~l~~~~-------~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 345 (851)
|..+...-+.-.. ...+++.+.+-+.+. ..... .-...|..+++.+.+.|+.-....++++++..
T Consensus 263 D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~-~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E 341 (881)
T KOG0128|consen 263 DEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEP-IKDQEWMSYIDFEKKSGDPVRIQLIEERAVAE 341 (881)
T ss_pred hhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Confidence 2222221111111 122333333332222 22211 11245666777778888877777777777654
Q ss_pred CCCCCCCccCHHHHHHHHHHHH-HcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 038852 346 HQPPNIQAVNSDTFNIMVNECF-KHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEML-EEAEKLLREIST 423 (851)
Q Consensus 346 ~~~p~~~~~~~~~~~~L~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~-~~A~~l~~~m~~ 423 (851)
... +...|.......- ..+-.+.+...+.++....+- ....|...+.++.+.+.. ......|...+.
T Consensus 342 ~~~------~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~-----tgdL~~rallAleR~re~~~vI~~~l~~~ls 410 (881)
T KOG0128|consen 342 MVL------DRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPW-----TGDLWKRALLALERNREEITVIVQNLEKDLS 410 (881)
T ss_pred ccc------cHHHHhhhhhhcccccccccccccccchhhcCCch-----HHHHHHHHHHHHHhcCcchhhHHHHHHHHHH
Confidence 322 2222222111100 011111122222222211111 223333333333333321 112222222222
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-------------CHHHHHHHHHHHHHcCCccchhHHHHHHHHH-HHcCCHHHHHHHHH
Q 038852 424 KSLSPDVTTFRTLIDAYLKVE-------------RIDDALELFNRMVESGLRVVVSFGTKVFNEL-ITKGKVAECAPILT 489 (851)
Q Consensus 424 ~g~~pd~~~~~~Ll~~~~~~g-------------~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~-~~~g~~~~A~~ll~ 489 (851)
.++. .++..+..+.+++ .+..|...|.............+.......+ .-.++.+.|..+|+
T Consensus 411 ~~~~----l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn 486 (881)
T KOG0128|consen 411 MTVE----LHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWN 486 (881)
T ss_pred HHHH----HHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 2111 1111111111111 2344555555444432222222222222322 34688999999999
Q ss_pred HHhhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 038852 490 KMGEKDPKPDFL-IYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGIT--PALQDFVRETFGKAGRGEEIERVLNA 560 (851)
Q Consensus 490 ~m~~~~~~pd~~-~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~L~~~~~~~G~~~eA~~ll~~ 560 (851)
.....+.. +.. .|...+..-...|+...++.+++.+...-..++ ..++.++.......|.++.+.....+
T Consensus 487 ~imty~~~-~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~ 559 (881)
T KOG0128|consen 487 FIMTYGGG-SIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPEK 559 (881)
T ss_pred ccccCCcc-hHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHHh
Confidence 98877544 333 566666666677999999998888876544443 33444455566666777766555444
No 232
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.40 E-value=0.00062 Score=54.73 Aligned_cols=52 Identities=21% Similarity=0.477 Sum_probs=28.5
Q ss_pred HcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 038852 187 DEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSR 240 (851)
Q Consensus 187 ~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 240 (851)
..|++++|+++|++++..+|. +..++..++.+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD--NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT--SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445555555555555555544 5555555555555555555555555555554
No 233
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.39 E-value=0.33 Score=53.27 Aligned_cols=409 Identities=11% Similarity=0.103 Sum_probs=209.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038852 124 SYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIE 203 (851)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~ 203 (851)
..+++.+... ..-|+..|...+..+-+.+.+.+...+|..|+..++..+|...+.+.-. |...-+++.|..+|.+.++
T Consensus 91 v~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~we-fe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 91 VFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWE-FEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhH-HhhccchHHHHHHHHHHhh
Confidence 3445555433 3559999999998888888899999999999998887777655543322 3333449999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH---------HHHHHHH------HHHHhcCC------H
Q 038852 204 TAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADS---------LVYNNLI------SGFLNLGN------L 262 (851)
Q Consensus 204 ~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~---------~~~~~Li------~~~~~~g~------~ 262 (851)
.++..|. .|....+.-. ..+.++..+-...|...+. ..|.... ....+.-. +
T Consensus 169 ~npdsp~--Lw~eyfrmEL-----~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~ 241 (568)
T KOG2396|consen 169 FNPDSPK--LWKEYFRMEL-----MYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKF 241 (568)
T ss_pred cCCCChH--HHHHHHHHHH-----HHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHH
Confidence 8877443 4433322111 0011111111110100000 0111100 00000000 0
Q ss_pred HHH----HHHHHHHHhcCCccchhhHHHHH----HHHHH---------------cCCHHHHHHHHHHHHHhcCCCCHHHH
Q 038852 263 EKA----NELFDELKQRCLVYDGVVNATFM----EWWFN---------------QGKDKEAMQSYKSLMERNFRMTPATC 319 (851)
Q Consensus 263 ~~A----~~~~~~~~~~~~~~d~~~~~~li----~~~~~---------------~g~~~~A~~l~~~~~~~~~~~~~~~~ 319 (851)
+.+ ..+++.+...++. +..++..+. +++.. .-+.+....+|++.++.- ++...|
T Consensus 242 d~~kel~k~i~d~~~~~~~~-np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l--~t~sm~ 318 (568)
T KOG2396|consen 242 DFLKELQKNIIDDLQSKAPD-NPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTL--PTESMW 318 (568)
T ss_pred HHHHHHHHHHHHHHhccCCC-CCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHh--hHHHHH
Confidence 111 1122222222221 333333322 22211 112333445565555431 233456
Q ss_pred HHHHHHHHhCC------CHHHHHHHHHHHHHcCC-CCCCCccCHHHHHHHHHHHHHcCChHH-HHHHHHHhccCCCCCCC
Q 038852 320 NTLLEVLLKHE------KKEEAQALFEQMLDNHQ-PPNIQAVNSDTFNIMVNECFKHGKFSE-AIETFKKAGTHPKSKPF 391 (851)
Q Consensus 320 ~~Li~~~~~~g------~~~~A~~l~~~m~~~~~-~p~~~~~~~~~~~~L~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~ 391 (851)
+..|..|...- .....+.+|+.+.+.+. .+. ...-|..+..+++....-.+ |..+..+..
T Consensus 319 e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~----~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f-------- 386 (568)
T KOG2396|consen 319 ECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSEC----LYKQYSVLLLCLNTLNEAREVAVKLTTELF-------- 386 (568)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccc----hHHHHHHHHHHHhccchHhHHHHHhhHHHh--------
Confidence 66666554332 34445556666554332 221 44556666666665554333 333332332
Q ss_pred ccCHHHHHHHHHHHHhc-CCHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHH--HHHHHHHHHcCCccchh
Q 038852 392 AMDVAGYNNIIARYCEN-EMLEE-AEKLLREISTKSLSPDVTTFRTLIDAYLKVER-IDDA--LELFNRMVESGLRVVVS 466 (851)
Q Consensus 392 ~~d~~~~~~li~~~~~~-g~~~~-A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~-~~~A--~~~~~~m~~~~~~~~~~ 466 (851)
.-|...|..-+....+. .++.- -+++|..+...-..+-...|+... .++ .... ..++..+...+-.....
T Consensus 387 ~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~~~~~~t 461 (568)
T KOG2396|consen 387 RDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVIGADSVT 461 (568)
T ss_pred cchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhcCCceee
Confidence 12666666555555432 12221 122223333221222233444433 122 1111 12223333333233445
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHH
Q 038852 467 FGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLC--NEGLFDMSKDIVDQMMK-YGVGITPALQDFVRE 543 (851)
Q Consensus 467 ~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~--~~g~~~~A~~~~~~m~~-~g~~~~~~~~~~L~~ 543 (851)
+-+.+++.+...|-+++|..++.++... ..++...|..++..-. ..-+...+.++|+.|+. .| -+++++.-...
T Consensus 462 l~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~ 538 (568)
T KOG2396|consen 462 LKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMK 538 (568)
T ss_pred hhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHH
Confidence 5566788889999999999999999876 3457777777765432 22348889999999974 55 67777776666
Q ss_pred HHHhcCCHHHHHHHHHhhhhc
Q 038852 544 TFGKAGRGEEIERVLNADRWG 564 (851)
Q Consensus 544 ~~~~~G~~~eA~~ll~~~~~~ 564 (851)
.-...|+.+.+-.++-+..+.
T Consensus 539 ~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 539 EELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred hhccCCCcccccHHHHHHHHh
Confidence 666888888887777766543
No 234
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.38 E-value=0.00059 Score=54.35 Aligned_cols=59 Identities=20% Similarity=0.375 Sum_probs=41.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 038852 181 LINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQ 241 (851)
Q Consensus 181 Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g 241 (851)
++..+...|++++|+++|+++++..+. +..+|..++.++...|++++|+.+|+++++..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD--NPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT--HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 455667777777777777777776655 66677777777777777777777777776653
No 235
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.37 E-value=0.081 Score=61.67 Aligned_cols=147 Identities=13% Similarity=0.036 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----HcCChhHHHHHHHHHHHc---CCCCCCHHHHHHHHHHHHHcC--
Q 038852 120 LDAASYLARQAVFSRIRPTVFTCNAIIAAMY-----RAKRYDDAVALFKYFFDQ---ADIVPNIVSYNNLINTYCDEG-- 189 (851)
Q Consensus 120 ~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~-----~~g~~~~A~~l~~~~~~~---~~~~pd~~~~~~Li~~~~~~g-- 189 (851)
...|.++++.+.+.+ ++.....++.+|. ...|.+.|+.+|+.+.+. .-..-+....+.+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 456667777666554 3333333333333 345777777777777541 000012234555666666532
Q ss_pred ---ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----c
Q 038852 190 ---KVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDA---GRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLN----L 259 (851)
Q Consensus 190 ---~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~---g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~----~ 259 (851)
+.+.|+.+|.+.-+.+ +...-..|+.++... .++..|.++|..+.+.|.. ..+..+..+|.. .
T Consensus 305 ~~~d~~~A~~~~~~aA~~g----~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG----NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred ccccHHHHHHHHHHHHhcC----CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 5566777777766554 222333344444432 2566777777777776633 233333333322 2
Q ss_pred CCHHHHHHHHHHHHhcC
Q 038852 260 GNLEKANELFDELKQRC 276 (851)
Q Consensus 260 g~~~~A~~~~~~~~~~~ 276 (851)
.+.++|..+|+++.+++
T Consensus 378 r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG 394 (552)
T ss_pred CCHHHHHHHHHHHHHcc
Confidence 35677777777777665
No 236
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.36 E-value=0.0031 Score=65.54 Aligned_cols=94 Identities=13% Similarity=0.165 Sum_probs=55.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHH
Q 038852 291 WFNQGKDKEAMQSYKSLMERNFRMT--PATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFK 368 (851)
Q Consensus 291 ~~~~g~~~~A~~l~~~~~~~~~~~~--~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~ 368 (851)
+.+.|++++|+..|+.+++..+... ..++..++.+|...|++++|+..|+.+++....-. ....++..++.+|..
T Consensus 153 ~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~---~~~dAl~klg~~~~~ 229 (263)
T PRK10803 153 VQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP---KAADAMFKVGVIMQD 229 (263)
T ss_pred HHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc---chhHHHHHHHHHHHH
Confidence 3445666666666666665544321 24555667777777777777777777765422111 134556666666767
Q ss_pred cCChHHHHHHHHHhccCCC
Q 038852 369 HGKFSEAIETFKKAGTHPK 387 (851)
Q Consensus 369 ~g~~~~A~~~~~~~~~~~~ 387 (851)
.|+.++|.++|+++.+..+
T Consensus 230 ~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 230 KGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred cCCHHHHHHHHHHHHHHCc
Confidence 7777777777776655544
No 237
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0033 Score=66.88 Aligned_cols=93 Identities=12% Similarity=0.170 Sum_probs=44.3
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCC----C---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH
Q 038852 146 IAAMYRAKRYDDAVALFKYFFDQADIV----P---------NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSN 212 (851)
Q Consensus 146 i~~~~~~g~~~~A~~l~~~~~~~~~~~----p---------d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~ 212 (851)
...|++.|+|..|...|++++...... + -..+++.|+.+|.+.+++.+|+...+++++.++. |+.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~--N~K 292 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN--NVK 292 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC--chh
Confidence 445667777777777777664321100 0 0123344444444444444444444444444322 444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 038852 213 TYRHLTKGFVDAGRIGEAVDLLRDMLSR 240 (851)
Q Consensus 213 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 240 (851)
....-+.+|...|+++.|+..|.++++.
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 4444444444444444444444444444
No 238
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.097 Score=60.07 Aligned_cols=159 Identities=12% Similarity=0.205 Sum_probs=99.3
Q ss_pred CccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHH
Q 038852 104 RLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRP---TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNN 180 (851)
Q Consensus 104 ~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~ 180 (851)
..+.-..++=+++.+.+++|.++.+... +..+ -...+..+|..+.-.|++++|-.+.-.|.. .+...|..
T Consensus 356 ~~~~~Dhi~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g-----n~~~eWe~ 428 (846)
T KOG2066|consen 356 ERDQEDHIDWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG-----NNAAEWEL 428 (846)
T ss_pred ecCcchhHHHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc-----chHHHHHH
Confidence 3456677888999999999999887754 2222 345778888889999999999999888854 36667777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------------HhcCCC
Q 038852 181 LINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDM-----------------LSRQLG 243 (851)
Q Consensus 181 Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m-----------------~~~g~~ 243 (851)
.+..+...+.......+ +.. ++...+...|..++..+.. .+...-.++..+- .+..-.
T Consensus 429 ~V~~f~e~~~l~~Ia~~---lPt-~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se 503 (846)
T KOG2066|consen 429 WVFKFAELDQLTDIAPY---LPT-GPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSE 503 (846)
T ss_pred HHHHhccccccchhhcc---CCC-CCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhcc
Confidence 77777776665443322 221 1122344566666666655 2222222211110 001111
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038852 244 ADSLVYNNLISGFLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 244 pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~ 275 (851)
+......|+..|...+++.+|..++-.+...
T Consensus 504 -~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~ 534 (846)
T KOG2066|consen 504 -STALLEVLAHLYLYDNKYEKALPIYLKLQDK 534 (846)
T ss_pred -chhHHHHHHHHHHHccChHHHHHHHHhccCh
Confidence 2234455888899999999998888766543
No 239
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.33 E-value=0.00035 Score=47.58 Aligned_cols=33 Identities=33% Similarity=0.679 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038852 397 GYNNIIARYCENEMLEEAEKLLREISTKSLSPD 429 (851)
Q Consensus 397 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 429 (851)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 477777777777777777777777777777665
No 240
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.15 Score=50.23 Aligned_cols=17 Identities=18% Similarity=0.583 Sum_probs=7.8
Q ss_pred cCCHHHHHHHHHHHHHc
Q 038852 443 VERIDDALELFNRMVES 459 (851)
Q Consensus 443 ~g~~~~A~~~~~~m~~~ 459 (851)
.+++.+|+++|+++...
T Consensus 167 leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 167 LEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 241
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.28 E-value=0.56 Score=55.12 Aligned_cols=234 Identities=15% Similarity=0.071 Sum_probs=125.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCccc----hh---hHHHH-HHHHHHcCCHHHHHHHHHHHHHhc----CCCCHHHHHHH
Q 038852 255 GFLNLGNLEKANELFDELKQRCLVYD----GV---VNATF-MEWWFNQGKDKEAMQSYKSLMERN----FRMTPATCNTL 322 (851)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~~~~~~~~d----~~---~~~~l-i~~~~~~g~~~~A~~l~~~~~~~~----~~~~~~~~~~L 322 (851)
......++++|..++.++...-..++ .. .+..+ ..+....|+.++|+++.+..+..- .......+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 34456789999998887765422211 11 22222 233455789999999998887642 23345667778
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCC--hHHHHHHHHHhccCCCCC--CCccCHHHH
Q 038852 323 LEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGK--FSEAIETFKKAGTHPKSK--PFAMDVAGY 398 (851)
Q Consensus 323 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~--~~~A~~~~~~~~~~~~~~--~~~~d~~~~ 398 (851)
+.+..-.|++++|..+.....+....-+.......+...-...+...|. +.+.+..|.......... ....-..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 8888899999999999888766422221111111122222345666773 333333444332211000 000122334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc--chhHHH-
Q 038852 399 NNIIARYCENEMLEEAEKLLREISTKS----LSPDVT--TFRTLIDAYLKVERIDDALELFNRMVESGLRV--VVSFGT- 469 (851)
Q Consensus 399 ~~li~~~~~~g~~~~A~~l~~~m~~~g----~~pd~~--~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~- 469 (851)
..++.++.+ ++.+..-...-.+.| ..+-.. .+..|+.++...|++++|...++++....... .+.+..
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 444455444 333333222222211 111111 22467888889999999999999988753333 222211
Q ss_pred -HHH--HHHHHcCCHHHHHHHHHHH
Q 038852 470 -KVF--NELITKGKVAECAPILTKM 491 (851)
Q Consensus 470 -~L~--~~~~~~g~~~~A~~ll~~m 491 (851)
..+ ......|+.+++...+.+-
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHhc
Confidence 111 1223468888888777664
No 242
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.28 E-value=0.084 Score=61.55 Aligned_cols=147 Identities=11% Similarity=0.046 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH-----HcCChHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHHcC-
Q 038852 155 YDDAVALFKYFFDQADIVPNIVSYNNLINTYC-----DEGKVDEGMNVFRRIIET---APVGPSSNTYRHLTKGFVDAG- 225 (851)
Q Consensus 155 ~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~-----~~g~~~~A~~l~~~~~~~---~~~~p~~~~~~~Li~~~~~~g- 225 (851)
..+|.++|+.+.+.. ++..-..++.+|. ...|.+.|+.+|+.+.+. .-..-+......|..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhc----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCC
Confidence 456788887774432 3444444444333 446788888888888661 000002335666777777643
Q ss_pred ----CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHH----c
Q 038852 226 ----RIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL---GNLEKANELFDELKQRCLVYDGVVNATFMEWWFN----Q 294 (851)
Q Consensus 226 ----~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~---g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~----~ 294 (851)
+.+.|+.+|.+..+.|.. +...+ |+.+|... .|...|.++|..+.+.|.. ..+..+..+|.. .
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~-~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNP-DAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCc-hHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 567788888888777644 44333 33333322 3567788888877776643 222222222221 2
Q ss_pred CCHHHHHHHHHHHHHhc
Q 038852 295 GKDKEAMQSYKSLMERN 311 (851)
Q Consensus 295 g~~~~A~~l~~~~~~~~ 311 (851)
.+.+.|..+|+++.+++
T Consensus 378 r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG 394 (552)
T ss_pred CCHHHHHHHHHHHHHcc
Confidence 36677777777777766
No 243
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.27 E-value=0.57 Score=53.68 Aligned_cols=8 Identities=0% Similarity=0.277 Sum_probs=3.7
Q ss_pred HHHHHHHh
Q 038852 505 VVVRGLCN 512 (851)
Q Consensus 505 ~ll~a~~~ 512 (851)
.+|+.|..
T Consensus 458 ~liD~~vd 465 (1102)
T KOG1924|consen 458 ELIDKMVD 465 (1102)
T ss_pred HHHHHHHH
Confidence 34555543
No 244
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.27 E-value=0.0043 Score=68.27 Aligned_cols=121 Identities=12% Similarity=0.148 Sum_probs=73.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 038852 427 SPDVTTFRTLIDAYLKVERIDDALELFNRMVES--GLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYD 504 (851)
Q Consensus 427 ~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~ 504 (851)
..+...+..+++.+....+++.+..++.+.... .......+...+++.|.+.|..++++++++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 335555566666666666666666666666543 222222333456677777777777777777766677777777777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 038852 505 VVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGK 547 (851)
Q Consensus 505 ~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~ 547 (851)
.|++.+.+.|++..|.++...|+..+.-.++.++...+.++.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 7777777777777777777766655544444444443333333
No 245
>PRK11906 transcriptional regulator; Provisional
Probab=97.26 E-value=0.032 Score=61.10 Aligned_cols=151 Identities=13% Similarity=0.087 Sum_probs=96.8
Q ss_pred ChHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038852 190 KVDEGMNVFRRIIETAPVGP-SSNTYRHLTKGFVDA---------GRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL 259 (851)
Q Consensus 190 ~~~~A~~l~~~~~~~~~~~p-~~~~~~~Li~~~~~~---------g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~ 259 (851)
..+.|+.+|++++......| ....|..+..++... .+..+|.++-+++++.+.. |..+...++.+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhh
Confidence 35667777888773222222 345555555554432 3456777777778877666 777777777777777
Q ss_pred CCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHhCCCHHHHHHH
Q 038852 260 GNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATC-NTLLEVLLKHEKKEEAQAL 338 (851)
Q Consensus 260 g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~-~~Li~~~~~~g~~~~A~~l 338 (851)
++++.|..+|+++...+.. ...+|........-.|+.++|.+.+++.++.++.--.... ...+..|+. ...++|+++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~ 429 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKL 429 (458)
T ss_pred cchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHH
Confidence 7788888888888777665 5566666666677788888888888887776543222222 222334544 456777777
Q ss_pred HHHHH
Q 038852 339 FEQML 343 (851)
Q Consensus 339 ~~~m~ 343 (851)
|-+-.
T Consensus 430 ~~~~~ 434 (458)
T PRK11906 430 YYKET 434 (458)
T ss_pred Hhhcc
Confidence 76543
No 246
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.25 E-value=0.17 Score=65.07 Aligned_cols=328 Identities=15% Similarity=0.111 Sum_probs=175.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038852 144 AIIAAMYRAKRYDDAVALFKYFFDQADIVP--NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGF 221 (851)
Q Consensus 144 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~p--d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~ 221 (851)
.|..+-.+++.|.+|+-.++.- ......- ....|..+...|...++.|...-+...-.. .+ .....|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~~---sl~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----DP---SLYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----Cc---cHHHHHHHH
Confidence 4555667889999999988873 1111111 223445555589999999887777664211 11 334455567
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHH
Q 038852 222 VDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAM 301 (851)
Q Consensus 222 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~ 301 (851)
...|+++.|...|+.+...+.. ....++.++......|.++.++-..+-............++.-+.+-.+.++++...
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 7789999999999999987543 466777778777778888887776665544322222233333445557778888777
Q ss_pred HHHHHHHHhcCCCCHHHHHH--HHHHHHhCCCHH--HHHHHHHHHHHcCCCCC----CCccCHHHHHHHHHHHHHcCChH
Q 038852 302 QSYKSLMERNFRMTPATCNT--LLEVLLKHEKKE--EAQALFEQMLDNHQPPN----IQAVNSDTFNIMVNECFKHGKFS 373 (851)
Q Consensus 302 ~l~~~~~~~~~~~~~~~~~~--Li~~~~~~g~~~--~A~~l~~~m~~~~~~p~----~~~~~~~~~~~L~~~~~~~g~~~ 373 (851)
+... +.+. .+|.. ++..+.+..+-+ .-.++.+.+.+.-+.+- ....-...|..++....-. +.+
T Consensus 1539 ~~l~---~~n~----e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~ 1610 (2382)
T KOG0890|consen 1539 SYLS---DRNI----EYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELE 1610 (2382)
T ss_pred hhhh---cccc----cchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHH
Confidence 7665 2222 23332 233333322211 11122222222111110 0000112333333332222 122
Q ss_pred HHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HhC----CCCC-CHHHHHHHHHHHHHcCCHH
Q 038852 374 EAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREI-STK----SLSP-DVTTFRTLIDAYLKVERID 447 (851)
Q Consensus 374 ~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m-~~~----g~~p-d~~~~~~Ll~~~~~~g~~~ 447 (851)
.-.+.+.... .......+...|..-+..-....+..+-+-.+++. ... +... -..+|...++...+.|.++
T Consensus 1611 ~~~~~l~~~s---~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q 1687 (2382)
T KOG0890|consen 1611 NSIEELKKVS---YDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQ 1687 (2382)
T ss_pred HHHHHhhccC---ccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHH
Confidence 2222222221 22111123333433333222222222222222221 111 1221 2467888888889999999
Q ss_pred HHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 038852 448 DALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEK 494 (851)
Q Consensus 448 ~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~ 494 (851)
.|...+-++.+.+ . ...+...+..+...|+...|+.++++.++.
T Consensus 1688 ~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1688 RAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 9999888888776 2 233334667888999999999999998765
No 247
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.24 E-value=0.00054 Score=46.61 Aligned_cols=33 Identities=42% Similarity=0.812 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 038852 213 TYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGAD 245 (851)
Q Consensus 213 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd 245 (851)
+|+.++.+|++.|++++|+++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666655
No 248
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=97.24 E-value=0.21 Score=54.58 Aligned_cols=96 Identities=16% Similarity=0.187 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 174 d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
|.....+++..+..+-++.-...+..+|++.+ . +-..|..++.+|... ..+.-..+++++++..+. |++.-..|+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-E--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc-c--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 34455667777777777777777777777654 2 555777788888777 456667777777777665 555555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 038852 254 SGFLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~~~~ 275 (851)
..|.+ ++..++..+|.+++.+
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHH
Confidence 55554 7777777777776654
No 249
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.24 E-value=0.52 Score=54.00 Aligned_cols=15 Identities=13% Similarity=0.457 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHcCC
Q 038852 156 DDAVALFKYFFDQAD 170 (851)
Q Consensus 156 ~~A~~l~~~~~~~~~ 170 (851)
.+...+|+.|....+
T Consensus 86 ~e~~~~F~~~~~dmn 100 (1102)
T KOG1924|consen 86 NEVLELFELMGEDMN 100 (1102)
T ss_pred HHHHHHHHHHhhhcc
Confidence 455666777665443
No 250
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.21 E-value=0.028 Score=61.45 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 038852 136 RPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNI-VSYNNLINTYCDEGKVDEGMNVFRRIIET 204 (851)
Q Consensus 136 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~-~~~~~Li~~~~~~g~~~~A~~l~~~~~~~ 204 (851)
..+...|+.+..+|.+.|++++|+..|+++++......+. .+|+.++.+|...|++++|++.|+++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5567889999999999999999999999988754322222 46899999999999999999999999875
No 251
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.20 E-value=0.0055 Score=62.21 Aligned_cols=101 Identities=19% Similarity=0.187 Sum_probs=63.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIR--PTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN-IVSYNNLIN 183 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd-~~~~~~Li~ 183 (851)
+++.+..+++.|++..|...|...++..+. .....+.+|+.+++..|++++|..+|..+.+..+-.+. ...+.-|+.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 566666677777777777777766655432 12334555677777777777777777766665444333 255666666
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCC
Q 038852 184 TYCDEGKVDEGMNVFRRIIETAPV 207 (851)
Q Consensus 184 ~~~~~g~~~~A~~l~~~~~~~~~~ 207 (851)
+..+.|+.++|..+|+++++..|.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCC
Confidence 666777777777777777666544
No 252
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.20 E-value=0.013 Score=56.82 Aligned_cols=66 Identities=18% Similarity=0.160 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQL 242 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~ 242 (851)
..+||.|+-.+...|+++.|.+.|+...+.++. ...+....+-++.-.|++..|.+-|...-..+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~--y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~ 164 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT--YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDP 164 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCc--chHHHhccceeeeecCchHhhHHHHHHHHhcCC
Confidence 345777777777777888888888777776654 434444444445556777777776666655543
No 253
>PRK15331 chaperone protein SicA; Provisional
Probab=97.19 E-value=0.019 Score=54.08 Aligned_cols=95 Identities=17% Similarity=0.039 Sum_probs=78.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHH
Q 038852 214 YRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFN 293 (851)
Q Consensus 214 ~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~ 293 (851)
....+.-+...|++++|..+|+-+...++. |..-|..|+.+|-..+++++|+..|......+.. |.........+|..
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~ 117 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHH
Confidence 344556667889999999999988887766 7777888999999999999999999988776654 77777788888999
Q ss_pred cCCHHHHHHHHHHHHHh
Q 038852 294 QGKDKEAMQSYKSLMER 310 (851)
Q Consensus 294 ~g~~~~A~~l~~~~~~~ 310 (851)
.|+.+.|+..|+.+++.
T Consensus 118 l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 118 MRKAAKARQCFELVNER 134 (165)
T ss_pred hCCHHHHHHHHHHHHhC
Confidence 99999999988887773
No 254
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.19 E-value=0.05 Score=52.85 Aligned_cols=183 Identities=14% Similarity=0.061 Sum_probs=101.4
Q ss_pred CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038852 189 GKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANEL 268 (851)
Q Consensus 189 g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~ 268 (851)
|-++-|.--|...+...|. -..+||.|+-.+...|+++.|.+.|+...+.+.. ...+..+-+-++.-.|++.-|.+-
T Consensus 79 GL~~LAR~DftQaLai~P~--m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~LAq~d 155 (297)
T COG4785 79 GLRALARNDFSQALAIRPD--MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYKLAQDD 155 (297)
T ss_pred hHHHHHhhhhhhhhhcCCC--cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchHhhHHH
Confidence 4445555566666666655 3458899999999999999999999999998766 444444455556667899999887
Q ss_pred HHHHHhcCCc-cchhhHHHHHHHHHHcCCHHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 038852 269 FDELKQRCLV-YDGVVNATFMEWWFNQGKDKEAMQSY-KSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNH 346 (851)
Q Consensus 269 ~~~~~~~~~~-~d~~~~~~li~~~~~~g~~~~A~~l~-~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~ 346 (851)
|...-..+.. |-...|..+. ...-+..+|..-+ ++.... |..-|...|..|.- |++. ...+|+++....
T Consensus 156 ~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a 226 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKIS-EETLMERLKADA 226 (297)
T ss_pred HHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhc
Confidence 7776665443 1122222222 2233444554333 333322 22344433333321 2211 122333333211
Q ss_pred CCC-CCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 038852 347 QPP-NIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAG 383 (851)
Q Consensus 347 ~~p-~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~ 383 (851)
..- .....-.++|..|++.|...|+.++|..+|+-+.
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 100 0000023567777777777777777777777664
No 255
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.18 E-value=0.051 Score=58.68 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 038852 429 DVTTFRTLIDAYLKVERIDDALELFNRMVESG 460 (851)
Q Consensus 429 d~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~ 460 (851)
|-..+.+++.++.-.|++++|...+++|.+..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 44455667777777788888888888777654
No 256
>PRK11906 transcriptional regulator; Provisional
Probab=97.18 E-value=0.016 Score=63.32 Aligned_cols=149 Identities=17% Similarity=0.090 Sum_probs=104.7
Q ss_pred HHHHHHHHHHH---hcCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcC
Q 038852 228 GEAVDLLRDML---SRQLGADSLVYNNLISGFLN---------LGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQG 295 (851)
Q Consensus 228 ~~A~~l~~~m~---~~g~~pd~~~~~~Li~~~~~---------~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g 295 (851)
+.|+.+|.+++ +.+.. ....|..+..++.. ..+..+|.++.+++++.+.. |......++.++.-.+
T Consensus 275 ~~Al~lf~ra~~~~~ldp~-~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTL-KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHhhcccCCcc-cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhc
Confidence 56778888888 44322 34555555544432 23466788888888888776 8888888888888888
Q ss_pred CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHH
Q 038852 296 KDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEA 375 (851)
Q Consensus 296 ~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A 375 (851)
+++.|..+|+.+...++. ...+|......+...|+.++|.+.++++++.... .. ...+....+..|+..+ +++|
T Consensus 353 ~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~--~~--~~~~~~~~~~~~~~~~-~~~~ 426 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPR--RR--KAVVIKECVDMYVPNP-LKNN 426 (458)
T ss_pred chhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch--hh--HHHHHHHHHHHHcCCc-hhhh
Confidence 899999999999988753 3456666777778889999999999998874332 21 3445555555776655 6777
Q ss_pred HHHHHHhcc
Q 038852 376 IETFKKAGT 384 (851)
Q Consensus 376 ~~~~~~~~~ 384 (851)
+++|-+-.+
T Consensus 427 ~~~~~~~~~ 435 (458)
T PRK11906 427 IKLYYKETE 435 (458)
T ss_pred HHHHhhccc
Confidence 777666543
No 257
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.18 E-value=0.061 Score=58.90 Aligned_cols=146 Identities=14% Similarity=0.170 Sum_probs=88.0
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHcCC--C-----------
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTV-FTCNAIIAAMYRAKRYDDAVALFKYFFDQAD--I----------- 171 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~--~----------- 171 (851)
.-..++...-+..+...-+++.++++.. .+|- ..|..|. --......+|+++|++.++... +
T Consensus 170 ~Aq~IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~ 245 (539)
T PF04184_consen 170 PAQEIMQKAWRERNPQARIKAAKEALEI--NPDCADAYILLA--EEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGH 245 (539)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhcc--cccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccc
Confidence 3446777788888888888888888844 3433 2332222 2235667888888888765210 0
Q ss_pred ------CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 038852 172 ------VPN----IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQ 241 (851)
Q Consensus 172 ------~pd----~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g 241 (851)
..| ..+-..|..++.+.|+.++|++.|+++++..+..-+..+...|+.++...+.+.++..++.+..+..
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 011 1222345566667778888888888777665443344566777777777888887777777764432
Q ss_pred CC-CCHHHHHHHHHH
Q 038852 242 LG-ADSLVYNNLISG 255 (851)
Q Consensus 242 ~~-pd~~~~~~Li~~ 255 (851)
.. --..+|+..+-.
T Consensus 326 lpkSAti~YTaALLk 340 (539)
T PF04184_consen 326 LPKSATICYTAALLK 340 (539)
T ss_pred CCchHHHHHHHHHHH
Confidence 21 122445554433
No 258
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.17 E-value=0.00058 Score=46.26 Aligned_cols=32 Identities=19% Similarity=0.380 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038852 397 GYNNIIARYCENEMLEEAEKLLREISTKSLSP 428 (851)
Q Consensus 397 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 428 (851)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 46666666666666666666666666655544
No 259
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.15 E-value=0.022 Score=62.26 Aligned_cols=68 Identities=13% Similarity=-0.013 Sum_probs=56.6
Q ss_pred cCCCccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038852 101 VGPRLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTV--FTCNAIIAAMYRAKRYDDAVALFKYFFDQ 168 (851)
Q Consensus 101 ~~~~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~~~~~ 168 (851)
......+.++..+|...|++++|+..|++++........ .+|+.+..+|...|++++|++.|+++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344467889999999999999999999999976533221 46899999999999999999999999774
No 260
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=97.14 E-value=0.55 Score=50.97 Aligned_cols=125 Identities=12% Similarity=0.086 Sum_probs=85.9
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 038852 149 MYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIG 228 (851)
Q Consensus 149 ~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~ 228 (851)
....|++..|-+-+..+++...-.|+.+...+. ++...|+++.+...+..+.+.-+. ...+..++++...+.|+++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~~~s--~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKIIGT--TDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhhhcC--CchHHHHHHHhhhchhhHH
Confidence 345677777666555555655555665544443 357788888888887766544322 5557788888888888888
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc
Q 038852 229 EAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLV 278 (851)
Q Consensus 229 ~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~ 278 (851)
+|..+-+.|+...++ |..+...........|-++++...++++...+..
T Consensus 375 ~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 375 EALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 888888888877776 6666555555556677888888888887765443
No 261
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0075 Score=64.24 Aligned_cols=142 Identities=14% Similarity=0.078 Sum_probs=65.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038852 179 NNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLN 258 (851)
Q Consensus 179 ~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~ 258 (851)
..-.+.|.+.|+|..|...|++++..-.. .+.-+.++...... .-..++.+|+-+|.+
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~--------------~~~~~~ee~~~~~~--------~k~~~~lNlA~c~lK 269 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEY--------------RRSFDEEEQKKAEA--------LKLACHLNLAACYLK 269 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhc--------------cccCCHHHHHHHHH--------HHHHHhhHHHHHHHh
Confidence 34455677888888888888876543110 00000011100000 011234445555555
Q ss_pred cCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHH-HHH
Q 038852 259 LGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEE-AQA 337 (851)
Q Consensus 259 ~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~-A~~ 337 (851)
.+++.+|++..++++..+.. |......-..+|...|+++.|+..|+++++..+. |..+-+.|+.+-.+..++.+ ..+
T Consensus 270 l~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk 347 (397)
T KOG0543|consen 270 LKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKK 347 (397)
T ss_pred hhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555554433 4444444455555555555555555555554432 22333334444333333332 355
Q ss_pred HHHHHHH
Q 038852 338 LFEQMLD 344 (851)
Q Consensus 338 l~~~m~~ 344 (851)
+|..|..
T Consensus 348 ~y~~mF~ 354 (397)
T KOG0543|consen 348 MYANMFA 354 (397)
T ss_pred HHHHHhh
Confidence 5555554
No 262
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.12 E-value=0.0016 Score=52.31 Aligned_cols=55 Identities=25% Similarity=0.387 Sum_probs=39.6
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038852 222 VDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCL 277 (851)
Q Consensus 222 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~ 277 (851)
...|++++|+++|++++..... +..++..++.+|.+.|++++|.++++++.....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4567777788888777777655 677777777777777777777777777776543
No 263
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.12 E-value=0.00074 Score=45.73 Aligned_cols=31 Identities=26% Similarity=0.418 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 038852 213 TYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG 243 (851)
Q Consensus 213 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~ 243 (851)
+|+.++.+|.+.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 4555555555555555555555555555443
No 264
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.18 Score=57.94 Aligned_cols=76 Identities=16% Similarity=0.185 Sum_probs=41.3
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 038852 184 TYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLE 263 (851)
Q Consensus 184 ~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~ 263 (851)
-+.+.+.+++|+++.+.....-+..--...+..+|..+...|++++|-.+.-+|... +...|...+..+...+...
T Consensus 365 Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccc
Confidence 345566666666665544322111012345566666666677777776666666654 4555555555555555443
No 265
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.07 E-value=0.019 Score=54.15 Aligned_cols=70 Identities=17% Similarity=0.360 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCCHHH
Q 038852 177 SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLS-----RQLGADSLV 248 (851)
Q Consensus 177 ~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~~ 248 (851)
++..++..+...|++++|+.++++++..+|. |...|..+|.+|...|+..+|+++|+++.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~--~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY--DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3455666667777777777777777777766 777777777777777777777777776643 455555543
No 266
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.06 E-value=0.53 Score=51.31 Aligned_cols=296 Identities=12% Similarity=0.060 Sum_probs=162.0
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH--HHHHHHHH---c-----CC--CC
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAV--ALFKYFFD---Q-----AD--IV 172 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~--~l~~~~~~---~-----~~--~~ 172 (851)
..+......-...+.++...+++..+...+.....+.+|.-+..|++.|....-. +-++.+.. . .| ..
T Consensus 18 ~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~ 97 (696)
T KOG2471|consen 18 YSLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLK 97 (696)
T ss_pred HHHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhh
Confidence 3444555566677899999999998887776666667888888888887654321 12221110 0 01 11
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHHcCCHHHHHHHH---HHHHhcC---CC
Q 038852 173 PNIVSYNNLINTYCDEGKVDEGMNVFRRIIETA-PVGPS--SNTYRHLTKGFVDAGRIGEAVDLL---RDMLSRQ---LG 243 (851)
Q Consensus 173 pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~-~~~p~--~~~~~~Li~~~~~~g~~~~A~~l~---~~m~~~g---~~ 243 (851)
-+.+.+...+.+|.....+.+|+++......+- +..-. ..........++.....++|+.++ .+|+..+ ..
T Consensus 98 ~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~ 177 (696)
T KOG2471|consen 98 QGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLV 177 (696)
T ss_pred cchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 123344445555666666667776665554321 00000 001112233444555566666544 3443321 00
Q ss_pred CCHHH--------------------------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchh-hHHHHHHHHHHcCC
Q 038852 244 ADSLV--------------------------YNNLISGFLNLGNLEKANELFDELKQRCLVYDGV-VNATFMEWWFNQGK 296 (851)
Q Consensus 244 pd~~~--------------------------~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~-~~~~li~~~~~~g~ 296 (851)
-+..+ ...-+++|....++..+.+-.+.+... .-|.. ....-...++-.|+
T Consensus 178 gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~--a~~s~~~l~LKsq~eY~~gn 255 (696)
T KOG2471|consen 178 GNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNI--AQDSSMALLLKSQLEYAHGN 255 (696)
T ss_pred ccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhh--cCCCcHHHHHHHHHHHHhcc
Confidence 00011 111223333333333333333322211 11221 22222345677899
Q ss_pred HHHHHHHHHHHHH---hcCCC-----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-------cCCCCCCC-----ccCH
Q 038852 297 DKEAMQSYKSLME---RNFRM-----TPATCNTLLEVLLKHEKKEEAQALFEQMLD-------NHQPPNIQ-----AVNS 356 (851)
Q Consensus 297 ~~~A~~l~~~~~~---~~~~~-----~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~-------~~~~p~~~-----~~~~ 356 (851)
+.+|.+++...-- .|... .-..||.|+-++.+.|.+..+..+|.+++. .|+++... ....
T Consensus 256 ~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~ 335 (696)
T KOG2471|consen 256 HPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSM 335 (696)
T ss_pred hHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccch
Confidence 9999988865421 22111 123468888888888998888888888874 44443211 1134
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHh
Q 038852 357 DTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCE 407 (851)
Q Consensus 357 ~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~ 407 (851)
.+....+..|...|+.-.|.++|.++...... +...|..|.++|..
T Consensus 336 eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~-----nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 336 EILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR-----NPRLWLRLAECCIM 381 (696)
T ss_pred hhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc-----CcHHHHHHHHHHHH
Confidence 45566788889999999999999988655443 77889988888864
No 267
>PRK11619 lytic murein transglycosylase; Provisional
Probab=97.05 E-value=1.1 Score=52.91 Aligned_cols=407 Identities=8% Similarity=-0.026 Sum_probs=204.9
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCH-HHHHHHHHH
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNI-VSYNNLINT 184 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~-~~~~~Li~~ 184 (851)
..+..+...++.|++..+..+...+. ...-.....|..|...+ ....+++...++++. .-.|-. ..-...+..
T Consensus 35 ~~f~~A~~a~~~g~~~~~~~~~~~l~-d~pL~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~----~~~P~~~~Lr~~~l~~ 108 (644)
T PRK11619 35 QRYQQIKQAWDNRQMDVVEQLMPTLK-DYPLYPYLEYRQLTQDL-MNQPAVQVTNFIRAN----PTLPPARSLQSRFVNE 108 (644)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcc-CCCcHhHHHHHHHHhcc-ccCCHHHHHHHHHHC----CCCchHHHHHHHHHHH
Confidence 45677888899999999888777653 11111222333332211 123455555555432 222222 222334445
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 038852 185 YCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEK 264 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~ 264 (851)
+.+.+++.+.+.++.. .+. +......++.++...|+.++|.+..+++-..|.. ....+..++..+.+.|.+..
T Consensus 109 La~~~~w~~~~~~~~~----~p~--~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~ 181 (644)
T PRK11619 109 LARREDWRGLLAFSPE----KPK--PVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDP 181 (644)
T ss_pred HHHccCHHHHHHhcCC----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCH
Confidence 5667787776663321 122 5556677788888899988888877777666544 45566777777776665433
Q ss_pred HH--HHHHHHHhcCCccchhhHHHHHHHHH------------HcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--Hh
Q 038852 265 AN--ELFDELKQRCLVYDGVVNATFMEWWF------------NQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVL--LK 328 (851)
Q Consensus 265 A~--~~~~~~~~~~~~~d~~~~~~li~~~~------------~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~--~~ 328 (851)
.. +-++.+...+ +......++..+. -..+...+..++.. +.++...-..++.++ ..
T Consensus 182 ~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rla 253 (644)
T PRK11619 182 LAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFASVA 253 (644)
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHH
Confidence 22 1122222222 1111122221110 00111111111111 111211111111122 23
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhc
Q 038852 329 HEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCEN 408 (851)
Q Consensus 329 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~ 408 (851)
..+.+.|..++..+.....-... ....++..++......+..++|...++....... |...+...+..-.+.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~--~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~------~~~~~e~r~r~Al~~ 325 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNED--QRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ------STSLLERRVRMALGT 325 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHH--HHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC------CcHHHHHHHHHHHHc
Confidence 45668888888877543321100 0123344444444444336788888887643322 333344455555688
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHH-----
Q 038852 409 EMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAE----- 483 (851)
Q Consensus 409 g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~----- 483 (851)
++++.+...+..|... ..-...-..-++.++...|+.++|..+|+++... ..+|..|.. .+.|..-.
T Consensus 326 ~dw~~~~~~i~~L~~~-~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~-----~~fYG~LAa--~~Lg~~~~~~~~~ 397 (644)
T PRK11619 326 GDRRGLNTWLARLPME-AKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ-----RGFYPMVAA--QRLGEEYPLKIDK 397 (644)
T ss_pred cCHHHHHHHHHhcCHh-hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CCcHHHHHH--HHcCCCCCCCCCC
Confidence 9999998888887553 2224455566788888899999999999997542 123332221 11221100
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 484 CAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLN 559 (851)
Q Consensus 484 A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~ 559 (851)
.......+ .-+ --...+..+...|+..+|...+..+.+. .+......++....+.|..+.++....
T Consensus 398 ~~~~~~~~-----~~~--~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 398 APKPDSAL-----TQG--PEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred CCchhhhh-----ccC--hHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 00000000 000 1112334455667777777777666653 344455556666666666666655443
No 268
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=1.3 Score=53.34 Aligned_cols=89 Identities=8% Similarity=0.070 Sum_probs=47.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 038852 434 RTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNE 513 (851)
Q Consensus 434 ~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~ 513 (851)
...+.+|...|.+++...+|-+..+.+ .....|..++....+.. +.+..+..+... ..-....|..++..+...
T Consensus 605 ~~a~lcYi~agsv~k~v~~w~~~~~~~--~~~~~y~~~~e~l~~~~---~~l~~~~~~~~~-s~~l~~~~~~yanllasQ 678 (1049)
T KOG0307|consen 605 SAAILCYICAGSVDKLVEIWLKALDLE--LAPTSYQDLAEDLMELT---LKLAQFSANKTY-SAGLAKKFSEYANLLASQ 678 (1049)
T ss_pred hhhhHHhhhccChhhhHHHHHHhcccc--cchHHHHHHHHHHHHHH---hhhhhcccCccc-cHHHHHHHHHHHHHHHhc
Confidence 445668888999999999998887765 23333333332222111 111111111110 000223344555666678
Q ss_pred CChHHHHHHHHHHHH
Q 038852 514 GLFDMSKDIVDQMMK 528 (851)
Q Consensus 514 g~~~~A~~~~~~m~~ 528 (851)
|.++.|+.++..+..
T Consensus 679 G~~~~A~~~l~~~~s 693 (1049)
T KOG0307|consen 679 GALAAAMSFLPLLPS 693 (1049)
T ss_pred ChHHHHHhhcCcCcc
Confidence 888888888776543
No 269
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.39 Score=54.86 Aligned_cols=52 Identities=13% Similarity=0.135 Sum_probs=27.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCccchh---HHHHHHHHHHHcCCHHHHHHHHHHH
Q 038852 438 DAYLKVERIDDALELFNRMVESGLRVVVS---FGTKVFNELITKGKVAECAPILTKM 491 (851)
Q Consensus 438 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~L~~~~~~~g~~~~A~~ll~~m 491 (851)
-++...|+-++|..+.++|.... .|... .| .++.+|+..|+.....+++.-.
T Consensus 509 iaL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~-t~alAy~GTgnnkair~lLh~a 563 (929)
T KOG2062|consen 509 IALVVYGRQEDADPLIKELLRDK-DPILRYGGMY-TLALAYVGTGNNKAIRRLLHVA 563 (929)
T ss_pred HHHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHH-HHHHHHhccCchhhHHHhhccc
Confidence 34455566667777777776543 22111 22 2445566666655555555443
No 270
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.04 E-value=0.0039 Score=50.82 Aligned_cols=56 Identities=21% Similarity=0.376 Sum_probs=30.2
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 038852 184 TYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQ 241 (851)
Q Consensus 184 ~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g 241 (851)
+|.+.+++++|+++++++++.+|. +...|..++.++.+.|++++|.+.|+++++.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD--DPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc--cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 445555555555555555555444 44455555555555555555555555555543
No 271
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=1.2 Score=52.46 Aligned_cols=169 Identities=14% Similarity=0.217 Sum_probs=80.3
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 038852 148 AMYRAKRYDDAVALFKYFFDQADIVPNI--VSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAG 225 (851)
Q Consensus 148 ~~~~~g~~~~A~~l~~~~~~~~~~~pd~--~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g 225 (851)
.|...|+|++|+++-+.- |+. .++..-++.|...++|..|.++|.++.+ .|..++--+....
T Consensus 367 ~yLd~g~y~kAL~~ar~~-------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~---------~FEEVaLKFl~~~ 430 (911)
T KOG2034|consen 367 TYLDKGEFDKALEIARTR-------PDALETVLLKQADFLFQDKEYLRAAEIYAETLS---------SFEEVALKFLEIN 430 (911)
T ss_pred HHHhcchHHHHHHhccCC-------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh---------hHHHHHHHHHhcC
Confidence 455678888887765422 332 1344445566777788888888777633 3444444444555
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHH-----HHHHHHH-hcCCHH----HHHHHHHHHH--------h-cCCccchhhHHH
Q 038852 226 RIGEAVDLLRDMLSRQLGADSLVYN-----NLISGFL-NLGNLE----KANELFDELK--------Q-RCLVYDGVVNAT 286 (851)
Q Consensus 226 ~~~~A~~l~~~m~~~g~~pd~~~~~-----~Li~~~~-~~g~~~----~A~~~~~~~~--------~-~~~~~d~~~~~~ 286 (851)
+.+.-..++.+=+++ +.++..+-. -|+..|. +.++++ ++++-++.-. + .....+...+.+
T Consensus 431 ~~~~L~~~L~KKL~~-lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nret 509 (911)
T KOG2034|consen 431 QERALRTFLDKKLDR-LTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRET 509 (911)
T ss_pred CHHHHHHHHHHHHhh-CChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHH
Confidence 555333333333322 222222111 1333332 222222 2222221111 0 011112223333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 038852 287 FMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQM 342 (851)
Q Consensus 287 li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m 342 (851)
....+...|+.++...+-.-+. .|..++..++..+.+++|++++..-
T Consensus 510 v~~l~~~~~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 510 VYQLLASHGRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHHccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444555666666554444332 3445666677777777777776544
No 272
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.97 E-value=0.03 Score=49.79 Aligned_cols=93 Identities=19% Similarity=0.210 Sum_probs=63.9
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcC
Q 038852 184 TYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADS---LVYNNLISGFLNLG 260 (851)
Q Consensus 184 ~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~---~~~~~Li~~~~~~g 260 (851)
++...|+++.|++.|.+.+...|. +..+||.-..++.-.|+.++|++-++++++..-.-.. ..|.--+..|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~--raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE--RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc--chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 456677788888888777776655 5557777777777788888888777777764322121 34555566777778
Q ss_pred CHHHHHHHHHHHHhcCCc
Q 038852 261 NLEKANELFDELKQRCLV 278 (851)
Q Consensus 261 ~~~~A~~~~~~~~~~~~~ 278 (851)
+.+.|+.-|+...+.|..
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 888888777777666543
No 273
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.95 E-value=0.0031 Score=51.45 Aligned_cols=60 Identities=12% Similarity=0.241 Sum_probs=46.2
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 038852 146 IAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPV 207 (851)
Q Consensus 146 i~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~ 207 (851)
..+|.+.+++++|++++++++...+ .+...|...+.++...|++++|++.|+++++.++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDP--DDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCc--ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 3467788888888888888877543 35667777888888888888888888888887665
No 274
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.92 E-value=0.014 Score=59.37 Aligned_cols=100 Identities=20% Similarity=0.366 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH-HHHHHHH
Q 038852 141 TCNAIIAAMYRAKRYDDAVALFKYFFDQADIVP-NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSS-NTYRHLT 218 (851)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~p-d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~-~~~~~Li 218 (851)
.|+.-+. +++.|+|.+|...|...++..+... ....+.-|+.++...|++++|..+|..+.+..|..+.. +++..|+
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3444443 3455666666666666655432110 12234446666666666666666666666655544433 5566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcC
Q 038852 219 KGFVDAGRIGEAVDLLRDMLSRQ 241 (851)
Q Consensus 219 ~~~~~~g~~~~A~~l~~~m~~~g 241 (851)
.+..+.|+.++|..+|+++++.-
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHC
Confidence 66666666666666666666553
No 275
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.92 E-value=0.045 Score=51.59 Aligned_cols=106 Identities=20% Similarity=0.324 Sum_probs=67.3
Q ss_pred HHcCChhHHHHHHHHHHHcCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 038852 150 YRAKRYDDAVALFKYFFDQAD--IVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRI 227 (851)
Q Consensus 150 ~~~g~~~~A~~l~~~~~~~~~--~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~ 227 (851)
...++.+.++..+++++.... +-++... ..-+......++.+. ..+...++..+...|++
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~--------~~~~~~l~~~~~~~~~~ 78 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY--------LDALERLAEALLEAGDY 78 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH--------HHHHHHHHHHHHHTT-H
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH--------HHHHHHHHHHHHhccCH
Confidence 456777888888877765321 1111100 111222333333332 12566778888889999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038852 228 GEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQ 274 (851)
Q Consensus 228 ~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~ 274 (851)
++|+.++++++...+- |...|..+|.+|...|+...|+++|+++.+
T Consensus 79 ~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 79 EEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999888665 888899999999999999999998887754
No 276
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.90 E-value=0.0035 Score=51.96 Aligned_cols=62 Identities=21% Similarity=0.386 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHc---CCC-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 038852 141 TCNAIIAAMYRAKRYDDAVALFKYFFDQ---ADI-VPN-IVSYNNLINTYCDEGKVDEGMNVFRRII 202 (851)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~l~~~~~~~---~~~-~pd-~~~~~~Li~~~~~~g~~~~A~~l~~~~~ 202 (851)
+++.+..+|...|++++|++.|+++++. .+. .++ +.+++.++.+|...|++++|+++|++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555556666666666666666655432 110 011 2344455555555555555555555544
No 277
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.88 E-value=0.0029 Score=52.43 Aligned_cols=64 Identities=25% Similarity=0.487 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhC---C-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 038852 176 VSYNNLINTYCDEGKVDEGMNVFRRIIETA---P-VGPS-SNTYRHLTKGFVDAGRIGEAVDLLRDMLS 239 (851)
Q Consensus 176 ~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~---~-~~p~-~~~~~~Li~~~~~~g~~~~A~~l~~~m~~ 239 (851)
.+|+.++.+|...|++++|++.|+++++.. + ..++ ..+++.++.+|...|++++|+++|+++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356667777777777777777777766431 1 1111 34455566666666666666666665543
No 278
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.46 Score=47.04 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=15.2
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCC
Q 038852 326 LLKHEKKEEAQALFEQMLDNHQP 348 (851)
Q Consensus 326 ~~~~g~~~~A~~l~~~m~~~~~~ 348 (851)
-...+++.+|+++|+++......
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34556777888888877665443
No 279
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=96.86 E-value=0.0013 Score=43.40 Aligned_cols=29 Identities=31% Similarity=0.658 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038852 397 GYNNIIARYCENEMLEEAEKLLREISTKS 425 (851)
Q Consensus 397 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g 425 (851)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555543
No 280
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=96.86 E-value=0.67 Score=50.88 Aligned_cols=170 Identities=16% Similarity=0.156 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 038852 245 DSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLE 324 (851)
Q Consensus 245 d~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~ 324 (851)
|.....+++..+...-.+.-.+.+..+|+..+- +...+..++.+|... .-+.-..+++++.+.++.. ++.-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnD-vv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFND-VVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchh-HHHHHHHHH
Confidence 555566667777666666666677777766543 445566666666666 4455556666666655422 122222333
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHH
Q 038852 325 VLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIAR 404 (851)
Q Consensus 325 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~ 404 (851)
.|.+ ++..++..+|.+++..-+.-.-...-.++|..|... -..+.|..+.+..++....+.. .-.+.+..+-.-
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~---~~~Vl~qdv~~~ 214 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEG---RGSVLMQDVYKK 214 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccc---hHHHHHHHHHHH
Confidence 3333 666666666666665432211000011123322221 1344555555555554332221 133444444455
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 038852 405 YCENEMLEEAEKLLREISTK 424 (851)
Q Consensus 405 ~~~~g~~~~A~~l~~~m~~~ 424 (851)
|....++++|++++..+++.
T Consensus 215 Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 215 YSENENWTEAIRILKHILEH 234 (711)
T ss_pred hccccCHHHHHHHHHHHhhh
Confidence 55566666666666666554
No 281
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.84 E-value=1 Score=49.03 Aligned_cols=131 Identities=9% Similarity=0.044 Sum_probs=91.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSR-IRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTY 185 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~ 185 (851)
...-|......||+..|.+-+..+++.. -.|+.....+. .....|+|+.+...+..+-.. +.....+...+++..
T Consensus 292 ~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~ 367 (831)
T PRK15180 292 ITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSL 367 (831)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhh
Confidence 3445677778899998887666666543 23444444333 456789999999998776332 223456778899999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG 243 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~ 243 (851)
.+.|++++|..+.+-|+...-. +.++....+......|-++++...++++...+..
T Consensus 368 ~~l~r~~~a~s~a~~~l~~eie--~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 368 HGLARWREALSTAEMMLSNEIE--DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred hchhhHHHHHHHHHHHhccccC--ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 9999999999999988765423 4445555555556678899999999988776433
No 282
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.83 E-value=0.017 Score=50.32 Aligned_cols=31 Identities=23% Similarity=0.440 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 038852 298 KEAMQSYKSLMERNFRMTPATCNTLLEVLLK 328 (851)
Q Consensus 298 ~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~ 328 (851)
-+.+.+|..|+..+++|+..+|+.++..+.+
T Consensus 86 ~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 86 TNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 3455667777777777777777777766543
No 283
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.07 Score=54.77 Aligned_cols=57 Identities=26% Similarity=0.330 Sum_probs=37.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038852 217 LTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQ 274 (851)
Q Consensus 217 Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~ 274 (851)
-.......|++.+|..+|+.+.....+ +......|+.+|...|+.+.|..++..+-.
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 344556677777777777777766544 445556677777777777777777766543
No 284
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.78 E-value=0.046 Score=50.29 Aligned_cols=67 Identities=15% Similarity=0.267 Sum_probs=42.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH
Q 038852 145 IIAAMYRAKRYDDAVALFKYFFDQADIVPN-IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSS 211 (851)
Q Consensus 145 li~~~~~~g~~~~A~~l~~~~~~~~~~~pd-~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~ 211 (851)
-.....+.|+|++|++.|+.+..+....+- ..+-..|+.+|.+.+++++|+..+++.++.+|..+++
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 333445667777777777777555443322 2345567777777777777777777777777766654
No 285
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.73 E-value=0.039 Score=50.77 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=59.9
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIR--PTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNI 175 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~ 175 (851)
..+.......++.|++++|++.|+.+...-.. -...+-..|+.+|.+.+++++|+..++++++..+..+++
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 56788899999999999999999998765432 234567789999999999999999999999988777764
No 286
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.72 E-value=1 Score=58.31 Aligned_cols=326 Identities=10% Similarity=0.052 Sum_probs=179.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 038852 109 NRVQSLIRAGDLDAASYLARQAVFSRIR--PTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYC 186 (851)
Q Consensus 109 ~ll~~l~~~g~~~~A~~l~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~ 186 (851)
.+..+-.+.+.+.+|...++.-.....+ .....+..+...|+..+++|....+...-.. .++ ....|....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~~s---l~~qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----DPS---LYQQILEHE 1460 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----Ccc---HHHHHHHHH
Confidence 4555677888999999988884211111 1233445555589999999988888763211 122 334455577
Q ss_pred HcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHH-HHHHHhcCCHHHH
Q 038852 187 DEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNL-ISGFLNLGNLEKA 265 (851)
Q Consensus 187 ~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~L-i~~~~~~g~~~~A 265 (851)
..|+++.|...|+.++..++. ....++.++......|.++.++...+-......+ ....|+++ +.+-.+.++++..
T Consensus 1461 ~~g~~~da~~Cye~~~q~~p~--~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se-~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKDPD--KEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSE-EVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred hhccHHHHHHHHHHhhcCCCc--cccchhhHHHhhhcccchhHHHhhhcchhhccCH-HHHHHHHHHHHHHhhhcchhhh
Confidence 889999999999999988765 5667888888888888888888877665554222 33334333 4455788888888
Q ss_pred HHHHHHHHhcCCccchhhHHH--HHHHHHHcC--CHHHHHHHHHHHHHhcC--------C-CCHHHHHHHHHHHHhCCCH
Q 038852 266 NELFDELKQRCLVYDGVVNAT--FMEWWFNQG--KDKEAMQSYKSLMERNF--------R-MTPATCNTLLEVLLKHEKK 332 (851)
Q Consensus 266 ~~~~~~~~~~~~~~d~~~~~~--li~~~~~~g--~~~~A~~l~~~~~~~~~--------~-~~~~~~~~Li~~~~~~g~~ 332 (851)
...+. ..+. ..|.. ++....+.. |.-.-.++++.+.+.-+ . --...|..++........
T Consensus 1538 e~~l~---~~n~----e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el- 1609 (2382)
T KOG0890|consen 1538 ESYLS---DRNI----EYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL- 1609 (2382)
T ss_pred hhhhh---cccc----cchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH-
Confidence 77765 2211 12221 223222222 21111122222222111 0 001233333333322111
Q ss_pred HHHHHHHHHHHHcCCCCCCC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHhc-cCCCC-CCCccCHHHHHHHHHHHHhcC
Q 038852 333 EEAQALFEQMLDNHQPPNIQ-AVNSDTFNIMVNECFKHGKFSEAIETFKKAG-THPKS-KPFAMDVAGYNNIIARYCENE 409 (851)
Q Consensus 333 ~~A~~l~~~m~~~~~~p~~~-~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~-~~~~~-~~~~~d~~~~~~li~~~~~~g 409 (851)
+ ...+... +..++.. ..+...|...+..-....+..+-+--+++.. ..... .--..-..+|..+++....+|
T Consensus 1610 ~---~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG 1684 (2382)
T KOG0890|consen 1610 E---NSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAG 1684 (2382)
T ss_pred H---HHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcc
Confidence 1 1111111 1122111 1122333333332222222333322233221 11001 001114678989999888899
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 038852 410 MLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESG 460 (851)
Q Consensus 410 ~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~ 460 (851)
.++.|...+-++.+.+ -...+...+......|+...|+.++++.++..
T Consensus 1685 ~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1685 HLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred cHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 9999998877776653 33456667778889999999999999998654
No 287
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.16 Score=52.24 Aligned_cols=127 Identities=13% Similarity=0.156 Sum_probs=78.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038852 180 NLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL 259 (851)
Q Consensus 180 ~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~ 259 (851)
.-.......|++.+|..+|+.++...+. +......|+++|...|+++.|..++..+-...-.........-|..+.+.
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~--~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa 216 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAAPE--NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA 216 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhCcc--cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence 3344567889999999999999988766 56678889999999999999999998876542221222222234444444
Q ss_pred CCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 038852 260 GNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMER 310 (851)
Q Consensus 260 g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~ 310 (851)
.+..+...+-.++-. +.. |......+...|...|+.++|++.+-.++++
T Consensus 217 a~~~~~~~l~~~~aa-dPd-d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 217 AATPEIQDLQRRLAA-DPD-DVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred hcCCCHHHHHHHHHh-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444333333333222 222 4555555555566666666666555555544
No 288
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=96.71 E-value=0.002 Score=42.48 Aligned_cols=28 Identities=32% Similarity=0.684 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 038852 213 TYRHLTKGFVDAGRIGEAVDLLRDMLSR 240 (851)
Q Consensus 213 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 240 (851)
+|+.|+.+|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
No 289
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.69 E-value=0.17 Score=45.29 Aligned_cols=144 Identities=17% Similarity=0.194 Sum_probs=83.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC
Q 038852 111 VQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGK 190 (851)
Q Consensus 111 l~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~ 190 (851)
+..++-.|..++..++..+.+.+. +..-+|++|--....-+-+-..++++.+-+.. |. ..+|+
T Consensus 9 AK~~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiF----Di----------s~C~N 71 (161)
T PF09205_consen 9 AKERILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIF----DI----------SKCGN 71 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-----G----------GG-S-
T ss_pred HHHHHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhc----Cc----------hhhcc
Confidence 445667788888888888877654 56667777766666666666666666552221 11 23344
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 191 VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFD 270 (851)
Q Consensus 191 ~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~ 270 (851)
+...+..+-.+- . +.......+..+...|+-+.-.+++.++.+. -.++......++.+|.+.|+..++.+++.
T Consensus 72 lKrVi~C~~~~n----~--~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~ 144 (161)
T PF09205_consen 72 LKRVIECYAKRN----K--LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLK 144 (161)
T ss_dssp THHHHHHHHHTT---------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHhc----c--hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 444444443221 1 3334455566677778888878888777653 34477777788888888888888888888
Q ss_pred HHHhcCCc
Q 038852 271 ELKQRCLV 278 (851)
Q Consensus 271 ~~~~~~~~ 278 (851)
++-++|+.
T Consensus 145 ~ACekG~k 152 (161)
T PF09205_consen 145 EACEKGLK 152 (161)
T ss_dssp HHHHTT-H
T ss_pred HHHHhchH
Confidence 88777654
No 290
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.67 E-value=0.21 Score=44.72 Aligned_cols=137 Identities=15% Similarity=0.236 Sum_probs=68.6
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHhcCCH
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLV---YNNLISGFLNLGNL 262 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~---~~~Li~~~~~~g~~ 262 (851)
.-.|.+++..+++.+..... +..-+|-+|--....-+-+-.+++++.+-+. + |... ...++.+|.+.|.
T Consensus 13 ildG~V~qGveii~k~v~Ss----ni~E~NWvICNiiDaa~C~yvv~~LdsIGki-F--Dis~C~NlKrVi~C~~~~n~- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS----NIKEYNWVICNIIDAADCDYVVETLDSIGKI-F--DISKCGNLKRVIECYAKRNK- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS-----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG-S---GGG-S-THHHHHHHHHTT--
T ss_pred HHhchHHHHHHHHHHHcCcC----CccccceeeeecchhhchhHHHHHHHHHhhh-c--CchhhcchHHHHHHHHHhcc-
Confidence 34567777777777776654 4445555655555555555555555554332 1 2211 1223333333332
Q ss_pred HHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 038852 263 EKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQM 342 (851)
Q Consensus 263 ~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m 342 (851)
+.......++.+...|+-+.-.+++.++.+ +-.+++.....+..+|.+.|+..++-+++.++
T Consensus 85 -----------------~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 85 -----------------LSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEA 146 (161)
T ss_dssp -------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred -----------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 222333344455666666666666666654 22345566666777777777777777777777
Q ss_pred HHcCCC
Q 038852 343 LDNHQP 348 (851)
Q Consensus 343 ~~~~~~ 348 (851)
.++|++
T Consensus 147 CekG~k 152 (161)
T PF09205_consen 147 CEKGLK 152 (161)
T ss_dssp HHTT-H
T ss_pred HHhchH
Confidence 776653
No 291
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.66 E-value=0.87 Score=45.91 Aligned_cols=276 Identities=14% Similarity=0.210 Sum_probs=144.3
Q ss_pred CCCCCHHHHHHHHHHH-HHcCChhHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC----C
Q 038852 134 RIRPTVFTCNAIIAAM-YRAKRYDDAVALFKYFFDQADIVPN--IVSYNNLINTYCDEGKVDEGMNVFRRIIETA----P 206 (851)
Q Consensus 134 ~~~~~~~~~~~li~~~-~~~g~~~~A~~l~~~~~~~~~~~pd--~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~----~ 206 (851)
+-.||+..-|..-.+- .+..+.++|+.-|.+.++..|.+-+ ..++.-+|..+.+.|++++..+.|..++.-- -
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 3455554433322221 1345777888888887776554322 2345566777888888888877777765310 0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcc--
Q 038852 207 VGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSR--QLG---ADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVY-- 279 (851)
Q Consensus 207 ~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~--g~~---pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~-- 279 (851)
..-+..+.|.++.......+.+.-.++|+..++. ..+ .--.|-..|+..|...+++.+..++++.+...+-.-
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 0113445566666555555554444444433321 001 011244568888888888888888888776543221
Q ss_pred ---------chhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCCHHHHHHHHH-----HHHhCCCHHHHHHHHHHHHH
Q 038852 280 ---------DGVVNATFMEWWFNQGKDKEAMQSYKSLMERNF-RMTPATCNTLLE-----VLLKHEKKEEAQALFEQMLD 344 (851)
Q Consensus 280 ---------d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-~~~~~~~~~Li~-----~~~~~g~~~~A~~l~~~m~~ 344 (851)
-..+|..-+.+|....+-++...+|+..+.... -|.+.... +|+ +..+.|++++|..-|-++.+
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHh
Confidence 134566667777777777777778877665322 12222222 232 33466778777655544443
Q ss_pred cCCCC-CCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCC--ccCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038852 345 NHQPP-NIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPF--AMDVAGYNNIIARYCENEMLEEAEKLLRE 420 (851)
Q Consensus 345 ~~~~p-~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 420 (851)
.--.. +.....-.-|..|+.++.+.|- .-|+.- ..+++ .|.+.+...|+.+|- .+++.+-+.++..
T Consensus 260 NYDEsGspRRttCLKYLVLANMLmkS~i-----NPFDsQ----EAKPyKNdPEIlAMTnlv~aYQ-~NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 260 NYDESGSPRRTTCLKYLVLANMLMKSGI-----NPFDSQ----EAKPYKNDPEILAMTNLVAAYQ-NNDIIEFERILKS 328 (440)
T ss_pred cccccCCcchhHHHHHHHHHHHHHHcCC-----CCCccc----ccCCCCCCHHHHHHHHHHHHHh-cccHHHHHHHHHh
Confidence 21110 0000122235555666655542 111111 11122 234556677777764 3455555555544
No 292
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.65 E-value=0.022 Score=49.66 Aligned_cols=86 Identities=17% Similarity=0.277 Sum_probs=47.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHc
Q 038852 400 NIIARYCENEMLEEAEKLLREISTKSL-SPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITK 478 (851)
Q Consensus 400 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~ 478 (851)
..|..+...+++.....+|..+++.|+ .|...+|+.++.+.++..--..+ -.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~---------------------------ie 82 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSED---------------------------IE 82 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchh---------------------------HH
Confidence 344444455666666666666666665 55666666655554432110000 01
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 038852 479 GKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCN 512 (851)
Q Consensus 479 g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~ 512 (851)
++.-+.+.+|+.|+..+++|+..+|+.++..+.+
T Consensus 83 ~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 83 NKLTNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 1223445567777777778888888877776654
No 293
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.65 E-value=0.025 Score=55.42 Aligned_cols=101 Identities=16% Similarity=0.199 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhH
Q 038852 210 SSNTYRHLTKGFVDA-----GRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVN 284 (851)
Q Consensus 210 ~~~~~~~Li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~ 284 (851)
|..+|..++..|.+. |..+-....++.|.+.|+.-|..+|+.|++++=+ |.+- -..+|..+--.
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~h--------- 114 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMH--------- 114 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhcc---------
Confidence 566666666666643 4555555666666666666666666666666554 2221 11111111100
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Q 038852 285 ATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKH 329 (851)
Q Consensus 285 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~ 329 (851)
.-..-+-|+++++.|...|+-||..++..|+.++.+.
T Consensus 115 --------yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 115 --------YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred --------CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 0123445666777777777777777777777666443
No 294
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.47 Score=48.18 Aligned_cols=100 Identities=16% Similarity=0.176 Sum_probs=50.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH----cCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCH
Q 038852 320 NTLLEVLLKHEKKEEAQALFEQMLD----NHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDV 395 (851)
Q Consensus 320 ~~Li~~~~~~g~~~~A~~l~~~m~~----~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~ 395 (851)
..++.++.+.|.+.+|+.+...++. .+-+++. ..++..--.+|...+++.++..-+..+.......-..|-.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~L----i~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpql 204 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINL----ITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQL 204 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccce----eehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHH
Confidence 4477788888888888887665543 2223321 1223333345555666655555554443322222122222
Q ss_pred HHHHHHHHH--HHhcCCHHHHHHHHHHHHh
Q 038852 396 AGYNNIIAR--YCENEMLEEAEKLLREIST 423 (851)
Q Consensus 396 ~~~~~li~~--~~~~g~~~~A~~l~~~m~~ 423 (851)
..-..|+.+ .|...++..|..+|-+..+
T Consensus 205 qa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 205 QAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 222223322 2445567777777766655
No 295
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.57 E-value=0.084 Score=59.18 Aligned_cols=131 Identities=19% Similarity=0.217 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHH
Q 038852 318 TCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAG 397 (851)
Q Consensus 318 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~ 397 (851)
..+.++..+.+.|..+.|+.+... ..+- .....+.|+++.|.++.++.. +...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D--------------~~~r---FeLAl~lg~L~~A~~~a~~~~----------~~~~ 349 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTD--------------PDHR---FELALQLGNLDIALEIAKELD----------DPEK 349 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS---------------HHHH---HHHHHHCT-HHHHHHHCCCCS----------THHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCC--------------hHHH---hHHHHhcCCHHHHHHHHHhcC----------cHHH
Confidence 355566666666666666655332 2221 222336666666665544331 4555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHH
Q 038852 398 YNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELIT 477 (851)
Q Consensus 398 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~ 477 (851)
|..|.+...+.|+++-|++.|.+..+ |..|+-.|.-.|+.++-.++.+.+.+.|. ++..+.++..
T Consensus 350 W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~ 414 (443)
T PF04053_consen 350 WKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALL 414 (443)
T ss_dssp HHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHH
Confidence 66666666666666666666655431 44455555666666665555555555441 1223344445
Q ss_pred cCCHHHHHHHHHH
Q 038852 478 KGKVAECAPILTK 490 (851)
Q Consensus 478 ~g~~~~A~~ll~~ 490 (851)
.|++++.++++.+
T Consensus 415 lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 415 LGDVEECVDLLIE 427 (443)
T ss_dssp HT-HHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 5666655555544
No 296
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.56 E-value=0.034 Score=54.57 Aligned_cols=103 Identities=14% Similarity=0.185 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHH
Q 038852 394 DVAGYNNIIARYCE-----NEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFG 468 (851)
Q Consensus 394 d~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 468 (851)
+-.+|..+++.|.+ .|..+=....++.|.+.|+.-|..+|+.|++++=+ |.+. ...++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv----------------p~n~f 108 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV----------------PRNFF 108 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc----------------cccHH
Confidence 55666666666654 24455555555666666666666666666665543 2221 11111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 038852 469 TKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGL 515 (851)
Q Consensus 469 ~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~ 515 (851)
..++.- .-.+-+-|++++++|.+.|+.||..++..|+..+.+.+.
T Consensus 109 Q~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 109 QAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 111111 122346688899999999999999999998888866543
No 297
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.56 E-value=1.3 Score=48.46 Aligned_cols=55 Identities=18% Similarity=0.135 Sum_probs=34.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 038852 181 LINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSR 240 (851)
Q Consensus 181 Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 240 (851)
.+.+.-+.|+++...++...... ..++...|..+.. .+.++++++..+++++...
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~---~~~~~~~~~al~~--l~~~~~~~~~~~i~~~r~~ 58 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNE---DSPEYSFYRALLA--LRQGDYDEAKKYIEKARQL 58 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccC---CChhHHHHHHHHH--HhCccHHHHHHHHHHHHHH
Confidence 45677788999885555444422 2224444444443 3788888888888877653
No 298
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=2.1 Score=51.49 Aligned_cols=59 Identities=19% Similarity=0.390 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH---HHHHcCChhHHHHHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPT-VFTCNAIIA---AMYRAKRYDDAVALFKYF 165 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~-~~~~~~li~---~~~~~g~~~~A~~l~~~~ 165 (851)
+...+..++....+++|..+.+.....+.... ...+..+.. -+...|++++|+++|+++
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~ 372 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKS 372 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 78889999999999999988776543221111 111222222 245789999999999987
No 299
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=2.3 Score=50.16 Aligned_cols=176 Identities=15% Similarity=0.277 Sum_probs=91.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038852 179 NNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLN 258 (851)
Q Consensus 179 ~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~ 258 (851)
+.+-+.|.+.|+|++|+++-+.-.+. -..++..-+..|...++|..|-++|.++.+ .|..+.--+..
T Consensus 362 R~vWk~yLd~g~y~kAL~~ar~~p~~-----le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~ 428 (911)
T KOG2034|consen 362 RDVWKTYLDKGEFDKALEIARTRPDA-----LETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLE 428 (911)
T ss_pred HHHHHHHHhcchHHHHHHhccCCHHH-----HHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHh
Confidence 34556788899999998876543111 112556667788888999999999988743 24444445555
Q ss_pred cCCHHHHHHHHHHHHhcCCccchhhH-----HHHHHHHH-HcCCH----HHHHHHHHHHHH--------h-cCCCCHHHH
Q 038852 259 LGNLEKANELFDELKQRCLVYDGVVN-----ATFMEWWF-NQGKD----KEAMQSYKSLME--------R-NFRMTPATC 319 (851)
Q Consensus 259 ~g~~~~A~~~~~~~~~~~~~~d~~~~-----~~li~~~~-~~g~~----~~A~~l~~~~~~--------~-~~~~~~~~~ 319 (851)
..+.+.-..++.+=+++ +.++..+- .-+++.|. +.++. +++++.++.-.+ . ....+....
T Consensus 429 ~~~~~~L~~~L~KKL~~-lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nr 507 (911)
T KOG2034|consen 429 INQERALRTFLDKKLDR-LTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNR 507 (911)
T ss_pred cCCHHHHHHHHHHHHhh-CChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhH
Confidence 55555333333332222 22222221 12222222 22322 233333222111 0 001111223
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 038852 320 NTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382 (851)
Q Consensus 320 ~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 382 (851)
.+....+...|+.++++.+-.-+. .|..++..++..+.+++|++++.+-
T Consensus 508 etv~~l~~~~~~~e~ll~fA~l~~--------------d~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 508 ETVYQLLASHGRQEELLQFANLIK--------------DYEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334445556677766655443332 3556677777888888888887665
No 300
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.46 E-value=1.5 Score=47.96 Aligned_cols=65 Identities=18% Similarity=0.162 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcc---chhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 245 DSLVYNNLISGFLNLGNLEKANELFDELKQRCLVY---DGVVNATFMEWWFNQGKDKEAMQSYKSLME 309 (851)
Q Consensus 245 d~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~~~~ 309 (851)
...+|..++..+.+.|.++.|...+.++...+... +..+....++.+...|+.++|+..+++.++
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45678888899999999999999998887754221 445666667778888999999988888776
No 301
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.45 E-value=1.2 Score=44.94 Aligned_cols=274 Identities=13% Similarity=0.176 Sum_probs=157.3
Q ss_pred CCCCCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CC
Q 038852 169 ADIVPNIVSYNNLINT-YCDEGKVDEGMNVFRRIIETAPVGPS--SNTYRHLTKGFVDAGRIGEAVDLLRDMLSR---QL 242 (851)
Q Consensus 169 ~~~~pd~~~~~~Li~~-~~~~g~~~~A~~l~~~~~~~~~~~p~--~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~---g~ 242 (851)
.+..||+..-|-.-.. -.+..+.++|+.-|.++++..|.+-+ ..+...+|..+.+.+++++..+.|.+++.. .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 3445665433322111 12345789999999999988765433 235566899999999999999999888642 11
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--
Q 038852 243 --GADSLVYNNLISGFLNLGNLEKANELFDELKQR-----CLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFR-- 313 (851)
Q Consensus 243 --~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~-----~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~-- 313 (851)
.-+....+++++......+.+...++|+.-++. +-...-.+...|...|+..+++.+..++++.+....-.
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 123456677777766666666666666543321 12223345567888899999999988888887643111
Q ss_pred --CC-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCCCccCHHHHHH----HHHHHHHcCChHHHHHHH
Q 038852 314 --MT-------PATCNTLLEVLLKHEKKEEAQALFEQMLDNH-QPPNIQAVNSDTFNI----MVNECFKHGKFSEAIETF 379 (851)
Q Consensus 314 --~~-------~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~-~~p~~~~~~~~~~~~----L~~~~~~~g~~~~A~~~~ 379 (851)
.| ..+|..-|..|....+-.+...+|+..+... ..| .+.+... =+.+..+.|.+++|..-|
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIP-----HPlImGvIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIP-----HPLIMGVIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCC-----chHHHhHHHHcCCccccccchHHHHHhHH
Confidence 11 2456667788888888888888888876521 112 2222221 123456778888887665
Q ss_pred HHhccCCCCCCCcc--CHHHHHHHHHHHHhcCCHHHHHHHHHH--HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 038852 380 KKAGTHPKSKPFAM--DVAGYNNIIARYCENEMLEEAEKLLRE--ISTKSLSPDVTTFRTLIDAYLKVERIDDALELF 453 (851)
Q Consensus 380 ~~~~~~~~~~~~~~--d~~~~~~li~~~~~~g~~~~A~~l~~~--m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~ 453 (851)
-++-......+... ...-|..|+.++.+.|- .-|+. +.-..-.|.+...+.|+.+|-. +++.+-.+++
T Consensus 255 FEAFKNYDEsGspRRttCLKYLVLANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il 326 (440)
T KOG1464|consen 255 FEAFKNYDESGSPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERIL 326 (440)
T ss_pred HHHHhcccccCCcchhHHHHHHHHHHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHH
Confidence 55544433333211 12224444444444331 01111 1111123445667778888754 4444444443
No 302
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.40 E-value=0.1 Score=58.48 Aligned_cols=130 Identities=15% Similarity=0.241 Sum_probs=73.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHH
Q 038852 284 NATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMV 363 (851)
Q Consensus 284 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~ 363 (851)
...++..+.+.|..+.|+.+..+-. .-.+...+.|+++.|.++.++.. +...|..|+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~~-----------~~~~W~~Lg 354 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKELD-----------DPEKWKQLG 354 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCCS-----------THHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhcC-----------cHHHHHHHH
Confidence 4455555555555555555543211 12333456677777766543221 456777777
Q ss_pred HHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 038852 364 NECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKV 443 (851)
Q Consensus 364 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~ 443 (851)
....+.|+++-|.+.|.++.+ |..|+-.|.-.|+.+.-.++.+.....|. ++....++...
T Consensus 355 ~~AL~~g~~~lAe~c~~k~~d-------------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~l 415 (443)
T PF04053_consen 355 DEALRQGNIELAEECYQKAKD-------------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLL 415 (443)
T ss_dssp HHHHHTTBHHHHHHHHHHCT--------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhhcC-------------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHc
Confidence 777777777777777777632 55666667777777666666666555432 44445555566
Q ss_pred CCHHHHHHHHHH
Q 038852 444 ERIDDALELFNR 455 (851)
Q Consensus 444 g~~~~A~~~~~~ 455 (851)
|++++..+++.+
T Consensus 416 gd~~~cv~lL~~ 427 (443)
T PF04053_consen 416 GDVEECVDLLIE 427 (443)
T ss_dssp T-HHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 777666665544
No 303
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.32 E-value=1 Score=52.60 Aligned_cols=126 Identities=15% Similarity=0.170 Sum_probs=72.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC
Q 038852 111 VQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGK 190 (851)
Q Consensus 111 l~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~ 190 (851)
.+..+-..++++.+.+.+...- .-.++|..+.+.|..+-|+.+.+. ..+ -...+..+|+
T Consensus 600 FKlALi~k~ydeVl~lI~ns~L--------vGqaiIaYLqKkgypeiAL~FVkD----------~~t---RF~LaLe~gn 658 (1202)
T KOG0292|consen 600 FKLALLNKKYDEVLHLIKNSNL--------VGQAIIAYLQKKGYPEIALHFVKD----------ERT---RFELALECGN 658 (1202)
T ss_pred HHHHHHhhhhHHHHHHHHhcCc--------ccHHHHHHHHhcCCcceeeeeecC----------cch---heeeehhcCC
Confidence 3444455666766655544221 113445545566666666655432 111 1223456788
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 191 VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFD 270 (851)
Q Consensus 191 ~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~ 270 (851)
++.|++...++ . |..+|..|+....+.|+.+-|+-.|++... |..|--.|.-.|+.++-.++.+
T Consensus 659 le~ale~akkl-----d--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~ 722 (1202)
T KOG0292|consen 659 LEVALEAAKKL-----D--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMK 722 (1202)
T ss_pred HHHHHHHHHhc-----C--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHH
Confidence 88777765544 2 555788888888888888888777776553 3334444555566666665555
Q ss_pred HHH
Q 038852 271 ELK 273 (851)
Q Consensus 271 ~~~ 273 (851)
.+.
T Consensus 723 iae 725 (1202)
T KOG0292|consen 723 IAE 725 (1202)
T ss_pred HHH
Confidence 443
No 304
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.31 E-value=0.1 Score=46.46 Aligned_cols=92 Identities=17% Similarity=0.133 Sum_probs=60.8
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcC
Q 038852 148 AMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS--SNTYRHLTKGFVDAG 225 (851)
Q Consensus 148 ~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~--~~~~~~Li~~~~~~g 225 (851)
++...|+++.|++.|...+.... .+...||.-..++.-.|+.++|++-++++++..+..-. ..+|.--...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P--~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAP--ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcc--cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 45567777777777777765432 34566777777777777777777777777776544311 123444555666777
Q ss_pred CHHHHHHHHHHHHhcC
Q 038852 226 RIGEAVDLLRDMLSRQ 241 (851)
Q Consensus 226 ~~~~A~~l~~~m~~~g 241 (851)
+.+.|..-|+.+.+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7777777777777665
No 305
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.23 E-value=2.6 Score=46.56 Aligned_cols=91 Identities=14% Similarity=0.145 Sum_probs=65.1
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHH
Q 038852 158 AVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVD-AGRIGEAVDLLRD 236 (851)
Q Consensus 158 A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~-~g~~~~A~~l~~~ 236 (851)
...+|+.+..+ +.-|+..|...+..+.+.+.+.+...+|..|+...|..+|..++.+ .-... ..+++.|..+|.+
T Consensus 90 Iv~lyr~at~r--f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA--~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 90 IVFLYRRATNR--FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAA--KWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHh--cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhh--hhHHhhccchHHHHHHHHH
Confidence 34556665443 3358899999998888888899999999999999998666554433 33333 3349999999999
Q ss_pred HHhcCCCCCHHHHHHHH
Q 038852 237 MLSRQLGADSLVYNNLI 253 (851)
Q Consensus 237 m~~~g~~pd~~~~~~Li 253 (851)
.++.+.. +...|....
T Consensus 166 gLR~npd-sp~Lw~eyf 181 (568)
T KOG2396|consen 166 GLRFNPD-SPKLWKEYF 181 (568)
T ss_pred HhhcCCC-ChHHHHHHH
Confidence 9988655 555554433
No 306
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=1.5 Score=44.22 Aligned_cols=121 Identities=13% Similarity=0.137 Sum_probs=49.4
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 038852 150 YRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCD-EGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIG 228 (851)
Q Consensus 150 ~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~-~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~ 228 (851)
.+..+-..|+.+.++++..+.-.-++..|...+ +.. ..++.+-++.++++++.++. |-.+|..-=......|+..
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~i--L~~l~~dL~~El~~l~eI~e~npK--NYQvWHHRr~ive~l~d~s 129 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVI--LRHLMSDLNKELEYLDEIIEDNPK--NYQVWHHRRVIVELLGDPS 129 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcccchHHHHHHHH--HHHhHHHHHHHHHHHHHHHHhCcc--chhHHHHHHHHHHHhcCcc
Confidence 344445555555555554332222222222211 111 12344445555555554433 3334433333333333433
Q ss_pred -HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038852 229 -EAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 229 -~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~ 275 (851)
.-+++.++|+..+-+ +-.+|..---++...++++.-+.+..++++.
T Consensus 130 ~rELef~~~~l~~DaK-NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~ 176 (318)
T KOG0530|consen 130 FRELEFTKLMLDDDAK-NYHAWSHRQWVLRFFKDYEDELAYADELLEE 176 (318)
T ss_pred cchHHHHHHHHhcccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 444444445443322 3344444444444444444444444444443
No 307
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=96.19 E-value=0.69 Score=54.61 Aligned_cols=91 Identities=9% Similarity=0.019 Sum_probs=37.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHH
Q 038852 286 TFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNE 365 (851)
Q Consensus 286 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~ 365 (851)
....++.-.|.+|.|++++-+ ......+.+. ++-++...|-+......-..++.....-. ...-+..|+..
T Consensus 263 ~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH---~AIaL~~~gLL~~~~~~~~~lls~~~~~~----~~ln~arLI~~ 333 (613)
T PF04097_consen 263 LYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVH---FAIALAYYGLLRVSDSSSAPLLSVDPGDP----PPLNFARLIGQ 333 (613)
T ss_dssp -HHHHHHHTT-HHHHHHHHHT----T-HHHHHH---HHHHHHHTT----------------------------HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHh--hccCcccHHH---HHHHHHHcCCCCCCCccccceeeecCCCC----CCcCHHHHHHH
Confidence 344556778889998888776 1111122222 33333333433322222233332111100 12456777777
Q ss_pred HHH---cCChHHHHHHHHHhccC
Q 038852 366 CFK---HGKFSEAIETFKKAGTH 385 (851)
Q Consensus 366 ~~~---~g~~~~A~~~~~~~~~~ 385 (851)
|.+ ..+..+|+++|--+...
T Consensus 334 Y~~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 334 YTRSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp HHHTTTTT-HHHHHHHHHGGGGS
T ss_pred HHHHHhccCHHHHHHHHHHHHHc
Confidence 765 45677888888776543
No 308
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.55 Score=47.31 Aligned_cols=226 Identities=11% Similarity=0.031 Sum_probs=131.4
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHH-cCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHH
Q 038852 327 LKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFK-HGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARY 405 (851)
Q Consensus 327 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~ 405 (851)
.+..+...|+++-+.++..+.. +..+|..--.++.. ..++.+-+++++++.+..++ +..+|..--...
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpA------nYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npK-----NYQvWHHRr~iv 122 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPA------NYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPK-----NYQVWHHRRVIV 122 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcc------cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcc-----chhHHHHHHHHH
Confidence 3445567777888777774332 34444333222222 23466777888887766555 666665444444
Q ss_pred HhcCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHH--
Q 038852 406 CENEMLE-EAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVA-- 482 (851)
Q Consensus 406 ~~~g~~~-~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~-- 482 (851)
...|+.. .-+++.++|+...-+ +-.+|..--.++...+.++.-+.+..++++.++..+..|...++......|-.+
T Consensus 123 e~l~d~s~rELef~~~~l~~DaK-NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~ 201 (318)
T KOG0530|consen 123 ELLGDPSFRELEFTKLMLDDDAK-NYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKA 201 (318)
T ss_pred HHhcCcccchHHHHHHHHhcccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHH
Confidence 4456665 667788888774333 666777777777778889999999999999988888777654332222222222
Q ss_pred ---HHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-cC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH------hcCC
Q 038852 483 ---ECAPILTKMGEKDPKPDFLIYDVVVRGLCN-EG--LFDMSKDIVDQMMKYGVGITPALQDFVRETFG------KAGR 550 (851)
Q Consensus 483 ---~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~-~g--~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~------~~G~ 550 (851)
.-+.+..+++.. +.-|...|+.|...+.. .| ...+...+...+...--.-.+....+|+++|. +.+.
T Consensus 202 ~le~El~yt~~~I~~-vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~~~~~~ 280 (318)
T KOG0530|consen 202 ELERELNYTKDKILL-VPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLYAEDALAYKSSA 280 (318)
T ss_pred HHHHHHHHHHHHHHh-CCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHHHHHHhhccccc
Confidence 223334444443 33366777766655553 34 13344455555542222356677777777772 2344
Q ss_pred HH---HHHHHHHhhhhcC
Q 038852 551 GE---EIERVLNADRWGY 565 (851)
Q Consensus 551 ~~---eA~~ll~~~~~~~ 565 (851)
-+ +|.++++.+..++
T Consensus 281 ~~~a~~a~~ly~~La~~~ 298 (318)
T KOG0530|consen 281 EELARKAVKLYEDLAIKV 298 (318)
T ss_pred hHHHHHHHHHHHHHhhcc
Confidence 44 6777777766443
No 309
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.13 E-value=4.3 Score=48.15 Aligned_cols=54 Identities=9% Similarity=0.142 Sum_probs=25.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 038852 323 LEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382 (851)
Q Consensus 323 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 382 (851)
+......++++.+...+..|-..... ...-..-++.++...|+.++|..+|+.+
T Consensus 319 ~r~Al~~~dw~~~~~~i~~L~~~~~~------~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 319 VRMALGTGDRRGLNTWLARLPMEAKE------KDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHccCHHHHHHHHHhcCHhhcc------CHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333555555555555544321111 2334445555555555555555555554
No 310
>PRK09687 putative lyase; Provisional
Probab=96.07 E-value=2.4 Score=44.68 Aligned_cols=78 Identities=9% Similarity=0.036 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHhcCCCCCHHHH
Q 038852 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGR----IGEAVDLLRDMLSRQLGADSLVY 249 (851)
Q Consensus 174 d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~----~~~A~~l~~~m~~~g~~pd~~~~ 249 (851)
|.......+.++...|. +++...+.++... .|...-...+.++...|+ ..+++.++..+... .+|..+-
T Consensus 36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~----~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG-QDVFRLAIELCSS----KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CHHHHHHHHHHHHhcCc-chHHHHHHHHHhC----CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 44445555555555554 2333444444332 144444555555666554 24566666655333 2244444
Q ss_pred HHHHHHHHh
Q 038852 250 NNLISGFLN 258 (851)
Q Consensus 250 ~~Li~~~~~ 258 (851)
...+.++..
T Consensus 109 ~~A~~aLG~ 117 (280)
T PRK09687 109 ASAINATGH 117 (280)
T ss_pred HHHHHHHhc
Confidence 444444433
No 311
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.06 E-value=1.3 Score=51.88 Aligned_cols=79 Identities=6% Similarity=0.021 Sum_probs=49.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038852 478 KGKVAECAPILTKMGEKDPKPDF--LIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIE 555 (851)
Q Consensus 478 ~g~~~~A~~ll~~m~~~~~~pd~--~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~ 555 (851)
.+..+.++++-.-.....+.|-. .++...+..+.+.+++..|..+..++++.+..++.......+...+. .+..+|.
T Consensus 1060 ~~~~~~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~~a~e-knp~Da~ 1138 (1202)
T KOG0292|consen 1060 KPNLEQQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIKQAAE-KNPTDAY 1138 (1202)
T ss_pred CchHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhh-cCccccc
Confidence 34566665555555555555543 45667788899999999999999999988755554443333333333 3344444
Q ss_pred HH
Q 038852 556 RV 557 (851)
Q Consensus 556 ~l 557 (851)
++
T Consensus 1139 ~l 1140 (1202)
T KOG0292|consen 1139 EL 1140 (1202)
T ss_pred cc
Confidence 43
No 312
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.02 E-value=0.099 Score=56.70 Aligned_cols=106 Identities=11% Similarity=0.003 Sum_probs=62.2
Q ss_pred HHhcCCHHHHHHHHHHHHhC---C--CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------cCCcc------
Q 038852 405 YCENEMLEEAEKLLREISTK---S--LSP---DVTTFRTLIDAYLKVERIDDALELFNRMVE-------SGLRV------ 463 (851)
Q Consensus 405 ~~~~g~~~~A~~l~~~m~~~---g--~~p---d~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~-------~~~~~------ 463 (851)
+...|++.+|.+++...--. | +.| ....||.|+..+...|.+..+..+|.+++. .|+++
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 44466777777666543111 1 111 123356666666667777777777766663 23222
Q ss_pred -----chhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 038852 464 -----VVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCN 512 (851)
Q Consensus 464 -----~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~ 512 (851)
...+|+ ....|...|+.-.|.+.|.+.... +.-+...|..|..+|..
T Consensus 330 s~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 330 SQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 222333 455677788888888888777654 33477788888888764
No 313
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.00 E-value=0.44 Score=50.49 Aligned_cols=160 Identities=11% Similarity=0.057 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--c----CCHHHHHHHHHHHHHcCCcc----chhHHHHHHHHHHHcCC
Q 038852 411 LEEAEKLLREISTKSLSPDVTTFRTLIDAYLK--V----ERIDDALELFNRMVESGLRV----VVSFGTKVFNELITKGK 480 (851)
Q Consensus 411 ~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~--~----g~~~~A~~~~~~m~~~~~~~----~~~~~~~L~~~~~~~g~ 480 (851)
+++.+.+++.|.+.|+.-+..+|.+....... . ....+|.++|+.|.+...-. +..+.. ++ +. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~-lL-A~-~~~~ 154 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAA-LL-AM-TSED 154 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHH-HH-hc-cccc
Confidence 45667788888888888777666553333322 2 23567889999998864322 222211 11 11 2222
Q ss_pred ----HHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHh-cCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 038852 481 ----VAECAPILTKMGEKDPKPD-FLIYDVVVRGLCN-EGL--FDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGE 552 (851)
Q Consensus 481 ----~~~A~~ll~~m~~~~~~pd-~~~~~~ll~a~~~-~g~--~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~ 552 (851)
.+++..+|+.+.+.|+..+ ..-+.+-+-+++. ... ..++.++++.+.+.|+++....|..++-+-.-.+..+
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~ 234 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEE 234 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchH
Confidence 3566777888888776543 3233333333322 211 5578888999999999888888777765555555554
Q ss_pred HHHHHHHhhhhcCCCCCCCCC
Q 038852 553 EIERVLNADRWGYAAPVPPPR 573 (851)
Q Consensus 553 eA~~ll~~~~~~~~~~p~~~~ 573 (851)
+..+-+.++.....+.++..|
T Consensus 235 ~~~~~i~ev~~~L~~~k~~~~ 255 (297)
T PF13170_consen 235 KIVEEIKEVIDELKEQKGFGW 255 (297)
T ss_pred HHHHHHHHHHHHHhhCcccCh
Confidence 666666665555554444433
No 314
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=95.99 E-value=0.88 Score=53.74 Aligned_cols=90 Identities=16% Similarity=0.029 Sum_probs=41.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHH
Q 038852 322 LLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNI 401 (851)
Q Consensus 322 Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~l 401 (851)
...++.-.|.++.|++++-+... +..--..++.++...|-+......-..+........ ...-+..|
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~~~~----------~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~---~~ln~arL 330 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYRNEF----------NRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDP---PPLNFARL 330 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT--T-----------HHHHHHHHHHHHHTT---------------------------HHHH
T ss_pred HHHHHHHHhhHHHHHHHHHhhcc----------CcccHHHHHHHHHHcCCCCCCCccccceeeecCCCC---CCcCHHHH
Confidence 45666778999999999887111 222333444444455544333332233332222211 11447778
Q ss_pred HHHHHh---cCCHHHHHHHHHHHHhC
Q 038852 402 IARYCE---NEMLEEAEKLLREISTK 424 (851)
Q Consensus 402 i~~~~~---~g~~~~A~~l~~~m~~~ 424 (851)
|..|++ ..+..+|+++|--+...
T Consensus 331 I~~Y~~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 331 IGQYTRSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp HHHHHHTTTTT-HHHHHHHHHGGGGS
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHc
Confidence 888876 56788898888776654
No 315
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.90 E-value=0.14 Score=46.69 Aligned_cols=84 Identities=13% Similarity=0.162 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHH--------------HcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFF--------------DQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIET 204 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~--------------~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~ 204 (851)
..++..+|.++++.|+.+....+++... ......|+..+..+++.+|+..|++..|+++++...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3445555666666666666655555432 12233455556666666666666666666666666665
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 038852 205 APVGPSSNTYRHLTKGFV 222 (851)
Q Consensus 205 ~~~~p~~~~~~~Li~~~~ 222 (851)
.++..+..+|..|+.-..
T Consensus 82 Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 555555556655555443
No 316
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.88 E-value=1.3 Score=49.53 Aligned_cols=117 Identities=10% Similarity=0.090 Sum_probs=77.8
Q ss_pred HHHHHHHHcCCC--CCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 038852 125 YLARQAVFSRIR--PTVFTCNAIIAAMYR-AKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRI 201 (851)
Q Consensus 125 ~l~~~~~~~~~~--~~~~~~~~li~~~~~-~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~ 201 (851)
.+...++..+.. +....+..+..+|.+ .|+..+|+.++...+.-..-.-......+|+..+.+.|...+|--++..+
T Consensus 196 ~~~~~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA 275 (886)
T KOG4507|consen 196 DDIGHLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAA 275 (886)
T ss_pred HHHHHHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehh
Confidence 344444444433 233444556666665 69999999998887553221112335667888889999999888888777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 038852 202 IETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG 243 (851)
Q Consensus 202 ~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~ 243 (851)
.+..++- ..-+..+..+++..+++...+..|+...+.+..
T Consensus 276 ~~dA~~~--t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~ 315 (886)
T KOG4507|consen 276 LDDADFF--TSNYYTLGNIYAMLGEYNHSVLCYDHALQARPG 315 (886)
T ss_pred ccCCccc--cccceeHHHHHHHHhhhhhhhhhhhhhhccCcc
Confidence 6654331 123667888888999999888888888877644
No 317
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.84 E-value=0.65 Score=55.61 Aligned_cols=29 Identities=7% Similarity=0.200 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhccCC
Q 038852 358 TFNIMVNECFKHGKFSEAIETFKKAGTHP 386 (851)
Q Consensus 358 ~~~~L~~~~~~~g~~~~A~~~~~~~~~~~ 386 (851)
-|..|+..|...|+.++|+++|.+.....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~ 534 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDED 534 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccc
Confidence 56778888888888888888888876543
No 318
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.80 E-value=0.39 Score=44.76 Aligned_cols=42 Identities=5% Similarity=0.152 Sum_probs=18.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 038852 180 NLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVD 223 (851)
Q Consensus 180 ~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~ 223 (851)
.++..+...+.....+.+++.++..+. .+....+.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~--~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS--ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc--cchhHHHHHHHHHHH
Confidence 344444444444455555554444432 233344444444443
No 319
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.77 E-value=0.7 Score=48.98 Aligned_cols=132 Identities=10% Similarity=0.136 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHH--cC----ChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHH
Q 038852 332 KEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFK--HG----KFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARY 405 (851)
Q Consensus 332 ~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~--~g----~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~ 405 (851)
+++.+.+++.+.+.|+.- +..+|......... .. ...+|.++|+.|.+..+.-.-. +...+..|+..
T Consensus 78 ~~~~~~~y~~L~~~gFk~-----~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~-~D~~~a~lLA~- 150 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKR-----SEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSP-EDYPFAALLAM- 150 (297)
T ss_pred HHHHHHHHHHHHHhccCc-----cChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCc-cchhHHHHHhc-
Confidence 344566777777776664 33333332222222 11 2456677777776554432222 22333333322
Q ss_pred HhcCC----HHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCccchhHHHHH
Q 038852 406 CENEM----LEEAEKLLREISTKSLSPDV--TTFRTLIDAYLKVER--IDDALELFNRMVESGLRVVVSFGTKV 471 (851)
Q Consensus 406 ~~~g~----~~~A~~l~~~m~~~g~~pd~--~~~~~Ll~~~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~L 471 (851)
..++ .++++.+|+.+.+.|+..+. .....++..+..... ..++.++++.+.+.+++.....|..+
T Consensus 151 -~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 151 -TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred -ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 2222 35566777777776655432 222333322221111 45677788888888877766666644
No 320
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.74 E-value=3.5 Score=43.86 Aligned_cols=47 Identities=19% Similarity=0.218 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCC
Q 038852 412 EEAEKLLREISTKSLSPDVTTFRTLIDAYLK----VERIDDALELFNRMVESGL 461 (851)
Q Consensus 412 ~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~----~g~~~~A~~~~~~m~~~~~ 461 (851)
..|+..|.++...+ +......|+.+|.. ..++++|..+|+++.+.|.
T Consensus 172 ~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 172 KKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 46777777777664 45555556655543 3478888888888888875
No 321
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.71 E-value=0.4 Score=44.68 Aligned_cols=129 Identities=7% Similarity=0.133 Sum_probs=76.8
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT 184 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~ 184 (851)
.....++..+...+.......+++.++..+ ..+....|.++..|++.+ .++.++.++. . .+......+++.
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~----~~~yd~~~~~~~ 78 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K----SNHYDIEKVGKL 78 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c----cccCCHHHHHHH
Confidence 455667777777778888888888877665 356677788888777653 3344444431 1 122234456666
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038852 185 YCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDA-GRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLN 258 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~-g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~ 258 (851)
|.+.+.++++..++.++- -|...+..+... ++++.|++++.+.. +...|..++..+..
T Consensus 79 c~~~~l~~~~~~l~~k~~----------~~~~Al~~~l~~~~d~~~a~~~~~~~~------~~~lw~~~~~~~l~ 137 (140)
T smart00299 79 CEKAKLYEEAVELYKKDG----------NFKDAIVTLIEHLGNYEKAIEYFVKQN------NPELWAEVLKALLD 137 (140)
T ss_pred HHHcCcHHHHHHHHHhhc----------CHHHHHHHHHHcccCHHHHHHHHHhCC------CHHHHHHHHHHHHc
Confidence 777777777777776652 122233333433 66777777666421 55566666666553
No 322
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.69 E-value=1.8 Score=46.72 Aligned_cols=61 Identities=10% Similarity=0.107 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHH
Q 038852 228 GEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEW 290 (851)
Q Consensus 228 ~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~ 290 (851)
+.-+.+|+++++.+.. +...+..++..+.+..+.++..+.+++++..... +..+|..+++.
T Consensus 48 E~klsilerAL~~np~-~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~ 108 (321)
T PF08424_consen 48 ERKLSILERALKHNPD-SERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDF 108 (321)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHH
Confidence 3445555665555443 5555555666666666666666666666655433 44445444443
No 323
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=95.68 E-value=5.8 Score=46.07 Aligned_cols=67 Identities=19% Similarity=0.154 Sum_probs=37.6
Q ss_pred CCCccHHHHHHHHHHcCCHHHHHHHHHHHHH-cCC--CCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHcC
Q 038852 102 GPRLNLHNRVQSLIRAGDLDAASYLARQAVF-SRI--RPTVFTCNAIIAAMYR-AKRYDDAVALFKYFFDQA 169 (851)
Q Consensus 102 ~~~~~l~~ll~~l~~~g~~~~A~~l~~~~~~-~~~--~~~~~~~~~li~~~~~-~g~~~~A~~l~~~~~~~~ 169 (851)
-|++-...-++.++.+.++.+|..+.+.-.- .++ .-|...+..-+..+.. +++. +-+.+|-+.+...
T Consensus 661 yPrImvLa~Vrk~i~akkYkdAf~vCrthrv~l~Il~DydpelfienlevFv~~~~rv-dyl~lF~~~L~~d 731 (1243)
T COG5290 661 YPRIMVLAFVRKLIAAKKYKDAFDVCRTHRVPLGILLDYDPELFIENLEVFVTECRRV-DYLSLFSEALQRD 731 (1243)
T ss_pred cceeeeHHHHHHHHHHhhhhHHHHHHHheeeccceeecCChHHHHhhHHHHHHhhhhh-hHHHHHHHhcChh
Confidence 3455667788999999999999998876321 111 2233333332333332 2333 3455666665543
No 324
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.65 E-value=0.28 Score=44.66 Aligned_cols=58 Identities=17% Similarity=0.099 Sum_probs=44.9
Q ss_pred CCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcC
Q 038852 387 KSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREIST-KSLSPDVTTFRTLIDAYLKVE 444 (851)
Q Consensus 387 ~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd~~~~~~Ll~~~~~~g 444 (851)
...+..|+..+..+++.+|+..|++..|+++++.+.+ .+++.+..+|..|+.-+...-
T Consensus 44 ~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 44 PSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 5566778888889999999999999999998888765 356667788888887655443
No 325
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=2.1 Score=43.72 Aligned_cols=202 Identities=9% Similarity=0.050 Sum_probs=114.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHHcCChhHHHHHHHH---HHHcCCCCCCHHH
Q 038852 108 HNRVQSLIRAGDLDAASYLARQAVFSRIRPTVF-------TCNAIIAAMYRAKRYDDAVALFKY---FFDQADIVPNIVS 177 (851)
Q Consensus 108 ~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~l~~~---~~~~~~~~pd~~~ 177 (851)
..+++.+.+.+++++|+.++.+++..|...|.. +...+...|...|++..-.++... ++....-...+..
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 467788899999999999999999888765543 444677788888887765444332 2222111123334
Q ss_pred HHHHHHHHHHc-CChHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HhcCCCCCHHH
Q 038852 178 YNNLINTYCDE-GKVDEGMNVFRRIIETAPVG----PSSNTYRHLTKGFVDAGRIGEAVDLLRDM----LSRQLGADSLV 248 (851)
Q Consensus 178 ~~~Li~~~~~~-g~~~~A~~l~~~~~~~~~~~----p~~~~~~~Li~~~~~~g~~~~A~~l~~~m----~~~g~~pd~~~ 248 (851)
..+||..+-.. ..++.-++++...++..... .....-..+|..+.+.|.+.+|+.+...+ .+.+-+++..+
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 45555544332 44666666666655432110 01112245778888999999998866544 44444444332
Q ss_pred HH-HHHHHHHhcCCHHHHHHHHHHHHhcC----CccchhhHHHHHHH--HHHcCCHHHHHHHHHHHHH
Q 038852 249 YN-NLISGFLNLGNLEKANELFDELKQRC----LVYDGVVNATFMEW--WFNQGKDKEAMQSYKSLME 309 (851)
Q Consensus 249 ~~-~Li~~~~~~g~~~~A~~~~~~~~~~~----~~~d~~~~~~li~~--~~~~g~~~~A~~l~~~~~~ 309 (851)
.. .=-.+|.+..++.++..-+..+.... ..|-...-..|+.+ .|...++..|..+|-+..+
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 22 22345666667776666665544321 11122222223322 3445567777777776665
No 326
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=95.61 E-value=1 Score=48.61 Aligned_cols=62 Identities=16% Similarity=0.235 Sum_probs=45.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038852 469 TKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGV 531 (851)
Q Consensus 469 ~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~ 531 (851)
.+|+.-|...|++.+|..+++++--- +--..+.+.+++.+..+.|+-...+.+++...+.|+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 35778888889999998888776432 112456777888888888887777888877776654
No 327
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.60 E-value=0.2 Score=48.28 Aligned_cols=91 Identities=12% Similarity=0.261 Sum_probs=45.4
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 038852 148 AMYRAKRYDDAVALFKYFFDQADIVPN---IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDA 224 (851)
Q Consensus 148 ~~~~~g~~~~A~~l~~~~~~~~~~~pd---~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~ 224 (851)
-+++.|+|++|..-|.+++......+. .+.|..-+.++++.+.++.|++-..++++.++. ...+....+.+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt--y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT--YEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch--hHHHHHHHHHHHHhh
Confidence 344556666666666555543221111 234444455555555555555555555555433 333333334455555
Q ss_pred CCHHHHHHHHHHHHhc
Q 038852 225 GRIGEAVDLLRDMLSR 240 (851)
Q Consensus 225 g~~~~A~~l~~~m~~~ 240 (851)
..+++|++-|.++++.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 5555555555555554
No 328
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.58 E-value=0.39 Score=46.31 Aligned_cols=91 Identities=20% Similarity=0.211 Sum_probs=55.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHH
Q 038852 291 WFNQGKDKEAMQSYKSLMERNFRMT----PATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNEC 366 (851)
Q Consensus 291 ~~~~g~~~~A~~l~~~~~~~~~~~~----~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~ 366 (851)
+++.|++++|..-|.++++...... .+.|..-+.++.+.++++.|++-..++++.+.. ...++..-+.+|
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt------y~kAl~RRAeay 178 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT------YEKALERRAEAY 178 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch------hHHHHHHHHHHH
Confidence 4455555555555555554432221 234555566777777777777777777764332 344555556677
Q ss_pred HHcCChHHHHHHHHHhccCCC
Q 038852 367 FKHGKFSEAIETFKKAGTHPK 387 (851)
Q Consensus 367 ~~~g~~~~A~~~~~~~~~~~~ 387 (851)
.+..++++|++-|+++.+..+
T Consensus 179 ek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCc
Confidence 777788888888877766544
No 329
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.56 E-value=2 Score=45.63 Aligned_cols=116 Identities=12% Similarity=0.044 Sum_probs=57.9
Q ss_pred ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-----
Q 038852 190 KVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVD----AGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLG----- 260 (851)
Q Consensus 190 ~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g----- 260 (851)
+..+|+++|..+.+.+ +......|...|.. ..+..+|..+|+++.+.|...-..+...+...|..-+
T Consensus 92 ~~~~A~~~~~~~a~~g----~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 92 DKTKAADWYRCAAADG----LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred cHHHHHHHHHHHhhcc----cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcc
Confidence 3555666666544432 33344445555444 2356666666666666654321222334444443321
Q ss_pred --CHHHHHHHHHHHHhcCCccchhhHHHHHHHHHH----cCCHHHHHHHHHHHHHhcC
Q 038852 261 --NLEKANELFDELKQRCLVYDGVVNATFMEWWFN----QGKDKEAMQSYKSLMERNF 312 (851)
Q Consensus 261 --~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~----~g~~~~A~~l~~~~~~~~~ 312 (851)
+...|...|.++...+ +......+..+|.. ..+.++|...|+...+.+.
T Consensus 168 ~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 168 AYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred cHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 2235666666655554 33344444444433 2366677777777766654
No 330
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=95.52 E-value=6.6 Score=45.63 Aligned_cols=63 Identities=16% Similarity=0.274 Sum_probs=34.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCC--CCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCC
Q 038852 144 AIIAAMYRAKRYDDAVALFKYFFDQADIV--PNIVSYNNLINTYCD-EGKVDEGMNVFRRIIETAPV 207 (851)
Q Consensus 144 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~--pd~~~~~~Li~~~~~-~g~~~~A~~l~~~~~~~~~~ 207 (851)
+.++-+....+|.+|..+.+.-.-..++- -|...|..=+..+.. +++. +-+.+|-++++.+.+
T Consensus 668 a~Vrk~i~akkYkdAf~vCrthrv~l~Il~DydpelfienlevFv~~~~rv-dyl~lF~~~L~~ddv 733 (1243)
T COG5290 668 AFVRKLIAAKKYKDAFDVCRTHRVPLGILLDYDPELFIENLEVFVTECRRV-DYLSLFSEALQRDDV 733 (1243)
T ss_pred HHHHHHHHHhhhhHHHHHHHheeeccceeecCChHHHHhhHHHHHHhhhhh-hHHHHHHHhcChhhc
Confidence 44556777889999999887653222221 233333332333433 2333 356677777665434
No 331
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.51 E-value=0.043 Score=39.62 Aligned_cols=40 Identities=25% Similarity=0.461 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038852 177 SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLT 218 (851)
Q Consensus 177 ~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li 218 (851)
+|..+..+|...|++++|+++|+++++.+|. |...|..|+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~--~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD--DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--CHHHHHHhh
Confidence 3555666666666666666666666666555 445554443
No 332
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=95.36 E-value=4 Score=48.18 Aligned_cols=94 Identities=9% Similarity=0.087 Sum_probs=45.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHc---C----CHHHHHHHHHHHhh-CCCCC---CHHH
Q 038852 434 RTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITK---G----KVAECAPILTKMGE-KDPKP---DFLI 502 (851)
Q Consensus 434 ~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~---g----~~~~A~~ll~~m~~-~~~~p---d~~~ 502 (851)
...++-+...|++++|+.+|..+.+.+. ....+...|..+.... + +...-..-+..+.+ ....+ ...|
T Consensus 626 ~~vA~~a~~~G~~~~sI~LY~lag~yd~-al~link~LS~~l~~~~~~~~n~erl~~La~~~~~~y~~~~~~~~~~~~~t 704 (835)
T KOG2168|consen 626 LEVASEADEDGLFEDAILLYHLAGDYDK-ALELINKLLSQVLHSPTLGQSNKERLGDLALSMNDIYESNKGDSAKVVVKT 704 (835)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHHHhccCcchhhHHHH
Confidence 3445556677888888888877765431 0111111122222221 1 11111111222222 22222 2335
Q ss_pred HHHHHHHH-----HhcCChHHHHHHHHHHHH
Q 038852 503 YDVVVRGL-----CNEGLFDMSKDIVDQMMK 528 (851)
Q Consensus 503 ~~~ll~a~-----~~~g~~~~A~~~~~~m~~ 528 (851)
+..|+..+ +..|++++|+.+++.+.-
T Consensus 705 ~~lLl~~~~~f~~y~~~~~e~aL~~le~l~L 735 (835)
T KOG2168|consen 705 LSLLLDLVSFFDLYHNGEWEEALSILEHLDL 735 (835)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 55555432 467888888888887763
No 333
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=95.32 E-value=0.37 Score=56.52 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=18.8
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQ 129 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~ 129 (851)
..+...+..++-.|.++.|..+++.
T Consensus 149 p~FW~~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 149 PDFWDYVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHH-T
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4677888888888888888888743
No 334
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.28 E-value=0.47 Score=46.25 Aligned_cols=61 Identities=11% Similarity=0.174 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038852 213 TYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGAD--SLVYNNLISGFLNLGNLEKANELFDELK 273 (851)
Q Consensus 213 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~~~~~Li~~~~~~g~~~~A~~~~~~~~ 273 (851)
.+..++..|++.|++++|++.|.++.+....+. ...+..+|+.+...+++..+...+.++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455555555556666666666555555432221 1334445555555555555555555443
No 335
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.21 E-value=1.4 Score=41.62 Aligned_cols=127 Identities=14% Similarity=0.128 Sum_probs=68.3
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchh---hHHHHHHHHHHcCCH
Q 038852 222 VDAGRIGEAVDLLRDMLSRQLGADS-LVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGV---VNATFMEWWFNQGKD 297 (851)
Q Consensus 222 ~~~g~~~~A~~l~~~m~~~g~~pd~-~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~---~~~~li~~~~~~g~~ 297 (851)
...++.++|+.-|..+.+.|..--. .....+.......|+...|...|+++-.....|... ....-...+...|.|
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 3455666666666666665544221 122223344556666666666666665544333222 111112234456666
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 038852 298 KEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQP 348 (851)
Q Consensus 298 ~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~ 348 (851)
+......+-+...+-..-...-..|..+-.+.|++.+|...|..+......
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~a 199 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQA 199 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccC
Confidence 666666555544443333344556666667777777777777777664333
No 336
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.15 E-value=0.91 Score=42.87 Aligned_cols=128 Identities=12% Similarity=0.081 Sum_probs=75.8
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHH
Q 038852 327 LKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYC 406 (851)
Q Consensus 327 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~ 406 (851)
...++.++|+.-|..+.+.|...- -......++......|+...|+..|+++........+..|.. -..-...+.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~Y----pvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~A-Rlraa~lLv 143 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSY----PVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLA-RLRAAYLLV 143 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcc----hHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHH-HHHHHHHHh
Confidence 456677777777777777654421 223344555666777888888888887754322211111111 111223355
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 038852 407 ENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVES 459 (851)
Q Consensus 407 ~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~ 459 (851)
..|.++.....++-+...+-.-....-..|+-+-.+.|++.+|.++|..+.+.
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 67777777777766654433323344566777777888888888888877764
No 337
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.90 E-value=0.14 Score=53.18 Aligned_cols=96 Identities=13% Similarity=0.086 Sum_probs=64.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038852 143 NAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFV 222 (851)
Q Consensus 143 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~ 222 (851)
.--++-|++.|.|++|+.+|.+.+.... -|.+++..-+.+|.+..+|..|..-.+.++..+.. -+.+|...+.+-.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P--~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~--Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYP--HNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL--YVKAYSRRMQARE 176 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCC--CCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH--HHHHHHHHHHHHH
Confidence 3456677788888888888877665432 26677777777788888887777777777665422 3445555555556
Q ss_pred HcCCHHHHHHHHHHHHhcCC
Q 038852 223 DAGRIGEAVDLLRDMLSRQL 242 (851)
Q Consensus 223 ~~g~~~~A~~l~~~m~~~g~ 242 (851)
..|+..+|.+-++.+++...
T Consensus 177 ~Lg~~~EAKkD~E~vL~LEP 196 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLALEP 196 (536)
T ss_pred HHhhHHHHHHhHHHHHhhCc
Confidence 66677777777777666533
No 338
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.77 E-value=2.8 Score=40.66 Aligned_cols=97 Identities=14% Similarity=0.104 Sum_probs=65.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038852 360 NIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDA 439 (851)
Q Consensus 360 ~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~ 439 (851)
..++..+...+++++|+..++.......+..+ ...+-..|.+.....|.+|+|+++++...+.+. .......-+++
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~l--k~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDi 168 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENL--KALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHH--HHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhH
Confidence 34556777888888888888877654333211 122334466677778888888888887664422 23345556778
Q ss_pred HHHcCCHHHHHHHHHHHHHcC
Q 038852 440 YLKVERIDDALELFNRMVESG 460 (851)
Q Consensus 440 ~~~~g~~~~A~~~~~~m~~~~ 460 (851)
+...|+-++|+..|++.++.+
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHcCchHHHHHHHHHHHHcc
Confidence 888888888888888888765
No 339
>PRK09687 putative lyase; Provisional
Probab=94.77 E-value=6.5 Score=41.45 Aligned_cols=59 Identities=12% Similarity=0.085 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHH
Q 038852 210 SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNL----EKANELFDEL 272 (851)
Q Consensus 210 ~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~----~~A~~~~~~~ 272 (851)
|..+....+.++...|. .++...+..+... .|...-...+.++...|+- +++..++..+
T Consensus 36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 44455555556655553 3333333333322 2455555556666666652 3455555544
No 340
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=94.73 E-value=3.9 Score=42.59 Aligned_cols=27 Identities=19% Similarity=0.438 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 038852 355 NSDTFNIMVNECFKHGKFSEAIETFKK 381 (851)
Q Consensus 355 ~~~~~~~L~~~~~~~g~~~~A~~~~~~ 381 (851)
+......++..|.+.|++.+|+..|-.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 667777777777777777777776643
No 341
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.72 E-value=2.8 Score=45.87 Aligned_cols=57 Identities=12% Similarity=0.060 Sum_probs=34.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHH
Q 038852 288 MEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLL-KHEKKEEAQALFEQMLD 344 (851)
Q Consensus 288 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~-~~g~~~~A~~l~~~m~~ 344 (851)
+..+.+.|.+..|+++.+-++..++..|+.....+|+.|+ +.++++--+++++....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 3445666667777777777666666555555555555543 45566666666665443
No 342
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.61 E-value=0.98 Score=42.55 Aligned_cols=54 Identities=24% Similarity=0.336 Sum_probs=29.5
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 038852 151 RAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAP 206 (851)
Q Consensus 151 ~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~ 206 (851)
+.++.+++..+++.+.-..+..+...++..++ ++..|+|++|+.+|+++.+..+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~~ 75 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERAP 75 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccCC
Confidence 45666666666666543333223333333333 5566777777777777655443
No 343
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.60 E-value=0.1 Score=37.63 Aligned_cols=40 Identities=25% Similarity=0.364 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 213 TYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 213 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
+|..++.+|.+.|++++|+++|+++++.... |...|..|+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHhh
Confidence 5667777777777777777777777777655 666665554
No 344
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=4.6 Score=42.16 Aligned_cols=80 Identities=15% Similarity=0.110 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCCC
Q 038852 170 DIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLS----RQLGAD 245 (851)
Q Consensus 170 ~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~----~g~~pd 245 (851)
.+.-|...++.|... +..++++--+..+++.+..|..--..++...+..|++.||.+.|++.+++..+ .|.+.|
T Consensus 65 ~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiD 142 (393)
T KOG0687|consen 65 VIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKID 142 (393)
T ss_pred ceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchh
Confidence 344455555554432 22233333334444433333322345677778888888888888877766544 455656
Q ss_pred HHHHHH
Q 038852 246 SLVYNN 251 (851)
Q Consensus 246 ~~~~~~ 251 (851)
++.+..
T Consensus 143 Vvf~~i 148 (393)
T KOG0687|consen 143 VVFYKI 148 (393)
T ss_pred hHHHHH
Confidence 655544
No 345
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=94.58 E-value=3.2 Score=48.74 Aligned_cols=29 Identities=14% Similarity=0.088 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 430 VTTFRTLIDAYLKVERIDDALELFNRMVE 458 (851)
Q Consensus 430 ~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~ 458 (851)
......++..|.+.|-.+.|.++++.+-.
T Consensus 405 ~~~~~k~l~iC~~~~L~~~a~~I~~~~~~ 433 (566)
T PF07575_consen 405 NDDAEKLLEICAELGLEDVAREICKILGQ 433 (566)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34445566666666666666666665544
No 346
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.53 E-value=5.7 Score=42.92 Aligned_cols=135 Identities=10% Similarity=0.097 Sum_probs=77.7
Q ss_pred hHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCCHHH
Q 038852 372 FSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLK---VERIDD 448 (851)
Q Consensus 372 ~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~---~g~~~~ 448 (851)
.+.-+.+|+++++..+. +...+..++..+.+..+.++..+.+++++.... -+...|...++.... .-.+++
T Consensus 47 ~E~klsilerAL~~np~-----~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~-~~~~LW~~yL~~~q~~~~~f~v~~ 120 (321)
T PF08424_consen 47 AERKLSILERALKHNPD-----SERLLLGYLEEGEKVWDSEKLAKKWEELLFKNP-GSPELWREYLDFRQSNFASFTVSD 120 (321)
T ss_pred HHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHhccCcHHH
Confidence 34556667776665443 667777777777777777777788888776522 256677777665544 234666
Q ss_pred HHHHHHHHHHcCCccchhHHHHHHHHHHHc-CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038852 449 ALELFNRMVESGLRVVVSFGTKVFNELITK-GKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMM 527 (851)
Q Consensus 449 A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~-g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~ 527 (851)
...+|.+.+.. |....... ........+-..| ..++..+...+..+|..+.|+.++.-++
T Consensus 121 ~~~~y~~~l~~-----------L~~~~~~~~~~~~~~~~~e~~~--------l~v~~r~~~fl~~aG~~E~Ava~~Qa~l 181 (321)
T PF08424_consen 121 VRDVYEKCLRA-----------LSRRRSGRMTSHPDLPELEEFM--------LYVFLRLCRFLRQAGYTERAVALWQALL 181 (321)
T ss_pred HHHHHHHHHHH-----------HHHhhccccccccchhhHHHHH--------HHHHHHHHHHHHHCCchHHHHHHHHHHH
Confidence 66666666542 10000000 0000000011111 1133334455677899999999999999
Q ss_pred HcCC
Q 038852 528 KYGV 531 (851)
Q Consensus 528 ~~g~ 531 (851)
+.++
T Consensus 182 E~n~ 185 (321)
T PF08424_consen 182 EFNF 185 (321)
T ss_pred HHHc
Confidence 8765
No 347
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.52 E-value=0.84 Score=44.48 Aligned_cols=95 Identities=13% Similarity=0.122 Sum_probs=43.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHH----
Q 038852 286 TFMEWWFNQGKDKEAMQSYKSLMERNFRM--TPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTF---- 359 (851)
Q Consensus 286 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~--~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~---- 359 (851)
.+++.|++.|+.++|++.|.++.+....+ -...+-.+|......+++..+...+.++...-...+ +....
T Consensus 41 ~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~----d~~~~nrlk 116 (177)
T PF10602_consen 41 DLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGG----DWERRNRLK 116 (177)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc----hHHHHHHHH
Confidence 33344444444444444444443332211 112344455566666666666666555543211111 11111
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhcc
Q 038852 360 NIMVNECFKHGKFSEAIETFKKAGT 384 (851)
Q Consensus 360 ~~L~~~~~~~g~~~~A~~~~~~~~~ 384 (851)
..-+..+...+++.+|-+.|-.+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 1222334456788888877776643
No 348
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.51 E-value=0.23 Score=51.63 Aligned_cols=90 Identities=13% Similarity=0.113 Sum_probs=42.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHH
Q 038852 220 GFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKE 299 (851)
Q Consensus 220 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~ 299 (851)
-|.+.|+|++|+++|.+.+..... |.+++...+.+|.+...+..|+.-...++..+.. -...|..-+.+-...|+.++
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhhHHH
Confidence 445555555555555555544222 4555555555555555555555544444433211 12233333333344445555
Q ss_pred HHHHHHHHHHhc
Q 038852 300 AMQSYKSLMERN 311 (851)
Q Consensus 300 A~~l~~~~~~~~ 311 (851)
|.+-++.+++..
T Consensus 184 AKkD~E~vL~LE 195 (536)
T KOG4648|consen 184 AKKDCETVLALE 195 (536)
T ss_pred HHHhHHHHHhhC
Confidence 555555544443
No 349
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.46 E-value=0.52 Score=52.70 Aligned_cols=99 Identities=15% Similarity=0.160 Sum_probs=50.3
Q ss_pred HcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 038852 368 KHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERID 447 (851)
Q Consensus 368 ~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~ 447 (851)
+.|+++.|.++..++. +..-|..|.++....+++..|.+.|.+..+ |..|+-.+...|+-+
T Consensus 649 ~lgrl~iA~~la~e~~----------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~ 709 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN----------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAE 709 (794)
T ss_pred hcCcHHHHHHHHHhhc----------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChh
Confidence 5566666665555442 334466666666666666666666554432 334444455555544
Q ss_pred HHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038852 448 DALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKM 491 (851)
Q Consensus 448 ~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m 491 (851)
.-..+-....+.|. . +..+.+|...|+++++++++.+-
T Consensus 710 ~l~~la~~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 710 GLAVLASLAKKQGK-N-----NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHHHhhcc-c-----chHHHHHHHcCCHHHHHHHHHhc
Confidence 44444444443331 1 22334555566666666655443
No 350
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.44 E-value=0.46 Score=53.12 Aligned_cols=152 Identities=16% Similarity=0.116 Sum_probs=87.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChH
Q 038852 113 SLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVD 192 (851)
Q Consensus 113 ~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~ 192 (851)
.+.-.|+++.|..++..+- ....+.+++.+.+.|..++|+++- +|..- -.....+.|+++
T Consensus 595 t~vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s----------~D~d~---rFelal~lgrl~ 654 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS----------TDPDQ---RFELALKLGRLD 654 (794)
T ss_pred HHhhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC----------CChhh---hhhhhhhcCcHH
Confidence 4455566666655443321 234456666666777777776553 22211 122345667777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038852 193 EGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDEL 272 (851)
Q Consensus 193 ~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~ 272 (851)
.|.++..+.. +..-|..|.++....+++..|.++|.++.. |..|+-++...|+.+....+-...
T Consensus 655 iA~~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~ 718 (794)
T KOG0276|consen 655 IAFDLAVEAN-------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLA 718 (794)
T ss_pred HHHHHHHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHH
Confidence 7777665542 455678888888888888888887776543 445666666667666555554444
Q ss_pred HhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHH
Q 038852 273 KQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKS 306 (851)
Q Consensus 273 ~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 306 (851)
.+.|.. +....+|...|+++++++++.+
T Consensus 719 ~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 719 KKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred Hhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 444322 2233445666777666666544
No 351
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.37 E-value=1.5 Score=45.51 Aligned_cols=79 Identities=18% Similarity=0.264 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCCHHHH
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLS-----RQLGADSLVY 249 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~~~ 249 (851)
..++..++..+..+|+++.+++.+++++..++. +...|..|+.+|.+.|+...|+..|+.+.+ .|+.|-..+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~--~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY--DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 345777888888888899999999988888877 888888999999999998888888887765 4666666555
Q ss_pred HHHHHH
Q 038852 250 NNLISG 255 (851)
Q Consensus 250 ~~Li~~ 255 (851)
......
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 444443
No 352
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=94.25 E-value=5.3 Score=47.24 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=18.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 038852 251 NLISGFLNLGNLEKANELFDELKQ 274 (851)
Q Consensus 251 ~Li~~~~~~g~~~~A~~~~~~~~~ 274 (851)
.++..+.++|+.+.|.+++++...
T Consensus 330 ~~vyy~lR~G~lk~A~~~l~e~~~ 353 (835)
T KOG2168|consen 330 PLVYYLLRCGDLKAASQFLNENKD 353 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhh
Confidence 466777888888888888877654
No 353
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.05 E-value=1.3 Score=42.99 Aligned_cols=92 Identities=20% Similarity=0.267 Sum_probs=38.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcC
Q 038852 218 TKGFVDAGRIGEAVDLLRDMLSRQLGAD--SLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQG 295 (851)
Q Consensus 218 i~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g 295 (851)
...+...+++++|+..++..+..-.+-+ ..+--.|.+.....|.+|+|+.+++.....+. .......-.+++...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcC
Confidence 3444445555555555544443211000 01112233444445555555555544443322 1222333344455555
Q ss_pred CHHHHHHHHHHHHHhc
Q 038852 296 KDKEAMQSYKSLMERN 311 (851)
Q Consensus 296 ~~~~A~~l~~~~~~~~ 311 (851)
+-++|+.-|+..+..+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 5555555555555443
No 354
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=94.04 E-value=10 Score=40.63 Aligned_cols=15 Identities=13% Similarity=-0.121 Sum_probs=10.3
Q ss_pred CHHHHHHHHHhhhhc
Q 038852 550 RGEEIERVLNADRWG 564 (851)
Q Consensus 550 ~~~eA~~ll~~~~~~ 564 (851)
++-+|+++|+++...
T Consensus 353 ~l~~Al~lY~kLm~~ 367 (462)
T KOG2199|consen 353 KLLDALRLYNKLMNE 367 (462)
T ss_pred HHHHHHHHHHHHHhh
Confidence 456778888886543
No 355
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.95 E-value=8.6 Score=39.51 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=61.2
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHH
Q 038852 199 RRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLS----RQLGADSLVY-NNLISGFLNLGNLEKANELFDELK 273 (851)
Q Consensus 199 ~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~----~g~~pd~~~~-~~Li~~~~~~g~~~~A~~~~~~~~ 273 (851)
++..+.++..--..+|..++..|+..++.+.+.+++++..+ .|.+.|+... ..|+-.|....-+++-++..+.|.
T Consensus 103 ~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~i 182 (412)
T COG5187 103 REKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDII 182 (412)
T ss_pred HHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 33333343433456788888888888888888777665544 4555444322 123333433444566677777777
Q ss_pred hcCCccchhh-HHHH-HHHHHHcCCHHHHHHHHHHHHH
Q 038852 274 QRCLVYDGVV-NATF-MEWWFNQGKDKEAMQSYKSLME 309 (851)
Q Consensus 274 ~~~~~~d~~~-~~~l-i~~~~~~g~~~~A~~l~~~~~~ 309 (851)
++|...+..- |... ...+....++.+|-.+|.+++.
T Consensus 183 EkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 183 EKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 7766533221 1111 1123344567777777766654
No 356
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=13 Score=40.24 Aligned_cols=126 Identities=14% Similarity=0.117 Sum_probs=62.0
Q ss_pred hcCCHHHHHHHHHHHHhcCCccchh--------hHHHHHHHHHHcCCHHHHHHHHHHHHHh-----cCCCCHHHHHHHHH
Q 038852 258 NLGNLEKANELFDELKQRCLVYDGV--------VNATFMEWWFNQGKDKEAMQSYKSLMER-----NFRMTPATCNTLLE 324 (851)
Q Consensus 258 ~~g~~~~A~~~~~~~~~~~~~~d~~--------~~~~li~~~~~~g~~~~A~~l~~~~~~~-----~~~~~~~~~~~Li~ 324 (851)
..+++++|.++-+..+..-...+.. +|..+...|...|+.......+...+.. +..--....|.|++
T Consensus 138 d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr 217 (493)
T KOG2581|consen 138 DQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLR 217 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHH
Confidence 3466666666665544321111222 2333333444455555544444443321 11122345666677
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCCCccCH--HHHHHHHHHHHHcCChHHHHHHHHHhccCCC
Q 038852 325 VLLKHEKKEEAQALFEQMLDNHQPPNIQAVNS--DTFNIMVNECFKHGKFSEAIETFKKAGTHPK 387 (851)
Q Consensus 325 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~--~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~ 387 (851)
.|...+.++.|.++..+.. .|+...-+. ..+..++....-.+++..|.++|-.+..+.+
T Consensus 218 ~yL~n~lydqa~~lvsK~~----~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 218 NYLHNKLYDQADKLVSKSV----YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred HHhhhHHHHHHHHHhhccc----CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence 7777777777776655443 232111111 1223445555566677777777777665543
No 357
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.57 E-value=2.2 Score=40.27 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=8.4
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 038852 405 YCENEMLEEAEKLLREIS 422 (851)
Q Consensus 405 ~~~~g~~~~A~~l~~~m~ 422 (851)
+...|++++|+.+|+++.
T Consensus 54 ~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHhCCHHHHHHHHHHHh
Confidence 334444444444444443
No 358
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.57 E-value=13 Score=40.27 Aligned_cols=167 Identities=12% Similarity=0.087 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----CCCCCCcc
Q 038852 282 VVNATFMEWWFNQGKDKEAMQSYKSLMERN--FRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNH-----QPPNIQAV 354 (851)
Q Consensus 282 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~--~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~-----~~p~~~~~ 354 (851)
..+..+...|..+|+++.|++.|-++.+-. .+.....|..+|..-...|+|.....+..++...- .... ...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~-v~~ 229 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQE-VPA 229 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHh-cCc
Confidence 344555666666777777777766644321 11122345556666666677776666666665431 0000 000
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCC--CCCcc-CHHHHHHHHHHHHhcCCHHHHHH-----HHHHHHhCCC
Q 038852 355 NSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKS--KPFAM-DVAGYNNIIARYCENEMLEEAEK-----LLREISTKSL 426 (851)
Q Consensus 355 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~-d~~~~~~li~~~~~~g~~~~A~~-----l~~~m~~~g~ 426 (851)
....+..|+.. ..++++.|.+.|-.+.....+ .-+.+ |+.+|. .+.+++--++-+--+. .|+.+.+
T Consensus 230 kl~C~agLa~L--~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYg-gLcALAtfdr~~Lk~~vi~n~~Fk~fle--- 303 (466)
T KOG0686|consen 230 KLKCAAGLANL--LLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYG-GLCALATFDRQDLKLNVIKNESFKLFLE--- 303 (466)
T ss_pred chHHHHHHHHH--HHHHHHHHHHHHHhCCCCccCccceecchhhHHHH-hhHhhccCCHHHHHHHHHcchhhhhHHh---
Confidence 22333444443 445888888887766433222 11222 444443 2333332222222112 2222222
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 427 SPDVTTFRTLIDAYLKVERIDDALELFNRMVE 458 (851)
Q Consensus 427 ~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~ 458 (851)
.+...+..|...| .+++...+++++++..
T Consensus 304 -l~Pqlr~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 304 -LEPQLREILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred -cChHHHHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 2444555555554 4568888888877764
No 359
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=93.26 E-value=15 Score=40.13 Aligned_cols=47 Identities=13% Similarity=0.078 Sum_probs=27.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCh
Q 038852 142 CNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKV 191 (851)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~ 191 (851)
-..+|.-|...|+++-|..-+.++ -... -..+....|+.+....++-
T Consensus 53 ~~sii~eyfstgdv~vaa~dl~el-g~se--yhpyfvkrlvsmamdrhdk 99 (645)
T KOG0403|consen 53 AVSIIDEYFSTGDVVVAASDLKEL-GSSE--YHPYFVKRLVSMAMDRHDK 99 (645)
T ss_pred HHHHHHHHccCCCchhhHHHHHHh-cccc--ccHHHHHHHHHHHhhccch
Confidence 357888899999998888777665 1111 1223334455555555443
No 360
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.22 E-value=27 Score=43.04 Aligned_cols=359 Identities=11% Similarity=0.050 Sum_probs=175.3
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHH---HHHHHHHcC---ChhHHHHHHHHHHHcCCCCCCHH
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRP---TVFTCNA---IIAAMYRAK---RYDDAVALFKYFFDQADIVPNIV 176 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~---~~~~~~~---li~~~~~~g---~~~~A~~l~~~~~~~~~~~pd~~ 176 (851)
+...+-.+++....++.|+..++++..+-+.. ....+.. ++.-....| .+++|+.-|+.+.... --..
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 553 (932)
T PRK13184 477 SCLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGV---GAPL 553 (932)
T ss_pred ecccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCC---CCch
Confidence 34445567888889999999999876543211 1122222 222222334 4778888888773221 1223
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038852 177 SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGF 256 (851)
Q Consensus 177 ~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~ 256 (851)
-|..-+-+|-+.|++++-++.+.-++++.+..|.......-+ ..++.+..... ...+|.-++-+.
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~----~~~~~~~~~~~~ 618 (932)
T PRK13184 554 EYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHL-----------VYRLHESLYKH----RREALVFMLLAL 618 (932)
T ss_pred HHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHH-----------HHHHHHHHHHH----HHHHHHHHHHHH
Confidence 355555568889999999999999998887766543221111 11111111111 112222222222
Q ss_pred H---hcCCHHHHHHHHHHHHhcC-------Cccchh-h----HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHH
Q 038852 257 L---NLGNLEKANELFDELKQRC-------LVYDGV-V----NATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNT 321 (851)
Q Consensus 257 ~---~~g~~~~A~~~~~~~~~~~-------~~~d~~-~----~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~ 321 (851)
. +.-...+-+++|+.+..+- +.+... . +..++. .-.|..---.++|+++.+.. +..+...
T Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 693 (932)
T PRK13184 619 WIAPEKISSREEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLS--FWSGFTPFLPELFQRAWDLR---DYRALAD 693 (932)
T ss_pred HhCcccccchHHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHH--HHhcCchhhHHHHHHHhhcc---cHHHHHH
Confidence 1 1112233344554443321 111111 1 111111 12344444455666655542 2244445
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCC-------CccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccC
Q 038852 322 LLEVLLKHEKKEEAQALFEQMLDNHQPPNI-------QAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMD 394 (851)
Q Consensus 322 Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-------~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d 394 (851)
+..+.+..|.++-+.+..+.+.+.-..-+. ...+...|..-+.++....+++++.+.+..+... .-
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 766 (932)
T PRK13184 694 IFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTDPT-------LI 766 (932)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCCHH-------HH
Confidence 555667888887766665555431111000 0001222444455666666777777766554110 01
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHH
Q 038852 395 VAGYNNIIARYCENEMLEEAEKLLREISTKSLSPD--VTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVF 472 (851)
Q Consensus 395 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~ 472 (851)
...+..++.-....++.+....+.+.+...-.... .......+.+|.-..++++|-++++.....-...+......|.
T Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (932)
T PRK13184 767 LYAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLY 846 (932)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHH
Confidence 22233333333334454544455444443321111 2234556777888889999999886655432222333222233
Q ss_pred HH-HHHcCCHHHHHHHHHHHhhC
Q 038852 473 NE-LITKGKVAECAPILTKMGEK 494 (851)
Q Consensus 473 ~~-~~~~g~~~~A~~ll~~m~~~ 494 (851)
.+ ++-.++.+.|..-|....+.
T Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~ 869 (932)
T PRK13184 847 GCYLALTEDREAAKAHFSGCRED 869 (932)
T ss_pred HHHHHhcCchhHHHHHHhhcccc
Confidence 33 34567777777777776644
No 361
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.21 E-value=27 Score=43.02 Aligned_cols=352 Identities=11% Similarity=0.065 Sum_probs=166.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHHcC---CHHHHHHHHHHHHhcCCCCCHHHH
Q 038852 180 NLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHL-------TKGFVDAG---RIGEAVDLLRDMLSRQLGADSLVY 249 (851)
Q Consensus 180 ~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~L-------i~~~~~~g---~~~~A~~l~~~m~~~g~~pd~~~~ 249 (851)
++-+++.....++.|+..|+++...-|. -...|.++ +.-....| .+++|+.-|+.+... +. -.--|
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~ 555 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPG--RKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG-VG-APLEY 555 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCC--cccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC-CC-CchHH
Confidence 4445677778888888888888765433 11222221 11122223 366666666665532 11 22335
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCc-cchhh-HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 038852 250 NNLISGFLNLGNLEKANELFDELKQRCLV-YDGVV-NATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLL 327 (851)
Q Consensus 250 ~~Li~~~~~~g~~~~A~~~~~~~~~~~~~-~d~~~-~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~ 327 (851)
..-+-+|-+.|++++-++.|..+.++-.. |.... -..++ .++.+.+.... ..+|.-|+-++.
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~----~~~~~~~~~~~~ 619 (932)
T PRK13184 556 LGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLV------------YRLHESLYKHR----REALVFMLLALW 619 (932)
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHH------------HHHHHHHHHHH----HHHHHHHHHHHH
Confidence 45555677777777777777766654221 11110 00000 01111111111 123333333222
Q ss_pred h---CCCHHHHHHHHHHHHHcCCCCCCC---ccCHHHH----HHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHH
Q 038852 328 K---HEKKEEAQALFEQMLDNHQPPNIQ---AVNSDTF----NIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAG 397 (851)
Q Consensus 328 ~---~g~~~~A~~l~~~m~~~~~~p~~~---~~~~~~~----~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~ 397 (851)
. .-...+-.++|+.+..+ ..+..+ ......+ ..+..+| -.|..---.++|+++.+.. |..+
T Consensus 620 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------~~~~ 690 (932)
T PRK13184 620 IAPEKISSREEEKFLEILYHK-QQATLFCQLDKTPLQFRSSKMELFLSF-WSGFTPFLPELFQRAWDLR-------DYRA 690 (932)
T ss_pred hCcccccchHHHHHHHHHHhh-ccCCceeeccCchhhhhhhhHHHHHHH-HhcCchhhHHHHHHHhhcc-------cHHH
Confidence 1 11223334455544432 221110 0011111 1111111 2344444556666665432 4555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccch
Q 038852 398 YNNIIARYCENEMLEEAEKLLREISTK----SLSPDV--------TTFRTLIDAYLKVERIDDALELFNRMVESGLRVVV 465 (851)
Q Consensus 398 ~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd~--------~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 465 (851)
...+.-+.+..|.++-+....+.+.+. ...-+. ..|..-+.++....+++++.+.+..... ..-.
T Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 767 (932)
T PRK13184 691 LADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTDP---TLIL 767 (932)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCCH---HHHH
Confidence 566666667889988777766655532 111111 1122224455555566666654433211 1112
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHH
Q 038852 466 SFGTKVFNELITKGKVAECAPILTKMGEKDPKPD--FLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGV-GITPALQDFVR 542 (851)
Q Consensus 466 ~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd--~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~L~ 542 (851)
..+..++.-....++.+....+.+.+.+.-.... .......+.+|.-..++++|-++++..-.... ......+...+
T Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (932)
T PRK13184 768 YAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYG 847 (932)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHH
Confidence 2223233333344555555555555444322211 23445567888889999999999976643222 22233333344
Q ss_pred HHHHhcCCHHHHHHHHHhhhh
Q 038852 543 ETFGKAGRGEEIERVLNADRW 563 (851)
Q Consensus 543 ~~~~~~G~~~eA~~ll~~~~~ 563 (851)
--++-.++-+-|...|...++
T Consensus 848 ~~~~~~~~~~~~~~~~~~~~~ 868 (932)
T PRK13184 848 CYLALTEDREAAKAHFSGCRE 868 (932)
T ss_pred HHHHhcCchhHHHHHHhhccc
Confidence 445667888888888888763
No 362
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.13 E-value=0.12 Score=34.84 Aligned_cols=32 Identities=25% Similarity=0.601 Sum_probs=17.6
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 038852 198 FRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAV 231 (851)
Q Consensus 198 ~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~ 231 (851)
|+++++.+|. |..+|+.|+.+|...|++++|+
T Consensus 2 y~kAie~~P~--n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN--NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC--CHHHHHHHHHHHHHCcCHHhhc
Confidence 4445555544 5555555555555555555554
No 363
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.08 E-value=7.4 Score=40.13 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038852 227 IGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDE 271 (851)
Q Consensus 227 ~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~ 271 (851)
..+|+++|.-++...- ..++-..++.++....|..+|...|..
T Consensus 149 s~KA~ELFayLv~hkg--k~v~~~~~ie~lwpe~D~kka~s~lhT 191 (361)
T COG3947 149 SRKALELFAYLVEHKG--KEVTSWEAIEALWPEKDEKKASSLLHT 191 (361)
T ss_pred hhHHHHHHHHHHHhcC--CcccHhHHHHHHccccchhhHHHHHHH
Confidence 3577788877776532 223344566777777777776665543
No 364
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.00 E-value=1.2 Score=42.69 Aligned_cols=76 Identities=13% Similarity=0.308 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----C-------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038852 191 VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAG----R-------IGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL 259 (851)
Q Consensus 191 ~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g----~-------~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~ 259 (851)
+++|+.-|++++..+|. ...++..++.+|...+ + +++|.+.|+++... +|+..+|..-+.++.
T Consensus 51 iedAisK~eeAL~I~P~--~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~-- 124 (186)
T PF06552_consen 51 IEDAISKFEEALKINPN--KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA-- 124 (186)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH--
Confidence 45566667777776655 4556666666666533 2 45556666666654 567777777666653
Q ss_pred CCHHHHHHHHHHHHhcC
Q 038852 260 GNLEKANELFDELKQRC 276 (851)
Q Consensus 260 g~~~~A~~~~~~~~~~~ 276 (851)
+|-+++.++.+.+
T Consensus 125 ----kap~lh~e~~~~~ 137 (186)
T PF06552_consen 125 ----KAPELHMEIHKQG 137 (186)
T ss_dssp ----THHHHHHHHHHSS
T ss_pred ----hhHHHHHHHHHHH
Confidence 4566666665543
No 365
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.91 E-value=8.7 Score=39.65 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=25.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038852 436 LIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKM 491 (851)
Q Consensus 436 Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m 491 (851)
....|..+|.+.+|..+.++++..+. .+...+..++..|...||--.|.+-++++
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 33445555555555555555554432 22233333444555555544444444443
No 366
>PRK12798 chemotaxis protein; Reviewed
Probab=92.89 E-value=17 Score=39.79 Aligned_cols=195 Identities=11% Similarity=0.051 Sum_probs=95.2
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCCh
Q 038852 294 QGKDKEAMQSYKSLMERNFRMTPATCNTLLEVL-LKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKF 372 (851)
Q Consensus 294 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~-~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~ 372 (851)
.|+.+++.+.+..+...........+..|+.+- ....+..+|+++|+.+.-. .|.- -+.......-+......|+.
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGT-LvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGT-LVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCch-HHHHHHHHHhhHHHHhcCcH
Confidence 455555555555544444444444455555443 3345677777777776542 2210 00223444455566677887
Q ss_pred HHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHH
Q 038852 373 SEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPD--VTTFRTLIDAYLKVERIDDAL 450 (851)
Q Consensus 373 ~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~~~~~Ll~~~~~~g~~~~A~ 450 (851)
++++.+-...........+.-+. +..+..++.+.++-..- ..+.+++.. +.++ ..+|..+...-...|+.+.|.
T Consensus 202 ~rf~~la~~Y~rRF~~S~YA~~F--~~~F~~~~~~~~d~~~~-~~l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~ 277 (421)
T PRK12798 202 DKFEALARNYLRRFRHSPYASQF--AQRFVDLVVRLDDEIRD-ARLVEILSF-MDPERQRELYLRIARAALIDGKTELAR 277 (421)
T ss_pred HHHHHHHHHHHHHhccCchHHHH--HHHHHHHHHhccccccH-HHHHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHH
Confidence 77766555444333332221111 22233333333321111 113333322 2222 457777888888888888888
Q ss_pred HHHHHHHHcCCccchhHHHHHHHHH-----HHcCCHHHHHHHHHHHhhCCCC
Q 038852 451 ELFNRMVESGLRVVVSFGTKVFNEL-----ITKGKVAECAPILTKMGEKDPK 497 (851)
Q Consensus 451 ~~~~~m~~~~~~~~~~~~~~L~~~~-----~~~g~~~~A~~ll~~m~~~~~~ 497 (851)
..-+++.......+.. ...+..| +-..+++++++.+..+-...+.
T Consensus 278 ~As~~A~~L~~~~~~~--~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~ 327 (421)
T PRK12798 278 FASERALKLADPDSAD--AARARLYRGAALVASDDAESALEELSQIDRDKLS 327 (421)
T ss_pred HHHHHHHHhccCCCcc--hHHHHHHHHHHccCcccHHHHHHHHhcCChhhCC
Confidence 8888777653221111 1111222 2244566666666665544333
No 367
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=92.70 E-value=11 Score=39.63 Aligned_cols=102 Identities=16% Similarity=0.220 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCH----
Q 038852 356 SDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIA-RYCENEMLEEAEKLLREISTKSLSPDV---- 430 (851)
Q Consensus 356 ~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~pd~---- 430 (851)
..++...+..||+.||.+.|++.+++..+..-..+.+.|+..+..-+. .|....-+.+-++..+.+.+.|-.-+.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 457788888999999999999999887776666677777766543332 233333345555555566666654332
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 038852 431 TTFRTLIDAYLKVERIDDALELFNRMVES 459 (851)
Q Consensus 431 ~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~ 459 (851)
.+|..| .|....++.+|-.+|-+.+..
T Consensus 184 KvY~Gl--y~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 184 KVYQGL--YCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHH--HHHHHHhHHHHHHHHHHHccc
Confidence 344433 344567888888888877653
No 368
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.55 E-value=6 Score=41.08 Aligned_cols=61 Identities=10% Similarity=0.067 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCccchhhHHHHHHHHHHcCCHHHHHHHHH
Q 038852 245 DSLVYNNLISGFLNLGNLEKANELFDELKQR-CLVYDGVVNATFMEWWFNQGKDKEAMQSYK 305 (851)
Q Consensus 245 d~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~-~~~~d~~~~~~li~~~~~~g~~~~A~~l~~ 305 (851)
+..+...++..+++.+++.+-.++++..... +..-|...|..+++...+.||..-..++.+
T Consensus 201 ~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 201 TRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred ChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 4444445555555555555555555544433 333455555555555555555555444444
No 369
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.24 E-value=15 Score=37.74 Aligned_cols=103 Identities=15% Similarity=0.216 Sum_probs=67.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHhcCC
Q 038852 169 ADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETA---PVGPSSNTYRHL---TKGFVDAGRIGEAVDLLRDMLSRQL 242 (851)
Q Consensus 169 ~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~---~~~p~~~~~~~L---i~~~~~~g~~~~A~~l~~~m~~~g~ 242 (851)
+|...-..+|..++..|+..+|.+.+.+.+++..+.. +.+.| ++... +-.|....-.++-++..+.|+++|.
T Consensus 109 ngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiD--v~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGg 186 (412)
T COG5187 109 NGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKID--VFLCKIRLGLIYGDRKVVEESLEVADDIIEKGG 186 (412)
T ss_pred ccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchh--hHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 3333446789999999999999999999888876643 23233 33333 3344444557888899999999886
Q ss_pred CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038852 243 GADS----LVYNNLISGFLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 243 ~pd~----~~~~~Li~~~~~~g~~~~A~~~~~~~~~~ 275 (851)
.-+. .+|.. -.+....++.+|-.+|.+.+..
T Consensus 187 DWeRrNRyK~Y~G--i~~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 187 DWERRNRYKVYKG--IFKMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred CHHhhhhHHHHHH--HHHHHHHhhHHHHHHHHHHhcc
Confidence 5332 23322 2334456788888888777654
No 370
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.17 E-value=4.1 Score=37.81 Aligned_cols=51 Identities=14% Similarity=0.246 Sum_probs=25.2
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 038852 152 AKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIET 204 (851)
Q Consensus 152 ~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~ 204 (851)
.++.+++..+++.+.-..+-.+...++...+ ++..|++++|+.+|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 5556666666655533222222333333332 45556666666666665543
No 371
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=92.16 E-value=20 Score=38.73 Aligned_cols=90 Identities=14% Similarity=0.236 Sum_probs=57.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038852 360 NIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNI------------IARYCENEMLEEAEKLLREISTKSLS 427 (851)
Q Consensus 360 ~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~ 427 (851)
..|...+...|++++|..++.++ -+.||..+ ++.|...+|+-.|--+-+++..+-+.
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el-----------~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~ 203 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCEL-----------QVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFE 203 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhc-----------chhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcC
Confidence 45666777788888888877766 23333322 45566677777777666666544332
Q ss_pred -CC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 038852 428 -PD-----VTTFRTLIDAYLKVERIDDALELFNRMVESG 460 (851)
Q Consensus 428 -pd-----~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~ 460 (851)
+| ...|+.++......+.+-.+.+.|+.+.+.+
T Consensus 204 ~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~ 242 (439)
T KOG1498|consen 204 KPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTG 242 (439)
T ss_pred CccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhccc
Confidence 23 2346667777777777777777777776643
No 372
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=92.10 E-value=18 Score=38.21 Aligned_cols=162 Identities=10% Similarity=0.004 Sum_probs=72.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH----hcCCccc-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhc----CCCCHHHHHH
Q 038852 251 NLISGFLNLGNLEKANELFDELK----QRCLVYD-GVVNATFMEWWFNQGKDKEAMQSYKSLMERN----FRMTPATCNT 321 (851)
Q Consensus 251 ~Li~~~~~~g~~~~A~~~~~~~~----~~~~~~d-~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~----~~~~~~~~~~ 321 (851)
.|+..|...+++.+|+.+...+. +.+-+.. +.++..=-.+|....+..+|...+..+.... +.|-...-.-
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lD 212 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLD 212 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHH
Confidence 46777778888877776654433 2222111 1122222345666666666666665544321 1111000001
Q ss_pred HHH--HHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHH---HHHHHHHHHHHcCChHHHHHHHHH--hccCCCCCCCccC
Q 038852 322 LLE--VLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSD---TFNIMVNECFKHGKFSEAIETFKK--AGTHPKSKPFAMD 394 (851)
Q Consensus 322 Li~--~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~---~~~~L~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~d 394 (851)
|.. .++...++.-|..+|-++.+.-..-+. +.. ....|+.+-...+..++.-.++.. .....+ ++
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEgf~s~~~---~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g-----~~ 284 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEGFDSLDD---DVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAG-----RD 284 (411)
T ss_pred HhccceeecccccchHHHHHHHHHccccccCC---cHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccC-----cc
Confidence 111 123336777777777777653211111 112 222233333345555555444432 111111 25
Q ss_pred HHHHHHHHHHHHh--cCCHHHHHHHHHH
Q 038852 395 VAGYNNIIARYCE--NEMLEEAEKLLRE 420 (851)
Q Consensus 395 ~~~~~~li~~~~~--~g~~~~A~~l~~~ 420 (851)
.....++..++.+ ..+|+.|+.-|+.
T Consensus 285 i~AmkavAeA~~nRSLkdF~~AL~~yk~ 312 (411)
T KOG1463|consen 285 IDAMKAVAEAFGNRSLKDFEKALADYKK 312 (411)
T ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhHH
Confidence 5556666666544 2345555555443
No 373
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.10 E-value=8.7 Score=41.41 Aligned_cols=130 Identities=12% Similarity=0.077 Sum_probs=80.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH--------HHHHHHHHcCChhHHHHHHHHHHHcCCCCCC----HHHHHH
Q 038852 113 SLIRAGDLDAASYLARQAVFSRIRPTVFTCN--------AIIAAMYRAKRYDDAVALFKYFFDQADIVPN----IVSYNN 180 (851)
Q Consensus 113 ~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~--------~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd----~~~~~~ 180 (851)
.+....++.+|..+-+..+..-..-|..+++ .+-.+|-..|+...-..+|...++...+.-| .+..|.
T Consensus 135 fl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~ 214 (493)
T KOG2581|consen 135 FLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINL 214 (493)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHH
Confidence 3444578888888877765443223333332 2333344567877777777776665444433 456788
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 038852 181 LINTYCDEGKVDEGMNVFRRIIETAPVGPSS--NTYRHLTKGFVDAGRIGEAVDLLRDMLSRQL 242 (851)
Q Consensus 181 Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~--~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~ 242 (851)
|++.|...+.++.|.++..+..--....-+. ..+..+++..+-.+++..|.+.|-.++....
T Consensus 215 LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 215 LLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred HHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence 8899999999999998887663111010011 1223345555667899999999999887644
No 374
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.01 E-value=2 Score=44.69 Aligned_cols=61 Identities=20% Similarity=0.370 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038852 213 TYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQ 274 (851)
Q Consensus 213 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~ 274 (851)
++..++..+...|+++.+.+.+++++..... |...|..++.+|.+.|+...|+..|+.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 5666777777777777777777777777555 677777777777777777777777776654
No 375
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.99 E-value=19 Score=38.34 Aligned_cols=89 Identities=12% Similarity=0.165 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---CHHHH
Q 038852 173 PNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGA---DSLVY 249 (851)
Q Consensus 173 pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~~~ 249 (851)
|+..+...++.-|....+.+...-+-+.+. ...+.+..++.+.+.....+++..+++..-..- =....
T Consensus 73 ~~~~~li~~~~~FV~~~n~eqlr~as~~f~---------~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~qlT~~H 143 (422)
T KOG2582|consen 73 PDPETLIELLNDFVDENNGEQLRLASEIFF---------PLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNGQLTSIH 143 (422)
T ss_pred CCHHHHHHHHHHHHHhcChHHHhhHHHHHH---------HHHHHHHHHHHhcCCccccchHHHHHHHHhccCccchhhhH
Confidence 455555555555555554332222111111 134555666666666555555554444321110 11334
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 038852 250 NNLISGFLNLGNLEKANELFD 270 (851)
Q Consensus 250 ~~Li~~~~~~g~~~~A~~~~~ 270 (851)
..++..|.+.+++..++..++
T Consensus 144 ~~l~~~~L~ak~y~~~~p~ld 164 (422)
T KOG2582|consen 144 ADLLQLCLEAKDYASVLPYLD 164 (422)
T ss_pred HHHHHHHHHhhcccccCCccc
Confidence 456666667777666655544
No 376
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=91.91 E-value=25 Score=39.49 Aligned_cols=14 Identities=14% Similarity=0.313 Sum_probs=7.0
Q ss_pred CHHHHHHHHHHHHh
Q 038852 315 TPATCNTLLEVLLK 328 (851)
Q Consensus 315 ~~~~~~~Li~~~~~ 328 (851)
|..-++.++...+.
T Consensus 102 ~~~~~~~~l~~~~~ 115 (757)
T KOG4368|consen 102 DMNEFDNLLQPIID 115 (757)
T ss_pred CHHHHHHHHHHHHH
Confidence 44455555555443
No 377
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=91.76 E-value=1.8 Score=43.22 Aligned_cols=117 Identities=15% Similarity=0.135 Sum_probs=72.9
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 038852 149 MYRAKRYDDAVALFKYFFDQADIVPNI-VSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRI 227 (851)
Q Consensus 149 ~~~~g~~~~A~~l~~~~~~~~~~~pd~-~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~ 227 (851)
|....+|++|+..|.+++.. .|++ ..|..-+.++.+..+++.+..--.++++..+. .+.....|..++.....+
T Consensus 20 ~f~~k~y~~ai~~y~raI~~---nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N--~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI---NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN--LVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHhc---CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH--HHHHHHHHHHHHHhhccc
Confidence 44566788888888777664 3444 45667777788888888888877777776544 444555666677777788
Q ss_pred HHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 228 GEAVDLLRDMLSRQ----LGADSLVYNNLISGFLNLGNLEKANELFD 270 (851)
Q Consensus 228 ~~A~~l~~~m~~~g----~~pd~~~~~~Li~~~~~~g~~~~A~~~~~ 270 (851)
++|+..+.++...+ +.+-...+..|..+-.+.=...+..++..
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 88888887774432 23333445555444444334444444433
No 378
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.70 E-value=9.8 Score=36.41 Aligned_cols=100 Identities=18% Similarity=0.290 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHH-cCChHHHHHHHH
Q 038852 302 QSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFK-HGKFSEAIETFK 380 (851)
Q Consensus 302 ~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~-~g~~~~A~~~~~ 380 (851)
++++.+.+.++.++...+..++..+.+.|++.....+ +..++-+| +..+-..|+..-.. ..-..-|++++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~D----Sk~lA~~LLs~~~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPD----SKPLACQLLSLGNQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCC----cHHHHHHHHHhHccChHHHHHHHHHHH
Confidence 4455555666777777777777777777776544333 33334442 22222222111100 001333444444
Q ss_pred HhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038852 381 KAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREI 421 (851)
Q Consensus 381 ~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 421 (851)
++.. .+..+++.+...|++-+|+++.+..
T Consensus 87 RL~~------------~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 87 RLGT------------AYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred Hhhh------------hHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 4421 1455666666777777777776654
No 379
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.68 E-value=9 Score=38.51 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=44.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 038852 178 YNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSR 240 (851)
Q Consensus 178 ~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 240 (851)
+.....++...|++-++++...++++..+. |+.+|..-+++.+..=+.++|.+-|..+++.
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~--nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPG--NVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 444555666677888888888888777655 7777777777777777777888777777776
No 380
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=91.60 E-value=17 Score=37.76 Aligned_cols=140 Identities=12% Similarity=0.084 Sum_probs=88.1
Q ss_pred CCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHh-cCCccchhhHHHHHHHHHHcCCHHHH
Q 038852 225 GRIGEAVDLLRDMLS-RQLGADSLVYNNLISGFLN-LG-NLEKANELFDELKQ-RCLVYDGVVNATFMEWWFNQGKDKEA 300 (851)
Q Consensus 225 g~~~~A~~l~~~m~~-~g~~pd~~~~~~Li~~~~~-~g-~~~~A~~~~~~~~~-~~~~~d~~~~~~li~~~~~~g~~~~A 300 (851)
..+.+|+.+|+..-. ..+--|..+...|++.... .+ ....-.++.+.+.. .+...+..+...+++.+++.+++.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 345667777762211 1233366666666666655 22 22222333333332 23556778888889999999999999
Q ss_pred HHHHHHHHHh-cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-----HcCCCCCCCccCHHHHHHHHHHHHHc
Q 038852 301 MQSYKSLMER-NFRMTPATCNTLLEVLLKHEKKEEAQALFEQML-----DNHQPPNIQAVNSDTFNIMVNECFKH 369 (851)
Q Consensus 301 ~~l~~~~~~~-~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~-----~~~~~p~~~~~~~~~~~~L~~~~~~~ 369 (851)
.++++..... +...|...|..+|+.....|+..-..++.++-. +.++.- +...-..|-..+.+.
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v-----~~~L~~~L~~LF~~v 291 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDV-----TDELRSQLSELFKKV 291 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcC-----CHHHHHHHHHHHHhc
Confidence 9998887765 666777889999999999999877766665421 223332 666666666655443
No 381
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.59 E-value=10 Score=36.33 Aligned_cols=133 Identities=12% Similarity=0.168 Sum_probs=71.7
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 038852 126 LARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETA 205 (851)
Q Consensus 126 l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~ 205 (851)
.++.+...++.++...+..++..+.+.|++..-..++.- ++-+|....-..+- ...+.+..+..+--.|+++-
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~-----~Vi~DSk~lA~~LL--s~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY-----HVIPDSKPLACQLL--SLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh-----cccCCcHHHHHHHH--HhHccChHHHHHHHHHHHHh
Confidence 344445566777777888888888888877665555442 23334332222221 11223344444444444432
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038852 206 PVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQ 274 (851)
Q Consensus 206 ~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~ 274 (851)
+. .+..+++++...|++-+|+++.+..... +......++.+..+.+|...-..+|+-..+
T Consensus 89 ~~-----~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 89 GT-----AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hh-----hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 4566677777888888888777665332 222233455555555655544444444443
No 382
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=91.46 E-value=9 Score=42.96 Aligned_cols=63 Identities=11% Similarity=0.140 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHcCCHHHHH-HHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038852 283 VNATFMEWWFNQGKDKEAM-QSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDN 345 (851)
Q Consensus 283 ~~~~li~~~~~~g~~~~A~-~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 345 (851)
+.+.++......+.-++.. ++++.+.+.++.....-|..+++++...++.+.|..+++++.+.
T Consensus 174 i~~ylL~Lait~v~~~~fr~~ilr~l~~~~~~~~~pdyf~v~k~vv~LnDa~~a~~L~~kL~~e 237 (926)
T COG5116 174 IINYLLDLAITLVEEEGFRKEILRMLAEIGPGKPKPDYFYVIKAVVYLNDAEKAKALIEKLVKE 237 (926)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEeEEEEEeccHHHHHHHHHHHHhh
Confidence 4444444444443333322 33333444433221122444667777777888888888877664
No 383
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=91.27 E-value=2.4 Score=42.38 Aligned_cols=120 Identities=14% Similarity=0.143 Sum_probs=60.6
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcC
Q 038852 291 WFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHG 370 (851)
Q Consensus 291 ~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g 370 (851)
|....+++.|+..|.+.+..++.. ...|..-+.++.+..+++.+..-..++++ +.|+ .......++..+....
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~-~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N----~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTV-ASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPN----LVKAHYFLGQWLLQSK 92 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCc-chhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChH----HHHHHHHHHHHHHhhc
Confidence 344455555666555555544321 13344455556666666666665555555 3332 2344455555666666
Q ss_pred ChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHH
Q 038852 371 KFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKL 417 (851)
Q Consensus 371 ~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l 417 (851)
.+++|+..+.++........+.+...++..|..+-...-...+..++
T Consensus 93 ~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri 139 (284)
T KOG4642|consen 93 GYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRI 139 (284)
T ss_pred cccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHH
Confidence 66666666666644434444444444455554443333333333333
No 384
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.23 E-value=0.45 Score=32.53 Aligned_cols=24 Identities=21% Similarity=0.472 Sum_probs=12.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 038852 178 YNNLINTYCDEGKVDEGMNVFRRI 201 (851)
Q Consensus 178 ~~~Li~~~~~~g~~~~A~~l~~~~ 201 (851)
|+.|+.+|.+.|++++|+++|+++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555555555555555555553
No 385
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.18 E-value=1.9 Score=41.28 Aligned_cols=67 Identities=9% Similarity=0.139 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 038852 191 VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDA----------GRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLG 260 (851)
Q Consensus 191 ~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~----------g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g 260 (851)
++.|++.++.....+|. |...++.-+.++... ..+++|+.-|++++..++. ...++..++.+|...+
T Consensus 7 FE~ark~aea~y~~nP~--DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~-~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL--DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN-KHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH--hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHH
Confidence 45666666666666655 555555444444332 2345666666677766554 4567777777776543
No 386
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.13 E-value=0.26 Score=33.27 Aligned_cols=32 Identities=28% Similarity=0.442 Sum_probs=23.5
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038852 234 LRDMLSRQLGADSLVYNNLISGFLNLGNLEKAN 266 (851)
Q Consensus 234 ~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~ 266 (851)
|+++++..+. |..+|+.|+.+|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 5566666655 7777888888888888887775
No 387
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=91.03 E-value=5.1 Score=41.42 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCC-ccCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038852 357 DTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPF-AMDVAGYNNIIARYCENEMLEEAEKLLREI 421 (851)
Q Consensus 357 ~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 421 (851)
.....|+..|.+.|++++|+++|+.+.......+. .+...+...+..++.+.|+.++.+.+.-++
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34556777788888888888888776433322221 112223333444444555555544444333
No 388
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.99 E-value=0.63 Score=31.07 Aligned_cols=29 Identities=31% Similarity=0.587 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 038852 177 SYNNLINTYCDEGKVDEGMNVFRRIIETA 205 (851)
Q Consensus 177 ~~~~Li~~~~~~g~~~~A~~l~~~~~~~~ 205 (851)
+|..++.+|...|++++|++.|+++++.+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 45555555555555555555555555543
No 389
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=90.92 E-value=36 Score=39.31 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHH
Q 038852 141 TCNAIIAAMYRAKRYDDAVALFKYF 165 (851)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~l~~~~ 165 (851)
....++..+.+.+--.+|+.++-++
T Consensus 180 l~~~iV~f~mkHNAE~eAiDlL~Ev 204 (878)
T KOG2005|consen 180 LVQEIVPFHMKHNAEFEAIDLLMEV 204 (878)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHh
Confidence 3444555556666666777777665
No 390
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=90.79 E-value=6.9 Score=42.90 Aligned_cols=58 Identities=7% Similarity=-0.183 Sum_probs=37.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHH-HcCCHHHHHHHHHHHhh
Q 038852 436 LIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELI-TKGKVAECAPILTKMGE 493 (851)
Q Consensus 436 Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~-~~g~~~~A~~ll~~m~~ 493 (851)
.+..+.+.|.+..|+++.+-+...++..|......+++.|+ +.++++--+++++....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 34556677888888888888877776644444344555443 56667777777776554
No 391
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.65 E-value=9.1 Score=35.58 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=27.4
Q ss_pred HcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 038852 187 DEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSR 240 (851)
Q Consensus 187 ~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 240 (851)
..++.+++..+++.+.-..|..+...++... .++..|++++|+.+|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhcc
Confidence 3455666666666655555444443333322 345556666666666655554
No 392
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=90.59 E-value=1.8 Score=44.20 Aligned_cols=82 Identities=12% Similarity=0.126 Sum_probs=41.8
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 038852 231 VDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMER 310 (851)
Q Consensus 231 ~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~ 310 (851)
...++.|.+.|+.-|..+|+.|++.+-+..-.-. .+|.+. ..-|- ..-+-++++++.|...
T Consensus 92 y~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~--nvfQ~~---------------F~HYP--~QQ~C~I~vLeqME~h 152 (406)
T KOG3941|consen 92 YTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ--NVFQKV---------------FLHYP--QQQNCAIKVLEQMEWH 152 (406)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhCcccccccH--HHHHHH---------------HhhCc--hhhhHHHHHHHHHHHc
Confidence 3345566667777677777777666544321110 011111 00011 1123355666666666
Q ss_pred cCCCCHHHHHHHHHHHHhCCC
Q 038852 311 NFRMTPATCNTLLEVLLKHEK 331 (851)
Q Consensus 311 ~~~~~~~~~~~Li~~~~~~g~ 331 (851)
|+-||..+-..|+.++.+.+.
T Consensus 153 GVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 153 GVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred CCCCchHHHHHHHHHhccccc
Confidence 666666666666666655543
No 393
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=90.53 E-value=24 Score=36.73 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHH
Q 038852 210 SSNTYRHLTKGFVDAGRIGEAVDLL 234 (851)
Q Consensus 210 ~~~~~~~Li~~~~~~g~~~~A~~l~ 234 (851)
|......++..|.+.|++.+|...|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4556666777777777777776655
No 394
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=90.41 E-value=1.2 Score=49.35 Aligned_cols=9 Identities=44% Similarity=0.575 Sum_probs=3.6
Q ss_pred cccCCCCCC
Q 038852 788 QWTGQPPSA 796 (851)
Q Consensus 788 ~~~~~~~~~ 796 (851)
...++++-+
T Consensus 303 p~~~q~~~a 311 (742)
T KOG4274|consen 303 PQPQQPPVA 311 (742)
T ss_pred CcccCCccc
Confidence 334444433
No 395
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=90.40 E-value=39 Score=38.97 Aligned_cols=75 Identities=12% Similarity=0.165 Sum_probs=37.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhc
Q 038852 181 LINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADS-LVYNNLISGFLNL 259 (851)
Q Consensus 181 Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~~~~~Li~~~~~~ 259 (851)
++..+.+.+--.+|++++-++...+ ++.-|+...++.+..-++..+...-+.||. ....+....|.+.
T Consensus 184 iV~f~mkHNAE~eAiDlL~Eve~id-----------~l~~~Vd~~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IYlKf 252 (878)
T KOG2005|consen 184 IVPFHMKHNAEFEAIDLLMEVEGID-----------LLLDYVDEHNYQRVCLYLTSCVPLLPGPDDVALLRTALKIYLKF 252 (878)
T ss_pred HHHHHHhccchhHHHHHHHHhhhHh-----------HHHHHhhhhhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHH
Confidence 3444455555566777776653321 233455555666666666666555444442 2333333444444
Q ss_pred CCHHHHH
Q 038852 260 GNLEKAN 266 (851)
Q Consensus 260 g~~~~A~ 266 (851)
+++.+|+
T Consensus 253 ~~~~~al 259 (878)
T KOG2005|consen 253 NEYPRAL 259 (878)
T ss_pred HHhHHHH
Confidence 4444443
No 396
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=90.33 E-value=22 Score=39.21 Aligned_cols=66 Identities=17% Similarity=0.129 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 038852 317 ATCNTLLEVLLKHEKKEEAQALFEQMLD--NHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382 (851)
Q Consensus 317 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~--~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 382 (851)
.+...|++.++-.||+..|+++++.+.- .++-..+......++..++-+|.-.+++.+|++.|..+
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677778888888888888776532 11111122235567788888888888888888888776
No 397
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=90.33 E-value=32 Score=37.86 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 038852 263 EKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERN 311 (851)
Q Consensus 263 ~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~ 311 (851)
-+|.-+++..+.+... +..+...++..|...|-...|.+.|..+.-+.
T Consensus 200 ~~Ai~lLE~~l~~s~~-n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~ 247 (365)
T PF09797_consen 200 LQAIALLEHALKKSPH-NYQLKLLLVRLYSLLGAGSLALEHYESLDIKN 247 (365)
T ss_pred HHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHhcChHH
Confidence 3444444544444332 44445555555555555555555555544333
No 398
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=90.32 E-value=32 Score=37.86 Aligned_cols=55 Identities=25% Similarity=0.227 Sum_probs=38.7
Q ss_pred HHHHHHhCCC---HHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 038852 322 LLEVLLKHEK---KEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382 (851)
Q Consensus 322 Li~~~~~~g~---~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 382 (851)
++..+...++ +-+|+.+++..+..... |...-..++..|...|-.+.|.++|..+
T Consensus 186 Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~------n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 186 LLDLYSKTKDSEYLLQAIALLEHALKKSPH------NYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 4444444444 44677777777765432 6777788888888889888888888877
No 399
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.15 E-value=0.6 Score=31.88 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=10.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 038852 249 YNNLISGFLNLGNLEKANELFDE 271 (851)
Q Consensus 249 ~~~Li~~~~~~g~~~~A~~~~~~ 271 (851)
|..|+.+|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444555555555555555554
No 400
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.07 E-value=32 Score=37.39 Aligned_cols=165 Identities=14% Similarity=0.101 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc--cchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh---------cCCCC
Q 038852 247 LVYNNLISGFLNLGNLEKANELFDELKQRCLV--YDGVVNATFMEWWFNQGKDKEAMQSYKSLMER---------NFRMT 315 (851)
Q Consensus 247 ~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~---------~~~~~ 315 (851)
..+.-+.+.|...|+++.|++.|.++...+.. -....+..+|.+-.-.|+|.....+..++... .+..-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 45667788888888888888888886654322 12445556666666777777777666665543 11222
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCCCccCHHHHHHHHHHHHHcCChHHHHHH-----HHHhccCCCCC
Q 038852 316 PATCNTLLEVLLKHEKKEEAQALFEQMLDNHQP-PNIQAVNSDTFNIMVNECFKHGKFSEAIET-----FKKAGTHPKSK 389 (851)
Q Consensus 316 ~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~-p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~-----~~~~~~~~~~~ 389 (851)
...+..|...+ .++++.|.+.|-........ +.+......+....+.++.--++-+--+.+ |+...+
T Consensus 231 l~C~agLa~L~--lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~fle----- 303 (466)
T KOG0686|consen 231 LKCAAGLANLL--LKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLE----- 303 (466)
T ss_pred hHHHHHHHHHH--HHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHh-----
Confidence 23444444443 44788888777665433222 122211222333333333333322222222 222221
Q ss_pred CCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038852 390 PFAMDVAGYNNIIARYCENEMLEEAEKLLREIST 423 (851)
Q Consensus 390 ~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 423 (851)
.+...+..|...| .+++...+++++++..
T Consensus 304 ---l~Pqlr~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 304 ---LEPQLREILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred ---cChHHHHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 1444455555444 5688999999988764
No 401
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=89.99 E-value=18 Score=35.08 Aligned_cols=21 Identities=29% Similarity=0.397 Sum_probs=10.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHH
Q 038852 434 RTLIDAYLKVERIDDALELFN 454 (851)
Q Consensus 434 ~~Ll~~~~~~g~~~~A~~~~~ 454 (851)
|..+..|.+.|.+|.|+.+++
T Consensus 185 n~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 185 NIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHcCCchHHHHHHh
Confidence 444444555555555555444
No 402
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=89.83 E-value=6.9 Score=48.53 Aligned_cols=50 Identities=18% Similarity=0.426 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhc
Q 038852 225 GRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLG--NLEKANELFDELKQR 275 (851)
Q Consensus 225 g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g--~~~~A~~~~~~~~~~ 275 (851)
+++...-+.+.+.++.... ....+..++.+|++.+ ++++|+.+..++.+.
T Consensus 792 ~KVn~ICdair~~l~~~~~-~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 792 SKVNKICDAIRKALEKPKD-KDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred cHHHHHHHHHHHHhccccc-chhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 3444444555444432122 3344566777888877 788888888777765
No 403
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.74 E-value=29 Score=36.40 Aligned_cols=55 Identities=11% Similarity=0.076 Sum_probs=26.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC------CccchhhHHHHHHHHHHcCCHHHHHHHHHH
Q 038852 252 LISGFLNLGNLEKANELFDELKQRC------LVYDGVVNATFMEWWFNQGKDKEAMQSYKS 306 (851)
Q Consensus 252 Li~~~~~~g~~~~A~~~~~~~~~~~------~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 306 (851)
|+..|-+.++|+.|-.++.-+...+ ...-..++..+.+.|.+.++..+|..+..+
T Consensus 109 LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inR 169 (399)
T KOG1497|consen 109 LASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINR 169 (399)
T ss_pred HHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 4445555555555555554332221 111123444455556666665555555544
No 404
>PRK14700 recombination factor protein RarA; Provisional
Probab=89.72 E-value=29 Score=36.55 Aligned_cols=93 Identities=10% Similarity=0.029 Sum_probs=49.8
Q ss_pred HHHHHHH---cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038852 471 VFNELIT---KGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGL-----FDMSKDIVDQMMKYGVGITPALQDFVR 542 (851)
Q Consensus 471 L~~~~~~---~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~-----~~~A~~~~~~m~~~g~~~~~~~~~~L~ 542 (851)
++.++.+ ..|.|.|+-++-+|++.|..|....-..++.++...|. ...|...++.+...|++.-.-.....+
T Consensus 129 ~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~PEa~i~La~av 208 (300)
T PRK14700 129 QLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRLVLAQAA 208 (300)
T ss_pred HHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 4455443 45666777777777777666665555555555555553 234455555555556543333333344
Q ss_pred HHHHhcCCHHHHHHHHHhhhh
Q 038852 543 ETFGKAGRGEEIERVLNADRW 563 (851)
Q Consensus 543 ~~~~~~G~~~eA~~ll~~~~~ 563 (851)
-.++.+-+-..+...+++...
T Consensus 209 iyLA~aPKSNs~y~A~~~A~~ 229 (300)
T PRK14700 209 IYLAVAPKSNACYKALAQAQQ 229 (300)
T ss_pred HHHHcCCCchHHHHHHHHHHH
Confidence 445555554444444444443
No 405
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.64 E-value=11 Score=37.92 Aligned_cols=64 Identities=9% Similarity=0.067 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038852 213 TYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCL 277 (851)
Q Consensus 213 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~ 277 (851)
.+.....++...|++-++++.-.++++.... ++.+|..-+.+.+..=+.++|.+-|.++++.+.
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~-nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPG-NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 3444556666777777888877777777554 677777777777777777777777777776643
No 406
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.60 E-value=41 Score=37.99 Aligned_cols=289 Identities=12% Similarity=0.025 Sum_probs=135.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-cCCcc-----chhhHHHHHHHHHHcCCHHH--HHHHHHHHHHhcCCCCHHHHHHHH
Q 038852 252 LISGFLNLGNLEKANELFDELKQ-RCLVY-----DGVVNATFMEWWFNQGKDKE--AMQSYKSLMERNFRMTPATCNTLL 323 (851)
Q Consensus 252 Li~~~~~~g~~~~A~~~~~~~~~-~~~~~-----d~~~~~~li~~~~~~g~~~~--A~~l~~~~~~~~~~~~~~~~~~Li 323 (851)
++......|+-+++...+-+... .++.. -...|..++..+...+..+. ..+.+....+.-+ ++....-.-.
T Consensus 196 ~l~vvgf~g~r~egl~~Lw~~a~~~s~~~~i~~l~L~~y~~~~~~~~~~p~~d~~~~~~~Ll~~~~~~p-~ga~wll~~a 274 (546)
T KOG3783|consen 196 LLSVVGFSGDRDEGLRLLWEAAKQRNFRGAIALLALLCYYQFISFVLGTPNPDGEECEKALKKYRKRYP-KGALWLLMEA 274 (546)
T ss_pred HHHHHhhcccHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHhHHHHHhCC-CCccHHHHHH
Confidence 34445556666666655544432 21110 01122333444444443333 3333333333322 2222222334
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHH
Q 038852 324 EVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIA 403 (851)
Q Consensus 324 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~ 403 (851)
..+...|+.+.|+.+++.+++ +...-+....+..++..+....++..|...++.+.+...- .-..|..+..
T Consensus 275 r~l~~~g~~eaa~~~~~~~v~----~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdW-----S~a~Y~Yfa~ 345 (546)
T KOG3783|consen 275 RILSIKGNSEAAIDMESLSIP----IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDW-----SHAFYTYFAG 345 (546)
T ss_pred HHHHHcccHHHHHHHHHhccc----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhh-----hHHHHHHHHH
Confidence 555666777778887776654 1111112334556666677777888888888877654321 3333443432
Q ss_pred HHH--------h-cCCHHHHHHHHHHHHh---C---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-cch-h
Q 038852 404 RYC--------E-NEMLEEAEKLLREIST---K---SLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLR-VVV-S 466 (851)
Q Consensus 404 ~~~--------~-~g~~~~A~~l~~~m~~---~---g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~-~~~-~ 466 (851)
+|. . .|+.++|-.+++...+ . .++.+.. ...+|.++-++.. .+.. +.. .
T Consensus 346 cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f-------------~~RKverf~~~~~-~~~~~~la~P 411 (546)
T KOG3783|consen 346 CCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKF-------------IVRKVERFVKRGP-LNASILLASP 411 (546)
T ss_pred HHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHH-------------HHHHHHHHhcccc-ccccccccch
Confidence 221 1 1233333333222111 0 0110110 1222322222211 1111 111 0
Q ss_pred HHH--HHHHHHHHcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHHcCCC------CCH
Q 038852 467 FGT--KVFNELITKGKVAECAPILTKMGEKDP-KPDFLIYDVVVRGL--CNEGLFDMSKDIVDQMMKYGVG------ITP 535 (851)
Q Consensus 467 ~~~--~L~~~~~~~g~~~~A~~ll~~m~~~~~-~pd~~~~~~ll~a~--~~~g~~~~A~~~~~~m~~~g~~------~~~ 535 (851)
++. .+.++|...+ .++..++........+ ..|......++.++ .+.|+-+.|..+|...++.... .-+
T Consensus 412 ~~El~Y~Wngf~~~s-~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~P 490 (546)
T KOG3783|consen 412 YYELAYFWNGFSRMS-KNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVP 490 (546)
T ss_pred HHHHHHHHhhcccCC-hhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcccccccc
Confidence 111 1223333322 3333333333333223 55666666666654 4679999999999988753222 233
Q ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHhhhhcC
Q 038852 536 ALQDFVRETFGKAGR-GEEIERVLNADRWGY 565 (851)
Q Consensus 536 ~~~~~L~~~~~~~G~-~~eA~~ll~~~~~~~ 565 (851)
..+..++-+|...|. +.++.+++.+.++-+
T Consensus 491 fA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 491 FALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 344447777777777 999999999988754
No 407
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=89.48 E-value=6.6 Score=40.25 Aligned_cols=117 Identities=14% Similarity=0.068 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHH
Q 038852 245 DSLVYNNLISGFLN-----LGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATC 319 (851)
Q Consensus 245 d~~~~~~Li~~~~~-----~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~ 319 (851)
|...|...+..+.. .+.++-....++.|.+.|+.-|..+|..|++.+-+..- .|. .++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-nvf 128 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-NVF 128 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH-HHH
Confidence 44555555554432 34566666777888888888888888888776543221 111 112
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcC----ChHHHHHHHHHhccC
Q 038852 320 NTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHG----KFSEAIETFKKAGTH 385 (851)
Q Consensus 320 ~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g----~~~~A~~~~~~~~~~ 385 (851)
-.+..-| -..-+-+++++++|...|+.| |.++-..|+.++.+.+ ++...+-++-+....
T Consensus 129 Q~~F~HY--P~QQ~C~I~vLeqME~hGVmP-----dkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPkfkn~ 191 (406)
T KOG3941|consen 129 QKVFLHY--PQQQNCAIKVLEQMEWHGVMP-----DKEIEDILVNAFGRWNFPTKKVKRMLYWMPKFKNS 191 (406)
T ss_pred HHHHhhC--chhhhHHHHHHHHHHHcCCCC-----chHHHHHHHHHhccccccHHHHHHHHHhhhhhccC
Confidence 2111112 123456899999999999999 7788888888887754 777777777665444
No 408
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=89.39 E-value=13 Score=41.77 Aligned_cols=120 Identities=13% Similarity=0.086 Sum_probs=73.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH-HHH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcC
Q 038852 404 RYCENEMLEEAEKLLREISTKSLSPDV-TTF---RTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKG 479 (851)
Q Consensus 404 ~~~~~g~~~~A~~l~~~m~~~g~~pd~-~~~---~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g 479 (851)
++..-|+-+.|..++++|... -|. .-| .+++.+|+..|+......++.-.+..+ .+++.-...+..++....
T Consensus 507 aLi~ygrqe~add~I~ell~d---~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~avsD~-nDDVrRAAViAlGfvc~~ 582 (926)
T COG5116 507 ALILYGRQEMADDYINELLYD---KDSILRYNGVFSLALAYVGTGNLGVVSTLLHYAVSDG-NDDVRRAAVIALGFVCCD 582 (926)
T ss_pred hHhhhhhHHHHHHHHHHHhcC---chHHhhhccHHHHHHHHhcCCcchhHhhhheeecccC-chHHHHHHHHheeeeEec
Confidence 344567788888888888753 122 222 356678888888887777776655543 334443344555666777
Q ss_pred CHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038852 480 KVAECAPILTKMGEK-DPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMK 528 (851)
Q Consensus 480 ~~~~A~~ll~~m~~~-~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~ 528 (851)
+.+.....++-+.+. +......+-..|.-+|...|+ ..|..+++.+..
T Consensus 583 D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~-~~a~diL~~L~~ 631 (926)
T COG5116 583 DRDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD-KVATDILEALMY 631 (926)
T ss_pred CcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc-HHHHHHHHHHhh
Confidence 777777777766654 122222233445555666665 567777777764
No 409
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.21 E-value=0.97 Score=30.14 Aligned_cols=30 Identities=27% Similarity=0.537 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 038852 431 TTFRTLIDAYLKVERIDDALELFNRMVESG 460 (851)
Q Consensus 431 ~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~ 460 (851)
.+|..++.+|...|++++|+..|+++++.+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 345666666666666666666666666543
No 410
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=89.20 E-value=7.2 Score=45.05 Aligned_cols=126 Identities=13% Similarity=0.260 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCcc--C-HHHHHHHHHHHHhcC
Q 038852 333 EEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAM--D-VAGYNNIIARYCENE 409 (851)
Q Consensus 333 ~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--d-~~~~~~li~~~~~~g 409 (851)
++--.++.+|...--.|++ +..++...++..|....+++..+++.+.+...+....+.- + ...|...+..-.+-|
T Consensus 180 ~~l~~~L~~mR~RlDnp~V--L~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~G 257 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDV--LHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPG 257 (1226)
T ss_pred HHHHHHHHHHHhhcCCccc--cCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCc
Confidence 4455667777765444433 3677888899999999999999999988866542211110 1 112333333344578
Q ss_pred CHHHHHHHHHHHHhCC--CCCCHHH-----HHH--HHHHHHHcCCHHHHHHHHHHHHHcC
Q 038852 410 MLEEAEKLLREISTKS--LSPDVTT-----FRT--LIDAYLKVERIDDALELFNRMVESG 460 (851)
Q Consensus 410 ~~~~A~~l~~~m~~~g--~~pd~~~-----~~~--Ll~~~~~~g~~~~A~~~~~~m~~~~ 460 (851)
|-++|+++.-.|++.. +.||... |.- +...|...+..+.|+++|+++.+..
T Consensus 258 DRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeve 317 (1226)
T KOG4279|consen 258 DRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVE 317 (1226)
T ss_pred cHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccC
Confidence 8899998888776642 4555432 211 1223445567788999999998754
No 411
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.98 E-value=1.1 Score=29.63 Aligned_cols=29 Identities=21% Similarity=0.439 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 038852 177 SYNNLINTYCDEGKVDEGMNVFRRIIETA 205 (851)
Q Consensus 177 ~~~~Li~~~~~~g~~~~A~~l~~~~~~~~ 205 (851)
.|..++.+|...|++++|++.|+++++.+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 34455555555555555555555555543
No 412
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.68 E-value=72 Score=39.56 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=10.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHH
Q 038852 429 DVTTFRTLIDAYLKVERIDDA 449 (851)
Q Consensus 429 d~~~~~~Ll~~~~~~g~~~~A 449 (851)
|...+..++..+...|.++.+
T Consensus 636 d~~slE~vl~~lv~~~~Id~~ 656 (1251)
T KOG0414|consen 636 DLTSLEEVLCELVARGYIDAA 656 (1251)
T ss_pred chhhHHHHHHHHHhCCCccHH
Confidence 444455555555555555443
No 413
>PRK12798 chemotaxis protein; Reviewed
Probab=88.58 E-value=43 Score=36.83 Aligned_cols=236 Identities=11% Similarity=0.038 Sum_probs=133.8
Q ss_pred CCccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHH
Q 038852 103 PRLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPT--VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNN 180 (851)
Q Consensus 103 ~~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~ 180 (851)
+..+....+.-++.-|+......++.. +..++ ......++ -+-.|+-++|.+.|..+.. ....+....|..
T Consensus 80 dprNv~Aa~iy~lSGGnP~vlr~L~~~----d~~~~~d~~L~~g~l--aY~~Gr~~~a~~~La~i~~-~~l~~~lg~~la 152 (421)
T PRK12798 80 DPRNVDAALIYLLSGGNPATLRKLLAR----DKLGNFDQRLADGAL--AYLSGRGREARKLLAGVAP-EYLPAELGAYLA 152 (421)
T ss_pred CccchhHHHhhHhcCCCHHHHHHHHHc----CCCChhhHHHHHHHH--HHHcCCHHHHHHHhhcCCh-hhcCchhhhHHH
Confidence 334556666666777787766555544 33322 22222222 2347999999999988732 234445556666
Q ss_pred HHHHHH-HcCChHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHH---HHHHHHHH
Q 038852 181 LINTYC-DEGKVDEGMNVFRRIIETAPVGP-SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSL---VYNNLISG 255 (851)
Q Consensus 181 Li~~~~-~~g~~~~A~~l~~~~~~~~~~~p-~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~---~~~~Li~~ 255 (851)
|+.+-. ...+..+|+++|+.+.-..|-.. .......-+......|+.+++..+-.....+- ..+.+ .+..+..+
T Consensus 153 Lv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF-~~S~YA~~F~~~F~~~ 231 (421)
T PRK12798 153 LVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRF-RHSPYASQFAQRFVDL 231 (421)
T ss_pred HHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHh-ccCchHHHHHHHHHHH
Confidence 666544 44678899999999865543311 12234445566778899998887777666542 21322 23333334
Q ss_pred HHhcCCHHHHHHHHHHHHh-cCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-----HhC
Q 038852 256 FLNLGNLEKANELFDELKQ-RCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVL-----LKH 329 (851)
Q Consensus 256 ~~~~g~~~~A~~~~~~~~~-~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~-----~~~ 329 (851)
+.+.++-..-.. +..++. .....-..+|..+...-.-.|+.+.|...-++++......+. -...+..| .-.
T Consensus 232 ~~~~~d~~~~~~-l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~--~~~ra~LY~aaa~v~s 308 (421)
T PRK12798 232 VVRLDDEIRDAR-LVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSA--DAARARLYRGAALVAS 308 (421)
T ss_pred HHhccccccHHH-HHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCc--chHHHHHHHHHHccCc
Confidence 444443222222 233322 233334567888888888889998888888777765422211 11122222 234
Q ss_pred CCHHHHHHHHHHHHHcCCCC
Q 038852 330 EKKEEAQALFEQMLDNHQPP 349 (851)
Q Consensus 330 g~~~~A~~l~~~m~~~~~~p 349 (851)
.+++++++.+..+-...+.+
T Consensus 309 ~~~~~al~~L~~I~~~~L~~ 328 (421)
T PRK12798 309 DDAESALEELSQIDRDKLSE 328 (421)
T ss_pred ccHHHHHHHHhcCChhhCCh
Confidence 56777777777765554444
No 414
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.94 E-value=0.76 Score=30.25 Aligned_cols=29 Identities=14% Similarity=0.021 Sum_probs=22.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhhhcCCC
Q 038852 539 DFVRETFGKAGRGEEIERVLNADRWGYAA 567 (851)
Q Consensus 539 ~~L~~~~~~~G~~~eA~~ll~~~~~~~~~ 567 (851)
..++.++.+.|++++|.++|+++...||+
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34667777788888888888888887775
No 415
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.91 E-value=1.4e+02 Score=41.87 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=13.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 038852 182 INTYCDEGKVDEGMNVFRRIIE 203 (851)
Q Consensus 182 i~~~~~~g~~~~A~~l~~~~~~ 203 (851)
+..|...|.+++|..+|+++..
T Consensus 2489 a~s~eQ~G~~e~AQ~lyekaq~ 2510 (3550)
T KOG0889|consen 2489 ALSYEQLGFWEEAQSLYEKAQV 2510 (3550)
T ss_pred HHHHHHhhhHHHHhhHHHHHHH
Confidence 3345666677777766666543
No 416
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=87.85 E-value=59 Score=37.60 Aligned_cols=136 Identities=13% Similarity=0.094 Sum_probs=75.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHH
Q 038852 409 EMLEEAEKLLREISTKSLSPDVTTFRTLIDA--YLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAP 486 (851)
Q Consensus 409 g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~--~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ 486 (851)
|++++|+..+++....+ .....+..-+.. ++.....+.-..+|+++...++.-.... -.+..-......+..
T Consensus 323 ~~l~eal~~~e~~c~~~--~~~lpi~~~~~lle~~d~~~~~~l~~~~e~~~~~~P~~~~~l----e~l~~~~~~~~~~~~ 396 (547)
T PF14929_consen 323 GRLKEALNELEKFCISS--TCALPIRLRAHLLEYFDQNNSSVLSSCLEDCLKKDPTMSYSL----ERLILLHQKDYSAEQ 396 (547)
T ss_pred ccHHHHHHHHHHhccCC--CccchHHHHHHHHHHhCcccHHHHHHHHHHHhcCCCcHHHHH----HHHHhhhhhHHHHHH
Confidence 78888888887765432 122222222222 3333467777888888888765332222 222222333566666
Q ss_pred HHHHH-hhCCCCCCHHHHHHHHHHHHh-cCCh-------HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCC
Q 038852 487 ILTKM-GEKDPKPDFLIYDVVVRGLCN-EGLF-------DMSKDIVDQMMKY-GVGITPALQDFVRETFGKAGR 550 (851)
Q Consensus 487 ll~~m-~~~~~~pd~~~~~~ll~a~~~-~g~~-------~~A~~~~~~m~~~-g~~~~~~~~~~L~~~~~~~G~ 550 (851)
+++.+ ...++.|...+|.-++.++.+ .+++ ..+++++-.+++. +...+...|.++.+.+-+.-.
T Consensus 397 Lle~i~~~l~~~~s~~iwle~~~~~l~~~~~~~~~~e~~~~~l~vlf~~LDf~~~r~n~~aW~~l~~~l~~i~~ 470 (547)
T PF14929_consen 397 LLEMIALHLDLVPSHPIWLEFVSCFLKNPSRFEDKEEDHKSALKVLFEFLDFAGWRKNIQAWKLLAKKLPKIFD 470 (547)
T ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHhccccccccHHHHHHHHhcchhcccccccccccHHHHHHHHHhhHhhh
Confidence 77644 233555888899888888877 3333 3444444444443 334455666666555544333
No 417
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.59 E-value=6 Score=41.16 Aligned_cols=101 Identities=19% Similarity=0.125 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038852 357 DTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTL 436 (851)
Q Consensus 357 ~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~L 436 (851)
.+...++..-....++++++.++-++.... ...+.++...+ .+++.| -.-+.++++.++..=+..|+-+|-++++.|
T Consensus 65 ~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~-~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c~l 141 (418)
T KOG4570|consen 65 LTVDRLVDVISSREEIDDAEYYLYKLRHSP-NAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFCLL 141 (418)
T ss_pred eehhhhhhccccccchhHHHHHHHHHhcCc-chhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccchhhHHHH
Confidence 344445555555677888888887775432 21222222211 222222 234667888888888888999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Q 038852 437 IDAYLKVERIDDALELFNRMVESG 460 (851)
Q Consensus 437 l~~~~~~g~~~~A~~~~~~m~~~~ 460 (851)
++.+.+.+++.+|..+...|+...
T Consensus 142 ~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 142 MDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999998888877543
No 418
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.52 E-value=0.0071 Score=56.90 Aligned_cols=53 Identities=13% Similarity=0.238 Sum_probs=26.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 218 TKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFD 270 (851)
Q Consensus 218 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~ 270 (851)
+..+.+.+.......+++.+...+..-+....+.++..|++.++.++.+++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33444445555555555555544433345555555555555555555554444
No 419
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.48 E-value=1.5 Score=29.04 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 038852 432 TFRTLIDAYLKVERIDDALELFNRMVES 459 (851)
Q Consensus 432 ~~~~Ll~~~~~~g~~~~A~~~~~~m~~~ 459 (851)
.|..++.+|...|++++|++.|+++++.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4455555666666666666666665554
No 420
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=87.41 E-value=13 Score=39.06 Aligned_cols=97 Identities=22% Similarity=0.264 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038852 141 TCNAIIAAMYRAKRYDDAVALFKYFFDQADIVP--NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLT 218 (851)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~p--d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li 218 (851)
.|.-=++-|.+.++|..|+..|.+.++..--.+ +++.|+.-..+-...|++..|+.-...++..++. ....|..=+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~--h~Ka~~R~A 160 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT--HLKAYIRGA 160 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc--hhhhhhhhh
Confidence 344456677888889999999888877544334 3667888888888888888888888888877665 556666667
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 038852 219 KGFVDAGRIGEAVDLLRDMLS 239 (851)
Q Consensus 219 ~~~~~~g~~~~A~~l~~~m~~ 239 (851)
.|+....++++|+...++.+.
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 777777888888877776644
No 421
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=87.40 E-value=5 Score=45.07 Aligned_cols=88 Identities=11% Similarity=0.083 Sum_probs=42.5
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHH
Q 038852 223 DAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQ 302 (851)
Q Consensus 223 ~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~ 302 (851)
..|+...|..++..+......-..+....|+..+.+.|....|-.++...+... .....++..+.++|....+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 345555555555555443322222334445555555555555555555544443 2234444444555555555555555
Q ss_pred HHHHHHHhc
Q 038852 303 SYKSLMERN 311 (851)
Q Consensus 303 l~~~~~~~~ 311 (851)
.|+.+++.+
T Consensus 698 ~~~~a~~~~ 706 (886)
T KOG4507|consen 698 AFRQALKLT 706 (886)
T ss_pred HHHHHHhcC
Confidence 555554443
No 422
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.33 E-value=69 Score=37.81 Aligned_cols=47 Identities=13% Similarity=0.085 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---HcCChhHHHHHHHHHHHc
Q 038852 121 DAASYLARQAVFSRIRPTVFTCNAIIAAMY---RAKRYDDAVALFKYFFDQ 168 (851)
Q Consensus 121 ~~A~~l~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~l~~~~~~~ 168 (851)
.+...+|-.+++..-..| .....|...|. ..+..+.|+.....+++.
T Consensus 45 ~DvSslF~dvvk~~~T~d-lelKKlvyLYl~nYa~~~P~~a~~avnt~~kD 94 (734)
T KOG1061|consen 45 KDVSSLFPDVVKCMQTRD-LELKKLVYLYLMNYAKGKPDLAILAVNTFLKD 94 (734)
T ss_pred cchHhhhHHHHhhcccCC-chHHHHHHHHHHHhhccCchHHHhhhhhhhcc
Confidence 334455666665443334 33444444443 357788888887777653
No 423
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=87.27 E-value=46 Score=35.74 Aligned_cols=81 Identities=11% Similarity=0.052 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHH
Q 038852 227 IGEAVDLLRDMLSRQL----GADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQ 302 (851)
Q Consensus 227 ~~~A~~l~~~m~~~g~----~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~ 302 (851)
.++|.+.|++.+..+. ..+......++....+.|+.+....+++...... +......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~---~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNST---SPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTS---THHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccC---CHHHHHHHHHhhhccCCHHHHHH
Confidence 3455555555554311 2344444444555555555444333333333221 33444455555555555555555
Q ss_pred HHHHHHHh
Q 038852 303 SYKSLMER 310 (851)
Q Consensus 303 l~~~~~~~ 310 (851)
+++.++..
T Consensus 223 ~l~~~l~~ 230 (324)
T PF11838_consen 223 LLDLLLSN 230 (324)
T ss_dssp HHHHHHCT
T ss_pred HHHHHcCC
Confidence 55555553
No 424
>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification]
Probab=87.25 E-value=9.6 Score=43.11 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=10.2
Q ss_pred CCCCCCCCcCcccccccc
Q 038852 758 GQQPSGYNRMGEQQHFGW 775 (851)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~ 775 (851)
|.||..+......|..+|
T Consensus 498 gapp~~p~~g~~~~~~~~ 515 (600)
T KOG1676|consen 498 GAPPQSPATGASDYSPQW 515 (600)
T ss_pred CCCCCCCCCCccccchhh
Confidence 455555555555565656
No 425
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=86.87 E-value=20 Score=37.54 Aligned_cols=60 Identities=15% Similarity=0.284 Sum_probs=32.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC-ccchhHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 038852 434 RTLIDAYLKVERIDDALELFNRMVESGL-RVVVSFGTKVFNELITKGKVAECAPILTKMGE 493 (851)
Q Consensus 434 ~~Ll~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~ 493 (851)
..|..+-.+.|+..+|.+.|+.+.+.-. .....+...|+.++....-+.++..++-+.-+
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3455555567777777777776665421 11122223455566665555555555555443
No 426
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=86.86 E-value=69 Score=38.64 Aligned_cols=56 Identities=11% Similarity=0.170 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038852 499 DFLIYDVVVRGLCNEGLFDMSKDIVDQMMK-YGVGITPALQDFVRETFGKAGRGEEI 554 (851)
Q Consensus 499 d~~~~~~ll~a~~~~g~~~~A~~~~~~m~~-~g~~~~~~~~~~L~~~~~~~G~~~eA 554 (851)
|..++..-..-+...|++..|++++.++++ .+-..+.+.+..+++++...|--..|
T Consensus 1230 dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~H~~ 1286 (1304)
T KOG1114|consen 1230 DSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWNHLA 1286 (1304)
T ss_pred CchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCchHhH
Confidence 555666556666677888888888888875 45556777777777777777755333
No 427
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.86 E-value=13 Score=41.91 Aligned_cols=101 Identities=16% Similarity=0.116 Sum_probs=68.0
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCChhHHHHHHHHHHHcCC--CCCCHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMY-RAKRYDDAVALFKYFFDQAD--IVPNIVSYNNL 181 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~l~~~~~~~~~--~~pd~~~~~~L 181 (851)
+.+++-+..+.+.|.+..|.+..+.++...+..|......+|+.|+ ++++|.--+++++....... .-||-..-.+|
T Consensus 343 L~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~Al 422 (665)
T KOG2422|consen 343 LALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLAL 422 (665)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHH
Confidence 3567778888899999999998888887777667888888888886 67888888888887632211 12343222344
Q ss_pred HHHHHHcCC---hHHHHHHHHHHHHhC
Q 038852 182 INTYCDEGK---VDEGMNVFRRIIETA 205 (851)
Q Consensus 182 i~~~~~~g~---~~~A~~l~~~~~~~~ 205 (851)
+..|..... -..|+..+.++++..
T Consensus 423 A~f~l~~~~~~~rqsa~~~l~qAl~~~ 449 (665)
T KOG2422|consen 423 ARFFLRKNEEDDRQSALNALLQALKHH 449 (665)
T ss_pred HHHHHhcCChhhHHHHHHHHHHHHHhC
Confidence 555554443 345666666666654
No 428
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=86.78 E-value=27 Score=41.79 Aligned_cols=46 Identities=11% Similarity=0.205 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038852 156 DDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIE 203 (851)
Q Consensus 156 ~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~ 203 (851)
++.++.++++++..++.-+......|++ ...|++.+|+.+++.++.
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia 226 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIA 226 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHH
Confidence 3445555555555555444444444432 334666666666665543
No 429
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=86.78 E-value=1.1 Score=49.37 Aligned_cols=103 Identities=16% Similarity=0.160 Sum_probs=58.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 038852 146 IAAMYRAKRYDDAVALFKYFFDQADIVPN-IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDA 224 (851)
Q Consensus 146 i~~~~~~g~~~~A~~l~~~~~~~~~~~pd-~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~ 224 (851)
+..+.+.++++.|+.++.++++.. || +..|..-..++.+.+++..|+.-+.++++.++. ....|..-+.++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld---pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~--~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD---PNCAIYFANRALAHLKVESFGGALHDALKAIELDPT--YIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC---CcceeeechhhhhheeechhhhHHHHHHhhhhcCch--hhheeeeccHHHHhH
Confidence 444556677777777777776643 33 333444445667777777777777777766533 334444445555556
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038852 225 GRIGEAVDLLRDMLSRQLGADSLVYNNLISG 255 (851)
Q Consensus 225 g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~ 255 (851)
+.+.+|+..|+..... .|+..-...++.-
T Consensus 86 ~~~~~A~~~l~~~~~l--~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKL--APNDPDATRKIDE 114 (476)
T ss_pred HHHHHHHHHHHHhhhc--CcCcHHHHHHHHH
Confidence 6666666666665543 3344434434433
No 430
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=86.52 E-value=48 Score=35.20 Aligned_cols=104 Identities=11% Similarity=0.076 Sum_probs=51.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHH
Q 038852 320 NTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYN 399 (851)
Q Consensus 320 ~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~ 399 (851)
..++..|...+++.+|+.+...++..-.+-|....-.+++..=-.+|....++.+|..-+..+.......-..|-...-.
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 34677788888888888776665542111111100122233334456666677777766665543322211112111111
Q ss_pred HHHHH--HHhcCCHHHHHHHHHHHHh
Q 038852 400 NIIAR--YCENEMLEEAEKLLREIST 423 (851)
Q Consensus 400 ~li~~--~~~~g~~~~A~~l~~~m~~ 423 (851)
.|..+ ++...++.-|..+|-+..+
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfE 237 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFE 237 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHc
Confidence 11111 2334677777777766655
No 431
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=85.57 E-value=21 Score=41.53 Aligned_cols=114 Identities=16% Similarity=0.165 Sum_probs=52.7
Q ss_pred HHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccc-------hhhHHHHHHHHHHcCCHHHH
Q 038852 231 VDLLRDMLSRQLGAD---SLVYNNLISGFLNLGNLEKANELFDELKQRCLVYD-------GVVNATFMEWWFNQGKDKEA 300 (851)
Q Consensus 231 ~~l~~~m~~~g~~pd---~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d-------~~~~~~li~~~~~~g~~~~A 300 (851)
..++++|..+--.|+ ..+...++..|....|++..+++.+.+.+.--..+ ...|...++--.+-||-++|
T Consensus 183 ~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakA 262 (1226)
T KOG4279|consen 183 NDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKA 262 (1226)
T ss_pred HHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHH
Confidence 344555555433333 24455556666666666666666665554310000 01122222222334566666
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHH---------HHHhCCCHHHHHHHHHHHHH
Q 038852 301 MQSYKSLMERNFRMTPATCNTLLE---------VLLKHEKKEEAQALFEQMLD 344 (851)
Q Consensus 301 ~~l~~~~~~~~~~~~~~~~~~Li~---------~~~~~g~~~~A~~l~~~m~~ 344 (851)
++..-.+++..-......|...++ .|...+..+.|++.|+++.+
T Consensus 263 L~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe 315 (1226)
T KOG4279|consen 263 LNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE 315 (1226)
T ss_pred HHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc
Confidence 666655555432211122222222 22334456677777777765
No 432
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=85.41 E-value=24 Score=36.43 Aligned_cols=65 Identities=9% Similarity=0.080 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 038852 318 TCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382 (851)
Q Consensus 318 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 382 (851)
....|+..|.+.|++++|+++|+.+...-.......+...+...+..++.+.|+.++.+.+.-++
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34457788888899999999998885432211111224556667777888888888777665544
No 433
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=85.17 E-value=29 Score=41.54 Aligned_cols=85 Identities=16% Similarity=0.252 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------------CCHHHHHHHHHHHH
Q 038852 191 VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG-------------ADSLVYNNLISGFL 257 (851)
Q Consensus 191 ~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~-------------pd~~~~~~Li~~~~ 257 (851)
.++..+.++++.+..++..+......+++ ...|++.+|+.+++.++..+.. .|...+..|++.+.
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~ 257 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALA 257 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 35666777777766656556655555543 3468889999888876644311 12222333333332
Q ss_pred hcCCHHHHHHHHHHHHhcCCc
Q 038852 258 NLGNLEKANELFDELKQRCLV 278 (851)
Q Consensus 258 ~~g~~~~A~~~~~~~~~~~~~ 278 (851)
.+++++++.+++++...|..
T Consensus 258 -~~d~~~~l~~~~~l~~~g~~ 277 (830)
T PRK07003 258 -AGDGPEILAVADEMALRSLS 277 (830)
T ss_pred -cCCHHHHHHHHHHHHHhCCC
Confidence 35666666666666655544
No 434
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.06 E-value=12 Score=31.82 Aligned_cols=62 Identities=13% Similarity=0.131 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038852 480 KVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVR 542 (851)
Q Consensus 480 ~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~ 542 (851)
|.-++.+-++.+...++.|+..+..+.+++|.+.+++..|+++|+-++.+. .....+|.+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 445666777777778888999999999999999999999999999877322 12344555544
No 435
>PRK13342 recombination factor protein RarA; Reviewed
Probab=84.91 E-value=55 Score=36.72 Aligned_cols=84 Identities=15% Similarity=0.132 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 038852 479 GKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGL-----FDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEE 553 (851)
Q Consensus 479 g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~-----~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~e 553 (851)
.+.+.|+.++.+|++.|..|....-..++.++...|. ...|...++.+...|++.-.-.....+-.++.+-+-..
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~pe~~~~l~~~~~~l~~~pksn~ 323 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPEGRIALAQAVIYLALAPKSNA 323 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHcCCCccH
Confidence 5566666666666665555444443333334333332 22333334444444543333333333333444444444
Q ss_pred HHHHHHhhh
Q 038852 554 IERVLNADR 562 (851)
Q Consensus 554 A~~ll~~~~ 562 (851)
+...+++..
T Consensus 324 ~~~a~~~a~ 332 (413)
T PRK13342 324 AYTAINAAL 332 (413)
T ss_pred HHHHHHHHH
Confidence 444444333
No 436
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.83 E-value=0.95 Score=47.51 Aligned_cols=89 Identities=18% Similarity=0.168 Sum_probs=49.4
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 038852 151 RAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEA 230 (851)
Q Consensus 151 ~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A 230 (851)
..|.+++|++.|...+.... +....|..-..+++++++...|++-++.+++.++. ...-|-.-..+....|++++|
T Consensus 126 n~G~~~~ai~~~t~ai~lnp--~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D--sa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNP--PLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD--SAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred cCcchhhhhcccccccccCC--chhhhcccccceeeeccCCchhhhhhhhhhccCcc--cccccchhhHHHHHhhchHHH
Confidence 45666666666666554321 33444555555666666666666666666665543 222333344444455666666
Q ss_pred HHHHHHHHhcCCC
Q 038852 231 VDLLRDMLSRQLG 243 (851)
Q Consensus 231 ~~l~~~m~~~g~~ 243 (851)
...|+.+.+.++.
T Consensus 202 a~dl~~a~kld~d 214 (377)
T KOG1308|consen 202 AHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHhcccc
Confidence 6666666665543
No 437
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.75 E-value=0.84 Score=47.87 Aligned_cols=90 Identities=17% Similarity=0.104 Sum_probs=64.8
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKA 265 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A 265 (851)
...|.+++|++.|...++.++. ....|..-..++++.++...|++-++.+++.+.. ...-|-.-..+-..+|++++|
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~--~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPP--LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccCCc--hhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHH
Confidence 4567788888888888887654 6667777778888888888888888888776543 333454455555667888888
Q ss_pred HHHHHHHHhcCCc
Q 038852 266 NELFDELKQRCLV 278 (851)
Q Consensus 266 ~~~~~~~~~~~~~ 278 (851)
...|+...+.+..
T Consensus 202 a~dl~~a~kld~d 214 (377)
T KOG1308|consen 202 AHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHhcccc
Confidence 8888877776554
No 438
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=84.66 E-value=5.3 Score=34.25 Aligned_cols=55 Identities=22% Similarity=0.321 Sum_probs=27.0
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 038852 150 YRAKRYDDAVALFKYFFDQADIVPN-------IVSYNNLINTYCDEGKVDEGMNVFRRIIET 204 (851)
Q Consensus 150 ~~~g~~~~A~~l~~~~~~~~~~~pd-------~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~ 204 (851)
.+.|++.+|++.+.++++.....-+ ......++......|++++|+..++++++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3566666665555554432111111 122233444555566666666666666544
No 439
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.61 E-value=2.2 Score=29.67 Aligned_cols=27 Identities=30% Similarity=0.645 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038852 177 SYNNLINTYCDEGKVDEGMNVFRRIIE 203 (851)
Q Consensus 177 ~~~~Li~~~~~~g~~~~A~~l~~~~~~ 203 (851)
+++.|+.+|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 445555555555555555555555543
No 440
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=84.43 E-value=66 Score=34.91 Aligned_cols=90 Identities=10% Similarity=0.036 Sum_probs=62.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHcCCcc---
Q 038852 399 NNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRT------------LIDAYLKVERIDDALELFNRMVESGLRV--- 463 (851)
Q Consensus 399 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~------------Ll~~~~~~g~~~~A~~~~~~m~~~~~~~--- 463 (851)
..|...+...|++++|.+++.++. +.||.+ -++.|...+||-.|--+-+++...-+..
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~-------VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~ 207 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQ-------VETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDV 207 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcc-------hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccH
Confidence 456677888999999999987653 233322 2456777888888877777766543322
Q ss_pred ---chhHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 038852 464 ---VVSFGTKVFNELITKGKVAECAPILTKMGEKD 495 (851)
Q Consensus 464 ---~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~ 495 (851)
-..+|..++......+.+-++.+.|+...+.+
T Consensus 208 ~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~ 242 (439)
T KOG1498|consen 208 QELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTG 242 (439)
T ss_pred HHHHHHHHHHHHHhcccccchhhHHHHHHHHhccc
Confidence 34567777777777888888888888876653
No 441
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.21 E-value=14 Score=31.80 Aligned_cols=48 Identities=13% Similarity=0.303 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038852 229 EAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRC 276 (851)
Q Consensus 229 ~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~ 276 (851)
+..+-++.+...++.|+..+..+.+++|.+.+|+..|.++|+-++.+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~ 75 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC 75 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 556667777777788888888888888888888888888888877653
No 442
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.07 E-value=2.2 Score=28.33 Aligned_cols=28 Identities=29% Similarity=0.521 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 038852 177 SYNNLINTYCDEGKVDEGMNVFRRIIET 204 (851)
Q Consensus 177 ~~~~Li~~~~~~g~~~~A~~l~~~~~~~ 204 (851)
+|..+..+|...|++++|++.|+++++.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455555555555555555555555543
No 443
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=83.88 E-value=8.8 Score=47.67 Aligned_cols=218 Identities=18% Similarity=0.183 Sum_probs=108.4
Q ss_pred CCCccHHHHHHHHHHcCCHHHHHHHHHHHHH-cC--CCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHcCCCCCCHHH
Q 038852 102 GPRLNLHNRVQSLIRAGDLDAASYLARQAVF-SR--IRPTVFTCNAIIAAMYRA-KRYDDAVALFKYFFDQADIVPNIVS 177 (851)
Q Consensus 102 ~~~~~l~~ll~~l~~~g~~~~A~~l~~~~~~-~~--~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~~~~~~~~~pd~~~ 177 (851)
.||.-....++.++..++|.+|..+.++-.- .+ ..-|...|..-+..+.+. ++.+ -+.+|-.-++..++.. ..
T Consensus 692 ~PR~LVL~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~-~lnLFls~L~~EDvt~--tm 768 (928)
T PF04762_consen 692 YPRALVLAGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVD-YLNLFLSSLRNEDVTK--TM 768 (928)
T ss_pred ccHhHHHHHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHH-HHHHHHHhcccccccc--cc
Confidence 4555667789999999999999888776221 01 122344444445555443 4433 3333333223221111 11
Q ss_pred HHHHH------------HHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCC
Q 038852 178 YNNLI------------NTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAG--RIGEAVDLLRDMLSRQLG 243 (851)
Q Consensus 178 ~~~Li------------~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g--~~~~A~~l~~~m~~~g~~ 243 (851)
|.... ......++++...+.+.+.++.. . -....+..++.+|++.+ ++++|+.+..++.+.
T Consensus 769 Y~~~~~~~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~~-~-~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~--- 843 (928)
T PF04762_consen 769 YKDTYPPSSEAQPNSNSSTASSESKVNKICDAIRKALEKP-K-DKDKYLQPILTAYVKKSPPDLEEALQLIKELREE--- 843 (928)
T ss_pred cccccccccccccccccCCCccccHHHHHHHHHHHHhccc-c-cchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc---
Confidence 11111 11123344555555555555421 1 13345677888999999 999999999999876
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 038852 244 ADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLL 323 (851)
Q Consensus 244 pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li 323 (851)
+.......+...+-+ -.+.++|+.++.. .|. -..++-+-....|.+|=+-+++++.+... + .-...|
T Consensus 844 -~~~~ae~alkyl~fL---vDvn~Ly~~ALG~---YDl--~Lal~VAq~SQkDPKEYLPfL~~L~~l~~--~--~rry~I 910 (928)
T PF04762_consen 844 -DPESAEEALKYLCFL---VDVNKLYDVALGT---YDL--ELALMVAQQSQKDPKEYLPFLQELQKLPP--L--YRRYKI 910 (928)
T ss_pred -ChHHHHHHHhHheee---ccHHHHHHHHhhh---cCH--HHHHHHHHHhccChHHHHHHHHHHHhCCh--h--heeeeH
Confidence 222222222222221 1223333333321 011 11223333444566666666665554421 0 011122
Q ss_pred HHHHhCCCHHHHHHHHHHH
Q 038852 324 EVLLKHEKKEEAQALFEQM 342 (851)
Q Consensus 324 ~~~~~~g~~~~A~~l~~~m 342 (851)
+ ...+++++|++.+.++
T Consensus 911 D--~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 911 D--DHLKRYEKALRHLSAC 927 (928)
T ss_pred h--hhhCCHHHHHHHHHhh
Confidence 2 3458899998877653
No 444
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.67 E-value=37 Score=41.70 Aligned_cols=62 Identities=16% Similarity=0.219 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 038852 318 TCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKK 381 (851)
Q Consensus 318 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 381 (851)
.|..++..+.+.+..+++..+-..+++. . ++..+.-..+++.+.+.....|.+-+|.+.+-.
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~-l-~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~ 1046 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN-L-PDDNPSVALISTTVFNHHLDLGHWFQAYKAILR 1046 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-C-CCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc
Confidence 3555666666667777777766666653 1 111111334555566666666666666555443
No 445
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=83.64 E-value=1.2e+02 Score=37.30 Aligned_cols=30 Identities=17% Similarity=0.224 Sum_probs=20.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Q 038852 433 FRTLIDAYLKVERIDDALELFNRMVESGLRV 463 (851)
Q Consensus 433 ~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~ 463 (851)
...+++++. .++...++.+++++++.|..+
T Consensus 251 I~~lidAL~-~~D~a~al~~l~~Li~~G~dp 280 (824)
T PRK07764 251 IDEAVDALA-AGDGAALFGTVDRVIEAGHDP 280 (824)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHcCCCH
Confidence 334445444 577888888888888877543
No 446
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=83.62 E-value=65 Score=34.20 Aligned_cols=113 Identities=15% Similarity=0.179 Sum_probs=54.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038852 180 NLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL 259 (851)
Q Consensus 180 ~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~ 259 (851)
.++..+.+.+++.+.++.++.+.. ...-...+..+...|+|..|++++.+..+.- . +..-|..+-..-.
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~~-------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~~~L~~-- 171 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIKT-------VQQTQSRLQELLEEGDYPGALDLIEECQQLL-E-ELKGYSCVRHLSS-- 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H-hcccchHHHHHhH--
Confidence 344445555555555555555532 2233445566667777777777776665531 1 1111111111111
Q ss_pred CCHHHHHHHHHHHHh-----cCCccchhhHHHHHHHHHHcCCHHHHHHHH
Q 038852 260 GNLEKANELFDELKQ-----RCLVYDGVVNATFMEWWFNQGKDKEAMQSY 304 (851)
Q Consensus 260 g~~~~A~~~~~~~~~-----~~~~~d~~~~~~li~~~~~~g~~~~A~~l~ 304 (851)
++++-....+++++ .....|...|..+..+|...|+...+.+-+
T Consensus 172 -~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl 220 (291)
T PF10475_consen 172 -QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKL 220 (291)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 12222222222221 122357777888888887777766655433
No 447
>PRK13342 recombination factor protein RarA; Reviewed
Probab=83.49 E-value=83 Score=35.33 Aligned_cols=33 Identities=18% Similarity=0.040 Sum_probs=20.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038852 408 NEMLEEAEKLLREISTKSLSPDVTTFRTLIDAY 440 (851)
Q Consensus 408 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~ 440 (851)
..+.+.|+.++.+|++.|..|....-..++.++
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 467788888888888777665544434333333
No 448
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.41 E-value=90 Score=35.69 Aligned_cols=54 Identities=20% Similarity=0.158 Sum_probs=33.6
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 038852 220 GFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFL-NLGNLEKANELFDELK 273 (851)
Q Consensus 220 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~-~~g~~~~A~~~~~~~~ 273 (851)
.+.+.|.+..|+++.+.++.....-|......+|+.|+ +..++.--++++++..
T Consensus 351 ~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 351 SLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34456777777777777766655546666666666654 4556666666666554
No 449
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.40 E-value=33 Score=42.09 Aligned_cols=125 Identities=11% Similarity=0.089 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HH
Q 038852 357 DTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDV----TT 432 (851)
Q Consensus 357 ~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~ 432 (851)
..|..++..+...+..|.+..+-.++++.-+... .--..+++++.+-....|.+-+|.+.+-.- ||. ..
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~-ps~a~~~t~vFnhhldlgh~~qAy~ai~~n------pdserrrdc 1056 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDN-PSVALISTTVFNHHLDLGHWFQAYKAILRN------PDSERRRDC 1056 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcc-hhHHHHHHHHHHhhhchhhHHHHHHHHHcC------CcHHHHHHH
Confidence 3466777888888888888887777665433321 113456777777777788887777665332 343 24
Q ss_pred HHHHHHHHHHcCCHH------------HHHH-HHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHH
Q 038852 433 FRTLIDAYLKVERID------------DALE-LFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPIL 488 (851)
Q Consensus 433 ~~~Ll~~~~~~g~~~------------~A~~-~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll 488 (851)
...|+..++.+|.++ +... +++...+...-....+|..|...+...+++.+|-.+.
T Consensus 1057 LRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1057 LRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 455666666666543 3344 4444444444455667777777778888888876553
No 450
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=83.38 E-value=49 Score=39.79 Aligned_cols=73 Identities=7% Similarity=-0.012 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCCCccCHHHHHHHHHHHHHcCChHH
Q 038852 297 DKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNH-QPPNIQAVNSDTFNIMVNECFKHGKFSE 374 (851)
Q Consensus 297 ~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~-~~p~~~~~~~~~~~~L~~~~~~~g~~~~ 374 (851)
.+.-.+.|.++++.--..|..+|..-..-+...|.+..|++++.++++.. ..+ +...|..++..+...|--..
T Consensus 1212 ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~-----t~~~~~~~~el~~~Lgw~H~ 1285 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESA-----TKDVAVLLAELLENLGWNHL 1285 (1304)
T ss_pred hhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccc-----hhHHHHHHHHHHHHhCchHh
Confidence 33344455555443222344556555566667778888888888777632 233 56677778888888777633
No 451
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.25 E-value=15 Score=36.22 Aligned_cols=78 Identities=18% Similarity=0.168 Sum_probs=56.0
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCCH
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQ---LGADSLVYNNLISGFLNLGNL 262 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g---~~pd~~~~~~Li~~~~~~g~~ 262 (851)
.+.|| ++|++.|-.+.... .--+......|+..|. ..+.++++.++.++++.. -..|...+.+|+..|.+.|++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~-~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTP-ELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hccCc-HHHHHHHHHHcCCC-CCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 34444 56888888775443 3345556666665555 678899999998888742 356788999999999999999
Q ss_pred HHHH
Q 038852 263 EKAN 266 (851)
Q Consensus 263 ~~A~ 266 (851)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8885
No 452
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=83.16 E-value=47 Score=32.29 Aligned_cols=57 Identities=14% Similarity=0.264 Sum_probs=35.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc--------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038852 507 VRGLCNEGLFDMSKDIVDQMMKY--------------GVGITPALQDFVRETFGKAGRGEEIERVLNADRW 563 (851)
Q Consensus 507 l~a~~~~g~~~~A~~~~~~m~~~--------------g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~ 563 (851)
+-.|.+.-+|.+++++++.|-+. +....-.+.+..++++.+.|.+|.|+.++++-.|
T Consensus 139 m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLreseW 209 (233)
T PF14669_consen 139 MYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRESEW 209 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhccce
Confidence 33444445555555555555431 1223344566678899999999999999997443
No 453
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=83.12 E-value=14 Score=33.78 Aligned_cols=71 Identities=10% Similarity=0.090 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHHc---CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 038852 137 PTVFTCNAIIAAMYRA---KRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPV 207 (851)
Q Consensus 137 ~~~~~~~~li~~~~~~---g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~ 207 (851)
.+..+-..+..++.+. .+..+.+.+|+++++......+......|.-++.+.++|++++++++.+++..+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 3444445566666654 4556778888888763222233445556777788999999999999999887654
No 454
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.12 E-value=2.7 Score=29.27 Aligned_cols=27 Identities=30% Similarity=0.562 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 038852 213 TYRHLTKGFVDAGRIGEAVDLLRDMLS 239 (851)
Q Consensus 213 ~~~~Li~~~~~~g~~~~A~~l~~~m~~ 239 (851)
+++.|+.+|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 555666666666666666666665554
No 455
>COG4715 Uncharacterized conserved protein [Function unknown]
Probab=83.05 E-value=91 Score=35.50 Aligned_cols=89 Identities=15% Similarity=0.134 Sum_probs=35.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHH
Q 038852 286 TFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNE 365 (851)
Q Consensus 286 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~ 365 (851)
..+-.+.+.+...+++.+.++..... ..|..++..+...+...+|...+-+-.+.... . .........++..
T Consensus 308 r~v~~l~~a~~~~e~i~~~~~ea~~~-----~~yl~~v~llle~~~~~~a~~wl~~~~r~a~~-q--~~t~q~~q~l~el 379 (587)
T COG4715 308 REVPALASAGLQHEAIRLCEREAEGP-----GSYLDLVELLLESGEPSKAELWLARGIRTARE-Q--LQTTQLPQTLAEL 379 (587)
T ss_pred HhhhhhccchhhHHHHHHHHHHhcCc-----ccHHHHHHHHHhcCChhHHHHHHHHHHhhhhH-h--hhhhhhHHHHHHH
Confidence 33344444444444444444433221 23444444444444444444433332222111 0 0022333444444
Q ss_pred HHHcCChHHHHHHHHHh
Q 038852 366 CFKHGKFSEAIETFKKA 382 (851)
Q Consensus 366 ~~~~g~~~~A~~~~~~~ 382 (851)
+...|++-.|.++-...
T Consensus 380 ~~~~g~~~~a~~Laq~~ 396 (587)
T COG4715 380 KEEEGRLGFAAELAQEA 396 (587)
T ss_pred HHhhcchHHHHHHHHHH
Confidence 44444444444444443
No 456
>COG4715 Uncharacterized conserved protein [Function unknown]
Probab=82.86 E-value=93 Score=35.45 Aligned_cols=94 Identities=14% Similarity=0.070 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CCHHHHHHHHH
Q 038852 247 LVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFR--MTPATCNTLLE 324 (851)
Q Consensus 247 ~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~--~~~~~~~~Li~ 324 (851)
..+...+.++...+...+++.+.++.... ...|..+..++...+...+|...+-+-.+..-. -+....-.+++
T Consensus 304 ~~~~r~v~~l~~a~~~~e~i~~~~~ea~~-----~~~yl~~v~llle~~~~~~a~~wl~~~~r~a~~q~~t~q~~q~l~e 378 (587)
T COG4715 304 VVVDREVPALASAGLQHEAIRLCEREAEG-----PGSYLDLVELLLESGEPSKAELWLARGIRTAREQLQTTQLPQTLAE 378 (587)
T ss_pred HHHHHhhhhhccchhhHHHHHHHHHHhcC-----cccHHHHHHHHHhcCChhHHHHHHHHHHhhhhHhhhhhhhHHHHHH
Confidence 45556677777888888888877766542 345667777788888877777665444333221 12234556778
Q ss_pred HHHhCCCHHHHHHHHHHHHHc
Q 038852 325 VLLKHEKKEEAQALFEQMLDN 345 (851)
Q Consensus 325 ~~~~~g~~~~A~~l~~~m~~~ 345 (851)
.+...|+.-.|.++-......
T Consensus 379 l~~~~g~~~~a~~Laq~~F~r 399 (587)
T COG4715 379 LKEEEGRLGFAAELAQEAFFR 399 (587)
T ss_pred HHHhhcchHHHHHHHHHHccC
Confidence 888888888888887776653
No 457
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=82.84 E-value=2.1 Score=47.15 Aligned_cols=97 Identities=14% Similarity=0.136 Sum_probs=71.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTV-FTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTY 185 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~ 185 (851)
+.+.+..+++.++++.|+.++.++++.. +|- ..|..-..++.+.+++..|+.=+.++++... .....|..-+.++
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP--~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDP--TYIKAYVRRGTAV 82 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCc--hhhheeeeccHHH
Confidence 4566788899999999999999999654 433 3333333677899999999998888877541 2344566666677
Q ss_pred HHcCChHHHHHHHHHHHHhCCC
Q 038852 186 CDEGKVDEGMNVFRRIIETAPV 207 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~ 207 (851)
.+.+++.+|+..|+......|.
T Consensus 83 m~l~~~~~A~~~l~~~~~l~Pn 104 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKLAPN 104 (476)
T ss_pred HhHHHHHHHHHHHHHhhhcCcC
Confidence 7888899999999988775544
No 458
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=82.72 E-value=9.9 Score=38.25 Aligned_cols=69 Identities=16% Similarity=0.175 Sum_probs=43.1
Q ss_pred HHHHHHHHHhCCC-------HHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCC
Q 038852 319 CNTLLEVLLKHEK-------KEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPK 387 (851)
Q Consensus 319 ~~~Li~~~~~~g~-------~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~ 387 (851)
+..++..|...|+ +..|++.|+++......|.....+..+...++..+.+.|++++|.++|.++.....
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 3344455555555 34567777777665444322111344566677888888999999999988876543
No 459
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.68 E-value=68 Score=33.78 Aligned_cols=105 Identities=10% Similarity=-0.031 Sum_probs=53.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHH-
Q 038852 320 NTLLEVLLKHEKKEEAQALFEQMLDNH-QPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAG- 397 (851)
Q Consensus 320 ~~Li~~~~~~g~~~~A~~l~~~m~~~~-~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~- 397 (851)
..|...|.+.++|+.|-.++..+-..+ ..-........++..+++.|.+.++..+|..+..+..-...... +...
T Consensus 107 l~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~---Ne~Lq 183 (399)
T KOG1497|consen 107 LHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESS---NEQLQ 183 (399)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhccc---CHHHH
Confidence 345566666666666666655443221 11111111234667778888888888888887776532211110 2221
Q ss_pred ---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038852 398 ---YNNIIARYCENEMLEEAEKLLREISTKSLS 427 (851)
Q Consensus 398 ---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 427 (851)
-.+.++++-..++|-+|-.-|.++....+-
T Consensus 184 ie~kvc~ARvlD~krkFlEAAqrYyels~~ki~ 216 (399)
T KOG1497|consen 184 IEYKVCYARVLDYKRKFLEAAQRYYELSQRKIV 216 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 122333344455565555555555544443
No 460
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=82.65 E-value=1.4e+02 Score=37.38 Aligned_cols=93 Identities=10% Similarity=-0.079 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHH
Q 038852 394 DVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFN 473 (851)
Q Consensus 394 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~ 473 (851)
|...-...+.++...|..+.+...+..+++. +|..+-...+.++.+.+. +++...+..+++. ++...-...+.
T Consensus 788 d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~D---~~~~VR~~A~~ 860 (897)
T PRK13800 788 DPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGAARALAGAAA-DVAVPALVEALTD---PHLDVRKAAVL 860 (897)
T ss_pred CHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHHHHHHhccc-cchHHHHHHHhcC---CCHHHHHHHHH
Confidence 4444555555555555544333333333332 233333344444444443 3344444444432 12222223444
Q ss_pred HHHHcCCHHHHHHHHHHHhh
Q 038852 474 ELITKGKVAECAPILTKMGE 493 (851)
Q Consensus 474 ~~~~~g~~~~A~~ll~~m~~ 493 (851)
++.+.+.-..+...+..+++
T Consensus 861 aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 861 ALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHhccCCCHHHHHHHHHHHh
Confidence 44443223345555555444
No 461
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=82.59 E-value=81 Score=34.58 Aligned_cols=31 Identities=35% Similarity=0.352 Sum_probs=15.8
Q ss_pred HHHHHHHHHH---cCCHHHHHHHHHHHHHcCCcc
Q 038852 433 FRTLIDAYLK---VERIDDALELFNRMVESGLRV 463 (851)
Q Consensus 433 ~~~Ll~~~~~---~g~~~~A~~~~~~m~~~~~~~ 463 (851)
+..++.++.| -.+.+.|+-++.+|++.|..|
T Consensus 249 hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp 282 (436)
T COG2256 249 HYDLISALHKSVRGSDPDAALYYLARMIEAGEDP 282 (436)
T ss_pred HHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCH
Confidence 3344444443 245555666666666655433
No 462
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.58 E-value=21 Score=30.84 Aligned_cols=62 Identities=15% Similarity=0.129 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038852 481 VAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRE 543 (851)
Q Consensus 481 ~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~ 543 (851)
.-+..+-++.+...++.|+..+..+.+++|.+.+++..|+++|+-++.+- .....+|.+++.
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 33566677778888899999999999999999999999999999887532 122226665543
No 463
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=82.56 E-value=43 Score=34.68 Aligned_cols=87 Identities=11% Similarity=-0.008 Sum_probs=44.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHH----
Q 038852 218 TKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFN---- 293 (851)
Q Consensus 218 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~---- 293 (851)
|.+++..|++.+++...-.....--+.-..+...-|-.|.+.++...+.++-...+..--.-+..-|..+++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5566667777776665544443322223344555556666777776666666665544322233334444444332
Q ss_pred -cCCHHHHHHHH
Q 038852 294 -QGKDKEAMQSY 304 (851)
Q Consensus 294 -~g~~~~A~~l~ 304 (851)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 34444444443
No 464
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.41 E-value=2.6 Score=27.54 Aligned_cols=25 Identities=32% Similarity=0.619 Sum_probs=12.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHh
Q 038852 180 NLINTYCDEGKVDEGMNVFRRIIET 204 (851)
Q Consensus 180 ~Li~~~~~~g~~~~A~~l~~~~~~~ 204 (851)
.++.++.+.|++++|+++|+++++.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3444444555555555555555444
No 465
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=82.36 E-value=42 Score=34.72 Aligned_cols=126 Identities=9% Similarity=-0.009 Sum_probs=73.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccc
Q 038852 398 YNNIIARYCENEMLEEAEKLLREISTKS-----LSPDVT--------TFRTLIDAYLKVERIDDALELFNRMVESGLRVV 464 (851)
Q Consensus 398 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~pd~~--------~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~ 464 (851)
.....+.+.-..||..|++..++-.+.= .+.+.. ....=|.+++..+++.+++.+.-.....--+..
T Consensus 38 Le~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklP 117 (309)
T PF07163_consen 38 LEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLP 117 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCC
Confidence 3344445555778888888877654420 111110 112235677777888887776655554433334
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-----hcCChHHHHHHH
Q 038852 465 VSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLC-----NEGLFDMSKDIV 523 (851)
Q Consensus 465 ~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~-----~~g~~~~A~~~~ 523 (851)
..+...-|..|.+.+....+.++-...+..--.-+...|..++..|. =.|.+++|+++.
T Consensus 118 pkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 118 PKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 44555566677888888887777777665432223344666555543 367778777766
No 466
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=82.31 E-value=21 Score=39.47 Aligned_cols=58 Identities=10% Similarity=0.099 Sum_probs=32.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--HcCChhHHHHHHHHHHH
Q 038852 109 NRVQSLIRAGDLDAASYLARQAVFSRIRPTVF--TCNAIIAAMY--RAKRYDDAVALFKYFFD 167 (851)
Q Consensus 109 ~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~--~~~~li~~~~--~~g~~~~A~~l~~~~~~ 167 (851)
..+..+.+.++|..|..+++.+... +..+.. .+..|..+|. ..-++++|.+.|+..+.
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4455666677777777777766654 333222 3444444443 34556666666666543
No 467
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.14 E-value=15 Score=36.19 Aligned_cols=75 Identities=16% Similarity=0.185 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHH
Q 038852 298 KEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEA 375 (851)
Q Consensus 298 ~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A 375 (851)
+.|++.|-.+...+.-.++.....|+..|. ..+.++++.++.++++....- ..+|.+++..|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~--~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPD--DNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444444443334444444444443 456666666666666532211 122666666666666666666655
No 468
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.76 E-value=1.5e+02 Score=37.03 Aligned_cols=76 Identities=13% Similarity=0.112 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----C---CCHHH----HHHHHHHHHHcCCCCCCCccCHHHHHHHH
Q 038852 295 GKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLK----H---EKKEE----AQALFEQMLDNHQPPNIQAVNSDTFNIMV 363 (851)
Q Consensus 295 g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~----~---g~~~~----A~~l~~~m~~~~~~p~~~~~~~~~~~~L~ 363 (851)
=.++.|...+++|+..-...+...+..+..+|.. . +...+ |..++..+....+. +...+..++
T Consensus 571 F~I~gae~~irkMl~LVWskd~~i~e~v~~ayk~l~~~~~~n~~~~e~~~ia~NL~~l~~~~s~~------d~~slE~vl 644 (1251)
T KOG0414|consen 571 FGIDGAEFGIRKMLPLVWSKDKEIREAVENAYKQLYFRPDGNSKASEASSIAQNLSKLLIDASIG------DLTSLEEVL 644 (1251)
T ss_pred hCCCcHHHHHHHHhhhhhCCCccHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHhccccc------chhhHHHHH
Confidence 3455666666666655444444455555555532 2 22223 34444444433222 455666777
Q ss_pred HHHHHcCChHHHH
Q 038852 364 NECFKHGKFSEAI 376 (851)
Q Consensus 364 ~~~~~~g~~~~A~ 376 (851)
..+...|.++.+.
T Consensus 645 ~~lv~~~~Id~~V 657 (1251)
T KOG0414|consen 645 CELVARGYIDAAV 657 (1251)
T ss_pred HHHHhCCCccHHH
Confidence 7777777776653
No 469
>PRK14700 recombination factor protein RarA; Provisional
Probab=81.54 E-value=75 Score=33.50 Aligned_cols=46 Identities=15% Similarity=0.100 Sum_probs=30.7
Q ss_pred HHHHHHH---hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 038852 400 NIIARYC---ENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVER 445 (851)
Q Consensus 400 ~li~~~~---~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~ 445 (851)
.+|.++. +-.|.|.|+-++.+|++.|..|....-..++.++...|.
T Consensus 128 d~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGl 176 (300)
T PRK14700 128 EQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGN 176 (300)
T ss_pred HHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 3445544 356788888888888888777666666666666655553
No 470
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=81.53 E-value=3.6 Score=27.19 Aligned_cols=28 Identities=25% Similarity=0.462 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 038852 432 TFRTLIDAYLKVERIDDALELFNRMVES 459 (851)
Q Consensus 432 ~~~~Ll~~~~~~g~~~~A~~~~~~m~~~ 459 (851)
+|..++.+|...|++++|++.|+++++.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4566666777777777777777766654
No 471
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.09 E-value=17 Score=38.05 Aligned_cols=49 Identities=10% Similarity=0.074 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 038852 445 RIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGE 493 (851)
Q Consensus 445 ~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~ 493 (851)
+.++++.++..=+..|+-++..+++.+++.+.+.+++.+|..+...|+.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555555443
No 472
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=80.81 E-value=77 Score=33.17 Aligned_cols=277 Identities=15% Similarity=0.203 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHH
Q 038852 135 IRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTY 214 (851)
Q Consensus 135 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~ 214 (851)
+.+.+..++.||+ ++.--++.|+.-+++ +...+.++....+..-| +|..+.-.+|..|-...-
T Consensus 107 i~~~~qvf~KliR------RykyLeK~fE~e~~k---------~Llflk~F~e~Er~KLA--~~Tal~l~nGt~~~tvl~ 169 (412)
T KOG2297|consen 107 IRNSVQVFQKLIR------RYKYLEKNFENEMRK---------FLLFLKLFEENERKKLA--MLTALLLSNGTLPATVLQ 169 (412)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHH---------HHHHHHccCHHHHHHHH--HHHHHHHhCCCCCHHHHH
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHH
Q 038852 215 RHLTKGFVDAG-RIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFN 293 (851)
Q Consensus 215 ~~Li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~ 293 (851)
..+-..+++.| -..-|.++|...+ .....+.++..+.+.+.-++-+++| .++..+...+...+..
T Consensus 170 ~L~~d~LVkeGi~l~F~~~lFk~~~------~Ek~i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E~Fak~Ft~ 235 (412)
T KOG2297|consen 170 SLLNDNLVKEGIALSFAVKLFKEWL------VEKDINDLISSLRKGKMDDRLMEFF--------PPNKRSVEHFAKYFTD 235 (412)
T ss_pred HHHHhhHHHHhHHHHHHHHHHHHHH------hhccHHHHHHHHHhcChHhHHHHhc--------CCcchhHHHHHHHHhH
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChH
Q 038852 294 QGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFS 373 (851)
Q Consensus 294 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~ 373 (851)
.|--+...-.-..+.....+ ..-..|..-..+...+++.+...++-.+....| +..+...+-.+......|.
T Consensus 236 agL~elvey~~~q~~~~a~k---Elq~~L~~q~s~e~p~~evi~~VKee~k~~nlP-----e~eVi~ivWs~iMsaveWn 307 (412)
T KOG2297|consen 236 AGLKELVEYHRNQQSEGARK---ELQKELQEQVSEEDPVKEVILYVKEEMKRNNLP-----ETEVIGIVWSGIMSAVEWN 307 (412)
T ss_pred hhHHHHHHHHHHHHHHHHHH---HHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCC-----CceEEeeeHhhhhHHHhhc
Q ss_pred HHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHH---------------HHHHHHHhCCCCCCHHHHHHHHH
Q 038852 374 EAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAE---------------KLLREISTKSLSPDVTTFRTLID 438 (851)
Q Consensus 374 ~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~---------------~l~~~m~~~g~~pd~~~~~~Ll~ 438 (851)
+-.++..+..-. ....|.-|+.+++..|+.+..+ +.|.+++..-.+.|+.+-..++.
T Consensus 308 Kkeelva~qalr--------hlK~yaPLL~af~s~g~sEL~Ll~KvQe~CYen~~fMKaFqkiV~lfYk~dVLsEe~IL~ 379 (412)
T KOG2297|consen 308 KKEELVAEQALR--------HLKQYAPLLAAFCSQGQSELELLLKVQEYCYENIHFMKAFQKIVVLFYKADVLSEETILK 379 (412)
T ss_pred hHHHHHHHHHHH--------HHHhhhHHHHHHhcCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 038852 439 AYLKVERIDDALELFNRMVE 458 (851)
Q Consensus 439 ~~~~~g~~~~A~~~~~~m~~ 458 (851)
-|.+......-..+++.|..
T Consensus 380 Wyk~gh~~KGk~~Fleqmkk 399 (412)
T KOG2297|consen 380 WYKEGHVAKGKSVFLEQMKK 399 (412)
T ss_pred HHHhccccccHHHHHHHHHH
No 473
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=80.78 E-value=18 Score=30.79 Aligned_cols=62 Identities=23% Similarity=0.325 Sum_probs=29.7
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCC
Q 038852 198 FRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGA-DSLVYNNLISGFLNLGN 261 (851)
Q Consensus 198 ~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~Li~~~~~~g~ 261 (851)
++..++.+|. |......+...+...|++++|++.|-++++..... +...-..|+.++...|.
T Consensus 11 l~~~~a~~P~--D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 11 LEAALAANPD--DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHSTT---HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHcCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 3344444444 55555566666666666666666666665543221 23344444444444444
No 474
>PRK10941 hypothetical protein; Provisional
Probab=80.64 E-value=21 Score=37.33 Aligned_cols=74 Identities=14% Similarity=0.133 Sum_probs=35.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038852 143 NAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLT 218 (851)
Q Consensus 143 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li 218 (851)
+.|-.+|.+.++++.|+++.+.++...+ .|..-+.-.+-+|.+.|.+..|..-++..++..|..|+.......+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P--~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDP--EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 3344444555555555555555544322 1233344444445555555555555555555555544444433333
No 475
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=80.60 E-value=9.5 Score=32.66 Aligned_cols=69 Identities=12% Similarity=0.068 Sum_probs=44.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC---CC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHH
Q 038852 112 QSLIRAGDLDAASYLARQAVFSRIR---PT-----VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNN 180 (851)
Q Consensus 112 ~~l~~~g~~~~A~~l~~~~~~~~~~---~~-----~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~ 180 (851)
...++.|++.+|.+.+.+....... .. ......+...+...|++++|+..++++++.....-|..+...
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~ 82 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAY 82 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 3457889999997777665543221 11 223334555667889999999999998765433345444433
No 476
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.60 E-value=22 Score=30.36 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038852 227 IGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 227 ~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~ 275 (851)
.-++.+-++.+...++.|+..+..+.+++|.+.+|+..|.++|+-++.+
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3455666677777777788888888888888888888888888877644
No 477
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=80.56 E-value=0.49 Score=57.58 Aligned_cols=11 Identities=55% Similarity=0.350 Sum_probs=4.9
Q ss_pred ccccccccccc
Q 038852 612 QMEGQQHFGSY 622 (851)
Q Consensus 612 ~~~~~~~~~~~ 622 (851)
+|.++|++-|+
T Consensus 1946 q~~~qQ~~~sq 1956 (2220)
T KOG3598|consen 1946 QMRGQQPPMSQ 1956 (2220)
T ss_pred HHhccCccccc
Confidence 34455544443
No 478
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=80.51 E-value=45 Score=30.32 Aligned_cols=43 Identities=9% Similarity=0.213 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038852 413 EAEKLLREISTKSLSPD-VTTFRTLIDAYLKVERIDDALELFNR 455 (851)
Q Consensus 413 ~A~~l~~~m~~~g~~pd-~~~~~~Ll~~~~~~g~~~~A~~~~~~ 455 (851)
++.++|..|...|+-.. +..|...+..+...|++++|.++|..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 55555555554443322 33444444555555555555555543
No 479
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=80.30 E-value=70 Score=32.74 Aligned_cols=40 Identities=13% Similarity=0.197 Sum_probs=17.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038852 181 LINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGF 221 (851)
Q Consensus 181 Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~ 221 (851)
++..+...|+++++++++.++.+.+ ...+..-.+.|..+|
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~-~eLt~eERnLlsvay 46 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMN-PELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTS-S---HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccC-CCCCHHHHHHHHHHH
Confidence 4444555555555555555555543 223333334343333
No 480
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=79.61 E-value=1.8e+02 Score=36.55 Aligned_cols=122 Identities=7% Similarity=-0.010 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 038852 429 DVTTFRTLIDAYLKVERIDD-ALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVV 507 (851)
Q Consensus 429 d~~~~~~Ll~~~~~~g~~~~-A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll 507 (851)
+..+-...+.++...+..+. +...+..+.... +..+-...+.++...|+...+...+..+++. +|..+-...+
T Consensus 755 ~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~---d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa 828 (897)
T PRK13800 755 NREVRIAVAKGLATLGAGGAPAGDAVRALTGDP---DPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGAA 828 (897)
T ss_pred CHHHHHHHHHHHHHhccccchhHHHHHHHhcCC---CHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHH
Confidence 44444555555555544332 233344443321 2333344556666666654443444444432 2444444455
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 038852 508 RGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNA 560 (851)
Q Consensus 508 ~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~ 560 (851)
.++.+.+. +++...+..+++ .++..+....+.++.+.+.-..+...+..
T Consensus 829 ~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~ 877 (897)
T PRK13800 829 RALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTT 877 (897)
T ss_pred HHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 55655554 344455544443 24555666666666654323334444433
No 481
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=79.17 E-value=75 Score=32.05 Aligned_cols=140 Identities=13% Similarity=0.171 Sum_probs=77.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHH
Q 038852 214 YRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFN 293 (851)
Q Consensus 214 ~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~ 293 (851)
....+..|...-+|..|-..++++++- ...- ..+--|.+..+..--.++.+-....++..+..-...++ +..
T Consensus 133 lRRtMEiyS~ttRFalaCN~s~KIiEP-----IQSR-CAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta 204 (333)
T KOG0991|consen 133 LRRTMEIYSNTTRFALACNQSEKIIEP-----IQSR-CAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTA 204 (333)
T ss_pred HHHHHHHHcccchhhhhhcchhhhhhh-----HHhh-hHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhc
Confidence 334455566666666666655555531 1111 12223444444444444444444445544444444333 456
Q ss_pred cCCHHHHHHHHHHHHHh------------cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHH
Q 038852 294 QGKDKEAMQSYKSLMER------------NFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNI 361 (851)
Q Consensus 294 ~g~~~~A~~l~~~~~~~------------~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~ 361 (851)
.||...|+..+...... --.|.+.....++..| ..+++++|.+++.++-+.|..| .+..+.
T Consensus 205 ~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp------~Dii~~ 277 (333)
T KOG0991|consen 205 QGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSP------EDIITT 277 (333)
T ss_pred cchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCH------HHHHHH
Confidence 77777777776654321 1234555555566654 4578999999999999988876 345555
Q ss_pred HHHHHHH
Q 038852 362 MVNECFK 368 (851)
Q Consensus 362 L~~~~~~ 368 (851)
+.+++-.
T Consensus 278 ~FRv~K~ 284 (333)
T KOG0991|consen 278 LFRVVKN 284 (333)
T ss_pred HHHHHHh
Confidence 5555433
No 482
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=78.94 E-value=3.7 Score=29.52 Aligned_cols=24 Identities=8% Similarity=0.374 Sum_probs=18.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc
Q 038852 506 VVRGLCNEGLFDMSKDIVDQMMKY 529 (851)
Q Consensus 506 ll~a~~~~g~~~~A~~~~~~m~~~ 529 (851)
|.++|...|+.+.|++++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 667778888888888888877754
No 483
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=78.66 E-value=72 Score=31.52 Aligned_cols=30 Identities=7% Similarity=0.077 Sum_probs=15.0
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 038852 419 REISTKSLSPDVTTFRTLIDAYLKVERIDD 448 (851)
Q Consensus 419 ~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~ 448 (851)
.+|++.+..-....|...+..+....+.++
T Consensus 19 ~~~iK~~~pf~t~lFd~~~~~~~s~q~~ee 48 (205)
T PF12238_consen 19 LDLIKENPPFKTSLFDETVLSNLSGQSDEE 48 (205)
T ss_pred HHHHccCCCCchhhhhHHHHHhcccCCHHH
Confidence 344454555555556555555544444443
No 484
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=78.53 E-value=94 Score=32.83 Aligned_cols=60 Identities=17% Similarity=0.297 Sum_probs=37.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 038852 399 NNIIARYCENEMLEEAEKLLREISTKSLSPDV---TTFRTLIDAYLKVERIDDALELFNRMVESG 460 (851)
Q Consensus 399 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~---~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~ 460 (851)
..|..+-.+.|+..+|.+.|+++.+. + |-. .+...|+.+|.....+.+...++.+.-+..
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke-~-pl~t~lniheNLiEalLE~QAYADvqavLakYDdis 341 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKE-F-PLLTMLNIHENLLEALLELQAYADVQAVLAKYDDIS 341 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhh-c-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 34444555688888888888887654 1 211 233457777777777777666666655443
No 485
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=77.96 E-value=23 Score=30.08 Aligned_cols=66 Identities=21% Similarity=0.227 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcc-chhhHHHHHHHHHHcCCHH
Q 038852 232 DLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVY-DGVVNATFMEWWFNQGKDK 298 (851)
Q Consensus 232 ~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~-d~~~~~~li~~~~~~g~~~ 298 (851)
.-++..++.+.. |......+...+...|++++|++.+-++++.+... +......++.++...|.-+
T Consensus 9 ~al~~~~a~~P~-D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 9 AALEAALAANPD-DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 344455555555 66777778888888888888888888877765443 3445555665555555543
No 486
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=77.89 E-value=1.3e+02 Score=34.27 Aligned_cols=339 Identities=11% Similarity=0.091 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 038852 118 GDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNV 197 (851)
Q Consensus 118 g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l 197 (851)
|+.+.--.++...+..-...|...--.-...+...---++-..+--+|.++.++. ..-.|.+...+|.+.+++..|.+-
T Consensus 531 gkadlLn~Ll~a~i~hv~SLDdIad~~asecLRdqLie~ErYqlaV~mckKc~iD-~f~aW~AWGlA~Lk~e~~aaAR~K 609 (1141)
T KOG1811|consen 531 GKADLLNILLAAAIRHVPSLDDIADPAASECLRDQLIEAERYQLAVEMCKKCGID-TFGAWHAWGLACLKAENLAAAREK 609 (1141)
T ss_pred hHHHHHHHHHHHHhccCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-cccHHHHHHHHHHHhhhHHHHHHH
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhc-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038852 198 FRRIIETAPVGPSSNTYRHLTKGFVDAG---RIGEAVDLLRDMLSR-----QLGADSLVYNNLISGFLNLGNLEKANELF 269 (851)
Q Consensus 198 ~~~~~~~~~~~p~~~~~~~Li~~~~~~g---~~~~A~~l~~~m~~~-----g~~pd~~~~~~Li~~~~~~g~~~~A~~~~ 269 (851)
|.++.+..+. |+--...=|.-....| ++....++++...+. ........|.+.+......-+.+.....+
T Consensus 610 Fkqafklkge--dipdvi~diin~ieGgpp~dVq~Vrem~dhlak~aptilddSLqaD~Y~~~Lh~~eaf~Rser~r~al 687 (1141)
T KOG1811|consen 610 FKQAFKLKGE--DIPDVIFDIINLIEGGPPRDVQDVREMLDHLAKPAPTILDDSLQADDYFATLHELEAFLRSERLRLAL 687 (1141)
T ss_pred HHHHhCCCCC--ccchHHHHHHHhhcCCCcchHHHHHHHHHHhccCCcccccccccchhHHHHHHhhhhhhhhhhhhhhh
Q ss_pred HHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 038852 270 DELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPP 349 (851)
Q Consensus 270 ~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p 349 (851)
+- +.+...+...|..--+......+|.+.+.++.+ ..-..++.-...+|.+.+|--.| ..+.|+.|
T Consensus 688 e~--E~nk~m~gsdfed~prs~~d~~~YSec~~~iqe----------haR~n~Lg~~f~HghfKdacm~f--F~e~g~pP 753 (1141)
T KOG1811|consen 688 EP--EGNKIMNGSDFEDCPRSLFDLHNYSECLAIIQE----------HARHNCLGEAFLHGHFKDACMEF--FIEGGFPP 753 (1141)
T ss_pred cc--ccCcCCCCcchhhCcHhhhhhhhhHHHHHHHHH----------HHHHHHHHHHHHhhhccccchhh--hhccCCCC
Q ss_pred CCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038852 350 NIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPD 429 (851)
Q Consensus 350 ~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 429 (851)
.. +.|.+.....+++-. ...++.....+...+-..|...|-+..-++++.+..+.-..-|
T Consensus 754 pl----------------ks~klgalen~~ep~----~tdpLase~gtiea~Cefc~g~gaisnleeiitE~le~aKdQd 813 (1141)
T KOG1811|consen 754 PL----------------KSGKLGALENLLEPI----DTDPLASEGGTIEAACEFCQGKGAISNLEEIITELLEFAKDQD 813 (1141)
T ss_pred Cc----------------cccchhhhhhhcCcc----CCCchhhccchHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 038852 430 VTTFRTLIDAYLKVERIDDALELFNRMVES--GLRVVVSFGTKVFNELITKGKVAECAPILTKMGE 493 (851)
Q Consensus 430 ~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~ 493 (851)
......+.-++.+...+-+.-+.|+-+.+. -.+..+..-...+..|...-.-++|.+-++..++
T Consensus 814 qA~~q~Ia~al~k~caffEi~~hfn~L~K~~~~kKdyvtsgycciqiflneTsqeda~khle~akk 879 (1141)
T KOG1811|consen 814 QAAMQCIAFALHKACAFFEIGEHFNWLLKAKDHKKDYVTSGYCCIQIFLNETSQEDARKHLEFAKK 879 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccceeeeehhcccchHHHHHHHHHHHH
No 487
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=77.73 E-value=87 Score=39.41 Aligned_cols=422 Identities=9% Similarity=0.001 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHH----HHHHHHcCChHHHHH
Q 038852 121 DAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNL----INTYCDEGKVDEGMN 196 (851)
Q Consensus 121 ~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~L----i~~~~~~g~~~~A~~ 196 (851)
..+.++.++.+...++.....|..+...+++...+++|+..-.+.+...+...+...=+.. ...+.+.+-.+-+++
T Consensus 689 qk~~d~~Erll~~~iPd~~Ks~~d~sv~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a~~~~v~l~~l~~~ei~~R 768 (1236)
T KOG1839|consen 689 QKVLDINERLLGLDIPDTMKSYGDLSVFPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTAATYINVALMELGVGEIALR 768 (1236)
T ss_pred HhHHHHHHHHhccccchhHHhccccceeeecccHHHHHHHHhhHHHHHhhccccccCccccchhhhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038852 197 VFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRC 276 (851)
Q Consensus 197 l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~ 276 (851)
.+..+++ .+..++......--..-++.++-.....-+..-..+...+-.. ++...+.+. ..
T Consensus 769 slKhvlK---------~~~r~l~~~~i~ta~SH~ln~~ls~~~~av~~~~t~~~~~ka~--~~~~~~~~~--------g~ 829 (1236)
T KOG1839|consen 769 SLKHVLK---------DNLRLLGADHIQTAASHALNCLLSVMEAAVQKEQTTLEILKAK--DLRTQDAAA--------GT 829 (1236)
T ss_pred HHHHHHH---------HHHhhcchhHHHHHHHHHHHHHhhcccccCCCccchHHHHhhh--hhhhhhhcc--------CC
Q ss_pred Cccc--------hhhHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038852 277 LVYD--------GVVNATFMEWWFNQG---KDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDN 345 (851)
Q Consensus 277 ~~~d--------~~~~~~li~~~~~~g---~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 345 (851)
..++ ...-..+-.+....+ .+....+....+..... ..+..+..............+.+..-..
T Consensus 830 ~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~~~~~~~i~~~~r~~~~e~~- 904 (1236)
T KOG1839|consen 830 PKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETILLKNG----KSKIAVEKLEKKKRELQKPARNYDFESS- 904 (1236)
T ss_pred CCcccccccccccchhHHHHhccccccccccchhhhhHHHHHhhhcc----cchhHHHHHHHHhhhcchhhhhcccccc-
Q ss_pred CCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHH------HHH
Q 038852 346 HQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEK------LLR 419 (851)
Q Consensus 346 ~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~------l~~ 419 (851)
..++.+...|.....-++. ...+..-+...+..-.......|.+.+|.+ +++
T Consensus 905 ~~ks~f~~~Di~~~~p~ik----------------------~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~ 962 (1236)
T KOG1839|consen 905 EPKSEFNDSDILNLRPVIK----------------------HSSPTVSEAKDSPEQGQEALLEDGFSEAYELPESLNLLN 962 (1236)
T ss_pred CCCCCCCcccccccccccc----------------------cCCCccchhhhhhhhhhhhhcccchhhhhhhhhhhhHHH
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 038852 420 EISTKSLSPDVTTFRTLIDAYLKVERIDDALEL-------FNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMG 492 (851)
Q Consensus 420 ~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~-------~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~ 492 (851)
.....--......|..|...+.+.++.++|+.+ .+++...+...+..-|..+...+...+....|+..+.+.+
T Consensus 963 ~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~ 1042 (1236)
T KOG1839|consen 963 NVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRAL 1042 (1236)
T ss_pred HhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHH
Q ss_pred hC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHH
Q 038852 493 EK-------DPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITP-------ALQDFVRETFGKAGRGEEIERVL 558 (851)
Q Consensus 493 ~~-------~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~L~~~~~~~G~~~eA~~ll 558 (851)
.. .-.+...+++.+-..+...++++.|+++++.+.+.....-. ..+..+.+.+...+++..|....
T Consensus 1043 ~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1043 KLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred HhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHH
Q ss_pred HhhhhcCCCCCCCCCCCCCCCCCCccccCC
Q 038852 559 NADRWGYAAPVPPPRTSGPPQMTGQQYSGY 588 (851)
Q Consensus 559 ~~~~~~~~~~p~~~~~~~~~~~~~~~ll~a 588 (851)
+.....|.+.-+..-..-.....|..++.+
T Consensus 1123 k~t~~iy~~qlg~~hsrt~~S~~~~~~~T~ 1152 (1236)
T KOG1839|consen 1123 KVTYGIYKEQLGPDHSRTKESSEWLNLSTA 1152 (1236)
T ss_pred hhHHHHHHHhhCCCcccchhhHHHHHHhhH
No 488
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=77.54 E-value=27 Score=35.15 Aligned_cols=26 Identities=12% Similarity=0.095 Sum_probs=14.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC
Q 038852 216 HLTKGFVDAGRIGEAVDLLRDMLSRQ 241 (851)
Q Consensus 216 ~Li~~~~~~g~~~~A~~l~~~m~~~g 241 (851)
.++....+.|++++|.+.|.+++..+
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 44455555666666666666665543
No 489
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=77.53 E-value=47 Score=32.77 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038852 248 VYNNLISGFLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 248 ~~~~Li~~~~~~g~~~~A~~~~~~~~~~ 275 (851)
..+.++..|...||++.|.++|.-+++.
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 4455666666666666666666666654
No 490
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=77.27 E-value=83 Score=32.78 Aligned_cols=96 Identities=11% Similarity=0.092 Sum_probs=56.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhccC-CCCCCCccCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCH-----
Q 038852 360 NIMVNECFKHGKFSEAIETFKKAGTH-PKSKPFAMDVAG--YNNIIARYCENEMLEEAEKLLREISTKSLS-PDV----- 430 (851)
Q Consensus 360 ~~L~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~d~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~----- 430 (851)
..|...+..+|+++.|.+++-..... ... +..+... ...-++.|.-.+|+-.|--+.+++.+.-++ +|.
T Consensus 135 ~~L~~ikee~Gdi~sA~Dilcn~pVETygs--~~~Sekv~fiLEQ~rL~vl~~Dy~~A~~~~kKI~KK~Fe~~d~~slKl 212 (439)
T COG5071 135 QLLSQIKEEQGDIKSAQDILCNEPVETYGS--FDLSEKVAFILEQVRLFLLRSDYYMASTYTKKINKKFFEKEDVQSLKL 212 (439)
T ss_pred HHHHHHHHHhcchhHHHHHHhcCchhhccc--hhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhccccHHHHHH
Confidence 45677888999999999988765211 000 0001111 112245677789999998888887765433 332
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038852 431 TTFRTLIDAYLKVERIDDALELFNRMV 457 (851)
Q Consensus 431 ~~~~~Ll~~~~~~g~~~~A~~~~~~m~ 457 (851)
..|+.++..-.....+-++..+|..+.
T Consensus 213 kyYeL~V~i~Lh~R~Yl~v~~y~~~vY 239 (439)
T COG5071 213 KYYELKVRIGLHDRAYLDVCKYYRAVY 239 (439)
T ss_pred HHHHHhheeecccHHHHHHHHHHHHHH
Confidence 245555555444555666665555544
No 491
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.02 E-value=1.4e+02 Score=33.98 Aligned_cols=144 Identities=12% Similarity=-0.022 Sum_probs=66.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC-----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCCCHHHHHH
Q 038852 108 HNRVQSLIRAGDLDAASYLARQAVFSR-IRP-----TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQAD-IVPNIVSYNN 180 (851)
Q Consensus 108 ~~ll~~l~~~g~~~~A~~l~~~~~~~~-~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-~~pd~~~~~~ 180 (851)
..++...-..|+-+++...+....... +.. -...|+.++..+...+..+. +...+.++.... ..++..-...
T Consensus 194 ~~~l~vvgf~g~r~egl~~Lw~~a~~~s~~~~i~~l~L~~y~~~~~~~~~~p~~d~-~~~~~~Ll~~~~~~p~ga~wll~ 272 (546)
T KOG3783|consen 194 LRLLSVVGFSGDRDEGLRLLWEAAKQRNFRGAIALLALLCYYQFISFVLGTPNPDG-EECEKALKKYRKRYPKGALWLLM 272 (546)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHcCCCCccH-HHHHHHhHHHHHhCCCCccHHHH
Confidence 344455555666666655444433222 100 01234444444444444333 222332222111 2233333334
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 181 LINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 181 Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
-...+...|+.+.|+.+++.+++..-...-...+-.++-+++-..++..|...++.+.+..-- ...+|.-+.
T Consensus 273 ~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdW-S~a~Y~Yfa 344 (546)
T KOG3783|consen 273 EARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDW-SHAFYTYFA 344 (546)
T ss_pred HHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhh-hHHHHHHHH
Confidence 455566677777777777766441000001112333444555566788888888777765322 334455444
No 492
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.71 E-value=1.2e+02 Score=33.25 Aligned_cols=26 Identities=12% Similarity=0.047 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038852 432 TFRTLIDAYLKVERIDDALELFNRMV 457 (851)
Q Consensus 432 ~~~~Ll~~~~~~g~~~~A~~~~~~m~ 457 (851)
-+..-+..|++.|.-..|+.++++-.
T Consensus 258 ~~~~~~r~~~k~g~K~iA~~ylr~rk 283 (439)
T KOG2911|consen 258 KSKEKLRQALKEGKKQIAITYLRARK 283 (439)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 35556668888888888888776543
No 493
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=76.56 E-value=57 Score=33.93 Aligned_cols=97 Identities=8% Similarity=0.096 Sum_probs=48.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcC---CCCHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CCCccCHHH
Q 038852 285 ATFMEWWFNQGKDKEAMQSYKSLMERNF---RMTPAT--CNTLLEVLLKHEKKEEAQALFEQMLDNHQPP-NIQAVNSDT 358 (851)
Q Consensus 285 ~~li~~~~~~g~~~~A~~l~~~~~~~~~---~~~~~~--~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p-~~~~~~~~~ 358 (851)
..|...+..+|+.+.|.+++-..--... +.+..+ ...-++.+...+|+-.|--+.+++.++-+.- +........
T Consensus 135 ~~L~~ikee~Gdi~sA~Dilcn~pVETygs~~~Sekv~fiLEQ~rL~vl~~Dy~~A~~~~kKI~KK~Fe~~d~~slKlky 214 (439)
T COG5071 135 QLLSQIKEEQGDIKSAQDILCNEPVETYGSFDLSEKVAFILEQVRLFLLRSDYYMASTYTKKINKKFFEKEDVQSLKLKY 214 (439)
T ss_pred HHHHHHHHHhcchhHHHHHHhcCchhhccchhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 3455667777888888777643221100 000000 0112456677788888887777777654432 111112233
Q ss_pred HHHHHHHHHHcCChHHHHHHHHH
Q 038852 359 FNIMVNECFKHGKFSEAIETFKK 381 (851)
Q Consensus 359 ~~~L~~~~~~~g~~~~A~~~~~~ 381 (851)
|..+...-.....+-++-.+++.
T Consensus 215 YeL~V~i~Lh~R~Yl~v~~y~~~ 237 (439)
T COG5071 215 YELKVRIGLHDRAYLDVCKYYRA 237 (439)
T ss_pred HHHhheeecccHHHHHHHHHHHH
Confidence 44444444444445555544433
No 494
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=76.55 E-value=1.4e+02 Score=33.83 Aligned_cols=183 Identities=14% Similarity=0.098 Sum_probs=84.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcC---ChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHh
Q 038852 331 KKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHG---KFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCE 407 (851)
Q Consensus 331 ~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~ 407 (851)
+.++.++.+++.+-.... +..+-..|+.+....+ ..+-|+.++.........+. ...+...+..+|.
T Consensus 410 N~d~gl~~Ldkyly~de~------~~KaGaLLGig~s~~~v~~E~~palalLs~yl~s~s~k~---~~aaiLGlg~afs- 479 (881)
T COG5110 410 NSDKGLETLDKYLYADES------YRKAGALLGIGLSGLRVFEERPPALALLSNYLQSSSSKH---VIAAILGLGAAFS- 479 (881)
T ss_pred hhHhhHHHHHHHHhcCcc------cccccceeeeeecccccccccchHHHHHHHhccCCchHH---HHHHHhhhHHhhc-
Confidence 456677777776643221 1222222333333333 44556666666554432211 1122222222222
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHcCC-ccchhHHHHHHHHH--HHcCCH
Q 038852 408 NEMLEEAEKLLREISTKSLSP-DVTTF--RTLIDAYLKVERIDDALELFNRMVESGL-RVVVSFGTKVFNEL--ITKGKV 481 (851)
Q Consensus 408 ~g~~~~A~~l~~~m~~~g~~p-d~~~~--~~Ll~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~L~~~~--~~~g~~ 481 (851)
-.+-++.++++.-+....-.| ....+ .+|+..++..-+-+-+-.+++...+++- .....|+..++.++ .-.|+-
T Consensus 480 Gt~~eevl~lL~Pi~~std~pie~~~~asltLg~vFvGtcngD~ts~ilqtf~Er~~~e~~tqw~RFlaLgLa~Lf~g~~ 559 (881)
T COG5110 480 GTQAEEVLELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCNGDLTSLILQTFVERGKIESETQWFRFLALGLASLFYGRK 559 (881)
T ss_pred CCcHHHHHHHhhhhhcCCCCcHHHHHHHHHhhhheEeeccCchHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHcccc
Confidence 224566666666554332112 22223 3445555555566677777887777653 44555555444333 345665
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh--cCChHHHHHHHH
Q 038852 482 AECAPILTKMGEKDPKPDFLIYDVVVRGLCN--EGLFDMSKDIVD 524 (851)
Q Consensus 482 ~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~--~g~~~~A~~~~~ 524 (851)
+.+-.+.+.+...+-. -...-..|+.+|.. .|+.--...++.
T Consensus 560 d~~d~v~eti~aIeg~-ls~~~eiLv~~c~Y~GTGdvl~Iq~lLh 603 (881)
T COG5110 560 DQVDDVEETIMAIEGA-LSKHEEILVKGCQYVGTGDVLVIQSLLH 603 (881)
T ss_pred chhHHHHHHHHHhcch-hhhhHHHHHhhceecccCcHHHHHHHHh
Confidence 5555555554443222 12233445665543 455444444433
No 495
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=76.15 E-value=32 Score=35.20 Aligned_cols=61 Identities=16% Similarity=0.206 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHh
Q 038852 214 YRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLN-LGNLEKANELFDELKQ 274 (851)
Q Consensus 214 ~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~-~g~~~~A~~~~~~~~~ 274 (851)
+..+++.+-..+++++++++++++.+.+...+..-.+.|..+|-. .|....+.+++..+..
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 345677788889999999999999988777777666666666632 3444555555555443
No 496
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=76.02 E-value=1.6e+02 Score=35.77 Aligned_cols=173 Identities=14% Similarity=0.068 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCH------HHHHH
Q 038852 296 KDKEAMQSYKSLME--------RNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNS------DTFNI 361 (851)
Q Consensus 296 ~~~~A~~l~~~~~~--------~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~------~~~~~ 361 (851)
+.++...+++.+.+ .++..+..+...|+... .|+..+++.+++.+............+. .....
T Consensus 169 s~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~ 246 (725)
T PRK13341 169 SDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLIDITLAIAEESIQQ 246 (725)
T ss_pred CHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHHH
Q ss_pred HHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038852 362 MVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYL 441 (851)
Q Consensus 362 L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~ 441 (851)
....|.+.|+. .......+++.+.. +|.+.|+..+.+|++.|..|....-..++.+..
T Consensus 247 ~~~~ydk~gd~---------------------hyd~Isa~~ksirg-sD~daAl~~la~ml~~Gedp~~I~Rrl~~~asE 304 (725)
T PRK13341 247 RAVLYDKEGDA---------------------HFDTISAFIKSLRG-SDPDAALYWLARMVEAGEDPRFIFRRMLIAASE 304 (725)
T ss_pred hhhhcccCCCC---------------------CHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q ss_pred HcC-----CHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 038852 442 KVE-----RIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGE 493 (851)
Q Consensus 442 ~~g-----~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~ 493 (851)
..| ....|...+......|+.-.......+...++..-+-..+ ..+.++.+
T Consensus 305 digladp~al~~~~~~~~a~~~~g~pE~~~~laq~~~~la~apKSns~-~a~~~a~~ 360 (725)
T PRK13341 305 DVGLADPQALVVVEACAAAFERVGLPEGLYPLAQAALYLATAPKSNSV-LGFFDALK 360 (725)
T ss_pred ccCCCChHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHcCCCccHH-HHHHHHHH
No 497
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=75.85 E-value=1.4e+02 Score=33.25 Aligned_cols=283 Identities=11% Similarity=0.089 Sum_probs=0.0
Q ss_pred HcCChhHHHHHHHHHHHcCCCCC------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038852 151 RAKRYDDAVALFKYFFDQADIVP------------NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLT 218 (851)
Q Consensus 151 ~~g~~~~A~~l~~~~~~~~~~~p------------d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li 218 (851)
+...|+.=.++|+.++...+... |...|-.=--+-.+..-..+..+-.+.+.+.++..=+...-..++
T Consensus 3 R~~Sw~nYc~LF~~iL~s~~p~~l~LPn~WlwDiiDEFvYQfqsfc~yr~~~~~~~~~e~~~l~~~~~~~W~~~~VLnvL 82 (404)
T PF10255_consen 3 RFESWDNYCELFNYILNSDGPVNLELPNQWLWDIIDEFVYQFQSFCQYRSKLKKKTEEEIQLLKENNPDVWNVYSVLNVL 82 (404)
T ss_pred hHHHHHHHHHHHHHHhCCCCCcccCCCcHHHHHHHHHHHHHhhhHHHHhhhccCCCHHHHHHHHhhccCcccHHHHHHHH
Q ss_pred HHHHHcCCHHHHHHHHHH-----HHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHH-------HhcCCcc
Q 038852 219 KGFVDAGRIGEAVDLLRD-----MLSRQLGADS-------LVYNNLISGFLNLGNLEKANELFDEL-------KQRCLVY 279 (851)
Q Consensus 219 ~~~~~~g~~~~A~~l~~~-----m~~~g~~pd~-------~~~~~Li~~~~~~g~~~~A~~~~~~~-------~~~~~~~ 279 (851)
..++...++.+.++..+. ....+..... .+...|++..+-.||+..|+++++.+ ..+-...
T Consensus 83 ~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~ 162 (404)
T PF10255_consen 83 YSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPAC 162 (404)
T ss_pred HHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcch
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHH
Q 038852 280 DGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLL-EVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDT 358 (851)
Q Consensus 280 d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li-~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~ 358 (851)
...++..++-+|...+++.+|+++|..++ ......- ....+...++...+..++|. .
T Consensus 163 ~is~~YyvGFaylMlrRY~DAir~f~~iL--------~yi~r~k~~~~~~~~q~d~i~K~~eqMy--------------a 220 (404)
T PF10255_consen 163 HISTYYYVGFAYLMLRRYADAIRTFSQIL--------LYIQRTKNQYHQRSYQYDQINKKNEQMY--------------A 220 (404)
T ss_pred heehHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhhhhhccccchhhHHHhHHHHHH--------------H
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 038852 359 FNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPD-VTTFRTLI 437 (851)
Q Consensus 359 ~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~Ll 437 (851)
..++..+++-..--|.....+++- |..-+.. ...|+.+.-.++|...--+-+.|. ...+....
T Consensus 221 LlAic~~l~p~~lde~i~~~lkek---------------y~ek~~k-mq~gd~~~f~elF~~acPKFIsp~~pp~~~~~~ 284 (404)
T PF10255_consen 221 LLAICLSLCPQRLDESISSQLKEK---------------YGEKMEK-MQRGDEEAFEELFSFACPKFISPVSPPDYDGPS 284 (404)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHH---------------HHHHHHH-HHccCHHHHHHHHHhhCCCccCCCCCCCccccc
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHH
Q 038852 438 DAYLKVERIDDALELFNRMVESGLRVVVSFGTKV 471 (851)
Q Consensus 438 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L 471 (851)
.............-+++++...-.-+....|..|
T Consensus 285 ~~~~~e~~~~Ql~~Fl~eV~~q~~l~~lRSyLKL 318 (404)
T PF10255_consen 285 QNKNKEPYRRQLKLFLDEVKQQQKLPTLRSYLKL 318 (404)
T ss_pred chhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHh
No 498
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=75.78 E-value=1.9e+02 Score=34.78 Aligned_cols=302 Identities=9% Similarity=0.059 Sum_probs=0.0
Q ss_pred CCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------C
Q 038852 171 IVPNIVSYNN-LINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSR--------Q 241 (851)
Q Consensus 171 ~~pd~~~~~~-Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~--------g 241 (851)
..++...... |..+.....-...+..-+...+..+.. .+..| +....++|.|+.-|..+++. .
T Consensus 13 ~~~~~~~L~~~i~~~~~~~~a~~~~~~qi~~Wi~k~k~-----~l~~L---~~~l~~ID~ai~~~l~lIe~~v~~ie~~q 84 (683)
T PF08580_consen 13 LLPIALYLSESIPTAFNAVKALSGAAEQILDWIQKAKD-----VLYGL---REGLEEIDSAISRFLDLIEVYVSAIEDLQ 84 (683)
T ss_pred ccchHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHH-----HHHHH---HHhHHHHHHHHHHHHHHHHhhcccccccc
Q ss_pred CCCCHHH-HHHHHHHHHhcCC-HHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHH
Q 038852 242 LGADSLV-YNNLISGFLNLGN-LEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATC 319 (851)
Q Consensus 242 ~~pd~~~-~~~Li~~~~~~g~-~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~ 319 (851)
...|... ...++..|..... ++.-+..+++.++..+. ...+|+.+|.... ..+++..+++-+|.+..+..-.
T Consensus 85 ~r~di~~~~~dl~e~vsqm~~~vK~~L~~vK~qveiAmE-~~EL~~~vlg~l~--~EIe~~~~~vfemeE~R~~Sp~--- 158 (683)
T PF08580_consen 85 LREDIANSLFDLIEEVSQMELDVKKTLISVKKQVEIAME-WEELWNDVLGDLD--NEIEECIRLVFEMEEKRHSSPV--- 158 (683)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHccCCc---
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHH-------HHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCc
Q 038852 320 NTLLEVLLKHEKKEEAQALFEQM-------LDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFA 392 (851)
Q Consensus 320 ~~Li~~~~~~g~~~~A~~l~~~m-------~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 392 (851)
...-+.-+-..+.++| ...--.|.+...|...|..++..+.+..=++..++++=.=++........
T Consensus 159 -------~~~lp~~~Le~Ive~~~~~~~~~~~~~~lPtF~~~Desl~~~ll~L~arm~PLraSLdfLP~Ri~~F~~ra~~ 231 (683)
T PF08580_consen 159 -------RHGLPIFELETIVEEMPSSTNSSNKRFSLPTFSPQDESLYSSLLALFARMQPLRASLDFLPMRIEEFQSRAES 231 (683)
T ss_pred -------ccCCCcccHHHHHHhccccCCCCcCCcCCCCCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHc-----CCccc
Q 038852 393 MDVAGYNNIIARYCE-NEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLK--VERIDDALELFNRMVES-----GLRVV 464 (851)
Q Consensus 393 ~d~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~--~g~~~~A~~~~~~m~~~-----~~~~~ 464 (851)
.-......|..-|.. .++|+.-..-++.+.+. .-..-|+.+...+.+ .+.++..++.+.++.+. .....
T Consensus 232 ~fp~a~e~L~~r~~~L~~k~~~L~~e~~~LK~E---LiedRW~~vFr~l~~q~~~m~esver~~~kl~~~~~~~~~~~~~ 308 (683)
T PF08580_consen 232 IFPSACEELEDRYERLEKKWKKLEKEAESLKKE---LIEDRWNIVFRNLGRQAQKMCESVERSLSKLQEAIDSGIHLDNP 308 (683)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccch
Q ss_pred hhHHHHHHHHHHHcCCHHHHH--HHHHHHhhCCC
Q 038852 465 VSFGTKVFNELITKGKVAECA--PILTKMGEKDP 496 (851)
Q Consensus 465 ~~~~~~L~~~~~~~g~~~~A~--~ll~~m~~~~~ 496 (851)
..+-..+...+.+..++-.|+ +....+++.|+
T Consensus 309 ~~l~~~i~s~~~k~~~~~~~I~ka~~~sIi~~gv 342 (683)
T PF08580_consen 309 SKLSKQIESKEKKKSHYFPAIYKARVLSIIDKGV 342 (683)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHhhhhhH
No 499
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=75.68 E-value=1.6e+02 Score=35.12 Aligned_cols=164 Identities=7% Similarity=0.015 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------------CC
Q 038852 141 TCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAP------------VG 208 (851)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~------------~~ 208 (851)
+....+..-.+.=..++..+.+..+++..++.-+...+..|+... .|+...|+.++++++..+. ..
T Consensus 166 IrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~ 243 (709)
T PRK08691 166 VLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGA 243 (709)
T ss_pred HHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcc
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-----------cCCHHHHHHHHHHHHhcCC
Q 038852 209 PSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLN-----------LGNLEKANELFDELKQRCL 277 (851)
Q Consensus 209 p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~-----------~g~~~~A~~~~~~~~~~~~ 277 (851)
.+......|+.++.. ++..+++++++++.+.|+. -......|+..+.. ..+..+...+.+.......
T Consensus 244 ~d~~~If~LldAL~~-~d~~~al~~l~~L~~~G~d-~~~~l~~L~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 321 (709)
T PRK08691 244 VDKQYLYELLTGIIN-QDGAALLAKAQEMAACAVG-FDNALGELAILLQQLALIQAVPSALAHDDPDSDILHRLAQTISG 321 (709)
T ss_pred cCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHhhcCchhccccchHHHHHHHHHHcCCH
Q ss_pred ccchhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038852 278 VYDGVVNATFMEWWFNQGKDKEAMQSYKSLM 308 (851)
Q Consensus 278 ~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~ 308 (851)
..-...|..++.+...........-.|+.++
T Consensus 322 ~~l~~~~q~~l~~~~~l~~a~~~~~~~Em~l 352 (709)
T PRK08691 322 EQIQLYYQIAVHGKRDLSLAPDEYAGFMMTL 352 (709)
T ss_pred HHHHHHHHHHHHHHHHhccCCCHHHHHHHHH
No 500
>PF15469 Sec5: Exocyst complex component Sec5
Probab=75.64 E-value=62 Score=31.52 Aligned_cols=169 Identities=12% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH------HHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 038852 234 LRDMLSRQLGADSLVYNNLISGFLNLGNLEKA------NELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSL 307 (851)
Q Consensus 234 ~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A------~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~ 307 (851)
+..+++.++.--..+-.++-..|......... ..-++..+.....-...++..++..-.+..++..++.++++.
T Consensus 4 lk~LV~~Nf~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l~r~ 83 (182)
T PF15469_consen 4 LKSLVKENFDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNEASSKANSVFKPLLERREKADKLRNALEFLQRN 83 (182)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Q ss_pred HHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHH-HHHHHcCChHHHHHHHHHhccCC
Q 038852 308 MERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMV-NECFKHGKFSEAIETFKKAGTHP 386 (851)
Q Consensus 308 ~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~-~~~~~~g~~~~A~~~~~~~~~~~ 386 (851)
.-. ...-.-+.-+.+.|+++.++..|.++.. .|.... ..-.-..-++++..+...+
T Consensus 84 ~fl------F~LP~~L~~~i~~~dy~~~i~dY~kak~-------------l~~~~~~~~~vf~~v~~eve~ii~~~---- 140 (182)
T PF15469_consen 84 RFL------FNLPSNLRECIKKGDYDQAINDYKKAKS-------------LFEKYKQQVPVFQKVWSEVEKIIEEF---- 140 (182)
T ss_pred HHH------HHhHHHHHHHHHcCcHHHHHHHHHHHHH-------------HHHHhhhhHHHHHHHHHHHHHHHHHH----
Q ss_pred CCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038852 387 KSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRT 435 (851)
Q Consensus 387 ~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~ 435 (851)
-...|..|...- ...++..++++.+.+.+...|...+..
T Consensus 141 -------r~~l~~~L~~~~---~s~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 141 -------REKLWEKLLSPP---SSQEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred -------HHHHHHHHhCCC---CCHHHHHHHHHHHHhCCCCCCHHHHHH
Done!