Query 038852
Match_columns 851
No_of_seqs 1328 out of 3406
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 06:00:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038852.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038852hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.1E-38 7.2E-43 373.7 45.6 441 105-568 85-583 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.6E-35 5.6E-40 348.9 45.3 419 105-545 118-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.4E-29 4.6E-34 281.7 52.1 381 147-549 7-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 9.8E-30 3.3E-34 282.8 50.3 384 109-514 4-387 (388)
5 2gw1_A Mitochondrial precursor 100.0 1.1E-25 3.6E-30 259.3 43.7 404 106-530 8-479 (514)
6 2gw1_A Mitochondrial precursor 99.9 6E-25 2E-29 253.0 40.1 374 104-495 39-479 (514)
7 2y4t_A DNAJ homolog subfamily 99.9 1.7E-24 5.7E-29 245.2 42.6 311 137-462 24-361 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 1.9E-24 6.5E-29 244.7 42.6 347 158-526 11-406 (450)
9 3fp2_A TPR repeat-containing p 99.9 2.7E-24 9.3E-29 249.2 40.6 402 105-530 26-492 (537)
10 3fp2_A TPR repeat-containing p 99.9 3.2E-24 1.1E-28 248.6 41.2 405 139-567 25-494 (537)
11 4g26_A Pentatricopeptide repea 99.9 9.9E-25 3.4E-29 248.8 25.4 205 123-329 9-223 (501)
12 4g26_A Pentatricopeptide repea 99.9 1.8E-24 6.1E-29 246.7 26.1 210 153-369 3-223 (501)
13 3ieg_A DNAJ homolog subfamily 99.9 1.5E-21 5E-26 212.9 43.2 314 139-494 3-335 (359)
14 2xm6_A Protein corresponding t 99.9 2.6E-20 8.9E-25 213.8 54.0 364 124-531 27-434 (490)
15 3ieg_A DNAJ homolog subfamily 99.9 2.1E-21 7.2E-26 211.6 41.7 319 106-462 5-338 (359)
16 2xm6_A Protein corresponding t 99.9 1.2E-19 4E-24 208.3 53.8 365 157-565 25-433 (490)
17 2ooe_A Cleavage stimulation fa 99.9 1.1E-19 3.8E-24 210.7 47.4 410 138-567 12-495 (530)
18 3hym_B Cell division cycle pro 99.9 1.6E-20 5.5E-25 202.3 36.1 284 104-405 22-314 (330)
19 3hym_B Cell division cycle pro 99.9 7.6E-21 2.6E-25 204.9 33.1 291 137-440 20-314 (330)
20 1fch_A Peroxisomal targeting s 99.9 3.8E-21 1.3E-25 211.2 27.3 293 149-455 35-355 (368)
21 4g1t_A Interferon-induced prot 99.9 1.4E-19 4.9E-24 206.1 37.1 390 138-569 50-464 (472)
22 1fch_A Peroxisomal targeting s 99.9 6.7E-21 2.3E-25 209.2 23.9 260 185-458 35-313 (368)
23 4g1t_A Interferon-induced prot 99.9 2.1E-19 7.3E-24 204.6 35.8 382 106-530 53-460 (472)
24 2ooe_A Cleavage stimulation fa 99.9 5.7E-18 2E-22 196.3 46.8 406 106-529 15-492 (530)
25 4eqf_A PEX5-related protein; a 99.9 2.1E-20 7.1E-25 205.4 24.4 234 174-422 64-308 (365)
26 1xi4_A Clathrin heavy chain; a 99.8 1.7E-17 5.9E-22 199.0 45.3 385 106-559 987-1379(1630)
27 3cv0_A Peroxisome targeting si 99.8 4.5E-19 1.5E-23 190.7 28.3 275 142-455 24-311 (327)
28 1b89_A Protein (clathrin heavy 99.8 2.2E-20 7.7E-25 203.3 18.0 380 116-560 15-413 (449)
29 4eqf_A PEX5-related protein; a 99.8 2.6E-19 8.9E-24 196.6 26.7 271 138-419 64-351 (365)
30 3cv0_A Peroxisome targeting si 99.8 2.2E-18 7.4E-23 185.3 28.4 268 105-420 22-311 (327)
31 1xi4_A Clathrin heavy chain; a 99.8 2.8E-16 9.6E-21 188.7 45.3 387 35-520 982-1375(1630)
32 3mkr_A Coatomer subunit epsilo 99.8 2.2E-17 7.5E-22 175.4 28.1 260 110-388 5-267 (291)
33 3e4b_A ALGK; tetratricopeptide 99.8 5E-18 1.7E-22 192.3 23.0 347 109-495 8-388 (452)
34 3e4b_A ALGK; tetratricopeptide 99.8 8.6E-18 2.9E-22 190.3 24.4 380 144-563 8-420 (452)
35 1b89_A Protein (clathrin heavy 99.8 4.6E-18 1.6E-22 185.2 19.4 271 105-418 33-305 (449)
36 4e6h_A MRNA 3'-END-processing 99.8 5.4E-15 1.8E-19 173.2 44.5 431 123-569 51-575 (679)
37 3mkr_A Coatomer subunit epsilo 99.8 1.1E-16 3.8E-21 170.0 27.4 252 147-424 7-264 (291)
38 3uq3_A Heat shock protein STI1 99.8 1.4E-16 4.8E-21 164.7 27.4 227 139-385 5-236 (258)
39 3uq3_A Heat shock protein STI1 99.7 2.7E-16 9.2E-21 162.6 25.7 225 176-459 6-236 (258)
40 2h6f_A Protein farnesyltransfe 99.7 3.6E-16 1.2E-20 171.9 27.9 249 139-406 97-364 (382)
41 2h6f_A Protein farnesyltransfe 99.7 3.9E-16 1.3E-20 171.7 27.8 248 175-441 97-364 (382)
42 2pl2_A Hypothetical conserved 99.7 1.8E-16 6.3E-21 160.5 22.8 208 138-382 4-211 (217)
43 2pl2_A Hypothetical conserved 99.7 4.8E-16 1.6E-20 157.5 24.2 195 105-307 6-211 (217)
44 3u4t_A TPR repeat-containing p 99.7 1.2E-15 4.2E-20 159.4 27.7 248 106-365 5-264 (272)
45 3sf4_A G-protein-signaling mod 99.7 1.6E-16 5.6E-21 176.2 21.3 285 138-422 8-334 (406)
46 3sf4_A G-protein-signaling mod 99.7 1.6E-16 5.5E-21 176.2 21.2 286 173-458 7-335 (406)
47 3u4t_A TPR repeat-containing p 99.7 2.1E-15 7.3E-20 157.6 28.1 232 250-494 7-250 (272)
48 4a1s_A PINS, partner of inscut 99.7 2.3E-16 7.8E-21 175.9 20.5 283 144-460 53-373 (411)
49 4a1s_A PINS, partner of inscut 99.7 3E-16 1E-20 175.0 20.7 280 176-494 49-372 (411)
50 1ouv_A Conserved hypothetical 99.7 1.4E-14 4.8E-19 151.9 32.0 25 141-165 8-32 (273)
51 1ouv_A Conserved hypothetical 99.7 2.1E-14 7.2E-19 150.6 32.7 225 174-461 5-253 (273)
52 3ro2_A PINS homolog, G-protein 99.7 6.4E-16 2.2E-20 165.9 20.6 290 141-458 7-331 (338)
53 3ro2_A PINS homolog, G-protein 99.7 1E-15 3.6E-20 164.3 21.8 279 106-385 7-332 (338)
54 1xnf_A Lipoprotein NLPI; TPR, 99.7 2E-15 7E-20 157.8 23.3 249 153-418 19-269 (275)
55 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.4E-15 4.6E-20 159.1 21.6 247 116-379 17-269 (275)
56 2q7f_A YRRB protein; TPR, prot 99.7 3.8E-15 1.3E-19 152.5 23.4 200 139-345 23-222 (243)
57 2vq2_A PILW, putative fimbrial 99.7 3.5E-14 1.2E-18 143.2 29.9 203 138-345 7-211 (225)
58 2q7f_A YRRB protein; TPR, prot 99.7 2.6E-15 9E-20 153.8 21.8 204 174-388 22-225 (243)
59 2ho1_A Type 4 fimbrial biogene 99.7 2.5E-14 8.7E-19 147.6 29.0 200 139-344 37-237 (252)
60 2ho1_A Type 4 fimbrial biogene 99.7 3E-14 1E-18 147.0 29.5 200 106-311 39-239 (252)
61 4e6h_A MRNA 3'-END-processing 99.7 6E-13 2.1E-17 155.9 43.9 416 105-530 67-571 (679)
62 2vq2_A PILW, putative fimbrial 99.7 5.8E-14 2E-18 141.6 28.7 203 174-385 7-211 (225)
63 3ulq_A Response regulator aspa 99.6 1.3E-14 4.3E-19 160.6 21.2 236 216-458 108-367 (383)
64 3ulq_A Response regulator aspa 99.6 5.8E-14 2E-18 155.2 23.9 175 249-423 106-292 (383)
65 2ond_A Cleavage stimulation fa 99.6 8E-13 2.7E-17 141.4 30.7 222 333-569 33-275 (308)
66 2ond_A Cleavage stimulation fa 99.6 6.1E-13 2.1E-17 142.3 29.4 221 192-461 33-272 (308)
67 4abn_A Tetratricopeptide repea 99.6 7.8E-14 2.7E-18 158.8 23.3 217 153-382 82-318 (474)
68 3vtx_A MAMA; tetratricopeptide 99.6 4E-13 1.4E-17 131.5 25.2 165 139-309 5-169 (184)
69 3vtx_A MAMA; tetratricopeptide 99.6 4.4E-13 1.5E-17 131.2 25.3 167 174-345 4-170 (184)
70 3q15_A PSP28, response regulat 99.6 1.6E-13 5.4E-18 151.4 24.1 238 214-458 104-364 (378)
71 1hz4_A MALT regulatory protein 99.6 6.5E-13 2.2E-17 146.0 28.9 233 111-343 21-280 (373)
72 1hz4_A MALT regulatory protein 99.6 9.2E-13 3.1E-17 144.8 29.9 282 179-493 18-321 (373)
73 4abn_A Tetratricopeptide repea 99.6 1.4E-13 4.8E-18 156.6 23.5 217 226-455 83-317 (474)
74 3nf1_A KLC 1, kinesin light ch 99.6 1.9E-14 6.6E-19 153.0 14.1 170 140-309 28-223 (311)
75 3q15_A PSP28, response regulat 99.6 3.5E-13 1.2E-17 148.6 24.6 242 319-563 104-364 (378)
76 3nf1_A KLC 1, kinesin light ch 99.5 2.9E-14 1E-18 151.6 14.9 171 105-275 28-224 (311)
77 3spa_A Mtrpol, DNA-directed RN 99.5 9.7E-15 3.3E-19 170.7 11.3 119 139-258 127-248 (1134)
78 3spa_A Mtrpol, DNA-directed RN 99.5 8.5E-15 2.9E-19 171.2 10.6 119 356-475 127-246 (1134)
79 3as5_A MAMA; tetratricopeptide 99.4 8.5E-12 2.9E-16 121.1 22.2 165 140-310 9-173 (186)
80 4gyw_A UDP-N-acetylglucosamine 99.4 3.3E-12 1.1E-16 151.5 22.9 165 139-309 9-173 (723)
81 3edt_B KLC 2, kinesin light ch 99.4 1.3E-12 4.3E-17 136.5 17.2 135 175-309 43-197 (283)
82 4gyw_A UDP-N-acetylglucosamine 99.4 4.7E-12 1.6E-16 150.1 22.8 166 174-344 8-173 (723)
83 3edt_B KLC 2, kinesin light ch 99.4 2E-12 6.8E-17 135.0 16.1 158 118-275 15-198 (283)
84 3as5_A MAMA; tetratricopeptide 99.4 1.8E-11 6.2E-16 118.7 21.4 165 175-344 8-172 (186)
85 1qqe_A Vesicular transport pro 99.4 3.9E-11 1.3E-15 127.1 24.8 224 154-423 32-268 (292)
86 4i17_A Hypothetical protein; T 99.4 3.7E-11 1.3E-15 121.9 22.6 197 137-345 5-209 (228)
87 1qqe_A Vesicular transport pro 99.4 2.8E-11 9.7E-16 128.2 21.1 210 119-343 32-267 (292)
88 2uy1_A Cleavage stimulation fa 99.4 1.2E-09 4E-14 124.4 35.6 125 431-563 287-412 (493)
89 3qky_A Outer membrane assembly 99.3 4.4E-11 1.5E-15 124.2 21.0 172 139-311 15-225 (261)
90 4i17_A Hypothetical protein; T 99.3 8E-11 2.7E-15 119.4 22.4 205 105-324 8-222 (228)
91 3dra_A Protein farnesyltransfe 99.3 9.7E-10 3.3E-14 116.0 29.9 224 151-423 44-286 (306)
92 3dra_A Protein farnesyltransfe 99.3 7E-10 2.4E-14 117.1 27.3 184 106-296 34-235 (306)
93 3qky_A Outer membrane assembly 99.3 5.8E-11 2E-15 123.3 18.5 172 173-345 13-224 (261)
94 2ifu_A Gamma-SNAP; membrane fu 99.3 7.1E-11 2.4E-15 126.1 17.7 138 248-387 78-225 (307)
95 2uy1_A Cleavage stimulation fa 99.3 2.7E-08 9.2E-13 113.1 39.8 371 113-528 23-412 (493)
96 3urz_A Uncharacterized protein 99.2 2E-10 6.7E-15 115.0 18.3 115 140-259 5-135 (208)
97 3urz_A Uncharacterized protein 99.2 4.6E-10 1.6E-14 112.3 20.2 164 107-277 7-188 (208)
98 2ifu_A Gamma-SNAP; membrane fu 99.2 2.5E-10 8.6E-15 121.8 19.2 229 117-377 4-253 (307)
99 2yhc_A BAMD, UPF0169 lipoprote 99.2 1.3E-09 4.3E-14 110.5 23.0 189 141-348 6-216 (225)
100 2pzi_A Probable serine/threoni 99.2 2E-10 6.8E-15 136.6 18.7 185 186-382 402-602 (681)
101 2fo7_A Synthetic consensus TPR 99.2 1E-09 3.5E-14 99.8 19.2 129 141-274 3-131 (136)
102 2pzi_A Probable serine/threoni 99.2 1.6E-10 5.6E-15 137.3 17.3 174 150-331 402-583 (681)
103 2fo7_A Synthetic consensus TPR 99.2 1.2E-09 4.2E-14 99.2 19.4 131 177-311 3-133 (136)
104 2yhc_A BAMD, UPF0169 lipoprote 99.2 1.8E-09 6.3E-14 109.3 22.4 194 174-389 3-217 (225)
105 3q7a_A Farnesyltransferase alp 99.2 1.6E-08 5.4E-13 107.8 29.0 194 140-372 55-258 (349)
106 4ga2_A E3 SUMO-protein ligase 99.2 8.6E-11 3E-15 110.9 10.3 144 146-295 4-148 (150)
107 3rjv_A Putative SEL1 repeat pr 99.2 3.6E-09 1.2E-13 106.1 22.8 176 157-346 4-198 (212)
108 3mv2_B Coatomer subunit epsilo 99.2 4.7E-09 1.6E-13 109.7 24.1 251 110-388 19-285 (310)
109 2r5s_A Uncharacterized protein 99.2 5.5E-10 1.9E-14 108.4 15.9 164 105-274 7-172 (176)
110 3rjv_A Putative SEL1 repeat pr 99.1 2.8E-09 9.6E-14 106.9 21.1 177 122-312 4-199 (212)
111 2r5s_A Uncharacterized protein 99.1 3.7E-10 1.3E-14 109.6 14.1 56 182-239 13-68 (176)
112 3qou_A Protein YBBN; thioredox 99.1 1.4E-09 4.8E-14 114.8 18.1 165 138-307 116-281 (287)
113 4ga2_A E3 SUMO-protein ligase 99.1 1.7E-10 5.8E-15 108.9 9.8 145 181-330 3-148 (150)
114 3q7a_A Farnesyltransferase alp 99.1 1.9E-08 6.6E-13 107.2 26.6 180 106-292 55-253 (349)
115 3qou_A Protein YBBN; thioredox 99.1 2.6E-09 9E-14 112.6 19.6 167 174-344 116-283 (287)
116 2vsy_A XCC0866; transferase, g 99.1 5.2E-09 1.8E-13 121.8 22.2 156 117-278 2-160 (568)
117 3mv2_B Coatomer subunit epsilo 99.1 1.3E-08 4.4E-13 106.4 22.6 269 253-565 20-306 (310)
118 2vsy_A XCC0866; transferase, g 99.1 3.2E-09 1.1E-13 123.6 19.6 156 152-313 2-160 (568)
119 1hh8_A P67PHOX, NCF-2, neutrop 99.0 1.8E-08 6E-13 100.5 19.9 131 141-278 8-153 (213)
120 3dss_A Geranylgeranyl transfer 99.0 2.4E-07 8.4E-12 98.2 29.5 99 155-258 90-191 (331)
121 3dss_A Geranylgeranyl transfer 99.0 2.8E-07 9.6E-12 97.7 29.6 224 150-386 40-305 (331)
122 2c2l_A CHIP, carboxy terminus 99.0 4.7E-09 1.6E-13 110.3 15.3 195 174-384 3-198 (281)
123 3u3w_A Transcriptional activat 99.0 1.5E-08 5.2E-13 107.0 19.3 97 248-344 157-265 (293)
124 3u3w_A Transcriptional activat 99.0 1.7E-08 5.7E-13 106.7 19.3 134 251-384 120-265 (293)
125 4gco_A Protein STI-1; structur 99.0 1.6E-08 5.5E-13 92.0 16.3 97 141-241 15-111 (126)
126 4gco_A Protein STI-1; structur 99.0 2.1E-08 7.1E-13 91.3 16.7 111 175-289 13-123 (126)
127 1a17_A Serine/threonine protei 98.9 3.5E-08 1.2E-12 93.6 18.2 96 177-275 15-110 (166)
128 2qfc_A PLCR protein; TPR, HTH, 98.9 4E-08 1.4E-12 103.8 20.4 167 177-343 77-264 (293)
129 1a17_A Serine/threonine protei 98.9 4.6E-08 1.6E-12 92.8 18.4 131 139-274 13-145 (166)
130 2qfc_A PLCR protein; TPR, HTH, 98.9 7.6E-08 2.6E-12 101.6 22.0 172 139-310 75-266 (293)
131 4b4t_Q 26S proteasome regulato 98.9 2.6E-07 9E-12 103.0 27.5 97 248-344 137-244 (434)
132 4f3v_A ESX-1 secretion system 98.9 2.8E-08 9.4E-13 102.5 17.1 201 107-313 10-240 (282)
133 3gyz_A Chaperone protein IPGC; 98.9 1.4E-08 4.7E-13 95.6 13.4 100 175-277 36-135 (151)
134 4f3v_A ESX-1 secretion system 98.9 1.8E-08 6.3E-13 103.8 15.4 192 187-385 18-237 (282)
135 1hh8_A P67PHOX, NCF-2, neutrop 98.9 6.2E-08 2.1E-12 96.4 19.0 132 176-313 7-153 (213)
136 3gw4_A Uncharacterized protein 98.9 2.5E-08 8.7E-13 98.2 15.3 122 150-273 3-134 (203)
137 3gw4_A Uncharacterized protein 98.9 1.6E-08 5.5E-13 99.7 13.4 166 186-382 3-173 (203)
138 4b4t_Q 26S proteasome regulato 98.9 8.3E-07 2.8E-11 98.9 28.8 203 107-309 7-244 (434)
139 2lni_A Stress-induced-phosphop 98.8 5.9E-08 2E-12 88.1 15.6 97 176-275 17-113 (133)
140 2vyi_A SGTA protein; chaperone 98.8 8.7E-08 3E-12 86.4 16.5 117 140-261 13-129 (131)
141 1na0_A Designed protein CTPR3; 98.8 1.3E-07 4.4E-12 84.4 17.4 97 140-240 10-106 (125)
142 2vyi_A SGTA protein; chaperone 98.8 7.9E-08 2.7E-12 86.7 15.9 120 174-297 11-130 (131)
143 2c2l_A CHIP, carboxy terminus 98.8 2.1E-08 7.2E-13 105.3 13.7 100 210-311 3-102 (281)
144 1p5q_A FKBP52, FK506-binding p 98.8 6.6E-08 2.3E-12 104.3 17.9 134 138-274 146-293 (336)
145 1na0_A Designed protein CTPR3; 98.8 1.7E-07 5.7E-12 83.7 17.7 116 175-294 9-124 (125)
146 3gyz_A Chaperone protein IPGC; 98.8 7.7E-09 2.6E-13 97.4 8.5 101 210-312 35-135 (151)
147 2lni_A Stress-induced-phosphop 98.8 7.6E-08 2.6E-12 87.3 14.9 118 138-260 15-132 (133)
148 2vgx_A Chaperone SYCD; alterna 98.8 2.1E-08 7.3E-13 94.1 11.1 98 175-275 21-118 (148)
149 1p5q_A FKBP52, FK506-binding p 98.8 9.5E-08 3.3E-12 103.1 17.5 153 152-308 126-292 (336)
150 2e2e_A Formate-dependent nitri 98.8 4.9E-08 1.7E-12 94.3 13.6 122 114-240 20-144 (177)
151 3upv_A Heat shock protein STI1 98.8 1.5E-07 5.2E-12 85.1 15.9 96 177-275 6-101 (126)
152 2fbn_A 70 kDa peptidylprolyl i 98.8 1.7E-08 5.9E-13 99.7 10.2 132 139-273 38-184 (198)
153 2fbn_A 70 kDa peptidylprolyl i 98.8 1.3E-08 4.4E-13 100.6 8.8 152 146-301 11-176 (198)
154 3upv_A Heat shock protein STI1 98.8 1.9E-07 6.7E-12 84.4 15.9 99 139-241 4-102 (126)
155 2e2e_A Formate-dependent nitri 98.8 4.3E-08 1.5E-12 94.7 12.2 123 150-277 21-146 (177)
156 2vgx_A Chaperone SYCD; alterna 98.8 4.6E-08 1.6E-12 91.7 11.8 113 196-312 8-120 (148)
157 3sz7_A HSC70 cochaperone (SGT) 98.7 1.8E-07 6.2E-12 89.1 14.8 98 175-275 11-108 (164)
158 2xcb_A PCRH, regulatory protei 98.7 1.9E-07 6.6E-12 86.6 14.4 97 176-275 19-115 (142)
159 1elw_A TPR1-domain of HOP; HOP 98.7 5.7E-07 1.9E-11 79.3 16.3 96 177-275 6-101 (118)
160 1elw_A TPR1-domain of HOP; HOP 98.7 9.7E-07 3.3E-11 77.7 17.3 112 139-255 4-115 (118)
161 3sz7_A HSC70 cochaperone (SGT) 98.7 3.5E-07 1.2E-11 87.1 14.9 102 138-243 10-111 (164)
162 3q49_B STIP1 homology and U bo 98.6 5.5E-07 1.9E-11 82.4 15.5 99 174-275 8-106 (137)
163 2xcb_A PCRH, regulatory protei 98.6 2.5E-07 8.4E-12 85.9 13.2 101 138-242 17-117 (142)
164 4gcn_A Protein STI-1; structur 98.6 3.1E-07 1E-11 83.5 13.2 98 176-275 9-112 (127)
165 4gcn_A Protein STI-1; structur 98.6 7.3E-07 2.5E-11 81.0 15.3 107 140-250 9-120 (127)
166 1hxi_A PEX5, peroxisome target 98.6 4.8E-07 1.6E-11 81.5 12.5 92 180-274 22-113 (121)
167 2dba_A Smooth muscle cell asso 98.6 1.6E-06 5.5E-11 80.1 16.5 110 138-253 27-140 (148)
168 1elr_A TPR2A-domain of HOP; HO 98.6 7.3E-07 2.5E-11 80.2 13.4 97 177-275 6-108 (131)
169 3q49_B STIP1 homology and U bo 98.6 1.2E-06 4E-11 80.2 14.9 101 137-241 7-107 (137)
170 3ro3_A PINS homolog, G-protein 98.5 8E-07 2.7E-11 83.2 13.5 99 140-238 10-116 (164)
171 2dba_A Smooth muscle cell asso 98.5 1.4E-06 4.6E-11 80.6 14.8 103 173-278 26-131 (148)
172 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 8.2E-07 2.8E-11 100.0 15.7 123 140-265 269-404 (457)
173 1dce_A Protein (RAB geranylger 98.5 2.5E-06 8.7E-11 98.3 19.7 172 156-374 46-244 (567)
174 3ro3_A PINS homolog, G-protein 98.5 6.4E-07 2.2E-11 83.9 12.1 142 212-383 10-156 (164)
175 1hxi_A PEX5, peroxisome target 98.5 9.9E-07 3.4E-11 79.3 12.7 92 145-240 23-114 (121)
176 1wao_1 Serine/threonine protei 98.5 1.4E-07 4.7E-12 106.9 8.6 123 143-270 10-134 (477)
177 1elr_A TPR2A-domain of HOP; HO 98.5 1.3E-06 4.5E-11 78.5 13.4 114 139-256 4-122 (131)
178 1dce_A Protein (RAB geranylger 98.5 5.4E-06 1.8E-10 95.6 21.6 199 108-334 32-244 (567)
179 3rkv_A Putative peptidylprolyl 98.5 1.1E-06 3.9E-11 83.3 12.9 66 211-277 63-128 (162)
180 2xev_A YBGF; tetratricopeptide 98.5 5.1E-06 1.7E-10 74.9 16.2 96 145-240 8-105 (129)
181 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 2.3E-06 8E-11 96.3 16.6 145 153-301 248-405 (457)
182 3rkv_A Putative peptidylprolyl 98.4 1.4E-06 5E-11 82.5 12.6 102 140-243 12-129 (162)
183 2xev_A YBGF; tetratricopeptide 98.4 7E-06 2.4E-10 73.9 16.6 99 107-205 5-106 (129)
184 1wao_1 Serine/threonine protei 98.4 7.9E-07 2.7E-11 100.7 12.3 120 111-235 13-134 (477)
185 2kck_A TPR repeat; tetratricop 98.4 1.7E-06 5.9E-11 75.4 11.9 99 176-276 7-107 (112)
186 2kck_A TPR repeat; tetratricop 98.4 2E-06 6.8E-11 74.9 11.5 102 139-242 6-108 (112)
187 1ihg_A Cyclophilin 40; ppiase 98.4 2.3E-06 8E-11 93.3 14.4 120 176-299 224-359 (370)
188 2hr2_A Hypothetical protein; a 98.4 4.4E-06 1.5E-10 77.9 13.9 97 141-239 13-130 (159)
189 1ihg_A Cyclophilin 40; ppiase 98.4 2.6E-06 9E-11 92.9 14.1 125 140-267 224-362 (370)
190 2hr2_A Hypothetical protein; a 98.4 4.7E-06 1.6E-10 77.7 13.6 100 175-275 11-131 (159)
191 2if4_A ATFKBP42; FKBP-like, al 98.3 1.1E-06 3.6E-11 94.9 9.3 149 140-311 180-329 (338)
192 3k9i_A BH0479 protein; putativ 98.3 1.6E-06 5.4E-11 77.3 8.2 90 152-243 3-93 (117)
193 2if4_A ATFKBP42; FKBP-like, al 98.3 1.8E-06 6E-11 93.1 9.3 150 175-346 179-329 (338)
194 3k9i_A BH0479 protein; putativ 98.2 1.8E-06 6.3E-11 76.8 6.9 93 116-210 2-96 (117)
195 2l6j_A TPR repeat-containing p 98.1 2.8E-06 9.6E-11 74.2 5.5 94 174-270 3-102 (111)
196 1klx_A Cysteine rich protein B 98.0 7E-05 2.4E-09 68.8 14.1 109 154-275 10-126 (138)
197 2kat_A Uncharacterized protein 98.0 2.9E-05 9.8E-10 68.5 10.7 80 157-240 3-82 (115)
198 1na3_A Designed protein CTPR2; 98.0 5.8E-05 2E-09 62.9 12.0 80 176-258 10-89 (91)
199 2kat_A Uncharacterized protein 98.0 2.3E-05 8E-10 69.1 9.9 80 193-275 3-82 (115)
200 1klx_A Cysteine rich protein B 98.0 9E-05 3.1E-09 68.1 14.2 112 118-242 9-128 (138)
201 3n71_A Histone lysine methyltr 98.0 4.7E-05 1.6E-09 85.7 14.2 126 185-310 319-464 (490)
202 3n71_A Histone lysine methyltr 98.0 4.3E-05 1.5E-09 86.0 13.3 129 148-276 318-465 (490)
203 1zu2_A Mitochondrial import re 98.0 2.7E-05 9.2E-10 72.4 9.5 86 153-242 16-122 (158)
204 1zu2_A Mitochondrial import re 97.9 2.6E-05 8.8E-10 72.6 8.9 89 186-277 13-122 (158)
205 2l6j_A TPR repeat-containing p 97.9 8.4E-06 2.9E-10 71.1 4.8 68 210-278 3-70 (111)
206 1na3_A Designed protein CTPR2; 97.9 0.00014 5E-09 60.4 12.2 84 138-225 8-91 (91)
207 3lvg_A Clathrin heavy chain 1; 97.8 3.4E-09 1.2E-13 113.3 -22.9 271 102-416 52-325 (624)
208 3ma5_A Tetratricopeptide repea 97.7 9.5E-05 3.2E-09 63.5 8.9 63 175-239 7-69 (100)
209 3ma5_A Tetratricopeptide repea 97.7 0.00014 5E-09 62.3 9.5 65 138-204 6-70 (100)
210 4ady_A RPN2, 26S proteasome re 97.7 0.13 4.5E-06 61.1 36.8 278 253-547 381-673 (963)
211 3mkq_A Coatomer beta'-subunit; 97.7 0.0024 8.1E-08 77.1 23.1 152 291-490 609-761 (814)
212 3mkq_A Coatomer beta'-subunit; 97.6 0.002 6.8E-08 77.7 20.7 98 150-273 610-708 (814)
213 3u64_A Protein TP_0956; tetrat 97.5 0.0057 1.9E-07 62.3 19.7 108 411-528 179-297 (301)
214 2kc7_A BFR218_protein; tetratr 97.4 0.00036 1.2E-08 59.3 8.2 58 182-241 7-65 (99)
215 3ly7_A Transcriptional activat 97.4 0.0023 7.7E-08 68.0 15.4 118 191-312 215-341 (372)
216 3u64_A Protein TP_0956; tetrat 97.4 0.0044 1.5E-07 63.1 16.2 88 191-278 179-272 (301)
217 2kc7_A BFR218_protein; tetratr 97.3 0.00065 2.2E-08 57.6 8.3 61 145-207 6-67 (99)
218 3ly7_A Transcriptional activat 97.3 0.0029 1E-07 67.2 14.6 134 210-346 193-340 (372)
219 4gns_B Protein CSD3, chitin bi 97.3 0.21 7.3E-06 58.3 31.0 127 215-342 252-397 (754)
220 3lvg_A Clathrin heavy chain 1; 97.3 1.6E-06 5.4E-11 93.1 -10.9 221 100-337 79-325 (624)
221 4gns_B Protein CSD3, chitin bi 97.2 0.031 1.1E-06 65.2 23.9 129 107-237 250-397 (754)
222 4ady_A RPN2, 26S proteasome re 97.2 0.37 1.3E-05 57.3 32.9 263 291-563 384-657 (963)
223 1qsa_A Protein (soluble lytic 97.2 0.51 1.8E-05 54.1 34.5 403 107-559 9-437 (618)
224 3qww_A SET and MYND domain-con 97.1 0.0015 5.1E-08 72.1 11.0 88 152-239 311-410 (433)
225 3qwp_A SET and MYND domain-con 97.1 0.0034 1.2E-07 69.3 13.9 90 185-274 297-399 (429)
226 3mkq_B Coatomer subunit alpha; 97.1 0.027 9.1E-07 53.0 17.5 134 107-272 8-141 (177)
227 1wy6_A Hypothetical protein ST 97.0 0.098 3.4E-06 46.1 18.3 141 291-462 17-157 (172)
228 2v5f_A Prolyl 4-hydroxylase su 97.0 0.0058 2E-07 52.6 11.0 71 137-207 3-78 (104)
229 3mkq_B Coatomer subunit alpha; 96.9 0.054 1.9E-06 50.9 17.8 15 548-562 128-142 (177)
230 1wy6_A Hypothetical protein ST 96.8 0.078 2.7E-06 46.7 16.5 144 111-278 14-157 (172)
231 3qwp_A SET and MYND domain-con 96.8 0.0058 2E-07 67.5 12.3 95 146-240 294-400 (429)
232 3qww_A SET and MYND domain-con 96.8 0.0058 2E-07 67.4 12.1 89 116-204 310-411 (433)
233 4b4t_P 26S proteasome regulato 96.7 0.1 3.6E-06 57.6 21.4 170 358-527 139-322 (445)
234 3bee_A Putative YFRE protein; 96.7 0.013 4.6E-07 49.1 10.7 66 174-241 5-73 (93)
235 3bee_A Putative YFRE protein; 96.7 0.021 7.2E-07 47.9 11.7 75 136-212 3-80 (93)
236 3txn_A 26S proteasome regulato 96.7 0.28 9.6E-06 52.8 23.3 95 286-383 104-208 (394)
237 1pc2_A Mitochondria fission pr 96.6 0.013 4.3E-07 53.8 10.4 88 119-207 13-103 (152)
238 3txn_A 26S proteasome regulato 96.5 0.28 9.5E-06 52.8 22.4 177 321-501 104-290 (394)
239 2v5f_A Prolyl 4-hydroxylase su 96.5 0.017 5.9E-07 49.6 10.6 75 174-249 4-83 (104)
240 4b4t_P 26S proteasome regulato 96.5 0.44 1.5E-05 52.6 24.1 164 397-560 139-320 (445)
241 3lpz_A GET4 (YOR164C homolog); 96.2 1.4 4.9E-05 45.8 29.7 25 394-418 135-159 (336)
242 1pc2_A Mitochondria fission pr 96.2 0.029 9.8E-07 51.5 10.5 83 191-275 14-100 (152)
243 2wpv_A GET4, UPF0363 protein Y 96.1 1.5 5.2E-05 45.3 27.3 26 394-419 133-158 (312)
244 4h7y_A Dual specificity protei 95.9 0.057 2E-06 48.7 10.7 111 355-467 12-131 (161)
245 1nzn_A CGI-135 protein, fissio 95.9 0.041 1.4E-06 48.5 9.4 97 110-207 7-106 (126)
246 4h7y_A Dual specificity protei 95.8 0.065 2.2E-06 48.4 10.4 53 225-278 74-126 (161)
247 3ffl_A Anaphase-promoting comp 95.6 0.037 1.3E-06 51.1 8.5 138 103-256 19-165 (167)
248 2wpv_A GET4, UPF0363 protein Y 95.2 3.4 0.00012 42.7 27.8 170 248-458 35-216 (312)
249 3lpz_A GET4 (YOR164C homolog); 95.2 3.5 0.00012 42.8 27.7 169 249-458 38-215 (336)
250 4fhn_B Nucleoporin NUP120; pro 95.1 0.26 8.9E-06 61.5 16.8 106 355-460 841-968 (1139)
251 3kae_A CDC27, possible protein 95.1 0.66 2.3E-05 42.4 14.5 87 364-460 41-144 (242)
252 3ffl_A Anaphase-promoting comp 94.8 0.15 5.1E-06 47.1 9.8 136 141-291 22-165 (167)
253 4fhn_B Nucleoporin NUP120; pro 94.8 0.55 1.9E-05 58.6 18.3 192 145-344 818-1049(1139)
254 2qx5_A Nucleoporin NIC96; mRNA 94.7 1.6 5.5E-05 50.1 20.4 27 105-131 153-179 (661)
255 1nzn_A CGI-135 protein, fissio 94.6 0.14 4.9E-06 45.0 8.9 85 191-277 17-105 (126)
256 2ff4_A Probable regulatory pro 94.5 0.64 2.2E-05 50.3 16.0 69 178-248 174-247 (388)
257 2qx5_A Nucleoporin NIC96; mRNA 94.5 2.2 7.6E-05 49.0 21.0 82 286-383 299-383 (661)
258 2ff4_A Probable regulatory pro 93.0 2.7 9.3E-05 45.2 17.4 138 392-548 109-258 (388)
259 3iot_A Maltose-binding protein 92.1 0.011 3.9E-07 65.8 -3.1 11 409-419 271-281 (449)
260 1y8m_A FIS1; mitochondria, unk 91.9 1.5 5.2E-05 39.2 11.0 69 209-277 37-108 (144)
261 3iot_A Maltose-binding protein 91.3 0.035 1.2E-06 61.7 -0.2 12 334-345 190-201 (449)
262 3o48_A Mitochondria fission 1 91.2 0.92 3.2E-05 40.1 8.8 68 209-276 38-108 (134)
263 3o48_A Mitochondria fission 1 90.8 1.8 6.3E-05 38.2 10.3 59 471-529 46-107 (134)
264 4b4t_S RPN3, 26S proteasome re 90.5 3.1 0.00011 45.9 14.2 65 395-459 231-299 (523)
265 1qsa_A Protein (soluble lytic 90.5 28 0.00096 39.7 41.9 49 437-488 388-436 (618)
266 3kae_A CDC27, possible protein 90.3 11 0.00037 34.6 19.8 114 148-274 11-142 (242)
267 1y8m_A FIS1; mitochondria, unk 90.2 3.7 0.00013 36.7 11.8 61 470-530 44-107 (144)
268 3f3f_C Nucleoporin NUP85; stru 89.6 20 0.00068 39.9 19.6 75 479-555 495-569 (570)
269 1zbp_A Hypothetical protein VP 89.0 4.9 0.00017 40.2 13.0 120 255-385 6-129 (273)
270 3mv2_A Coatomer subunit alpha; 89.0 6.4 0.00022 40.4 14.1 51 262-312 186-238 (325)
271 4b4t_R RPN7, 26S proteasome re 88.8 4.7 0.00016 44.0 14.3 63 141-203 133-196 (429)
272 4b4t_S RPN3, 26S proteasome re 88.7 5.9 0.0002 43.8 14.6 26 317-342 232-257 (523)
273 4b4t_R RPN7, 26S proteasome re 88.2 4.6 0.00016 44.1 13.8 62 213-274 133-196 (429)
274 1v54_E Cytochrome C oxidase po 88.1 5 0.00017 33.4 10.1 63 480-543 25-87 (109)
275 2y69_E Cytochrome C oxidase su 84.9 15 0.00051 32.3 11.9 64 480-544 68-131 (152)
276 1v54_E Cytochrome C oxidase po 82.9 10 0.00035 31.6 9.6 62 226-288 25-86 (109)
277 3eiq_C Programmed cell death p 81.8 7 0.00024 41.2 10.7 64 359-427 220-285 (358)
278 1zbp_A Hypothetical protein VP 79.7 29 0.00098 34.7 13.6 53 186-240 8-60 (273)
279 2y69_E Cytochrome C oxidase su 78.5 14 0.00049 32.4 9.5 61 227-288 69-129 (152)
280 3f3f_C Nucleoporin NUP85; stru 78.2 90 0.0031 34.7 24.7 75 444-520 495-569 (570)
281 3ltm_A Alpha-REP4; protein eng 76.6 51 0.0018 31.1 18.4 169 355-547 32-200 (211)
282 3mv2_A Coatomer subunit alpha; 75.1 27 0.00093 35.8 12.2 53 226-278 185-239 (325)
283 3esl_A Checkpoint serine/threo 75.0 53 0.0018 31.2 13.4 59 408-466 92-151 (202)
284 3esl_A Checkpoint serine/threo 74.9 59 0.002 30.9 14.5 54 191-244 95-148 (202)
285 3eiq_C Programmed cell death p 73.5 80 0.0027 33.0 15.8 26 213-238 56-81 (358)
286 2pm7_A Protein WEB1, protein t 72.7 47 0.0016 35.4 14.1 19 323-341 268-286 (399)
287 2zu6_B Programmed cell death p 71.8 16 0.00054 37.6 9.8 63 359-426 169-233 (307)
288 2p58_C Putative type III secre 70.8 40 0.0014 28.0 9.7 47 186-239 51-97 (116)
289 2pm7_A Protein WEB1, protein t 70.5 1.2E+02 0.004 32.4 17.4 21 541-561 342-362 (399)
290 4fke_A Aminopeptidase N; zinc 69.6 1.9E+02 0.0065 34.6 21.8 92 250-344 690-786 (909)
291 3mkr_B Coatomer subunit alpha; 69.1 1.1E+02 0.0036 31.4 16.6 29 318-346 200-228 (320)
292 4a1g_A Mitotic checkpoint seri 67.8 70 0.0024 28.8 12.2 55 412-466 82-137 (152)
293 2uwj_G Type III export protein 67.4 32 0.0011 28.5 8.4 49 185-240 49-97 (115)
294 3ltj_A Alpharep-4; protein eng 65.7 86 0.003 29.1 17.7 13 358-370 123-135 (201)
295 3pvs_A Replication-associated 65.5 1.3E+02 0.0044 32.6 16.2 38 407-444 267-304 (447)
296 2wvi_A Mitotic checkpoint seri 64.4 54 0.0018 30.0 10.7 54 413-466 78-132 (164)
297 3rjo_A Endoplasmic reticulum a 64.3 1.6E+02 0.0053 31.6 24.3 29 283-311 269-297 (419)
298 3pvs_A Replication-associated 63.9 1.5E+02 0.005 32.1 16.2 20 224-243 268-287 (447)
299 1ug3_A EIF4GI, eukaryotic prot 63.6 55 0.0019 34.1 12.3 24 178-201 14-37 (339)
300 4a1g_A Mitotic checkpoint seri 63.2 68 0.0023 28.9 10.9 50 230-279 84-134 (152)
301 2wvi_A Mitotic checkpoint seri 62.8 91 0.0031 28.5 11.9 51 194-244 79-129 (164)
302 3i5p_A Nucleoporin NUP170; hel 61.8 1.4E+02 0.0046 33.1 15.3 34 464-497 216-249 (525)
303 1wdy_A 2-5A-dependent ribonucl 60.9 7 0.00024 39.1 4.7 23 476-498 190-212 (285)
304 1n11_A Ankyrin; clathrin, BAND 59.5 19 0.00065 38.8 8.2 17 365-381 218-234 (437)
305 2zu6_B Programmed cell death p 59.4 1.6E+02 0.0054 30.0 16.6 63 398-461 169-233 (307)
306 4aez_C MAD3, mitotic spindle c 59.2 76 0.0026 30.6 11.1 55 412-466 131-186 (223)
307 2nsz_A Programmed cell death p 57.3 77 0.0026 27.6 10.2 24 215-238 11-34 (129)
308 3ctd_A Putative ATPase, AAA fa 56.9 51 0.0018 31.4 9.2 27 443-469 48-74 (213)
309 3i5p_A Nucleoporin NUP170; hel 56.7 2.4E+02 0.0081 31.2 24.9 67 280-346 177-247 (525)
310 3c1d_A Protein ORAA, regulator 55.7 1.2E+02 0.0041 27.5 13.0 109 445-558 45-154 (159)
311 2npm_A 14-3-3 domain containin 55.4 1.7E+02 0.0056 29.0 14.9 41 216-256 33-76 (260)
312 4gq2_M Nucleoporin NUP120; bet 54.9 66 0.0023 38.8 12.5 48 432-479 899-950 (950)
313 1wdy_A 2-5A-dependent ribonucl 53.5 33 0.0011 33.8 8.4 13 368-380 157-169 (285)
314 3d5l_A Regulatory protein RECX 53.4 1.6E+02 0.0055 28.3 13.0 113 445-561 91-206 (221)
315 1oyz_A Hypothetical protein YI 52.9 1.8E+02 0.006 28.6 21.3 15 356-370 142-156 (280)
316 2r9g_A AAA ATPase, central reg 52.5 89 0.003 29.5 10.0 18 443-460 27-44 (204)
317 4g8k_A 2-5A-dependent ribonucl 52.5 57 0.002 33.4 10.2 16 366-381 175-190 (337)
318 1bpo_A Protein (clathrin); cla 52.4 76 0.0026 34.3 10.7 111 118-235 343-453 (494)
319 3ltm_A Alpha-REP4; protein eng 52.3 1.5E+02 0.0051 27.6 19.5 153 137-308 31-183 (211)
320 2ion_A PDCD4, programmed cell 52.2 61 0.0021 29.3 8.8 24 215-238 13-36 (152)
321 4gq2_M Nucleoporin NUP120; bet 51.7 50 0.0017 39.9 10.7 131 145-295 816-950 (950)
322 3rjo_A Endoplasmic reticulum a 51.3 2.5E+02 0.0085 29.9 22.5 160 357-526 198-366 (419)
323 2uwj_G Type III export protein 50.5 56 0.0019 27.1 7.1 75 119-202 21-95 (115)
324 2nsz_A Programmed cell death p 50.1 97 0.0033 27.0 9.6 64 248-312 9-74 (129)
325 3t5v_B Nuclear mRNA export pro 49.6 1.7E+02 0.0057 31.7 13.3 63 248-310 178-249 (455)
326 2d2s_A Exocyst complex compone 48.6 67 0.0023 31.4 9.1 22 181-202 24-45 (235)
327 2d2s_A Exocyst complex compone 47.9 55 0.0019 32.0 8.4 91 435-528 23-119 (235)
328 4aez_C MAD3, mitotic spindle c 47.7 2E+02 0.0068 27.7 13.7 52 228-279 131-183 (223)
329 3ctd_A Putative ATPase, AAA fa 47.6 80 0.0027 30.1 8.9 46 399-444 36-84 (213)
330 2ijq_A Hypothetical protein; s 46.7 1.7E+02 0.0058 26.6 10.8 74 291-364 42-125 (161)
331 4gq4_A Menin; tumor suppressor 46.2 2.9E+02 0.01 29.2 14.2 49 317-365 304-352 (489)
332 3us6_A Histidine-containing ph 46.1 1.4E+02 0.0047 26.9 10.3 48 480-528 70-121 (153)
333 3bge_A Predicted ATPase; struc 46.1 1.2E+02 0.004 28.6 9.7 38 223-260 19-56 (201)
334 3mkr_B Coatomer subunit alpha; 46.1 2.6E+02 0.0088 28.5 17.5 49 282-345 199-247 (320)
335 2zhj_A Annexin A4; zynogen gra 45.9 2.6E+02 0.009 28.6 14.8 43 482-527 252-294 (322)
336 3ubw_A 14-3-3E, 14-3-3 protein 45.8 2.3E+02 0.0079 27.9 15.6 55 288-342 38-93 (261)
337 2r9g_A AAA ATPase, central reg 45.7 1.6E+02 0.0056 27.7 10.6 37 223-260 26-62 (204)
338 1dm5_A Annexin XII E105K mutan 45.6 2.6E+02 0.0089 28.5 14.3 41 484-527 249-289 (315)
339 1lsh_A Lipovitellin (LV-1N, LV 45.0 5E+02 0.017 31.5 29.0 12 217-228 345-356 (1056)
340 3eu9_A Huntingtin-interacting 44.9 31 0.0011 33.0 6.3 10 254-263 47-56 (240)
341 3ubw_A 14-3-3E, 14-3-3 protein 44.9 2.4E+02 0.0082 27.8 15.3 60 213-272 33-93 (261)
342 1ug3_A EIF4GI, eukaryotic prot 44.9 74 0.0025 33.1 9.4 27 213-239 13-39 (339)
343 1hm6_A Annexin 1; phospholipid 44.8 1.3E+02 0.0043 31.4 11.1 42 483-527 278-319 (346)
344 3lxu_X Tripeptidyl-peptidase 2 44.3 1.2E+02 0.0041 37.6 12.1 83 482-566 1266-1348(1354)
345 3u84_A Menin; MLL, JUND, ledgf 44.2 3E+02 0.01 29.1 13.1 99 250-364 261-366 (550)
346 2ion_A PDCD4, programmed cell 44.2 66 0.0023 29.0 7.7 64 248-312 11-76 (152)
347 3bge_A Predicted ATPase; struc 42.9 1.2E+02 0.0041 28.5 9.2 38 407-444 19-56 (201)
348 3lxu_X Tripeptidyl-peptidase 2 42.5 3.9E+02 0.013 33.1 16.1 40 327-373 1295-1334(1354)
349 3e3v_A Regulatory protein RECX 41.7 2.1E+02 0.0071 26.4 11.0 112 448-562 51-164 (177)
350 1oyz_A Hypothetical protein YI 41.6 2.6E+02 0.0089 27.3 25.3 153 355-528 104-262 (280)
351 1n11_A Ankyrin; clathrin, BAND 41.4 26 0.0009 37.7 5.6 337 180-560 16-366 (437)
352 2ijq_A Hypothetical protein; s 41.4 83 0.0028 28.7 7.8 56 112-167 40-103 (161)
353 3uzd_A 14-3-3 protein gamma; s 40.9 2.7E+02 0.0092 27.3 13.9 56 288-343 11-67 (248)
354 3bu8_A Telomeric repeat-bindin 40.8 2.5E+02 0.0085 26.8 14.4 24 322-345 120-143 (235)
355 2br9_A 14-3-3E, 14-3-3 protein 39.5 2.7E+02 0.0094 27.0 14.1 61 176-237 6-67 (234)
356 1n00_A Annexin GH1; membrane-b 39.4 87 0.003 32.2 8.8 12 263-274 20-31 (321)
357 3t5v_B Nuclear mRNA export pro 39.1 2.2E+02 0.0075 30.8 12.2 64 140-204 177-249 (455)
358 1axn_A Annexin III; annexin fa 38.7 3.4E+02 0.012 27.8 15.3 42 483-527 254-295 (323)
359 1n00_A Annexin GH1; membrane-b 38.7 1.7E+02 0.0057 30.0 10.8 13 514-526 279-291 (321)
360 1bpo_A Protein (clathrin); cla 37.2 2.2E+02 0.0074 30.8 11.3 111 152-269 342-452 (494)
361 2npm_A 14-3-3 domain containin 36.8 3.2E+02 0.011 27.0 16.2 39 288-326 35-76 (260)
362 1k1a_A B-cell lymphoma 3-encod 36.7 1.8E+02 0.006 27.5 10.4 26 324-349 14-39 (241)
363 4fke_A Aminopeptidase N; zinc 36.2 6.2E+02 0.021 30.1 30.1 163 359-528 689-859 (909)
364 2p58_C Putative type III secre 36.1 1.9E+02 0.0064 24.1 10.2 78 330-424 21-98 (116)
365 1dm5_A Annexin XII E105K mutan 35.8 2.4E+02 0.0083 28.7 11.5 39 519-560 249-287 (315)
366 3eu9_A Huntingtin-interacting 35.6 53 0.0018 31.3 6.2 15 185-199 16-30 (240)
367 1ya0_A SMG-7 transcript varian 35.2 2E+02 0.0067 31.7 11.2 75 181-258 158-232 (497)
368 2rfa_A Transient receptor pote 34.5 58 0.002 31.1 6.3 17 365-381 43-59 (232)
369 3ljn_A Hypothetical protein; a 34.3 3.6E+02 0.012 27.4 13.1 16 366-381 180-195 (364)
370 1o9d_A 14-3-3-like protein C; 34.1 3.5E+02 0.012 26.6 14.9 38 288-325 15-54 (260)
371 4b4t_O 26S proteasome regulato 33.8 2E+02 0.007 30.3 10.9 28 247-274 128-155 (393)
372 4g8k_A 2-5A-dependent ribonucl 33.6 92 0.0031 31.8 8.1 78 472-560 243-323 (337)
373 1yii_A Annexin A5, annexin V, 33.5 4E+02 0.014 27.1 17.5 42 483-527 250-291 (320)
374 3u84_A Menin; MLL, JUND, ledgf 33.3 2.8E+02 0.0096 29.3 10.9 30 429-458 317-346 (550)
375 1w3w_A Annexin A8; coagulation 32.9 3E+02 0.01 28.2 11.6 78 262-344 24-108 (327)
376 4b4t_O 26S proteasome regulato 32.7 2.4E+02 0.0082 29.8 11.3 96 360-455 80-194 (393)
377 3re2_A Predicted protein; meni 32.2 4.5E+02 0.015 27.2 13.6 28 317-344 297-324 (472)
378 1o9d_A 14-3-3-like protein C; 31.5 3.9E+02 0.013 26.3 17.4 24 181-204 14-37 (260)
379 3re2_A Predicted protein; meni 31.2 4.6E+02 0.016 27.1 11.9 29 118-147 14-42 (472)
380 3hra_A Ankyrin repeat family p 31.1 52 0.0018 30.5 5.1 83 474-557 112-197 (201)
381 3t8k_A Uncharacterized protein 30.9 1.5E+02 0.005 27.4 8.3 30 322-351 41-70 (186)
382 1lsh_A Lipovitellin (LV-1N, LV 30.8 7.9E+02 0.027 29.7 24.7 77 227-309 287-367 (1056)
383 3ltj_A Alpharep-4; protein eng 30.7 3.1E+02 0.011 25.0 19.7 155 136-309 25-179 (201)
384 1yii_A Annexin A5, annexin V, 30.4 4.5E+02 0.015 26.7 14.0 41 517-560 249-289 (320)
385 2xdt_A Endoplasmic reticulum a 30.3 7.5E+02 0.026 29.3 27.3 95 358-459 682-779 (897)
386 1hm6_A Annexin 1; phospholipid 29.9 4.8E+02 0.016 26.9 14.7 43 413-458 278-320 (346)
387 3dfg_A Xcrecx, regulatory prot 29.7 3.1E+02 0.011 24.7 10.9 105 450-559 52-157 (162)
388 3d5l_A Regulatory protein RECX 29.7 2E+02 0.0067 27.7 9.0 14 300-313 95-108 (221)
389 2cwy_A Hypothetical protein TT 29.7 2.3E+02 0.0078 23.1 8.1 50 293-344 13-67 (94)
390 3uzd_A 14-3-3 protein gamma; s 29.6 4.1E+02 0.014 26.0 16.0 60 178-238 7-67 (248)
391 2f6m_A Suppressor protein STP2 29.3 98 0.0034 23.4 5.1 41 180-222 7-47 (65)
392 1ya0_A SMG-7 transcript varian 29.2 1.4E+02 0.0047 32.9 8.7 79 317-406 153-231 (497)
393 1k1a_A B-cell lymphoma 3-encod 29.1 72 0.0025 30.4 6.0 16 257-272 17-32 (241)
394 3k8p_D Protein transport prote 28.8 5.2E+02 0.018 29.3 13.0 57 106-165 402-469 (709)
395 1yvi_A Histidine-containing ph 27.5 3.1E+02 0.011 24.3 9.4 48 480-528 71-122 (149)
396 3qz3_A Ferritin; structural ge 27.3 3.7E+02 0.013 24.8 10.7 155 263-457 13-167 (184)
397 4ets_A Ferric uptake regulatio 27.1 1.2E+02 0.004 27.7 6.5 69 192-261 14-84 (162)
398 3kea_A K1L; tropism, ANK repea 26.8 3E+02 0.01 27.0 10.5 25 436-460 164-188 (285)
399 2xig_A Ferric uptake regulatio 26.2 1.8E+02 0.0062 25.9 7.6 11 263-273 43-53 (150)
400 3l6a_A Eukaryotic translation 25.5 5.8E+02 0.02 26.5 22.7 25 177-201 14-38 (364)
401 1s3q_A Ferritin; ferroxidase, 25.5 3.8E+02 0.013 24.3 10.6 18 333-350 54-71 (173)
402 3t8k_A Uncharacterized protein 25.3 1.6E+02 0.0055 27.1 7.4 89 367-463 14-107 (186)
403 2cwy_A Hypothetical protein TT 25.1 1.3E+02 0.0044 24.6 5.7 21 114-134 11-31 (94)
404 3b7b_A Euchromatic histone-lys 24.4 68 0.0023 30.6 4.7 221 251-494 13-236 (237)
405 3e3v_A Regulatory protein RECX 24.2 4.2E+02 0.014 24.3 10.0 51 227-278 49-99 (177)
406 2xdt_A Endoplasmic reticulum a 23.8 9.5E+02 0.033 28.3 24.8 27 283-309 752-778 (897)
407 3se6_A Endoplasmic reticulum a 23.7 9.9E+02 0.034 28.5 24.2 92 215-311 752-848 (967)
408 1jr3_A DNA polymerase III subu 23.7 5.9E+02 0.02 25.9 13.0 19 260-278 259-277 (373)
409 3cqc_A Nuclear pore complex pr 23.2 1.6E+02 0.0054 29.4 7.1 193 143-349 38-263 (270)
410 2chq_A Replication factor C sm 22.8 5.6E+02 0.019 25.3 16.2 18 225-242 241-259 (319)
411 3hra_A Ankyrin repeat family p 22.7 84 0.0029 28.9 4.9 12 368-379 81-92 (201)
412 1w3w_A Annexin A8; coagulation 22.6 6.2E+02 0.021 25.8 16.2 42 483-527 258-299 (327)
413 1wfd_A Hypothetical protein 15 22.3 2.4E+02 0.0083 22.8 6.9 16 477-492 27-42 (93)
414 2fe3_A Peroxide operon regulat 22.3 2.1E+02 0.0071 25.3 7.2 40 473-512 29-68 (145)
415 2xig_A Ferric uptake regulatio 22.2 2.4E+02 0.0083 25.0 7.6 46 322-372 32-77 (150)
416 2fe3_A Peroxide operon regulat 22.2 2.1E+02 0.0071 25.2 7.1 16 260-275 35-50 (145)
417 4gq4_A Menin; tumor suppressor 22.1 6.5E+02 0.022 26.7 11.3 30 429-458 302-331 (489)
418 2f6m_A Suppressor protein STP2 22.0 1.3E+02 0.0043 22.8 4.5 46 213-259 4-49 (65)
419 2cih_A Ferritin heavy chain; a 21.8 73 0.0025 29.7 4.1 13 299-311 66-78 (183)
420 4ets_A Ferric uptake regulatio 21.6 1.6E+02 0.0054 26.8 6.3 57 310-372 27-85 (162)
421 3aji_A 26S proteasome non-ATPa 21.4 1.7E+02 0.0058 27.5 7.0 15 256-270 13-27 (231)
422 3ljn_A Hypothetical protein; a 21.4 2.1E+02 0.0071 29.4 8.2 16 325-340 179-194 (364)
423 3jxi_A Vanilloid receptor-rela 21.1 29 0.00099 34.1 1.2 192 250-455 6-247 (260)
424 1eum_A Ferritin 1; ECFTNA, met 20.7 4.6E+02 0.016 23.5 10.9 158 263-460 4-161 (165)
425 2jul_A Calsenilin; EF-hand, ca 20.7 2.6E+02 0.0089 27.1 8.3 25 431-455 230-254 (256)
426 1q02_A Sequestosome 1; helical 20.7 2.2E+02 0.0074 20.3 5.1 38 450-489 11-48 (52)
427 3e6s_A Ferritin; iron storage, 20.6 86 0.0029 28.8 4.2 18 411-428 50-67 (168)
428 2cih_A Ferritin heavy chain; a 20.6 3E+02 0.01 25.4 8.2 20 332-351 64-83 (183)
429 3aji_A 26S proteasome non-ATPa 20.6 2.4E+02 0.0083 26.3 8.0 13 223-235 15-27 (231)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-38 Score=373.65 Aligned_cols=441 Identities=8% Similarity=-0.024 Sum_probs=386.7
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT 184 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~ 184 (851)
..+..++..+.+.|++++|+.+|++++.. .|+..+++.++.+|.+.|++++|+.+|++++.. ..+..+++.++.+
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 85 DYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFC 159 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHH
Confidence 34678899999999999999999999854 467889999999999999999999999988542 4689999999999
Q ss_pred HHHcCChHHHHHHHHHHHHhC--------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 038852 185 YCDEGKVDEGMNVFRRIIETA--------------PVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYN 250 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~--------------~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~ 250 (851)
|.+.|++++|+++|+++.... +...+..+|+.++.+|.+.|++++|+++|++|++.+.. +...+.
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ 238 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFD 238 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHH
Confidence 999999999999999643221 11235789999999999999999999999999988654 555544
Q ss_pred HH--------------------------------------HHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHH
Q 038852 251 NL--------------------------------------ISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWF 292 (851)
Q Consensus 251 ~L--------------------------------------i~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~ 292 (851)
.+ +.+|.+.|++++|+++|+++.+. ..+..++..++.+|.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHH
Confidence 43 45566789999999999999876 358899999999999
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCCh
Q 038852 293 NQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKF 372 (851)
Q Consensus 293 ~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~ 372 (851)
+.|++++|+++|+++++.+.. +..+|+.++.+|.+.|++++|+++|+++++.. |+ +..+++.++.+|.+.|++
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~----~~~~~~~l~~~~~~~g~~ 389 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH--PE----KAVTWLAVGIYYLCVNKI 389 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TT----SHHHHHHHHHHHHHTTCH
T ss_pred HhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--cc----cHHHHHHHHHHHHHhccH
Confidence 999999999999999988754 56789999999999999999999999999753 33 788999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 038852 373 SEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALEL 452 (851)
Q Consensus 373 ~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~ 452 (851)
++|+++|+++....+. +..+|+.++.+|.+.|++++|+++|+++.+.+. .+..+|+.++.+|.+.|++++|+++
T Consensus 390 ~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 463 (597)
T 2xpi_A 390 SEARRYFSKSSTMDPQ-----FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEY 463 (597)
T ss_dssp HHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999775444 788999999999999999999999999998643 4788999999999999999999999
Q ss_pred HHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhC----CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038852 453 FNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEK----DPKPD--FLIYDVVVRGLCNEGLFDMSKDIVDQM 526 (851)
Q Consensus 453 ~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~----~~~pd--~~~~~~ll~a~~~~g~~~~A~~~~~~m 526 (851)
|+++++.+.. +...+..++.+|.+.|++++|+++|+++.+. +..|+ ..+|..++.+|.+.|++++|+++|+++
T Consensus 464 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (597)
T 2xpi_A 464 LQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG 542 (597)
T ss_dssp HHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999987654 4556677999999999999999999999876 66777 789999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCC
Q 038852 527 MKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAAP 568 (851)
Q Consensus 527 ~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~~~~~ 568 (851)
++.+ +.+..++..++.+|.+.|++++|.++|+++.+..|+.
T Consensus 543 ~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 543 LLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 9876 4578899999999999999999999999998877654
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-35 Score=348.95 Aligned_cols=419 Identities=10% Similarity=0.012 Sum_probs=364.5
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC--------------C
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQA--------------D 170 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~--------------~ 170 (851)
..+..++..+.+.|++++|+.+|++++.. ..+..+++.++.+|.+.|++++|+++|+++.... +
T Consensus 118 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (597)
T 2xpi_A 118 NDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGG 195 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSS
T ss_pred hHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccc
Confidence 56678899999999999999999998643 6789999999999999999999999999643322 2
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH---------------------------------
Q 038852 171 IVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHL--------------------------------- 217 (851)
Q Consensus 171 ~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~L--------------------------------- 217 (851)
...+..+|+.++.+|.+.|++++|+++|+++++.++. +..++..+
T Consensus 196 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 273 (597)
T 2xpi_A 196 IKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK--CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS 273 (597)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHH
T ss_pred cchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch--hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHH
Confidence 2335889999999999999999999999999998766 55554444
Q ss_pred -----HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHH
Q 038852 218 -----TKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWF 292 (851)
Q Consensus 218 -----i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~ 292 (851)
+.+|.+.|++++|+++|+++.+. ..+..+|+.++.+|.+.|++++|+++|+++++.+.. +..++..++.+|.
T Consensus 274 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 350 (597)
T 2xpi_A 274 LYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLH 350 (597)
T ss_dssp HHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHH
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHH
Confidence 44556788999999999999876 358999999999999999999999999999988765 7889999999999
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCCh
Q 038852 293 NQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKF 372 (851)
Q Consensus 293 ~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~ 372 (851)
+.|++++|+++|+++++.. ..+..+|+.++.+|.+.|++++|+++|+++++.. |+ +..+|+.++.+|.+.|++
T Consensus 351 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~----~~~~~~~l~~~~~~~g~~ 423 (597)
T 2xpi_A 351 ESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD--PQ----FGPAWIGFAHSFAIEGEH 423 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----CHHHHHHHHHHHHHHTCH
T ss_pred HhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CC----CHHHHHHHHHHHHHcCCH
Confidence 9999999999999999765 3567899999999999999999999999999853 32 788999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 038852 373 SEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALEL 452 (851)
Q Consensus 373 ~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~ 452 (851)
++|+++|+++....+. +..+|+.++.+|.+.|++++|+++|+++.+... .+..+|+.++.+|.+.|++++|+++
T Consensus 424 ~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 497 (597)
T 2xpi_A 424 DQAISAYTTAARLFQG-----THLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINH 497 (597)
T ss_dssp HHHHHHHHHHHHTTTT-----CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcc-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999876554 788899999999999999999999999987643 3789999999999999999999999
Q ss_pred HHHHHHc----CCccc--hhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038852 453 FNRMVES----GLRVV--VSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQM 526 (851)
Q Consensus 453 ~~~m~~~----~~~~~--~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m 526 (851)
|+++++. +..++ ...+..++.+|.+.|++++|+++|+++.+.+.. +..+|..++.+|.+.|++++|+++|+++
T Consensus 498 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 498 FQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN-DANVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp HHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999986 44555 677788999999999999999999999987533 8899999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHH
Q 038852 527 MKYGVGITPALQDFVRETF 545 (851)
Q Consensus 527 ~~~g~~~~~~~~~~L~~~~ 545 (851)
++.+ +.+...+..+..+|
T Consensus 577 l~~~-p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 577 LAIS-PNEIMASDLLKRAL 594 (597)
T ss_dssp HHHC-TTCHHHHHHHHHTT
T ss_pred HhcC-CCChHHHHHHHHHH
Confidence 9865 23455666665554
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.4e-29 Score=281.68 Aligned_cols=381 Identities=15% Similarity=0.110 Sum_probs=223.5
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 038852 147 AAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGR 226 (851)
Q Consensus 147 ~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~ 226 (851)
..+.+.|++++|++.|+++++..+ .+...+..+..++...|++++|..+++.+++.++. +..+|..++.+|.+.|+
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~--~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEP--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL--LAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHCCC
Confidence 344455555555555555544322 23344455555555555555555555555555433 45555555555555555
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHH
Q 038852 227 IGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKS 306 (851)
Q Consensus 227 ~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 306 (851)
+++|+++|+++++.... +..+|..++.+|.+.|++++|++.|+++++.+.. +..++..+..++...|++++|+++|++
T Consensus 83 ~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555555555554333 4445555555555555555555555555554433 344455555555555666666666655
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCC
Q 038852 307 LMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHP 386 (851)
Q Consensus 307 ~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~ 386 (851)
+++.++ .+..+|+.++.++...|++++|++.|+++++.+ |+ +...+..++.++...|++++|+..|+++....
T Consensus 161 al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 233 (388)
T 1w3b_A 161 AIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PN----FLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233 (388)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TT----CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 555432 234566666666666666666666666666643 22 45666666666666677777776666665544
Q ss_pred CCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchh
Q 038852 387 KSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVS 466 (851)
Q Consensus 387 ~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 466 (851)
+. +..+|..++.+|...|++++|++.|+++++... .+..+|..++.+|.+.|++++|+++|+++++.... +..
T Consensus 234 p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~ 306 (388)
T 1w3b_A 234 PN-----HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HAD 306 (388)
T ss_dssp TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHH
T ss_pred cC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHH
Confidence 43 566666666677777777777777776665422 24556666777777777777777777777665432 333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038852 467 FGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFG 546 (851)
Q Consensus 467 ~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~ 546 (851)
.+..++.++...|++++|+++|+++++... .+..++..++.+|.+.|++++|+++|+++++.. +.....+..++.++.
T Consensus 307 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~ 384 (388)
T 1w3b_A 307 SLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLK 384 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHH
Confidence 444466667777777777777777766532 245666677777777777777777777776643 234455555555555
Q ss_pred hcC
Q 038852 547 KAG 549 (851)
Q Consensus 547 ~~G 549 (851)
+.|
T Consensus 385 ~~~ 387 (388)
T 1w3b_A 385 EMQ 387 (388)
T ss_dssp HTC
T ss_pred Hcc
Confidence 444
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=9.8e-30 Score=282.82 Aligned_cols=384 Identities=18% Similarity=0.160 Sum_probs=339.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc
Q 038852 109 NRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDE 188 (851)
Q Consensus 109 ~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~ 188 (851)
.++..+.+.|++++|+.++++++... +.+...+..+...+...|++++|+.+++.+++... .+..+|..++.+|.+.
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p--~~~~~~~~lg~~~~~~ 80 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP--LLAEAYSNLGNVYKER 80 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHC
Confidence 35678899999999999999988765 44667788888889999999999999999987643 5788999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038852 189 GKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANEL 268 (851)
Q Consensus 189 g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~ 268 (851)
|++++|++.|+++++.++. +..+|..++.++...|++++|++.|+++++.... +..++..++.+|...|++++|+++
T Consensus 81 g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~ 157 (388)
T 1w3b_A 81 GQLQEAIEHYRHALRLKPD--FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHH
Confidence 9999999999999998766 7789999999999999999999999999998665 677888999999999999999999
Q ss_pred HHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 038852 269 FDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQP 348 (851)
Q Consensus 269 ~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~ 348 (851)
|+++++.... +..++..++.+|.+.|++++|++.|+++++.++ .+...|..++.++...|++++|+..|++++...
T Consensus 158 ~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-- 233 (388)
T 1w3b_A 158 YLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-- 233 (388)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Confidence 9999988665 678999999999999999999999999999875 356788999999999999999999999999853
Q ss_pred CCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038852 349 PNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSP 428 (851)
Q Consensus 349 p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 428 (851)
|+ +..++..++.+|.+.|++++|++.|+++....+. +..+|..++.+|.+.|++++|+++|+++++.. ..
T Consensus 234 p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 303 (388)
T 1w3b_A 234 PN----HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-----FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PT 303 (388)
T ss_dssp TT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-----CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TT
T ss_pred cC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cc
Confidence 43 7889999999999999999999999999887655 67889999999999999999999999999863 44
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 038852 429 DVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVR 508 (851)
Q Consensus 429 d~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~ 508 (851)
+..+|..++.+|.+.|++++|+++|+++++.... +...+..++.+|.+.|++++|+++|+++++.... +...|..+..
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~a~~~lg~ 381 (388)
T 1w3b_A 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 381 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHhHHH
Confidence 7889999999999999999999999999987643 4455566899999999999999999999986443 5667777777
Q ss_pred HHHhcC
Q 038852 509 GLCNEG 514 (851)
Q Consensus 509 a~~~~g 514 (851)
.+...|
T Consensus 382 ~~~~~~ 387 (388)
T 1w3b_A 382 TLKEMQ 387 (388)
T ss_dssp HHHHTC
T ss_pred HHHHcc
Confidence 766655
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.1e-25 Score=259.30 Aligned_cols=404 Identities=12% Similarity=0.062 Sum_probs=325.9
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTY 185 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~ 185 (851)
.+......+.+.|++++|+.+|++++... |+..+|..++.+|.+.|++++|+..|+++++..+ .+..+|..++.+|
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP--DYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh--HHHHHHHHHHHHH
Confidence 46778899999999999999999999876 5899999999999999999999999999988643 4678899999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------------------------
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSR------------------------- 240 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~------------------------- 240 (851)
...|++++|+..|+++++.++. +......++..+........+.+.+..+...
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDF--NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSC--CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHhhHHHHHHHHHHHHhcCCC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999988754 4334444444444333333332222111000
Q ss_pred ----------CC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----c--CC------ccchhhHH
Q 038852 241 ----------QL---------GADSLVYNNLISGFLN---LGNLEKANELFDELKQ-----R--CL------VYDGVVNA 285 (851)
Q Consensus 241 ----------g~---------~pd~~~~~~Li~~~~~---~g~~~~A~~~~~~~~~-----~--~~------~~d~~~~~ 285 (851)
.. ..+...+..++..+.. .|++++|+.+|+++++ . .. ..+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 00 1125556666666665 8999999999999988 3 11 22467788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHH
Q 038852 286 TFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNE 365 (851)
Q Consensus 286 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~ 365 (851)
.++.++...|++++|+++|+++++.+.. ..++..++.+|...|++++|+++|++++.... + +..++..++.+
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~----~~~~~~~l~~~ 313 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS--N----NSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT--T----CTHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc--C----CHHHHHHHHHH
Confidence 8899999999999999999999998766 78899999999999999999999999988533 2 67899999999
Q ss_pred HHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 038852 366 CFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVER 445 (851)
Q Consensus 366 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~ 445 (851)
|...|++++|+.+|+++....+. +...+..++.+|...|++++|+.+|+++.+.. ..+..+|..++.+|.+.|+
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 387 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELDPE-----NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKND 387 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSS-----CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCC
Confidence 99999999999999999876555 66789999999999999999999999998753 2357789999999999999
Q ss_pred HHHHHHHHHHHHHcCCccc-----hhHHHHHHHHHHH---cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChH
Q 038852 446 IDDALELFNRMVESGLRVV-----VSFGTKVFNELIT---KGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFD 517 (851)
Q Consensus 446 ~~~A~~~~~~m~~~~~~~~-----~~~~~~L~~~~~~---~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~ 517 (851)
+++|+.+|+++++...... ...+..++.+|.. .|++++|+++|+++++.... +..++..+..+|...|+++
T Consensus 388 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~ 466 (514)
T 2gw1_A 388 FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDID 466 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHH
Confidence 9999999999987643322 2255568899999 99999999999999886533 6788889999999999999
Q ss_pred HHHHHHHHHHHcC
Q 038852 518 MSKDIVDQMMKYG 530 (851)
Q Consensus 518 ~A~~~~~~m~~~g 530 (851)
+|+++|+++++..
T Consensus 467 ~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 467 EAITLFEESADLA 479 (514)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999865
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6e-25 Score=253.01 Aligned_cols=374 Identities=9% Similarity=-0.005 Sum_probs=293.0
Q ss_pred CccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 038852 104 RLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLIN 183 (851)
Q Consensus 104 ~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~ 183 (851)
...+..++..+.+.|++++|+..+++++... +.+..+|..++.+|.+.|++++|+..|+++++..+ .+......++.
T Consensus 39 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~ 115 (514)
T 2gw1_A 39 PVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD--FNDASIEPMLE 115 (514)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS--CCGGGTHHHHH
T ss_pred HHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CccchHHHHHH
Confidence 3467788999999999999999999999876 45778999999999999999999999999987654 23333333333
Q ss_pred HHHHcCChHHHHHHHHHHH----------------------------------HhCCC---------CCCHHHHHHHHHH
Q 038852 184 TYCDEGKVDEGMNVFRRII----------------------------------ETAPV---------GPSSNTYRHLTKG 220 (851)
Q Consensus 184 ~~~~~g~~~~A~~l~~~~~----------------------------------~~~~~---------~p~~~~~~~Li~~ 220 (851)
.+........+.+.+..+. ..... ..+...+..++.+
T Consensus 116 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (514)
T 2gw1_A 116 RNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLS 195 (514)
T ss_dssp HHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHH
Confidence 3333222222222221110 00000 0125556666666
Q ss_pred HHH---cCCHHHHHHHHHHHHh-----c--CC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhH
Q 038852 221 FVD---AGRIGEAVDLLRDMLS-----R--QL------GADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVN 284 (851)
Q Consensus 221 ~~~---~g~~~~A~~l~~~m~~-----~--g~------~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~ 284 (851)
+.. .|++++|+++|+++++ . .. ..+..++..++.++...|++++|+.+|+++++.+.. ..++
T Consensus 196 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~ 273 (514)
T 2gw1_A 196 NLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSY 273 (514)
T ss_dssp HHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHH
T ss_pred HHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHH
Confidence 665 8999999999999988 3 11 113567888999999999999999999999988765 8888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHH
Q 038852 285 ATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVN 364 (851)
Q Consensus 285 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~ 364 (851)
..++.+|...|++++|+++|+++++.+.. +..+|..++.+|...|++++|+.+|+++++.... +..++..++.
T Consensus 274 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~ 346 (514)
T 2gw1_A 274 IYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE------NIFPYIQLAC 346 (514)
T ss_dssp HHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS------CSHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh------hHHHHHHHHH
Confidence 89999999999999999999999987653 4468888999999999999999999999985433 6779999999
Q ss_pred HHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHH
Q 038852 365 ECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLS-PD----VTTFRTLIDA 439 (851)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~~~~~Ll~~ 439 (851)
+|...|++++|+.+|+++....+. +..+|..++.+|...|++++|+.+|+++.+.... ++ ..+|..++.+
T Consensus 347 ~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 421 (514)
T 2gw1_A 347 LAYRENKFDDCETLFSEAKRKFPE-----APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATL 421 (514)
T ss_dssp HTTTTTCHHHHHHHHHHHHHHSTT-----CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHccc-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 999999999999999998776554 5678899999999999999999999998764211 11 3488999999
Q ss_pred HHH---cCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 038852 440 YLK---VERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKD 495 (851)
Q Consensus 440 ~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~ 495 (851)
|.. .|++++|+++|+++++.+... ...+..++.+|...|++++|+++|+++++..
T Consensus 422 ~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 422 LTRNPTVENFIEATNLLEKASKLDPRS-EQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHTSCCTTHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhhhhcCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 999 999999999999999876443 4455568899999999999999999998864
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=1.7e-24 Score=245.18 Aligned_cols=311 Identities=15% Similarity=0.222 Sum_probs=243.2
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038852 137 PTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRH 216 (851)
Q Consensus 137 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~ 216 (851)
.+...+..++..|.+.|++++|+.+|+++++... .+..+|..++.+|...|++++|+.+|+++++.++. +..+|..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 99 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP--DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD--FTAARLQ 99 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--cHHHHHH
Confidence 4567888889999999999999999999887533 46888899999999999999999999999988766 7788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCH---HHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCccch
Q 038852 217 LTKGFVDAGRIGEAVDLLRDMLSRQLGADS---LVYNNL------------ISGFLNLGNLEKANELFDELKQRCLVYDG 281 (851)
Q Consensus 217 Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~---~~~~~L------------i~~~~~~g~~~~A~~~~~~~~~~~~~~d~ 281 (851)
++.+|.+.|++++|+++|+++++.... +. .++..+ +..|...|++++|+++|+++++.... +.
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 177 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DA 177 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-Ch
Confidence 999999999999999999999887543 44 555555 44588889999999999988877654 67
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHH
Q 038852 282 VVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNI 361 (851)
Q Consensus 282 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~ 361 (851)
.++..++.+|.+.|++++|+++|+++++.+. .+..+|..++.+|...|++++|+.+|++++... |+ +...+..
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~----~~~~~~~ 250 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QD----HKRCFAH 250 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----CHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC----hHHHHHH
Confidence 7888888899999999999999998887754 356788889999999999999999999988743 32 4555544
Q ss_pred H------------HHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038852 362 M------------VNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPD 429 (851)
Q Consensus 362 L------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 429 (851)
+ +.+|.+.|++++|+++|+++....+... ......|..++.++.+.|++++|+.+++++++.. ..+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~ 328 (450)
T 2y4t_A 251 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIA-EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDN 328 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSH-HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccc
Confidence 4 7778888888888888888766543310 0003467778888888888888888888877642 235
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Q 038852 430 VTTFRTLIDAYLKVERIDDALELFNRMVESGLR 462 (851)
Q Consensus 430 ~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~ 462 (851)
..+|..++.+|...|++++|+++|+++++....
T Consensus 329 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 329 VNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 777888888888888888888888888876543
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=1.9e-24 Score=244.73 Aligned_cols=347 Identities=11% Similarity=0.118 Sum_probs=280.2
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038852 158 AVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDM 237 (851)
Q Consensus 158 A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m 237 (851)
+...|.+++... ..+...|..++..|.+.|++++|+.+|+++++.++. +..+|..++.+|...|++++|+++|+++
T Consensus 11 ~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 11 VDLGTENLYFQS--MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD--NYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccccc--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 334444444322 235778999999999999999999999999998765 7899999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccch---hhHHHH------------HHHHHHcCCHHHHHH
Q 038852 238 LSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDG---VVNATF------------MEWWFNQGKDKEAMQ 302 (851)
Q Consensus 238 ~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~---~~~~~l------------i~~~~~~g~~~~A~~ 302 (851)
++.+.. +..++..++.+|.+.|++++|+++|+++++.+.. +. ..+..+ +..+.+.|++++|++
T Consensus 87 l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 87 IQLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 998766 7899999999999999999999999999987654 33 444444 455899999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 038852 303 SYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382 (851)
Q Consensus 303 l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 382 (851)
+|+++++... .+..++..++.+|.+.|++++|+++|+++++.... +..++..++.+|...|++++|+.+|+++
T Consensus 165 ~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 165 FLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKND------NTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999998764 46688999999999999999999999999885332 7889999999999999999999999999
Q ss_pred ccCCCCCCCccCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHcCC
Q 038852 383 GTHPKSKPFAMDVAGYNNI------------IARYCENEMLEEAEKLLREISTKSLSPD-----VTTFRTLIDAYLKVER 445 (851)
Q Consensus 383 ~~~~~~~~~~~d~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~pd-----~~~~~~Ll~~~~~~g~ 445 (851)
....+. +...+..+ +.+|.+.|++++|+++|+++++. .|+ ..+|..++.++.+.|+
T Consensus 238 ~~~~p~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~ 310 (450)
T 2y4t_A 238 LKLDQD-----HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEK 310 (450)
T ss_dssp HHHCTT-----CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTC
T ss_pred HHhCCC-----hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCC
Confidence 766554 55555555 88899999999999999999875 334 4578889999999999
Q ss_pred HHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH------------HHhc
Q 038852 446 IDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRG------------LCNE 513 (851)
Q Consensus 446 ~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a------------~~~~ 513 (851)
+++|+.+|+++++.... +...+..++.+|...|++++|++.|+++++.... +..++..+..+ |...
T Consensus 311 ~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~y~~l 388 (450)
T 2y4t_A 311 PVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQKRDYYKIL 388 (450)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHHSCCSGGGS
T ss_pred HHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhcccchhHHHHh
Confidence 99999999999987643 3455556899999999999999999999986443 55666666533 3333
Q ss_pred C-----ChHHHHHHHHHH
Q 038852 514 G-----LFDMSKDIVDQM 526 (851)
Q Consensus 514 g-----~~~~A~~~~~~m 526 (851)
| +.+++.+.|+++
T Consensus 389 g~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 389 GVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp CSSTTCCTTHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHH
Confidence 4 556777777763
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=2.7e-24 Score=249.24 Aligned_cols=402 Identities=13% Similarity=0.091 Sum_probs=282.1
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT 184 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~ 184 (851)
..+..+...+.+.|++++|+.+|++++... +.+..+|..++.+|.+.|++++|++.|+++++..+ .+..+|..++.+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~ 102 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP--DHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--chHHHHHHHHHH
Confidence 456778889999999999999999988775 44788888999999999999999999999887643 467788899999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCCHH-----------
Q 038852 185 YCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQ------LGADSL----------- 247 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g------~~pd~~----------- 247 (851)
|...|++++|++.|+ .+...+. .....+..+...+...+|++++++++... ..++..
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLNGD-----FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHcCCHHHHHHHHH-HHhcCCC-----CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 999999999999996 4443322 22333455666667788999998886641 111221
Q ss_pred -------------------HHHHHHHHHHhc--------CCHHHHHHHHHHHHhcCCccc------hhhHHHHHHHHHHc
Q 038852 248 -------------------VYNNLISGFLNL--------GNLEKANELFDELKQRCLVYD------GVVNATFMEWWFNQ 294 (851)
Q Consensus 248 -------------------~~~~Li~~~~~~--------g~~~~A~~~~~~~~~~~~~~d------~~~~~~li~~~~~~ 294 (851)
....+...+... |++++|+.+|+++++...... ..++..+...+...
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhc
Confidence 122222222211 367778888887776654411 22456666777778
Q ss_pred CCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHH
Q 038852 295 GKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSE 374 (851)
Q Consensus 295 g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~ 374 (851)
|++++|+++|+++++.+ ++..+|..++.+|...|++++|+++|+++++.... +..++..++.+|...|++++
T Consensus 257 ~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE------YPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC------CHHHHHHHHHHHHhcCCHHH
Confidence 88888888888887764 45777777888888888888888888888775332 67778888888888888888
Q ss_pred HHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 038852 375 AIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFN 454 (851)
Q Consensus 375 A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~ 454 (851)
|+++|+++....+. +...|..++.+|...|++++|+.+|+++++.. ..+..+|..++.+|...|++++|+++|+
T Consensus 329 A~~~~~~a~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 329 AKEDFQKAQSLNPE-----NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp HHHHHHHHHHHCTT-----CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 88888887765444 55677778888888888888888888877653 2356677778888888888888888888
Q ss_pred HHHHcCCcc-----chhHHHHHHHHHHHc----------CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 038852 455 RMVESGLRV-----VVSFGTKVFNELITK----------GKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMS 519 (851)
Q Consensus 455 ~m~~~~~~~-----~~~~~~~L~~~~~~~----------g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A 519 (851)
++++.+... ....+..+..+|... |++++|+.+|+++++.... +..++..+..+|...|++++|
T Consensus 403 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp HHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHH
Confidence 877643211 122223345666666 8888888888888776433 567777788888888888888
Q ss_pred HHHHHHHHHcC
Q 038852 520 KDIVDQMMKYG 530 (851)
Q Consensus 520 ~~~~~~m~~~g 530 (851)
+++|+++++..
T Consensus 482 ~~~~~~al~~~ 492 (537)
T 3fp2_A 482 IELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 88888887754
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=3.2e-24 Score=248.64 Aligned_cols=405 Identities=12% Similarity=0.092 Sum_probs=319.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLT 218 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li 218 (851)
...|..++..+.+.|++++|+++|+++++..+ .+..+|..++.+|...|++++|++.|+++++.++. +..+|..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la 100 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP--NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD--HSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--hHHHHHHHH
Confidence 46778899999999999999999999988653 47889999999999999999999999999999876 888999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----------------------
Q 038852 219 KGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRC---------------------- 276 (851)
Q Consensus 219 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~---------------------- 276 (851)
.++...|++++|++.|+ .+..... .....+..+...+..++|+.++++++...
T Consensus 101 ~~~~~~g~~~~A~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLS-VLSLNGD----FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred HHHHHcCCHHHHHHHHH-HHhcCCC----CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 99999999999999996 5443222 22223445555566677777777775420
Q ss_pred -----------Cccc---hhhHHHHHHHHH--------HcCCHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHh
Q 038852 277 -----------LVYD---GVVNATFMEWWF--------NQGKDKEAMQSYKSLMERNFRMT------PATCNTLLEVLLK 328 (851)
Q Consensus 277 -----------~~~d---~~~~~~li~~~~--------~~g~~~~A~~l~~~~~~~~~~~~------~~~~~~Li~~~~~ 328 (851)
...+ ......+...+. ..|++++|+.+|+++++.+.... ..++..++..+..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh
Confidence 1111 123333333322 23589999999999998765432 2357778889999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhc
Q 038852 329 HEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCEN 408 (851)
Q Consensus 329 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~ 408 (851)
.|++++|+++|+++++. .| +..++..++.+|...|++++|+++|+++....+. +..+|..++.+|...
T Consensus 256 ~~~~~~A~~~~~~~~~~--~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINL--HP-----TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-----YPPTYYHRGQMYFIL 323 (537)
T ss_dssp TTCHHHHHHHHHHHHHH--CC-----CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHhc--CC-----CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-----CHHHHHHHHHHHHhc
Confidence 99999999999999985 34 4678999999999999999999999999876555 788899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHH
Q 038852 409 EMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPIL 488 (851)
Q Consensus 409 g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll 488 (851)
|++++|++.|+++++... .+..+|..++.+|...|++++|+++|+++++..... ...+..++.+|...|++++|+++|
T Consensus 324 ~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 401 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL-PEVPTFFAEILTDRGDFDTAIKQY 401 (537)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-THHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999987643 256789999999999999999999999999987544 444556899999999999999999
Q ss_pred HHHhhCC-----CCCCHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 038852 489 TKMGEKD-----PKPDFLIYDVVVRGLCNE----------GLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEE 553 (851)
Q Consensus 489 ~~m~~~~-----~~pd~~~~~~ll~a~~~~----------g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~e 553 (851)
+++++.. .......+..+..++... |++++|+.+|+++++.. +.+...+..++.+|.+.|++++
T Consensus 402 ~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 402 DIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp HHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHH
Confidence 9987642 222344466667778888 99999999999999865 3567888889999999999999
Q ss_pred HHHHHHhhhhcCCC
Q 038852 554 IERVLNADRWGYAA 567 (851)
Q Consensus 554 A~~ll~~~~~~~~~ 567 (851)
|+++|+++....+.
T Consensus 481 A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 481 AIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhCCC
Confidence 99999998876654
No 11
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.93 E-value=9.9e-25 Score=248.79 Aligned_cols=205 Identities=15% Similarity=0.184 Sum_probs=172.1
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC---------hH
Q 038852 123 ASYLARQAVFSRIRPT-VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGK---------VD 192 (851)
Q Consensus 123 A~~l~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~---------~~ 192 (851)
+..+.+++.+.+.... ...++.+|++|++.|++++|+++|++|.+ .|+.||.++||+||.+|++.+. ++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~-~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARR-NGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 3445555555554443 34688899999999999999999999955 5899999999999999987654 68
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038852 193 EGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDEL 272 (851)
Q Consensus 193 ~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~ 272 (851)
+|.++|++|.+.+ +.||..+|+.||.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 88 ~A~~lf~~M~~~G-~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 88 RGFDIFKQMIVDK-VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 8999999997754 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Q 038852 273 KQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKH 329 (851)
Q Consensus 273 ~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~ 329 (851)
.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+.+..|+..||+.|+..|+..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999998888753
No 12
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.93 E-value=1.8e-24 Score=246.65 Aligned_cols=210 Identities=12% Similarity=0.129 Sum_probs=180.6
Q ss_pred CChhH-HHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----
Q 038852 153 KRYDD-AVALFKYFFDQADIVPN-IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGR---- 226 (851)
Q Consensus 153 g~~~~-A~~l~~~~~~~~~~~pd-~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~---- 226 (851)
|+... +..+++++ ++.+.... ...++.+|++|++.|++++|+++|++|.+.+ +.||..+|+.||.+|.+.+.
T Consensus 3 G~~~s~~e~L~~~~-~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~G-v~pd~~tyn~Li~~c~~~~~~~~~ 80 (501)
T 4g26_A 3 GHMASPSENLSRKA-KKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNG-VQLSQYHYNVLLYVCSLAEAATES 80 (501)
T ss_dssp ----------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHTTCCCCSSS
T ss_pred ccccchHHHHHHHH-HHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhCCchhhh
Confidence 34433 34444444 33344333 4468899999999999999999999998875 99999999999999987654
Q ss_pred -----HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHH
Q 038852 227 -----IGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAM 301 (851)
Q Consensus 227 -----~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~ 301 (851)
+++|.++|++|.+.|+.||..+|++||.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.|++++|.
T Consensus 81 ~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~ 160 (501)
T 4g26_A 81 SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAY 160 (501)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHc
Q 038852 302 QSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKH 369 (851)
Q Consensus 302 ~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~ 369 (851)
++|++|.+.|+.||..+|+.||.+|++.|+.++|.++|++|.+.+..| +..||+.++..|+..
T Consensus 161 ~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~p-----s~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 161 EVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQV-----SKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSB-----CHHHHHHHHHHHHSH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCc-----CHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999 889999999988753
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=1.5e-21 Score=212.88 Aligned_cols=314 Identities=11% Similarity=0.093 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLT 218 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li 218 (851)
+..+..++..+...|++++|+.+|+++++... .+..+|..++.+|...|++++|+..|+++++.++. +..+|..++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~ 78 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP--DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD--FTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--cchHHHHHH
Confidence 44556666666666666666666666655432 24556666666666666666666666666665544 555666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcC
Q 038852 219 KGFVDAGRIGEAVDLLRDMLSRQL---GADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQG 295 (851)
Q Consensus 219 ~~~~~~g~~~~A~~l~~~m~~~g~---~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g 295 (851)
.+|...|++++|+++|+++++... . +...+..+...+. ...+..++..+...|
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQE-EKEAESQLVKADE-----------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHH-HHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTT
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccC-hHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcc
Confidence 666666666666666666665432 1 2233322221110 011222345566666
Q ss_pred CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHH
Q 038852 296 KDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEA 375 (851)
Q Consensus 296 ~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A 375 (851)
++++|+++|+++++... .+..++..++.++...|++++|+++|+++++.. |+ +..++..++.+|...|++++|
T Consensus 135 ~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~----~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 135 DYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK--SD----NTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--SC----CHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC----CHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666543 344566666666677777777777777666532 22 566666667777777777777
Q ss_pred HHHHHHhccCCCCCCCccCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHH
Q 038852 376 IETFKKAGTHPKSKPFAMDVAGYN------------NIIARYCENEMLEEAEKLLREISTKSLSPDV----TTFRTLIDA 439 (851)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~d~~~~~------------~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~~~~Ll~~ 439 (851)
+.+|+++....+. +...+. .++..+.+.|++++|+++|+++.+.... +. ..+..++.+
T Consensus 208 ~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~ 281 (359)
T 3ieg_A 208 LSEVRECLKLDQD-----HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHC 281 (359)
T ss_dssp HHHHHHHHHHCTT-----CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCcc-----chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHH
Confidence 7776666554333 222222 1234445555555555555555443211 11 123334445
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 038852 440 YLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEK 494 (851)
Q Consensus 440 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~ 494 (851)
|...|++++|+++|+++++.+.. +...+..++.+|...|++++|++.|+++++.
T Consensus 282 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 282 FSKDEKPVEAIRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 55555555555555555544322 2222333444555555555555555555443
No 14
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.92 E-value=2.6e-20 Score=213.79 Aligned_cols=364 Identities=13% Similarity=0.067 Sum_probs=306.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----cCChHHHH
Q 038852 124 SYLARQAVFSRIRPTVFTCNAIIAAMYR----AKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCD----EGKVDEGM 195 (851)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~----~g~~~~A~ 195 (851)
+..+++....+ +...+..|...|.. .+++++|+.+|+++.+. -+...+..|...|.. .+++++|+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 34444444433 67788888888888 89999999999998764 367888899999998 89999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 038852 196 NVFRRIIETAPVGPSSNTYRHLTKGFVD----AGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLN----LGNLEKANE 267 (851)
Q Consensus 196 ~l~~~~~~~~~~~p~~~~~~~Li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~----~g~~~~A~~ 267 (851)
++|+++.+.+ +...+..|..+|.. .+++++|+++|+++.+.| +...+..|+.+|.. .+++++|++
T Consensus 100 ~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 100 IWYKKAALKG----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 9999998764 77788889999988 789999999999998875 67888889999987 789999999
Q ss_pred HHHHHHhcCCccchhhHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----CCCHHHHHHHH
Q 038852 268 LFDELKQRCLVYDGVVNATFMEWWFN----QGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLK----HEKKEEAQALF 339 (851)
Q Consensus 268 ~~~~~~~~~~~~d~~~~~~li~~~~~----~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~----~g~~~~A~~l~ 339 (851)
+|+++.+.+ +...+..+..+|.. .+++++|+++|++..+.+ +...+..|..+|.. .+++++|+++|
T Consensus 173 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 173 WYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999998864 67788888888888 899999999999998875 45778888888886 78999999999
Q ss_pred HHHHHcCCCCCCCccCHHHHHHHHHHHHH----cCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhc-----CC
Q 038852 340 EQMLDNHQPPNIQAVNSDTFNIMVNECFK----HGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCEN-----EM 410 (851)
Q Consensus 340 ~~m~~~~~~p~~~~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~-----g~ 410 (851)
+++.+.+ +...+..|+.+|.. .+++++|+++|+++.+.. +...+..|..+|... ++
T Consensus 247 ~~a~~~~--------~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~-------~~~a~~~Lg~~y~~~~~g~~~~ 311 (490)
T 2xm6_A 247 SQSAEQG--------NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG-------NSDGQYYLAHLYDKGAEGVAKN 311 (490)
T ss_dssp HHHHTTT--------CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT-------CHHHHHHHHHHHHHCBTTBCCC
T ss_pred HHHHHCC--------CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHcCCCCCcCC
Confidence 9998753 56788899999988 899999999999987542 677888888888887 89
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCccchhHHHHHHHHHHH----cCCHHH
Q 038852 411 LEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVE---RIDDALELFNRMVESGLRVVVSFGTKVFNELIT----KGKVAE 483 (851)
Q Consensus 411 ~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~----~g~~~~ 483 (851)
+++|+.+|++..+.+ +...+..|+.+|...| ++++|+++|+++.+.+ +...+..|..+|.. .+++++
T Consensus 312 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 385 (490)
T 2xm6_A 312 REQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQ 385 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 999999999998864 6678888998888866 7899999999999875 34444558888888 899999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCC
Q 038852 484 CAPILTKMGEKDPKPDFLIYDVVVRGLCN----EGLFDMSKDIVDQMMKYGV 531 (851)
Q Consensus 484 A~~ll~~m~~~~~~pd~~~~~~ll~a~~~----~g~~~~A~~~~~~m~~~g~ 531 (851)
|+++|++..+.+ +...+..|...|.+ .+++++|++.|+++.+.+.
T Consensus 386 A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 386 AAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 999999998875 67788888888888 8999999999999998763
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=2.1e-21 Score=211.62 Aligned_cols=319 Identities=14% Similarity=0.153 Sum_probs=220.4
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTY 185 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~ 185 (851)
.+..+...+...|++++|+.+|++++... +.+..++..++.++...|++++|+..|+++++... .+..+|..++.+|
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM--DFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CcchHHHHHHHHH
Confidence 46778899999999999999999999875 44788999999999999999999999999987643 3678899999999
Q ss_pred HHcCChHHHHHHHHHHHHhCC---CCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 038852 186 CDEGKVDEGMNVFRRIIETAP---VGPSSNTYRHL------------TKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYN 250 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~---~~p~~~~~~~L------------i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~ 250 (851)
...|++++|+..|+++++..+ . +...+..+ +..+...|++++|+++|+++++.... +..++.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 158 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQE--EKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRE 158 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccC--hHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHH
Confidence 999999999999999998654 3 45555555 35555566666666666666655433 555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC
Q 038852 251 NLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHE 330 (851)
Q Consensus 251 ~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g 330 (851)
.++.+|...|++++|+++|+++++.... +..++..++.+|...|++++|++.|+++++.... +...+..+
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~-------- 228 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHY-------- 228 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHH--------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHH--------
Confidence 6666666666666666666665554433 4445555555555555555555555555444321 11111111
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCC
Q 038852 331 KKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEM 410 (851)
Q Consensus 331 ~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~ 410 (851)
..+. .......++..+.+.|++++|+++|+++....+... ......+..++.++...|+
T Consensus 229 ---------~~~~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 229 ---------KQVK-----------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVA-EYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp ---------HHHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSH-HHHHHHHHHHHHHHHHTTC
T ss_pred ---------HHHH-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHHHHHHccC
Confidence 1100 011233456778888888888888888876544311 0011335567788888899
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Q 038852 411 LEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLR 462 (851)
Q Consensus 411 ~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~ 462 (851)
+++|+++|+++++.. ..+..+|..++.+|...|++++|+++|+++++.+..
T Consensus 288 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 288 PVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 999999998888752 236778888888999999999999999998887643
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.91 E-value=1.2e-19 Score=208.33 Aligned_cols=365 Identities=10% Similarity=0.041 Sum_probs=315.9
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHH
Q 038852 157 DAVALFKYFFDQADIVPNIVSYNNLINTYCD----EGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVD----AGRIG 228 (851)
Q Consensus 157 ~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~----~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~----~g~~~ 228 (851)
.+++.++...+. -+...+..|...|.. .+++++|+..|+++.+.+ +..++..|...|.. .++++
T Consensus 25 ~~~~~~~~~a~~----g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~ 96 (490)
T 2xm6_A 25 VNLEQLKQKAES----GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYA 96 (490)
T ss_dssp CCHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHH
Confidence 345666665442 378889999999998 899999999999998864 77899999999999 99999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHH----cCCHHHH
Q 038852 229 EAVDLLRDMLSRQLGADSLVYNNLISGFLN----LGNLEKANELFDELKQRCLVYDGVVNATFMEWWFN----QGKDKEA 300 (851)
Q Consensus 229 ~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~----~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~----~g~~~~A 300 (851)
+|+++|+++.+.| +...+..|+.+|.. .+++++|+++|+++.+.+ +...+..|..+|.. .+++++|
T Consensus 97 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A 170 (490)
T 2xm6_A 97 QAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMA 170 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999999999875 77888889999998 889999999999998875 56778888888888 8899999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHH----cCCh
Q 038852 301 MQSYKSLMERNFRMTPATCNTLLEVLLK----HEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFK----HGKF 372 (851)
Q Consensus 301 ~~l~~~~~~~~~~~~~~~~~~Li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~----~g~~ 372 (851)
+++|+++.+.+ +...+..|..+|.. .+++++|+++|+++.+.+ +..++..++.+|.. .+++
T Consensus 171 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~y~~g~g~~~~~ 239 (490)
T 2xm6_A 171 REWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG--------DELGQLHLADMYYFGIGVTQDY 239 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHcCCCCCCCH
Confidence 99999999875 56888889999998 899999999999998854 56789999999987 8999
Q ss_pred HHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----
Q 038852 373 SEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCE----NEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKV----- 443 (851)
Q Consensus 373 ~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~----- 443 (851)
++|+++|+++.+.. +...+..|..+|.. .+++++|+++|++..+.+ +...+..|+.+|...
T Consensus 240 ~~A~~~~~~a~~~~-------~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~ 309 (490)
T 2xm6_A 240 TQSRVLFSQSAEQG-------NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVA 309 (490)
T ss_dssp HHHHHHHHHHHTTT-------CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBC
T ss_pred HHHHHHHHHHHHCC-------CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCc
Confidence 99999999987642 67788889999988 899999999999998763 677888899999887
Q ss_pred CCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcC---CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCh
Q 038852 444 ERIDDALELFNRMVESGLRVVVSFGTKVFNELITKG---KVAECAPILTKMGEKDPKPDFLIYDVVVRGLCN----EGLF 516 (851)
Q Consensus 444 g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g---~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~----~g~~ 516 (851)
+++++|+.+|+++.+.+. ...+..+..+|...| ++++|+++|++..+.+ +...+..|...|.. .+++
T Consensus 310 ~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~ 383 (490)
T 2xm6_A 310 KNREQAISWYTKSAEQGD---ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDE 383 (490)
T ss_dssp CCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 899999999999999763 334445778887766 8999999999999874 77888889999988 8999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhhhcC
Q 038852 517 DMSKDIVDQMMKYGVGITPALQDFVRETFGK----AGRGEEIERVLNADRWGY 565 (851)
Q Consensus 517 ~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~----~G~~~eA~~ll~~~~~~~ 565 (851)
++|+++|+++.+.+ +...+..|..+|.+ .+++++|.++|++.....
T Consensus 384 ~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 384 QQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 99999999999876 57788889999998 899999999999987654
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.90 E-value=1.1e-19 Score=210.74 Aligned_cols=410 Identities=10% Similarity=0.038 Sum_probs=273.9
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038852 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHL 217 (851)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~L 217 (851)
|...|..++. +.+.|++++|+.+|+++++.. ..+...|..++..+.+.|++++|+.+|+++++.. |+...|..+
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~---p~~~lw~~~ 85 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV---LHIDLWKCY 85 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC---CCHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CChHHHHHH
Confidence 5566666665 355666666666666665532 2345566666666666666666666666666543 355555555
Q ss_pred HHHH-HHcCCHHHHHH----HHHHHHhc-CCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhcCCccch
Q 038852 218 TKGF-VDAGRIGEAVD----LLRDMLSR-QLGA-DSLVYNNLISGFLN---------LGNLEKANELFDELKQRCLVYDG 281 (851)
Q Consensus 218 i~~~-~~~g~~~~A~~----l~~~m~~~-g~~p-d~~~~~~Li~~~~~---------~g~~~~A~~~~~~~~~~~~~~d~ 281 (851)
+... ...|++++|.+ +|+++++. |..+ +...|..++....+ .|++++|+.+|+++++.......
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 5422 23455544443 55554432 2221 34555555555443 45666666666666652111111
Q ss_pred hhHHHHHHHH-------------HHcCCHHHHHHHHHHHH------Hhc---CCCC--------HHHHHHHHHHHHhC--
Q 038852 282 VVNATFMEWW-------------FNQGKDKEAMQSYKSLM------ERN---FRMT--------PATCNTLLEVLLKH-- 329 (851)
Q Consensus 282 ~~~~~li~~~-------------~~~g~~~~A~~l~~~~~------~~~---~~~~--------~~~~~~Li~~~~~~-- 329 (851)
.+|....... .+.+++++|..+++++. +.. +.++ ...|...+......
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 2222222111 12345677777776532 211 1222 24566555443332
Q ss_pred --CCH----HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHH-------cCChH-------HHHHHHHHhcc-CCCC
Q 038852 330 --EKK----EEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFK-------HGKFS-------EAIETFKKAGT-HPKS 388 (851)
Q Consensus 330 --g~~----~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~-------~g~~~-------~A~~~~~~~~~-~~~~ 388 (851)
++. ++++.+|++++... |+ +..+|..++..+.+ .|+++ +|+.+|+++.. ..+.
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~--p~----~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~ 319 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVL--GH----HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK 319 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHH--TT----CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS
T ss_pred cCCcchhHHHHHHHHHHHHHHhC--CC----CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc
Confidence 232 47888999999853 33 78899999999886 79987 99999999986 4443
Q ss_pred CCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchh
Q 038852 389 KPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSP-DV-TTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVS 466 (851)
Q Consensus 389 ~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~-~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 466 (851)
+...|..++..+.+.|++++|..+|+++++. .| +. .+|..++..+.+.|++++|+++|+++++........
T Consensus 320 -----~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~ 392 (530)
T 2ooe_A 320 -----NMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV 392 (530)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHH
T ss_pred -----cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHH
Confidence 7889999999999999999999999999985 34 33 589999999999999999999999999865432222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-C--CCHHHHHHHHH
Q 038852 467 FGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGV-G--ITPALQDFVRE 543 (851)
Q Consensus 467 ~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~-~--~~~~~~~~L~~ 543 (851)
+.......+...|++++|..+|+++++.... +...|..++..+.+.|+.++|+.+|++++..+. . ....++...+.
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~ 471 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 471 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 2222222344689999999999999886432 678899999999999999999999999998642 2 23457878888
Q ss_pred HHHhcCCHHHHHHHHHhhhhcCCC
Q 038852 544 TFGKAGRGEEIERVLNADRWGYAA 567 (851)
Q Consensus 544 ~~~~~G~~~eA~~ll~~~~~~~~~ 567 (851)
...+.|+.+.+..+++++...+|+
T Consensus 472 ~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 472 FESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCch
Confidence 899999999999999999887773
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=1.6e-20 Score=202.35 Aligned_cols=284 Identities=15% Similarity=0.035 Sum_probs=183.0
Q ss_pred CccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 038852 104 RLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLIN 183 (851)
Q Consensus 104 ~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~ 183 (851)
...+..++..+...|++++|+.+|++++.... .+...+..++.++...|++++|+.+|+++++... .+..+|..++.
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~ 98 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLYP--SNPVSWFAVGC 98 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc--CCHHHHHHHHH
Confidence 34556667777777777777777777766542 2344555566666777777777777777766432 24556667777
Q ss_pred HHHHcC-ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 038852 184 TYCDEG-KVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNL 262 (851)
Q Consensus 184 ~~~~~g-~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~ 262 (851)
+|...| ++++|+++|+++++.++. +..+|..++.++...|++++|+++|+++++.... +...+..++.+|...|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKT--YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTT--CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 777777 777777777777766544 4556777777777777777777777777766444 455566677777777777
Q ss_pred HHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHhCCCHHH
Q 038852 263 EKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNF--------RMTPATCNTLLEVLLKHEKKEE 334 (851)
Q Consensus 263 ~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~--------~~~~~~~~~Li~~~~~~g~~~~ 334 (851)
++|+++|+++++.... +..++..++.+|...|++++|+++|+++++... .....+|..++.+|...|++++
T Consensus 176 ~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 7777777777665544 556666666667777777777777766665421 1223456666666666666666
Q ss_pred HHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHH
Q 038852 335 AQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARY 405 (851)
Q Consensus 335 A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~ 405 (851)
|+++|+++++... + +..++..++.+|.+.|++++|+++|+++....+. +...+..+..++
T Consensus 255 A~~~~~~a~~~~~--~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~ 314 (330)
T 3hym_B 255 ALDYHRQALVLIP--Q----NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-----DTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHST--T----CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-----CHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCc--c----chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-----chHHHHHHHHHH
Confidence 6666666665432 2 4556666666666666666666666666554443 555555555555
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=7.6e-21 Score=204.87 Aligned_cols=291 Identities=11% Similarity=0.041 Sum_probs=191.8
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038852 137 PTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRH 216 (851)
Q Consensus 137 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~ 216 (851)
.+...+..++..+...|++++|+++|+++++.... +..++..++.++...|++++|+.+|+++++.++. +..+|..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~ 95 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF--HASCLPVHIGTLVELNKANELFYLSHKLVDLYPS--NPVSWFA 95 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--STHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC--CHHHHHH
Confidence 34455666777777778888888888887765442 3344556667777788888888888888777655 5667777
Q ss_pred HHHHHHHcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcC
Q 038852 217 LTKGFVDAG-RIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQG 295 (851)
Q Consensus 217 Li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g 295 (851)
++.++...| ++++|+++|+++++.... +..+|..++.+|...|++++|+++|+++++.... +...+..++.+|...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHh
Confidence 888888888 788888888888776544 5667777888888888888888888877776544 4455566777777777
Q ss_pred CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---CCccCHHHHHHHHHHHHHcCCh
Q 038852 296 KDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPN---IQAVNSDTFNIMVNECFKHGKF 372 (851)
Q Consensus 296 ~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~---~~~~~~~~~~~L~~~~~~~g~~ 372 (851)
++++|+++|+++++... .+..++..++.++...|++++|+.+|+++++...... ....+..++..++.+|...|++
T Consensus 174 ~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 77777777777776653 3456666677777777777777777777665321000 0001345666666666666666
Q ss_pred HHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038852 373 SEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAY 440 (851)
Q Consensus 373 ~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~ 440 (851)
++|+++|+++....+. +..+|..++.+|...|++++|++.|+++++.. ..+...+..++.++
T Consensus 253 ~~A~~~~~~a~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 253 AEALDYHRQALVLIPQ-----NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHHHSTT-----CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcc-----chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 6666666666554333 45556666666666666666666666665432 12455555555555
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.88 E-value=3.8e-21 Score=211.19 Aligned_cols=293 Identities=14% Similarity=0.089 Sum_probs=189.6
Q ss_pred HHHcCChhHHHH-HHHHHHHcCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 038852 149 MYRAKRYDDAVA-LFKYFFDQADIVP--NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAG 225 (851)
Q Consensus 149 ~~~~g~~~~A~~-l~~~~~~~~~~~p--d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g 225 (851)
+...|++++|++ .|++.+......+ +...+..++..|...|++++|+.+|+++++.++. +..+|..++.+|...|
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK--HMEAWQYLGTTQAENE 112 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT--CHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCc
Confidence 344578889988 8887655433222 3456778888999999999999999999988765 7788999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHH--------------HHHHH
Q 038852 226 RIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNAT--------------FMEWW 291 (851)
Q Consensus 226 ~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~--------------li~~~ 291 (851)
++++|+++|+++++.... +..++..++.+|...|++++|+++|+++++............ .+..+
T Consensus 113 ~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 113 QELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred CHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 999999999999988655 788899999999999999999999999888655422211111 12222
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcC
Q 038852 292 FNQGKDKEAMQSYKSLMERNFRM-TPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHG 370 (851)
Q Consensus 292 ~~~g~~~~A~~l~~~~~~~~~~~-~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g 370 (851)
...|++++|+++|+++++.+... +..++..++.+|...|++++|+.+|+++++.. |+ +..++..++.+|...|
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~----~~~~~~~l~~~~~~~g 265 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PN----DYLLWNKLGATLANGN 265 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----CHHHHHHHHHHHHHTT
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cC----CHHHHHHHHHHHHHcC
Confidence 36666666666666666655432 45566666666666666666666666666542 22 4556666666666666
Q ss_pred ChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----------CHHHHHHHHHHH
Q 038852 371 KFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSP----------DVTTFRTLIDAY 440 (851)
Q Consensus 371 ~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p----------d~~~~~~Ll~~~ 440 (851)
++++|+.+|+++....+. +..+|..++.+|.+.|++++|+..|+++++..... ...+|..++.+|
T Consensus 266 ~~~~A~~~~~~al~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 340 (368)
T 1fch_A 266 QSEEAVAAYRRALELQPG-----YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLAL 340 (368)
T ss_dssp CHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHH
Confidence 666666666666554333 45566666666666666666666666655431110 145566666666
Q ss_pred HHcCCHHHHHHHHHH
Q 038852 441 LKVERIDDALELFNR 455 (851)
Q Consensus 441 ~~~g~~~~A~~~~~~ 455 (851)
...|++++|..++++
T Consensus 341 ~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 341 SMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHTCGGGHHHHHTT
T ss_pred HHhCChHhHHHhHHH
Confidence 666666666665553
No 21
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.87 E-value=1.4e-19 Score=206.06 Aligned_cols=390 Identities=9% Similarity=0.010 Sum_probs=262.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-------CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC----
Q 038852 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQ-------ADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAP---- 206 (851)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~-------~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~---- 206 (851)
....||.|+.++...|++++|++.|+++++. .......++|+.++.+|...|++++|+..|+++++...
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567899999999999999999999988652 11223467899999999999999999999998876421
Q ss_pred -CC-CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhcCCcc
Q 038852 207 -VG-PSSNTYRHLTKGFVDA--GRIGEAVDLLRDMLSRQLGADSLVYNNLISGFL---NLGNLEKANELFDELKQRCLVY 279 (851)
Q Consensus 207 -~~-p~~~~~~~Li~~~~~~--g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~---~~g~~~~A~~~~~~~~~~~~~~ 279 (851)
.. -...++..++.++... +++++|+++|+++++.... +...+..++.++. ..++.++|++.|+++++.+..
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~- 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD- 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-
Confidence 11 1356777777777665 4689999999999988765 6777777666644 457778899999998887665
Q ss_pred chhhHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccC
Q 038852 280 DGVVNATFMEWWFN----QGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVN 355 (851)
Q Consensus 280 d~~~~~~li~~~~~----~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~ 355 (851)
+..++..+...+.. .|++++|+++|++++..+. .+..++..++.+|...|++++|++.|+++++.. |+ +
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~----~ 280 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PN----N 280 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TT----C
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CC----h
Confidence 55666666555544 4677889999999888765 456778889999999999999999999998853 43 6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038852 356 SDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRT 435 (851)
Q Consensus 356 ~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~ 435 (851)
..++..++.+|...+....+... ..+.......+.+++|...|+++.+... .+..++..
T Consensus 281 ~~~~~~lg~~y~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~ 339 (472)
T 4g1t_A 281 AYLHCQIGCCYRAKVFQVMNLRE--------------------NGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSI 339 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--------------------------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHH--------------------HHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhh
Confidence 78888888877543222111110 0111111223346788888888876532 24567888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCccchh--HHHHHHH-HHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 038852 436 LIDAYLKVERIDDALELFNRMVESGLRVVVS--FGTKVFN-ELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCN 512 (851)
Q Consensus 436 Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~L~~-~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~ 512 (851)
++.+|...|++++|+++|+++++....+... ++..+.. .+...|++++|+..|++.++... +......
T Consensus 340 lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~--~~~~~~~------- 410 (472)
T 4g1t_A 340 LASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ--KSREKEK------- 410 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC--CCHHHHH-------
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--ccHHHHH-------
Confidence 9999999999999999999999876554322 2222332 34568999999999999988643 3222222
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCC
Q 038852 513 EGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRWGYAAPV 569 (851)
Q Consensus 513 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~~~~~p 569 (851)
..+.+.+++++.++.+ +.+...+..++.+|...|++++|++.|++..+..+..|
T Consensus 411 --~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p 464 (472)
T 4g1t_A 411 --MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP 464 (472)
T ss_dssp --HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-----------------
T ss_pred --HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 2234556666666654 34567888899999999999999999999887655444
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=6.7e-21 Score=209.18 Aligned_cols=260 Identities=12% Similarity=0.028 Sum_probs=161.8
Q ss_pred HHHcCChHHHHH-HHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 038852 185 YCDEGKVDEGMN-VFRRIIETAPVGP--SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGN 261 (851)
Q Consensus 185 ~~~~g~~~~A~~-l~~~~~~~~~~~p--~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~ 261 (851)
+...|++++|++ .|+++++..+..+ +...+..++..+...|++++|+.+|+++++.... +..+|..++.+|.+.|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcC
Confidence 445588999998 8887776554433 3456888999999999999999999999988655 78889999999999999
Q ss_pred HHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHH----------------HHHHH
Q 038852 262 LEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCN----------------TLLEV 325 (851)
Q Consensus 262 ~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~----------------~Li~~ 325 (851)
+++|+++|+++++.+.. +..++..++.+|...|++++|+++|+++++....... .+. .+...
T Consensus 114 ~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH-LVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGG-GCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH-HHHHHHHHhhhhcccHHHHHHHHH
Confidence 99999999999887655 6778888889999999999999999998876543221 111 12222
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHH
Q 038852 326 LLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARY 405 (851)
Q Consensus 326 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~ 405 (851)
+ ..|++++|+.+|+++++...... +..++..++.+|...|++++|+.+|+++....+. +..+|..++.+|
T Consensus 192 ~-~~~~~~~A~~~~~~a~~~~p~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~l~~~~ 261 (368)
T 1fch_A 192 L-SDSLFLEVKELFLAAVRLDPTSI----DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-----DYLLWNKLGATL 261 (368)
T ss_dssp H-HHHHHHHHHHHHHHHHHHSTTSC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHH
T ss_pred h-hcccHHHHHHHHHHHHHhCcCcc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-----CHHHHHHHHHHH
Confidence 2 55555555555555555322110 2445555555555555555555555555443332 444555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 406 CENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVE 458 (851)
Q Consensus 406 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~ 458 (851)
...|++++|+.+|+++++.. ..+..++..++.+|.+.|++++|+.+|+++++
T Consensus 262 ~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 262 ANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555555555555555431 12344555555555555555555555555554
No 23
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.86 E-value=2.1e-19 Score=204.63 Aligned_cols=382 Identities=12% Similarity=-0.002 Sum_probs=266.8
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC-----CCC
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFS--------RIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQA-----DIV 172 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~-----~~~ 172 (851)
.+..+...+...|++++|++.|++++.. .......+|+.+..+|...|++++|+..|+++++.. ...
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 3556788899999999999999998753 122346789999999999999999999999986531 111
Q ss_pred -CCHHHHHHHHHHHHHc--CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhcCCCCCH
Q 038852 173 -PNIVSYNNLINTYCDE--GKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFV---DAGRIGEAVDLLRDMLSRQLGADS 246 (851)
Q Consensus 173 -pd~~~~~~Li~~~~~~--g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~---~~g~~~~A~~l~~~m~~~g~~pd~ 246 (851)
....++..++.++... +++++|++.|+++++.+|. +...+..++.++. ..++.++|++.|+++++.... +.
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~--~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~ 209 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK--NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQ 209 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CH
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-ch
Confidence 2356777777777665 4699999999999999877 6667777766644 467788999999999998665 77
Q ss_pred HHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 038852 247 LVYNNLISGFLNL----GNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTL 322 (851)
Q Consensus 247 ~~~~~Li~~~~~~----g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~L 322 (851)
.++..++..+... |++++|+++|+++...... +..++..++.+|...|++++|++.|+++++..+. +..++..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHH
Confidence 7787777666554 5788999999999987765 7788899999999999999999999999988753 55677777
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHH
Q 038852 323 LEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNII 402 (851)
Q Consensus 323 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li 402 (851)
+.+|...+... ... ....+.......+.+++|+..|+++....+. +..++..++
T Consensus 288 g~~y~~~~~~~---------~~~------------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~lg 341 (472)
T 4g1t_A 288 GCCYRAKVFQV---------MNL------------RENGMYGKRKLLELIGHAVAHLKKADEANDN-----LFRVCSILA 341 (472)
T ss_dssp HHHHHHHHHHH---------HHC------------------CHHHHHHHHHHHHHHHHHHHHHCTT-----TCCCHHHHH
T ss_pred HHHHHHHHHHh---------hhH------------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-----hhhhhhhHH
Confidence 77764321111 110 0111111222334467889999988766554 556788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcC
Q 038852 403 ARYCENEMLEEAEKLLREISTKSLSPDV--TTFRTLIDA-YLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKG 479 (851)
Q Consensus 403 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~~~~~Ll~~-~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g 479 (851)
.+|...|++++|++.|+++++....+.. ..+..++.. +...|++++|+..|+++++........ .+
T Consensus 342 ~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~-----------~~ 410 (472)
T 4g1t_A 342 SLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK-----------EK 410 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH-----------HH
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH-----------HH
Confidence 9999999999999999999876433221 123344433 356799999999999999876432111 11
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038852 480 KVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYG 530 (851)
Q Consensus 480 ~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g 530 (851)
..+.+.+++++.++.+.. +..+|..+..+|...|++++|++.|+++++.+
T Consensus 411 ~~~~l~~~~~~~l~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 411 MKDKLQKIAKMRLSKNGA-DSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 223445566666665433 66789999999999999999999999999765
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=5.7e-18 Score=196.27 Aligned_cols=406 Identities=11% Similarity=0.057 Sum_probs=301.9
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTY 185 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~ 185 (851)
.+..++. +.+.|++++|+.+|++++... +.+...|..++..+.+.|++++|+++|++++... |++..|..++...
T Consensus 15 ~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~---p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 15 AWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV---LHIDLWKCYLSYV 89 (530)
T ss_dssp HHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC---CCHHHHHHHHHHH
T ss_pred HHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CChHHHHHHHHHH
Confidence 3445565 578899999999999998653 5578899999999999999999999999997643 6888888887533
Q ss_pred -HHcCChHHHHH----HHHHHHHhCCCC-CCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 038852 186 -CDEGKVDEGMN----VFRRIIETAPVG-PSSNTYRHLTKGFVD---------AGRIGEAVDLLRDMLSRQLGADSLVYN 250 (851)
Q Consensus 186 -~~~g~~~~A~~----l~~~~~~~~~~~-p~~~~~~~Li~~~~~---------~g~~~~A~~l~~~m~~~g~~pd~~~~~ 250 (851)
...|++++|.+ +|+++++..+.. .+...|..++....+ .|++++|..+|+++++.........|.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 45677777665 888887764443 356788888887665 789999999999999842221124444
Q ss_pred HHHHHH-------------HhcCCHHHHHHHHHHHH------hcC---Cccc--------hhhHHHHHHHHHHc----CC
Q 038852 251 NLISGF-------------LNLGNLEKANELFDELK------QRC---LVYD--------GVVNATFMEWWFNQ----GK 296 (851)
Q Consensus 251 ~Li~~~-------------~~~g~~~~A~~~~~~~~------~~~---~~~d--------~~~~~~li~~~~~~----g~ 296 (851)
...... .+.+++++|+.+++++. +.. +.++ ...|...+...... ++
T Consensus 170 ~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~ 249 (530)
T 2ooe_A 170 DYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTED 249 (530)
T ss_dssp HHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSC
T ss_pred HHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCc
Confidence 333321 13456778887777632 221 1222 24555555433332 23
Q ss_pred H----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-------CCCHH-------HHHHHHHHHHHcCCCCCCCccCHHH
Q 038852 297 D----KEAMQSYKSLMERNFRMTPATCNTLLEVLLK-------HEKKE-------EAQALFEQMLDNHQPPNIQAVNSDT 358 (851)
Q Consensus 297 ~----~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~-------~g~~~-------~A~~l~~~m~~~~~~p~~~~~~~~~ 358 (851)
. ++++.+|++++...+ .+...|..++..+.. .|+++ +|+++|+++++. +.|+ +..+
T Consensus 250 ~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~----~~~l 323 (530)
T 2ooe_A 250 QTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKK----NMLL 323 (530)
T ss_dssp SHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSS----CHHH
T ss_pred chhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcc----cHHH
Confidence 2 478889999998754 467889888888876 78877 999999999862 2343 7889
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038852 359 FNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDV-AGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLI 437 (851)
Q Consensus 359 ~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll 437 (851)
|..++..+.+.|++++|+.+|+++....+. +. ..|..++..+.+.|++++|+++|++.++... .+...|...+
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a 397 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAIEDI-----DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAA 397 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCcccc-----CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHH
Confidence 999999999999999999999999876543 43 5899999999999999999999999997532 2333343333
Q ss_pred HH-HHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC-CC--CHHHHHHHHHHHHhc
Q 038852 438 DA-YLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDP-KP--DFLIYDVVVRGLCNE 513 (851)
Q Consensus 438 ~~-~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~-~p--d~~~~~~ll~a~~~~ 513 (851)
.. +...|++++|+++|+++++.... +..++..++..+.+.|+.++|..+|++++.... .| ....|..++......
T Consensus 398 ~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~ 476 (530)
T 2ooe_A 398 LMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 476 (530)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHS
T ss_pred HHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence 22 44689999999999999987643 345556688888999999999999999998643 22 355888888888899
Q ss_pred CChHHHHHHHHHHHHc
Q 038852 514 GLFDMSKDIVDQMMKY 529 (851)
Q Consensus 514 g~~~~A~~~~~~m~~~ 529 (851)
|+.+.+..++.++++.
T Consensus 477 G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 477 GDLASILKVEKRRFTA 492 (530)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999999864
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.86 E-value=2.1e-20 Score=205.43 Aligned_cols=234 Identities=13% Similarity=0.042 Sum_probs=144.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 174 d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
+...|..++..+.+.|++++|+++|+++++.++. +..+|..++.+|...|++++|+++|+++++.... +..+|..++
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG--DAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHH
Confidence 3456888899999999999999999999988766 7889999999999999999999999999988655 788899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCccchhhH----------HHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-CHHHHHHH
Q 038852 254 SGFLNLGNLEKANELFDELKQRCLVYDGVVN----------ATFMEWWFNQGKDKEAMQSYKSLMERNFRM-TPATCNTL 322 (851)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~----------~~li~~~~~~g~~~~A~~l~~~~~~~~~~~-~~~~~~~L 322 (851)
.+|...|++++|+++|+++++.... +...+ ..++.+|.+.|++++|+++|+++++.+... +..+|..+
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHH-HHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCcc-chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999998876433 11222 223444445555555555555555443321 34444445
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHH
Q 038852 323 LEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNII 402 (851)
Q Consensus 323 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li 402 (851)
+.+|...|++++|+++|+++++.. |+ +..++..++.+|...|++++|+.+|+++....+. +..+|..++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~ 288 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR--PE----DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-----FIRSRYNLG 288 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----chHHHHHHH
Confidence 555555555555555555544432 11 3444444444444445555554444444433222 344444444
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 038852 403 ARYCENEMLEEAEKLLREIS 422 (851)
Q Consensus 403 ~~~~~~g~~~~A~~l~~~m~ 422 (851)
.+|...|++++|+..|++++
T Consensus 289 ~~~~~~g~~~~A~~~~~~al 308 (365)
T 4eqf_A 289 ISCINLGAYREAVSNFLTAL 308 (365)
T ss_dssp HHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 44444444444444444443
No 26
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=1.7e-17 Score=199.03 Aligned_cols=385 Identities=11% Similarity=0.102 Sum_probs=294.5
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRI--RPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLIN 183 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~ 183 (851)
.....+++|+.+|++.+|++++++++...- ..+....+.|+.+..+. +..+..++.++.- ......++.
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd--------~~d~~eIA~ 1057 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD--------NYDAPDIAN 1057 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh--------hccHHHHHH
Confidence 445678899999999999999999984431 24567788888777776 5566666666541 112455888
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 038852 184 TYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLE 263 (851)
Q Consensus 184 ~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~ 263 (851)
.+...|.+++|..+|++.. . .....+.++ ...+++++|.++++++. +..+|..++.++...|+++
T Consensus 1058 Iai~lglyEEAf~IYkKa~----~--~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFD----V--NTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcC----C--HHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHH
Confidence 8999999999999999972 1 222333333 37889999999998662 6789999999999999999
Q ss_pred HHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 038852 264 KANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQML 343 (851)
Q Consensus 264 ~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~ 343 (851)
+|++.|.+. -|...|..++.+|.+.|++++|+++|..+++....+. ..+.++.+|++.+++++...+ +
T Consensus 1123 EAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~--Idt~LafaYAKl~rleele~f----I 1190 (1630)
T 1xi4_A 1123 EAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFALAKTNRLAELEEF----I 1190 (1630)
T ss_pred HHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc--ccHHHHHHHHhhcCHHHHHHH----H
Confidence 999999775 2777888899999999999999999999887763332 334599999999998864433 2
Q ss_pred HcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038852 344 DNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREIST 423 (851)
Q Consensus 344 ~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 423 (851)
. .+ +...|..++..|...|++++|..+|.++ ..|..++.+|++.|++++|++.+++..
T Consensus 1191 ~---~~-----n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------------~ny~rLA~tLvkLge~q~AIEaarKA~- 1248 (1630)
T 1xi4_A 1191 N---GP-----NNAHIQQVGDRCYDEKMYDAAKLLYNNV-------------SNFGRLASTLVHLGEYQAAVDGARKAN- 1248 (1630)
T ss_pred h---CC-----CHHHHHHHHHHHHhcCCHHHHHHHHHhh-------------hHHHHHHHHHHHhCCHHHHHHHHHHhC-
Confidence 2 12 4567778999999999999999999986 249999999999999999999999873
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 038852 424 KSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIY 503 (851)
Q Consensus 424 ~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~ 503 (851)
+..+|..+..+|...|+++.|..+...+. .....+..++..|.+.|.+++|+.+++..+... .-....|
T Consensus 1249 -----n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmf 1317 (1630)
T 1xi4_A 1249 -----STRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMF 1317 (1630)
T ss_pred -----CHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHH
Confidence 67899999999999999999998776432 234445568899999999999999999988664 3344566
Q ss_pred HHHHHHHHh--cCChHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 504 DVVVRGLCN--EGLFDMSKDIVDQMMKYG----VGITPALQDFVRETFGKAGRGEEIERVLN 559 (851)
Q Consensus 504 ~~ll~a~~~--~g~~~~A~~~~~~m~~~g----~~~~~~~~~~L~~~~~~~G~~~eA~~ll~ 559 (851)
+.|..+|.+ -++..+++++|..-+... .-.....|..++.+|.+.|+++.|...+-
T Consensus 1318 tELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~ 1379 (1630)
T 1xi4_A 1318 TELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 1379 (1630)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 666666655 456666666666443210 01245567779999999999999985443
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.84 E-value=4.5e-19 Score=190.68 Aligned_cols=275 Identities=12% Similarity=0.045 Sum_probs=128.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038852 142 CNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGF 221 (851)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~ 221 (851)
+..++..+...|++++|+.+|+++++... .+..+|..++.+|...|++++|++.|+++++.++. +..+|..++.+|
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~ 99 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAP--EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK--DIAVHAALAVSH 99 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC--CHHHHHHHHHHH
Confidence 34444445555555555555555544322 23444555555555555555555555555554433 444455555555
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHH-HH-HHHHcCCHHH
Q 038852 222 VDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATF-ME-WWFNQGKDKE 299 (851)
Q Consensus 222 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l-i~-~~~~~g~~~~ 299 (851)
...|++++|++.|+++++.... +...+..++..+ ++......+ .. ++...|++++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHH
Confidence 5555555555555555544322 111111110000 000000011 11 2444455555
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHH
Q 038852 300 AMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETF 379 (851)
Q Consensus 300 A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~ 379 (851)
|+++|+++++.+.. +..++..++.+|...|++++|+++|+++++.. |+ +..++..++.+|...|++++|+.+|
T Consensus 157 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~----~~~~~~~l~~~~~~~~~~~~A~~~~ 229 (327)
T 3cv0_A 157 CRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PD----DAQLWNKLGATLANGNRPQEALDAY 229 (327)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CC----cHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555554332 34455555555556666666666666555532 21 4455555555555555555555555
Q ss_pred HHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHHcCCHHH
Q 038852 380 KKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSP-----------DVTTFRTLIDAYLKVERIDD 448 (851)
Q Consensus 380 ~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----------d~~~~~~Ll~~~~~~g~~~~ 448 (851)
+++....+. +..+|..++.+|...|++++|++.|+++++..... +..+|..++.+|.+.|++++
T Consensus 230 ~~a~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 304 (327)
T 3cv0_A 230 NRALDINPG-----YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304 (327)
T ss_dssp HHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCC-----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence 555443322 44455555555555555555555555554431110 23445555555555555555
Q ss_pred HHHHHHH
Q 038852 449 ALELFNR 455 (851)
Q Consensus 449 A~~~~~~ 455 (851)
|..++++
T Consensus 305 A~~~~~~ 311 (327)
T 3cv0_A 305 VELTYAQ 311 (327)
T ss_dssp HHHHTTC
T ss_pred HHHHHHH
Confidence 5555543
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=2.2e-20 Score=203.34 Aligned_cols=380 Identities=12% Similarity=0.115 Sum_probs=185.8
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 038852 116 RAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGM 195 (851)
Q Consensus 116 ~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~ 195 (851)
+.|++++|.+.++++- +..+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 5678999999999872 2359999999999999999999999764 47778999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038852 196 NVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 196 ~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~ 275 (851)
.+++.+++. .++..+.+.|+.+|.+.|+++++.++++ .|+..+|..++..|...|++++|..+|..+
T Consensus 82 ~yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 82 KYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 988887763 2356788999999999999999998885 257779999999999999999999999976
Q ss_pred CCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccC
Q 038852 276 CLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVN 355 (851)
Q Consensus 276 ~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~ 355 (851)
..|..++.++.+.|++++|++.++++ .++.+|..++.+|+..|+++.|..+...+. . +
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~-------~ 206 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---V-------H 206 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---T-------C
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---h-------C
Confidence 47899999999999999999999998 256899999999999999999976655422 1 4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCC-----
Q 038852 356 SDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCEN--EMLEEAEKLLREISTKSLSP----- 428 (851)
Q Consensus 356 ~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~--g~~~~A~~l~~~m~~~g~~p----- 428 (851)
+.-...++..|.+.|.+++|+.+|+......+. ....|+.|..+|++- +++.+.+++|..-+ ++.+
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~a-----h~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~ 279 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLERA-----HMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAA 279 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTC-----CHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHH
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHH-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHH
Confidence 555667999999999999999999999876544 677888888888764 45556666554321 1221
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------ccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 038852 429 -DVTTFRTLIDAYLKVERIDDALELFNRMVESGL-----------RVVVSFGTKVFNELITKGKVAECAPILTKMGEKDP 496 (851)
Q Consensus 429 -d~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~-----------~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~ 496 (851)
+...|..+...|...++++.|...+-+-..... ..+..+|...+..|. +...+++.-+...+...+
T Consensus 280 ~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~l 357 (449)
T 1b89_A 280 EQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRL 357 (449)
T ss_dssp HTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhcc
Confidence 345688999999999999998874332211100 012233333444444 111122222222221111
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 038852 497 KPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNA 560 (851)
Q Consensus 497 ~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~ 560 (851)
| .+..+..+.+.|.+..+..++..+.+. ....+-..+-++|...++++.-+.-++.
T Consensus 358 --d---~~r~v~~~~~~~~l~l~~~yl~~v~~~---n~~~vnealn~l~ieeed~~~lr~si~~ 413 (449)
T 1b89_A 358 --D---HTRAVNYFSKVKQLPLVKPYLRSVQNH---NNKSVNESLNNLFITEEDYQALRTSIDA 413 (449)
T ss_dssp --C---HHHHHHHHHHTTCTTTTHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --C---cHHHHHHHHHcCCcHHHHHHHHHHHHh---hHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 2 233455566777777777777666654 3566666788888888888776666654
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=2.6e-19 Score=196.62 Aligned_cols=271 Identities=12% Similarity=0.099 Sum_probs=205.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038852 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHL 217 (851)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~L 217 (851)
+...|..++..+.+.|++++|+++|+++++... .+..+|..++.+|...|++++|+++|+++++.++. +..+|..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP--GDAEAWQFLGITQAENENEQAAIVALQRCLELQPN--NLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--CHHHHHHH
Confidence 344577788888888999999999998877643 46778888899999999999999999998888765 77888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcc-chhhHHHH
Q 038852 218 TKGFVDAGRIGEAVDLLRDMLSRQLG---------ADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVY-DGVVNATF 287 (851)
Q Consensus 218 i~~~~~~g~~~~A~~l~~~m~~~g~~---------pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~-d~~~~~~l 287 (851)
+.+|...|++++|+++|+++++.... ....++..++.+|.+.|++++|+++|+++++..... +..++..+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 99999999999999999988875322 012334456888999999999999999999876542 57788999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHH
Q 038852 288 MEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECF 367 (851)
Q Consensus 288 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~ 367 (851)
+.+|...|++++|+++|+++++... .+..+|+.++.+|...|++++|+.+|+++++.. |+ +..++..++.+|.
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~----~~~~~~~l~~~~~ 292 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ--PG----FIRSRYNLGISCI 292 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----CHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC----chHHHHHHHHHHH
Confidence 9999999999999999999998864 356889999999999999999999999999853 33 6889999999999
Q ss_pred HcCChHHHHHHHHHhccCCCCCCC-------ccCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 368 KHGKFSEAIETFKKAGTHPKSKPF-------AMDVAGYNNIIARYCENEMLEEAEKLLR 419 (851)
Q Consensus 368 ~~g~~~~A~~~~~~~~~~~~~~~~-------~~d~~~~~~li~~~~~~g~~~~A~~l~~ 419 (851)
+.|++++|+.+|+++....+.... ..+..+|..+..++...|+.+.+.++++
T Consensus 293 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 293 NLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999998654322110 0023455566666666666665555544
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=2.2e-18 Score=185.31 Aligned_cols=268 Identities=12% Similarity=0.022 Sum_probs=174.9
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT 184 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~ 184 (851)
..+..++..+...|++++|+.+|++++... ..+..+|..++.++...|++++|++.|+++++... .+..+|..++.+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~ 98 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP--KDIAVHAALAVS 98 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc--CCHHHHHHHHHH
Confidence 568899999999999999999999999875 44788999999999999999999999999988643 467889999999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 038852 185 YCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHL--------------TK-GFVDAGRIGEAVDLLRDMLSRQLGADSLVY 249 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~L--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~ 249 (851)
|...|++++|++.|+++++..+. +...+..+ .. ++...|++++|+++|+++++.... +..++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 175 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ--YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLH 175 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT--TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc--cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHH
Confidence 99999999999999999988765 33334333 21 244445555555555555554333 44455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Q 038852 250 NNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKH 329 (851)
Q Consensus 250 ~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~ 329 (851)
..++.+|.+.|++++|+++|+++++.... +..+|..++.++...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~------------------------------------~~~~~~~l~~~~~~~ 219 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRPD------------------------------------DAQLWNKLGATLANG 219 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------------------------------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCC------------------------------------cHHHHHHHHHHHHHc
Confidence 55555555555555555555554443322 334555555566666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCc-------cCHHHHHHHH
Q 038852 330 EKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFA-------MDVAGYNNII 402 (851)
Q Consensus 330 g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~d~~~~~~li 402 (851)
|++++|+++|+++++.. |+ +..++..++.+|...|++++|+++|+++....+..... .+..+|..++
T Consensus 220 ~~~~~A~~~~~~a~~~~--~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~ 293 (327)
T 3cv0_A 220 NRPQEALDAYNRALDIN--PG----YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFR 293 (327)
T ss_dssp TCHHHHHHHHHHHHHHC--TT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC--CC----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHH
Confidence 66666666666655532 21 45556666666666666666666666554332221000 0245566677
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 038852 403 ARYCENEMLEEAEKLLRE 420 (851)
Q Consensus 403 ~~~~~~g~~~~A~~l~~~ 420 (851)
.++.+.|++++|..++++
T Consensus 294 ~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 294 MLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHTTCHHHHHHHTTC
T ss_pred HHHHhcCCHHHHHHHHHH
Confidence 777777777777766654
No 31
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=2.8e-16 Score=188.72 Aligned_cols=387 Identities=13% Similarity=0.163 Sum_probs=234.4
Q ss_pred CCCCCCCccccccccCCCHHHHHHHHHHhhccccCCCCCccCCCCCCCCCCCCCCCCCCCCccccccCCCccHH-HHHHH
Q 038852 35 SPNPNLNPISARGYAFSSAEEAAAERRRRKRRLRIEPPLHAIRPNPTQPPPRDPNAPRLPDTTSALVGPRLNLH-NRVQS 113 (851)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~-~ll~~ 113 (851)
+-+|--.+..++.|.+.+.+..++..+.+-. +.++. +. ...++- .+++.
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKiv---l~~s~-------------------fs--------~n~~LqnlLi~t 1031 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIV---LDNSV-------------------FS--------EHRNLQNLLILT 1031 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHH---cCCCc-------------------cc--------ccHHHHHHHHHH
Confidence 3344344556799999999999998875443 11100 00 011111 13444
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHH
Q 038852 114 LIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDE 193 (851)
Q Consensus 114 l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~ 193 (851)
.++. +..+..++..+.- ......++..+...|.+++|..+|++.- -.....+.++ ...+++++
T Consensus 1032 AIka-D~~Rv~eyI~kLd-------~~d~~eIA~Iai~lglyEEAf~IYkKa~------~~~~A~~VLi---e~i~nldr 1094 (1630)
T 1xi4_A 1032 AIKA-DRTRVMEYINRLD-------NYDAPDIANIAISNELFEEAFAIFRKFD------VNTSAVQVLI---EHIGNLDR 1094 (1630)
T ss_pred HHHh-ChhhHHHHHHHhh-------hccHHHHHHHHHhCCCHHHHHHHHHHcC------CHHHHHHHHH---HHHhhHHH
Confidence 4444 4444444444322 1113446666677777777777777651 1122222222 25677777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038852 194 GMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELK 273 (851)
Q Consensus 194 A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~ 273 (851)
|.++++++. +..+|..++.++...|++++|++.|.++ -|...|..++.+|.+.|++++|.++|...+
T Consensus 1095 AiE~Aervn-------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mAr 1161 (1630)
T 1xi4_A 1095 AYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR 1161 (1630)
T ss_pred HHHHHHhcC-------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777651 3457777777777777777777777554 266677777777777777777777777766
Q ss_pred hcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCc
Q 038852 274 QRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQA 353 (851)
Q Consensus 274 ~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~ 353 (851)
+... +..+...++.+|++.+++++..++. + .++...|..++..|...|++++|..+|..+
T Consensus 1162 k~~~--e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------- 1221 (1630)
T 1xi4_A 1162 KKAR--ESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------- 1221 (1630)
T ss_pred hhcc--cccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----------
Confidence 5542 3333334777777777776433332 1 123345556777777777777777777764
Q ss_pred cCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038852 354 VNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTF 433 (851)
Q Consensus 354 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~ 433 (851)
..|..++.+|++.|++++|++.++++. +..+|..+..+|...|+++.|......+ ..+...+
T Consensus 1222 ---~ny~rLA~tLvkLge~q~AIEaarKA~----------n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deL 1283 (1630)
T 1xi4_A 1222 ---SNFGRLASTLVHLGEYQAAVDGARKAN----------STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADEL 1283 (1630)
T ss_pred ---hHHHHHHHHHHHhCCHHHHHHHHHHhC----------CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHH
Confidence 267777777777777777777777762 5667777777777777777777665532 2245556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHc--CCHHHHHHHHHHHhhCC----CCCCHHHHHHHH
Q 038852 434 RTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITK--GKVAECAPILTKMGEKD----PKPDFLIYDVVV 507 (851)
Q Consensus 434 ~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~--g~~~~A~~ll~~m~~~~----~~pd~~~~~~ll 507 (851)
..++..|.+.|.+++|+.+|+..+..+ +-...+++.+...|.+. ++..+++++|..-.+.. ..-+...|..++
T Consensus 1284 eeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv 1362 (1630)
T 1xi4_A 1284 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 1362 (1630)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHH
Confidence 677777777777777777777776655 33444555555555543 44555555555433210 011445677777
Q ss_pred HHHHhcCChHHHH
Q 038852 508 RGLCNEGLFDMSK 520 (851)
Q Consensus 508 ~a~~~~g~~~~A~ 520 (851)
-.|.+.|+++.|.
T Consensus 1363 ~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1363 FLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHhcccHHHHH
Confidence 7777777777776
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=2.2e-17 Score=175.40 Aligned_cols=260 Identities=12% Similarity=0.093 Sum_probs=196.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 038852 110 RVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEG 189 (851)
Q Consensus 110 ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g 189 (851)
-|+.++..|++..|+..++++..............++.+|...|++++|+..++.. ..++..++..++..|...|
T Consensus 5 ~~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 5 DVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcCCC
Confidence 36778888999999988877543221111335566788899999999999876542 2356778888888888899
Q ss_pred ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038852 190 KVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELF 269 (851)
Q Consensus 190 ~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~ 269 (851)
+.++|++.|++++......-+...+..++.+|...|++++|+++|++ ..+..++..++.+|.+.|++++|++.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999887531122677788888999999999999999987 247788889999999999999999999
Q ss_pred HHHHhcCCccchh--hHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 038852 270 DELKQRCLVYDGV--VNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQ 347 (851)
Q Consensus 270 ~~~~~~~~~~d~~--~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~ 347 (851)
+++++.+.. +.. ....++..+...|++++|+++|+++++..+ .+..+|+.++.++.+.|++++|++.|+++++..
T Consensus 154 ~~~~~~~p~-~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~- 230 (291)
T 3mkr_A 154 KKMQDQDED-ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD- 230 (291)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHhhCcC-cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 999887533 111 112233444455888999999998888754 477788888888889999999999999888753
Q ss_pred CCCCCccCHHHHHHHHHHHHHcCChHH-HHHHHHHhccCCCC
Q 038852 348 PPNIQAVNSDTFNIMVNECFKHGKFSE-AIETFKKAGTHPKS 388 (851)
Q Consensus 348 ~p~~~~~~~~~~~~L~~~~~~~g~~~~-A~~~~~~~~~~~~~ 388 (851)
|+ +..++..++.++...|+.++ +.++++++....+.
T Consensus 231 -p~----~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 231 -SG----HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp -TT----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred -CC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 43 78888888888888888875 56788887766555
No 33
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.79 E-value=5e-18 Score=192.27 Aligned_cols=347 Identities=11% Similarity=0.051 Sum_probs=167.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh---hHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 038852 109 NRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRY---DDAVALFKYFFDQADIVPNIVSYNNLINTY 185 (851)
Q Consensus 109 ~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~ 185 (851)
.+...+.+.|++++|+.+|+++...+ +...+..|..+|...|+. ++|+++|+++.+. +...+..|..++
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC---------------------------------CHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHH
Confidence 45666677777777777777776654 233444555556666666 6777777766532 444455566545
Q ss_pred HHcC-----ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038852 186 CDEG-----KVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRI---GEAVDLLRDMLSRQLGADSLVYNNLISGFL 257 (851)
Q Consensus 186 ~~~g-----~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~---~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~ 257 (851)
...+ ++++|+++|+++.+.+. ..++..|+.+|...+.. .++++.+.+..+.| +...+..|+..|.
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~----~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~ 152 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANGE----GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYR 152 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTTC----SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHH
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 4444 56677777777766542 22566666666655433 23444444444443 2345555666666
Q ss_pred hcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC----C
Q 038852 258 NLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQG---KDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKH----E 330 (851)
Q Consensus 258 ~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g---~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~----g 330 (851)
..+.++++....+.+.+.....+...+..|..+|.+.| ++++|++.|++..+.+.. +...+..|..+|... +
T Consensus 153 ~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp HHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSC
T ss_pred cCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCC
Confidence 66644444333322222212223335556666666666 666666666666665532 223334455555433 4
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHH-H--HHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHh
Q 038852 331 KKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNE-C--FKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCE 407 (851)
Q Consensus 331 ~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~ 407 (851)
++++|+++|+++. .+ +...+..|+.+ | ...+++++|+++|+++.+.. +...+..|..+|.
T Consensus 232 d~~~A~~~~~~aa-~g--------~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g-------~~~A~~~Lg~~y~- 294 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PG--------YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD-------QPRAELLLGKLYY- 294 (452)
T ss_dssp CHHHHHHHHHHHG-GG--------STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHc-CC--------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHH-
Confidence 5666666666654 21 34455555555 2 34556666666666654321 4555555555554
Q ss_pred cC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHH-
Q 038852 408 NE-----MLEEAEKLLREISTKSLSPDVTTFRTLIDAYLK----VERIDDALELFNRMVESGLRVVVSFGTKVFNELIT- 477 (851)
Q Consensus 408 ~g-----~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~- 477 (851)
.| ++++|+++|++.. . -+...+..|+.+|.. ..++++|+++|+++.+.|. ......|..+|..
T Consensus 295 ~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G 367 (452)
T 3e4b_A 295 EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQG 367 (452)
T ss_dssp HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSC
T ss_pred cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhC
Confidence 33 5666666665554 2 244555555555544 2355666666666555442 1111224444432
Q ss_pred ---cCCHHHHHHHHHHHhhCC
Q 038852 478 ---KGKVAECAPILTKMGEKD 495 (851)
Q Consensus 478 ---~g~~~~A~~ll~~m~~~~ 495 (851)
..+.++|..+|++..+.|
T Consensus 368 ~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 368 KGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp TTBCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHCC
Confidence 235555555555555443
No 34
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.78 E-value=8.6e-18 Score=190.34 Aligned_cols=380 Identities=11% Similarity=0.011 Sum_probs=262.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038852 144 AIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKV---DEGMNVFRRIIETAPVGPSSNTYRHLTKG 220 (851)
Q Consensus 144 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~---~~A~~l~~~~~~~~~~~p~~~~~~~Li~~ 220 (851)
.+...+.+.|++++|+++|+++.+.. +...+..|..+|...|+. ++|+++|+++.+. +...+..|+.+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~ 78 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC---------------------------------CHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHH
Confidence 36677788999999999999997752 444567788888888888 9999999999754 45577888886
Q ss_pred HHHcC-----CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcC
Q 038852 221 FVDAG-----RIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQG 295 (851)
Q Consensus 221 ~~~~g-----~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g 295 (851)
+...+ ++++|+++|+++.+.|.. ..+..|+.+|...+..+++.+.++.+......-+......|..+|...+
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQG 155 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHT
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC
Confidence 66655 789999999999997644 3677888888887765544444443333221224667888888899988
Q ss_pred CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHc---
Q 038852 296 KDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHE---KKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKH--- 369 (851)
Q Consensus 296 ~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g---~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~--- 369 (851)
.++++++..+.+.+.-...+...+..|..+|...| +.++|++.|+++.+.+.. +...+..|+.+|...
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~------~a~~~~~Lg~~y~~g~~~ 229 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV------TAQRVDSVARVLGDATLG 229 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS------CHHHHHHHHHHHTCGGGS
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH------HHHHHHHHHHHHhCCCCC
Confidence 66655555444443333333358888999999999 999999999999997654 566668889888665
Q ss_pred -CChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-
Q 038852 370 -GKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIAR-Y--CENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVE- 444 (851)
Q Consensus 370 -g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g- 444 (851)
+++++|+++|+++. .. +...+..|..+ | ...+++++|+++|++..+.| +...+..|+.+|. .|
T Consensus 230 ~~d~~~A~~~~~~aa---~g-----~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~ 297 (452)
T 3e4b_A 230 TPDEKTAQALLEKIA---PG-----YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGK 297 (452)
T ss_dssp SCCHHHHHHHHHHHG---GG-----STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCS
T ss_pred CCCHHHHHHHHHHHc---CC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCC
Confidence 79999999999986 22 67778888887 4 46899999999999999875 7888888998887 55
Q ss_pred ----CHHHHHHHHHHHHHcCCccchhHHHHHHHHHHH----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----
Q 038852 445 ----RIDDALELFNRMVESGLRVVVSFGTKVFNELIT----KGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCN---- 512 (851)
Q Consensus 445 ----~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~----~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~---- 512 (851)
++++|+++|+++. .| +......|..+|.. ..++++|+++|++..+.|. ......|...|..
T Consensus 298 g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~ 370 (452)
T 3e4b_A 298 WVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGT 370 (452)
T ss_dssp SSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTB
T ss_pred CCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCC
Confidence 9999999999998 44 33334447777766 3499999999999998763 3455556666654
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHhhhh
Q 038852 513 EGLFDMSKDIVDQMMKYGVGITPALQDFVRETF--GKAGRGEEIERVLNADRW 563 (851)
Q Consensus 513 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~--~~~G~~~eA~~ll~~~~~ 563 (851)
..+.++|..+|+...+.|. ......+..+. ...++.++|.+++++.+.
T Consensus 371 ~~d~~~A~~~~~~A~~~g~---~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 371 KPDPLNAYVFSQLAKAQDT---PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp CCCHHHHHHHHHHHHTTCC---HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4689999999999998874 23333333332 234567788888887654
No 35
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=4.6e-18 Score=185.20 Aligned_cols=271 Identities=13% Similarity=0.090 Sum_probs=140.1
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT 184 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~ 184 (851)
..+..++.++++.|++++|++.|.++ .|...|..++.++...|++++|+++++.+++. .++..+.+.|+.+
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~---~~~~~i~~~Li~~ 103 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFA 103 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CccchhHHHHHHH
Confidence 46778999999999999999999763 46778999999999999999999988877553 3457789999999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 038852 185 YCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEK 264 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~ 264 (851)
|.+.|+++++.++++ .|+..+|..++..|...|++++|..+|..+ ..|..|+.++.+.|++++
T Consensus 104 Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~ 166 (449)
T 1b89_A 104 LAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQA 166 (449)
T ss_dssp -----CHHHHTTTTT--------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHH
T ss_pred HHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHH
Confidence 999999999998885 246679999999999999999999999977 368999999999999999
Q ss_pred HHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 038852 265 ANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLD 344 (851)
Q Consensus 265 A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~ 344 (851)
|++.++++ .+..+|..++.+|+..|+++.|..+...+ ...+.-...++..|.+.|++++|+.+|+..+.
T Consensus 167 AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 167 AVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp HHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 99999998 27889999999999999999997766542 23334455799999999999999999999986
Q ss_pred cCCCCCCCccCHHHHHHHHHHHHHc--CChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038852 345 NHQPPNIQAVNSDTFNIMVNECFKH--GKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLL 418 (851)
Q Consensus 345 ~~~~p~~~~~~~~~~~~L~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~ 418 (851)
.. +. ....|+.|+.+|++- +++.+.++.|......++.-...-+...|..++..|...++++.|...+
T Consensus 236 le--~a----h~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 236 LE--RA----HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp ST--TC----CHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred Cc--HH----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 54 22 678899998888765 4566666666543322220000015667999999999999999988754
No 36
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.76 E-value=5.4e-15 Score=173.22 Aligned_cols=431 Identities=8% Similarity=0.002 Sum_probs=306.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC---hHHHHHHHH
Q 038852 123 ASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGK---VDEGMNVFR 199 (851)
Q Consensus 123 A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~---~~~A~~l~~ 199 (851)
.+..|++.+..+ +.|...|..++..+.+.++++.|..+|++++.... .....|...+..-.+.|+ ++.+.++|+
T Consensus 51 ~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP--~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 51 VIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFP--LMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 445567767666 46899999999999889999999999999988643 466778888888888888 999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHh-cCC-CC-CHHHHHHHHHHHHh---------c
Q 038852 200 RIIETAPVGPSSNTYRHLTKGFVDAGRI--------GEAVDLLRDMLS-RQL-GA-DSLVYNNLISGFLN---------L 259 (851)
Q Consensus 200 ~~~~~~~~~p~~~~~~~Li~~~~~~g~~--------~~A~~l~~~m~~-~g~-~p-d~~~~~~Li~~~~~---------~ 259 (851)
+++...+..+++..|...+....+.++. +...++|+.++. .|. .+ +...|...+..... .
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 9987654347888898888777665543 334577777665 344 33 45678777766542 3
Q ss_pred CCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHH-------------cCCHHHHHHHHHHHHHh--cCC-----------
Q 038852 260 GNLEKANELFDELKQRCLVYDGVVNATFMEWWFN-------------QGKDKEAMQSYKSLMER--NFR----------- 313 (851)
Q Consensus 260 g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~-------------~g~~~~A~~l~~~~~~~--~~~----------- 313 (851)
++++.+..+|++++..-...-..+|......-.. ..+++.|...+.++... ++.
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~ 287 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT 287 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch
Confidence 4577888999998864222122333322221111 12344455555543321 110
Q ss_pred ----C-----C---HHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHH
Q 038852 314 ----M-----T---PATCNTLLEVLLKHE-------KKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSE 374 (851)
Q Consensus 314 ----~-----~---~~~~~~Li~~~~~~g-------~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~ 374 (851)
| + ...|...+..-...+ ..+.+..+|++++..... +..+|...+..+...|+.++
T Consensus 288 ~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~------~~~lW~~ya~~~~~~~~~~~ 361 (679)
T 4e6h_A 288 ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF------APEIWFNMANYQGEKNTDST 361 (679)
T ss_dssp TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT------CHHHHHHHHHHHHHHSCCTT
T ss_pred hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC------CHHHHHHHHHHHHhcCcHHH
Confidence 0 0 245665555433332 134567789999885333 78999999999999999999
Q ss_pred HH-HHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---------CC------------CHHH
Q 038852 375 AI-ETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSL---------SP------------DVTT 432 (851)
Q Consensus 375 A~-~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------~p------------d~~~ 432 (851)
|+ ++|+++....+. +...|..++......|++++|.++|+++++... .| ...+
T Consensus 362 a~r~il~rAi~~~P~-----s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~v 436 (679)
T 4e6h_A 362 VITKYLKLGQQCIPN-----SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYV 436 (679)
T ss_dssp HHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHH
Confidence 97 999999765444 677788899999999999999999999886310 12 1347
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccchhHHHHHHHHHHHc-CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 038852 433 FRTLIDAYLKVERIDDALELFNRMVES-GLRVVVSFGTKVFNELITK-GKVAECAPILTKMGEKDPKPDFLIYDVVVRGL 510 (851)
Q Consensus 433 ~~~Ll~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~L~~~~~~~-g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~ 510 (851)
|...+....+.|+++.|..+|+++++. ... ...+|...+..-.+. ++.+.|.++|++.++. ..-+...|..++...
T Consensus 437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe 514 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-TPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFL 514 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence 888888888999999999999999986 221 222332233333344 4599999999999887 333677778888888
Q ss_pred HhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCCC
Q 038852 511 CNEGLFDMSKDIVDQMMKYGVG--ITPALQDFVRETFGKAGRGEEIERVLNADRWGYAAPV 569 (851)
Q Consensus 511 ~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~~~~~~p 569 (851)
...|+.+.|..+|++++..... ....++..+++.-.+.|+.+.+.++.+++...+|+.+
T Consensus 515 ~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 515 IYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 8899999999999999986542 2456788889999999999999999999999998765
No 37
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=1.1e-16 Score=169.97 Aligned_cols=252 Identities=13% Similarity=0.098 Sum_probs=172.6
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 038852 147 AAMYRAKRYDDAVALFKYFFDQADIVPN--IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDA 224 (851)
Q Consensus 147 ~~~~~~g~~~~A~~l~~~~~~~~~~~pd--~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~ 224 (851)
+-.+..|++..|+..++++.. ..|+ ......++++|...|++++|+..++.. ..++..++..++..+...
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcCC
Confidence 345567888888888876522 2233 234566778888888888888766541 334667778888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHH
Q 038852 225 GRIGEAVDLLRDMLSRQLGA-DSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQS 303 (851)
Q Consensus 225 g~~~~A~~l~~~m~~~g~~p-d~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l 303 (851)
++.++|++.|++++..+..| +...+..++.+|...|++++|+++|++ ..+..++..++.+|.+.|++++|++.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88888888888888765333 566777788888888888888888876 23566777777778888888888888
Q ss_pred HHHHHHhcCCCCHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 038852 304 YKSLMERNFRMTPAT--CNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKK 381 (851)
Q Consensus 304 ~~~~~~~~~~~~~~~--~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 381 (851)
|+++++.+... ... ...++..+...|++++|+.+|+++++. .|+ +..+++.++.+|.+.|++++|++.|++
T Consensus 153 l~~~~~~~p~~-~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~----~~~~~~~la~~~~~~g~~~eA~~~l~~ 225 (291)
T 3mkr_A 153 LKKMQDQDEDA-TLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSP----TLLLLNGQAACHMAQGRWEAAEGVLQE 225 (291)
T ss_dssp HHHHHHHCTTC-HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCC----CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhCcCc-HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCC----cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88877765321 111 112223334457777777777777775 232 667777777777777777777777777
Q ss_pred hccCCCCCCCccCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhC
Q 038852 382 AGTHPKSKPFAMDVAGYNNIIARYCENEMLEE-AEKLLREISTK 424 (851)
Q Consensus 382 ~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~ 424 (851)
+....+. +..++..++.++...|+.++ +.++++++++.
T Consensus 226 al~~~p~-----~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 226 ALDKDSG-----HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHCTT-----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHhCCC-----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 7665554 66667777777777777654 45666666654
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.4e-16 Score=164.69 Aligned_cols=227 Identities=15% Similarity=0.193 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-CC----HHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVG-PS----SNT 213 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~-p~----~~~ 213 (851)
...|..++..+...|++++|+++|+++++.. .+..+|..++.+|...|++++|++.|+++++..+.. ++ ..+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 3466777777888888888888888887764 466777888888888888888888888877754321 11 467
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHH
Q 038852 214 YRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFN 293 (851)
Q Consensus 214 ~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~ 293 (851)
|..++.+|...|++++|+++|+++++... + ...+.+.|++++|++.++++...... +..++..++.++..
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~-------~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHR--T-------ADILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC--C-------HHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCc--h-------hHHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHH
Confidence 77888888888888888888888887532 3 23455667788888888887776544 56677777777888
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChH
Q 038852 294 QGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFS 373 (851)
Q Consensus 294 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~ 373 (851)
.|++++|++.|+++++.+.. +..+|..++.+|...|++++|+.+|+++++.. |+ +..++..++.+|.+.|+++
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~----~~~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PN----FVRAYIRKATAQIAVKEYA 224 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----CHHHHHHHHHHHHHTTCHH
T ss_pred hcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--HH----HHHHHHHHHHHHHHHhhHH
Confidence 88888888888887776543 55677778888888888888888888887753 32 5777888888888888888
Q ss_pred HHHHHHHHhccC
Q 038852 374 EAIETFKKAGTH 385 (851)
Q Consensus 374 ~A~~~~~~~~~~ 385 (851)
+|++.|+++...
T Consensus 225 ~A~~~~~~a~~~ 236 (258)
T 3uq3_A 225 SALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888777543
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.7e-16 Score=162.55 Aligned_cols=225 Identities=16% Similarity=0.210 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--C----HHHH
Q 038852 176 VSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGA--D----SLVY 249 (851)
Q Consensus 176 ~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p--d----~~~~ 249 (851)
..|..++..+...|++++|+++|+++++.+ .+..+|..++.+|...|++++|+++|+++++..... + ..+|
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 345555555555555555555555555544 244455555555555555555555555554432110 1 2344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Q 038852 250 NNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKH 329 (851)
Q Consensus 250 ~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~ 329 (851)
..++.+|...|++++|++.|++ +++.... ...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~-----------------------------------a~~~~~~---------~~~~~~~ 118 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQK-----------------------------------SLTEHRT---------ADILTKL 118 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------------------------------HHHHCCC---------HHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHH-----------------------------------HHhcCch---------hHHHHHH
Confidence 4444444444444444444444 4443221 1223344
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcC
Q 038852 330 EKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENE 409 (851)
Q Consensus 330 g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g 409 (851)
|++++|+..+++++... |+ +..++..++.+|...|++++|+++|+++....+. +..+|..++.+|...|
T Consensus 119 ~~~~~a~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~l~~~~~~~~ 187 (258)
T 3uq3_A 119 RNAEKELKKAEAEAYVN--PE----KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-----DARGYSNRAAALAKLM 187 (258)
T ss_dssp HHHHHHHHHHHHHHHCC--HH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHcC--cc----hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-----cHHHHHHHHHHHHHhC
Confidence 55555666555555532 11 3445556666666666666666666665544333 4555666666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 038852 410 MLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVES 459 (851)
Q Consensus 410 ~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~ 459 (851)
++++|+..|+++++.. ..+..+|..++.+|.+.|++++|+++|+++++.
T Consensus 188 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 188 SFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 6666666666665542 224556666666666666666666666666553
No 40
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.74 E-value=3.6e-16 Score=171.93 Aligned_cols=249 Identities=13% Similarity=0.063 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGK-VDEGMNVFRRIIETAPVGPSSNTYRHL 217 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~-~~~A~~l~~~~~~~~~~~p~~~~~~~L 217 (851)
..+|+.+..++.+.|++++|+++|+++++... .+..+|+.++.+|...|+ +++|+..|+++++.++. +..+|+.+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P--~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~--~~~a~~~~ 172 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA--ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK--NYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc--cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC--CHHHHHHH
Confidence 45677788888888999999999999887643 357788888888999996 99999999999988877 78889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHH-cCC
Q 038852 218 TKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFN-QGK 296 (851)
Q Consensus 218 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~-~g~ 296 (851)
+.++...|++++|+..|+++++.... +..+|..++.++.+.|++++|+..|+++++.+.. +...|+.++.+|.+ .|.
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999988776 8888999999999999999999999999888776 77888888888888 555
Q ss_pred HHHH-----HHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHc
Q 038852 297 DKEA-----MQSYKSLMERNFRMTPATCNTLLEVLLKHE--KKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKH 369 (851)
Q Consensus 297 ~~~A-----~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g--~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~ 369 (851)
.++| ++.|+++++.++. +...|+.+..+|...| ++++|++.+.++ + ..|+ +..++..++.+|.+.
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~----~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHS----SPYLIAFLVDIYEDM 322 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCC----CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCC----CHHHHHHHHHHHHHH
Confidence 4666 5788888887653 5567888888888877 588888888877 3 3443 677888888888886
Q ss_pred C---------ChHHHHHHHHHh-ccCCCCCCCccCHHHHHHHHHHHH
Q 038852 370 G---------KFSEAIETFKKA-GTHPKSKPFAMDVAGYNNIIARYC 406 (851)
Q Consensus 370 g---------~~~~A~~~~~~~-~~~~~~~~~~~d~~~~~~li~~~~ 406 (851)
| .+++|+++|+++ .+..+. ....|..++..+.
T Consensus 323 ~~~~~~~~~~~~~~A~~~~~~l~~~~DP~-----r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 323 LENQCDNKEDILNKALELCEILAKEKDTI-----RKEYWRYIGRSLQ 364 (382)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHTTCGG-----GHHHHHHHHHHHH
T ss_pred hcccccchHHHHHHHHHHHHHHHHHhCch-----hHHHHHHHHHHHH
Confidence 4 258888888888 555443 4555666655543
No 41
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.74 E-value=3.9e-16 Score=171.68 Aligned_cols=248 Identities=11% Similarity=0.088 Sum_probs=206.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGR-IGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
..+|+.+..++...|++++|++.|+++++.++. +..+|+.++.++...|+ +++|++.|+++++.... +..+|..++
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~--~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA--NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc--CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 567888999999999999999999999999877 88899999999999997 99999999999999877 889999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-CCCH
Q 038852 254 SGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLK-HEKK 332 (851)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~-~g~~ 332 (851)
.+|...|++++|+..|+++++.+.. +..+|..+..++.+.|++++|++.|+++++.++. +...|+.++.+|.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999998877 7889999999999999999999999999998764 56788889999988 5654
Q ss_pred HHH-----HHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcC--ChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHH
Q 038852 333 EEA-----QALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHG--KFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARY 405 (851)
Q Consensus 333 ~~A-----~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~ 405 (851)
++| ++.|++++.. .|+ +..+|+.++.+|...| ++++|++.+.++ ...+. +...+..++.+|
T Consensus 252 ~eA~~~~el~~~~~Al~l--~P~----~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~-----~~~al~~La~~~ 319 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKL--VPH----NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHS-----SPYLIAFLVDIY 319 (382)
T ss_dssp SHHHHHHHHHHHHHHHHH--STT----CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCC-----CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH--CCC----CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCC-----CHHHHHHHHHHH
Confidence 777 5888888884 344 7888888888888877 688888888887 43333 677788888888
Q ss_pred HhcC---------CHHHHHHHHHHH-HhCCCCCC-HHHHHHHHHHHH
Q 038852 406 CENE---------MLEEAEKLLREI-STKSLSPD-VTTFRTLIDAYL 441 (851)
Q Consensus 406 ~~~g---------~~~~A~~l~~~m-~~~g~~pd-~~~~~~Ll~~~~ 441 (851)
.+.| .+++|+++|+++ .+. .|+ ...|..++..+.
T Consensus 320 ~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 320 EDMLENQCDNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence 8764 257888888887 543 333 455665555543
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.74 E-value=1.8e-16 Score=160.53 Aligned_cols=208 Identities=19% Similarity=0.188 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038852 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHL 217 (851)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~L 217 (851)
+...+..+...+.+.|++++|+..|+++++..+ .+...|..++.++...|++++|+..|+++++.+|. +..+|..+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~l 79 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENP--QDPEALYWLARTQLKLGLVNPALENGKTLVARTPR--YLGGYMVL 79 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHH
Confidence 334444555555555555555555555544321 23444555555555555555555555555555444 44455555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCH
Q 038852 218 TKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKD 297 (851)
Q Consensus 218 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~ 297 (851)
+.+|...+. .. .+ .+...|++++|+..|+++++.+.. +..++..+..+|...|++
T Consensus 80 g~~~~~~~~------------~~---~~---------~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~ 134 (217)
T 2pl2_A 80 SEAYVALYR------------QA---ED---------RERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGER 134 (217)
T ss_dssp HHHHHHHHH------------TC---SS---------HHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhh------------hh---hh---------hcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCh
Confidence 555554400 00 00 000004444444444444443332 333444444444444444
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHH
Q 038852 298 KEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIE 377 (851)
Q Consensus 298 ~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~ 377 (851)
++|++.|+++++.+ .+...+..++.+|...|++++|+..|+++++.. |+ +..++..++.++...|++++|++
T Consensus 135 ~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--P~----~~~~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 135 DKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA--PK----DLDLRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TT----CHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC----ChHHHHHHHHHHHHccCHHHHHH
Confidence 44444444444443 334444445555555555555555555555432 22 44455555555555555555555
Q ss_pred HHHHh
Q 038852 378 TFKKA 382 (851)
Q Consensus 378 ~~~~~ 382 (851)
.|+++
T Consensus 207 ~~~~~ 211 (217)
T 2pl2_A 207 AAALE 211 (217)
T ss_dssp -----
T ss_pred HHHHH
Confidence 55443
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.73 E-value=4.8e-16 Score=157.47 Aligned_cols=195 Identities=15% Similarity=0.121 Sum_probs=154.3
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT 184 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~ 184 (851)
..+..+...+.+.|++++|+..|++++... +.+...+..+..++.+.|++++|+..|+++++..+ .+...|..++.+
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~ 82 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP--RYLGGYMVLSEA 82 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHH
Confidence 457788999999999999999999998665 44788999999999999999999999999988653 467889999999
Q ss_pred HHHc-----------CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 185 YCDE-----------GKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 185 ~~~~-----------g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
|... |++++|+..|+++++.+|. +..+|..++.+|...|++++|++.|+++++.. .+...+..++
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPR--YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 9999 9999999999999888776 77888888889999999999999999988887 4788888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 038852 254 SGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSL 307 (851)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~ 307 (851)
.+|...|++++|+..|+++++.... +..++..++.++.+.|++++|++.|++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8888888888888888888877654 5566666666666677777776666654
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.72 E-value=1.2e-15 Score=159.39 Aligned_cols=248 Identities=12% Similarity=0.103 Sum_probs=188.6
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC--CHHHHHHHHH
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVP--NIVSYNNLIN 183 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~p--d~~~~~~Li~ 183 (851)
.+...+..+...|++++|+.+|++++.... .+..++..++.+|...|++++|++.|+++++. +..+ ...+|..++.
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSADFEYYGK 82 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHHHHHHHH
Confidence 466778888999999999999999887653 34557888888889999999999999998773 2222 2446888899
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 038852 184 TYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLE 263 (851)
Q Consensus 184 ~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~ 263 (851)
+|...|++++|++.|+++++.++. +..+|..++.+|...|++++|++.|+++++.... +..+|..++..+...++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTT--RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT--CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988766 6678899999999999999999999998887554 7788888884444556999
Q ss_pred HHHHHHHHHHhcCCccchhhHHHHHHHHHHcCC---HHHHHHHHHHHHHhc---CCC----CHHHHHHHHHHHHhCCCHH
Q 038852 264 KANELFDELKQRCLVYDGVVNATFMEWWFNQGK---DKEAMQSYKSLMERN---FRM----TPATCNTLLEVLLKHEKKE 333 (851)
Q Consensus 264 ~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~---~~~A~~l~~~~~~~~---~~~----~~~~~~~Li~~~~~~g~~~ 333 (851)
+|++.|+++++.... +...+..++.++...|+ +++|+..|+++++.. ... ...+|..++.+|...|+++
T Consensus 160 ~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 999999998887655 56677777788888887 777888888877653 111 1246677788888888888
Q ss_pred HHHHHHHHHHHcCCCCCCCccCHHHHHHHHHH
Q 038852 334 EAQALFEQMLDNHQPPNIQAVNSDTFNIMVNE 365 (851)
Q Consensus 334 ~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~ 365 (851)
+|+++|+++++.. |+ +..++..+...
T Consensus 239 ~A~~~~~~al~~~--p~----~~~a~~~l~~~ 264 (272)
T 3u4t_A 239 KADAAWKNILALD--PT----NKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHHHHHHC--TT----CHHHHHHHC--
T ss_pred HHHHHHHHHHhcC--cc----HHHHHHHhhhh
Confidence 8888888887743 33 55555554443
No 45
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.72 E-value=1.6e-16 Score=176.18 Aligned_cols=285 Identities=12% Similarity=0.053 Sum_probs=161.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---CC-CCH
Q 038852 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN--IVSYNNLINTYCDEGKVDEGMNVFRRIIETAP---VG-PSS 211 (851)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd--~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~---~~-p~~ 211 (851)
....+..++..+...|++++|+.+|+++++.....+. ..+|..++.+|...|++++|+..|+++++... .. ...
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 4445556666666677777777777766654321111 24566666677777777777777766554311 10 023
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCC--------------------HHHHH
Q 038852 212 NTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG-AD----SLVYNNLISGFLNLGN--------------------LEKAN 266 (851)
Q Consensus 212 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~~~~~Li~~~~~~g~--------------------~~~A~ 266 (851)
.++..++.+|...|++++|++.|+++++.... .+ ..++..++.+|...|+ +++|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 45666677777777777777777766653110 01 3366667777777777 77777
Q ss_pred HHHHHHHhcC-----CccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHhCCCHHHHH
Q 038852 267 ELFDELKQRC-----LVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRM-----TPATCNTLLEVLLKHEKKEEAQ 336 (851)
Q Consensus 267 ~~~~~~~~~~-----~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~-----~~~~~~~Li~~~~~~g~~~~A~ 336 (851)
++|+++++.. ......++..++.+|...|++++|+++|+++++..... ...++..++.+|...|++++|+
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 7776655421 11123456666677777777777777777766542111 1236667777788888888888
Q ss_pred HHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCC-CccCHHHHHHHHHHHHhcCCHHHHH
Q 038852 337 ALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKP-FAMDVAGYNNIIARYCENEMLEEAE 415 (851)
Q Consensus 337 ~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~d~~~~~~li~~~~~~g~~~~A~ 415 (851)
.+|+++++.............++..++.+|...|++++|+++|+++.......+ ......++..++.+|...|++++|+
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 888777653111000000144566677777777777777777766543211111 0001334445555555555555555
Q ss_pred HHHHHHH
Q 038852 416 KLLREIS 422 (851)
Q Consensus 416 ~l~~~m~ 422 (851)
..|++.+
T Consensus 328 ~~~~~al 334 (406)
T 3sf4_A 328 HFAEKHL 334 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 46
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.72 E-value=1.6e-16 Score=176.24 Aligned_cols=286 Identities=15% Similarity=0.132 Sum_probs=205.0
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC---CC
Q 038852 173 PNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS--SNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQ--LG---AD 245 (851)
Q Consensus 173 pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~--~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g--~~---pd 245 (851)
.....+..++..+...|++++|+.+|+++++..+..+. ..+|..++.+|...|++++|+++|+++++.. .. ..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 45677888899999999999999999999998655222 3578899999999999999999999886541 11 12
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc-----cchhhHHHHHHHHHHcCC--------------------HHHH
Q 038852 246 SLVYNNLISGFLNLGNLEKANELFDELKQRCLV-----YDGVVNATFMEWWFNQGK--------------------DKEA 300 (851)
Q Consensus 246 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~-----~d~~~~~~li~~~~~~g~--------------------~~~A 300 (851)
..++..++.+|...|++++|+..|+++++.... ....++..++.+|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 467888999999999999999999988764221 124578888889999999 9999
Q ss_pred HHHHHHHHHhcC-----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHH
Q 038852 301 MQSYKSLMERNF-----RMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEA 375 (851)
Q Consensus 301 ~~l~~~~~~~~~-----~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A 375 (851)
+++|+++++... .....++..++.+|...|++++|+++|+++++.............++..++.+|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 999988765411 112346778888899999999999999888763211110000234778888888888888888
Q ss_pred HHHHHHhccCCCCCCC-ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCCHHHH
Q 038852 376 IETFKKAGTHPKSKPF-AMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLS-PD----VTTFRTLIDAYLKVERIDDA 449 (851)
Q Consensus 376 ~~~~~~~~~~~~~~~~-~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~~~~~Ll~~~~~~g~~~~A 449 (851)
+.+|+++.......+. .....++..++.+|...|++++|+..|+++++.... .+ ..++..++.+|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8888877543221110 001456677777777888888888877776542110 11 44666777777777777777
Q ss_pred HHHHHHHHH
Q 038852 450 LELFNRMVE 458 (851)
Q Consensus 450 ~~~~~~m~~ 458 (851)
+++|+++++
T Consensus 327 ~~~~~~al~ 335 (406)
T 3sf4_A 327 MHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777665
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.72 E-value=2.1e-15 Score=157.56 Aligned_cols=232 Identities=11% Similarity=0.102 Sum_probs=134.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Q 038852 250 NNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERN--FRMTPATCNTLLEVLL 327 (851)
Q Consensus 250 ~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~--~~~~~~~~~~Li~~~~ 327 (851)
..++..+...|++++|+.+|+++++.... +..++..++.+|...|++++|++.|+++++.. ......+|..++.+|.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 33444444444444444444444443332 33344444444445555555555555444421 1112234666777777
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHh
Q 038852 328 KHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCE 407 (851)
Q Consensus 328 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~ 407 (851)
..|++++|++.|+++++.... +..++..++.+|...|++++|+++|+++....+. +...|..++..+..
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDTT------RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-----DPKVFYELGQAYYY 154 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT------CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-----CHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-----cHHHHHHHHHHHHH
Confidence 777777777777777764322 5567777777777777777777777777665443 56666666633334
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCc-cc------hhHHHHHHHHHHH
Q 038852 408 NEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVER---IDDALELFNRMVESGLR-VV------VSFGTKVFNELIT 477 (851)
Q Consensus 408 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~---~~~A~~~~~~m~~~~~~-~~------~~~~~~L~~~~~~ 477 (851)
.+++++|++.|+++++.. ..+...+..++.++...|+ +++|+..|+++++.... ++ ...+..+..+|..
T Consensus 155 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 457777777777777642 2245666677777777776 66777777777654211 11 1334445566666
Q ss_pred cCCHHHHHHHHHHHhhC
Q 038852 478 KGKVAECAPILTKMGEK 494 (851)
Q Consensus 478 ~g~~~~A~~ll~~m~~~ 494 (851)
.|++++|++.|+++++.
T Consensus 234 ~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 234 NRDKVKADAAWKNILAL 250 (272)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 66666666666666654
No 48
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.71 E-value=2.3e-16 Score=175.89 Aligned_cols=283 Identities=14% Similarity=0.086 Sum_probs=150.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---C-CCCCHHHHHHH
Q 038852 144 AIIAAMYRAKRYDDAVALFKYFFDQADIVPN--IVSYNNLINTYCDEGKVDEGMNVFRRIIETA---P-VGPSSNTYRHL 217 (851)
Q Consensus 144 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd--~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~---~-~~p~~~~~~~L 217 (851)
.+...+...|++++|+++|+++++.....++ ..+|..++.+|...|++++|++.|+++++.. + ......++..+
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 3444555556666666666655554221111 1345555555566666666666665554431 0 00123455556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHhc
Q 038852 218 TKGFVDAGRIGEAVDLLRDMLSRQ-----LGADSLVYNNLISGFLNLGN-----------------LEKANELFDELKQR 275 (851)
Q Consensus 218 i~~~~~~g~~~~A~~l~~~m~~~g-----~~pd~~~~~~Li~~~~~~g~-----------------~~~A~~~~~~~~~~ 275 (851)
+.+|...|++++|+++|+++++.. ......++..++.+|...|+ +++|+++|++.++.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 666666666666666666555431 00123455666666666666 66666666655432
Q ss_pred C-----CccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-C----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038852 276 C-----LVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRM-T----PATCNTLLEVLLKHEKKEEAQALFEQMLDN 345 (851)
Q Consensus 276 ~-----~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~-~----~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 345 (851)
. ......++..++.+|...|++++|+++|+++++..... + ..++..++.+|...|++++|+++|++++..
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 1 11123455566666667777777777766665432110 1 135667777788888888888888777653
Q ss_pred CCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038852 346 HQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKS 425 (851)
Q Consensus 346 ~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 425 (851)
............++..++.+|...|++++|+.+|+++...... .++
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------------------~~~--------------- 338 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE-------------------LGD--------------- 338 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------------------HTC---------------
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-------------------CCC---------------
Confidence 2110000001345566666666666666666666655321000 000
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 038852 426 LSPDVTTFRTLIDAYLKVERIDDALELFNRMVESG 460 (851)
Q Consensus 426 ~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~ 460 (851)
......++..++.+|...|++++|+++|+++++..
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 00013355666677777777777777777776653
No 49
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.70 E-value=3e-16 Score=174.96 Aligned_cols=280 Identities=13% Similarity=0.111 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C---CCCHHH
Q 038852 176 VSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS--SNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQ--L---GADSLV 248 (851)
Q Consensus 176 ~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~--~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g--~---~pd~~~ 248 (851)
..+..++..+...|++++|+.+|+++++..+..+. ..+|..++.+|...|++++|+++|+++++.. . .....+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 44566788899999999999999999998755221 1578899999999999999999999987641 1 113467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CccchhhHHHHHHHHHHcCC-----------------HHHHHHHHHH
Q 038852 249 YNNLISGFLNLGNLEKANELFDELKQRC-----LVYDGVVNATFMEWWFNQGK-----------------DKEAMQSYKS 306 (851)
Q Consensus 249 ~~~Li~~~~~~g~~~~A~~~~~~~~~~~-----~~~d~~~~~~li~~~~~~g~-----------------~~~A~~l~~~ 306 (851)
+..++.+|...|++++|+++|+++++.. ......++..++.+|...|+ +++|+++|++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 8889999999999999999999887642 12235577778888888888 7888877777
Q ss_pred HHHhcC-----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 038852 307 LMERNF-----RMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKK 381 (851)
Q Consensus 307 ~~~~~~-----~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 381 (851)
+++... .....++..++.+|...|++++|+++|+++++...... +..
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~------------------------ 260 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG----DRA------------------------ 260 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT----CHH------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC----CcH------------------------
Confidence 654311 11123566677777777777777777777665211000 000
Q ss_pred hccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038852 382 AGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSL--S---PDVTTFRTLIDAYLKVERIDDALELFNRM 456 (851)
Q Consensus 382 ~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~---pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m 456 (851)
....++..++.+|...|++++|+.+|+++++... . ....++..++.+|...|++++|+++|+++
T Consensus 261 -----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (411)
T 4a1s_A 261 -----------AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH 329 (411)
T ss_dssp -----------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 0122344444445555555555555444432110 0 11456677888888888888888888887
Q ss_pred HHcCC-----ccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 038852 457 VESGL-----RVVVSFGTKVFNELITKGKVAECAPILTKMGEK 494 (851)
Q Consensus 457 ~~~~~-----~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~ 494 (851)
++... ......+..+..+|...|++++|+++|+++++.
T Consensus 330 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 330 LAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 76421 112345566889999999999999999999876
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.70 E-value=1.4e-14 Score=151.93 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHH
Q 038852 141 TCNAIIAAMYRAKRYDDAVALFKYF 165 (851)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~l~~~~ 165 (851)
++..+...|...|++++|+++|+++
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a 32 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKA 32 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3333333444444444444444443
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.70 E-value=2.1e-14 Score=150.56 Aligned_cols=225 Identities=14% Similarity=0.101 Sum_probs=130.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCHHHH
Q 038852 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVD----AGRIGEAVDLLRDMLSRQLGADSLVY 249 (851)
Q Consensus 174 d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~~~ 249 (851)
+..++..++..|...|++++|++.|+++++.+ +..++..|+.+|.. .+++++|+++|+++.+.+ +..++
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 34455555555555555555555555555421 34455555555555 555555555555555543 44445
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 038852 250 NNLISGFLN----LGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEV 325 (851)
Q Consensus 250 ~~Li~~~~~----~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~ 325 (851)
..++.+|.. .+++++|+++|+++.+ .+ +...+..+..+
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-----------------------------------~~---~~~a~~~lg~~ 119 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACD-----------------------------------LK---YAEGCASLGGI 119 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHH-----------------------------------TT---CHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHH-----------------------------------cC---CccHHHHHHHH
Confidence 555555555 4555555555544444 32 33455556666
Q ss_pred HHh----CCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHH----cCChHHHHHHHHHhccCCCCCCCccCHHH
Q 038852 326 LLK----HEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFK----HGKFSEAIETFKKAGTHPKSKPFAMDVAG 397 (851)
Q Consensus 326 ~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~d~~~ 397 (851)
|.. .+++++|+++|+++++.+ +..++..++.+|.. .+++++|+++|+++.+.. +...
T Consensus 120 ~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~~~a 184 (273)
T 1ouv_A 120 YHDGKVVTRDFKKAVEYFTKACDLN--------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK-------DSPG 184 (273)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHH
T ss_pred HHcCCCcccCHHHHHHHHHHHHhcC--------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------CHHH
Confidence 665 666666666666666532 34556666666666 666666666666665431 4555
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCC
Q 038852 398 YNNIIARYCE----NEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLK----VERIDDALELFNRMVESGL 461 (851)
Q Consensus 398 ~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~----~g~~~~A~~~~~~m~~~~~ 461 (851)
+..+..+|.. .+++++|++.|++..+.+ +...+..|+.+|.+ .+++++|+++|+++.+.+.
T Consensus 185 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 185 CFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 6666666666 677777777777766653 35566667777776 7777777777777777653
No 52
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.69 E-value=6.4e-16 Score=165.92 Aligned_cols=290 Identities=15% Similarity=0.077 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---C-CCCHHHH
Q 038852 141 TCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN--IVSYNNLINTYCDEGKVDEGMNVFRRIIETAP---V-GPSSNTY 214 (851)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd--~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~---~-~p~~~~~ 214 (851)
.+......+...|++++|+.+|+++++.....+. ..+|..++.+|...|++++|+++|+++++... . .....++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3444455555666666666666666554221111 24455556666666666666666665543310 0 0013344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCC-------------HHHHHHHHHHHHhcC
Q 038852 215 RHLTKGFVDAGRIGEAVDLLRDMLSRQLG-AD----SLVYNNLISGFLNLGN-------------LEKANELFDELKQRC 276 (851)
Q Consensus 215 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~~~~~Li~~~~~~g~-------------~~~A~~~~~~~~~~~ 276 (851)
..++.+|...|++++|++.|+++++.... .+ ..++..++.+|...|+ .++|.+.
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-------- 158 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA-------- 158 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH--------
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH--------
Confidence 55555555555555555555554442110 01 1234444444444444 0000000
Q ss_pred CccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCC
Q 038852 277 LVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERN-----FRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNI 351 (851)
Q Consensus 277 ~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~-----~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~ 351 (851)
+++|+++|+++++.. ......++..++.++...|++++|+++|+++++.......
T Consensus 159 --------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 218 (338)
T 3ro2_A 159 --------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 218 (338)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred --------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Confidence 444444444433210 0001235666677777777777777777776642111000
Q ss_pred CccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCC-CccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC
Q 038852 352 QAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKP-FAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLS-PD 429 (851)
Q Consensus 352 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd 429 (851)
......++..++.+|...|++++|+++|+++........ ......++..++.+|...|++++|+..++++++.... .+
T Consensus 219 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 298 (338)
T 3ro2_A 219 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 298 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence 000123566667777777777777777766543211100 0001334455555555555655555555554432000 01
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 430 ----VTTFRTLIDAYLKVERIDDALELFNRMVE 458 (851)
Q Consensus 430 ----~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~ 458 (851)
..++..++.+|.+.|++++|.++|+++++
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 299 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 22444455555555555555555555544
No 53
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.69 E-value=1e-15 Score=164.26 Aligned_cols=279 Identities=18% Similarity=0.132 Sum_probs=206.7
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcC---CC-CCCHHH
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRPT----VFTCNAIIAAMYRAKRYDDAVALFKYFFDQA---DI-VPNIVS 177 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~---~~-~pd~~~ 177 (851)
.+......+...|++++|+.+|++++..... + ..++..++..|...|++++|+++|+++++.. +. .....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 4566788999999999999999999987533 3 4678889999999999999999999876531 11 112567
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCC--------------------HHHHHHH
Q 038852 178 YNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS----SNTYRHLTKGFVDAGR--------------------IGEAVDL 233 (851)
Q Consensus 178 ~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~----~~~~~~Li~~~~~~g~--------------------~~~A~~l 233 (851)
+..++.+|...|++++|++.|+++++..+...+ ..++..++.+|...|+ +++|+++
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 889999999999999999999998775432223 3478889999999999 9999999
Q ss_pred HHHHHhcC--CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc-----cchhhHHHHHHHHHHcCCHHHHHHH
Q 038852 234 LRDMLSRQ--LG---ADSLVYNNLISGFLNLGNLEKANELFDELKQRCLV-----YDGVVNATFMEWWFNQGKDKEAMQS 303 (851)
Q Consensus 234 ~~~m~~~g--~~---pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~-----~d~~~~~~li~~~~~~g~~~~A~~l 303 (851)
++++++.. .. ....++..++.+|...|++++|+++|+++++.... ....++..++.+|...|++++|+++
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 98876531 11 12357888899999999999999999988754211 1234777888888899999999999
Q ss_pred HHHHHHhcCCC-----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHH
Q 038852 304 YKSLMERNFRM-----TPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIET 378 (851)
Q Consensus 304 ~~~~~~~~~~~-----~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~ 378 (851)
|+++++..... ...++..++.+|...|++++|+.+|++++..............++..++.+|.+.|++++|+.+
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 98877643211 1356777888888889999888888887653111000000234666777777777777777777
Q ss_pred HHHhccC
Q 038852 379 FKKAGTH 385 (851)
Q Consensus 379 ~~~~~~~ 385 (851)
|+++...
T Consensus 326 ~~~a~~~ 332 (338)
T 3ro2_A 326 AEKHLEI 332 (338)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 7776554
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.69 E-value=2e-15 Score=157.77 Aligned_cols=249 Identities=13% Similarity=0.060 Sum_probs=112.4
Q ss_pred CChhHHHHHHHHHHHcCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 038852 153 KRYDDAVALFKYFFDQADIV--PNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEA 230 (851)
Q Consensus 153 g~~~~A~~l~~~~~~~~~~~--pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A 230 (851)
|++++|++.|+++++..... .+..+|..++.+|...|++++|++.|+++++.++. +..+|..++.+|...|++++|
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD--MPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHTTCHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHccCHHHH
Confidence 44444444444444321111 12334444555555555555555555555554433 444555555555555555555
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 038852 231 VDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMER 310 (851)
Q Consensus 231 ~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~ 310 (851)
+++|+++++.... +..++..++.+|.+.|++++|+++|+++++.... ......++..+...|++++|+.+|++++..
T Consensus 97 ~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN--DPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 5555555554332 3444555555555555555555555555443322 111122222233345555555555444443
Q ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCC
Q 038852 311 NFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKP 390 (851)
Q Consensus 311 ~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 390 (851)
... +...+. ++..+...++.++|++.+++++..... ....+..++..++.+|.+.|++++|+.+|+++....+.
T Consensus 174 ~~~-~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-- 247 (275)
T 1xnf_A 174 SDK-EQWGWN-IVEFYLGNISEQTLMERLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH-- 247 (275)
T ss_dssp SCC-CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT--
T ss_pred CCc-chHHHH-HHHHHHHhcCHHHHHHHHHHHhccccc--ccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch--
Confidence 322 112222 444455555566666666655432110 00001345556666666666666666666666544322
Q ss_pred CccCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038852 391 FAMDVAGYNNIIARYCENEMLEEAEKLL 418 (851)
Q Consensus 391 ~~~d~~~~~~li~~~~~~g~~~~A~~l~ 418 (851)
+ +.....++...|++++|++.+
T Consensus 248 ---~---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 ---N---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---T---CHHHHHHHHHHHHHHHC----
T ss_pred ---h---HHHHHHHHHHHHHHHhhHHHH
Confidence 1 222233444555555555444
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.68 E-value=1.4e-15 Score=159.12 Aligned_cols=247 Identities=14% Similarity=0.036 Sum_probs=197.8
Q ss_pred HcCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChH
Q 038852 116 RAGDLDAASYLARQAVFSRIR---PTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVD 192 (851)
Q Consensus 116 ~~g~~~~A~~l~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~ 192 (851)
..|++++|+..+++++..... .+..+|..++.+|...|++++|+++|+++++... .+..+|..++.+|...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP--DMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHccCHH
Confidence 357899999999999875321 2467889999999999999999999999988643 46889999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038852 193 EGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDEL 272 (851)
Q Consensus 193 ~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~ 272 (851)
+|+++|+++++.++. +..+|..++.+|...|++++|+++|+++++.... +. .+..++..+...|++++|+.+|+++
T Consensus 95 ~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~-~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 95 AAYEAFDSVLELDPT--YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DP-FRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHCTT--CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH-HHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcc--ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-Ch-HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999999998766 6789999999999999999999999999987544 33 3444555667789999999999988
Q ss_pred HhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 038852 273 KQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRM---TPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPP 349 (851)
Q Consensus 273 ~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~---~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p 349 (851)
...... +... ..++..+...++.++|++.++++++..... +..+|..++.+|...|++++|+.+|++++... |
T Consensus 171 ~~~~~~-~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p 246 (275)
T 1xnf_A 171 FEKSDK-EQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--V 246 (275)
T ss_dssp HHHSCC-CSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--C
T ss_pred HhcCCc-chHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--c
Confidence 876543 3333 347777888899999999999887654321 24678889999999999999999999999853 3
Q ss_pred CCCccCHHHHHHHHHHHHHcCChHHHHHHH
Q 038852 350 NIQAVNSDTFNIMVNECFKHGKFSEAIETF 379 (851)
Q Consensus 350 ~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~ 379 (851)
+ + +.....++...|++++|++.+
T Consensus 247 ~----~---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 H----N---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T----T---CHHHHHHHHHHHHHHHC----
T ss_pred h----h---HHHHHHHHHHHHHHHhhHHHH
Confidence 2 2 333466777889999988876
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.68 E-value=3.8e-15 Score=152.52 Aligned_cols=200 Identities=14% Similarity=0.175 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLT 218 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li 218 (851)
...|..++..+...|++++|+.+|+++++... .+..++..++.+|...|++++|+++|+++++..+. +..++..++
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la 98 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK--EDAIPYINFANLLSSVNELERALAFYDKALELDSS--AATAYYGAG 98 (243)
T ss_dssp -------------------CCTTHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc--chHHHHHHH
Confidence 34455555556666666666666666654321 24555666666666666666666666666665443 555666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHH
Q 038852 219 KGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDK 298 (851)
Q Consensus 219 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~ 298 (851)
.+|...|++++|+++|+++++.... +..++..++.+|.+.|++++|+++|+++++.... +..++..++.+|.+.|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHH
Confidence 6666666666666666666665433 5556666666666666666666666666655433 4455555556666666666
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038852 299 EAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDN 345 (851)
Q Consensus 299 ~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 345 (851)
+|+++|+++++... .+..++..++.+|...|++++|+++|+++++.
T Consensus 177 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 66666666555542 23455666666666666666666666666653
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.67 E-value=3.5e-14 Score=143.17 Aligned_cols=203 Identities=12% Similarity=0.009 Sum_probs=150.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038852 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHL 217 (851)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~L 217 (851)
+..+|..++..+...|++++|+++|+++++... .+..+|..++.+|...|++++|+++|+++++..+. +..+|..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l 82 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP--KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD--SAEINNNY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--ChHHHHHH
Confidence 455677777788888888888888888776532 35667778888888888888888888888877655 67778888
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcC
Q 038852 218 TKGFVDA-GRIGEAVDLLRDMLSRQLGA-DSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQG 295 (851)
Q Consensus 218 i~~~~~~-g~~~~A~~l~~~m~~~g~~p-d~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g 295 (851)
+.+|... |++++|+++|+++++.+..+ +..++..++.+|...|++++|+++|+++++.... +..++..++.+|.+.|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcC
Confidence 8888888 88888888888887722222 3567777888888888888888888887776544 5667777777778888
Q ss_pred CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038852 296 KDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDN 345 (851)
Q Consensus 296 ~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 345 (851)
++++|+++|+++++.....+...+..++..+...|+.++|..+++.+.+.
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 88888888887777655345566666777777778888887777777653
No 58
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.67 E-value=2.6e-15 Score=153.77 Aligned_cols=204 Identities=12% Similarity=0.108 Sum_probs=142.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 174 d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
....|..++..+...|++++|+.+|+++++..+. +..++..++.+|...|++++|+++|+++++.... +..++..++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la 98 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE--DAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAG 98 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHH
Confidence 4566788888888999999999999999887655 7788888999999999999999999998887654 778888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHH
Q 038852 254 SGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKE 333 (851)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~ 333 (851)
.+|...|++++|+++|+++++.... +..++..++.+|.+.|++++|+++|+++++... .+..++..++.++...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHH
Confidence 8899999999999999888877654 566777777778888888888888887777653 34566777777777778888
Q ss_pred HHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCC
Q 038852 334 EAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKS 388 (851)
Q Consensus 334 ~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~ 388 (851)
+|+++|+++++.... +..++..++.+|...|++++|+++|+++....+.
T Consensus 177 ~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 177 EALSQFAAVTEQDPG------HADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCcc------cHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 888888777765322 5667777777777777777777777777655443
No 59
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.67 E-value=2.5e-14 Score=147.57 Aligned_cols=200 Identities=12% Similarity=0.053 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLT 218 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li 218 (851)
...|..++..+...|++++|+++|+++++... .+..+|..++.+|...|++++|+++|+++++..+. +..+|..++
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP--SSADAHAALAVVFQTEMEPKLADEEYRKALASDSR--NARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--cHHHHHHHH
Confidence 56677777777788888888888887766532 35667777777777888888888888877777654 666777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCH
Q 038852 219 KGFVDAGRIGEAVDLLRDMLSRQLGA-DSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKD 297 (851)
Q Consensus 219 ~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~ 297 (851)
.+|...|++++|+++|+++++.+..+ +..++..++.+|...|++++|+++|+++++.... +..++..++.+|...|++
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCH
Confidence 77777777777777777777622222 4456666777777777777777777776665433 344455555555555555
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 038852 298 KEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLD 344 (851)
Q Consensus 298 ~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~ 344 (851)
++|+++|+++++... .+...+..++.++...|++++|+++++++++
T Consensus 192 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 192 VPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555555544332 2334444455555555555555555555544
No 60
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.67 E-value=3e-14 Score=146.98 Aligned_cols=200 Identities=11% Similarity=0.006 Sum_probs=119.7
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTY 185 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~ 185 (851)
.+..++..+...|++++|+.++++++... ..+..++..++.+|...|++++|+++|+++++... .+..+|..++.+|
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~ 115 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS--RNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CcHHHHHHHHHHH
Confidence 34455566666666666666666666543 23455666666666666666666666666655432 2455566666666
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGP-SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEK 264 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p-~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~ 264 (851)
...|++++|+++|+++++ .+..+ +..+|..++.+|...|++++|+++|+++++.... +..++..++.+|...|++++
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666655 11111 4455666666666666666666666666665433 55666666666666666666
Q ss_pred HHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 038852 265 ANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERN 311 (851)
Q Consensus 265 A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~ 311 (851)
|+++|+++++.... +...+..++.++.+.|++++|.++++++++..
T Consensus 194 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 66666666654432 44555566666666666666666666666554
No 61
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.67 E-value=6e-13 Score=155.89 Aligned_cols=416 Identities=7% Similarity=0.025 Sum_probs=293.7
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHcCCCCCCHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKR---YDDAVALFKYFFDQADIVPNIVSYNNL 181 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~l~~~~~~~~~~~pd~~~~~~L 181 (851)
..+..++..+.+.++++.+..+|++++..- +.....|...+....+.++ ++.+..+|++++......+++..|...
T Consensus 67 ~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Y 145 (679)
T 4e6h_A 67 FLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSY 145 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 356677888888899999999999999764 6678899999998888888 999999999998754334789999988
Q ss_pred HHHHHHcCCh--------HHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhcCC
Q 038852 182 INTYCDEGKV--------DEGMNVFRRIIETAPV-GP-SSNTYRHLTKGFV---------DAGRIGEAVDLLRDMLSRQL 242 (851)
Q Consensus 182 i~~~~~~g~~--------~~A~~l~~~~~~~~~~-~p-~~~~~~~Li~~~~---------~~g~~~~A~~l~~~m~~~g~ 242 (851)
+....+.++. +...++|++++..-+. .+ +...|...+.... ..++++.+..+|++++....
T Consensus 146 l~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~ 225 (679)
T 4e6h_A 146 ITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPM 225 (679)
T ss_dssp HHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCcc
Confidence 8766666554 3455889988876555 44 4578888877654 23457889999999996432
Q ss_pred CCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHhc--CCc---------------c--------chhhH
Q 038852 243 GADSLVYNNLISGFLN-------------LGNLEKANELFDELKQR--CLV---------------Y--------DGVVN 284 (851)
Q Consensus 243 ~pd~~~~~~Li~~~~~-------------~g~~~~A~~~~~~~~~~--~~~---------------~--------d~~~~ 284 (851)
..-..+|......-.. ..+++.|..++.++... ++. | ....|
T Consensus 226 ~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW 305 (679)
T 4e6h_A 226 DCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIW 305 (679)
T ss_dssp SSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHH
Confidence 2122344322221111 12344555555553321 110 0 02345
Q ss_pred HHHHHHHHHcC-------CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHcCCCCCCCccCH
Q 038852 285 ATFMEWWFNQG-------KDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQ-ALFEQMLDNHQPPNIQAVNS 356 (851)
Q Consensus 285 ~~li~~~~~~g-------~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~-~l~~~m~~~~~~p~~~~~~~ 356 (851)
...+..-...+ ..+.+..+|++++.... .+...|...+..+...|+.++|. ++|++++... |. +.
T Consensus 306 ~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~--P~----s~ 378 (679)
T 4e6h_A 306 LEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI--PN----SA 378 (679)
T ss_dssp HHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC--TT----CH
T ss_pred HHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC--CC----CH
Confidence 55554433322 13456678999888754 46789999999999999999997 9999998743 33 67
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhccCCC--------CCCC--------c-cCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 357 DTFNIMVNECFKHGKFSEAIETFKKAGTHPK--------SKPF--------A-MDVAGYNNIIARYCENEMLEEAEKLLR 419 (851)
Q Consensus 357 ~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~--------~-~d~~~~~~li~~~~~~g~~~~A~~l~~ 419 (851)
..|..++..+.+.|++++|.++|++++.... ..+. . -...+|..++....+.|+++.|..+|.
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7888999999999999999999999865310 0000 0 023468888888888999999999999
Q ss_pred HHHhC-CCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC
Q 038852 420 EISTK-SLSPDVTTFRTLIDAYLKV-ERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPK 497 (851)
Q Consensus 420 ~m~~~-g~~pd~~~~~~Ll~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~ 497 (851)
++++. +. ....+|...+..-.+. ++.+.|.++|+++++... .+..++...+......|+.+.|..+|++++.....
T Consensus 459 ~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p-~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 459 KCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA-TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 99875 21 1234444444444444 459999999999998743 34455556778888899999999999999987542
Q ss_pred C--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038852 498 P--DFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYG 530 (851)
Q Consensus 498 p--d~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g 530 (851)
+ ....|..+++.-...|+.+.+.++.+++.+.-
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 2 34678888888889999999999999999864
No 62
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.65 E-value=5.8e-14 Score=141.55 Aligned_cols=203 Identities=12% Similarity=0.002 Sum_probs=157.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 174 d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
+..+|..++.+|...|++++|+++|+++++..+. +..+|..++.+|...|++++|+++|+++++.... +..++..++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK--NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc--chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHH
Confidence 4567888899999999999999999999988765 7788999999999999999999999999887655 778888999
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhcCCcc-chhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC
Q 038852 254 SGFLNL-GNLEKANELFDELKQRCLVY-DGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEK 331 (851)
Q Consensus 254 ~~~~~~-g~~~~A~~~~~~~~~~~~~~-d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~ 331 (851)
.+|... |++++|+++|+++++....+ +..++..++.++...|++++|+++|+++++... .+...+..++.++...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCC
Confidence 999999 99999999999988722211 356677777778888888888888887777653 245667777777777888
Q ss_pred HHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccC
Q 038852 332 KEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTH 385 (851)
Q Consensus 332 ~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~ 385 (851)
+++|+++|+++++.... + +...+..++..+...|+.++|..+++.+...
T Consensus 163 ~~~A~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEV-L----QADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCS-C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-C----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 88888888777764320 1 5666677777777777777777777776543
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.62 E-value=1.3e-14 Score=160.56 Aligned_cols=236 Identities=10% Similarity=0.072 Sum_probs=154.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC--CC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc------cchhhH
Q 038852 216 HLTKGFVDAGRIGEAVDLLRDMLSRQ--LG--A-DSLVYNNLISGFLNLGNLEKANELFDELKQRCLV------YDGVVN 284 (851)
Q Consensus 216 ~Li~~~~~~g~~~~A~~l~~~m~~~g--~~--p-d~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~------~d~~~~ 284 (851)
.++..+...|++++|++.|+++++.- .. + ...++..++.+|...|++++|++.++++++.... ....++
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 36667778888888888888887641 11 1 2357778888888888888888888887754211 123566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCCCCccC
Q 038852 285 ATFMEWWFNQGKDKEAMQSYKSLMERNFRM-----TPATCNTLLEVLLKHEKKEEAQALFEQMLDN----HQPPNIQAVN 355 (851)
Q Consensus 285 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~~-----~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~----~~~p~~~~~~ 355 (851)
..++.+|...|++++|++.|+++++..... ...++..++.+|...|++++|++.|+++++. +..+. .
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~----~ 263 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS----L 263 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG----H
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh----H
Confidence 777778888888888888888777542211 1236777888888888888888888888762 11121 4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HH
Q 038852 356 SDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEM---LEEAEKLLREISTKSLSPD-VT 431 (851)
Q Consensus 356 ~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~pd-~~ 431 (851)
..++..++.+|.+.|++++|+++|+++.......+.......+..+...|...|+ +++|+.++++.. ..++ ..
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~~~~~ 340 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---LYADLED 340 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHHHHHH
Confidence 6678888888888888888888888765432111100112234556666666776 566666665541 1112 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 432 TFRTLIDAYLKVERIDDALELFNRMVE 458 (851)
Q Consensus 432 ~~~~Ll~~~~~~g~~~~A~~~~~~m~~ 458 (851)
++..|+.+|...|++++|.++|+++++
T Consensus 341 ~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 341 FAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 556677777777777777777777665
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.60 E-value=5.8e-14 Score=155.19 Aligned_cols=175 Identities=11% Similarity=-0.014 Sum_probs=111.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC----Cc-cchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------CHH
Q 038852 249 YNNLISGFLNLGNLEKANELFDELKQRC----LV-YDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRM------TPA 317 (851)
Q Consensus 249 ~~~Li~~~~~~g~~~~A~~~~~~~~~~~----~~-~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~------~~~ 317 (851)
+..++..+...|++++|++.|+++++.. .. ....++..++.+|...|++++|++.++++++..... ...
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 3447778888999999999999987641 11 134677888888888888888888888877642211 124
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCC-ccCHH
Q 038852 318 TCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPF-AMDVA 396 (851)
Q Consensus 318 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~d~~ 396 (851)
+++.++.+|...|++++|++.|+++++.....+.......++..++.+|...|++++|+++|+++......... .....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 67778888888888888888888877531111100002246677777777777777777777766542111000 11344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038852 397 GYNNIIARYCENEMLEEAEKLLREIST 423 (851)
Q Consensus 397 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 423 (851)
++..++.+|.+.|++++|...+++.++
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555666666666666666666655543
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.59 E-value=8e-13 Score=141.36 Aligned_cols=222 Identities=10% Similarity=0.008 Sum_probs=177.3
Q ss_pred HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHH-------cCCh-------HHHHHHHHHhcc-CCCCCCCccCHHH
Q 038852 333 EEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFK-------HGKF-------SEAIETFKKAGT-HPKSKPFAMDVAG 397 (851)
Q Consensus 333 ~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~-------~g~~-------~~A~~~~~~~~~-~~~~~~~~~d~~~ 397 (851)
++|+.+|++++... |+ +..+|..++..+.. .|++ ++|+.+|+++.. ..+. +...
T Consensus 33 ~~a~~~~~~al~~~--p~----~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-----~~~~ 101 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GH----HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-----NMLL 101 (308)
T ss_dssp HHHHHHHHHHHHHH--TT----CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-----CHHH
T ss_pred HHHHHHHHHHHHHc--CC----CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-----cHHH
Confidence 68888999988753 33 78888888888763 5886 899999999987 4554 7788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHH-
Q 038852 398 YNNIIARYCENEMLEEAEKLLREISTKSLSPD-VT-TFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNE- 474 (851)
Q Consensus 398 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~-~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~- 474 (851)
|..++..+...|++++|.++|+++++. .|+ .. +|..++..+.+.|++++|+++|+++++.+......+ ...+..
T Consensus 102 ~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~-~~~a~~~ 178 (308)
T 2ond_A 102 YFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY-VTAALME 178 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHH-HHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHH-HHHHHHH
Confidence 999999999999999999999999975 343 33 899999999999999999999999998764433232 222222
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CC--CCHHHHHHHHHHHHhcCCH
Q 038852 475 LITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYG-VG--ITPALQDFVRETFGKAGRG 551 (851)
Q Consensus 475 ~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g-~~--~~~~~~~~L~~~~~~~G~~ 551 (851)
+...|++++|.++|+++++.... +...|..++..+.+.|++++|+.+|+++++.. +. ....++..++.++.+.|++
T Consensus 179 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~ 257 (308)
T 2ond_A 179 YYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp HHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 22379999999999999886443 67888889999999999999999999999863 33 3567888889999999999
Q ss_pred HHHHHHHHhhhhcCCCCC
Q 038852 552 EEIERVLNADRWGYAAPV 569 (851)
Q Consensus 552 ~eA~~ll~~~~~~~~~~p 569 (851)
++|..+++++...+|+..
T Consensus 258 ~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 258 ASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHccccc
Confidence 999999999998888644
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.59 E-value=6.1e-13 Score=142.28 Aligned_cols=221 Identities=10% Similarity=0.065 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHh-cCCCCCHHHHHHHHHHH
Q 038852 192 DEGMNVFRRIIETAPVGPSSNTYRHLTKGFVD-------AGRI-------GEAVDLLRDMLS-RQLGADSLVYNNLISGF 256 (851)
Q Consensus 192 ~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~-------~g~~-------~~A~~l~~~m~~-~g~~pd~~~~~~Li~~~ 256 (851)
++|+.+|+++++.++. +...|..++..+.. .|++ ++|+.+|+++++ .... +...|..++..+
T Consensus 33 ~~a~~~~~~al~~~p~--~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH--HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 4566666666665544 55566666655543 2443 455555555554 2222 344444555555
Q ss_pred HhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHH
Q 038852 257 LNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQ 336 (851)
Q Consensus 257 ~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~ 336 (851)
.+.|++++|+++|+++++ ..+.....+|..++..+.+.|++++|+
T Consensus 110 ~~~~~~~~A~~~~~~al~-----------------------------------~~p~~~~~~~~~~~~~~~~~~~~~~A~ 154 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLA-----------------------------------IEDIDPTLVYIQYMKFARRAEGIKSGR 154 (308)
T ss_dssp HHTTCHHHHHHHHHHHHT-----------------------------------SSSSCTHHHHHHHHHHHHHHHCHHHHH
T ss_pred HhcCCHHHHHHHHHHHHh-----------------------------------ccccCccHHHHHHHHHHHHhcCHHHHH
Confidence 555555555555554444 322111125666666666666666666
Q ss_pred HHHHHHHHcCCCCCCCccCHHHHHHHHHHHHH-cCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHH
Q 038852 337 ALFEQMLDNHQPPNIQAVNSDTFNIMVNECFK-HGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAE 415 (851)
Q Consensus 337 ~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~ 415 (851)
.+|+++++.. |. +..+|...+..... .|++++|+++|+++....+. +...|..++..+.+.|++++|+
T Consensus 155 ~~~~~a~~~~--p~----~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~g~~~~A~ 223 (308)
T 2ond_A 155 MIFKKAREDA--RT----RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-----IPEYVLAYIDYLSHLNEDNNTR 223 (308)
T ss_dssp HHHHHHHTST--TC----CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHhcC--CC----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHCCCHHHHH
Confidence 6666666532 21 33444444333222 57777777777776655443 5666777777777777777777
Q ss_pred HHHHHHHhCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 038852 416 KLLREISTKS-LSP--DVTTFRTLIDAYLKVERIDDALELFNRMVESGL 461 (851)
Q Consensus 416 ~l~~~m~~~g-~~p--d~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~ 461 (851)
.+|++++... +.| ....|..++..+.+.|++++|..+++++++...
T Consensus 224 ~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 224 VLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 7777777642 233 356777777777777777778777777776544
No 67
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.58 E-value=7.8e-14 Score=158.80 Aligned_cols=217 Identities=11% Similarity=0.061 Sum_probs=174.5
Q ss_pred CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 038852 153 KRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKV-DEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAV 231 (851)
Q Consensus 153 g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~-~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~ 231 (851)
+++++++..+++..... ..+...|..++.+|...|++ ++|++.|+++++.++. +..+|..++.+|...|++++|+
T Consensus 82 ~~~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~g~~~~A~ 157 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE--LVEAWNQLGEVYWKKGDVTSAH 157 (474)
T ss_dssp HHHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHH
Confidence 34667777777764432 24678888999999999999 9999999999998766 7889999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHc--------
Q 038852 232 DLLRDMLSRQLGADSLVYNNLISGFLNL---------GNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQ-------- 294 (851)
Q Consensus 232 ~l~~~m~~~g~~pd~~~~~~Li~~~~~~---------g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~-------- 294 (851)
+.|+++++.. |+..++..++.+|... |++++|++.|+++++.... +...+..++.+|...
T Consensus 158 ~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 158 TCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhcccc
Confidence 9999999875 4578888899999998 8999999999998887665 677888888888887
Q ss_pred CCHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCCh
Q 038852 295 GKDKEAMQSYKSLMERNFR--MTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKF 372 (851)
Q Consensus 295 g~~~~A~~l~~~~~~~~~~--~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~ 372 (851)
|++++|++.|+++++.+.. .+...|..++.+|...|++++|++.|+++++.. |+ +..++..++.++...|++
T Consensus 235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~----~~~a~~~l~~~~~~lg~~ 308 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PA----WPEPQQREQQLLEFLSRL 308 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----CHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC----CHHHHHHHHHHHHHHHHH
Confidence 8888888888888877542 466778888888888888888888888887743 33 677788888888888888
Q ss_pred HHHHHHHHHh
Q 038852 373 SEAIETFKKA 382 (851)
Q Consensus 373 ~~A~~~~~~~ 382 (851)
++|++.+.++
T Consensus 309 ~eAi~~~~~~ 318 (474)
T 4abn_A 309 TSLLESKGKT 318 (474)
T ss_dssp HHHHHHTTTC
T ss_pred HHHHHHhccc
Confidence 8887766544
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.58 E-value=4e-13 Score=131.53 Aligned_cols=165 Identities=16% Similarity=0.150 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLT 218 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li 218 (851)
..+|..++.+|.+.|++++|++.|+++++..+ -+..+|..++.+|.+.|++++|+..++++....+. +..++..++
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~ 80 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP--NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT--SAEAYYILG 80 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch--hHHHHHHHH
Confidence 34444455555555555555555555444322 23444444444555555555555555554444333 344444444
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHH
Q 038852 219 KGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDK 298 (851)
Q Consensus 219 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~ 298 (851)
..+...+++++|.+.+.++.+.... +..++..++.+|.+.|++++|++.|+++++.+.. +..++..++.+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHH
Confidence 4444455555555555444444333 4444444444444444444444444444444332 3333444444444444444
Q ss_pred HHHHHHHHHHH
Q 038852 299 EAMQSYKSLME 309 (851)
Q Consensus 299 ~A~~l~~~~~~ 309 (851)
+|++.|+++++
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 44444444433
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.58 E-value=4.4e-13 Score=131.19 Aligned_cols=167 Identities=14% Similarity=0.190 Sum_probs=137.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 174 d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
+..+|..|+.+|...|++++|++.|+++++.+|. +..+|..++.+|.+.|++++|++.++++...... +..++..++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN--NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence 5678889999999999999999999999998877 7888999999999999999999999998887665 778888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHH
Q 038852 254 SGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKE 333 (851)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~ 333 (851)
..+...++++.|.+.++++.+.... +..++..++.+|.+.|++++|++.|+++++.++ .+..+|..++.+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHH
Confidence 8889999999999999888877655 667777777788888888888888888777754 35567777788888888888
Q ss_pred HHHHHHHHHHHc
Q 038852 334 EAQALFEQMLDN 345 (851)
Q Consensus 334 ~A~~l~~~m~~~ 345 (851)
+|++.|+++++.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 888888877763
No 70
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.57 E-value=1.6e-13 Score=151.42 Aligned_cols=238 Identities=9% Similarity=0.018 Sum_probs=159.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc------cchh
Q 038852 214 YRHLTKGFVDAGRIGEAVDLLRDMLSRQLG-AD----SLVYNNLISGFLNLGNLEKANELFDELKQRCLV------YDGV 282 (851)
Q Consensus 214 ~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~------~d~~ 282 (851)
|..++..+...|++++|++.|+++++.... .| ..++..++.+|...|++++|+..++++++.... ....
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 444566677788888888888888764211 12 356777888888888888888888877653111 1245
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCCCCcc
Q 038852 283 VNATFMEWWFNQGKDKEAMQSYKSLMERNF-----RMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNH---QPPNIQAV 354 (851)
Q Consensus 283 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-----~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~---~~p~~~~~ 354 (851)
++..++.+|...|++++|++.|+++++... .....+++.|+.+|...|++++|++.|+++++.. ..+.
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~---- 259 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL---- 259 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG----
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh----
Confidence 667777888888888888888887776321 1122467778888888888888888888887611 1111
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-H
Q 038852 355 NSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEM---LEEAEKLLREISTKSLSPD-V 430 (851)
Q Consensus 355 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~pd-~ 430 (851)
...++..++.+|.+.|++++|+.+|+++.......+.......+..+...|...++ +++|+.++++. +..++ .
T Consensus 260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~ 336 (378)
T 3q15_A 260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIE 336 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHH
Confidence 35677888888888888888888888876554332222234455666666666777 66777666652 11122 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 431 TTFRTLIDAYLKVERIDDALELFNRMVE 458 (851)
Q Consensus 431 ~~~~~Ll~~~~~~g~~~~A~~~~~~m~~ 458 (851)
..+..++..|...|++++|.++|+++++
T Consensus 337 ~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 337 ACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3556777788888888888888877765
No 71
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.57 E-value=6.5e-13 Score=145.98 Aligned_cols=233 Identities=14% Similarity=0.075 Sum_probs=108.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCH----HHHHHHH
Q 038852 111 VQSLIRAGDLDAASYLARQAVFSRIRPTV----FTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNI----VSYNNLI 182 (851)
Q Consensus 111 l~~l~~~g~~~~A~~l~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~----~~~~~Li 182 (851)
...+...|++++|..++++++......+. .+++.+...+...|++++|++.|++++....-..+. .+++.+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34445566666666666665554322222 134445555556666666666666654321111121 2344555
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCC---CC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----CHHHHHHH
Q 038852 183 NTYCDEGKVDEGMNVFRRIIETAP---VG--P-SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGA----DSLVYNNL 252 (851)
Q Consensus 183 ~~~~~~g~~~~A~~l~~~~~~~~~---~~--p-~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p----d~~~~~~L 252 (851)
.++...|++++|++.|+++++... .. + ...++..++.++...|++++|++++++.++..... ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 556666666666666665554321 10 1 12344455555666666666666666655432211 12345555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCccc--hhhHH----HHHHHHHHcCCHHHHHHHHHHHHHhcCCC---CHHHHHHHH
Q 038852 253 ISGFLNLGNLEKANELFDELKQRCLVYD--GVVNA----TFMEWWFNQGKDKEAMQSYKSLMERNFRM---TPATCNTLL 323 (851)
Q Consensus 253 i~~~~~~g~~~~A~~~~~~~~~~~~~~d--~~~~~----~li~~~~~~g~~~~A~~l~~~~~~~~~~~---~~~~~~~Li 323 (851)
+.++...|++++|..+++++.......+ ..... ..+..+...|++++|..+++++....... ....+..++
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 5555566666666666555543211100 00000 12223445555555555555444322110 012233444
Q ss_pred HHHHhCCCHHHHHHHHHHHH
Q 038852 324 EVLLKHEKKEEAQALFEQML 343 (851)
Q Consensus 324 ~~~~~~g~~~~A~~l~~~m~ 343 (851)
.++...|++++|++++++++
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 44555555555555554443
No 72
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.57 E-value=9.2e-13 Score=144.76 Aligned_cols=282 Identities=11% Similarity=0.059 Sum_probs=147.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHH
Q 038852 179 NNLINTYCDEGKVDEGMNVFRRIIETAPVGPSS----NTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG-ADSLVYNNLI 253 (851)
Q Consensus 179 ~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~----~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~~~~~Li 253 (851)
..+...+...|++++|+.++++++...+.. +. .+++.++.++...|++++|+++++++++.... .+...
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----- 91 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPG-WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY----- 91 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH-----
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH-----
Confidence 334444555666666666666665544221 11 13444455555555555555555555442110 01100
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhc----CC--C-CHHHHHHHHHHH
Q 038852 254 SGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERN----FR--M-TPATCNTLLEVL 326 (851)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~----~~--~-~~~~~~~Li~~~ 326 (851)
...++..+..++...|++++|+++|+++++.. .. + ...++..+..++
T Consensus 92 --------------------------~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 145 (373)
T 1hz4_A 92 --------------------------ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLL 145 (373)
T ss_dssp --------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHH
Confidence 01122333444444444444444444444321 00 1 123455566677
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHH--HHHHHH
Q 038852 327 LKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGY--NNIIAR 404 (851)
Q Consensus 327 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~--~~li~~ 404 (851)
...|++++|+.++++.+......... ....++..++.++...|++++|+.+++++.......+........ ..++..
T Consensus 146 ~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 224 (373)
T 1hz4_A 146 WAWARLDEAEASARSGIEVLSSYQPQ-QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIY 224 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTTSCGG-GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHhhccCcH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHH
Confidence 77777777777777776543221100 023466677777777788888877777765432111110001111 123344
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----Cccc-hhHHHHHHHHHH
Q 038852 405 YCENEMLEEAEKLLREISTKSLSP---DVTTFRTLIDAYLKVERIDDALELFNRMVESG----LRVV-VSFGTKVFNELI 476 (851)
Q Consensus 405 ~~~~g~~~~A~~l~~~m~~~g~~p---d~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~----~~~~-~~~~~~L~~~~~ 476 (851)
+...|++++|..++++........ ....+..++.++...|++++|+++++++.+.. .... ...+..+..+|.
T Consensus 225 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~ 304 (373)
T 1hz4_A 225 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 304 (373)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH
Confidence 667788888888887776532211 12345667777778888888888887776531 1111 124444566677
Q ss_pred HcCCHHHHHHHHHHHhh
Q 038852 477 TKGKVAECAPILTKMGE 493 (851)
Q Consensus 477 ~~g~~~~A~~ll~~m~~ 493 (851)
..|++++|...|++.++
T Consensus 305 ~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 305 QAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHH
Confidence 77777777777777654
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.57 E-value=1.4e-13 Score=156.65 Aligned_cols=217 Identities=9% Similarity=-0.000 Sum_probs=160.5
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHH
Q 038852 226 RIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNL-EKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSY 304 (851)
Q Consensus 226 ~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~-~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~ 304 (851)
++++++..+++..+.... +...+..++.+|...|++ ++|+++|+++++.+.. +..++..++.+|.+.|++++|++.|
T Consensus 83 ~~~~al~~l~~~~~~~~~-~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQV-EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCch-hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 366777777777665443 778888888999999999 9999999988887665 6778888888888888888888888
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHc------
Q 038852 305 KSLMERNFRMTPATCNTLLEVLLKH---------EKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKH------ 369 (851)
Q Consensus 305 ~~~~~~~~~~~~~~~~~Li~~~~~~---------g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~------ 369 (851)
+++++.+.. ..++..++.+|... |++++|+++|+++++.. |+ +..+|..++.+|...
T Consensus 161 ~~al~~~p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~----~~~~~~~lg~~~~~~~~~~~~ 232 (474)
T 4abn_A 161 SGALTHCKN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VL----DGRSWYILGNAYLSLYFNTGQ 232 (474)
T ss_dssp HHHHTTCCC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TT----CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhhCCC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CC----CHHHHHHHHHHHHHHHHhhcc
Confidence 888887643 57888888888888 88899999999888853 33 677888888888887
Q ss_pred --CChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 038852 370 --GKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERID 447 (851)
Q Consensus 370 --g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~ 447 (851)
|++++|++.|+++....+. ..-+...|..++.+|...|++++|++.|+++++... -+...+..+..++...|+++
T Consensus 233 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~ 309 (474)
T 4abn_A 233 NPKISQQALSAYAQAEKVDRK--ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLT 309 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHCGG--GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhCCC--cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHH
Confidence 7778888777777654330 001666677777777777777777777777665422 24556666666666666666
Q ss_pred HHHHHHHH
Q 038852 448 DALELFNR 455 (851)
Q Consensus 448 ~A~~~~~~ 455 (851)
+|++.+.+
T Consensus 310 eAi~~~~~ 317 (474)
T 4abn_A 310 SLLESKGK 317 (474)
T ss_dssp HHHHHTTT
T ss_pred HHHHHhcc
Confidence 66655443
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.55 E-value=1.9e-14 Score=153.04 Aligned_cols=170 Identities=20% Similarity=0.186 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcC------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCC
Q 038852 140 FTCNAIIAAMYRAKRYDDAVALFKYFFDQA------DIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIET------APV 207 (851)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~------~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~------~~~ 207 (851)
.++..++..+...|++++|+.+|+++++.. .......++..++.+|...|++++|+++|+++++. ...
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 445555555555566666666555554410 01112344555666666666666666666665543 111
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----
Q 038852 208 GPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQ------L-GADSLVYNNLISGFLNLGNLEKANELFDELKQR----- 275 (851)
Q Consensus 208 ~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g------~-~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~----- 275 (851)
.....++..++.+|...|++++|+++|+++++.. . .....++..++.+|...|++++|+++|+++++.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 1123455566666666666666666666665431 1 112345556666666666666666666666543
Q ss_pred -C-CccchhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 276 -C-LVYDGVVNATFMEWWFNQGKDKEAMQSYKSLME 309 (851)
Q Consensus 276 -~-~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~ 309 (851)
+ ......++..++.+|...|++++|+++|+++++
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 111234555566666666666666666666554
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.55 E-value=3.5e-13 Score=148.61 Aligned_cols=242 Identities=7% Similarity=-0.052 Sum_probs=168.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCC-c-cCHH
Q 038852 319 CNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPF-A-MDVA 396 (851)
Q Consensus 319 ~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~-~d~~ 396 (851)
+...+..+...|++++|+..|+++++....-........++..++.+|...|++++|+..++++......... . ....
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 3445666778888999999888887642111101113567888888999999999999888887654322211 1 1356
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCccchh
Q 038852 397 GYNNIIARYCENEMLEEAEKLLREISTKS--LS--P-DVTTFRTLIDAYLKVERIDDALELFNRMVE-----SGLRVVVS 466 (851)
Q Consensus 397 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~--p-d~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~ 466 (851)
+++.++.+|...|++++|++.|+++++.. .. . ...++..|+.+|...|++++|+++|+++++ ..... ..
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HH
Confidence 77888899999999999999988876531 11 1 134678889999999999999999999887 44333 55
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCC----CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCCHHHHH
Q 038852 467 FGTKVFNELITKGKVAECAPILTKMGEKDP----KPDFLIYDVVVRGLCNEGL---FDMSKDIVDQMMKYGVGITPALQD 539 (851)
Q Consensus 467 ~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~----~pd~~~~~~ll~a~~~~g~---~~~A~~~~~~m~~~g~~~~~~~~~ 539 (851)
.+..++.+|.+.|++++|+.++++.++... ......+..+...+...++ +++|+.++++.. ........+.
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~ 340 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHHH
Confidence 566688899999999999999998876421 1123345555556666777 777777776521 1112234555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhhh
Q 038852 540 FVRETFGKAGRGEEIERVLNADRW 563 (851)
Q Consensus 540 ~L~~~~~~~G~~~eA~~ll~~~~~ 563 (851)
.++.+|.+.|++++|.++|++...
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 689999999999999999988754
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.55 E-value=2.9e-14 Score=151.61 Aligned_cols=171 Identities=22% Similarity=0.246 Sum_probs=140.3
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc------CCC
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFS-------RIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQ------ADI 171 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~------~~~ 171 (851)
..+..+...+...|++++|+.++++++.. .......++..++.+|...|++++|+++|+++++. ...
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45778899999999999999999998874 23335678889999999999999999999998764 222
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----
Q 038852 172 VPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETA-----PV-GPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSR----- 240 (851)
Q Consensus 172 ~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~-----~~-~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~----- 240 (851)
.....++..++.+|...|++++|+++|+++++.. +. .....++..++.+|...|++++|+++|+++++.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 2246688999999999999999999999998762 12 124567889999999999999999999999875
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038852 241 -QLGA-DSLVYNNLISGFLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 241 -g~~p-d~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~ 275 (851)
+..+ ...++..++.+|...|++++|+++|+++++.
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2121 3467889999999999999999999998864
No 77
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.54 E-value=9.7e-15 Score=170.72 Aligned_cols=119 Identities=15% Similarity=0.111 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHH--cCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFD--QADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRH 216 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~--~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~ 216 (851)
..+||+||++|++.|++++|.++|++|.+ ..|+.||++|||+||.+|++.|++++|+++|++|.+. ++.||..||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHHHH
Confidence 45677777777777777777777776643 2356777777777777777777777777777777554 37777777777
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038852 217 LTKGFVDAGR-IGEAVDLLRDMLSRQLGADSLVYNNLISGFLN 258 (851)
Q Consensus 217 Li~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~ 258 (851)
||.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 7777777776 46677777777777777777777777654433
No 78
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.54 E-value=8.5e-15 Score=171.20 Aligned_cols=119 Identities=13% Similarity=0.246 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038852 356 SDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRT 435 (851)
Q Consensus 356 ~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~ 435 (851)
..+|+.|+++||+.|++++|.++|++|... ...++.||+++||+||.+||+.|++++|+++|++|.+.|+.||.+||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m-~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQ-RQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHS-HHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 457777777777777777777777777543 2235566777777777777777777777777777777777777777777
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHHHcCCccchhHHHHHHHHH
Q 038852 436 LIDAYLKVER-IDDALELFNRMVESGLRVVVSFGTKVFNEL 475 (851)
Q Consensus 436 Ll~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~ 475 (851)
||.+|++.|+ .++|.++|++|.+.|+.|+..+|+.++..+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 7777777776 366777777777777777777777665433
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.45 E-value=8.5e-12 Score=121.08 Aligned_cols=165 Identities=22% Similarity=0.220 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038852 140 FTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTK 219 (851)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~ 219 (851)
..|..++..+...|++++|+++|+++++.. ..+..++..++.+|...|++++|+++|+++++..+. +..+|..++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~ 84 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD--NVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHH
Confidence 345566666677777777777777665432 235666777777777777777777777777766544 5666777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHH
Q 038852 220 GFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKE 299 (851)
Q Consensus 220 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~ 299 (851)
++...|++++|+++|+++++.... +..++..++.+|...|++++|+++|+++++.... +..++..++.+|...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHH
Confidence 777777777777777777766443 5666667777777777777777777776665433 44555556666666666666
Q ss_pred HHHHHHHHHHh
Q 038852 300 AMQSYKSLMER 310 (851)
Q Consensus 300 A~~l~~~~~~~ 310 (851)
|+++|+++++.
T Consensus 163 A~~~~~~~~~~ 173 (186)
T 3as5_A 163 ALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 66666655544
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.45 E-value=3.3e-12 Score=151.46 Aligned_cols=165 Identities=13% Similarity=0.105 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLT 218 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li 218 (851)
..+|+.|..+|.+.|++++|++.|+++++... -+..+|+.|+.+|.+.|++++|++.|+++++.++. +..+|+.|+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P--~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~--~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFP--EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT--FADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHH
Confidence 45566666666666666666666666655432 23556666666666666666666666666666554 555666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHH
Q 038852 219 KGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDK 298 (851)
Q Consensus 219 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~ 298 (851)
.+|...|++++|++.|+++++.... +..+|..++.+|.+.|++++|++.|+++++.+.. +...+..++.+|...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence 6666666666666666666665444 5566666666666666666666666666665544 4556666666666666666
Q ss_pred HHHHHHHHHHH
Q 038852 299 EAMQSYKSLME 309 (851)
Q Consensus 299 ~A~~l~~~~~~ 309 (851)
+|++.|+++++
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666665544
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.45 E-value=1.3e-12 Score=136.52 Aligned_cols=135 Identities=19% Similarity=0.172 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----C-
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETA-----PV-GPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQ-----L- 242 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~-----~~-~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g-----~- 242 (851)
..++..++.+|...|++++|+.+|+++++.. +. .....+|..++.+|...|++++|+++|+++++.. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 3445555555555555555555555555431 11 1123455555666666666666666666555431 0
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------C-CccchhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 243 -GADSLVYNNLISGFLNLGNLEKANELFDELKQR------C-LVYDGVVNATFMEWWFNQGKDKEAMQSYKSLME 309 (851)
Q Consensus 243 -~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~------~-~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~ 309 (851)
.....++..++.+|...|++++|+++|+++++. . ......++..++.+|...|++++|+++|+++++
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 112345556666666666666666666665543 0 111234555555666666666666666665554
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.43 E-value=4.7e-12 Score=150.14 Aligned_cols=166 Identities=16% Similarity=0.213 Sum_probs=149.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 174 d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
+..+|+.|+.+|.+.|++++|++.|+++++.++. +..+|+.|+.+|.+.|++++|++.|+++++.... +..+|..|+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~--~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE--FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 4678999999999999999999999999999877 8889999999999999999999999999998766 789999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHH
Q 038852 254 SGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKE 333 (851)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~ 333 (851)
.+|.+.|++++|++.|+++++.+.. +...+..++.+|.+.|++++|++.|+++++.+.. +...|..|+.+|...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence 9999999999999999999988766 7788899999999999999999999999988753 5677888999999999999
Q ss_pred HHHHHHHHHHH
Q 038852 334 EAQALFEQMLD 344 (851)
Q Consensus 334 ~A~~l~~~m~~ 344 (851)
+|++.|+++++
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98888888765
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.41 E-value=2e-12 Score=134.97 Aligned_cols=158 Identities=21% Similarity=0.214 Sum_probs=123.3
Q ss_pred CCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC------CCCCCHHHHHHHHHH
Q 038852 118 GDLDAASYLARQAVF-------SRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQA------DIVPNIVSYNNLINT 184 (851)
Q Consensus 118 g~~~~A~~l~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~------~~~pd~~~~~~Li~~ 184 (851)
|++++|+.++++++. ........++..++.+|...|++++|+.+|+++++.. .......+|..++.+
T Consensus 15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 94 (283)
T 3edt_B 15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94 (283)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 455555555555443 2222346788999999999999999999999987652 112235688999999
Q ss_pred HHHcCChHHHHHHHHHHHHhC-----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCC-CHHHHHH
Q 038852 185 YCDEGKVDEGMNVFRRIIETA-----PV-GPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSR------QLGA-DSLVYNN 251 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~-----~~-~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~------g~~p-d~~~~~~ 251 (851)
|...|++++|+++|+++++.. +. .....+|..++.+|...|++++|+++|+++++. ...+ ...++..
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 174 (283)
T 3edt_B 95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174 (283)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 999999999999999998761 11 124678899999999999999999999999876 1111 3568889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 038852 252 LISGFLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 252 Li~~~~~~g~~~~A~~~~~~~~~~ 275 (851)
++.+|...|++++|+++|+++++.
T Consensus 175 la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 175 LASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999998864
No 84
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.41 E-value=1.8e-11 Score=118.70 Aligned_cols=165 Identities=15% Similarity=0.163 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLIS 254 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~ 254 (851)
...|..++..+...|++++|+++|+++++..+. +..++..++.++...|++++|+++|+++++.... +..++..++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 84 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF--DVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 345666777777778888888888777665543 6677777777777888888888888877776444 6677777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHH
Q 038852 255 GFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEE 334 (851)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~ 334 (851)
+|...|++++|+++|+++.+.... +..++..++.+|...|++++|+++|+++++... .+..++..++.++...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHH
Confidence 777777777777777777765443 455555666666666666666666666665542 234555556666666666666
Q ss_pred HHHHHHHHHH
Q 038852 335 AQALFEQMLD 344 (851)
Q Consensus 335 A~~l~~~m~~ 344 (851)
|+++|+++++
T Consensus 163 A~~~~~~~~~ 172 (186)
T 3as5_A 163 ALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.40 E-value=3.9e-11 Score=127.12 Aligned_cols=224 Identities=14% Similarity=0.104 Sum_probs=128.7
Q ss_pred ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---CCC-CHHHHHHHHHHHHHcCCHHH
Q 038852 154 RYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAP---VGP-SSNTYRHLTKGFVDAGRIGE 229 (851)
Q Consensus 154 ~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~---~~p-~~~~~~~Li~~~~~~g~~~~ 229 (851)
++++|+..|+++ +.+|...|++++|++.|+++++... ... ...+|+.++.+|...|++++
T Consensus 32 ~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 366776666654 2345666777777777776665421 000 13456666666666666666
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHc-CCHHHHHHHHHHHH
Q 038852 230 AVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQ-GKDKEAMQSYKSLM 308 (851)
Q Consensus 230 A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~-g~~~~A~~l~~~~~ 308 (851)
|+..|+++++.. ...|+...+ ..++..++.+|... |++++|++.|++++
T Consensus 96 A~~~~~~Al~l~---------------~~~g~~~~~---------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al 145 (292)
T 1qqe_A 96 AVDSLENAIQIF---------------THRGQFRRG---------------ANFKFELGEILENDLHDYAKAIDCYELAG 145 (292)
T ss_dssp HHHHHHHHHHHH---------------HHTTCHHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---------------HHcCCHHHH---------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 666666655421 111111111 22344555556664 66666666666665
Q ss_pred HhcCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 038852 309 ERNFRMT-----PATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQA-VNSDTFNIMVNECFKHGKFSEAIETFKKA 382 (851)
Q Consensus 309 ~~~~~~~-----~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~-~~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 382 (851)
+.....+ ..+++.++.+|...|++++|+.+|+++++......... ....+|..++.++...|++++|+..|+++
T Consensus 146 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 146 EWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5422111 24677888899999999999999999988543321100 01236788888899999999999999998
Q ss_pred ccCCCCCCCccCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHh
Q 038852 383 GTHPKSKPFAMDVAGYNNIIARYC--ENEMLEEAEKLLREIST 423 (851)
Q Consensus 383 ~~~~~~~~~~~d~~~~~~li~~~~--~~g~~~~A~~l~~~m~~ 423 (851)
....+..........+..++.+|. ..+++++|++.|+++..
T Consensus 226 l~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 226 QSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp GCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 776544221112223444555554 34567777777766543
No 86
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.38 E-value=3.7e-11 Score=121.87 Aligned_cols=197 Identities=14% Similarity=0.086 Sum_probs=135.4
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038852 137 PTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRH 216 (851)
Q Consensus 137 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~ 216 (851)
.|...+..++..+...|++++|++.|+++++... ..+...+..++.+|...|++++|++.|+++++.++. +..+|..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN--LANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS--HHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc--hHHHHHH
Confidence 3567778888888888888888888888877542 146666777888888888888888888888887655 6778888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcc-chhhHHHHH
Q 038852 217 LTKGFVDAGRIGEAVDLLRDMLSRQLGADS-------LVYNNLISGFLNLGNLEKANELFDELKQRCLVY-DGVVNATFM 288 (851)
Q Consensus 217 Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~-d~~~~~~li 288 (851)
++.+|...|++++|++.|+++++.... +. .+|..++.++...|++++|++.|+++++.+... +...+..++
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 888888888888888888888887554 55 457777788888888888888888887764320 245566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038852 289 EWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDN 345 (851)
Q Consensus 289 ~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 345 (851)
.+|...|+ .+++++..... .+...|..+. ....+.+++|+..|+++++.
T Consensus 161 ~~~~~~~~-----~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFYNNGA-----DVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHH-----HHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 66654433 23333333321 1222332222 23345567777777777764
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.36 E-value=2.8e-11 Score=128.19 Aligned_cols=210 Identities=11% Similarity=0.018 Sum_probs=141.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC---CCCC-CHHHHHHHHHHHHHcCChHHH
Q 038852 119 DLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQA---DIVP-NIVSYNNLINTYCDEGKVDEG 194 (851)
Q Consensus 119 ~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~---~~~p-d~~~~~~Li~~~~~~g~~~~A 194 (851)
++++|...|+++ +..|...|++++|++.|+++++.. +... ...+|+.++.+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777665 446778999999999999887642 2111 156899999999999999999
Q ss_pred HHHHHHHHHhCCCCCC----HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCC-C----HHHHHHHHHHHHhcCCHHH
Q 038852 195 MNVFRRIIETAPVGPS----SNTYRHLTKGFVDA-GRIGEAVDLLRDMLSRQLGA-D----SLVYNNLISGFLNLGNLEK 264 (851)
Q Consensus 195 ~~l~~~~~~~~~~~p~----~~~~~~Li~~~~~~-g~~~~A~~l~~~m~~~g~~p-d----~~~~~~Li~~~~~~g~~~~ 264 (851)
+..|+++++..+..-+ ..+|+.++.+|... |++++|++.|+++++..... + ..++..++.+|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999999876422112 34778888888885 88888888888887653211 1 3467778888888888888
Q ss_pred HHHHHHHHHhcCCccch------hhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHH--hCCCH
Q 038852 265 ANELFDELKQRCLVYDG------VVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMT----PATCNTLLEVLL--KHEKK 332 (851)
Q Consensus 265 A~~~~~~~~~~~~~~d~------~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~----~~~~~~Li~~~~--~~g~~ 332 (851)
|+++|+++++....... ..+..++.++...|++++|+..|+++++...... ...+..++.+|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 88888888776543221 1456666677777777777777777665433211 112333444443 33456
Q ss_pred HHHHHHHHHHH
Q 038852 333 EEAQALFEQML 343 (851)
Q Consensus 333 ~~A~~l~~~m~ 343 (851)
++|++.|++++
T Consensus 257 ~~A~~~~~~~~ 267 (292)
T 1qqe_A 257 SEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHhccCC
Confidence 66666665554
No 88
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.36 E-value=1.2e-09 Score=124.36 Aligned_cols=125 Identities=14% Similarity=-0.008 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHH-HcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 038852 431 TTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELI-TKGKVAECAPILTKMGEKDPKPDFLIYDVVVRG 509 (851)
Q Consensus 431 ~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~-~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a 509 (851)
.+|...+..+.+.++++.|..+|+++ ... ......+...+..-. ..++.+.|..+|+..++.... +...+..+++.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 34555555555566666666666666 211 112222211111111 123566667777666654221 33444555555
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 038852 510 LCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNADRW 563 (851)
Q Consensus 510 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~~~ 563 (851)
....|+.+.|..+|+++. ....++...++.-...|+.+.+.+++++...
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566666677776666652 2355666666666666777766666666654
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.35 E-value=4.4e-11 Score=124.24 Aligned_cols=172 Identities=13% Similarity=0.122 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-HHHHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN-IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS-SNTYRH 216 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd-~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~-~~~~~~ 216 (851)
...+..++..+.+.|++++|++.|+++++..+..+. ..++..++.+|...|++++|+..|+++++..|..++ ..++..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 344444555555555555555555555443321111 344555555555555555555555555555443222 334455
Q ss_pred HHHHHHH--------cCCHHHHHHHHHHHHhcCCCCCHHH-----------------HHHHHHHHHhcCCHHHHHHHHHH
Q 038852 217 LTKGFVD--------AGRIGEAVDLLRDMLSRQLGADSLV-----------------YNNLISGFLNLGNLEKANELFDE 271 (851)
Q Consensus 217 Li~~~~~--------~g~~~~A~~l~~~m~~~g~~pd~~~-----------------~~~Li~~~~~~g~~~~A~~~~~~ 271 (851)
++.++.. .|++++|+..|+++++.... +... +..++.+|.+.|++++|+..|++
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5555555 55555555555555554322 1111 23444555555555555555555
Q ss_pred HHhcCCcc--chhhHHHHHHHHHHc----------CCHHHHHHHHHHHHHhc
Q 038852 272 LKQRCLVY--DGVVNATFMEWWFNQ----------GKDKEAMQSYKSLMERN 311 (851)
Q Consensus 272 ~~~~~~~~--d~~~~~~li~~~~~~----------g~~~~A~~l~~~~~~~~ 311 (851)
+++..... ....+..++.+|... |++++|++.|+++++..
T Consensus 174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 55443221 123344444444433 44455555555544443
No 90
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.35 E-value=8e-11 Score=119.42 Aligned_cols=205 Identities=14% Similarity=0.046 Sum_probs=161.7
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT 184 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~ 184 (851)
..+......+...|++++|+..|++++......+...+..++.++...|++++|++.|+++++..+ .+..+|..++.+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~ 85 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY--NLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC--SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc--chHHHHHHHHHH
Confidence 467888999999999999999999999887547778888899999999999999999999987543 356789999999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHH
Q 038852 185 YCDEGKVDEGMNVFRRIIETAPVGPSS-------NTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGAD---SLVYNNLIS 254 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~~~~p~~-------~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~~~~~Li~ 254 (851)
|...|++++|++.|+++++..+. +. .+|..++.++...|++++|++.|+++++.. |+ ..+|..++.
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPG--NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHHH
Confidence 99999999999999999998876 55 568899999999999999999999999863 33 467888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 038852 255 GFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLE 324 (851)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~ 324 (851)
+|...| ..+++++...... +...+..+ .....+.+++|+..|+++++.++. +..+...+..
T Consensus 162 ~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~ 222 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLASS-NKEKYASE--KAKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQDQ 222 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGTTT-CHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcccC-CHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence 886554 4445555554332 23333322 344567799999999999998753 3444444433
No 91
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.33 E-value=9.7e-10 Score=116.04 Aligned_cols=224 Identities=10% Similarity=0.054 Sum_probs=134.9
Q ss_pred HcCCh-hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HH
Q 038852 151 RAKRY-DDAVALFKYFFDQADIVPNIVSYNNLINTYCDEG--KVDEGMNVFRRIIETAPVGPSSNTYRHLTKGF----VD 223 (851)
Q Consensus 151 ~~g~~-~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g--~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~----~~ 223 (851)
+.|.+ ++|++++++++..++ -+..+|+....++...| ++++++++++.++..++. +..+|+....++ ..
T Consensus 44 ~~~e~s~~aL~~t~~~L~~nP--~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk--~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 44 KAEEYSERALHITELGINELA--SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK--NYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT--CCHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCc--HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc--cHHHHHHHHHHHHHHHHh
Confidence 33433 567777777766432 24556666666666666 777777777777776655 445565555555 44
Q ss_pred c---CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHH
Q 038852 224 A---GRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLE--KANELFDELKQRCLVYDGVVNATFMEWWFNQGKDK 298 (851)
Q Consensus 224 ~---g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~--~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~ 298 (851)
. +++++++++++++++...+ +..+|+....++.+.|.++ +++++++++++.++.
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-------------------- 178 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-------------------- 178 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT--------------------
T ss_pred ccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC--------------------
Confidence 4 5666666666666666555 6666666666666666555 555555555554443
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCCh
Q 038852 299 EAMQSYKSLMERNFRMTPATCNTLLEVLLKHEK------KEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKF 372 (851)
Q Consensus 299 ~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~------~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~ 372 (851)
|...|+....++...++ ++++++.+++++..... |..+|+.+..++.+.|+.
T Consensus 179 ----------------N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~------n~SaW~y~~~ll~~~~~~ 236 (306)
T 3dra_A 179 ----------------NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ------NPSTWNYLLGIHERFDRS 236 (306)
T ss_dssp ----------------CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS------CHHHHHHHHHHHHHTTCC
T ss_pred ----------------CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC------CccHHHHHHHHHHhcCCC
Confidence 33455545555545444 67777777777775433 777787777777777774
Q ss_pred HH-HHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038852 373 SE-AIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREIST 423 (851)
Q Consensus 373 ~~-A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 423 (851)
.+ +.++++++..... .-..+...+..++++|.+.|+.++|+++++.+.+
T Consensus 237 ~~~~~~~~~~~~~~~~--~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 237 ITQLEEFSLQFVDLEK--DQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GGGGHHHHHTTEEGGG--TEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 44 4445555543210 0111555666666666666677777777766654
No 92
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.30 E-value=7e-10 Score=117.13 Aligned_cols=184 Identities=5% Similarity=0.022 Sum_probs=144.1
Q ss_pred cHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 038852 106 NLHNRVQSLIRAGDL-DAASYLARQAVFSRIRPTVFTCNAIIAAMYRAK--RYDDAVALFKYFFDQADIVPNIVSYNNLI 182 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~-~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~l~~~~~~~~~~~pd~~~~~~Li 182 (851)
.+...++++.+.|.+ ++|+.++++++... .-+..+||.-..++...| ++++++++++.++.... .+..+|+...
T Consensus 34 ~~~~~~~a~~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP--k~y~aW~~R~ 110 (306)
T 3dra_A 34 QIMGLLLALMKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE--KNYQIWNYRQ 110 (306)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT--TCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc--ccHHHHHHHH
Confidence 456677777788877 58999999999776 346778999998888888 99999999999998654 3556777776
Q ss_pred HHH----HHc---CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 183 NTY----CDE---GKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIG--EAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 183 ~~~----~~~---g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~--~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
.++ ... +++++++++++++++.++. |..+|+....++.+.|+++ +++++++++++.++. |..+|+...
T Consensus 111 ~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk--ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~ 187 (306)
T 3dra_A 111 LIIGQIMELNNNDFDPYREFDILEAMLSSDPK--NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRF 187 (306)
T ss_dssp HHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 666 666 7899999999999999877 9999999999999999988 999999999999887 899999888
Q ss_pred HHHHhcCC------HHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCC
Q 038852 254 SGFLNLGN------LEKANELFDELKQRCLVYDGVVNATFMEWWFNQGK 296 (851)
Q Consensus 254 ~~~~~~g~------~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~ 296 (851)
.++...+. ++++++.+++++..++. |...|+.+..++.+.|+
T Consensus 188 ~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 188 FLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTC
T ss_pred HHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCC
Confidence 88877765 55666666665555544 44444444444444443
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.30 E-value=5.8e-11 Score=123.32 Aligned_cols=172 Identities=11% Similarity=0.094 Sum_probs=125.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CCHHHH
Q 038852 173 PNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS-SNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG--ADSLVY 249 (851)
Q Consensus 173 pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~-~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~--pd~~~~ 249 (851)
.+...+..++..+.+.|++++|+..|+++++..+..+. ..++..++.+|...|++++|++.|+++++.... ....++
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 35677888899999999999999999999998766322 678999999999999999999999999997542 124678
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHhcCCccchhhH-----------------HHHHHHHHHcCCHHHHHHHH
Q 038852 250 NNLISGFLN--------LGNLEKANELFDELKQRCLVYDGVVN-----------------ATFMEWWFNQGKDKEAMQSY 304 (851)
Q Consensus 250 ~~Li~~~~~--------~g~~~~A~~~~~~~~~~~~~~d~~~~-----------------~~li~~~~~~g~~~~A~~l~ 304 (851)
..++.++.. .|++++|+..|+++++.... +.... ..++.+|.+.|++++|+..|
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 889999999 99999999999999987654 22222 34455566666666666666
Q ss_pred HHHHHhcCCC--CHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHHc
Q 038852 305 KSLMERNFRM--TPATCNTLLEVLLKH----------EKKEEAQALFEQMLDN 345 (851)
Q Consensus 305 ~~~~~~~~~~--~~~~~~~Li~~~~~~----------g~~~~A~~l~~~m~~~ 345 (851)
+++++..+.. ....+..++.+|... |++++|+.+|+++++.
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 6666554322 223455555555544 5666666666666653
No 94
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.27 E-value=7.1e-11 Score=126.07 Aligned_cols=138 Identities=8% Similarity=-0.019 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc-----cchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----CHH
Q 038852 248 VYNNLISGFLNLGNLEKANELFDELKQRCLV-----YDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRM-----TPA 317 (851)
Q Consensus 248 ~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~-----~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~-----~~~ 317 (851)
+|+.++.+|.+.|++++|+..|+++++.... ....++..+..+|.. |++++|++.|+++++..... ...
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 3444444444455555555555444332100 012344445555555 66666666665555432111 124
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCC
Q 038852 318 TCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPK 387 (851)
Q Consensus 318 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~ 387 (851)
+++.++.+|...|++++|+.+|++++.....-........++..++.++...|++++|+..|+++. ..+
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence 667778888888888888888888776311100000012356667777777788888888888876 443
No 95
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.27 E-value=2.7e-08 Score=113.08 Aligned_cols=371 Identities=11% Similarity=0.056 Sum_probs=207.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHH----
Q 038852 113 SLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKR-YDDAVALFKYFFDQADIVP-NIVSYNNLINTYC---- 186 (851)
Q Consensus 113 ~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~~~~~~~~~p-d~~~~~~Li~~~~---- 186 (851)
...-.++++.+..+|++++.. .|++..|...+....+.++ .+....+|+.++..-|..+ +...|...+..+.
T Consensus 23 ~~~P~~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~ 100 (493)
T 2uy1_A 23 RLYMSKDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIED 100 (493)
T ss_dssp HHHHTTCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSS
T ss_pred HHCCCCCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchh
Confidence 333446666666666666642 3466666666665555542 3445556666655444322 4455555555432
Q ss_pred HcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038852 187 DEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKAN 266 (851)
Q Consensus 187 ~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~ 266 (851)
..++++.+.++|++++.. |..--...|......- ...+...+.+++.+. .+.+..|+
T Consensus 101 ~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~~---------------------~~~y~~ar 157 (493)
T 2uy1_A 101 EQTRIEKIRNGYMRALQT-PMGSLSELWKDFENFE-LELNKITGKKIVGDT---------------------LPIFQSSF 157 (493)
T ss_dssp HHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHHHH-HHHCHHHHHHHHHHH---------------------HHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHH-HHhccccHHHHHHHH---------------------hHHHHHHH
Confidence 234556666666666652 2211111222221111 111111122221111 12334444
Q ss_pred HHHHHHHhcCCccchhhHHHHHHHHHHc--CC-----HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 038852 267 ELFDELKQRCLVYDGVVNATFMEWWFNQ--GK-----DKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALF 339 (851)
Q Consensus 267 ~~~~~~~~~~~~~d~~~~~~li~~~~~~--g~-----~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~ 339 (851)
.+|+++...-...+...|..++..-... |- .+.+..+|++++.... .+...|...+..+...|+.++|.++|
T Consensus 158 ~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~ 236 (493)
T 2uy1_A 158 QRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVV 236 (493)
T ss_dssp HHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4444443211001233455544443221 11 3456778888887643 45678888888888999999999999
Q ss_pred HHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCC-----CCCccCHHHHHHHHHHHHhcCCHHHH
Q 038852 340 EQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKS-----KPFAMDVAGYNNIIARYCENEMLEEA 414 (851)
Q Consensus 340 ~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~d~~~~~~li~~~~~~g~~~~A 414 (851)
++++.. |. +...+.. |....+.++..+.+......... .........|...+..+.+.++++.|
T Consensus 237 erAi~~---P~----~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~A 305 (493)
T 2uy1_A 237 ERGIEM---SD----GMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELF 305 (493)
T ss_dssp HHHHHH---CC----SSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHhC---CC----cHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHH
Confidence 999986 43 3333332 22222222221111111100000 00011235677788888788899999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 038852 415 EKLLREISTKSLSPDVTTFRTLIDAYLKVE-RIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGE 493 (851)
Q Consensus 415 ~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~ 493 (851)
..+|+++ ... ..+..+|...+..-...+ +.+.|..+|+.+++.... ...++...++.....|+.+.|..+|+++.+
T Consensus 306 R~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~k 382 (493)
T 2uy1_A 306 RKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLEK 382 (493)
T ss_dssp HHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSCC
T ss_pred HHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999 321 234555654443333334 699999999999986533 233444467777889999999999999842
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038852 494 KDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMK 528 (851)
Q Consensus 494 ~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~ 528 (851)
....|...+..-...|+.+.+.++++++.+
T Consensus 383 -----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 383 -----TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp -----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 567888888877888999999999998874
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.24 E-value=2e-10 Score=115.01 Aligned_cols=115 Identities=14% Similarity=0.117 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHH----------------HHHHHHHcCChHHHHHHHHHHHH
Q 038852 140 FTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNN----------------LINTYCDEGKVDEGMNVFRRIIE 203 (851)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~----------------Li~~~~~~g~~~~A~~l~~~~~~ 203 (851)
..+...+..+...|++++|+..|+++++..+ .+...|.. ++.+|.+.|++++|+..|+++++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNI--DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH--HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444455556667777777777777665422 12334444 55555555555555555555555
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038852 204 TAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL 259 (851)
Q Consensus 204 ~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~ 259 (851)
.+|. +..+|..++.+|...|++++|++.|+++++.... +..+|..++.+|...
T Consensus 83 ~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 83 KAPN--NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLT 135 (208)
T ss_dssp HCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH
Confidence 5444 4445555555555555555555555555554433 444555555554433
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.23 E-value=4.6e-10 Score=112.28 Aligned_cols=164 Identities=15% Similarity=0.119 Sum_probs=104.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH----------------HHHHHHHcCChhHHHHHHHHHHHcCC
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNA----------------IIAAMYRAKRYDDAVALFKYFFDQAD 170 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~l~~~~~~~~~ 170 (851)
+......++..|++++|+..|++++.... .+...|.. +..+|.+.|++++|+..|+++++..+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 45566677777777777777777775542 23445555 77777777777777777777776543
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCCHHH
Q 038852 171 IVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGR--IGEAVDLLRDMLSRQLGADSLV 248 (851)
Q Consensus 171 ~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~--~~~A~~l~~~m~~~g~~pd~~~ 248 (851)
.+...|..++.+|...|++++|+..|+++++.+|. +..+|..++.+|...|+ .+.+...|+.+.. ..+....
T Consensus 86 --~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a 159 (208)
T 3urz_A 86 --NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD--NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYA 159 (208)
T ss_dssp --TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHH
T ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHH
Confidence 35667777777777777777777777777777666 66677777777665543 3444555555432 1222234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038852 249 YNNLISGFLNLGNLEKANELFDELKQRCL 277 (851)
Q Consensus 249 ~~~Li~~~~~~g~~~~A~~~~~~~~~~~~ 277 (851)
+..++.++...|++++|+..|+++++..+
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 44455566666777777777777666543
No 98
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.23 E-value=2.5e-10 Score=121.79 Aligned_cols=229 Identities=13% Similarity=0.098 Sum_probs=155.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 038852 117 AGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYR-AKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGM 195 (851)
Q Consensus 117 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~ 195 (851)
.|++++|..+++++.+.... . +.+ .+++++|..+|+++ +.+|...|++++|+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHH
Confidence 56788888888877654321 1 111 47788887777654 34577788888888
Q ss_pred HHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-C----HHHHHHHHHHHHhcCCHHHHH
Q 038852 196 NVFRRIIETAPVGPS----SNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGA-D----SLVYNNLISGFLNLGNLEKAN 266 (851)
Q Consensus 196 ~l~~~~~~~~~~~p~----~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p-d----~~~~~~Li~~~~~~g~~~~A~ 266 (851)
+.|.++++.....-+ ..+|+.++.+|...|++++|++.|+++++..... + ..++..++.+|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 888887765321112 3478888888888999999999988877642110 1 3577788888888 9999999
Q ss_pred HHHHHHHhcCCcc-----chhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHhCCCHHHHH
Q 038852 267 ELFDELKQRCLVY-----DGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMT-----PATCNTLLEVLLKHEKKEEAQ 336 (851)
Q Consensus 267 ~~~~~~~~~~~~~-----d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~-----~~~~~~Li~~~~~~g~~~~A~ 336 (851)
+.|+++++..... ...++..++.+|.+.|++++|+++|+++++.....+ ..++..++.++...|++++|+
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999887643221 246778888999999999999999999887532211 236677788888889999999
Q ss_pred HHHHHHHHcCCCCCCCcc-CHHHHHHHHHHHHHcCChHHHHH
Q 038852 337 ALFEQMLDNHQPPNIQAV-NSDTFNIMVNECFKHGKFSEAIE 377 (851)
Q Consensus 337 ~l~~~m~~~~~~p~~~~~-~~~~~~~L~~~~~~~g~~~~A~~ 377 (851)
..|++++ . .|+.... .......++.+| ..|+.+.+.+
T Consensus 216 ~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999998 4 3322110 112334444444 5666555444
No 99
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.22 E-value=1.3e-09 Score=110.50 Aligned_cols=189 Identities=10% Similarity=0.091 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH-HHHHHHH
Q 038852 141 TCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN-IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSS-NTYRHLT 218 (851)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd-~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~-~~~~~Li 218 (851)
.+..++..+.+.|++++|+..|+++++..+..+. ...+..++.+|.+.|++++|+..|+++++..|..+.. .++..++
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 3344444555555555555555555544322221 2345555555555555555555555555555443332 2333344
Q ss_pred HHHH------------------HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccc
Q 038852 219 KGFV------------------DAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYD 280 (851)
Q Consensus 219 ~~~~------------------~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d 280 (851)
.++. ..|++++|+..|+++++..+. +..++..+..... +...+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~----------~~~~~-------- 146 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVF----------LKDRL-------- 146 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHH----------HHHHH--------
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHH----------HHHHH--------
Confidence 4443 356777777777777766433 2222221111000 00000
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 038852 281 GVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMT--PATCNTLLEVLLKHEKKEEAQALFEQMLDNHQP 348 (851)
Q Consensus 281 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~--~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~ 348 (851)
......++..|.+.|++++|+..|+++++..+... ...+..++.+|.+.|++++|++.++.+...+..
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 01123566778889999999999999988765432 256778899999999999999999988876443
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.20 E-value=2e-10 Score=136.63 Aligned_cols=185 Identities=11% Similarity=0.012 Sum_probs=147.8
Q ss_pred HHcCChHHHHHHHHHHH--------HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038852 186 CDEGKVDEGMNVFRRII--------ETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFL 257 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~--------~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~ 257 (851)
...|++++|++.|++++ +.++. +...|..++.+|...|++++|++.|+++++.+.. +...|..++.+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE--SVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT--CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc--chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHH
Confidence 66789999999999988 55544 6678888899999999999999999999988666 7888889999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 038852 258 NLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQA 337 (851)
Q Consensus 258 ~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~ 337 (851)
..|++++|++.|+++++.+.. +...+..++.+|.+.|++++ ++.|+++++.+.. +...|..++.+|.+.|++++|++
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999888766 67788888889999999999 9999999888753 55678889999999999999999
Q ss_pred HHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCC--------hHHHHHHHHHh
Q 038852 338 LFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGK--------FSEAIETFKKA 382 (851)
Q Consensus 338 l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~--------~~~A~~~~~~~ 382 (851)
.|+++++. .|+ +..++..++.++...++ +++|.+.+..+
T Consensus 556 ~~~~al~l--~P~----~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 556 TLDEVPPT--SRH----FTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHTSCTT--STT----HHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHhhccc--Ccc----cHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 99988764 343 57788888888766554 45555555444
No 101
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.20 E-value=1e-09 Score=99.76 Aligned_cols=129 Identities=19% Similarity=0.398 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038852 141 TCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKG 220 (851)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~ 220 (851)
.|..++..+...|++++|+++|+++++... .+..+|..++.++...|++++|+.+|+++++..+. +..+|..++.+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP--RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--SAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC--cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC--chHHHHHHHHH
Confidence 344455555555555555555555544321 23444555555555555555555555555554433 44455555555
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038852 221 FVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQ 274 (851)
Q Consensus 221 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~ 274 (851)
+...|++++|+++|+++++.... +..++..++.+|.+.|++++|.++|+++++
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 55555555555555555544322 344444555555555555555555554443
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.19 E-value=1.6e-10 Score=137.34 Aligned_cols=174 Identities=9% Similarity=-0.038 Sum_probs=137.2
Q ss_pred HHcCChhHHHHHHHHHH--------HcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038852 150 YRAKRYDDAVALFKYFF--------DQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGF 221 (851)
Q Consensus 150 ~~~g~~~~A~~l~~~~~--------~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~ 221 (851)
...|++++|++.|++++ +.. ..+...|..++.+|...|++++|++.|+++++.++. +..+|..++.+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW--RWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC--CHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc--hHHHHHHHHHHH
Confidence 56788888888888887 322 235667888888888889999999999888888766 778888888888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHH
Q 038852 222 VDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAM 301 (851)
Q Consensus 222 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~ 301 (851)
...|++++|++.|+++++.... +...|..++.+|.+.|++++ ++.|+++++.+.. +...+..++.+|.+.|++++|+
T Consensus 478 ~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHH
Confidence 8889999999999988887665 67788888888888899888 8888888887765 6778888888888999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhCCC
Q 038852 302 QSYKSLMERNFRMTPATCNTLLEVLLKHEK 331 (851)
Q Consensus 302 ~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~ 331 (851)
+.|+++++.+.. +...|..++.++...++
T Consensus 555 ~~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 998888876542 34566677777766554
No 103
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.19 E-value=1.2e-09 Score=99.22 Aligned_cols=131 Identities=20% Similarity=0.369 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038852 177 SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGF 256 (851)
Q Consensus 177 ~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~ 256 (851)
.|..++..|...|++++|+++|+++++..+. +..+|..++.++...|++++|+++|+++++.+.. +..++..++.++
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR--SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc--chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHH
Confidence 4566677777777777777777777766544 5666777777777777777777777777766443 566677777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 038852 257 LNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERN 311 (851)
Q Consensus 257 ~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~ 311 (851)
...|++++|+++|+++.+.... +..++..++.++.+.|++++|+++|+++++.+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 7777777777777777665443 45566667777777777777777777776654
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.19 E-value=1.8e-09 Score=109.28 Aligned_cols=194 Identities=10% Similarity=0.024 Sum_probs=141.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH--HHHH
Q 038852 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS-SNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADS--LVYN 250 (851)
Q Consensus 174 d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~-~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~~~~ 250 (851)
+...+..++..+...|++++|+..|+++++..+..+. ..++..++.+|.+.|++++|++.|+++++....-.. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4456777888899999999999999999998766443 468889999999999999999999999987654221 3555
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 038852 251 NLISGFLN------------------LGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNF 312 (851)
Q Consensus 251 ~Li~~~~~------------------~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~ 312 (851)
.++.++.. .|++++|+..|+++++.... +...+..+..+ ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHHH----
Confidence 66666654 46778888888887776543 22222211110 00001100
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCC
Q 038852 313 RMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSK 389 (851)
Q Consensus 313 ~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~ 389 (851)
.....++..|.+.|++++|+..|+++++...... ....++..++.+|.+.|++++|++.|+.+....+..
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQ---ATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCC---ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 1223578889999999999999999998643321 157899999999999999999999999987766554
No 105
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.17 E-value=1.6e-08 Score=107.80 Aligned_cols=194 Identities=5% Similarity=0.004 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038852 140 FTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEG-KVDEGMNVFRRIIETAPVGPSSNTYRHLT 218 (851)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g-~~~~A~~l~~~~~~~~~~~p~~~~~~~Li 218 (851)
.+++.+...+.+.+..++|++++++++..+. .+..+|+....++...| ++++++++++.++..++. +..+|+...
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP--~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK--ny~aW~hR~ 130 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNP--AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK--SYQVWHHRL 130 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC--cHHHHHHHH
Confidence 3444444444445555788888888877543 35667888777777788 488888888888887766 777888887
Q ss_pred HHHHHc-C-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCC
Q 038852 219 KGFVDA-G-RIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGK 296 (851)
Q Consensus 219 ~~~~~~-g-~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~ 296 (851)
.++... + ++++++++++++++...+ |..+|+....++.+.|.++.+ + ...
T Consensus 131 wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~--------------~-------------~~~ 182 (349)
T 3q7a_A 131 LLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRI--------------S-------------EAQ 182 (349)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCC--------------C-------------HHH
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccccc--------------c-------------hhh
Confidence 777776 6 778888888888887666 777777766666555544300 0 001
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHc
Q 038852 297 DKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEK-------KEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKH 369 (851)
Q Consensus 297 ~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~-------~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~ 369 (851)
+++++++++++++.++ -|...|+....++.+.++ ++++++++++++..... |..+|+.+...+.+.
T Consensus 183 ~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~------n~SaW~Ylr~Ll~~~ 255 (349)
T 3q7a_A 183 WGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH------NVSAWNYLRGFLKHF 255 (349)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhc
Confidence 2355555566655554 244667666666666665 67888888888875433 788888877777776
Q ss_pred CCh
Q 038852 370 GKF 372 (851)
Q Consensus 370 g~~ 372 (851)
|+.
T Consensus 256 ~~~ 258 (349)
T 3q7a_A 256 SLP 258 (349)
T ss_dssp TCC
T ss_pred CCC
Confidence 654
No 106
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.16 E-value=8.6e-11 Score=110.93 Aligned_cols=144 Identities=8% Similarity=-0.052 Sum_probs=88.7
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 038852 146 IAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAG 225 (851)
Q Consensus 146 i~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g 225 (851)
+.++...|++++|++.|...+... ..+...+..|+.+|.+.|++++|++.|+++++.++. +..+|..++.+|...|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER--DPKAHRFLGLLYELEE 79 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTT
T ss_pred HHHHHHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcC
Confidence 344445567777777776664321 012334556677777777777777777777777655 6667777777777777
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCccchhhHHHHHHHHHHcC
Q 038852 226 RIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANEL-FDELKQRCLVYDGVVNATFMEWWFNQG 295 (851)
Q Consensus 226 ~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~-~~~~~~~~~~~d~~~~~~li~~~~~~g 295 (851)
++++|+..|+++++.... +..+|..++.+|.+.|++++|.+. ++++++..+. +..++......+...|
T Consensus 80 ~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred chHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 777777777777776554 666777777777777776655443 4666665544 4445554444444444
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.16 E-value=3.6e-09 Score=106.08 Aligned_cols=176 Identities=9% Similarity=0.003 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----CHHHHHH
Q 038852 157 DAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAG----RIGEAVD 232 (851)
Q Consensus 157 ~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g----~~~~A~~ 232 (851)
+|+++|++..+. -+...+..|..+|...+++++|+++|+++.+.+ +..++..|..+|.. + ++++|++
T Consensus 4 eA~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 4 EPGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp CTTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred hHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 344555555432 245555555555655666666666666655543 44555555555555 4 5666666
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCc-cchhhHHHHHHHHHH----cCCHHHHHHH
Q 038852 233 LLRDMLSRQLGADSLVYNNLISGFLN----LGNLEKANELFDELKQRCLV-YDGVVNATFMEWWFN----QGKDKEAMQS 303 (851)
Q Consensus 233 l~~~m~~~g~~pd~~~~~~Li~~~~~----~g~~~~A~~~~~~~~~~~~~-~d~~~~~~li~~~~~----~g~~~~A~~l 303 (851)
+|+++.+.| +...+..|..+|.. .+++++|+++|++..+.+.. .+...+..|..+|.. .+++++|+++
T Consensus 75 ~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 75 LAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 666665543 44555556655555 55666666666666555431 014455555555555 5566666666
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhC-C-----CHHHHHHHHHHHHHcC
Q 038852 304 YKSLMERNFRMTPATCNTLLEVLLKH-E-----KKEEAQALFEQMLDNH 346 (851)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~Li~~~~~~-g-----~~~~A~~l~~~m~~~~ 346 (851)
|++..+.+ .+...+..|..+|... | ++++|+.+|+++.+.|
T Consensus 152 ~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 152 FKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 66665551 1223555566666543 2 6777777777776654
No 108
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.16 E-value=4.7e-09 Score=109.67 Aligned_cols=251 Identities=12% Similarity=0.055 Sum_probs=178.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 038852 110 RVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEG 189 (851)
Q Consensus 110 ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g 189 (851)
-|+...-.|.+..++.-..++ ...........+.++|...|+++... .-.|....+..+... .. +
T Consensus 19 ~ikn~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~~----------~~~~~~~a~~~la~~-~~-~ 83 (310)
T 3mv2_B 19 NIKQNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQD----------PTSKLGKVLDLYVQF-LD-T 83 (310)
T ss_dssp HHHHHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCCC----------SSSTTHHHHHHHHHH-HT-T
T ss_pred HHHHHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccCC----------CCCHHHHHHHHHHHH-hc-c
Confidence 467777889999988744332 22223344445668888888877421 122444444444443 33 2
Q ss_pred ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038852 190 KVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQL-GADSLVYNNLISGFLNLGNLEKANEL 268 (851)
Q Consensus 190 ~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~~~~~Li~~~~~~g~~~~A~~~ 268 (851)
+ |+..|++.++.+ .++..++..++.++...|++++|++++.+.+..+. .-+...+..++.+|.+.|+.+.|.++
T Consensus 84 ~---a~~~l~~l~~~~--~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~ 158 (310)
T 3mv2_B 84 K---NIEELENLLKDK--QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTI 158 (310)
T ss_dssp T---CCHHHHHTTTTS--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred c---HHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 2 788888877653 33566777899999999999999999999988764 22678888999999999999999999
Q ss_pred HHHHHhcCC---ccchhhHHHHHHH--HHHcC--CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 038852 269 FDELKQRCL---VYDGVVNATFMEW--WFNQG--KDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQ 341 (851)
Q Consensus 269 ~~~~~~~~~---~~d~~~~~~li~~--~~~~g--~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~ 341 (851)
+++|.+... ..+..+...|+.+ ....| ++.+|..+|+++.+... +..+...++.++...|++++|.++++.
T Consensus 159 l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p--~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 159 FDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFP--TWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSC--SHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCC--CcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999987654 1134555556555 33334 89999999999876643 322333445589999999999999997
Q ss_pred HHHcC-----C---CCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCC
Q 038852 342 MLDNH-----Q---PPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKS 388 (851)
Q Consensus 342 m~~~~-----~---~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~ 388 (851)
+++.. . .|+ +..++..++.++...|+ +|.+++.++....+.
T Consensus 237 l~~~~p~~~~k~~~~p~----~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLY----KPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HHSHHHHTTTCHHHHSS----HHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred HHHhcccccccccCCCC----CHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 76531 0 243 78888888888888887 889999999887666
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.15 E-value=5.5e-10 Score=108.37 Aligned_cols=164 Identities=15% Similarity=0.140 Sum_probs=117.9
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT 184 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~ 184 (851)
..+......+...|++++|+..|++++... +.+...+..+..++.+.|++++|+..|+++++..+ +...+..+...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p---~~~~~~~~~~~ 82 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ---DNSYKSLIAKL 82 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC---ChHHHHHHHHH
Confidence 346677888888888888888888877654 34677788888888888888888888888765433 43333332222
Q ss_pred -HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCH
Q 038852 185 -YCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGA-DSLVYNNLISGFLNLGNL 262 (851)
Q Consensus 185 -~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~~~~Li~~~~~~g~~ 262 (851)
+...++..+|+..|+++++.+|. +...+..++.++...|++++|++.|+++++..... +...+..++.+|...|+.
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPD--NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HHHhhcccchHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence 12223334578888888887766 67788888888888888888888888888775442 345777788888888888
Q ss_pred HHHHHHHHHHHh
Q 038852 263 EKANELFDELKQ 274 (851)
Q Consensus 263 ~~A~~~~~~~~~ 274 (851)
++|...|++.+.
T Consensus 161 ~~A~~~y~~al~ 172 (176)
T 2r5s_A 161 NAIASKYRRQLY 172 (176)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 888888877654
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.14 E-value=2.8e-09 Score=106.90 Aligned_cols=177 Identities=13% Similarity=0.013 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC----ChHHHHHH
Q 038852 122 AASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEG----KVDEGMNV 197 (851)
Q Consensus 122 ~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g----~~~~A~~l 197 (851)
+|+..|+++...+ +...+..|...|...+++++|+++|+++.+. -+...+..|..+|.. + ++++|+++
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----g~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----GDGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TCHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 4677888887664 7889999999999999999999999999764 377889999998888 7 89999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHh----cCCHHHHHHH
Q 038852 198 FRRIIETAPVGPSSNTYRHLTKGFVD----AGRIGEAVDLLRDMLSRQLG-ADSLVYNNLISGFLN----LGNLEKANEL 268 (851)
Q Consensus 198 ~~~~~~~~~~~p~~~~~~~Li~~~~~----~g~~~~A~~l~~~m~~~g~~-pd~~~~~~Li~~~~~----~g~~~~A~~~ 268 (851)
|+++.+.+ +..++..|..+|.. .+++++|+++|+++.+.+.. -+...+..|..+|.. .+++++|+++
T Consensus 76 ~~~A~~~g----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 76 AEKAVEAG----SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHTT----CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHCC----CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 99998764 77899999999987 88999999999999988642 026888999999998 8899999999
Q ss_pred HHHHHhcCCccchhhHHHHHHHHHHc-C-----CHHHHHHHHHHHHHhcC
Q 038852 269 FDELKQRCLVYDGVVNATFMEWWFNQ-G-----KDKEAMQSYKSLMERNF 312 (851)
Q Consensus 269 ~~~~~~~~~~~d~~~~~~li~~~~~~-g-----~~~~A~~l~~~~~~~~~ 312 (851)
|++..+.+ .+...+..|..+|... | ++++|+++|+...+.|.
T Consensus 152 ~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 152 FKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99998872 2445677788888764 3 89999999999998875
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.14 E-value=3.7e-10 Score=109.59 Aligned_cols=56 Identities=11% Similarity=0.207 Sum_probs=23.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 038852 182 INTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLS 239 (851)
Q Consensus 182 i~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~ 239 (851)
+..+...|++++|+..|+++++.+|. +...|..++.++...|++++|+++|+++++
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDELQS--RGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHHHT--SHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 33344444444444444444443333 333444444444444444444444444433
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.11 E-value=1.4e-09 Score=114.75 Aligned_cols=165 Identities=15% Similarity=0.105 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038852 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHL 217 (851)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~L 217 (851)
+...+..+...+.+.|++++|+.+|+++++..+ .+...+..|+.+|...|++++|+.+|+++++.++. +...+..+
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~--~~~~~~~~ 191 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSN--QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD--TRYQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS--HHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc--hHHHHHHH
Confidence 334445555555566666666666666555432 23455555666666666666666666655544331 22222222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcc-chhhHHHHHHHHHHcCC
Q 038852 218 TKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVY-DGVVNATFMEWWFNQGK 296 (851)
Q Consensus 218 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~-d~~~~~~li~~~~~~g~ 296 (851)
...+...++.++|++.|+++++.... +...+..++.+|...|++++|++.|+++++..... +...+..++.+|...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 33344555555556666665555444 55555566666666666666666666655554331 24445555555555555
Q ss_pred HHHHHHHHHHH
Q 038852 297 DKEAMQSYKSL 307 (851)
Q Consensus 297 ~~~A~~l~~~~ 307 (851)
.++|...|++.
T Consensus 271 ~~~a~~~~r~a 281 (287)
T 3qou_A 271 GDALASXYRRQ 281 (287)
T ss_dssp TCHHHHHHHHH
T ss_pred CCcHHHHHHHH
Confidence 55555555543
No 113
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.11 E-value=1.7e-10 Score=108.90 Aligned_cols=145 Identities=12% Similarity=-0.044 Sum_probs=96.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 038852 181 LINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLG 260 (851)
Q Consensus 181 Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g 260 (851)
|+.++...|++++|++.|.+++...+. +...+..|+.+|.+.|++++|++.|+++++.... +..+|..++.+|.+.|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~--~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQ--KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHH--HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 445556667778888887777554332 3445667778888888888888888888877655 7777888888888888
Q ss_pred CHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHhCC
Q 038852 261 NLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQS-YKSLMERNFRMTPATCNTLLEVLLKHE 330 (851)
Q Consensus 261 ~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l-~~~~~~~~~~~~~~~~~~Li~~~~~~g 330 (851)
++++|+..|+++++.+.. +..++..++.+|.+.|++++|.+. ++++++.++ .+..+|......+...|
T Consensus 80 ~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCC
T ss_pred chHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhC
Confidence 888888888887776655 566666666677777766655544 366666554 24455555555555544
No 114
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.11 E-value=1.9e-08 Score=107.16 Aligned_cols=180 Identities=8% Similarity=-0.014 Sum_probs=138.7
Q ss_pred cHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 038852 106 NLHNRVQSLIRAGDL-DAASYLARQAVFSRIRPTVFTCNAIIAAMYRAK-RYDDAVALFKYFFDQADIVPNIVSYNNLIN 183 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~-~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~ 183 (851)
.+...++++.+.+.+ ++|+.++++++... ..+..+|+.-..++...| ++++++++++.++.... .+..+|+....
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP--Kny~aW~hR~w 131 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL--KSYQVWHHRLL 131 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC--CcHHHHHHHHH
Confidence 445556666666655 68999999999876 346778999888888888 59999999999988643 57788999888
Q ss_pred HHHHc-C-ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 184 TYCDE-G-KVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIG--------EAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 184 ~~~~~-g-~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~--------~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
++... + ++++++++++++++.++. |..+|+....++.+.|.++ +++++++++++.++. |..+|+...
T Consensus 132 lL~~l~~~~~~~EL~~~~k~L~~dpk--Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~ 208 (349)
T 3q7a_A 132 LLDRISPQDPVSEIEYIHGSLLPDPK--NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRW 208 (349)
T ss_dssp HHHHHCCSCCHHHHHHHHHHTSSCTT--CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 88887 7 899999999999998766 8889998888887777766 899999999998777 888898888
Q ss_pred HHHHhcCC-------HHHHHHHHHHHHhcCCccchhhHHHHHHHHH
Q 038852 254 SGFLNLGN-------LEKANELFDELKQRCLVYDGVVNATFMEWWF 292 (851)
Q Consensus 254 ~~~~~~g~-------~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~ 292 (851)
.++.+.+. ++++++++++++...+. |...|+.+...+.
T Consensus 209 ~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~ 253 (349)
T 3q7a_A 209 YLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLK 253 (349)
T ss_dssp HHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 88877775 45566666665555444 4444444333333
No 115
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.10 E-value=2.6e-09 Score=112.62 Aligned_cols=167 Identities=9% Similarity=0.054 Sum_probs=111.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 174 d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
+...+..++..+...|++++|+.+|+++++.+|. +..++..|+.+|...|++++|+++|+++.+.... +......+.
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ--NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-TRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS--CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-HHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc--chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-hHHHHHHHH
Confidence 4456667777777888888888888888877766 6677777888888888888888888877765432 222333333
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCCH
Q 038852 254 SGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRM-TPATCNTLLEVLLKHEKK 332 (851)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~-~~~~~~~Li~~~~~~g~~ 332 (851)
..+...++.++|++.|+++++.... +...+..++.+|...|++++|++.|+++++.++.. +...+..|+.+|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 3455666777777777777776654 56666667777777777777777777776665432 234566666666666666
Q ss_pred HHHHHHHHHHHH
Q 038852 333 EEAQALFEQMLD 344 (851)
Q Consensus 333 ~~A~~l~~~m~~ 344 (851)
++|...|++.+.
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 666666666543
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.07 E-value=5.2e-09 Score=121.84 Aligned_cols=156 Identities=12% Similarity=0.015 Sum_probs=123.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 038852 117 AGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMN 196 (851)
Q Consensus 117 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~ 196 (851)
.|++++|+..+++++... ..+...|..+...|.+.|++++|++.|+++++... .+..+|..++.+|...|++++|++
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP--GHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST--TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478899999999988654 34678899999999999999999999999987543 467889999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 038852 197 VFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL---GNLEKANELFDELK 273 (851)
Q Consensus 197 l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~---g~~~~A~~~~~~~~ 273 (851)
.|+++++.++. +...|..++.+|...|++++|++.|+++++.... +..++..++.++... |++++|.+.|++++
T Consensus 79 ~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 79 LLQQASDAAPE--HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 99999998776 7889999999999999999999999999998665 788999999999999 99999999999999
Q ss_pred hcCCc
Q 038852 274 QRCLV 278 (851)
Q Consensus 274 ~~~~~ 278 (851)
+.+..
T Consensus 156 ~~~p~ 160 (568)
T 2vsy_A 156 AQGVG 160 (568)
T ss_dssp HHTCC
T ss_pred hcCCc
Confidence 87654
No 117
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.07 E-value=1.3e-08 Score=106.38 Aligned_cols=269 Identities=11% Similarity=0.081 Sum_probs=179.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCH
Q 038852 253 ISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKK 332 (851)
Q Consensus 253 i~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~ 332 (851)
++-..-.|++..++.-..+ .....+......+.++|...|+++... ...+....+..+... ...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~---~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~-~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEK---FSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQF-LDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHT---SSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHH-HTTT--
T ss_pred HHHHHHhhHHHHHHHHHHh---cCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHH-hccc--
Confidence 4556667999998874333 222223345555667788888876421 222333344434333 3322
Q ss_pred HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHH
Q 038852 333 EEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLE 412 (851)
Q Consensus 333 ~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~ 412 (851)
|+..|++.+..+ .+ +..++..++.++...|++++|++++.+.+...+... +...+..++.++.+.|+.+
T Consensus 85 --a~~~l~~l~~~~-~~-----~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~---~lea~~l~vqi~L~~~r~d 153 (310)
T 3mv2_B 85 --NIEELENLLKDK-QN-----SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEG---TTELLLLAIEVALLNNNVS 153 (310)
T ss_dssp --CCHHHHHTTTTS-CC-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTT---HHHHHHHHHHHHHHTTCHH
T ss_pred --HHHHHHHHHhcC-CC-----CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcC---cHHHHHHHHHHHHHCCCHH
Confidence 788888877654 22 456667899999999999999999999865543112 7888889999999999999
Q ss_pred HHHHHHHHHHhCCCCC-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHH
Q 038852 413 EAEKLLREISTKSLSP-----DVTTFRTLIDA--YLKVE--RIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAE 483 (851)
Q Consensus 413 ~A~~l~~~m~~~g~~p-----d~~~~~~Ll~~--~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~ 483 (851)
.|.+++++|.+. .+ +..+...|+.+ ....| ++.+|..+|+++.+... +......++.++...|++++
T Consensus 154 ~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p--~~~~~~lLln~~~~~g~~~e 229 (310)
T 3mv2_B 154 TASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFP--TWKTQLGLLNLHLQQRNIAE 229 (310)
T ss_dssp HHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSC--SHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCC--CcccHHHHHHHHHHcCCHHH
Confidence 999999999865 45 25555666655 33344 89999999999877543 21222235558999999999
Q ss_pred HHHHHHHHhhCC-----C----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038852 484 CAPILTKMGEKD-----P----KPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEI 554 (851)
Q Consensus 484 A~~ll~~m~~~~-----~----~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA 554 (851)
|.++++.+.+.. . .-|..++..+|..+...|+ +|.++++++.+.. +..+.+. ++++.
T Consensus 230 Ae~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~-P~hp~i~-----------d~~~k 295 (310)
T 3mv2_B 230 AQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD-HEHAFIK-----------HHQEI 295 (310)
T ss_dssp HHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT-CCCHHHH-----------HHHHH
T ss_pred HHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC-CCChHHH-----------HHHHH
Confidence 999999776531 0 2256677677777777787 8899999998754 2222222 34455
Q ss_pred HHHHHhhhhcC
Q 038852 555 ERVLNADRWGY 565 (851)
Q Consensus 555 ~~ll~~~~~~~ 565 (851)
...|+++..+|
T Consensus 296 ~~~Fd~~~~ky 306 (310)
T 3mv2_B 296 DAKFDELVRKY 306 (310)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 66677766655
No 118
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.06 E-value=3.2e-09 Score=123.64 Aligned_cols=156 Identities=12% Similarity=0.083 Sum_probs=124.6
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 038852 152 AKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAV 231 (851)
Q Consensus 152 ~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~ 231 (851)
.|++++|++.|+++++... .+...|..++.+|...|++++|++.|+++++.++. +..+|..++.+|...|++++|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP--QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG--HPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT--CHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHH
Confidence 4789999999999876532 35788999999999999999999999999998766 7889999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHc---CCHHHHHHHHHHHH
Q 038852 232 DLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQ---GKDKEAMQSYKSLM 308 (851)
Q Consensus 232 ~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~---g~~~~A~~l~~~~~ 308 (851)
+.|+++++.... +...+..++.+|.+.|++++|++.|+++++.+.. +...+..++.++... |++++|++.|++++
T Consensus 78 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 999999998665 7889999999999999999999999999988765 678888999999999 99999999999999
Q ss_pred HhcCC
Q 038852 309 ERNFR 313 (851)
Q Consensus 309 ~~~~~ 313 (851)
+.+..
T Consensus 156 ~~~p~ 160 (568)
T 2vsy_A 156 AQGVG 160 (568)
T ss_dssp HHTCC
T ss_pred hcCCc
Confidence 88754
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.00 E-value=1.8e-08 Score=100.50 Aligned_cols=131 Identities=15% Similarity=0.065 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038852 141 TCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKG 220 (851)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~ 220 (851)
.+..++..+...|++++|++.|++++ .++..+|..++.+|...|++++|++.|+++++.++. +..+|..++.+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~lg~~ 80 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH--LAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--chHHHHHHHHH
Confidence 34556667777888888888887763 346777888888888888888888888888877655 67778888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCC---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc
Q 038852 221 FVDAGRIGEAVDLLRDMLSRQLGA---------------DSLVYNNLISGFLNLGNLEKANELFDELKQRCLV 278 (851)
Q Consensus 221 ~~~~g~~~~A~~l~~~m~~~g~~p---------------d~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~ 278 (851)
|...|++++|++.|+++++..... +..++..++.+|.+.|++++|++.|+++++....
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 888888888888888887754331 1267777888888888888888888887776544
No 120
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.00 E-value=2.4e-07 Score=98.20 Aligned_cols=99 Identities=5% Similarity=0.033 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHH
Q 038852 155 YDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEG--KVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGR-IGEAV 231 (851)
Q Consensus 155 ~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g--~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~-~~~A~ 231 (851)
+++++.+++.++.... .+..+|+.-..++...+ ++++++++++++++.++. |..+|+....++...|. +++++
T Consensus 90 l~~EL~~~~~~L~~~P--Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr--Ny~AW~~R~~vl~~l~~~~~eel 165 (331)
T 3dss_A 90 VKAELGFLESCLRVNP--KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER--NFHCWDYRRFVAAQAAVAPAEEL 165 (331)
T ss_dssp HHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhCC--CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCcCHHHHH
Confidence 3444444444444322 23444444444444444 244555555555554433 44444444444444444 34555
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038852 232 DLLRDMLSRQLGADSLVYNNLISGFLN 258 (851)
Q Consensus 232 ~l~~~m~~~g~~pd~~~~~~Li~~~~~ 258 (851)
+.++++++.++. |..+|+....++.+
T Consensus 166 ~~~~~~I~~~p~-N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 166 AFTDSLITRNFS-NYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHHHHHHHCSC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 555555544444 44444444444433
No 121
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.00 E-value=2.8e-07 Score=97.75 Aligned_cols=224 Identities=8% Similarity=-0.050 Sum_probs=162.1
Q ss_pred HHcCChh-HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038852 150 YRAKRYD-DAVALFKYFFDQADIVPNIVSYNNLINTYCDEGK----------VDEGMNVFRRIIETAPVGPSSNTYRHLT 218 (851)
Q Consensus 150 ~~~g~~~-~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~----------~~~A~~l~~~~~~~~~~~p~~~~~~~Li 218 (851)
.+.|.++ +|+++++.++..++ -+..+|+.-..++...++ +++++.+++.++..++. +..+|+...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP--~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK--ny~aW~hR~ 115 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANP--DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK--SYGTWHHRC 115 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCc--hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC--CHHHHHHHH
Confidence 3566665 79999999987533 345667776666655554 68899999999998876 888999998
Q ss_pred HHHHHcC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCccchhhHHHHHHHHHHc-
Q 038852 219 KGFVDAG--RIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGN-LEKANELFDELKQRCLVYDGVVNATFMEWWFNQ- 294 (851)
Q Consensus 219 ~~~~~~g--~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~-~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~- 294 (851)
.++...+ ++++++++++++++...+ |..+|+....++...|. ++++++.++++++.++. |...|+....++.+.
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~ 193 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLH 193 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHS
T ss_pred HHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhh
Confidence 8888888 489999999999999877 88999999998888898 68999999999998877 777787777766665
Q ss_pred -------------CCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHHcCCCCC
Q 038852 295 -------------GKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKH-----------EKKEEAQALFEQMLDNHQPPN 350 (851)
Q Consensus 295 -------------g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~-----------g~~~~A~~l~~~m~~~~~~p~ 350 (851)
+.+++++++++.++..++ -|..+|+.+-..+.+. +.++++++.++++++. .|+
T Consensus 194 ~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd 270 (331)
T 3dss_A 194 PQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPE 270 (331)
T ss_dssp CCC------CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTT
T ss_pred hccccccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Ccc
Confidence 457888888888888765 4667777655555544 3467777778777774 343
Q ss_pred CCccCHHHHHHHHHHH---HHcCChHHHHHHHHHhccCC
Q 038852 351 IQAVNSDTFNIMVNEC---FKHGKFSEAIETFKKAGTHP 386 (851)
Q Consensus 351 ~~~~~~~~~~~L~~~~---~~~g~~~~A~~~~~~~~~~~ 386 (851)
+.-.+..++... ...+..+++..++.++.+.+
T Consensus 271 ----~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 271 ----NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp ----CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred ----cchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 322222222211 12445556666666665443
No 122
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.98 E-value=4.7e-09 Score=110.31 Aligned_cols=195 Identities=11% Similarity=0.042 Sum_probs=111.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 174 d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
+...+..++..+...|++++|+..|+++++.++. +...|..++.+|.+.|++++|++.|+++++.... +...+..++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL--VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 4456667777777777777777777777777655 6677777777777777777777777777776544 667777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHH
Q 038852 254 SGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKE 333 (851)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~ 333 (851)
.+|...|++++|+..|+++++.+.. +...+...+....+. .++.. +..+.......+......+... ..|+++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~ 152 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTRL--IAAERE 152 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHH
Confidence 7777777777777777777654322 110111111111110 11111 1112222222233333333322 246777
Q ss_pred HHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHc-CChHHHHHHHHHhcc
Q 038852 334 EAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKH-GKFSEAIETFKKAGT 384 (851)
Q Consensus 334 ~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~-g~~~~A~~~~~~~~~ 384 (851)
+|++.++++++. .|+ +......+...+.+. +.+++|.++|.++.+
T Consensus 153 ~A~~~~~~al~~--~p~----~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHEG--HED----DGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGTT--TSC----HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhcc--ccc----hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777777776653 332 344444444445444 556777777777654
No 123
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.98 E-value=1.5e-08 Score=107.00 Aligned_cols=97 Identities=15% Similarity=0.183 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-----CCCH
Q 038852 248 VYNNLISGFLNLGNLEKANELFDELKQR------CLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNF-----RMTP 316 (851)
Q Consensus 248 ~~~~Li~~~~~~g~~~~A~~~~~~~~~~------~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-----~~~~ 316 (851)
+++.++.+|...|++++|+.+|+++++. .......++..++.+|.+.|++++|+++++++++... ..-.
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 3444444444444444444444444421 0111122444445555555555555555554443211 0113
Q ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Q 038852 317 ATCNTLLEVLLKHE-KKEEAQALFEQMLD 344 (851)
Q Consensus 317 ~~~~~Li~~~~~~g-~~~~A~~l~~~m~~ 344 (851)
.+|..++.+|.+.| ++++|++.|++++.
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 45566666666666 34666666666554
No 124
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.97 E-value=1.7e-08 Score=106.68 Aligned_cols=134 Identities=13% Similarity=0.080 Sum_probs=79.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCcc-c----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHh------cCCCCHHHH
Q 038852 251 NLISGFLNLGNLEKANELFDELKQRCLVY-D----GVVNATFMEWWFNQGKDKEAMQSYKSLMER------NFRMTPATC 319 (851)
Q Consensus 251 ~Li~~~~~~g~~~~A~~~~~~~~~~~~~~-d----~~~~~~li~~~~~~g~~~~A~~l~~~~~~~------~~~~~~~~~ 319 (851)
.++..+...+++++|+..|+++++..... + ..+++.++.+|...|++++|+++|+++++. +......++
T Consensus 120 ~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 199 (293)
T 3u3w_A 120 YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR 199 (293)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHH
Confidence 34555555556666666666665532111 1 235667777777777777777777777641 111122356
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcC-ChHHHHHHHHHhcc
Q 038852 320 NTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHG-KFSEAIETFKKAGT 384 (851)
Q Consensus 320 ~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g-~~~~A~~~~~~~~~ 384 (851)
..++.+|.+.|++++|+++++++++.....+....-..+|..++.+|.+.| ++++|++.|+++..
T Consensus 200 ~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 200 YNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 667777777777777777777766432111111113677777777777777 77777777766543
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.97 E-value=1.6e-08 Score=92.04 Aligned_cols=97 Identities=11% Similarity=0.087 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038852 141 TCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKG 220 (851)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~ 220 (851)
.+..++..|.+.|++++|++.|+++++..+ .+..+|..++.+|.+.|++++|++.|+++++.++. +..+|..++.+
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~lg~~ 90 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDP--ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK--FIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh--hhHHHHHHHHH
Confidence 344444444445555555555544444322 23444444444444445555555444444444433 44444444444
Q ss_pred HHHcCCHHHHHHHHHHHHhcC
Q 038852 221 FVDAGRIGEAVDLLRDMLSRQ 241 (851)
Q Consensus 221 ~~~~g~~~~A~~l~~~m~~~g 241 (851)
|...|++++|++.|+++++..
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHHHC
Confidence 444444444444444444443
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.96 E-value=2.1e-08 Score=91.27 Aligned_cols=111 Identities=12% Similarity=0.094 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLIS 254 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~ 254 (851)
...+..++..|.+.|++++|++.|+++++.++. +..+|..++.+|.+.|++++|++.|+++++.+.. +...|..++.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~ 89 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE--NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHH
Confidence 456777888888888888888888888888766 7788888888888888888888888888887665 7788888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHH
Q 038852 255 GFLNLGNLEKANELFDELKQRCLVYDGVVNATFME 289 (851)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~ 289 (851)
+|...|++++|++.|+++++.++. +..++..+..
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l~~ 123 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVDPS-NEEAREGVRN 123 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHHHH
Confidence 888888888888888888887665 5555555544
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.93 E-value=3.5e-08 Score=93.58 Aligned_cols=96 Identities=13% Similarity=0.184 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038852 177 SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGF 256 (851)
Q Consensus 177 ~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~ 256 (851)
.|..++..+...|++++|+..|+++++..+. +..+|..++.++...|++++|++.|+++++.... +..+|..++.+|
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS--NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 3444555555555555555555555554433 4445555555555555555555555555554332 444555555555
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 038852 257 LNLGNLEKANELFDELKQR 275 (851)
Q Consensus 257 ~~~g~~~~A~~~~~~~~~~ 275 (851)
...|++++|+++|+++++.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh
Confidence 5555555555555555544
No 128
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.93 E-value=4e-08 Score=103.78 Aligned_cols=167 Identities=14% Similarity=0.151 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CC--HH
Q 038852 177 SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSS----NTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG---AD--SL 247 (851)
Q Consensus 177 ~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~----~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~---pd--~~ 247 (851)
.+...+..+...|++++|++.+++.++......+. ..+..++..+...|++++|++.|+++++.... .. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 44556667777888888888887777654331111 22344555666677777777777777653221 11 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCc-c--chhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----CCH
Q 038852 248 VYNNLISGFLNLGNLEKANELFDELKQR---CLV-Y--DGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFR-----MTP 316 (851)
Q Consensus 248 ~~~~Li~~~~~~g~~~~A~~~~~~~~~~---~~~-~--d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~-----~~~ 316 (851)
+|+.++.+|...|++++|+.+|+++++. ... . ...++..++.+|.+.|++++|+++|+++++.... ...
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6777777777777777777777776632 111 0 1135555555555566666666555555433210 012
Q ss_pred HHHHHHHHHHHhCCCHHHH-HHHHHHHH
Q 038852 317 ATCNTLLEVLLKHEKKEEA-QALFEQML 343 (851)
Q Consensus 317 ~~~~~Li~~~~~~g~~~~A-~~l~~~m~ 343 (851)
.+|..++.+|.+.|++++| ...|++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3445555555555555555 44454443
No 129
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.92 E-value=4.6e-08 Score=92.80 Aligned_cols=131 Identities=13% Similarity=0.119 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLT 218 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li 218 (851)
...|..++..+...|++++|+..|+++++... .+..+|..++.++...|++++|++.|+++++.++. +..+|..++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~a 88 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK--YIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--cHHHHHHHH
Confidence 34677788888899999999999999887543 36788889999999999999999999999988765 778899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHh
Q 038852 219 KGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNN--LISGFLNLGNLEKANELFDELKQ 274 (851)
Q Consensus 219 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~--Li~~~~~~g~~~~A~~~~~~~~~ 274 (851)
.++...|++++|+++|+++++.... +...+.. ++..+.+.|++++|+++++....
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999987655 5555543 44447778888888888876543
No 130
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.92 E-value=7.6e-08 Score=101.56 Aligned_cols=172 Identities=10% Similarity=0.059 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN----IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS---- 210 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd----~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~---- 210 (851)
...+...+..+...|++++|++.+++.++......+ ...+..++..+...|++++|++.|+++++......+
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 456666777888889999999988887765432221 123456777778888999999999888764322111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc-----c
Q 038852 211 SNTYRHLTKGFVDAGRIGEAVDLLRDMLS---RQLGA---DSLVYNNLISGFLNLGNLEKANELFDELKQRCLV-----Y 279 (851)
Q Consensus 211 ~~~~~~Li~~~~~~g~~~~A~~l~~~m~~---~g~~p---d~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~-----~ 279 (851)
..+|+.++.+|...|++++|+++|+++++ ..... +..++..++.+|.+.|++++|+++|+++++.... .
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 45788888899999999999999988873 21110 1257888888999999999999998887754211 1
Q ss_pred chhhHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q 038852 280 DGVVNATFMEWWFNQGKDKEA-MQSYKSLMER 310 (851)
Q Consensus 280 d~~~~~~li~~~~~~g~~~~A-~~l~~~~~~~ 310 (851)
-..++..++.+|.+.|++++| ...|++++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 256778888889999999998 7778877654
No 131
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.92 E-value=2.6e-07 Score=102.99 Aligned_cols=97 Identities=7% Similarity=-0.072 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----ccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CCCC----H
Q 038852 248 VYNNLISGFLNLGNLEKANELFDELKQRCL-----VYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERN--FRMT----P 316 (851)
Q Consensus 248 ~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~-----~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~--~~~~----~ 316 (851)
++..|+..|...|++++|..+++++..... .....++..++.+|...|++++|..++++++... ...+ .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 444455555555555555555554433210 1113344555555555555555555555544321 1111 1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 038852 317 ATCNTLLEVLLKHEKKEEAQALFEQMLD 344 (851)
Q Consensus 317 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~ 344 (851)
..+..++..+...+++++|...|.++.+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3455566666777777777777776654
No 132
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.90 E-value=2.8e-08 Score=102.52 Aligned_cols=201 Identities=9% Similarity=-0.039 Sum_probs=148.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHHcCChhHHHHHHHHHHHc-----------
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAI-------IAAMYRAKRYDDAVALFKYFFDQ----------- 168 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~l~~~~~~~----------- 168 (851)
++.....+ ..++...|+..|.+++... +-....|+.+ ...+.+.++..+++..+.+.+..
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~ 87 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAI 87 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEEC
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhcc
Confidence 44555555 5899999999999999776 3467888888 67777777788888777766541
Q ss_pred CCCC--------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 038852 169 ADIV--------PNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSR 240 (851)
Q Consensus 169 ~~~~--------pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 240 (851)
.|.- --...+..++.++...|++++|.++|+.+...++. +. ....+...+.+.+++++|+..|+...+.
T Consensus 88 ~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~--~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~ 164 (282)
T 4f3v_A 88 GGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE--HL-VAWMKAVVYGAAERWTDVIDQVKSAGKW 164 (282)
T ss_dssp CTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH--HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC
T ss_pred CCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc--hH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc
Confidence 1110 00234556777888999999999999988765432 33 7777788899999999999999866554
Q ss_pred CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcc--chhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 038852 241 QLGAD--SLVYNNLISGFLNLGNLEKANELFDELKQRCLVY--DGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFR 313 (851)
Q Consensus 241 g~~pd--~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~--d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~ 313 (851)
. .+. ..++..++.++...|++++|++.|+++......| .......+..++.+.|+.++|..+|+++...++.
T Consensus 165 ~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 165 P-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp S-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred C-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 2 111 3467888999999999999999999988544213 3456677788889999999999999999888764
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.89 E-value=1.4e-08 Score=95.60 Aligned_cols=100 Identities=16% Similarity=0.093 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLIS 254 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~ 254 (851)
...+..++.++.+.|++++|+..|+++++.+|. +...|..++.+|...|++++|++.|+++++..+. +...|..++.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~--~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY--NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 445666777777777777777777777777665 6667777777777777777777777777776555 5666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCC
Q 038852 255 GFLNLGNLEKANELFDELKQRCL 277 (851)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~~~~~~ 277 (851)
+|.+.|++++|++.|+++++...
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC
Confidence 77777777777777777766543
No 134
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.89 E-value=1.8e-08 Score=103.82 Aligned_cols=192 Identities=10% Similarity=-0.046 Sum_probs=134.8
Q ss_pred HcCChHHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHhc------------CC-----
Q 038852 187 DEGKVDEGMNVFRRIIETAPVGPSSNTYRHL-------TKGFVDAGRIGEAVDLLRDMLSR------------QL----- 242 (851)
Q Consensus 187 ~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~L-------i~~~~~~g~~~~A~~l~~~m~~~------------g~----- 242 (851)
..++...|++.|.++.+.++. ....|+.+ ..++.+.++..+++..+...++. |.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~--~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES--ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChh--hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 468888888888888888776 66688777 56666666677777776666651 11
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-CHHH
Q 038852 243 ---GADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRM-TPAT 318 (851)
Q Consensus 243 ---~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~-~~~~ 318 (851)
.--...+..++.++...|++++|.++|+.+...+.. +. ....+...+.+.+++++|+..|+......... ....
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~-~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a 173 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE-HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAA 173 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH-HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHH
Confidence 001244556777788888888888888877765533 33 66666778888888888888887554332100 1236
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccC
Q 038852 319 CNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTH 385 (851)
Q Consensus 319 ~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~ 385 (851)
+..+..++...|++++|++.|+++......|.. .......++.++.+.|+.++|..+|+++...
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~---~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEAC---ARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTT---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 677888889999999999999988753322421 3457788888888999999999999888654
No 135
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.89 E-value=6.2e-08 Score=96.45 Aligned_cols=132 Identities=11% Similarity=-0.005 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038852 176 VSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISG 255 (851)
Q Consensus 176 ~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~ 255 (851)
..+..++..+...|++++|++.|++++ .++..+|..++.+|...|++++|++.|+++++.... +..+|..++.+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~ 80 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHH
Confidence 346677888899999999999999884 347889999999999999999999999999988655 78899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCcc---------------chhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 038852 256 FLNLGNLEKANELFDELKQRCLVY---------------DGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFR 313 (851)
Q Consensus 256 ~~~~g~~~~A~~~~~~~~~~~~~~---------------d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~ 313 (851)
|...|++++|++.|+++++..... ...++..++.+|.+.|++++|++.|+++++.+..
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 999999999999999998854331 2367788888899999999999999988887653
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.88 E-value=2.5e-08 Score=98.25 Aligned_cols=122 Identities=15% Similarity=0.071 Sum_probs=60.2
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHHcC
Q 038852 150 YRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPV----GPSSNTYRHLTKGFVDAG 225 (851)
Q Consensus 150 ~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~----~p~~~~~~~Li~~~~~~g 225 (851)
...|++++|+++++.+.. .......++..++.+|...|++++|+..|+++++.... .....++..++.+|...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA--HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHT--STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 346677777774444322 11123456666666666667777777666666552110 012334555555566666
Q ss_pred CHHHHHHHHHHHHhc---CC-C--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038852 226 RIGEAVDLLRDMLSR---QL-G--ADSLVYNNLISGFLNLGNLEKANELFDELK 273 (851)
Q Consensus 226 ~~~~A~~l~~~m~~~---g~-~--pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~ 273 (851)
++++|++.|+++++. .. . ....++..++.++...|++++|++.|++.+
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 666666666555443 11 1 012334445555555555555555555544
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.87 E-value=1.6e-08 Score=99.73 Aligned_cols=166 Identities=14% Similarity=0.077 Sum_probs=83.2
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C---CCCHHHHHHHHHHHHhcC
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQ--L---GADSLVYNNLISGFLNLG 260 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g--~---~pd~~~~~~Li~~~~~~g 260 (851)
...|++++|+++++.+.. ++ .....++..++.++...|++++|++.|+++++.. . .....++..++.+|...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HP-ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHT-ST-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcC-Ch-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 455677777774444422 21 1245566666667777777777777776665521 0 012244555566666666
Q ss_pred CHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 038852 261 NLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFE 340 (851)
Q Consensus 261 ~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~ 340 (851)
++++|++.|++.++.... .++ .......++..++.++...|++++|+++|+
T Consensus 81 ~~~~A~~~~~~al~~~~~---------------~~~--------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 131 (203)
T 3gw4_A 81 NWDAARRCFLEERELLAS---------------LPE--------------DPLAASANAYEVATVALHFGDLAGARQEYE 131 (203)
T ss_dssp CHHHHHHHHHHHHHHHHH---------------SCC--------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH---------------cCc--------------cHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 666666666555443000 000 000011345555666666666666666666
Q ss_pred HHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 038852 341 QMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKA 382 (851)
Q Consensus 341 ~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~ 382 (851)
++++.....+.......++..++.+|...|++++|+++|+++
T Consensus 132 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 132 KSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 655321110000001234566677777777777777777665
No 138
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.86 E-value=8.3e-07 Score=98.91 Aligned_cols=203 Identities=10% Similarity=-0.029 Sum_probs=152.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPT----------------VFTCNAIIAAMYRAKRYDDAVALFKYFFDQAD 170 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~----------------~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~ 170 (851)
....++.+.+.|++++|++.|..++....... ..++..|+..|.+.|++++|+++|..++...+
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 44668889999999999999999987543211 13477899999999999999999998876433
Q ss_pred CCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 038852 171 IVPNI----VSYNNLINTYCDEGKVDEGMNVFRRIIETA---PVG-PSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQL 242 (851)
Q Consensus 171 ~~pd~----~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~---~~~-p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~ 242 (851)
...+. .+.+.+...+...|++++|++++++++... ... .-..++..|+..|...|++++|+.+++++...-.
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK 166 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 22232 234445555556799999999999887542 111 2256788999999999999999999998875321
Q ss_pred CC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--Cc-c---chhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 243 GA-----DSLVYNNLISGFLNLGNLEKANELFDELKQRC--LV-Y---DGVVNATFMEWWFNQGKDKEAMQSYKSLME 309 (851)
Q Consensus 243 ~p-----d~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~--~~-~---d~~~~~~li~~~~~~g~~~~A~~l~~~~~~ 309 (851)
.. ...++..++.+|...|++++|..++++++... .. + -..++..++..+...|++++|...|.++.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 24688899999999999999999999887542 11 1 135666777788889999999999888765
No 139
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.85 E-value=5.9e-08 Score=88.07 Aligned_cols=97 Identities=11% Similarity=0.141 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038852 176 VSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISG 255 (851)
Q Consensus 176 ~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~ 255 (851)
..|..++..+...|++++|+++|+++++..+. +..+|..++.+|...|++++|+++|+++++.... +..++..++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK--DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT--CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence 34444444444444444444444444443322 3444444444444444444444444444444322 34444444444
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 038852 256 FLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 256 ~~~~g~~~~A~~~~~~~~~~ 275 (851)
|.+.|++++|++.|+++++.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 44444444444444444443
No 140
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.84 E-value=8.7e-08 Score=86.37 Aligned_cols=117 Identities=17% Similarity=0.188 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038852 140 FTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTK 219 (851)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~ 219 (851)
..+..++..+...|++++|++.|++++.... .+...|..++.+|...|++++|++.|+++++..+. +..+|..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~ 88 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNP--ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA--YSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc--CHHHHHHHHH
Confidence 4455556666666666666666666655432 24555666666666666666666666666665544 4556666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 038852 220 GFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGN 261 (851)
Q Consensus 220 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~ 261 (851)
+|...|++++|+++|+++++.... +...+..++.++.+.|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence 666666666666666666665443 55555556666655554
No 141
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.84 E-value=1.3e-07 Score=84.42 Aligned_cols=97 Identities=21% Similarity=0.418 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038852 140 FTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTK 219 (851)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~ 219 (851)
..|..++..+...|++++|+++|+++++... .+..++..++.++...|++++|+.+|+++++..+. +..++..++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~ 85 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc--cHHHHHHHHH
Confidence 3444444444444444444444444443321 23344444444444444444444444444444322 3344444444
Q ss_pred HHHHcCCHHHHHHHHHHHHhc
Q 038852 220 GFVDAGRIGEAVDLLRDMLSR 240 (851)
Q Consensus 220 ~~~~~g~~~~A~~l~~~m~~~ 240 (851)
+|...|++++|+++|+++++.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHh
Confidence 444444444444444444443
No 142
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.83 E-value=7.9e-08 Score=86.68 Aligned_cols=120 Identities=9% Similarity=0.064 Sum_probs=92.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 174 d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
+...|..++..+...|++++|++.|+++++..+. +..+|..++.++...|++++|+++|+++++.... +..++..++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA--NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHH
Confidence 3456777888888888898899888888887655 6778888888888888888888888888887554 677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCH
Q 038852 254 SGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKD 297 (851)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~ 297 (851)
.+|...|++++|+++|+++++.... +...+..+..++.+.|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 8888888888888888888776544 455666666666655543
No 143
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.83 E-value=2.1e-08 Score=105.28 Aligned_cols=100 Identities=11% Similarity=0.015 Sum_probs=81.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHH
Q 038852 210 SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFME 289 (851)
Q Consensus 210 ~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~ 289 (851)
+...+..++..+...|++++|+++|+++++.... +...|..++.+|.+.|++++|++.|+++++.+.. +...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 5567888888888999999999999998887655 7888888899999999999999999888877654 5667777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhc
Q 038852 290 WWFNQGKDKEAMQSYKSLMERN 311 (851)
Q Consensus 290 ~~~~~g~~~~A~~l~~~~~~~~ 311 (851)
+|...|++++|++.|+++++.+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA 102 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 7888888888888887777654
No 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.83 E-value=6.6e-08 Score=104.31 Aligned_cols=134 Identities=8% Similarity=0.066 Sum_probs=99.6
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC-------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 038852 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN-------------IVSYNNLINTYCDEGKVDEGMNVFRRIIET 204 (851)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd-------------~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~ 204 (851)
+...|..+...|.+.|++++|+..|+++++......+ ..+|..++.+|.+.|++++|+..|+++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567778888888888999999888888776432211 467777888888888888888888888877
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 038852 205 APVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKA-NELFDELKQ 274 (851)
Q Consensus 205 ~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A-~~~~~~~~~ 274 (851)
++. +..+|..++.+|...|++++|+..|+++++.... +..++..+..++.+.|++++| ..+|++|..
T Consensus 226 ~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 DSN--NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665 6777788888888888888888888888777555 667777777777777777777 445555543
No 145
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.83 E-value=1.7e-07 Score=83.66 Aligned_cols=116 Identities=17% Similarity=0.313 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLIS 254 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~ 254 (851)
..+|..++.++...|++++|+++|+++++..+. +..++..++.++...|++++|+.+|+++++.... +..++..++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHH
Confidence 566777888888888888888888888887654 6778888888888888888888888888877544 6778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHc
Q 038852 255 GFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQ 294 (851)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~ 294 (851)
+|...|++++|+.+|+++++.... +...+..+..++...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhc
Confidence 888888888888888888876554 555666666666544
No 146
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.81 E-value=7.7e-09 Score=97.36 Aligned_cols=101 Identities=12% Similarity=0.037 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHH
Q 038852 210 SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFME 289 (851)
Q Consensus 210 ~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~ 289 (851)
+...|..++.++.+.|++++|+++|+++++..+. +...|..++.+|...|++++|++.|+++++.+.. +...+..++.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 5567888888999999999999999999988766 8888999999999999999999999999888766 6778888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcC
Q 038852 290 WWFNQGKDKEAMQSYKSLMERNF 312 (851)
Q Consensus 290 ~~~~~g~~~~A~~l~~~~~~~~~ 312 (851)
+|.+.|++++|++.|+++++...
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC
Confidence 88888888888888888887754
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.81 E-value=7.6e-08 Score=87.34 Aligned_cols=118 Identities=9% Similarity=0.083 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038852 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHL 217 (851)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~L 217 (851)
+...|..++..+.+.|++++|+++|+++++... .+..+|..++.+|...|++++|+++|+++++..+. +..+|..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l 90 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP--KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT--FIKGYTRK 90 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT--TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--chHHHHHH
Confidence 455667777777777777777777777765432 35667777777777777888888888777777654 66677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 038852 218 TKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLG 260 (851)
Q Consensus 218 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g 260 (851)
+.++...|++++|++.|+++++.... +...+..+..++.+.|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 77777888888888888777776443 4456666666665554
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.80 E-value=2.1e-08 Score=94.08 Aligned_cols=98 Identities=12% Similarity=0.068 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLIS 254 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~ 254 (851)
...+..++..+...|++++|+..|+++++.++. +...|..++.+|...|++++|++.|+++++.... +..++..++.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY--DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 445566666666677777777777777666555 6666666777777777777777777777666544 5566666677
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 038852 255 GFLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~~~~ 275 (851)
+|...|++++|++.|+++++.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777666654
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.79 E-value=9.5e-08 Score=103.06 Aligned_cols=153 Identities=11% Similarity=0.106 Sum_probs=113.0
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-------------HHHHHHHH
Q 038852 152 AKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS-------------SNTYRHLT 218 (851)
Q Consensus 152 ~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~-------------~~~~~~Li 218 (851)
.+++++|++.|+..++... .+...|..++.+|.+.|++++|+..|+++++..+...+ ..+|..++
T Consensus 126 L~~~~~A~~~~~~a~~~~p--~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKL--EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEEECCCCGGGCCHHHHH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH
Confidence 3456666666655433210 14567888999999999999999999999988765221 57788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHH
Q 038852 219 KGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDK 298 (851)
Q Consensus 219 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~ 298 (851)
.+|.+.|++++|++.|+++++.... +..+|..++.+|...|++++|+..|+++++.... +..++..+..++.+.|+++
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888887655 7778888888888888888888888888877655 5667777777777777777
Q ss_pred HH-HHHHHHHH
Q 038852 299 EA-MQSYKSLM 308 (851)
Q Consensus 299 ~A-~~l~~~~~ 308 (851)
+| .++|+.|.
T Consensus 282 ~a~~~~~~~~~ 292 (336)
T 1p5q_A 282 AREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 76 34555544
No 150
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.79 E-value=4.9e-08 Score=94.30 Aligned_cols=122 Identities=7% Similarity=0.104 Sum_probs=61.6
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH-HHHcCCh-
Q 038852 114 LIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINT-YCDEGKV- 191 (851)
Q Consensus 114 l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~-~~~~g~~- 191 (851)
+...|++++|+..+++++... ..+...|..++.+|...|++++|+..|+++++..+ .+...|..++.+ |...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG--ENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhcCCcc
Confidence 445555555555555555443 23445555555555555555555555555544322 234445555555 4455555
Q ss_pred -HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 038852 192 -DEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSR 240 (851)
Q Consensus 192 -~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 240 (851)
++|+.+|+++++.++. +..+|..++.+|...|++++|+..|+++++.
T Consensus 97 ~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSN--EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 5555555555555443 4445555555555555555555555555554
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.78 E-value=1.5e-07 Score=85.06 Aligned_cols=96 Identities=11% Similarity=0.153 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038852 177 SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGF 256 (851)
Q Consensus 177 ~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~ 256 (851)
.|..++..+.+.|++++|++.|+++++.++. +..+|..++.+|.+.|++++|++.|+++++.... +..+|..++.+|
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE--DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 3445555555555555555555555555444 4555555555555555555555555555555433 455555555555
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 038852 257 LNLGNLEKANELFDELKQR 275 (851)
Q Consensus 257 ~~~g~~~~A~~~~~~~~~~ 275 (851)
...|++++|++.|+++++.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 5555555555555555544
No 152
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.78 E-value=1.7e-08 Score=99.69 Aligned_cols=132 Identities=14% Similarity=0.109 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC--------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN--------------IVSYNNLINTYCDEGKVDEGMNVFRRIIET 204 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd--------------~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~ 204 (851)
...+..+...+.+.|++++|+++|+++++.....++ ..+|..++.+|...|++++|+..|+++++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345667777788888888888888888764332221 256777777777777777777777777777
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Q 038852 205 APVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKAN-ELFDELK 273 (851)
Q Consensus 205 ~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~-~~~~~~~ 273 (851)
++. +..+|..++.+|...|++++|++.|+++++.... +..++..+..++...++.+++. ..|..+.
T Consensus 118 ~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 118 DKN--NVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp STT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC----------
T ss_pred Ccc--cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 654 6677777777777777777777777777776544 6666777777776666666555 3444443
No 153
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.77 E-value=1.3e-08 Score=100.63 Aligned_cols=152 Identities=9% Similarity=0.055 Sum_probs=90.2
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC--------------H
Q 038852 146 IAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS--------------S 211 (851)
Q Consensus 146 i~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~--------------~ 211 (851)
+......|++++|.+.++..... .......+..++..+...|++++|+++|+++++..+..++ .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -----------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 33344566777776666533221 0013456778888888899999999999998886554331 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHH
Q 038852 212 NTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWW 291 (851)
Q Consensus 212 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~ 291 (851)
.+|..++.+|...|++++|+..|+++++.... +..++..++.+|...|++++|++.|+++++.... +..++..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHH
Confidence 56666777777777777777777777766444 5666667777777777777777777776665443 445555555555
Q ss_pred HHcCCHHHHH
Q 038852 292 FNQGKDKEAM 301 (851)
Q Consensus 292 ~~~g~~~~A~ 301 (851)
...++.+++.
T Consensus 167 ~~~~~~~~~~ 176 (198)
T 2fbn_A 167 NKLKEARKKD 176 (198)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 5555444444
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.76 E-value=1.9e-07 Score=84.36 Aligned_cols=99 Identities=12% Similarity=0.153 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLT 218 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li 218 (851)
...|..++..+.+.|++++|++.|+++++..+ .+...|..++.+|.+.|++++|++.|+++++.++. +..+|..++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg 79 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP--EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN--FVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--cHHHHHHHH
Confidence 35677788888899999999999999887643 46788899999999999999999999999998766 788899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcC
Q 038852 219 KGFVDAGRIGEAVDLLRDMLSRQ 241 (851)
Q Consensus 219 ~~~~~~g~~~~A~~l~~~m~~~g 241 (851)
.++...|++++|++.|+++++..
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhC
Confidence 99999999999999999988875
No 155
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.76 E-value=4.3e-08 Score=94.70 Aligned_cols=123 Identities=11% Similarity=0.118 Sum_probs=72.3
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCH-
Q 038852 150 YRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKG-FVDAGRI- 227 (851)
Q Consensus 150 ~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~-~~~~g~~- 227 (851)
...|++++|++.|+++++... .+...|..++.+|...|++++|+..|+++++.++. +...|..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANP--QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE--NAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHCC--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhcCCcc
Confidence 345666666666666655432 34556666666666666666666666666665544 55566666666 5566666
Q ss_pred -HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038852 228 -GEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCL 277 (851)
Q Consensus 228 -~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~ 277 (851)
++|+.+|+++++.... +..++..++.+|...|++++|+..|+++++...
T Consensus 97 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 6666666666665443 555666666666666666666666666665543
No 156
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.75 E-value=4.6e-08 Score=91.74 Aligned_cols=113 Identities=12% Similarity=0.013 Sum_probs=92.5
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038852 196 NVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 196 ~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~ 275 (851)
..|+++++.++. +...+..++..+...|++++|+.+|+++++.... +...|..++.+|...|++++|++.|+++++.
T Consensus 8 ~~~~~al~~~p~--~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 8 GTIAMLNEISSD--TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp CSHHHHTTCCHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHcCCHh--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 345566554433 5667888888999999999999999999988666 8888889999999999999999999999887
Q ss_pred CCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 038852 276 CLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNF 312 (851)
Q Consensus 276 ~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~ 312 (851)
+.. +...+..++.+|...|++++|++.|+++++...
T Consensus 85 ~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 85 DIX-EPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp STT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred CCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 665 677788888888889999999998888887654
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.71 E-value=1.8e-07 Score=89.09 Aligned_cols=98 Identities=9% Similarity=0.103 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLIS 254 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~ 254 (851)
...|..++..|...|++++|+++|+++++.++. +...|..++.+|...|++++|++.|+++++.... +..+|..++.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA--NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 334455555555555555555555555555443 4455555555555555555555555555555433 4555555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 038852 255 GFLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~~~~ 275 (851)
+|...|++++|++.|+++++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 555555555555555555544
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.71 E-value=1.9e-07 Score=86.60 Aligned_cols=97 Identities=14% Similarity=0.101 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038852 176 VSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISG 255 (851)
Q Consensus 176 ~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~ 255 (851)
..+..++..+...|++++|+.+|+++++.++. +...|..++.+|...|++++|+..|+++++.... +...+..++.+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 95 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHY--DARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHH
Confidence 34455555566666666666666666665544 5556666666666666666666666666665444 45555666666
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 038852 256 FLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 256 ~~~~g~~~~A~~~~~~~~~~ 275 (851)
|...|++++|++.|+++++.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666665554
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.69 E-value=5.7e-07 Score=79.27 Aligned_cols=96 Identities=14% Similarity=0.187 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038852 177 SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGF 256 (851)
Q Consensus 177 ~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~ 256 (851)
.|..++..+...|++++|+.+|+++++..+. +...|..++.++...|++++|++.|+++++.... +...+..++.+|
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH--NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 3444444445555555555555555444333 4444445555555555555555555555444332 344444455555
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 038852 257 LNLGNLEKANELFDELKQR 275 (851)
Q Consensus 257 ~~~g~~~~A~~~~~~~~~~ 275 (851)
...|++++|.++|+++++.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 5555555555555544443
No 160
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.67 E-value=9.7e-07 Score=77.75 Aligned_cols=112 Identities=15% Similarity=0.133 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLT 218 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li 218 (851)
...+..++..+...|++++|+.+|+++++... .+...|..++.+|...|++++|+..++++++..+. +...|..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a 79 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDP--HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD--WGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc--cHHHHHHHH
Confidence 45677788888889999999999998877543 36778888888999999999999999999888765 777888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038852 219 KGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISG 255 (851)
Q Consensus 219 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~ 255 (851)
.++...|++++|+++|+++++.+.. +...+..+..+
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 115 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHEAN-NPQLKEGLQNM 115 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHh
Confidence 9999999999999999999887654 55666555544
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.66 E-value=3.5e-07 Score=87.08 Aligned_cols=102 Identities=15% Similarity=0.123 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038852 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHL 217 (851)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~L 217 (851)
+...|..+...+.+.|++++|+++|+++++... .+...|..++.+|...|++++|+..|+++++.++. +..+|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP--ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK--YSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHH
Confidence 456677788888889999999999998887643 36778888999999999999999999999988766 78888999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC
Q 038852 218 TKGFVDAGRIGEAVDLLRDMLSRQLG 243 (851)
Q Consensus 218 i~~~~~~g~~~~A~~l~~~m~~~g~~ 243 (851)
+.+|...|++++|++.|+++++....
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999998887544
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.65 E-value=5.5e-07 Score=82.35 Aligned_cols=99 Identities=13% Similarity=0.045 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 174 d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
+...|..++..+...|++++|+..|+++++.++. +..+|..++.+|...|++++|+..|+++++.... +...|..++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL--VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 4555666666666666666666666666666544 5556666666666666666666666666665444 556666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 038852 254 SGFLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~~~~ 275 (851)
.+|...|++++|+..|+++++.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 6666666666666666666543
No 163
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.65 E-value=2.5e-07 Score=85.88 Aligned_cols=101 Identities=13% Similarity=0.054 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038852 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHL 217 (851)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~L 217 (851)
+...+..+...+.+.|++++|+++|++++...+ .+...|..++.+|...|++++|+..|+++++.++. +...|..+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l 92 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH--YDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN--EPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CTHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--CcHHHHHH
Confidence 345566777788899999999999999887643 46778888999999999999999999999998876 66788889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC
Q 038852 218 TKGFVDAGRIGEAVDLLRDMLSRQL 242 (851)
Q Consensus 218 i~~~~~~g~~~~A~~l~~~m~~~g~ 242 (851)
+.+|...|++++|++.|+++++...
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999887643
No 164
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.64 E-value=3.1e-07 Score=83.53 Aligned_cols=98 Identities=14% Similarity=0.209 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CC----HHHH
Q 038852 176 VSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG--AD----SLVY 249 (851)
Q Consensus 176 ~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~--pd----~~~~ 249 (851)
.++..|+..|.+.|++++|++.|+++++.+|. +..+|..++.+|...|++++|++.|+++++.... .+ ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~--~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS--NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 34555666666666666666666666666554 5556666666666666666666666666553211 01 1244
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038852 250 NNLISGFLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 250 ~~Li~~~~~~g~~~~A~~~~~~~~~~ 275 (851)
..++.++...|++++|++.|++.++.
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55555555566666666665555543
No 165
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.62 E-value=7.3e-07 Score=80.98 Aligned_cols=107 Identities=19% Similarity=0.267 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-----HHHH
Q 038852 140 FTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS-----SNTY 214 (851)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~-----~~~~ 214 (851)
..+..|+..+.+.|++++|++.|+++++..+ .+..+|+.++.+|...|++++|++.|+++++.++.... ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p--~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDP--SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4677788899999999999999999987643 46788899999999999999999999998876543222 2467
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 038852 215 RHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYN 250 (851)
Q Consensus 215 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~ 250 (851)
..++.++...|++++|++.|++.++.. +|..+..
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~--~~~~~~~ 120 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEF--RDPELVK 120 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--CCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC--cCHHHHH
Confidence 788889999999999999999988753 3554443
No 166
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.58 E-value=4.8e-07 Score=81.46 Aligned_cols=92 Identities=15% Similarity=0.061 Sum_probs=46.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038852 180 NLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL 259 (851)
Q Consensus 180 ~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~ 259 (851)
.++..+.+.|++++|+..|+++++.++. +...|..++.++...|++++|+..|+++++.... +...+..++.+|...
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPE--REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 3444445555555555555555554443 4445555555555555555555555555554433 444455555555555
Q ss_pred CCHHHHHHHHHHHHh
Q 038852 260 GNLEKANELFDELKQ 274 (851)
Q Consensus 260 g~~~~A~~~~~~~~~ 274 (851)
|++++|++.|+++++
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555444
No 167
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=1.6e-06 Score=80.08 Aligned_cols=110 Identities=15% Similarity=0.113 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHH
Q 038852 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN----IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNT 213 (851)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd----~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~ 213 (851)
+...+..++..+...|++++|+++|+++++.. ++ ..+|..++.+|...|++++|++.|+++++..+. +...
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~ 101 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD---ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG--DVKA 101 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC--CHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc--CHHH
Confidence 44555556666666666666666666665432 33 455666666666677777777777766666544 5566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 214 YRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 214 ~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
|..++.+|...|++++|+++|+++++.... +..++..+.
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 140 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALR 140 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHH
Confidence 666666666777777777777666665433 444444333
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.56 E-value=7.3e-07 Score=80.25 Aligned_cols=97 Identities=10% Similarity=0.193 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CC----HHHHH
Q 038852 177 SYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG--AD----SLVYN 250 (851)
Q Consensus 177 ~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~--pd----~~~~~ 250 (851)
.|..++..+...|++++|+.+|+++++..+. +..++..++.+|...|++++|+.+|+++++.... .+ ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPT--NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3444445555555555555555555554433 4444555555555555555555555555443211 01 34444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 038852 251 NLISGFLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 251 ~Li~~~~~~g~~~~A~~~~~~~~~~ 275 (851)
.++.+|...|++++|++.|+++++.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4555555555555555555554443
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.56 E-value=1.2e-06 Score=80.17 Aligned_cols=101 Identities=17% Similarity=0.178 Sum_probs=89.0
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038852 137 PTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRH 216 (851)
Q Consensus 137 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~ 216 (851)
.+...|..++..+...|++++|+..|+++++... .+...|..++.+|...|++++|+..|+++++.++. +..+|..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~ 82 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ--SVKAHFF 82 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc--CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch--hHHHHHH
Confidence 4677888899999999999999999999987643 46788999999999999999999999999998766 7889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC
Q 038852 217 LTKGFVDAGRIGEAVDLLRDMLSRQ 241 (851)
Q Consensus 217 Li~~~~~~g~~~~A~~l~~~m~~~g 241 (851)
++.+|...|++++|++.|+++++..
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHC
Confidence 9999999999999999999988753
No 170
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.54 E-value=8e-07 Score=83.16 Aligned_cols=99 Identities=16% Similarity=0.157 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----H
Q 038852 140 FTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN----IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS----S 211 (851)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd----~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~----~ 211 (851)
.++..+...+...|++++|++.|+++++......+ ..++..++.+|...|++++|++.|+++++......+ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34556666666677777777777666542111111 134555666666666666666666665543211111 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038852 212 NTYRHLTKGFVDAGRIGEAVDLLRDML 238 (851)
Q Consensus 212 ~~~~~Li~~~~~~g~~~~A~~l~~~m~ 238 (851)
.++..++.++...|++++|+++|++++
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344445555555555555555555544
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=1.4e-06 Score=80.62 Aligned_cols=103 Identities=10% Similarity=0.053 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 038852 173 PNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS---SNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVY 249 (851)
Q Consensus 173 pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~---~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~ 249 (851)
.+...+..++..+...|++++|+++|+++++..+. + ..+|..++.+|...|++++|++.|+++++.... +...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT--PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc--chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHH
Confidence 35677888888888888888898888888875432 2 567888888888888888888888888877554 67778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCc
Q 038852 250 NNLISGFLNLGNLEKANELFDELKQRCLV 278 (851)
Q Consensus 250 ~~Li~~~~~~g~~~~A~~~~~~~~~~~~~ 278 (851)
..++.+|...|++++|+.+|+++++....
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 88888888888888888888888776543
No 172
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.53 E-value=8.2e-07 Score=100.03 Aligned_cols=123 Identities=7% Similarity=0.040 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC-------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 038852 140 FTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN-------------IVSYNNLINTYCDEGKVDEGMNVFRRIIETAP 206 (851)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd-------------~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~ 206 (851)
..|+.+...|.+.|++++|+..|+++++.....++ ..+|..++.+|.+.|++++|+..|+++++.++
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 34555555555666666666666655543221111 34444455555555555555555555554443
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038852 207 VGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKA 265 (851)
Q Consensus 207 ~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A 265 (851)
. +..+|..++.+|...|++++|+..|+++++.... +..++..+..++.+.++++++
T Consensus 349 ~--~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 349 A--NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred c--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 3 4444555555555555555555555555444332 334444444444444444443
No 173
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.52 E-value=2.5e-06 Score=98.34 Aligned_cols=172 Identities=9% Similarity=0.015 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 038852 156 DDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGK----------VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAG 225 (851)
Q Consensus 156 ~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~----------~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g 225 (851)
++|++++++++.... .+..+|+....++...|+ +++++++++++++.++. +..+|+....++.+.+
T Consensus 46 eeal~~~~~~l~~nP--~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK--~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 46 ESVLELTSQILGANP--DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK--SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp HHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHCc--hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcc
Confidence 355666666655432 234455555555555555 56666666666665544 5555665555555555
Q ss_pred --CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHH
Q 038852 226 --RIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLG-NLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQ 302 (851)
Q Consensus 226 --~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g-~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~ 302 (851)
++++++++++++++.+.+ |..+|+....++.+.| .++++++.++++++.++. |.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~--------------------- 178 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NY--------------------- 178 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CH---------------------
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-Cc---------------------
Confidence 446666666666665544 5555655555555555 555555555555554443 33
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHH
Q 038852 303 SYKSLMERNFRMTPATCNTLLEVLLKH--------------EKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFK 368 (851)
Q Consensus 303 l~~~~~~~~~~~~~~~~~~Li~~~~~~--------------g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~ 368 (851)
..|+....++.+. +.++++++++++++.. .|+ +..+|+.+..++.+
T Consensus 179 --------------saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--~P~----~~saW~y~~~ll~~ 238 (567)
T 1dce_A 179 --------------SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPN----DQSAWFYHRWLLGR 238 (567)
T ss_dssp --------------HHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--CSS----CSHHHHHHHHHHSC
T ss_pred --------------cHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--CCC----CccHHHHHHHHHhc
Confidence 4444444444332 4578899999988874 344 78889988888888
Q ss_pred cCChHH
Q 038852 369 HGKFSE 374 (851)
Q Consensus 369 ~g~~~~ 374 (851)
.++.++
T Consensus 239 ~~~~~~ 244 (567)
T 1dce_A 239 AEPHDV 244 (567)
T ss_dssp CCCCSC
T ss_pred CCCccc
Confidence 777554
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.51 E-value=6.4e-07 Score=83.85 Aligned_cols=142 Identities=17% Similarity=0.148 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHH
Q 038852 212 NTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG-ADS----LVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNAT 286 (851)
Q Consensus 212 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~----~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~ 286 (851)
.++..++.+|...|++++|++.|+++++.... .+. .++..++.+|...|++++|++.|+++++.....
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------- 82 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL------- 82 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-------
Confidence 35566666666666666666666666543111 011 244455555555555555555555544321000
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHH
Q 038852 287 FMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNEC 366 (851)
Q Consensus 287 li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~ 366 (851)
++. .....++..++.++...|++++|+++++++++.............++..++.+|
T Consensus 83 --------~~~---------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 139 (164)
T 3ro3_A 83 --------KDR---------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY 139 (164)
T ss_dssp --------TCH---------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --------CCc---------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHH
Confidence 000 000234555666777777777777777766542111000000234556666666
Q ss_pred HHcCChHHHHHHHHHhc
Q 038852 367 FKHGKFSEAIETFKKAG 383 (851)
Q Consensus 367 ~~~g~~~~A~~~~~~~~ 383 (851)
...|++++|+++|+++.
T Consensus 140 ~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 140 TALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHTCHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHH
Confidence 67777777777666653
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.51 E-value=9.9e-07 Score=79.33 Aligned_cols=92 Identities=13% Similarity=0.073 Sum_probs=48.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 038852 145 IIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDA 224 (851)
Q Consensus 145 li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~ 224 (851)
++..+.+.|++++|+..|+++++..+ .+...|..++.++...|++++|+..|+++++.++. +..+|..++.+|...
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKEP--EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK--DIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc
Confidence 34444455555555555555544322 24445555555555555555555555555555544 445555555555555
Q ss_pred CCHHHHHHHHHHHHhc
Q 038852 225 GRIGEAVDLLRDMLSR 240 (851)
Q Consensus 225 g~~~~A~~l~~~m~~~ 240 (851)
|++++|++.|+++++.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 5555555555555543
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.51 E-value=1.4e-07 Score=106.94 Aligned_cols=123 Identities=14% Similarity=0.139 Sum_probs=78.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038852 143 NAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFV 222 (851)
Q Consensus 143 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~ 222 (851)
..++..+.+.|++++|++.|+++++... .+..+|..++.+|.+.|++++|++.|+++++.++. +..+|..++.+|.
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~lg~~~~ 85 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK--YIKGYYRRAASNM 85 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHH
Confidence 3344455566777777777777766532 34667777777777777777777777777776554 6667777777777
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 038852 223 DAGRIGEAVDLLRDMLSRQLGADSLVYNNLISG--FLNLGNLEKANELFD 270 (851)
Q Consensus 223 ~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~--~~~~g~~~~A~~~~~ 270 (851)
..|++++|++.|+++++.... +...+..+..+ +.+.|++++|+++++
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777777777777766443 34445555544 666677777777766
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.50 E-value=1.3e-06 Score=78.54 Aligned_cols=114 Identities=12% Similarity=0.240 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-CC----HHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVG-PS----SNT 213 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~-p~----~~~ 213 (851)
...|..++..+...|++++|+.+|+++++... .+..++..++.+|...|++++|+.+|+++++..+.. .+ ..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDP--TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 34677788888888999999999988877542 367778888888888899999999998888765431 12 667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038852 214 YRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGF 256 (851)
Q Consensus 214 ~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~ 256 (851)
|..++.+|...|++++|++.|+++++.. ++...+..+..+.
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 122 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 8888888999999999999999888864 3555555554443
No 178
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.49 E-value=5.4e-06 Score=95.62 Aligned_cols=199 Identities=8% Similarity=0.010 Sum_probs=152.3
Q ss_pred HHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHcCCCCCCHH
Q 038852 108 HNRVQSLIRAGDL-DAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKR----------YDDAVALFKYFFDQADIVPNIV 176 (851)
Q Consensus 108 ~~ll~~l~~~g~~-~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~~~~~~~~~pd~~ 176 (851)
...+.++.+.|++ ++|++.+++++... ..+..+|+.-..++.+.|+ +++++++++++++... .+..
T Consensus 32 ~~~~~~~~~~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p--K~y~ 108 (567)
T 1dce_A 32 TQAVFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP--KSYG 108 (567)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT--TCHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC--CCHH
Confidence 3445566666665 56799999999776 3467789988888888887 9999999999998654 5788
Q ss_pred HHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 177 SYNNLINTYCDEG--KVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAG-RIGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 177 ~~~~Li~~~~~~g--~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
+|+....++.+.+ ++++++++++++++.++. |..+|+....++.+.| .++++++.++++++..+. |..+|+...
T Consensus 109 aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~--N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~ 185 (567)
T 1dce_A 109 TWHHRCWLLSRLPEPNWARELELCARFLEADER--NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRS 185 (567)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHH
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHhhccc--cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHH
Confidence 8999999999999 779999999999999877 9999999999999999 999999999999999877 899999988
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHH
Q 038852 254 SGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKE 333 (851)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~ 333 (851)
.++.+.++..++ +.. . -...+.++++++++++++..++. +...|+.+...+.+.++.+
T Consensus 186 ~ll~~l~~~~~~----------~~~-~----------~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 186 CLLPQLHPQPDS----------GPQ-G----------RLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp HHHHHHSCCCCS----------SSC-C----------SSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCS
T ss_pred HHHHhhcccccc----------ccc-c----------cccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCcc
Confidence 887765332100 000 0 00113456777777777776653 4567887777777766644
Q ss_pred H
Q 038852 334 E 334 (851)
Q Consensus 334 ~ 334 (851)
+
T Consensus 244 ~ 244 (567)
T 1dce_A 244 V 244 (567)
T ss_dssp C
T ss_pred c
Confidence 3
No 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.48 E-value=1.1e-06 Score=83.28 Aligned_cols=66 Identities=15% Similarity=0.199 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038852 211 SNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCL 277 (851)
Q Consensus 211 ~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~ 277 (851)
..+|..++.+|.+.|++++|+..++++++.+.. +..+|..++.+|...|++++|+..|+++++.+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 345566666666666666666666666665444 555666666666666666666666666665543
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.46 E-value=5.1e-06 Score=74.88 Aligned_cols=96 Identities=18% Similarity=0.202 Sum_probs=40.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 038852 145 IIAAMYRAKRYDDAVALFKYFFDQADIVPN-IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS-SNTYRHLTKGFV 222 (851)
Q Consensus 145 li~~~~~~g~~~~A~~l~~~~~~~~~~~pd-~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~-~~~~~~Li~~~~ 222 (851)
++..+.+.|++++|++.|+++++..+..+. ...+..++.+|...|++++|+..|+++++..+..+. ..++..++.++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 333444445555555555444443221110 023444444444444444444444444444333111 233444444444
Q ss_pred HcCCHHHHHHHHHHHHhc
Q 038852 223 DAGRIGEAVDLLRDMLSR 240 (851)
Q Consensus 223 ~~g~~~~A~~l~~~m~~~ 240 (851)
..|++++|++.|+++++.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 444444444444444443
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.44 E-value=2.3e-06 Score=96.33 Aligned_cols=145 Identities=10% Similarity=0.075 Sum_probs=97.0
Q ss_pred CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-------------HHHHHHHHH
Q 038852 153 KRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPS-------------SNTYRHLTK 219 (851)
Q Consensus 153 g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~-------------~~~~~~Li~ 219 (851)
+++++|++.|+..++.. ..+...|..++..|.+.|++++|+..|+++++..+..++ ..+|..++.
T Consensus 248 ~~~~~A~~~~~~~~~~~--~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK--LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEECCCCGGGSCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHH--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34556665554433211 013557888888999999999999999999887655321 567777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHH
Q 038852 220 GFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKE 299 (851)
Q Consensus 220 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~ 299 (851)
+|.+.|++++|+..|+++++.... +..+|..++.+|...|++++|+..|+++++.... +..++..+..++.+.+++++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777776554 6677777777777777777777777777766544 44556666666666665555
Q ss_pred HH
Q 038852 300 AM 301 (851)
Q Consensus 300 A~ 301 (851)
+.
T Consensus 404 a~ 405 (457)
T 1kt0_A 404 RD 405 (457)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.44 E-value=1.4e-06 Score=82.52 Aligned_cols=102 Identities=16% Similarity=0.219 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHc--------CC--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038852 140 FTCNAIIAAMYRAKRYDDAVALFKYFFDQ--------AD--------IVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIE 203 (851)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~--------~~--------~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~ 203 (851)
..+...+..+.+.|++++|+..|+++++. .. ...+..+|..++.+|.+.|++++|+..++++++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34556666677777777777777776653 00 012346788999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 038852 204 TAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG 243 (851)
Q Consensus 204 ~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~ 243 (851)
.++. +..+|..++.+|...|++++|+..|+++++....
T Consensus 92 ~~p~--~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 92 REET--NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred cCCc--chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 8876 8889999999999999999999999999987544
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.44 E-value=7e-06 Score=73.93 Aligned_cols=99 Identities=15% Similarity=0.071 Sum_probs=47.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPT--VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN-IVSYNNLIN 183 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd-~~~~~~Li~ 183 (851)
++.+...+...|++++|+..|++++....... ...+..++.++.+.|++++|+..|+++++.....+. ..++..++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34445555555555555555555554332111 034444555555555555555555555443221111 334455555
Q ss_pred HHHHcCChHHHHHHHHHHHHhC
Q 038852 184 TYCDEGKVDEGMNVFRRIIETA 205 (851)
Q Consensus 184 ~~~~~g~~~~A~~l~~~~~~~~ 205 (851)
+|...|++++|+..|+++++..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 5555555555555555555544
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.43 E-value=7.9e-07 Score=100.69 Aligned_cols=120 Identities=13% Similarity=0.117 Sum_probs=88.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC
Q 038852 111 VQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGK 190 (851)
Q Consensus 111 l~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~ 190 (851)
...+.+.|++++|+..+++++... ..+..+|..+..+|.+.|++++|++.|+++++... .+..+|..++.+|...|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK--KYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT--TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCC
Confidence 345777888888888888888764 34577888888888888888888888888877532 356778888888888888
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 038852 191 VDEGMNVFRRIIETAPVGPSSNTYRHLTKG--FVDAGRIGEAVDLLR 235 (851)
Q Consensus 191 ~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~--~~~~g~~~~A~~l~~ 235 (851)
+++|++.|+++++.++...+ ++..+..+ +.+.|++++|+++++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~--~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKD--AKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTT--HHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888888888766444 45555554 777888888888887
No 185
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.43 E-value=1.7e-06 Score=75.36 Aligned_cols=99 Identities=18% Similarity=0.157 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHH
Q 038852 176 VSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLG-ADSLVYNNLIS 254 (851)
Q Consensus 176 ~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~~~~~Li~ 254 (851)
..|..++.++...|++++|+..|+++++..+. +..+|..++.++...|++++|+++|+++++.... .+..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE--ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34555666666666666666666666666544 5556666666666666666666666666665321 03556666666
Q ss_pred HHHhc-CCHHHHHHHHHHHHhcC
Q 038852 255 GFLNL-GNLEKANELFDELKQRC 276 (851)
Q Consensus 255 ~~~~~-g~~~~A~~~~~~~~~~~ 276 (851)
+|.+. |++++|++.|++++...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 66666 66666666666666543
No 186
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.40 E-value=2e-06 Score=74.93 Aligned_cols=102 Identities=10% Similarity=0.036 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038852 139 VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLT 218 (851)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li 218 (851)
...|..++..+...|++++|+..|+++++... .+..+|..++.+|...|++++|++.|+++++..+...+..+|..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP--EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 34455666667777777777777777766532 3556677777777777777777777777777653322466777777
Q ss_pred HHHHHc-CCHHHHHHHHHHHHhcCC
Q 038852 219 KGFVDA-GRIGEAVDLLRDMLSRQL 242 (851)
Q Consensus 219 ~~~~~~-g~~~~A~~l~~~m~~~g~ 242 (851)
.++... |++++|++.|+++++...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhccc
Confidence 777777 777777777777776543
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.39 E-value=2.3e-06 Score=93.31 Aligned_cols=120 Identities=13% Similarity=0.157 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh----------------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 038852 176 VSYNNLINTYCDEGKVDEGMNVFRRIIET----------------APVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLS 239 (851)
Q Consensus 176 ~~~~~Li~~~~~~g~~~~A~~l~~~~~~~----------------~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~ 239 (851)
..|..++..|.+.|++++|++.|+++++. .+. +..+|..++.+|.+.|++++|++.++++++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPV--ALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHH--HHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 34667777788888888888888877762 111 334555555555555555555555555555
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHH
Q 038852 240 RQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKE 299 (851)
Q Consensus 240 ~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~ 299 (851)
.... +..+|..++.+|...|++++|++.|+++++.... +..++..+..++.+.++.++
T Consensus 302 ~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 302 IDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp TCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred hCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 4433 4555555555555555555555555555554433 33344444444444443333
No 188
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.38 E-value=4.4e-06 Score=77.91 Aligned_cols=97 Identities=13% Similarity=0.158 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-----C-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHh------
Q 038852 141 TCNAIIAAMYRAKRYDDAVALFKYFFDQADIVP-----N-----IVSYNNLINTYCDEGKVDEGMNVFRRIIET------ 204 (851)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~p-----d-----~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~------ 204 (851)
.+..++..+.+.|++++|++.|+++++.....+ + ...|+.+..++.+.|++++|+..|+++++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 445556666667777777777777665433211 1 125555555555555555555555555554
Q ss_pred -CCCCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHh
Q 038852 205 -APVGPSSNTY----RHLTKGFVDAGRIGEAVDLLRDMLS 239 (851)
Q Consensus 205 -~~~~p~~~~~----~~Li~~~~~~g~~~~A~~l~~~m~~ 239 (851)
++. +...| ..++.++...|++++|+..|+++++
T Consensus 93 ~~pd--~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LNQD--EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTST--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCc--hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 333 33444 4444444455555555555544443
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.37 E-value=2.6e-06 Score=92.92 Aligned_cols=125 Identities=8% Similarity=0.113 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-------------C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 038852 140 FTCNAIIAAMYRAKRYDDAVALFKYFFDQAD-------------I-VPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETA 205 (851)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-------------~-~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~ 205 (851)
..|..+...+.+.|++++|++.|+++++... . ..+..+|..++.+|.+.|++++|++.++++++.+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 3567788888889999999999988876100 1 1245688999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038852 206 PVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANE 267 (851)
Q Consensus 206 ~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~ 267 (851)
+. +..+|..++.+|...|++++|++.|+++++.... +...+..+..++...++.+++.+
T Consensus 304 p~--~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PS--NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ch--hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 7889999999999999999999999999998665 77888888888888887777654
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.36 E-value=4.7e-06 Score=77.71 Aligned_cols=100 Identities=15% Similarity=0.102 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC-----CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGP-----SS-----NTYRHLTKGFVDAGRIGEAVDLLRDMLSR---- 240 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p-----~~-----~~~~~Li~~~~~~g~~~~A~~l~~~m~~~---- 240 (851)
...+..++..+...|++++|++.|+++++.++..+ +. ..|..+..++.+.|++++|+..|+++++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 34567788888999999999999999999876532 22 27888888888888888888888888776
Q ss_pred ---CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038852 241 ---QLGADSLVY----NNLISGFLNLGNLEKANELFDELKQR 275 (851)
Q Consensus 241 ---g~~pd~~~~----~~Li~~~~~~g~~~~A~~~~~~~~~~ 275 (851)
... +...| ..++.++...|++++|+..|+++++.
T Consensus 91 ~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 91 GELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 443 45566 77777777777777777777777654
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.32 E-value=1.1e-06 Score=94.90 Aligned_cols=149 Identities=9% Similarity=0.106 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038852 140 FTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTK 219 (851)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~ 219 (851)
..+..+...+.+.|++++|+..|+++++.. ++... +...|+++++...+. ..+|..++.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 345667777777888888888888876642 22221 112222222222111 014555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHH-HHHcCCHH
Q 038852 220 GFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEW-WFNQGKDK 298 (851)
Q Consensus 220 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~-~~~~g~~~ 298 (851)
+|.+.|++++|+..|+++++.... +..+|..++.+|...|++++|+..|+++++.... +..++..+..+ ....+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666555433 5555556666666666666666666665554333 33344444433 22334455
Q ss_pred HHHHHHHHHHHhc
Q 038852 299 EAMQSYKSLMERN 311 (851)
Q Consensus 299 ~A~~l~~~~~~~~ 311 (851)
++.++|..++...
T Consensus 317 ~a~~~~~~~l~~~ 329 (338)
T 2if4_A 317 KQKEMYKGIFKGK 329 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHhhCCC
Confidence 5555666555443
No 192
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.28 E-value=1.6e-06 Score=77.27 Aligned_cols=90 Identities=14% Similarity=0.122 Sum_probs=59.8
Q ss_pred cCChhHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 038852 152 AKRYDDAVALFKYFFDQADI-VPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEA 230 (851)
Q Consensus 152 ~g~~~~A~~l~~~~~~~~~~-~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A 230 (851)
.|++++|+..|+++++.... ..+..+|..++.+|...|++++|++.|+++++.++. +..++..++.+|...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN--HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHcCCHHHH
Confidence 56777777777777653100 123456777777777777777777777777777665 566777777777777777777
Q ss_pred HHHHHHHHhcCCC
Q 038852 231 VDLLRDMLSRQLG 243 (851)
Q Consensus 231 ~~l~~~m~~~g~~ 243 (851)
++.|+++++....
T Consensus 81 ~~~~~~al~~~p~ 93 (117)
T 3k9i_A 81 VELLLKIIAETSD 93 (117)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCC
Confidence 7777777766433
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.26 E-value=1.8e-06 Score=93.14 Aligned_cols=150 Identities=10% Similarity=0.024 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLIS 254 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~ 254 (851)
...|..++..|.+.|++++|+..|+++++..+. .. .+...++++++...+. ..+|..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~---~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGD---DF-------MFQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCH---HH-------HHTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc---ch-------hhhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 345777888888999999999999998886532 11 1223344444443321 137889999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHhCCCHH
Q 038852 255 GFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEV-LLKHEKKE 333 (851)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~-~~~~g~~~ 333 (851)
+|.+.|++++|+..|+++++.+.. +...+..++.+|...|++++|++.|+++++.+.. +..++..|..+ ....+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988765 7889999999999999999999999999877643 34556656655 34456778
Q ss_pred HHHHHHHHHHHcC
Q 038852 334 EAQALFEQMLDNH 346 (851)
Q Consensus 334 ~A~~l~~~m~~~~ 346 (851)
++..+|.+|+...
T Consensus 317 ~a~~~~~~~l~~~ 329 (338)
T 2if4_A 317 KQKEMYKGIFKGK 329 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHhhCCC
Confidence 8899999988643
No 194
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.21 E-value=1.8e-06 Score=76.85 Aligned_cols=93 Identities=13% Similarity=0.043 Sum_probs=75.1
Q ss_pred HcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHH
Q 038852 116 RAGDLDAASYLARQAVFSR--IRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDE 193 (851)
Q Consensus 116 ~~g~~~~A~~l~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~ 193 (851)
..|++++|+..|++++..+ -..+..++..++.+|.+.|++++|++.|+++++..+ .+..++..++.+|...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP--NHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHcCCHHH
Confidence 3588999999999998653 133567889999999999999999999999988644 357889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCC
Q 038852 194 GMNVFRRIIETAPVGPS 210 (851)
Q Consensus 194 A~~l~~~~~~~~~~~p~ 210 (851)
|++.|+++++..+..++
T Consensus 80 A~~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 80 GVELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHhCCCcHH
Confidence 99999999998766433
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.09 E-value=2.8e-06 Score=74.21 Aligned_cols=94 Identities=14% Similarity=0.183 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC------HH
Q 038852 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGAD------SL 247 (851)
Q Consensus 174 d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd------~~ 247 (851)
+...|..++.++...|++++|++.|+++++.++. +..+|..++.+|...|++++|++.|+++++.... + ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ--NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHH
Confidence 3455667777777777777777777777777655 6667777777777777777777777777766433 3 44
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 038852 248 VYNNLISGFLNLGNLEKANELFD 270 (851)
Q Consensus 248 ~~~~Li~~~~~~g~~~~A~~~~~ 270 (851)
++..++.++...|+++.|++.|+
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHH
Confidence 55555666666665555544433
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.04 E-value=7e-05 Score=68.82 Aligned_cols=109 Identities=12% Similarity=-0.002 Sum_probs=54.1
Q ss_pred ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHH
Q 038852 154 RYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVD----AGRIGE 229 (851)
Q Consensus 154 ~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~----~g~~~~ 229 (851)
++++|+++|++..+.. .++. . |..+|...+.+++|+++|+++.+.+ +...+..|..+|.. .+++++
T Consensus 10 d~~~A~~~~~~aa~~g--~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 10 DLKKAIQYYVKACELN--EMFG--C--LSLVSNSQINKQKLFQYLSKACELN----SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHTT--CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred CHHHHHHHHHHHHcCC--CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC----CHHHHHHHHHHHHcCCCCCccHHH
Confidence 4455555555554321 1121 2 4444444455555555555555443 44455555555555 455555
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhc
Q 038852 230 AVDLLRDMLSRQLGADSLVYNNLISGFLN----LGNLEKANELFDELKQR 275 (851)
Q Consensus 230 A~~l~~~m~~~g~~pd~~~~~~Li~~~~~----~g~~~~A~~~~~~~~~~ 275 (851)
|+++|+++.+.| +...+..|..+|.. .+|+++|+++|++..+.
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 555555555543 34445555555555 45555555555555444
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.02 E-value=2.9e-05 Score=68.55 Aligned_cols=80 Identities=18% Similarity=0.236 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038852 157 DAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRD 236 (851)
Q Consensus 157 ~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~ 236 (851)
+|++.|+++++... .+...|..++.+|...|++++|+..|+++++.++. +..+|..++.+|...|++++|+..|++
T Consensus 3 ~a~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQGT--DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT--YSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45666666655322 34566667777777777777777777777766554 566677777777777777777777776
Q ss_pred HHhc
Q 038852 237 MLSR 240 (851)
Q Consensus 237 m~~~ 240 (851)
+++.
T Consensus 79 al~~ 82 (115)
T 2kat_A 79 GLAA 82 (115)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6654
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.01 E-value=5.8e-05 Score=62.90 Aligned_cols=80 Identities=20% Similarity=0.376 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038852 176 VSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISG 255 (851)
Q Consensus 176 ~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~ 255 (851)
..|..++..+...|++++|+..|+++++..+. +..+|..++.++...|++++|++.|+++++.... +..++..+..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~ 86 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 34455555555555555555555555555433 4445555555555555555555555555554333 44444444444
Q ss_pred HHh
Q 038852 256 FLN 258 (851)
Q Consensus 256 ~~~ 258 (851)
+.+
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.01 E-value=2.3e-05 Score=69.14 Aligned_cols=80 Identities=13% Similarity=0.080 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038852 193 EGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDEL 272 (851)
Q Consensus 193 ~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~ 272 (851)
+|++.|+++++.++. +...|..++.+|...|++++|++.|+++++.... +..+|..++.+|...|++++|+..|+++
T Consensus 3 ~a~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQGTD--NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 577888888887765 7788999999999999999999999999988655 7788888999999999999999999888
Q ss_pred Hhc
Q 038852 273 KQR 275 (851)
Q Consensus 273 ~~~ 275 (851)
++.
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.01 E-value=9e-05 Score=68.06 Aligned_cols=112 Identities=9% Similarity=-0.025 Sum_probs=97.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----cCChHH
Q 038852 118 GDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCD----EGKVDE 193 (851)
Q Consensus 118 g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~----~g~~~~ 193 (851)
+++++|+..|+++...+ .++ .+ |...|...+.+++|+++|++..+. -+...++.|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMF--GC--LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 57889999999999877 333 33 777777888999999999999765 378889999999998 899999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Q 038852 194 GMNVFRRIIETAPVGPSSNTYRHLTKGFVD----AGRIGEAVDLLRDMLSRQL 242 (851)
Q Consensus 194 A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~----~g~~~~A~~l~~~m~~~g~ 242 (851)
|+++|+++.+.+ +..++..|..+|.. .+++++|+++|+++.+.|.
T Consensus 80 A~~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLN----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999998875 78899999999999 8999999999999999863
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.99 E-value=4.7e-05 Score=85.66 Aligned_cols=126 Identities=13% Similarity=0.020 Sum_probs=61.9
Q ss_pred HHHcCChHHHHHHHHHHHHhC-----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCC-CC-HHHHHH
Q 038852 185 YCDEGKVDEGMNVFRRIIETA-----PVGP-SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSR-----QLG-AD-SLVYNN 251 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~-----~~~p-~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~-----g~~-pd-~~~~~~ 251 (851)
+...|++++|+.+++++++.. +..| ...+++.|+.+|...|++++|+.+++++++. |.. |+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 344555555555555554431 1111 1234555555555555555555555554431 111 11 234555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc-----CCc-c-chhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 038852 252 LISGFLNLGNLEKANELFDELKQR-----CLV-Y-DGVVNATFMEWWFNQGKDKEAMQSYKSLMER 310 (851)
Q Consensus 252 Li~~~~~~g~~~~A~~~~~~~~~~-----~~~-~-d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~ 310 (851)
|+.+|...|++++|+.+|+++++. |.. | ...+...+..++...+.+++|+.+|.++.+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666555554431 211 1 1233445555566666666666666666553
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.96 E-value=4.3e-05 Score=85.97 Aligned_cols=129 Identities=8% Similarity=0.048 Sum_probs=96.1
Q ss_pred HHHHcCChhHHHHHHHHHHHcCC--C---CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCCCC-HHHHH
Q 038852 148 AMYRAKRYDDAVALFKYFFDQAD--I---VPN-IVSYNNLINTYCDEGKVDEGMNVFRRIIET-----APVGPS-SNTYR 215 (851)
Q Consensus 148 ~~~~~g~~~~A~~l~~~~~~~~~--~---~pd-~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~-----~~~~p~-~~~~~ 215 (851)
.+...|++++|+.+++++++... + .|+ ..+++.|+.+|...|++++|+.+++++++. ++..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34568899999999888875311 1 122 457889999999999999999999888754 344444 45788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc-----CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038852 216 HLTKGFVDAGRIGEAVDLLRDMLSR-----QLG-AD-SLVYNNLISGFLNLGNLEKANELFDELKQRC 276 (851)
Q Consensus 216 ~Li~~~~~~g~~~~A~~l~~~m~~~-----g~~-pd-~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~ 276 (851)
.|+..|...|++++|+.+|+++++. |.. |+ ..+...|..++.+.+.+++|+.+|.++.+..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888752 332 11 2456677788888999999999999887643
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.96 E-value=2.7e-05 Score=72.44 Aligned_cols=86 Identities=6% Similarity=0.110 Sum_probs=49.5
Q ss_pred CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038852 153 KRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGK----------VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFV 222 (851)
Q Consensus 153 g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~----------~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~ 222 (851)
+.+++|++.|+++++..+ .+...|+.+..++...++ +++|+..|+++++.+|. +..+|..++.+|.
T Consensus 16 ~~feeA~~~~~~Ai~l~P--~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~--~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNP--LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK--KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHH
Confidence 344444444444443322 233444444444444433 45777777777777666 6667777777777
Q ss_pred HcC-----------CHHHHHHHHHHHHhcCC
Q 038852 223 DAG-----------RIGEAVDLLRDMLSRQL 242 (851)
Q Consensus 223 ~~g-----------~~~~A~~l~~~m~~~g~ 242 (851)
..| ++++|++.|+++++...
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 653 67777777777777643
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.93 E-value=2.6e-05 Score=72.57 Aligned_cols=89 Identities=8% Similarity=0.082 Sum_probs=70.1
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRI----------GEAVDLLRDMLSRQLGADSLVYNNLISG 255 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~----------~~A~~l~~~m~~~g~~pd~~~~~~Li~~ 255 (851)
.+.+.+++|++.++++++.+|. +...|+.+..++...+++ ++|+..|+++++.+.. +..+|..++.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~--~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL--DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence 4557789999999999999887 888999999999888764 5888888888888766 77888888888
Q ss_pred HHhcC-----------CHHHHHHHHHHHHhcCC
Q 038852 256 FLNLG-----------NLEKANELFDELKQRCL 277 (851)
Q Consensus 256 ~~~~g-----------~~~~A~~~~~~~~~~~~ 277 (851)
|...| ++++|++.|+++++.+.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 88775 56666666666665543
No 205
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.90 E-value=8.4e-06 Score=71.09 Aligned_cols=68 Identities=15% Similarity=0.213 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc
Q 038852 210 SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLV 278 (851)
Q Consensus 210 ~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~ 278 (851)
+...|..++..+...|++++|++.|+++++.... +..+|..++.+|.+.|++++|++.|+++++....
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 4557788888888888888888888888887655 7788888888888888888888888888876544
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.88 E-value=0.00014 Score=60.39 Aligned_cols=84 Identities=20% Similarity=0.387 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038852 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHL 217 (851)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~L 217 (851)
+...|..+...+...|++++|++.|+++++... .+..+|..++.+|...|++++|++.|+++++.++. +..++..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~l 83 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--CHHHHHHH
Confidence 346778888889999999999999999987643 36778899999999999999999999999998766 77788888
Q ss_pred HHHHHHcC
Q 038852 218 TKGFVDAG 225 (851)
Q Consensus 218 i~~~~~~g 225 (851)
..++...|
T Consensus 84 ~~~~~~~g 91 (91)
T 1na3_A 84 GNAKQKQG 91 (91)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 87776544
No 207
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.76 E-value=3.4e-09 Score=113.32 Aligned_cols=271 Identities=11% Similarity=0.051 Sum_probs=173.1
Q ss_pred CCCccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHH
Q 038852 102 GPRLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNL 181 (851)
Q Consensus 102 ~~~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~L 181 (851)
+....+..+.++.+..+++.+|++.|-+ ..|...|..+|.+..+.|.+++-++.+..+.+. ..+...=+.|
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~---~ke~~IDteL 122 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETEL 122 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---CCSTTTTHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccHHHH
Confidence 3345566777777777777776654321 235556777888777888888888777655322 2233444577
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 038852 182 INTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGN 261 (851)
Q Consensus 182 i~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~ 261 (851)
+.+|++.+++.+-.+++ ..||..-...+++-|...|.++.|.-+|..+- -|..|..++.++|+
T Consensus 123 i~ayAk~~rL~elEefl--------~~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~ 185 (624)
T 3lvg_A 123 IFALAKTNRLAELEEFI--------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGE 185 (624)
T ss_dssp HHHHHTSCSSSTTTSTT--------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSG
T ss_pred HHHHHhhCcHHHHHHHH--------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHH
Confidence 77888888766544333 12344445667777778888877776665432 24456667777788
Q ss_pred HHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 038852 262 LEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQ 341 (851)
Q Consensus 262 ~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~ 341 (851)
+..|.+.-+++ -+..+|..+..+|...+++..|..+--.++-..- -...|+..|...|.+++.+.+++.
T Consensus 186 yq~AVdaArKA------ns~ktWKeV~~ACvd~~EfrLAqicGLniIvhad-----eL~elv~~YE~~G~f~ELIsLlEa 254 (624)
T 3lvg_A 186 YQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD-----ELEELINYYQDRGYFEELITMLEA 254 (624)
T ss_dssp GGSSTTTTTTC------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSS-----CCSGGGSSSSTTCCCTTSTTTHHH
T ss_pred HHHHHHHHHhc------CChhHHHHHHHHHhCchHHHHHHHhcchhcccHH-----HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 77776543322 2667888888999999998887666544443221 223467788899999999999998
Q ss_pred HHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCC---CCccCHHHHHHHHHHHHhcCCHHHHHH
Q 038852 342 MLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSK---PFAMDVAGYNNIIARYCENEMLEEAEK 416 (851)
Q Consensus 342 m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~d~~~~~~li~~~~~~g~~~~A~~ 416 (851)
.+..... ....|+.|+..|++- +.++.++.++..-...... ...-....|..++-.|++-.++|.|..
T Consensus 255 glglErA------HmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 255 ALGLERA------HMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HTTSTTC------CHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HhCCCch------hHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 8743222 678999999999876 4555555555432211111 011234457777778888888876654
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.75 E-value=9.5e-05 Score=63.51 Aligned_cols=63 Identities=21% Similarity=0.311 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 038852 175 IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLS 239 (851)
Q Consensus 175 ~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~ 239 (851)
...|..++.+|...|++++|++.|+++++.++. +..+|..++.+|...|++++|++.|+++++
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD--YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444444455555555555555555444433 333444455555555555555555544443
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.71 E-value=0.00014 Score=62.33 Aligned_cols=65 Identities=20% Similarity=0.307 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 038852 138 TVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIET 204 (851)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~ 204 (851)
+...+..++.+|.+.|++++|++.|+++++... .+...|..++.+|...|++++|++.|+++++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP--DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456666666667777777777777777666533 23455666677777777777777777766654
No 210
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.69 E-value=0.13 Score=61.09 Aligned_cols=278 Identities=11% Similarity=0.048 Sum_probs=158.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcC--CccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-------CCCHHHHHHHH
Q 038852 253 ISGFLNLGNLEKANELFDELKQRC--LVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNF-------RMTPATCNTLL 323 (851)
Q Consensus 253 i~~~~~~g~~~~A~~~~~~~~~~~--~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-------~~~~~~~~~Li 323 (851)
.-+....|+.++++.+++..+..+ -.+....-..++-+....|..+++++++...+..+- ......-..|.
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 334566788888888887766532 111233334445556666766778888877765432 01112223333
Q ss_pred HHHHhCCC-HHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHH
Q 038852 324 EVLLKHEK-KEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNII 402 (851)
Q Consensus 324 ~~~~~~g~-~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li 402 (851)
-+++..|. -+++.+.+..++..... . ....+-..|+.+|+..|+-+....++..+.+.... ++.-...+.
T Consensus 461 LGla~~GS~~eev~e~L~~~L~dd~~--~--~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e-----~vrR~aalg 531 (963)
T 4ady_A 461 IGLAAMGSANIEVYEALKEVLYNDSA--T--SGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHG-----NITRGLAVG 531 (963)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHTCCH--H--HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCH-----HHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHhcCCH--H--HHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcH-----HHHHHHHHH
Confidence 33433343 24667777776653210 0 01123345555666778877777777776543211 333344455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHc
Q 038852 403 ARYCENEMLEEAEKLLREISTKSLSPDVT-TF---RTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITK 478 (851)
Q Consensus 403 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-~~---~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~ 478 (851)
-++...|+.+.+..+++.+... .|.. -| .+++.+|+..|+.....+++..+.+.. ..++.-...+..+++..
T Consensus 532 LGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~ 607 (963)
T 4ady_A 532 LALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLL 607 (963)
T ss_dssp HHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTS
T ss_pred HHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhcc
Confidence 5556788988888888888764 2332 22 345667888999887777998888653 33444444555566667
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 038852 479 GKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGL-FDMSKDIVDQMMKYGVGITPALQDFVRETFGK 547 (851)
Q Consensus 479 g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~ 547 (851)
|+.+.+.++++.+.+.+ .+....-..+.-+....|. ..++++++..+.. ..+..+....+.+++.
T Consensus 608 g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 608 RDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSM 673 (963)
T ss_dssp SSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHH
Confidence 88777777777666543 2222222233333333443 3678888888875 2455555544444443
No 211
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.67 E-value=0.0024 Score=77.05 Aligned_cols=152 Identities=14% Similarity=0.127 Sum_probs=86.7
Q ss_pred HHHcCCHHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHc
Q 038852 291 WFNQGKDKEAMQ-SYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKH 369 (851)
Q Consensus 291 ~~~~g~~~~A~~-l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~ 369 (851)
....+++++|.+ ++..+. +......++..+.+.|..++|+++.+. ... -.......
T Consensus 609 ~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~--------------~~~---~f~~~l~~ 665 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPD--------------QDQ---KFELALKV 665 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCC--------------HHH---HHHHHHHH
T ss_pred HHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCC--------------cch---heehhhhc
Confidence 445666666665 441111 012225566667777777777765531 111 12334567
Q ss_pred CChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 038852 370 GKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDA 449 (851)
Q Consensus 370 g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A 449 (851)
|++++|+++.+.+. +...|..|+..+.+.++++.|+++|.++.. |..+...|...|+.+..
T Consensus 666 ~~~~~A~~~~~~~~----------~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~ 726 (814)
T 3mkq_A 666 GQLTLARDLLTDES----------AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGL 726 (814)
T ss_dssp TCHHHHHHHHTTCC----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHhhC----------cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHH
Confidence 78888877765441 566788888888888888888888776642 34455555556666665
Q ss_pred HHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHH
Q 038852 450 LELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTK 490 (851)
Q Consensus 450 ~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~ 490 (851)
.++.+.+...|. ++....+|.+.|++++|+++|.+
T Consensus 727 ~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 727 VTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 555555544431 12233445556666666555443
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.59 E-value=0.002 Score=77.70 Aligned_cols=98 Identities=16% Similarity=0.131 Sum_probs=59.2
Q ss_pred HHcCChhHHHH-HHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 038852 150 YRAKRYDDAVA-LFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIG 228 (851)
Q Consensus 150 ~~~g~~~~A~~-l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~ 228 (851)
...+++++|.+ ++..+ ++......++..+.+.|..++|+++.+... .-.......|+++
T Consensus 610 ~~~~~~~~a~~~~l~~i-------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~-------------~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV-------EGKDSLTKIARFLEGQEYYEEALNISPDQD-------------QKFELALKVGQLT 669 (814)
T ss_dssp HHTTCHHHHHHHTGGGC-------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH-------------HHHHHHHHHTCHH
T ss_pred HHhCCHHHHHHHHHhcC-------CchHHHHHHHHHHHhCCChHHheecCCCcc-------------hheehhhhcCCHH
Confidence 35677777766 44221 112223666666777777777776553221 1123345677777
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038852 229 EAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELK 273 (851)
Q Consensus 229 ~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~ 273 (851)
+|+++.+.+ . +...|..|+..+.+.++++.|+++|.++.
T Consensus 670 ~A~~~~~~~-----~-~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 670 LARDLLTDE-----S-AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHHTTC-----C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHhh-----C-cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 777765432 2 56777777777777777777777776653
No 213
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.54 E-value=0.0057 Score=62.27 Aligned_cols=108 Identities=12% Similarity=0.122 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHH-cCCH
Q 038852 411 LEEAEKLLREISTKSLSPD---VTTFRTLIDAYLKV-----ERIDDALELFNRMVESGLRVVVSFGTKVFNELIT-KGKV 481 (851)
Q Consensus 411 ~~~A~~l~~~m~~~g~~pd---~~~~~~Ll~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~-~g~~ 481 (851)
...|..+++++++. .|+ ...|..|+..|.+. |+.++|.++|+++++.+..-+...+..+...|+. .|+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 56788888888865 455 46889999999884 9999999999999998765445555557777777 4999
Q ss_pred HHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038852 482 AECAPILTKMGEKDPK--PDFLIYDVVVRGLCNEGLFDMSKDIVDQMMK 528 (851)
Q Consensus 482 ~~A~~ll~~m~~~~~~--pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~ 528 (851)
+++.+++++.+..... |+....+.+.+ ++|..+++++.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~~q--------~eA~~LL~~~~d 297 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVILSQ--------KRARWLKAHVQD 297 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHHHH--------HHHHHHHHTHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHHHH--------HHHHHHHHHhHH
Confidence 9999999999988776 66555444432 556666555443
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.44 E-value=0.00036 Score=59.28 Aligned_cols=58 Identities=14% Similarity=0.409 Sum_probs=28.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 038852 182 INTYCDEGKVDEGMNVFRRIIETAPVGPSSN-TYRHLTKGFVDAGRIGEAVDLLRDMLSRQ 241 (851)
Q Consensus 182 i~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~-~~~~Li~~~~~~g~~~~A~~l~~~m~~~g 241 (851)
+..+...|++++|++.|+++++.++. +.. .|..++.+|...|++++|++.|+++++..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPV--GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSS--THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 33444455555555555555554433 444 45555555555555555555555555443
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.41 E-value=0.0023 Score=68.00 Aligned_cols=118 Identities=10% Similarity=0.099 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---C--CHHH--H-HHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCC
Q 038852 191 VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDA---G--RIGE--A-VDLLRDMLS-RQLGADSLVYNNLISGFLNLGN 261 (851)
Q Consensus 191 ~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~---g--~~~~--A-~~l~~~m~~-~g~~pd~~~~~~Li~~~~~~g~ 261 (851)
+.+|+.+|+++++.+|. ....|..+..+|... + .-.. + ...++.... .....+..+|..+...+...|+
T Consensus 215 ~~~A~~l~e~Al~lDP~--~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd 292 (372)
T 3ly7_A 215 LNRASELLGEIVQSSPE--FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGK 292 (372)
T ss_dssp HHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCC
Confidence 46788888888888776 556666555555421 1 1011 1 111111111 1123367777777777777788
Q ss_pred HHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 038852 262 LEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNF 312 (851)
Q Consensus 262 ~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~ 312 (851)
+++|+..+++++..+ ++...|..+..++...|++++|++.|++++..++
T Consensus 293 ~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 293 TDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 888888888888876 4566667777778888888888888888887765
No 216
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.36 E-value=0.0044 Score=63.09 Aligned_cols=88 Identities=15% Similarity=0.069 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHH
Q 038852 191 VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDA-----GRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL-GNLEK 264 (851)
Q Consensus 191 ~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~-g~~~~ 264 (851)
...|..+++++++.++.-.+...|..|+..|... |+.++|.++|+++++.+..-+..++...++.++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 3456666666666554433344566666666663 66666666666666655433355555566666553 66666
Q ss_pred HHHHHHHHHhcCCc
Q 038852 265 ANELFDELKQRCLV 278 (851)
Q Consensus 265 A~~~~~~~~~~~~~ 278 (851)
|.+.+++++.....
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 66666666665544
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.31 E-value=0.00065 Score=57.62 Aligned_cols=61 Identities=18% Similarity=0.288 Sum_probs=40.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 038852 145 IIAAMYRAKRYDDAVALFKYFFDQADIVPNIV-SYNNLINTYCDEGKVDEGMNVFRRIIETAPV 207 (851)
Q Consensus 145 li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~-~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~ 207 (851)
.+..+.+.|++++|++.|+++++... .+.. .|..++.+|...|++++|++.|+++++.++.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEP--VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCS--STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 34455667777777777777766432 2455 6777777777777777777777777776655
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.30 E-value=0.0029 Score=67.15 Aligned_cols=134 Identities=13% Similarity=0.076 Sum_probs=90.6
Q ss_pred CHHHHHHHHHH--HHHcC---CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---C--C---HHHHHHHHHHHHhc-
Q 038852 210 SSNTYRHLTKG--FVDAG---RIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL---G--N---LEKANELFDELKQR- 275 (851)
Q Consensus 210 ~~~~~~~Li~~--~~~~g---~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~---g--~---~~~A~~~~~~~~~~- 275 (851)
+..+|...+++ +...+ ++.+|+++|+++++..+. ....|..+..+|... + . .+.....++.....
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~ 271 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP 271 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc
Confidence 44455554443 33333 458999999999998766 666776666655421 1 1 11111122221111
Q ss_pred CCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 038852 276 CLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNH 346 (851)
Q Consensus 276 ~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~ 346 (851)
....+..++..+...+...|++++|+..+++++..+ ++...|..+..++...|++++|++.|++++..+
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 123367778888777888899999999999999987 567778888899999999999999999998853
No 219
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.21 Score=58.30 Aligned_cols=127 Identities=14% Similarity=0.093 Sum_probs=77.6
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhc------CCc-cc-----
Q 038852 215 RHLTKGFVDAGR-IGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLG-NLEKANELFDELKQR------CLV-YD----- 280 (851)
Q Consensus 215 ~~Li~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g-~~~~A~~~~~~~~~~------~~~-~d----- 280 (851)
..|++.+...++ ++.|+++|+++.+.....+......++..+...+ +--+|..++.+.++. ... .+
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 344555555655 6889999999888754422222233333333333 233455666555431 110 01
Q ss_pred -----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 038852 281 -----GVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQM 342 (851)
Q Consensus 281 -----~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m 342 (851)
..+...-++.+...|+++.|+++-+++....+ .+-.+|..|+.+|...|+++.|+-.+..+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11222334556778888888888888877653 45678888888888888888888888776
No 220
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.25 E-value=1.6e-06 Score=93.13 Aligned_cols=221 Identities=12% Similarity=0.072 Sum_probs=136.2
Q ss_pred ccCCCccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHH
Q 038852 100 LVGPRLNLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYN 179 (851)
Q Consensus 100 ~~~~~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~ 179 (851)
.+.+..++...+....+.|.+++-+..+..+.+.... ..+=+.|+-+|++.+++.+-.+++. .+|+.-..
T Consensus 79 kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke--~~IDteLi~ayAk~~rL~elEefl~--------~~N~A~iq 148 (624)
T 3lvg_A 79 KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE--SYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQ 148 (624)
T ss_dssp CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCS--TTTTHHHHHHHHTSCSSSTTTSTTS--------CCSSSCTH
T ss_pred hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc--cccHHHHHHHHHhhCcHHHHHHHHc--------CCCcccHH
Confidence 3455677889999999999999999888776654333 3334578888998888776444432 14544456
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhC-------------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 038852 180 NLINTYCDEGKVDEGMNVFRRIIETA-------------------PVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSR 240 (851)
Q Consensus 180 ~Li~~~~~~g~~~~A~~l~~~~~~~~-------------------~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 240 (851)
.+++-|...|.++.|.-+|..+..-. ...-+..||..+-.+|+..+.+..|--+--.++-.
T Consensus 149 ~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh 228 (624)
T 3lvg_A 149 QVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH 228 (624)
T ss_dssp HHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC
T ss_pred HHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc
Confidence 67777777777777766665442110 01124557888888888888777766554444422
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCCC-----
Q 038852 241 QLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLME-RNFRM----- 314 (851)
Q Consensus 241 g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~-~~~~~----- 314 (851)
. .-...|+..|-..|.+++-+.+++..+..... ..-+++.|+-.|.|-. .++..+.++.... .++.-
T Consensus 229 a-----deL~elv~~YE~~G~f~ELIsLlEaglglErA-HmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKvirac 301 (624)
T 3lvg_A 229 A-----DELEELINYYQDRGYFEELITMLEAALGLERA-HMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAA 301 (624)
T ss_dssp S-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTC-CHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHH
T ss_pred H-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHH
Confidence 1 11234666777788888888888777643222 5667777777777653 2333333222111 11110
Q ss_pred -CHHHHHHHHHHHHhCCCHHHHHH
Q 038852 315 -TPATCNTLLEVLLKHEKKEEAQA 337 (851)
Q Consensus 315 -~~~~~~~Li~~~~~~g~~~~A~~ 337 (851)
....|..++..|+...+++.|..
T Consensus 302 E~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 302 EQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhhHHHHHHHHhcchhHHHHHH
Confidence 12457778888888888887654
No 221
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.031 Score=65.25 Aligned_cols=129 Identities=15% Similarity=0.137 Sum_probs=85.0
Q ss_pred HHHHHHHHHH-cCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHc-----CCC-CCCH--
Q 038852 107 LHNRVQSLIR-AGD-LDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKR-YDDAVALFKYFFDQ-----ADI-VPNI-- 175 (851)
Q Consensus 107 l~~ll~~l~~-~g~-~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~~~~~-----~~~-~pd~-- 175 (851)
|...+..++. .++ ++.|+.+|+++......-+......++..+...++ --+|+.++.+.++. ... ..+.
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 3344444444 455 58899999998876543333333344443333332 23566666665431 011 1121
Q ss_pred --------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038852 176 --------VSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDM 237 (851)
Q Consensus 176 --------~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m 237 (851)
...+.-++.|...|+++.|+++.+++....|. +-.+|..|+.+|+..|+++.|+-.++.+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs--eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD--SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS--CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch--hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 12233355677889999999999999998877 8899999999999999999999998876
No 222
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.24 E-value=0.37 Score=57.26 Aligned_cols=263 Identities=11% Similarity=0.031 Sum_probs=136.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCCCCccCH--HHHHHHHH
Q 038852 291 WFNQGKDKEAMQSYKSLMERNFRMTP--ATCNTLLEVLLKHEKKEEAQALFEQMLDNHQ--PPNIQAVNS--DTFNIMVN 364 (851)
Q Consensus 291 ~~~~g~~~~A~~l~~~~~~~~~~~~~--~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~--~p~~~~~~~--~~~~~L~~ 364 (851)
....|+.++++.+++..+..+...+. ..-..++-++...|..+++++++...+...- .-+...... .+...|+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 44566777777777665542111121 2233344455566666678888877765321 000000001 12223333
Q ss_pred HHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 038852 365 ECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVE 444 (851)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g 444 (851)
+|...++ +++.+.+..+...... . .....-..|+..|+-.|+-+....++..+.+. ..-+..-...++-++...|
T Consensus 464 a~~GS~~-eev~e~L~~~L~dd~~--~-~~~~AalALGli~vGTgn~~ai~~LL~~~~e~-~~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 464 AAMGSAN-IEVYEALKEVLYNDSA--T-SGEAAALGMGLCMLGTGKPEAIHDMFTYSQET-QHGNITRGLAVGLALINYG 538 (963)
T ss_dssp HSTTCCC-HHHHHHHHHHHHTCCH--H-HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTT
T ss_pred HhcCCCC-HHHHHHHHHHHhcCCH--H-HHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc-CcHHHHHHHHHHHHhhhCC
Confidence 3333343 4566666665543211 0 00112223444455678888888888877664 1112223334444555678
Q ss_pred CHHHHHHHHHHHHHcCCccchhHHH--HHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 038852 445 RIDDALELFNRMVESGLRVVVSFGT--KVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDI 522 (851)
Q Consensus 445 ~~~~A~~~~~~m~~~~~~~~~~~~~--~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~ 522 (851)
+.+.+..+++.+.... .+...+.. .+..+|+..|+.....+++..+.+.. ..+..-...+.-++...|+.+.+.++
T Consensus 539 ~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 539 RQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp CGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred ChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 8888888888777642 33333332 34556778889887777998888652 11222233333344556776667777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHH--HhcCCH-HHHHHHHHhhhh
Q 038852 523 VDQMMKYGVGITPALQDFVRETF--GKAGRG-EEIERVLNADRW 563 (851)
Q Consensus 523 ~~~m~~~g~~~~~~~~~~L~~~~--~~~G~~-~eA~~ll~~~~~ 563 (851)
++.+.+.+ ++.+....+.++ .-+|+. .+|++++..+..
T Consensus 617 v~~L~~~~---d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 617 VQLLSKSH---NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTTGGGCS---CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHhcC---CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 76555532 444444433333 334442 566767766653
No 223
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.21 E-value=0.51 Score=54.10 Aligned_cols=403 Identities=10% Similarity=0.008 Sum_probs=200.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN-IVSYNNLINTY 185 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd-~~~~~~Li~~~ 185 (851)
.+..+...++.|+++.+..+...+.. ..-..-..|..|...+ .....++...++++. .-.|- ...-+..+..+
T Consensus 9 ~~~~a~~a~~~~~~~~~~~l~~~l~~-~pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~----~~~p~~~~Lr~~~l~~l 82 (618)
T 1qsa_A 9 RYAQIKQAWDNRQMDVVEQMMPGLKD-YPLYPYLEYRQITDDL-MNQPAVTVTNFVRAN----PTLPPARTLQSRFVNEL 82 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHSGGGTT-STTHHHHHHHHHHHTG-GGCCHHHHHHHHHHC----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhcC-CCcHHHHHHHHHHhCc-ccCCHHHHHHHHHHC----CCChhHHHHHHHHHHHH
Confidence 34556778888999888777655421 1111112232222111 122455555555432 21121 12234455666
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH-
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEK- 264 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~- 264 (851)
.+.+++...+.++.. .+. +...-..++.+....|+..+|....+++-..|.. ....+..|+..+.+.|.+..
T Consensus 83 ~~~~~w~~~l~~~~~----~p~--~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~lt~~ 155 (618)
T 1qsa_A 83 ARREDWRGLLAFSPE----KPG--TTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQDPL 155 (618)
T ss_dssp HHTTCHHHHHHHCCS----CCS--SHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCSCHH
T ss_pred HhCCCHHHHHHhccC----CCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCCCHH
Confidence 778888877665543 122 5556666777888889988888877777666543 34456667777666554432
Q ss_pred -HHHHHHHHHhcCCc-----------cch-hhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHh
Q 038852 265 -ANELFDELKQRCLV-----------YDG-VVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPA---TCNTLLEVLLK 328 (851)
Q Consensus 265 -A~~~~~~~~~~~~~-----------~d~-~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~---~~~~Li~~~~~ 328 (851)
...-++.+...+-. .+. .....++.++.+-.++ ...... +.++.. .+...+.-+.+
T Consensus 156 ~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~-----~~~~~~~~~~~~~~~~rlar 227 (618)
T 1qsa_A 156 AYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFART-----TGATDFTRQMAAVAFASVAR 227 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHH-----SCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhc-----cCCChhhHHHHHHHHHHHHh
Confidence 22222222222211 011 1111111111111111 111100 111111 11112222333
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCCccCHHHH----HHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHH
Q 038852 329 HEKKEEAQALFEQMLDNHQPPNIQAVNSDTF----NIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIAR 404 (851)
Q Consensus 329 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~----~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~ 404 (851)
.+.+.|..+|....+.... +.... ..++..+...+...++...+.+...... +.....-.+..
T Consensus 228 -~d~~~A~~~~~~~~~~~~~------~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~e~~~r~ 294 (618)
T 1qsa_A 228 -QDAENARLMIPSLAQAQQL------NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ------STSLIERRVRM 294 (618)
T ss_dssp -HCHHHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC------CHHHHHHHHHH
T ss_pred -cCHHHHHHHHHhhhhccCC------CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC------ChHHHHHHHHH
Confidence 3778899999887654322 22222 2233333334435677777777654322 22223334444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHH
Q 038852 405 YCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAEC 484 (851)
Q Consensus 405 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A 484 (851)
..+.|+++.|...|+.|..... .......-++.++...|+.++|..+|.++... ..+|..+. ..+.|..-.
T Consensus 295 Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~-----~~fYg~lA--a~~Lg~~~~- 365 (618)
T 1qsa_A 295 ALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQ-----RGFYPMVA--AQRIGEEYE- 365 (618)
T ss_dssp HHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----CSHHHHHH--HHHTTCCCC-
T ss_pred HHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CChHHHHH--HHHcCCCCC-
Confidence 5577999999999988865322 23444556777888899999999999998752 13444232 122221000
Q ss_pred HHHHHHHhhCCC-CCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 485 APILTKMGEKDP-KPDFL---IYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLN 559 (851)
Q Consensus 485 ~~ll~~m~~~~~-~pd~~---~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~ 559 (851)
. ....... ..... .....+..+...|....|...+..+.+. .+......+..+....|..+.++....
T Consensus 366 ~----~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 366 L----KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp C----CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred C----CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 0 0000000 00000 1112344566677777777777766653 234444455666666677766655443
No 224
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.14 E-value=0.0015 Score=72.14 Aligned_cols=88 Identities=6% Similarity=0.054 Sum_probs=51.0
Q ss_pred cCChhHHHHHHHHHHHcC--CCCC---C-HHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCCCC-HHHHHHHHH
Q 038852 152 AKRYDDAVALFKYFFDQA--DIVP---N-IVSYNNLINTYCDEGKVDEGMNVFRRIIET-----APVGPS-SNTYRHLTK 219 (851)
Q Consensus 152 ~g~~~~A~~l~~~~~~~~--~~~p---d-~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~-----~~~~p~-~~~~~~Li~ 219 (851)
.|++++|+.++++.++.. -+.+ + ..+++.|+.+|...|++++|+.+++++++. ++..|+ ..+|+.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 356777777777765421 1111 1 346667777777777777777777766543 222232 234666666
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 038852 220 GFVDAGRIGEAVDLLRDMLS 239 (851)
Q Consensus 220 ~~~~~g~~~~A~~l~~~m~~ 239 (851)
.|...|++++|+.+|+++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 66666666666666665554
No 225
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.14 E-value=0.0034 Score=69.32 Aligned_cols=90 Identities=10% Similarity=0.008 Sum_probs=44.4
Q ss_pred HHHcCChHHHHHHHHHHHHhC-----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCC-CC-HHHHHH
Q 038852 185 YCDEGKVDEGMNVFRRIIETA-----PVGP-SSNTYRHLTKGFVDAGRIGEAVDLLRDMLSR-----QLG-AD-SLVYNN 251 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~-----~~~p-~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~-----g~~-pd-~~~~~~ 251 (851)
+...|++++|+++++++++.. +..| ...+++.|+.+|...|++++|+.+++++++. |.. |+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 344455555555555554321 1111 1234555555555555555555555555431 111 11 244555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 038852 252 LISGFLNLGNLEKANELFDELKQ 274 (851)
Q Consensus 252 Li~~~~~~g~~~~A~~~~~~~~~ 274 (851)
|+..|...|++++|+.+|+++++
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 66666666666666666665543
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.11 E-value=0.027 Score=53.00 Aligned_cols=134 Identities=14% Similarity=0.103 Sum_probs=92.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 038852 107 LHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYC 186 (851)
Q Consensus 107 l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~ 186 (851)
-.......+..|+++.|.++.+.+ .+...|..|.....+.|+++-|+++|.++- | +..|.-.|.
T Consensus 8 ~~~rF~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-------D---~~~L~~Ly~ 71 (177)
T 3mkq_B 8 PHIRFDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH-------S---FDKLSFLYL 71 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-------C---HHHHHHHHH
T ss_pred hHHHHHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-------C---HHHHHHHHH
Confidence 345677788889999998887765 357789999999999999999999998761 3 455555677
Q ss_pred HcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038852 187 DEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKAN 266 (851)
Q Consensus 187 ~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~ 266 (851)
..|+.+.-.++-+.....+ -++....++...|++++++++|.+.-+. + ..+......|..+.|.
T Consensus 72 ~tg~~e~L~kla~iA~~~g-------~~n~af~~~l~lGdv~~~i~lL~~~~r~----~-----eA~~~A~t~g~~~~a~ 135 (177)
T 3mkq_B 72 VTGDVNKLSKMQNIAQTRE-------DFGSMLLNTFYNNSTKERSSIFAEGGSL----P-----LAYAVAKANGDEAAAS 135 (177)
T ss_dssp HHTCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHTCHHHHHHHHHHTTCH----H-----HHHHHHHHTTCHHHHH
T ss_pred HhCCHHHHHHHHHHHHHCc-------cHHHHHHHHHHcCCHHHHHHHHHHCCCh----H-----HHHHHHHHcCcHHHHH
Confidence 7788877776666655443 2556666777888999998888654321 1 1111122246667777
Q ss_pred HHHHHH
Q 038852 267 ELFDEL 272 (851)
Q Consensus 267 ~~~~~~ 272 (851)
++.+.+
T Consensus 136 ~~~~~~ 141 (177)
T 3mkq_B 136 AFLEQA 141 (177)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 776654
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.98 E-value=0.098 Score=46.09 Aligned_cols=141 Identities=14% Similarity=0.097 Sum_probs=98.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcC
Q 038852 291 WFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHG 370 (851)
Q Consensus 291 ~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g 370 (851)
+.-.|..++..++..+..... +..-||.+|--....-+-+...++++.+-+. + |. ..+|
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-F-------Di----------s~C~ 75 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F-------DL----------DKCQ 75 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S-------CG----------GGCS
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh-c-------Cc----------Hhhh
Confidence 344677777777777776553 2345666666666666666666666665432 1 11 1566
Q ss_pred ChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 038852 371 KFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDAL 450 (851)
Q Consensus 371 ~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~ 450 (851)
++...+..|-.+.. +.......++.+...|+.|.-.+++.+++. +..++......+..+|.+.|+..+|.
T Consensus 76 NlKrVi~C~~~~n~---------~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~ 145 (172)
T 1wy6_A 76 NLKSVVECGVINNT---------LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDAT 145 (172)
T ss_dssp CTHHHHHHHHHTTC---------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHhcc---------hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHH
Confidence 77777777766632 455566777888889999999999888655 35667888888999999999999999
Q ss_pred HHHHHHHHcCCc
Q 038852 451 ELFNRMVESGLR 462 (851)
Q Consensus 451 ~~~~~m~~~~~~ 462 (851)
+++.++.+.|++
T Consensus 146 eLl~~AC~kG~k 157 (172)
T 1wy6_A 146 TLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHTTCH
T ss_pred HHHHHHHHhhhH
Confidence 999999888864
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.97 E-value=0.0058 Score=52.59 Aligned_cols=71 Identities=15% Similarity=0.275 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 038852 137 PTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQAD-----IVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPV 207 (851)
Q Consensus 137 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-----~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~ 207 (851)
.+...|..|+..+.+.|+|+.|+..|+.+++... -.....++..|+.+|.+.|++++|+.+++++++..|.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 3455666777777778888888888777765421 1123556777777777777777777777777776655
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.054 Score=50.90 Aligned_cols=15 Identities=13% Similarity=0.200 Sum_probs=9.5
Q ss_pred cCCHHHHHHHHHhhh
Q 038852 548 AGRGEEIERVLNADR 562 (851)
Q Consensus 548 ~G~~~eA~~ll~~~~ 562 (851)
.|..+.|.++.+.+-
T Consensus 128 ~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 128 NGDEAAASAFLEQAE 142 (177)
T ss_dssp TTCHHHHHHHHHHTT
T ss_pred cCcHHHHHHHHHHhC
Confidence 456667777776653
No 230
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.85 E-value=0.078 Score=46.71 Aligned_cols=144 Identities=10% Similarity=0.040 Sum_probs=98.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC
Q 038852 111 VQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGK 190 (851)
Q Consensus 111 l~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~ 190 (851)
++.++-.|..++..++..+..... +..-||.+|--....-+-+-..++++.+-+.. | ...+|+
T Consensus 14 AK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF----D----------is~C~N 76 (172)
T 1wy6_A 14 AKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYF----D----------LDKCQN 76 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS----C----------GGGCSC
T ss_pred HHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhc----C----------cHhhhc
Confidence 445667788888888888877654 56677777776667777777777776653221 1 134556
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 191 VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFD 270 (851)
Q Consensus 191 ~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~ 270 (851)
+...+..|-.+- . +.......+..+...|+-+.-.+++.+++.. ..++......+..+|.+.|+..+|.+++.
T Consensus 77 lKrVi~C~~~~n----~--~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 77 LKSVVECGVINN----T--LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp THHHHHHHHHTT----C--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhc----c--hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 665555554431 1 3445566677777888888888888886553 34577778888888888888888888888
Q ss_pred HHHhcCCc
Q 038852 271 ELKQRCLV 278 (851)
Q Consensus 271 ~~~~~~~~ 278 (851)
++-++|++
T Consensus 150 ~AC~kG~k 157 (172)
T 1wy6_A 150 EACKKGEK 157 (172)
T ss_dssp HHHHTTCH
T ss_pred HHHHhhhH
Confidence 88877765
No 231
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.84 E-value=0.0058 Score=67.47 Aligned_cols=95 Identities=13% Similarity=0.159 Sum_probs=75.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCC--CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCCCC-HHH
Q 038852 146 IAAMYRAKRYDDAVALFKYFFDQAD--IVPN----IVSYNNLINTYCDEGKVDEGMNVFRRIIET-----APVGPS-SNT 213 (851)
Q Consensus 146 i~~~~~~g~~~~A~~l~~~~~~~~~--~~pd----~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~-----~~~~p~-~~~ 213 (851)
+..+.+.|++++|+++++++++... +.++ ..+++.|+.+|...|++++|+.+++++++. ++..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 4456678999999999999876421 1222 458899999999999999999999988754 344444 357
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 038852 214 YRHLTKGFVDAGRIGEAVDLLRDMLSR 240 (851)
Q Consensus 214 ~~~Li~~~~~~g~~~~A~~l~~~m~~~ 240 (851)
++.|+..|...|++++|+.+|+++++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 899999999999999999999998763
No 232
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.83 E-value=0.0058 Score=67.43 Aligned_cols=89 Identities=7% Similarity=0.013 Sum_probs=71.2
Q ss_pred HcCCHHHHHHHHHHHHHcC---CCC---C-HHHHHHHHHHHHHcCChhHHHHHHHHHHHc----CC-CCCC-HHHHHHHH
Q 038852 116 RAGDLDAASYLARQAVFSR---IRP---T-VFTCNAIIAAMYRAKRYDDAVALFKYFFDQ----AD-IVPN-IVSYNNLI 182 (851)
Q Consensus 116 ~~g~~~~A~~l~~~~~~~~---~~~---~-~~~~~~li~~~~~~g~~~~A~~l~~~~~~~----~~-~~pd-~~~~~~Li 182 (851)
..|++++|+.++++++... ..+ + ..+++.|+.+|...|+|++|+.+++++++. .| ..|+ ..+|+.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3578999999999987632 122 2 467999999999999999999999998753 22 2333 45799999
Q ss_pred HHHHHcCChHHHHHHHHHHHHh
Q 038852 183 NTYCDEGKVDEGMNVFRRIIET 204 (851)
Q Consensus 183 ~~~~~~g~~~~A~~l~~~~~~~ 204 (851)
.+|...|++++|+.+|+++++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999999998763
No 233
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.1 Score=57.64 Aligned_cols=170 Identities=9% Similarity=0.068 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhccCC-CCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC--H
Q 038852 358 TFNIMVNECFKHGKFSEAIETFKKAGTHP-KSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREIST----KSLSPD--V 430 (851)
Q Consensus 358 ~~~~L~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~pd--~ 430 (851)
....|+..|...|++.+|.+++..+.... ......--+..|...++.|...+++..|..+++++.. ....++ .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 44667888888888888888888764221 1111111245677778888888899888888887642 212222 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-Cccch----hHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 038852 431 TTFRTLIDAYLKVERIDDALELFNRMVESG-LRVVV----SFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDV 505 (851)
Q Consensus 431 ~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~-~~~~~----~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ 505 (851)
..+...+..+...+++.+|...|.++.+.. ...+. .....++.+..-.+....-..++.+........+...|..
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~ 298 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQES 298 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHH
Confidence 355677777888888888888888776531 00011 1111122222222222222222332222212235567777
Q ss_pred HHHHHHhc--CChHHHHHHHHHHH
Q 038852 506 VVRGLCNE--GLFDMSKDIVDQMM 527 (851)
Q Consensus 506 ll~a~~~~--g~~~~A~~~~~~m~ 527 (851)
++.+|... .+++.+.+.|...+
T Consensus 299 L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 299 LVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHHHCCSSSHHHHHHHTCSST
T ss_pred HHHHHHhchHhhhHHHHHHHHHHh
Confidence 77777653 34566555554433
No 234
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.69 E-value=0.013 Score=49.14 Aligned_cols=66 Identities=15% Similarity=0.125 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 038852 174 NIVSYNNLINTYCDEGK---VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQ 241 (851)
Q Consensus 174 d~~~~~~Li~~~~~~g~---~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g 241 (851)
|...+..++.++...++ .++|..+|+++++.++. +..++..++..+.+.|++++|+++|+++++..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~--~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY--NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 44555555555544433 46666666666666555 55566666666666666666666666666553
No 235
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.66 E-value=0.021 Score=47.92 Aligned_cols=75 Identities=11% Similarity=0.096 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH
Q 038852 136 RPTVFTCNAIIAAMYRAKR---YDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSN 212 (851)
Q Consensus 136 ~~~~~~~~~li~~~~~~g~---~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~ 212 (851)
..|...+..+..+++..++ .++|..+|+++++.+. .++..+..++..+.+.|++++|+..|+++++.++..++..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp--~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~ 80 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP--YNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRV 80 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence 3466777778888765554 6899999999988654 4677888888999999999999999999988776544443
No 236
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.65 E-value=0.28 Score=52.76 Aligned_cols=95 Identities=13% Similarity=0.054 Sum_probs=56.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--C--CCCCCccCH
Q 038852 286 TFMEWWFNQGKDKEAMQSYKSLMERNFRMT-----PATCNTLLEVLLKHEKKEEAQALFEQMLDNH--Q--PPNIQAVNS 356 (851)
Q Consensus 286 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~-----~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~--~--~p~~~~~~~ 356 (851)
.++..|...|++.+|.+++.++.+.--+.| ..++...+..|...+++.++..++..+.... + .|.. ..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i---~a 180 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV---QG 180 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH---HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH---HH
Confidence 566667777777777777766665322111 1345555677778888888888887765421 1 1110 12
Q ss_pred HHHHHHHHHHH-HcCChHHHHHHHHHhc
Q 038852 357 DTFNIMVNECF-KHGKFSEAIETFKKAG 383 (851)
Q Consensus 357 ~~~~~L~~~~~-~~g~~~~A~~~~~~~~ 383 (851)
.....-+.++. ..++|.+|...|-++.
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 22333444556 6788888887776653
No 237
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.58 E-value=0.013 Score=53.83 Aligned_cols=88 Identities=11% Similarity=0.029 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 038852 119 DLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAK---RYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGM 195 (851)
Q Consensus 119 ~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~ 195 (851)
.+..+++.|.+....+. .+..+...+..++++.+ ++++++.+|+++++......+...+..|.-+|.+.|++++|+
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34456666776666553 67778788888888877 777999999998886411013566777888889999999999
Q ss_pred HHHHHHHHhCCC
Q 038852 196 NVFRRIIETAPV 207 (851)
Q Consensus 196 ~l~~~~~~~~~~ 207 (851)
+.++.+++..|.
T Consensus 92 ~y~~~lL~ieP~ 103 (152)
T 1pc2_A 92 KYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHhcCCC
Confidence 999999998765
No 238
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.54 E-value=0.28 Score=52.81 Aligned_cols=177 Identities=14% Similarity=0.045 Sum_probs=99.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccC--HHHH
Q 038852 321 TLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMD--VAGY 398 (851)
Q Consensus 321 ~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d--~~~~ 398 (851)
.|+..|...|++.+|.+++.++.+.-...|....-.+++..-+.+|...+++.++...+.++......-...|. ....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 58899999999999999999998743332221223456777788999999999999999887543211001111 1222
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHH-HHHHcCCccchhHHHH
Q 038852 399 NNIIARYC-ENEMLEEAEKLLREISTKSLSPDV------TTFRTLIDAYLKVERIDDALELFN-RMVESGLRVVVSFGTK 470 (851)
Q Consensus 399 ~~li~~~~-~~g~~~~A~~l~~~m~~~g~~pd~------~~~~~Ll~~~~~~g~~~~A~~~~~-~m~~~~~~~~~~~~~~ 470 (851)
.+-+..+. ..++|.+|...|-+..+.-...+. ..|..|.. .-.++..+...++. +....-..+...++..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~a--Ll~~~r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCK--IMLGQSDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH--HHTTCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH--HHcCCHHHHHHHhccccccccCCccHHHHHH
Confidence 33344566 789999998888776432111121 12322222 22233222222221 2111112445555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCCCHH
Q 038852 471 VFNELITKGKVAECAPILTKMGEKDPKPDFL 501 (851)
Q Consensus 471 L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~ 501 (851)
++.+ ...+++.+...+++..... +..|..
T Consensus 262 L~~a-~~~~dl~~f~~iL~~~~~~-l~~D~~ 290 (394)
T 3txn_A 262 VAEA-SHKRSLADFQAALKEYKKE-LAEDVI 290 (394)
T ss_dssp HHHH-HHTTCHHHHHHHHHHSTTT-TTTSHH
T ss_pred HHHH-HHhCCHHHHHHHHHHHHHH-HhcChH
Confidence 5554 4567887777777765432 344554
No 239
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.53 E-value=0.017 Score=49.56 Aligned_cols=75 Identities=9% Similarity=0.010 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHH
Q 038852 174 NIVSYNNLINTYCDEGKVDEGMNVFRRIIETAP-----VGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLV 248 (851)
Q Consensus 174 d~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~-----~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~ 248 (851)
+...+..|+..+.+.|+++.|+..|+.+++... ......++..|+.+|.+.|++++|+.+++++++..+. +..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~-~~~~ 82 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRA 82 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHH
Confidence 455567788888888888888888888876521 1234567778888888888888888888888776544 4444
Q ss_pred H
Q 038852 249 Y 249 (851)
Q Consensus 249 ~ 249 (851)
.
T Consensus 83 ~ 83 (104)
T 2v5f_A 83 N 83 (104)
T ss_dssp H
T ss_pred H
Confidence 3
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.44 Score=52.60 Aligned_cols=164 Identities=12% Similarity=0.084 Sum_probs=99.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCcc--ch
Q 038852 397 GYNNIIARYCENEMLEEAEKLLREISTK--SLSPD---VTTFRTLIDAYLKVERIDDALELFNRMVE----SGLRV--VV 465 (851)
Q Consensus 397 ~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd---~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~----~~~~~--~~ 465 (851)
....|+..|...|++.+|.+++.++... +.... ...+...+..|...+++.+|..+++++.. ....+ -.
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 3467888999999999999999998642 22211 34677788899999999999999998753 22122 34
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhC-CCCCCHHHHH----HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 038852 466 SFGTKVFNELITKGKVAECAPILTKMGEK-DPKPDFLIYD----VVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDF 540 (851)
Q Consensus 466 ~~~~~L~~~~~~~g~~~~A~~ll~~m~~~-~~~pd~~~~~----~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 540 (851)
.++...+..+...++|.+|...|.++.+. ...-|...+. .++.+..-.+....-..++..........+...+..
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~ 298 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQES 298 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHH
Confidence 56667788888899999999888877542 1111332222 122222222222222233333332222234556666
Q ss_pred HHHHHHhc--CCHHHHHHHHHh
Q 038852 541 VRETFGKA--GRGEEIERVLNA 560 (851)
Q Consensus 541 L~~~~~~~--G~~~eA~~ll~~ 560 (851)
++.+|... .+++.+.+.|+.
T Consensus 299 L~k~f~~~~L~~~~~~~~~~~~ 320 (445)
T 4b4t_P 299 LVKLFTTNELMRWPIVQKTYEP 320 (445)
T ss_dssp HHHHHHHCCSSSHHHHHHHTCS
T ss_pred HHHHHHhchHhhhHHHHHHHHH
Confidence 77777653 356666555554
No 241
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=96.23 E-value=1.4 Score=45.81 Aligned_cols=25 Identities=32% Similarity=0.251 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 038852 394 DVAGYNNIIARYCENEMLEEAEKLL 418 (851)
Q Consensus 394 d~~~~~~li~~~~~~g~~~~A~~l~ 418 (851)
|......++..|.+.+++.+|+..|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 5566666777777777777776665
No 242
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.22 E-value=0.029 Score=51.46 Aligned_cols=83 Identities=19% Similarity=0.114 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 038852 191 VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAG---RIGEAVDLLRDMLSRQ-LGADSLVYNNLISGFLNLGNLEKAN 266 (851)
Q Consensus 191 ~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g---~~~~A~~l~~~m~~~g-~~pd~~~~~~Li~~~~~~g~~~~A~ 266 (851)
+..+.+.|.+....++ ++..+...++.++++.+ ++++++.+|+++++.+ ..-+...+..|..+|.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~~--~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS--VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 3344444444444332 24555555555555554 4445555555555543 1012334444555555555555555
Q ss_pred HHHHHHHhc
Q 038852 267 ELFDELKQR 275 (851)
Q Consensus 267 ~~~~~~~~~ 275 (851)
++++.+++.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 555555544
No 243
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=96.13 E-value=1.5 Score=45.27 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038852 394 DVAGYNNIIARYCENEMLEEAEKLLR 419 (851)
Q Consensus 394 d~~~~~~li~~~~~~g~~~~A~~l~~ 419 (851)
|......++..|.+.|++.+|+..|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 56666667777777777777666553
No 244
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.94 E-value=0.057 Score=48.73 Aligned_cols=111 Identities=9% Similarity=0.043 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHHcCCh------HHHHHHHHHhccCCCCCCC---ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038852 355 NSDTFNIMVNECFKHGKF------SEAIETFKKAGTHPKSKPF---AMDVAGYNNIIARYCENEMLEEAEKLLREISTKS 425 (851)
Q Consensus 355 ~~~~~~~L~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 425 (851)
|.++|...+....+.|+. ++.+++|+++....+.... ..-+..|...+. +...+|.++|.++|+.+++.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~-~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAE-LKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHH-HHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHh
Confidence 566666666666666666 6666666665432211100 001111211111 233467777777777776542
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchhH
Q 038852 426 LSPDVTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVSF 467 (851)
Q Consensus 426 ~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 467 (851)
-.- ..+|......-.+.|++++|.+++.+++..+.++...+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 222 66777777777777888888888888777776654443
No 245
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.86 E-value=0.041 Score=48.51 Aligned_cols=97 Identities=12% Similarity=0.071 Sum_probs=65.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH---HHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 038852 110 RVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDD---AVALFKYFFDQADIVPNIVSYNNLINTYC 186 (851)
Q Consensus 110 ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~l~~~~~~~~~~~pd~~~~~~Li~~~~ 186 (851)
++...+....+..+.+.+.+....+. ++..+-..+..++++.++..+ ++.+++.+++.............|+-++.
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y 85 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 34444455556666666776665553 566666667777777766555 88888888664211113445667777888
Q ss_pred HcCChHHHHHHHHHHHHhCCC
Q 038852 187 DEGKVDEGMNVFRRIIETAPV 207 (851)
Q Consensus 187 ~~g~~~~A~~l~~~~~~~~~~ 207 (851)
+.|+|++|++.++.+++..|.
T Consensus 86 klg~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 86 RLKEYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT
T ss_pred HhhhHHHHHHHHHHHHHhCCC
Confidence 899999999999998888766
No 246
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.79 E-value=0.065 Score=48.37 Aligned_cols=53 Identities=19% Similarity=0.150 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc
Q 038852 225 GRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLV 278 (851)
Q Consensus 225 g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~ 278 (851)
+|.++|.++|+.+++.+-+ -..+|...+..-.+.|++++|++++.+.+..+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 4555555555555443222 2444544445555555555555555555554444
No 247
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.64 E-value=0.037 Score=51.10 Aligned_cols=138 Identities=13% Similarity=0.140 Sum_probs=81.8
Q ss_pred CCccHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC-------HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCC
Q 038852 103 PRLNLHNRVQSLIRAGDLDAASYLARQAVFSR-IRPT-------VFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPN 174 (851)
Q Consensus 103 ~~~~l~~ll~~l~~~g~~~~A~~l~~~~~~~~-~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd 174 (851)
....+.+-++.++..+.++.|+.+.+.++... ..++ ..++..++++++..|+|..|...|+.++.....-+.
T Consensus 19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence 34688999999999999999998888755432 2233 236677889999999999999999998653222111
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038852 175 -IVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLI 253 (851)
Q Consensus 175 -~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 253 (851)
..++..+. ....... ......+.+.-..+..||.+.+++++|+.+++.+-.+.- +..+-..|+
T Consensus 99 ~~s~~~~~~----~~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R--t~kvnm~La 162 (167)
T 3ffl_A 99 TSKVRPSTG----NSASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQR--TPKINMLLA 162 (167)
T ss_dssp --------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC--CHHHHHHHH
T ss_pred CCCcccccc----ccCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc--CHHHHHHHH
Confidence 11111110 0000000 000122445555678888888888888888887644321 444444455
Q ss_pred HHH
Q 038852 254 SGF 256 (851)
Q Consensus 254 ~~~ 256 (851)
+.|
T Consensus 163 kLy 165 (167)
T 3ffl_A 163 NLY 165 (167)
T ss_dssp HHC
T ss_pred HHh
Confidence 443
No 248
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=95.21 E-value=3.4 Score=42.69 Aligned_cols=170 Identities=12% Similarity=0.098 Sum_probs=89.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHH----HHHHHHhcCCCCHHHHHHHH
Q 038852 248 VYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQS----YKSLMERNFRMTPATCNTLL 323 (851)
Q Consensus 248 ~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l----~~~~~~~~~~~~~~~~~~Li 323 (851)
.|.++..-|.+.+++++|++++..-... +.+.|.+..|.++ ++...+.+.+.+......|+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~---------------ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGALS---------------FLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH---------------HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3444555566666666666665433221 3344444443333 23333445566666666666
Q ss_pred HHHHhCCCHH-HHHHHHHHHHH----cCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHH
Q 038852 324 EVLLKHEKKE-EAQALFEQMLD----NHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGY 398 (851)
Q Consensus 324 ~~~~~~g~~~-~A~~l~~~m~~----~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~ 398 (851)
..+......+ .-.++++++++ .+..+ ..+......++..|.+.|++.+|...|-.... + |...+
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~---~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~---~-----s~~~~ 168 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYK---FGDPYLHNTIGSKLLEGDFVYEAERYFMLGTH---D-----SMIKY 168 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCT---TCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCH---H-----HHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCC---CCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCC---c-----cHHHH
Confidence 6654432111 12333333332 22211 12788999999999999999999998863210 0 34445
Q ss_pred HHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 399 NNIIARYCEN---EMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVE 458 (851)
Q Consensus 399 ~~li~~~~~~---g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~ 458 (851)
..++.-+... |...++- ...-. .+-.|...+++..|..+|+...+
T Consensus 169 a~~l~~w~~~~~~~~~~e~d--------------lf~~R-aVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 169 VDLLWDWLCQVDDIEDSTVA--------------EFFSR-LVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHHHTTCCCHHHHH--------------HHHHH-HHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcchHH--------------HHHHH-HHHHHHHhcCHHHHHHHHHHHHH
Confidence 5444443333 4333321 11112 22245567888888888887653
No 249
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=95.20 E-value=3.5 Score=42.83 Aligned_cols=169 Identities=14% Similarity=0.183 Sum_probs=87.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHH----HHHHHhcCCCCHHHHHHHHH
Q 038852 249 YNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSY----KSLMERNFRMTPATCNTLLE 324 (851)
Q Consensus 249 ~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~----~~~~~~~~~~~~~~~~~Li~ 324 (851)
|.++..-|.+.+++++|++++..-... +.+.|....|.++. +...+.++++|......|+.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA~~---------------ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVSQT---------------LLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHH---------------HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344555566667777776665432211 33334443333332 33334455566666666666
Q ss_pred HHHhCCCHH-HHHHHHHHHHH----cCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHH
Q 038852 325 VLLKHEKKE-EAQALFEQMLD----NHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYN 399 (851)
Q Consensus 325 ~~~~~g~~~-~A~~l~~~m~~----~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~ 399 (851)
.+......+ .=.++++++++ .|..+ ..+......++..|.+.+++.+|...|-. . .+ + ....|.
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~---~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il--g--~~-~---s~~~~a 171 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYP---AGDPELHHVVGTLYVEEGEFEAAEKHLVL--G--TK-E---SPEVLA 171 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCT---TCCHHHHHHHHHHHHHTTCHHHHHHHHTT--S--CT-T---HHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCC---CCCHHHHHHHHHHHHccCCHHHHHHHHHh--c--CC-c---hHHHHH
Confidence 655444311 11223333332 22111 12788999999999999999999998832 1 11 0 234554
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 400 NIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVE 458 (851)
Q Consensus 400 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~ 458 (851)
.++.-+...+... +.|.++-. .+-.|...+++..|..+|+...+
T Consensus 172 ~mL~ew~~~~~~~--------------e~dlfiaR-aVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 172 RMEYEWYKQDESH--------------TAPLYCAR-AVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHHTSCGG--------------GHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCc--------------cHHHHHHH-HHHHHHHhCCHHHHHHHHHHHHH
Confidence 4443333333211 11222223 33345667889888887776654
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.13 E-value=0.26 Score=61.52 Aligned_cols=106 Identities=10% Similarity=0.030 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCcc------------------CHHHHHHHHHHHHhcCCHHHHHH
Q 038852 355 NSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAM------------------DVAGYNNIIARYCENEMLEEAEK 416 (851)
Q Consensus 355 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------d~~~~~~li~~~~~~g~~~~A~~ 416 (851)
+......++.+|...|++++|.++|.++........... ...-|..++..+.+.+.++.+.+
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~ 920 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE 920 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 444556677778888888888888877632211111000 11234556666666666666666
Q ss_pred HHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 038852 417 LLREISTKSLSPDV----TTFRTLIDAYLKVERIDDALELFNRMVESG 460 (851)
Q Consensus 417 l~~~m~~~g~~pd~----~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~ 460 (851)
+-..+++....-+. ..|..+..++...|++++|...+-.+.+..
T Consensus 921 fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 921 FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 66555543211121 245666666777777777766666655443
No 251
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.11 E-value=0.66 Score=42.43 Aligned_cols=87 Identities=14% Similarity=0.076 Sum_probs=54.5
Q ss_pred HHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----------------
Q 038852 364 NECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLS---------------- 427 (851)
Q Consensus 364 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---------------- 427 (851)
.++.-.|.+.+++-++.... ...+..--..+|.+.+++..|...++.+++..+.
T Consensus 41 I~LyyngEY~R~Lf~L~~lN----------T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~ 110 (242)
T 3kae_A 41 IVLYLNGEYTRALFHLHKLN----------TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDP 110 (242)
T ss_dssp HHHHHTTCHHHHHHHHHTCC----------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCT
T ss_pred hhhhhcchHhHHHHHHHhcc----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeecc
Confidence 34456677777776665541 1111112223556677777777777777643332
Q ss_pred CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 038852 428 PD-VTTFRTLIDAYLKVERIDDALELFNRMVESG 460 (851)
Q Consensus 428 pd-~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~ 460 (851)
-| ...++.++..|...|+.++|+..|.......
T Consensus 111 ~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~ 144 (242)
T 3kae_A 111 GDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKS 144 (242)
T ss_dssp TCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCc
Confidence 12 3456778888888999999999988877654
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.80 E-value=0.15 Score=47.06 Aligned_cols=136 Identities=10% Similarity=0.085 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH-H
Q 038852 141 TCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNI-------VSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSS-N 212 (851)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~-------~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~-~ 212 (851)
.+..-+..+...|.|+.|+-+.+.++...+..+++ .++..+++++...|+|.+|...|++++.....-+.. .
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34445667788999999999988876544333442 356778899999999999999999987643221111 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHH
Q 038852 213 TYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWW 291 (851)
Q Consensus 213 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~ 291 (851)
++..+. ....... ......+...-..+..+|.+.+++++|+.+++.+-.+.. +..+...|++.|
T Consensus 102 ~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R--t~kvnm~LakLy 165 (167)
T 3ffl_A 102 VRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQR--TPKINMLLANLY 165 (167)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC--CHHHHHHHHHHC
T ss_pred cccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc--CHHHHHHHHHHh
Confidence 111110 0000000 011223556666799999999999999999988654432 334444444443
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.77 E-value=0.55 Score=58.59 Aligned_cols=192 Identities=14% Similarity=0.159 Sum_probs=99.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------------------
Q 038852 145 IIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIET-------------------- 204 (851)
Q Consensus 145 li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~-------------------- 204 (851)
++..+.+.+.++.|.++.... . .+...-..++.+|..+|++++|.++|.++...
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-N-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-C-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-c-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 444555566666555544332 1 23333345556666666666666666553110
Q ss_pred CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcc
Q 038852 205 AP-VGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADS----LVYNNLISGFLNLGNLEKANELFDELKQRCLVY 279 (851)
Q Consensus 205 ~~-~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~ 279 (851)
.. ...-..-|..++..+.+.+.++.++++-..+++....-+. ..|..+.+.+...|++++|...+..+......
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r- 970 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK- 970 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC-
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH-
Confidence 00 0011234666777777777777777777766654322222 25666777777777777777777665544332
Q ss_pred chhhHHHHHHHHHHc------------CCHHHHHHHHHHHHH-h-cCCCCHHHHHHHHHHHHhCCCHHHH-HHHHHHHHH
Q 038852 280 DGVVNATFMEWWFNQ------------GKDKEAMQSYKSLME-R-NFRMTPATCNTLLEVLLKHEKKEEA-QALFEQMLD 344 (851)
Q Consensus 280 d~~~~~~li~~~~~~------------g~~~~A~~l~~~~~~-~-~~~~~~~~~~~Li~~~~~~g~~~~A-~~l~~~m~~ 344 (851)
......|+..+|.. |..++..+++....+ . .+...+..|..|-..+...|++.+| .-+|+.+.+
T Consensus 971 -~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 971 -KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp -HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 23344444444433 445555555543322 1 1222223455455555666666654 445555544
No 254
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=94.70 E-value=1.6 Score=50.12 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=23.4
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038852 105 LNLHNRVQSLIRAGDLDAASYLARQAV 131 (851)
Q Consensus 105 ~~l~~ll~~l~~~g~~~~A~~l~~~~~ 131 (851)
..+..+|--++|+|++++|.++.++..
T Consensus 153 ~p~Wa~IyY~LR~G~~~~A~e~~~~~~ 179 (661)
T 2qx5_A 153 VPIWALIFYLLRAGLIKEALQVLVENK 179 (661)
T ss_dssp EEHHHHHHHHHTTTCHHHHHHHHHHTG
T ss_pred cccHHHHHHHHhcCCHHHHHHHHHHhh
Confidence 358899999999999999999987754
No 255
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.62 E-value=0.14 Score=45.04 Aligned_cols=85 Identities=18% Similarity=0.067 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 038852 191 VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGE---AVDLLRDMLSRQ-LGADSLVYNNLISGFLNLGNLEKAN 266 (851)
Q Consensus 191 ~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~---A~~l~~~m~~~g-~~pd~~~~~~Li~~~~~~g~~~~A~ 266 (851)
+..+.+.|.+....+. ++..+-..++.++++..+..+ ++.+++++.+.+ ..-.......|+-++.+.|++++|+
T Consensus 17 l~~~~~~y~~e~~~~~--~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS--VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSC--CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3445555555555443 355666666666666665444 666676666653 1112344445666666777777777
Q ss_pred HHHHHHHhcCC
Q 038852 267 ELFDELKQRCL 277 (851)
Q Consensus 267 ~~~~~~~~~~~ 277 (851)
++++.+++..+
T Consensus 95 ~~~~~lL~~eP 105 (126)
T 1nzn_A 95 KYVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHHhCC
Confidence 77766666543
No 256
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.53 E-value=0.64 Score=50.26 Aligned_cols=69 Identities=9% Similarity=0.126 Sum_probs=48.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCCHHH
Q 038852 178 YNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLS-----RQLGADSLV 248 (851)
Q Consensus 178 ~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~~ 248 (851)
...++..+...|++++|+..++.++..+|. +...|..|+.+|.+.|+..+|++.|+++.+ .|+.|...+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~--~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPY--REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 445566667777777777777777777666 777777777777777777777777776543 466666544
No 257
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=94.52 E-value=2.2 Score=48.97 Aligned_cols=82 Identities=10% Similarity=-0.052 Sum_probs=40.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHH
Q 038852 286 TFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNE 365 (851)
Q Consensus 286 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~ 365 (851)
.+..++.-.|.+|.|++++-+. ...+.+ .++-++...|-+.. -+.++... ++. ...-+..|+..
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~----~~vdAV---H~AIaL~~~gLL~~----~~~lls~~--~~~---~~lN~arLI~~ 362 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF----SEMDAV---HLAIGLASLKLFKI----DSSTRLTK--KPK---RDIRFANILAN 362 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT----CHHHHH---HHHHHHHHTTC--------------------------CHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHhc----CchhHH---HHHHHHHHcCCccC----CCcccccC--CCc---ccccHHHHHHH
Confidence 4556677789999998877654 111222 23334444454443 11111110 000 12235666666
Q ss_pred HH---HcCChHHHHHHHHHhc
Q 038852 366 CF---KHGKFSEAIETFKKAG 383 (851)
Q Consensus 366 ~~---~~g~~~~A~~~~~~~~ 383 (851)
|. +..+..+|+++|--+.
T Consensus 363 Yt~~F~~td~~~Al~Y~~li~ 383 (661)
T 2qx5_A 363 YTKSFRYSDPRVAVEYLVLIT 383 (661)
T ss_dssp HHTTTTTTCHHHHHHHHHGGG
T ss_pred HHHHhhcCCHHHHHHHHHHHh
Confidence 65 4677888888887763
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.97 E-value=2.7 Score=45.25 Aligned_cols=138 Identities=9% Similarity=0.050 Sum_probs=92.1
Q ss_pred ccCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhC--CC-CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCccc
Q 038852 392 AMDVAGYNNIIARYC---ENEMLEEAEKLLREISTK--SL-SPDVTTFRTLIDAYLKVERI-DDALELFNRMVESGLRVV 464 (851)
Q Consensus 392 ~~d~~~~~~li~~~~---~~g~~~~A~~l~~~m~~~--g~-~pd~~~~~~Ll~~~~~~g~~-~~A~~~~~~m~~~~~~~~ 464 (851)
..|...|..++.... ..|+.++|.+.+++++.. |. -++.. ...+ +.....+++...
T Consensus 109 ~~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~-----------~~~w~~~~r~~l~~~~~------ 171 (388)
T 2ff4_A 109 TCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-----------DFQFVEPFATALVEDKV------ 171 (388)
T ss_dssp GBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-----------TSTTHHHHHHHHHHHHH------
T ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC-----------chhHHHHHHHHHHHHHH------
Confidence 346666766665433 357888999999888764 21 11110 0111 111122222211
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----HcCCCCCHHHHH
Q 038852 465 VSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMM-----KYGVGITPALQD 539 (851)
Q Consensus 465 ~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~-----~~g~~~~~~~~~ 539 (851)
.....++..+...|++++|+..++.+.....- +...|..++.+|.+.|+..+|++.|+++. +.|+.|.+.+..
T Consensus 172 -~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 172 -LAHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 11223667788899999999999998876443 78899999999999999999999999876 369999999888
Q ss_pred HHHHHHHhc
Q 038852 540 FVRETFGKA 548 (851)
Q Consensus 540 ~L~~~~~~~ 548 (851)
..-.++...
T Consensus 250 l~~~il~~~ 258 (388)
T 2ff4_A 250 LNERILRQQ 258 (388)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHcCC
Confidence 776666543
No 259
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=92.09 E-value=0.011 Score=65.77 Aligned_cols=11 Identities=27% Similarity=0.220 Sum_probs=5.5
Q ss_pred CCHHHHHHHHH
Q 038852 409 EMLEEAEKLLR 419 (851)
Q Consensus 409 g~~~~A~~l~~ 419 (851)
.+.+.|.++++
T Consensus 271 ~~~e~A~~fl~ 281 (449)
T 3iot_A 271 PNKELAKEFLE 281 (449)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 34555555553
No 260
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.85 E-value=1.5 Score=39.22 Aligned_cols=69 Identities=16% Similarity=0.171 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038852 209 PSSNTYRHLTKGFVDAGR---IGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCL 277 (851)
Q Consensus 209 p~~~~~~~Li~~~~~~g~---~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~ 277 (851)
++..+-..++.++++..+ ..+++.+++++.+.+..-.......|+-++.+.|++++|+++.+.+++..+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 455555555555555443 334555666555544332334444555566666666666666666655433
No 261
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=91.29 E-value=0.035 Score=61.72 Aligned_cols=12 Identities=8% Similarity=0.346 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHc
Q 038852 334 EAQALFEQMLDN 345 (851)
Q Consensus 334 ~A~~l~~~m~~~ 345 (851)
++++.+.++.+.
T Consensus 190 ~al~~~~~l~~~ 201 (449)
T 3iot_A 190 AGLTFLVDLIKN 201 (449)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 333444444333
No 262
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.25 E-value=0.92 Score=40.08 Aligned_cols=68 Identities=16% Similarity=0.184 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038852 209 PSSNTYRHLTKGFVDAGR---IGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRC 276 (851)
Q Consensus 209 p~~~~~~~Li~~~~~~g~---~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~ 276 (851)
++..+-..++.++++..+ ..+++.+++++.+.+..-....+..|+-++.+.|++++|+++.+.+++..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 344555555555555443 33455666665554432233445555666666666666666666665543
No 263
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.80 E-value=1.8 Score=38.16 Aligned_cols=59 Identities=20% Similarity=0.153 Sum_probs=31.6
Q ss_pred HHHHHHHcCCH---HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038852 471 VFNELITKGKV---AECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKY 529 (851)
Q Consensus 471 L~~~~~~~g~~---~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~ 529 (851)
++.++++..+. .+++.+++++.+.+..-....+-.|..++.+.|++++|+++.+.+++.
T Consensus 46 yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 46 YAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 44555555433 345666666655432212334444555666666666666666666653
No 264
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.50 E-value=3.1 Score=45.88 Aligned_cols=65 Identities=12% Similarity=0.078 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 038852 395 VAGYNNIIARYCENEMLEEAEKLLREISTKSL-SPD---VTTFRTLIDAYLKVERIDDALELFNRMVES 459 (851)
Q Consensus 395 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd---~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~ 459 (851)
...+|.+++.|...+.++.|.+++.+..--.. ..| ..-+..++..+.-.+++.+|.+.|..+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45677777777777777777777776641100 011 112234566666677777777777777654
No 265
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=90.47 E-value=28 Score=39.68 Aligned_cols=49 Identities=6% Similarity=-0.062 Sum_probs=25.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHH
Q 038852 437 IDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPIL 488 (851)
Q Consensus 437 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll 488 (851)
+..+...|....|...+..+.+.. .+ .-...+.......|.++.++...
T Consensus 388 ~~~L~~~g~~~~a~~ew~~~~~~~-~~--~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 388 VRELMYWNLDNTARSEWANLVKSK-SK--TEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-CH--HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHCCChhhHHHHHHHHHhcC-CH--HHHHHHHHHHHHCCChHHHHHHH
Confidence 344566777777777776666532 11 11122334444556555555433
No 266
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=90.25 E-value=11 Score=34.59 Aligned_cols=114 Identities=12% Similarity=0.107 Sum_probs=59.7
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 038852 148 AMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLIN-TYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGR 226 (851)
Q Consensus 148 ~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~-~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~ 226 (851)
-+.+-.+++.++-+-.-+.. +..-|..|+. .+.-.|.+.+++-++... + +..+...-.-||.+..+
T Consensus 11 Ks~kY~dYdt~~fLsa~L~~------~~~eY~lL~~I~LyyngEY~R~Lf~L~~l---N----T~Ts~YYk~LCy~klKd 77 (242)
T 3kae_A 11 KSIRYRDYETAIFLAACLLP------CKPEYRMLMSIVLYLNGEYTRALFHLHKL---N----TCTSKYYESLCYKKKKD 77 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHC----------CTHHHHHHHHHHTTCHHHHHHHHHTC---C----BHHHHHHHHHHHHHTTC
T ss_pred HHhhcccccHHHHHHHHHcc------CChHHHhhhhhhhhhcchHhHHHHHHHhc---c----hHHHHHHHHHHHHHHHH
Confidence 34567788877654443321 1112333332 345678888877665432 1 22222222346777888
Q ss_pred HHHHHHHHHHHHhcCCCCC--H---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038852 227 IGEAVDLLRDMLSRQLGAD--S---------------LVYNNLISGFLNLGNLEKANELFDELKQ 274 (851)
Q Consensus 227 ~~~A~~l~~~m~~~g~~pd--~---------------~~~~~Li~~~~~~g~~~~A~~~~~~~~~ 274 (851)
+..|+..++.+++..+.-| + ..|+.++..|...|+.++|+..|..--.
T Consensus 78 YkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 78 YKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 8888888888885443321 1 2344444455555555555555544333
No 267
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.18 E-value=3.7 Score=36.74 Aligned_cols=61 Identities=18% Similarity=0.120 Sum_probs=42.0
Q ss_pred HHHHHHHHcCC---HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038852 470 KVFNELITKGK---VAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYG 530 (851)
Q Consensus 470 ~L~~~~~~~g~---~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g 530 (851)
.+..++++..+ ..+++.+++.+.+.+..-....+-.|.-++.+.|++++|+++.+.+++..
T Consensus 44 ~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 44 NYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 36677777665 44677888887775433234444556677888888888888888888754
No 268
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=89.60 E-value=20 Score=39.87 Aligned_cols=75 Identities=12% Similarity=0.073 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038852 479 GKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIE 555 (851)
Q Consensus 479 g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~ 555 (851)
.+.......+++++.+-.--+..-...++..|.+.|..+.|.++++.+-.+-+. +...+ ..+..|.|+|+++...
T Consensus 495 ~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~Vk 569 (570)
T 3f3f_C 495 GTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELVK 569 (570)
T ss_dssp SCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC---------------------------
T ss_pred cchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhcc
Confidence 344445555666655533335556667788888888888888888887654322 22233 4556778888877653
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.98 E-value=4.9 Score=40.16 Aligned_cols=120 Identities=15% Similarity=0.143 Sum_probs=64.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHhCCCH
Q 038852 255 GFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTP--ATCNTLLEVLLKHEKK 332 (851)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~--~~~~~Li~~~~~~g~~ 332 (851)
...+.|++++|++.+..-++..+. |......|+..+|-.|++++|.+-++.+.+.+..... .+|..+|.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~-------- 76 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK-------- 76 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH--------
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH--------
Confidence 344556666666666666666555 6666666666666677777776666666665542211 12222222
Q ss_pred HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHH--HHcCChHHHHHHHHHhccC
Q 038852 333 EEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNEC--FKHGKFSEAIETFKKAGTH 385 (851)
Q Consensus 333 ~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~--~~~g~~~~A~~~~~~~~~~ 385 (851)
|+..=.++...+..|.+......-...|+.+. ...|+.++|.++-..+.+.
T Consensus 77 --aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 77 --AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp --HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22222334444445544433344444444443 3458888887777666443
No 270
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=88.97 E-value=6.4 Score=40.38 Aligned_cols=51 Identities=12% Similarity=-0.115 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhcCCccc--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 038852 262 LEKANELFDELKQRCLVYD--GVVNATFMEWWFNQGKDKEAMQSYKSLMERNF 312 (851)
Q Consensus 262 ~~~A~~~~~~~~~~~~~~d--~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~ 312 (851)
..+..++-..+...++.+. ..+....|....|.+++..|..+.+++++.+.
T Consensus 186 ~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p 238 (325)
T 3mv2_A 186 TVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIIS 238 (325)
T ss_dssp HHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 3444444444444443332 23445556677788888888888888877765
No 271
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.82 E-value=4.7 Score=44.03 Aligned_cols=63 Identities=6% Similarity=-0.160 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038852 141 TCNAIIAAMYRAKRYDDAVALFKYFFDQA-DIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIE 203 (851)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~-~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~ 203 (851)
++..++..|.+.|++++|.++|.++.... +..--...+..+++.+...+++..+...++++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44556666666777777777776665431 1112244555666666666666666666666543
No 272
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.73 E-value=5.9 Score=43.75 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHH
Q 038852 317 ATCNTLLEVLLKHEKKEEAQALFEQM 342 (851)
Q Consensus 317 ~~~~~Li~~~~~~g~~~~A~~l~~~m 342 (851)
.++|.+++.|...+.++.|.++..+.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcC
Confidence 34555555555555555555555544
No 273
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.24 E-value=4.6 Score=44.08 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038852 213 TYRHLTKGFVDAGRIGEAVDLLRDMLSRQL--GADSLVYNNLISGFLNLGNLEKANELFDELKQ 274 (851)
Q Consensus 213 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~--~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~ 274 (851)
++..++..|.+.|++++|.++|.++..... .--...+..+++.+...+|+..+...++++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 556677777777777777777777766422 22235666677777777777777777776653
No 274
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.06 E-value=5 Score=33.40 Aligned_cols=63 Identities=16% Similarity=0.138 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038852 480 KVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRE 543 (851)
Q Consensus 480 ~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~ 543 (851)
|.-++.+-++.+...++.|+..+..+.+++|.+.+++..|+++|+-++.+- .....+|.+++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 566777788888888999999999999999999999999999999887532 233455666553
No 275
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.90 E-value=15 Score=32.35 Aligned_cols=64 Identities=16% Similarity=0.135 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038852 480 KVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRET 544 (851)
Q Consensus 480 ~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~ 544 (851)
|.-+..+-++.+...++.|+..+....+++|.+.+++..|+++|+-++.+- .....+|.+++.-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHH
Confidence 455666777888888999999999999999999999999999999887542 2345566665543
No 276
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=82.92 E-value=10 Score=31.59 Aligned_cols=62 Identities=8% Similarity=0.120 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHH
Q 038852 226 RIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFM 288 (851)
Q Consensus 226 ~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li 288 (851)
+.-+..+-++.+...++.|+..+..+.+++|.+.+|+..|.++|+-++.+.-. ...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~-~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP-HKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-chhhHHHHH
Confidence 44466667777777778888888888888888888888888888877765433 233444433
No 277
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=81.79 E-value=7 Score=41.15 Aligned_cols=64 Identities=19% Similarity=0.238 Sum_probs=38.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCC
Q 038852 359 FNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEM--LEEAEKLLREISTKSLS 427 (851)
Q Consensus 359 ~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~ 427 (851)
...++.-|...|+.++|..+++++..- .+. ...+...+..++-+.++ .+...+++..+.+.|+-
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p----~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVP----HFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCT----TCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCC----cch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 456677788888888888888888421 111 23334444445444332 34566677767666544
No 278
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=79.68 E-value=29 Score=34.66 Aligned_cols=53 Identities=13% Similarity=0.242 Sum_probs=27.7
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSR 240 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 240 (851)
.+.|++++|++.+..-++.+|. |...-..|+..+|-.|++++|.+-++.+.+.
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~--da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPK--DASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3445555555555555555444 4444455555555555555555555555444
No 279
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.54 E-value=14 Score=32.44 Aligned_cols=61 Identities=8% Similarity=0.124 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHH
Q 038852 227 IGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFM 288 (851)
Q Consensus 227 ~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li 288 (851)
.-+..+-++.+...++.|+..+....+++|.+.+|+..|.++|+-++.+.-. ...+|..++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~-~~~iY~y~l 129 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP-HKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC-chhhHHHHH
Confidence 3345666777777788888888888888888888888888888887765433 233444443
No 280
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=78.18 E-value=90 Score=34.68 Aligned_cols=75 Identities=9% Similarity=0.017 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 038852 444 ERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSK 520 (851)
Q Consensus 444 g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~ 520 (851)
.+.+..+...++++.+-.-.+..-...++..|.+.|-.+.|.++++.+-.+-+. +...| ..+..|.++|+++..+
T Consensus 495 ~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~Vk 569 (570)
T 3f3f_C 495 GTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELVK 569 (570)
T ss_dssp SCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC---------------------------
T ss_pred cchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhcc
Confidence 344555666666665433333333344677788888888888888877665443 33444 4556677777776643
No 281
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=76.62 E-value=51 Score=31.06 Aligned_cols=169 Identities=12% Similarity=-0.047 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 038852 355 NSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFR 434 (851)
Q Consensus 355 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~ 434 (851)
+..+-...+..+.+.++. +++..+.++.... |...-...+.++.+.++. ++...+.+++.. +|..+-.
T Consensus 32 ~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~~~-------~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~~---~~~~vr~ 99 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDE-RAVEPLIKALKDE-------DAWVRRAAADALGQIGDE-RAVEPLIKALKD---EDGWVRQ 99 (211)
T ss_dssp SHHHHHHHHHHHHHHCCG-GGHHHHHHHTTCS-------CHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SSHHHHH
T ss_pred CHHHHHHHHHHHHHhCCc-cHHHHHHHHHcCC-------CHHHHHHHHHHHHhhCCH-HHHHHHHHHHcC---CCHHHHH
Confidence 444555555555565553 3333333333211 444455555566666553 344444444432 4555555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 038852 435 TLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEG 514 (851)
Q Consensus 435 ~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g 514 (851)
..+.++.+.++. +++..+.++++. ++...-...+.++...|+. +++..+.++.+ .+|..+-...+.++.+.+
T Consensus 100 ~a~~aL~~~~~~-~~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 100 SAAVALGQIGDE-RAVEPLIKALKD---EDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIG 171 (211)
T ss_dssp HHHHHHHHHCCG-GGHHHHHHHTTC---SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcH-HHHHHHHHHHhC---CCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhC
Confidence 566666666653 234444444432 2333333455556665553 34455555543 235566666677777766
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 038852 515 LFDMSKDIVDQMMKYGVGITPALQDFVRETFGK 547 (851)
Q Consensus 515 ~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~ 547 (851)
. .++...+..+++. .+..+....+.++.+
T Consensus 172 ~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 172 G-ERVRAAMEKLAET---GTGFARKVAVNYLET 200 (211)
T ss_dssp S-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC
T ss_pred c-hhHHHHHHHHHhC---CCHHHHHHHHHHHHh
Confidence 5 4566666666553 344444444444443
No 282
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=75.11 E-value=27 Score=35.79 Aligned_cols=53 Identities=11% Similarity=0.022 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc
Q 038852 226 RIGEAVDLLRDMLSRQLGADS--LVYNNLISGFLNLGNLEKANELFDELKQRCLV 278 (851)
Q Consensus 226 ~~~~A~~l~~~m~~~g~~pd~--~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~ 278 (851)
+..+.+++-.-+-.-.+.|.. -++...+..+.|.+++..|..+.+++++.+..
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 344445544444444343222 34556677778888888888888888877654
No 283
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=75.02 E-value=53 Score=31.16 Aligned_cols=59 Identities=12% Similarity=0.107 Sum_probs=45.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchh
Q 038852 408 NEMLEEAEKLLREISTKSLSPD-VTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVS 466 (851)
Q Consensus 408 ~g~~~~A~~l~~~m~~~g~~pd-~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 466 (851)
.+...++.++|..|...|+-.. +..|...+..+...|++.+|.++|+..++.+-.|...
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~r 151 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNR 151 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 3447788889988888776544 5677788888888899999999999988887777544
No 284
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=74.87 E-value=59 Score=30.87 Aligned_cols=54 Identities=20% Similarity=0.092 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 038852 191 VDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGA 244 (851)
Q Consensus 191 ~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p 244 (851)
..++.++|..|...+-..--...|...+..+...|++.+|.++|+..++.+..|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445555555554443222223344444445555555555555555555544443
No 285
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=73.51 E-value=80 Score=33.03 Aligned_cols=26 Identities=23% Similarity=0.511 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038852 213 TYRHLTKGFVDAGRIGEAVDLLRDML 238 (851)
Q Consensus 213 ~~~~Li~~~~~~g~~~~A~~l~~~m~ 238 (851)
....++.-|...++.++|...++++.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 34566777777888888888877754
No 286
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=72.67 E-value=47 Score=35.43 Aligned_cols=19 Identities=11% Similarity=0.254 Sum_probs=11.5
Q ss_pred HHHHHhCCCHHHHHHHHHH
Q 038852 323 LEVLLKHEKKEEAQALFEQ 341 (851)
Q Consensus 323 i~~~~~~g~~~~A~~l~~~ 341 (851)
.-+|.-.|++++...++..
T Consensus 268 ~lCYi~Ag~~dk~v~iW~~ 286 (399)
T 2pm7_A 268 LTLYLAAGSLDKVASIWLS 286 (399)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHhhCCHHHHHHHHHH
Confidence 3445555777777776654
No 287
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=71.82 E-value=16 Score=37.59 Aligned_cols=63 Identities=21% Similarity=0.256 Sum_probs=33.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCC
Q 038852 359 FNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEM--LEEAEKLLREISTKSL 426 (851)
Q Consensus 359 ~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~ 426 (851)
...++.-|...|+.++|..+++++..- .+. ...++..+..++-+.++ .+...+++..+.+.|+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p----~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ 233 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVP----HFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSST 233 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCG----GGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCC----cch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCC
Confidence 356677777888888888888887321 110 22333334444433322 3445556666555443
No 288
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=70.80 E-value=40 Score=27.96 Aligned_cols=47 Identities=11% Similarity=0.093 Sum_probs=19.4
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 038852 186 CDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLS 239 (851)
Q Consensus 186 ~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~ 239 (851)
...|+|++|..+.+.. ..||...|..|. -.+.|-.+++...+.++..
T Consensus 51 mNrG~Yq~Al~l~~~~-----c~pdlepw~ALc--e~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 51 MNRGDYASALQQGNKL-----AYPDLEPWLALC--EYRLGLGSALESRLNRLAR 97 (116)
T ss_dssp HHTTCHHHHHHHHTTS-----CCGGGHHHHHHH--HHHHTCHHHHHHHHHHHTT
T ss_pred HcchhHHHHHHhcCCC-----CCchHHHHHHHH--HHhcccHHHHHHHHHHHHh
Confidence 3444444444444433 134444443332 2334444444444434433
No 289
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=70.52 E-value=1.2e+02 Score=32.39 Aligned_cols=21 Identities=19% Similarity=0.029 Sum_probs=13.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhh
Q 038852 541 VRETFGKAGRGEEIERVLNAD 561 (851)
Q Consensus 541 L~~~~~~~G~~~eA~~ll~~~ 561 (851)
.+++++..|+++.|.++++.+
T Consensus 342 YA~lLA~qG~l~~A~~yL~~l 362 (399)
T 2pm7_A 342 FINLTTSTGNFELATEFLNSL 362 (399)
T ss_dssp HHHHHHTTTCHHHHHHHHHHS
T ss_pred HHHHHHhCCCHHHHHHHHHhC
Confidence 455666667777777766654
No 290
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=69.64 E-value=1.9e+02 Score=34.56 Aligned_cols=92 Identities=16% Similarity=0.056 Sum_probs=49.9
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHhcC--CccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 038852 250 NNLISGFLNLGN---LEKANELFDELKQRC--LVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLE 324 (851)
Q Consensus 250 ~~Li~~~~~~g~---~~~A~~~~~~~~~~~--~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~ 324 (851)
..++...|..|+ .++|.+.|+...... ......+...+.....+.|..++-..+++...+... ..--..++.
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~~~~---~~ek~~ll~ 766 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQAQL---VNEADKLRS 766 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHHCCS---HHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHccCC---HHHHHHHHH
Confidence 345666677776 456677777665432 112233344444445556666555555555554332 233345666
Q ss_pred HHHhCCCHHHHHHHHHHHHH
Q 038852 325 VLLKHEKKEEAQALFEQMLD 344 (851)
Q Consensus 325 ~~~~~g~~~~A~~l~~~m~~ 344 (851)
++....+.+...++++.++.
T Consensus 767 aL~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 767 ALACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp HHTTCCCHHHHHHHHHHTTC
T ss_pred HhCCCCCHHHHHHHHHHHhC
Confidence 66666776666666665554
No 291
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=69.13 E-value=1.1e+02 Score=31.40 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 038852 318 TCNTLLEVLLKHEKKEEAQALFEQMLDNH 346 (851)
Q Consensus 318 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~~ 346 (851)
++..-+....+.+++..|..+-+++++.+
T Consensus 200 aLr~AM~~a~K~KNy~tAa~fArrLLel~ 228 (320)
T 3mkr_B 200 VLRTALNLFFKLKNFRTAAAFARRLLELG 228 (320)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 44555667778888888888888888854
No 292
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=67.84 E-value=70 Score=28.85 Aligned_cols=55 Identities=4% Similarity=0.033 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchh
Q 038852 412 EEAEKLLREISTKSLSPD-VTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVS 466 (851)
Q Consensus 412 ~~A~~l~~~m~~~g~~pd-~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 466 (851)
+++.++|..|...|+-.. +..|......+...|++.+|.++|+..++.+-.|...
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 347777777777766544 4566777777777888888888888888777666444
No 293
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=67.44 E-value=32 Score=28.49 Aligned_cols=49 Identities=12% Similarity=0.061 Sum_probs=20.5
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 038852 185 YCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSR 240 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 240 (851)
+...|+|++|..+.+.. ..||...|..|. -.+.|-.+++...+.++...
T Consensus 49 LmNrG~Yq~Al~l~~~~-----c~pdlepw~ALc--e~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGN-----PWPALEPWFALC--EWHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHTTCHHHHHGGGTTC-----CCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTC
T ss_pred HHcchhHHHHHHhcCCC-----CCchHHHHHHHH--HHhcccHHHHHHHHHHHHhC
Confidence 33444555444444332 234444443332 23444444444444444433
No 294
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=65.68 E-value=86 Score=29.10 Aligned_cols=13 Identities=8% Similarity=-0.294 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHcC
Q 038852 358 TFNIMVNECFKHG 370 (851)
Q Consensus 358 ~~~~L~~~~~~~g 370 (851)
+-...+.++.+.+
T Consensus 123 vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 123 VRIAAAFALGEIG 135 (201)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 3333333333333
No 295
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=65.54 E-value=1.3e+02 Score=32.58 Aligned_cols=38 Identities=21% Similarity=0.024 Sum_probs=24.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 038852 407 ENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVE 444 (851)
Q Consensus 407 ~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g 444 (851)
+.++.+.|+.++.+|++.|..|....-..+..++...|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 45788999999999998877655444444444443333
No 296
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=64.37 E-value=54 Score=30.04 Aligned_cols=54 Identities=9% Similarity=0.164 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchh
Q 038852 413 EAEKLLREISTKSLSPD-VTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVS 466 (851)
Q Consensus 413 ~A~~l~~~m~~~g~~pd-~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 466 (851)
++.++|..|...|+-.. +..|...+..+...|++.+|.++|...++.+-.|...
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 36667777777665544 4566667777777778888888887777776666444
No 297
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=64.27 E-value=1.6e+02 Score=31.55 Aligned_cols=29 Identities=0% Similarity=-0.128 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 038852 283 VNATFMEWWFNQGKDKEAMQSYKSLMERN 311 (851)
Q Consensus 283 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~ 311 (851)
-...++.++....+.+...++++.++..+
T Consensus 269 ek~~ll~aL~~s~d~~ll~~~L~~~l~~~ 297 (419)
T 3rjo_A 269 EKSQIEFALCRTQNKEKLQWLLDESFKGD 297 (419)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhCCC
Confidence 34444555555555555555555555433
No 298
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=63.91 E-value=1.5e+02 Score=32.15 Aligned_cols=20 Identities=5% Similarity=-0.022 Sum_probs=10.5
Q ss_pred cCCHHHHHHHHHHHHhcCCC
Q 038852 224 AGRIGEAVDLLRDMLSRQLG 243 (851)
Q Consensus 224 ~g~~~~A~~l~~~m~~~g~~ 243 (851)
.++.+.|+.++.+|++.|..
T Consensus 268 gsd~daAl~~la~ml~~Ged 287 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGD 287 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHcCCC
Confidence 34555555555555555443
No 299
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=63.57 E-value=55 Score=34.07 Aligned_cols=24 Identities=13% Similarity=0.339 Sum_probs=14.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 038852 178 YNNLINTYCDEGKVDEGMNVFRRI 201 (851)
Q Consensus 178 ~~~Li~~~~~~g~~~~A~~l~~~~ 201 (851)
...++.-|...||.++|...++++
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHc
Confidence 345556666666666666666555
No 300
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=63.16 E-value=68 Score=28.94 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcc
Q 038852 230 AVDLLRDMLSRQLGA-DSLVYNNLISGFLNLGNLEKANELFDELKQRCLVY 279 (851)
Q Consensus 230 A~~l~~~m~~~g~~p-d~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~ 279 (851)
+.++|..|...|+.. -...|...+..+...|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 555555555544332 22445555555555555555555555555554444
No 301
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=62.77 E-value=91 Score=28.50 Aligned_cols=51 Identities=4% Similarity=0.109 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 038852 194 GMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGA 244 (851)
Q Consensus 194 A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p 244 (851)
+.++|..|...+-..--...|...+..+...|++.+|.++|...++.+..|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 455555554443222233445555555556666666666666666655544
No 302
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=61.78 E-value=1.4e+02 Score=33.12 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=20.8
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC
Q 038852 464 VVSFGTKVFNELITKGKVAECAPILTKMGEKDPK 497 (851)
Q Consensus 464 ~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~ 497 (851)
+......|.+.|.+.|++-+|.+++..+-..+..
T Consensus 216 ~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~~~ 249 (525)
T 3i5p_A 216 SLKISNILWVYYSRRSKFFESAEILYRLATSNFD 249 (525)
T ss_dssp --CHHHHHHTHHHHCCSHHHHHHHHHHHHSSSSC
T ss_pred chhHHHHHHHHHHHcccHHHHHHHHHHHHhCCCC
Confidence 4445556666777777777777777766655433
No 303
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=60.93 E-value=7 Score=39.08 Aligned_cols=23 Identities=4% Similarity=0.072 Sum_probs=11.4
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCC
Q 038852 476 ITKGKVAECAPILTKMGEKDPKP 498 (851)
Q Consensus 476 ~~~g~~~~A~~ll~~m~~~~~~p 498 (851)
+..++.....++++.+.+.|..+
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~ 212 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADV 212 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCS
T ss_pred HHccccchHHHHHHHHHHcCCCC
Confidence 34455444445555555555443
No 304
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=59.55 E-value=19 Score=38.84 Aligned_cols=17 Identities=12% Similarity=0.012 Sum_probs=9.4
Q ss_pred HHHHcCChHHHHHHHHH
Q 038852 365 ECFKHGKFSEAIETFKK 381 (851)
Q Consensus 365 ~~~~~g~~~~A~~~~~~ 381 (851)
..+..|+.+-+..+++.
T Consensus 218 ~A~~~~~~~~~~~Ll~~ 234 (437)
T 1n11_A 218 IAAKQNQVEVARSLLQY 234 (437)
T ss_dssp HHHHTTCHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHc
Confidence 34456666655555543
No 305
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=59.45 E-value=1.6e+02 Score=30.04 Aligned_cols=63 Identities=16% Similarity=0.262 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCC
Q 038852 398 YNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVER--IDDALELFNRMVESGL 461 (851)
Q Consensus 398 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~--~~~A~~~~~~m~~~~~ 461 (851)
...++.-|...|+.++|...++++..-.+. ...+...+..++-+.++ .+...+++..+.+.++
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ 233 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSST 233 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCC
Confidence 345666666777777777777776421111 12233333333333222 2344555555555443
No 306
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=59.22 E-value=76 Score=30.61 Aligned_cols=55 Identities=7% Similarity=0.151 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccchh
Q 038852 412 EEAEKLLREISTKSLSPD-VTTFRTLIDAYLKVERIDDALELFNRMVESGLRVVVS 466 (851)
Q Consensus 412 ~~A~~l~~~m~~~g~~pd-~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 466 (851)
+++.++|..|...|+-.. ...|......+...|++.+|.++|+..++.+-.|...
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 186 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLR 186 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 567788888888776654 5567788888888999999999999988887766444
No 307
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=57.29 E-value=77 Score=27.62 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=13.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 038852 215 RHLTKGFVDAGRIGEAVDLLRDML 238 (851)
Q Consensus 215 ~~Li~~~~~~g~~~~A~~l~~~m~ 238 (851)
..++.-|...|+.++|...++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 345555555566666666665553
No 308
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=56.88 E-value=51 Score=31.36 Aligned_cols=27 Identities=26% Similarity=0.219 Sum_probs=14.5
Q ss_pred cCCHHHHHHHHHHHHHcCCccchhHHH
Q 038852 443 VERIDDALELFNRMVESGLRVVVSFGT 469 (851)
Q Consensus 443 ~g~~~~A~~~~~~m~~~~~~~~~~~~~ 469 (851)
-.+.+.|+-++.+|++.|..+...+-.
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRR 74 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRR 74 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 355666666666666655444443333
No 309
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=56.70 E-value=2.4e+02 Score=31.19 Aligned_cols=67 Identities=10% Similarity=0.203 Sum_probs=36.5
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHH----HHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 038852 280 DGVVNATFMEWWFNQGKDKEAMQS----YKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNH 346 (851)
Q Consensus 280 d~~~~~~li~~~~~~g~~~~A~~l----~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~ 346 (851)
|......|-+.+...|..++-+++ ++..+++....+......|-..|.+.+++-+|.+++..+-..+
T Consensus 177 DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~ 247 (525)
T 3i5p_A 177 DRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATSN 247 (525)
T ss_dssp CHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSS
T ss_pred hHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCC
Confidence 444445555555555555444332 2222222222334456667777788888888888887776653
No 310
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=55.68 E-value=1.2e+02 Score=27.46 Aligned_cols=109 Identities=13% Similarity=0.081 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 038852 445 RIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVD 524 (851)
Q Consensus 445 ~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~ 524 (851)
..+....+++++.+.|.-++..+...++......|. ....+..++..+|+..+ +....+..+ .....+.|.++.+
T Consensus 45 ~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g~--G~~~I~~eL~~KGI~~~--~i~~al~~~-~~d~~~~a~~l~~ 119 (159)
T 3c1d_A 45 TAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKGY--GPARIRQELNQKGISRE--ATEKAMREA-DIDWAALARDQAT 119 (159)
T ss_dssp CHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTTC--CHHHHHHHHHHTTCCHH--HHHHHHHHH-CCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHcCCCHH--HHHHHHHHc-CHhHHHHHHHHHH
Confidence 345566677777777777777766666666655442 34456677777777532 222222222 1123344555544
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHH
Q 038852 525 QMMKYGVGITPALQDFVRETFGKAGR-GEEIERVL 558 (851)
Q Consensus 525 ~m~~~g~~~~~~~~~~L~~~~~~~G~-~~eA~~ll 558 (851)
+-.......+.....-++..+.+.|- ++.+..++
T Consensus 120 kk~~~~~~~~~~~~~K~~~~L~rrGF~~~~i~~~l 154 (159)
T 3c1d_A 120 RKYGEPLPTVFSEKVKIQRFLLYRGYLMEDIQDIW 154 (159)
T ss_dssp HHHCSSCCCSHHHHHHHHHHHHHTTCCHHHHTTCC
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 33222122344455556667777664 33333333
No 311
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=55.39 E-value=1.7e+02 Score=29.01 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=24.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHH
Q 038852 216 HLTKGFVDAGRIGEAVDLLRDMLSRQ---LGADSLVYNNLISGF 256 (851)
Q Consensus 216 ~Li~~~~~~g~~~~A~~l~~~m~~~g---~~pd~~~~~~Li~~~ 256 (851)
.+++.....++++++++.++++.+.+ ...+..-.+.|..+|
T Consensus 33 ~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAy 76 (260)
T 2npm_A 33 YMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAY 76 (260)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHH
Confidence 45555566677777777777777665 455555555555554
No 312
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=54.94 E-value=66 Score=38.84 Aligned_cols=48 Identities=15% Similarity=0.078 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc----chhHHHHHHHHHHHcC
Q 038852 432 TFRTLIDAYLKVERIDDALELFNRMVESGLRV----VVSFGTKVFNELITKG 479 (851)
Q Consensus 432 ~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~----~~~~~~~L~~~~~~~g 479 (851)
-|..++..+.+.+.++.++++-+.++..-... ....+..++++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 57888999999999999999999988643222 2345566777776554
No 313
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=53.52 E-value=33 Score=33.84 Aligned_cols=13 Identities=8% Similarity=0.069 Sum_probs=6.0
Q ss_pred HcCChHHHHHHHH
Q 038852 368 KHGKFSEAIETFK 380 (851)
Q Consensus 368 ~~g~~~~A~~~~~ 380 (851)
..|+.+-+..+++
T Consensus 157 ~~~~~~~v~~Ll~ 169 (285)
T 1wdy_A 157 EKGHVEVLKILLD 169 (285)
T ss_dssp HHTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 4455544444443
No 314
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=53.41 E-value=1.6e+02 Score=28.30 Aligned_cols=113 Identities=10% Similarity=0.053 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHHcCCccchhHHHHHHHHHHH-cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 038852 445 RIDDALELFNRMVESGLRVVVSFGTKVFNELIT-KGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIV 523 (851)
Q Consensus 445 ~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~-~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~ 523 (851)
..+.+..+++++.+.|.-++..+...+++.... .|. ....+..++..+|+..+ +....+..+......+.|..+.
T Consensus 91 ~~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~--G~~~I~~eL~~KGI~~~--~I~~al~~~~~~~e~e~a~~l~ 166 (221)
T 3d5l_A 91 PEEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK--GPGIIRQHLRQKGIGES--DIDDALTQFTPEVQAELAKKLA 166 (221)
T ss_dssp CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHTTCCHH--HHHHHGGGCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc--cHHHHHHHHHHcCCCHH--HHHHHHHhCCHHHHHHHHHHHH
Confidence 345666778888888877777776666666555 233 24456667777777522 2222222111111233455555
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHhh
Q 038852 524 DQMMKYGVGIT-PALQDFVRETFGKAG-RGEEIERVLNAD 561 (851)
Q Consensus 524 ~~m~~~g~~~~-~~~~~~L~~~~~~~G-~~~eA~~ll~~~ 561 (851)
++-.......+ .....-++..+.+.| .++.+..+++++
T Consensus 167 ~Kk~~~~~~~~~~~~k~K~~~~L~rrGFs~~~I~~vl~~~ 206 (221)
T 3d5l_A 167 LKLFRRYRNQPERRREQKVQQGLTTKGFSSSVYEMIKDEV 206 (221)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHTTC-
T ss_pred HHHHhhccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHhc
Confidence 55433211222 344556777777777 456666666554
No 315
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=52.89 E-value=1.8e+02 Score=28.61 Aligned_cols=15 Identities=0% Similarity=-0.241 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHcC
Q 038852 356 SDTFNIMVNECFKHG 370 (851)
Q Consensus 356 ~~~~~~L~~~~~~~g 370 (851)
..+-...+.++.+.+
T Consensus 142 ~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 142 TNVRRATAFAISVIN 156 (280)
T ss_dssp HHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHhcC
Confidence 333334444444443
No 316
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=52.54 E-value=89 Score=29.50 Aligned_cols=18 Identities=39% Similarity=0.645 Sum_probs=11.2
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 038852 443 VERIDDALELFNRMVESG 460 (851)
Q Consensus 443 ~g~~~~A~~~~~~m~~~~ 460 (851)
-.+.+.|+-++.+|++.|
T Consensus 27 GSDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG 44 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHcC
Confidence 455666666666666666
No 317
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=52.50 E-value=57 Score=33.42 Aligned_cols=16 Identities=6% Similarity=0.044 Sum_probs=9.8
Q ss_pred HHHcCChHHHHHHHHH
Q 038852 366 CFKHGKFSEAIETFKK 381 (851)
Q Consensus 366 ~~~~g~~~~A~~~~~~ 381 (851)
.+..|+.+-+..++++
T Consensus 175 A~~~g~~~~v~~LL~~ 190 (337)
T 4g8k_A 175 AAEKGHVEVLKILLDE 190 (337)
T ss_dssp HHHHTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHhc
Confidence 3466777666666654
No 318
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=52.37 E-value=76 Score=34.27 Aligned_cols=111 Identities=12% Similarity=0.127 Sum_probs=69.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 038852 118 GDLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNV 197 (851)
Q Consensus 118 g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l 197 (851)
.+.+.|.++..+. ++.--...|..-.+.+...|+|++|.++-.... .|+-.+..|.+.+-.+=..-|...--+.+
T Consensus 343 ~n~~lA~~lA~R~---~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP--~giLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 343 QNPDLALRMAVRN---NLAGAEELFARKFNALFAQGNYSEAAKVAANAP--KGILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp CCHHHHHHHHHHT---TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSG--GGSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred CCHHHHHHHHHhc---CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCc--cccccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 5677776665543 444455567777778888999999988876652 34556666665554433344555666777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 038852 198 FRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLR 235 (851)
Q Consensus 198 ~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~ 235 (851)
|..+++.+.. |..--..|++.....|+.+...+.+.
T Consensus 418 F~~Ll~~g~L--n~~ESlEl~r~vL~q~r~~llekWl~ 453 (494)
T 1bpo_A 418 FGILLDQGQL--NKYESLELCRPVLQQGRKQLLEKWLK 453 (494)
T ss_dssp HHHHHHHSCC--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhccCcc--chHHhhHHhHHHHhccHHHHHHHHHh
Confidence 7777777533 55444455566666666555554443
No 319
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=52.32 E-value=1.5e+02 Score=27.62 Aligned_cols=153 Identities=13% Similarity=0.071 Sum_probs=78.8
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038852 137 PTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRH 216 (851)
Q Consensus 137 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~ 216 (851)
+|...-...+..+.+.++. +++..+.+++.. +|...-...+.++.+.++. +++..+.+++. .+|..+-..
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~~----~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~----~~~~~vr~~ 100 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALKD----EDAWVRRAAADALGQIGDE-RAVEPLIKALK----DEDGWVRQS 100 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC----SCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT----CSSHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHcC----CCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc----CCCHHHHHH
Confidence 4555555566666666663 344444444332 4555555566666666653 34444444432 235556666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCC
Q 038852 217 LTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGK 296 (851)
Q Consensus 217 Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~ 296 (851)
.+.++.+.++. +++..+.++++ .+|..+-...+.++.+.|+.+ +...+..+++. .+..+....+.++.+.++
T Consensus 101 a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 101 AAVALGQIGDE-RAVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALKD---EDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHhCcH-HHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHcC---CCHHHHHHHHHHHHHhCc
Confidence 66666666653 34444444443 235556666666666666533 34444444421 244455555555555554
Q ss_pred HHHHHHHHHHHH
Q 038852 297 DKEAMQSYKSLM 308 (851)
Q Consensus 297 ~~~A~~l~~~~~ 308 (851)
.+++..+..++
T Consensus 173 -~~~~~~L~~~l 183 (211)
T 3ltm_A 173 -ERVRAAMEKLA 183 (211)
T ss_dssp -HHHHHHHHHHH
T ss_pred -hhHHHHHHHHH
Confidence 33444444443
No 320
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=52.25 E-value=61 Score=29.29 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=13.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 038852 215 RHLTKGFVDAGRIGEAVDLLRDML 238 (851)
Q Consensus 215 ~~Li~~~~~~g~~~~A~~l~~~m~ 238 (851)
..++.-|...|+.++|...++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 345555555666666666666553
No 321
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=51.71 E-value=50 Score=39.93 Aligned_cols=131 Identities=11% Similarity=0.097 Sum_probs=73.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 038852 145 IIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDA 224 (851)
Q Consensus 145 li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~ 224 (851)
++..|...|.++-|.++...+ ..+...-..++.+|..+|++++|..+|+++-. ++..+.....
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~------~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~--gl~~~~~~~~--------- 878 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQFA--------- 878 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC------CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--TTCSSCCSCG---------
T ss_pred HHHHHHHhcHHHHHHHHHhhc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh--hcccCccccc---------
Confidence 666777788888776654433 23444445788889999999999999987631 1211100000
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccc----hhhHHHHHHHHHHcC
Q 038852 225 GRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYD----GVVNATFMEWWFNQG 295 (851)
Q Consensus 225 g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d----~~~~~~li~~~~~~g 295 (851)
..+....++.... .. .....-|..++..+.+.+-++.+.++.+.++..-...| ..+|..+.++++..|
T Consensus 879 -~~~~~~~ll~~~e-~~-~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 879 -VLREFQEIAEKYH-HQ-NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp -GGHHHHHHHHHTT-TC-SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred -chhhhhhccCccc-cc-chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0011111111111 10 11223577778888888888888887777775422212 345666666666544
No 322
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=51.33 E-value=2.5e+02 Score=29.88 Aligned_cols=160 Identities=12% Similarity=-0.008 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHcCC---hHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038852 357 DTFNIMVNECFKHGK---FSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTF 433 (851)
Q Consensus 357 ~~~~~L~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~ 433 (851)
.....++...|..|+ .++|.+.|+..........+.+|.... +-+.. .+..++-..+++...+. .+..--
T Consensus 198 ~lR~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~---Vy~~~-~~~~~~~~~l~~~y~~s---~~~~ek 270 (419)
T 3rjo_A 198 MLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLA---VFAVG-AQSTEGWDFLYSKYQFS---LSSTEK 270 (419)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHH---HHHHH-TTSHHHHHHHHHHHHHC---CCHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCccee---EEeee-eCCHHHHHHHHHHHhcC---CCHHHH
Confidence 344556667778776 567788888876543222344554332 11111 22333444555555543 345556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC-ccchhHHHHHHHHHHHc-CCHHHHHHHHHH----HhhCCCCCCHHHHHHHH
Q 038852 434 RTLIDAYLKVERIDDALELFNRMVESGL-RVVVSFGTKVFNELITK-GKVAECAPILTK----MGEKDPKPDFLIYDVVV 507 (851)
Q Consensus 434 ~~Ll~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~L~~~~~~~-g~~~~A~~ll~~----m~~~~~~pd~~~~~~ll 507 (851)
..++.+++...+.+...++++.++..++ +... ... ++.+.... .-.+.|.+++.+ +.++ +..+...+..++
T Consensus 271 ~~ll~aL~~s~d~~ll~~~L~~~l~~~~ir~qD-~~~-~~~~v~~n~~g~~~aw~fl~~nw~~l~~~-~~~~~~~~~~~i 347 (419)
T 3rjo_A 271 SQIEFALCRTQNKEKLQWLLDESFKGDKIKTQE-FPQ-ILTLIGRNPVGYPLAWQFLRKNWNKLVQK-FELGSSSIAHMV 347 (419)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHTSSSCGGG-HHH-HHHHHHTSTTTHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHhCCCCCchhH-HHH-HHHHHhcCcchHHHHHHHHHHHHHHHHHH-hCcCchhHHHHH
Confidence 6778888888888888888888887553 3322 222 33333332 223445544432 3322 112334566666
Q ss_pred HHHHhcCChHHHHHHHHHH
Q 038852 508 RGLCNEGLFDMSKDIVDQM 526 (851)
Q Consensus 508 ~a~~~~g~~~~A~~~~~~m 526 (851)
......-.-++-++-++..
T Consensus 348 ~~~~~~~~t~~~l~e~~~F 366 (419)
T 3rjo_A 348 MGTTNQFSTRTRLEEVKGF 366 (419)
T ss_dssp HHTTTTCCSHHHHHHHHHH
T ss_pred HHHhhcCCCHHHHHHHHHH
Confidence 6554433333333333333
No 323
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=50.49 E-value=56 Score=27.06 Aligned_cols=75 Identities=13% Similarity=-0.025 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 038852 119 DLDAASYLARQAVFSRIRPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVF 198 (851)
Q Consensus 119 ~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~ 198 (851)
..++|..+.+-+...+. ...+-..-+..+.+.|+|++|..+.+.. ..||.+.|.+|.. .+.|-.+++...+
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN-----PWPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC-----CCGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 45556555554443331 1111112222344566666666655433 2456666655443 4556555555555
Q ss_pred HHHH
Q 038852 199 RRII 202 (851)
Q Consensus 199 ~~~~ 202 (851)
.++.
T Consensus 92 ~~la 95 (115)
T 2uwj_G 92 AGLG 95 (115)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 324
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=50.14 E-value=97 Score=26.97 Aligned_cols=64 Identities=19% Similarity=0.221 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCC--HHHHHHHHHHHHHhcC
Q 038852 248 VYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGK--DKEAMQSYKSLMERNF 312 (851)
Q Consensus 248 ~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~--~~~A~~l~~~~~~~~~ 312 (851)
....++.-|...||.++|.+.++++..-... ...+...+..++-+.++ .+.+..++..+.+.++
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 3456788888899999999999987532221 23333444444444332 3456667777766655
No 325
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=49.62 E-value=1.7e+02 Score=31.75 Aligned_cols=63 Identities=6% Similarity=0.224 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcc--c-------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 038852 248 VYNNLISGFLNLGNLEKANELFDELKQRCLVY--D-------GVVNATFMEWWFNQGKDKEAMQSYKSLMER 310 (851)
Q Consensus 248 ~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~--d-------~~~~~~li~~~~~~g~~~~A~~l~~~~~~~ 310 (851)
..+.|...|.+.++...+..+++.+...+..+ + +.....++..++..+++.+|.+.|..+.+.
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 45678889999999999999998887765421 1 122334556677778888888777776655
No 326
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=48.57 E-value=67 Score=31.42 Aligned_cols=22 Identities=9% Similarity=0.060 Sum_probs=13.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 038852 181 LINTYCDEGKVDEGMNVFRRII 202 (851)
Q Consensus 181 Li~~~~~~g~~~~A~~l~~~~~ 202 (851)
-++.+....++++|++++++..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 3455566666666666666554
No 327
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=47.88 E-value=55 Score=32.03 Aligned_cols=91 Identities=14% Similarity=0.087 Sum_probs=44.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCcc----chhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 038852 435 TLIDAYLKVERIDDALELFNRMVES--GLRV----VVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVR 508 (851)
Q Consensus 435 ~Ll~~~~~~g~~~~A~~~~~~m~~~--~~~~----~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~ 508 (851)
--++.+....++++|.+++++..+. +.+. ........+..-+....-.-+..+.+++ .. ..+.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHH
Confidence 3567777788888888888776642 1111 0011111122222222222222333333 22 334555555666
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 038852 509 GLCNEGLFDMSKDIVDQMMK 528 (851)
Q Consensus 509 a~~~~g~~~~A~~~~~~m~~ 528 (851)
.+.+.|+-++|.++|-+...
T Consensus 100 ~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHH
Confidence 66777777777777666553
No 328
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=47.68 E-value=2e+02 Score=27.69 Aligned_cols=52 Identities=23% Similarity=0.357 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcc
Q 038852 228 GEAVDLLRDMLSRQLGA-DSLVYNNLISGFLNLGNLEKANELFDELKQRCLVY 279 (851)
Q Consensus 228 ~~A~~l~~~m~~~g~~p-d~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~ 279 (851)
+++.++|..|...|+.. -...|...+..+...|++.+|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 35555666666555432 23455556666666666666666666666655444
No 329
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=47.58 E-value=80 Score=30.06 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=30.1
Q ss_pred HHHHHHHH---hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 038852 399 NNIIARYC---ENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVE 444 (851)
Q Consensus 399 ~~li~~~~---~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g 444 (851)
..+|.++. +-.|.|.|+-.+.+|++.|..|....-..++.+....|
T Consensus 36 Yd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 36 FDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34445543 46789999999999999887655444444444444444
No 330
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=46.72 E-value=1.7e+02 Score=26.60 Aligned_cols=74 Identities=15% Similarity=0.191 Sum_probs=42.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCC--CHHHHHHHHH------HHHhCCCHHHHHHHHHHHHHc--CCCCCCCccCHHHHH
Q 038852 291 WFNQGKDKEAMQSYKSLMERNFRM--TPATCNTLLE------VLLKHEKKEEAQALFEQMLDN--HQPPNIQAVNSDTFN 360 (851)
Q Consensus 291 ~~~~g~~~~A~~l~~~~~~~~~~~--~~~~~~~Li~------~~~~~g~~~~A~~l~~~m~~~--~~~p~~~~~~~~~~~ 360 (851)
++..|++-+|-++|+.+-.....+ ....|..||. ...+.|+...|..+|.+++.. ...+....+|...+.
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~~~~~GIDv~~L~ 121 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVPNDYYGVDLLDVR 121 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSCTTGGGBCHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCccCCcCHHHHH
Confidence 334477777777777766554444 3344555555 224568888888888888652 233333333444444
Q ss_pred HHHH
Q 038852 361 IMVN 364 (851)
Q Consensus 361 ~L~~ 364 (851)
..+.
T Consensus 122 ~~~~ 125 (161)
T 2ijq_A 122 TTVT 125 (161)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 331
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=46.22 E-value=2.9e+02 Score=29.20 Aligned_cols=49 Identities=10% Similarity=0.012 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHH
Q 038852 317 ATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNE 365 (851)
Q Consensus 317 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~ 365 (851)
.-|..++..+.+.+++.+|++.+.++-.---.-+....|.+.|..++.+
T Consensus 304 YPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~~eI 352 (489)
T 4gq4_A 304 YPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEV 352 (489)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHHH
T ss_pred cceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccchHHHHHHHHHH
Confidence 5566677777777777777777776543111111112255666555443
No 332
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=46.15 E-value=1.4e+02 Score=26.89 Aligned_cols=48 Identities=13% Similarity=0.209 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHhhC----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038852 480 KVAECAPILTKMGEK----DPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMK 528 (851)
Q Consensus 480 ~~~~A~~ll~~m~~~----~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~ 528 (851)
|++.+..+...++.. |.. .......-+..+++.|+.+.+..++..+..
T Consensus 70 D~~~l~~~aH~LKGss~~lGa~-~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ 121 (153)
T 3us6_A 70 DFKKVDAHVHQFKGSSASIGAQ-RVKNSCVAFRNFCEEQNIDACRRCLQQVKQ 121 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555554432 221 222333445556677777777777777654
No 333
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=46.13 E-value=1.2e+02 Score=28.65 Aligned_cols=38 Identities=11% Similarity=-0.014 Sum_probs=21.8
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 038852 223 DAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLG 260 (851)
Q Consensus 223 ~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g 260 (851)
+..+.+.|+-++.+|++.|..|....-..++.+....|
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 35677777777777777766544444444444443333
No 334
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=46.07 E-value=2.6e+02 Score=28.54 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038852 282 VVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDN 345 (851)
Q Consensus 282 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 345 (851)
.+....|....|.+++..|..+-+++++.+..+ . ..++|.+++......
T Consensus 199 LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~--~-------------~~~qArkil~~ce~~ 247 (320)
T 3mkr_B 199 LVLRTALNLFFKLKNFRTAAAFARRLLELGPKP--E-------------VAQQTRKILSACEKN 247 (320)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCH--H-------------HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH--H-------------HHHHHHHHHHHHhcC
Confidence 345566777889999999999999998876421 1 234566777666554
No 335
>2zhj_A Annexin A4; zynogen granule, membrane binding protein, metal binding protein, calcium, calcium/phospholipid-binding; 1.35A {Rattus norvegicus} PDB: 2zhi_A 2zoc_A 1ann_A 1i4a_A 1aow_A
Probab=45.90 E-value=2.6e+02 Score=28.57 Aligned_cols=43 Identities=9% Similarity=-0.138 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038852 482 AECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMM 527 (851)
Q Consensus 482 ~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~ 527 (851)
-.|..+++.|...| .|..++..++.. ...-+.....+.|+++-
T Consensus 252 ~~A~~L~~a~~g~G--tde~~lirilv~-Rs~~dl~~i~~~Y~~~y 294 (322)
T 2zhj_A 252 YFAERLYKSMKGLG--TDDSTLIRVMVS-RAEIDMLDIRANFKRLY 294 (322)
T ss_dssp HHHHHHHHHHSSSS--CCHHHHHHHHHH-HTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCC--CCHHHHHHHHHH-cCHHHHHHHHHHHHHHh
Confidence 35666677776533 355555544432 22345556666665544
No 336
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=45.77 E-value=2.3e+02 Score=27.92 Aligned_cols=55 Identities=11% Similarity=0.074 Sum_probs=25.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHH
Q 038852 288 MEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLK-HEKKEEAQALFEQM 342 (851)
Q Consensus 288 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~-~g~~~~A~~l~~~m 342 (851)
+...-..+++++..+..+.+.+.+...+..-.|.|..+|-. .|....+++++..+
T Consensus 38 AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissi 93 (261)
T 3ubw_A 38 AKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSI 93 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHH
Confidence 33344455555555555555555555554444444444321 13333444444433
No 337
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=45.73 E-value=1.6e+02 Score=27.68 Aligned_cols=37 Identities=14% Similarity=0.345 Sum_probs=20.1
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 038852 223 DAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLG 260 (851)
Q Consensus 223 ~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g 260 (851)
+..+.+.|+-++.+|++.| .|....-..++.+....|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 3456777777777777776 443333333344443333
No 338
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent hexamerization switch E76, low calcium form; 1.93A {Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Probab=45.64 E-value=2.6e+02 Score=28.48 Aligned_cols=41 Identities=10% Similarity=-0.065 Sum_probs=20.7
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038852 484 CAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMM 527 (851)
Q Consensus 484 A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~ 527 (851)
|..+++.|... ..|..++..++.. ...-+.....+.|.++-
T Consensus 249 A~~L~~am~g~--Gtd~~~Liriiv~-rse~dl~~Ik~~y~~~y 289 (315)
T 1dm5_A 249 AERLHHAMKGL--GTSDKTLIRILVS-RSEIDLANIKETFQAMY 289 (315)
T ss_dssp HHHHHHHHCTT--CCCHHHHHHHHHH-HTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhcC--CCCHHHHhHHHHh-cCHHHHHHHHHHHHHHh
Confidence 55555555543 3355555544433 22345566666666544
No 339
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=45.02 E-value=5e+02 Score=31.54 Aligned_cols=12 Identities=0% Similarity=-0.067 Sum_probs=6.1
Q ss_pred HHHHHHHcCCHH
Q 038852 217 LTKGFVDAGRIG 228 (851)
Q Consensus 217 Li~~~~~~g~~~ 228 (851)
+++++...|-..
T Consensus 345 ~lDal~~aGT~~ 356 (1056)
T 1lsh_A 345 ILDAVPAMATSE 356 (1056)
T ss_dssp HHHHHHHHCSHH
T ss_pred HHHHhHhcCCHH
Confidence 455555555443
No 340
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=44.92 E-value=31 Score=33.05 Aligned_cols=10 Identities=0% Similarity=-0.240 Sum_probs=4.1
Q ss_pred HHHHhcCCHH
Q 038852 254 SGFLNLGNLE 263 (851)
Q Consensus 254 ~~~~~~g~~~ 263 (851)
...++.|+.+
T Consensus 47 ~~A~~~~~~~ 56 (240)
T 3eu9_A 47 HWAAINNRID 56 (240)
T ss_dssp HHHHHTTCHH
T ss_pred HHHHHhCCHH
Confidence 3334444443
No 341
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=44.88 E-value=2.4e+02 Score=27.82 Aligned_cols=60 Identities=15% Similarity=0.128 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHH
Q 038852 213 TYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLN-LGNLEKANELFDEL 272 (851)
Q Consensus 213 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~-~g~~~~A~~~~~~~ 272 (851)
.+..+++..-..+++++.++.++++.+.+...+..-.+.|-.+|-. .|....+.+++..+
T Consensus 33 ~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissi 93 (261)
T 3ubw_A 33 DLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSI 93 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHH
Confidence 3444555566667777777777777766666666555555555532 23334444444443
No 342
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=44.87 E-value=74 Score=33.06 Aligned_cols=27 Identities=15% Similarity=0.358 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 038852 213 TYRHLTKGFVDAGRIGEAVDLLRDMLS 239 (851)
Q Consensus 213 ~~~~Li~~~~~~g~~~~A~~l~~~m~~ 239 (851)
....++.-|...|+.++|...++++..
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~ 39 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELAS 39 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 456778888888899988888887753
No 343
>1hm6_A Annexin 1; phospholipid/Ca(2+)-binding protein, calcium-free form, FULL-length protein comprising protein core and N-terminal domain, metal; 1.80A {Sus scrofa} SCOP: a.65.1.1 PDB: 1mcx_A 1ain_A 1bo9_A
Probab=44.77 E-value=1.3e+02 Score=31.40 Aligned_cols=42 Identities=7% Similarity=-0.088 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038852 483 ECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMM 527 (851)
Q Consensus 483 ~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~ 527 (851)
.|..+++.|... ..|..++..++.. ...-++....+.|+++-
T Consensus 278 ~A~~L~~A~~g~--GTde~~lirIlvs-Rs~~dL~~I~~~Y~~~y 319 (346)
T 1hm6_A 278 FAEKLHQAMKGI--GTRHKTLIRIMVS-RSEIDMNDIKACYQKLY 319 (346)
T ss_dssp HHHHHHHHHSSS--SCCHHHHHHHHHH-TTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC--CCCHHHHhHHHhh-CCHHHHHHHHHHHHHHh
Confidence 355666666543 3355554443322 12234555555555443
No 344
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=44.33 E-value=1.2e+02 Score=37.55 Aligned_cols=83 Identities=11% Similarity=-0.022 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 038852 482 AECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNAD 561 (851)
Q Consensus 482 ~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~~ 561 (851)
++..+.|.++.+---.-|.......+.-....+++..|++++.++++.. ++.+++..++.++...|--.-+.-+=+.+
T Consensus 1266 ~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k--~~~~~~~~~~~~~~~l~w~h~~~~~~~~~ 1343 (1354)
T 3lxu_X 1266 AEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEK--RTRDHFVELAAINGALGHEHIRTVINRMM 1343 (1354)
T ss_dssp HHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHcCCHHHHHHHHhhh
Confidence 3445555555553111132233333333346788999999999998765 57788888888887777544333333333
Q ss_pred hhcCC
Q 038852 562 RWGYA 566 (851)
Q Consensus 562 ~~~~~ 566 (851)
.-.||
T Consensus 1344 ~~~~p 1348 (1354)
T 3lxu_X 1344 ITAFP 1348 (1354)
T ss_dssp HHHSC
T ss_pred hhhCc
Confidence 34444
No 345
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=44.23 E-value=3e+02 Score=29.11 Aligned_cols=99 Identities=11% Similarity=0.027 Sum_probs=51.1
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhc----CCCCHHHHHHH
Q 038852 250 NNLISGFLNLGN---LEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERN----FRMTPATCNTL 322 (851)
Q Consensus 250 ~~Li~~~~~~g~---~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~----~~~~~~~~~~L 322 (851)
..|+..+...|. +-.|+--+.++.+....++... ++.+|.+++... -.-.+.-|..+
T Consensus 261 q~LLWlLyd~GhL~rYPmALgnLgDLEe~~pt~gr~~----------------~~~L~~~AI~sa~~~Y~n~HvYPYtYl 324 (550)
T 3u84_A 261 QKLLWLLYDLGHLERYPMALGNLADLEELEPTPGRPD----------------PLTLYHKGIASAKTYYRDEHIYPYMYL 324 (550)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTCCC----------------HHHHHHHHHHHHHHHSTTCCSHHHHHH
T ss_pred HHHHHHHHhccchhhCchhhcchhhHhhcCCCCCCCC----------------HHHHHHHHHHHHHHHhccCCccceeec
Confidence 345666666654 4456666666655444332111 334444433211 11123567777
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHH
Q 038852 323 LEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVN 364 (851)
Q Consensus 323 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~ 364 (851)
+..+.+++++.+|+..+.++-+---.-+....|.++|..++.
T Consensus 325 gGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~e 366 (550)
T 3u84_A 325 AGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFE 366 (550)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHH
T ss_pred chhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHH
Confidence 888888888888888887765421111111225555555443
No 346
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=44.22 E-value=66 Score=29.02 Aligned_cols=64 Identities=19% Similarity=0.221 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCC--HHHHHHHHHHHHHhcC
Q 038852 248 VYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGK--DKEAMQSYKSLMERNF 312 (851)
Q Consensus 248 ~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~--~~~A~~l~~~~~~~~~ 312 (851)
....++.-|...||.++|.+.++++..-... ...+...+..++-+.++ .+.+..++..+.+.++
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 3556888888899999999999988532221 23333444444444322 3456666766666654
No 347
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=42.91 E-value=1.2e+02 Score=28.55 Aligned_cols=38 Identities=21% Similarity=0.014 Sum_probs=23.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 038852 407 ENEMLEEAEKLLREISTKSLSPDVTTFRTLIDAYLKVE 444 (851)
Q Consensus 407 ~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g 444 (851)
+-.|.|.|+-.+.+|++.|..|....-..++.+....|
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 45678888888888888776554444444444444333
No 348
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=42.52 E-value=3.9e+02 Score=33.14 Aligned_cols=40 Identities=10% Similarity=0.079 Sum_probs=28.4
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChH
Q 038852 327 LKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFS 373 (851)
Q Consensus 327 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~ 373 (851)
..++++..|++++.++++.. + ....|..++.++...|--.
T Consensus 1295 ~~~~~~g~~~k~l~k~~~~k--~-----~~~~~~~~~~~~~~l~w~h 1334 (1354)
T 3lxu_X 1295 YAHGHYGRMYKYVVKLIEEK--R-----TRDHFVELAAINGALGHEH 1334 (1354)
T ss_dssp HHHTCHHHHHHHHHHHHHHT--C-----CHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHHHHhcc--c-----cHHHHHHHHHHHHHcCCHH
Confidence 35677888888888887653 3 5667777788777777643
No 349
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=41.74 E-value=2.1e+02 Score=26.39 Aligned_cols=112 Identities=8% Similarity=0.092 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038852 448 DALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMM 527 (851)
Q Consensus 448 ~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~ 527 (851)
....+++++.+.|.-++..+...++......|.+ ....+..++..+|+.. .+....+..+......+.|..++++-.
T Consensus 51 ~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~~--~~I~~al~~~~~~de~e~a~~l~~Kk~ 127 (177)
T 3e3v_A 51 YISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGIDD--NIAEDALILYTDKLQVEKGVTLAEKLA 127 (177)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCCH--HHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCCH--HHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 3444555555555555555554454444433322 1233444555555532 221112211111111233444444332
Q ss_pred Hc-CCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhhh
Q 038852 528 KY-GVGITPALQDFVRETFGKAG-RGEEIERVLNADR 562 (851)
Q Consensus 528 ~~-g~~~~~~~~~~L~~~~~~~G-~~~eA~~ll~~~~ 562 (851)
.. .-..+.....-++..+.+.| .++.+..+++.+.
T Consensus 128 ~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~ 164 (177)
T 3e3v_A 128 NRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQELD 164 (177)
T ss_dssp HHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHCc
Confidence 21 11112233344555666666 4566666666653
No 350
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=41.56 E-value=2.6e+02 Score=27.30 Aligned_cols=153 Identities=11% Similarity=0.024 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHHcCC-----hHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038852 355 NSDTFNIMVNECFKHGK-----FSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPD 429 (851)
Q Consensus 355 ~~~~~~~L~~~~~~~g~-----~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 429 (851)
+..+....+.++.+.+. ...++..+..+.... +..+-...+.++...|+. ++...+.++.+. ++
T Consensus 104 ~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~-------~~~vR~~a~~aL~~~~~~-~~~~~L~~~l~d---~~ 172 (280)
T 1oyz_A 104 SACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDK-------STNVRRATAFAISVINDK-ATIPLLINLLKD---PN 172 (280)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCS-------CHHHHHHHHHHHHTC----CCHHHHHHHHTC---SS
T ss_pred CHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCC-------CHHHHHHHHHHHHhcCCH-HHHHHHHHHHcC---CC
Confidence 34444444555544431 345555555554321 555555666667766653 355555555543 45
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 038852 430 VTTFRTLIDAYLKVE-RIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVR 508 (851)
Q Consensus 430 ~~~~~~Ll~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~ 508 (851)
..+-...+.++...+ +...+...+.++++. .+...-...+.++...|+.+ ++..+.++.+. ++ .-...+.
T Consensus 173 ~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d---~~~~vR~~A~~aL~~~~~~~-~~~~L~~~l~d---~~--vr~~a~~ 243 (280)
T 1oyz_A 173 GDVRNWAAFAININKYDNSDIRDCFVEMLQD---KNEEVRIEAIIGLSYRKDKR-VLSVLCDELKK---NT--VYDDIIE 243 (280)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHTTC---SCHHHHHHHHHHHHHTTCGG-GHHHHHHHHTS---SS--CCHHHHH
T ss_pred HHHHHHHHHHHHhhccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHhCCHh-hHHHHHHHhcC---cc--HHHHHHH
Confidence 555445555555554 234555555555432 23333344556666777543 33333333332 12 1223445
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 038852 509 GLCNEGLFDMSKDIVDQMMK 528 (851)
Q Consensus 509 a~~~~g~~~~A~~~~~~m~~ 528 (851)
++.+.|. .+++..+.++++
T Consensus 244 aL~~i~~-~~~~~~L~~~l~ 262 (280)
T 1oyz_A 244 AAGELGD-KTLLPVLDTMLY 262 (280)
T ss_dssp HHHHHCC-GGGHHHHHHHHT
T ss_pred HHHhcCc-hhhhHHHHHHHh
Confidence 5555555 244455544443
No 351
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=41.45 E-value=26 Score=37.67 Aligned_cols=337 Identities=13% Similarity=0.088 Sum_probs=145.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHH
Q 038852 180 NLINTYCDEGKVDEGMNVFRRIIETAPVGPSSN--TYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGAD---SLVYNNLIS 254 (851)
Q Consensus 180 ~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~--~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~~~~~Li~ 254 (851)
+.+...+..|+++-+..+++. + ..++.. .....+...+..|+.+-+..+++. |...+ ... .+.+.
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~----g-~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~~~g-~t~L~ 85 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQR----G-ASPNVSNVKVETPLHMAARAGHTEVAKYLLQN----KAKVNAKAKDD-QTPLH 85 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHT----T-CCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH----TCCSSCCCTTS-CCHHH
T ss_pred CHHHHHHHCCCHHHHHHHHHc----C-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC----CCCCCCCCCCC-CCHHH
Confidence 345556677888765555543 2 222211 112344455667777655555543 33222 221 23445
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCccch--hhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCH
Q 038852 255 GFLNLGNLEKANELFDELKQRCLVYDG--VVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKK 332 (851)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~~~~~~~~d~--~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~ 332 (851)
..+..|+.+-+..+++. +..++. ......+...++.|+.+.+..+++.-..... .+..-++ .+...+..|+.
T Consensus 86 ~A~~~g~~~~v~~Ll~~----ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g~t-~L~~A~~~g~~ 159 (437)
T 1n11_A 86 CAARIGHTNMVKLLLEN----NANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQAC-MTKKGFT-PLHVAAKYGKV 159 (437)
T ss_dssp HHHHHTCHHHHHHHHHH----TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTSCC-HHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHhC----CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcC-CCCCCCC-HHHHHHHcCCH
Confidence 55566777655555443 332221 1112234445667777665555543211111 1111122 33444566776
Q ss_pred HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHH
Q 038852 333 EEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLE 412 (851)
Q Consensus 333 ~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~ 412 (851)
+- ++.+++.+..++....+. . ..+...+..|+.+-...+++.-.... ..+...++ .+...+..|+.+
T Consensus 160 ~~----v~~Ll~~g~~~~~~~~~g--~-t~L~~A~~~~~~~~v~~Ll~~g~~~~-----~~~~~g~t-~L~~A~~~~~~~ 226 (437)
T 1n11_A 160 RV----AELLLERDAHPNAAGKNG--L-TPLHVAVHHNNLDIVKLLLPRGGSPH-----SPAWNGYT-PLHIAAKQNQVE 226 (437)
T ss_dssp HH----HHHHHHTTCCTTCCCSSC--C-CHHHHHHHTTCHHHHHHHGGGTCCSC-----CCCTTCCC-HHHHHHHTTCHH
T ss_pred HH----HHHHHhCCCCCCCCCCCC--C-CHHHHHHHcCCHHHHHHHHhCCCCCC-----CcCCCCCC-HHHHHHHcCCHH
Confidence 54 444445555443221111 1 12333446677665544444321111 11211122 233345567765
Q ss_pred HHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccc---hhHHHHHHHHHHHcCCHHHHHHH
Q 038852 413 EAEKLLREISTKSLSPDVT--TFRTLIDAYLKVERIDDALELFNRMVESGLRVV---VSFGTKVFNELITKGKVAECAPI 487 (851)
Q Consensus 413 ~A~~l~~~m~~~g~~pd~~--~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~L~~~~~~~g~~~~A~~l 487 (851)
-+..++ +.|...+.. .-.+.+...+..|+.+-...++ +.+...+ ..-.+ .+...+..|+.+-+..+
T Consensus 227 ~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~L 297 (437)
T 1n11_A 227 VARSLL----QYGGSANAESVQGVTPLHLAAQEGHAEMVALLL----SKQANGNLGNKSGLT-PLHLVAQEGHVPVADVL 297 (437)
T ss_dssp HHHHHH----HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH----TTTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHH
T ss_pred HHHHHH----HcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH----hcCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHH
Confidence 554444 334333221 1112333445667765544443 3332221 11111 23344566776655544
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHh
Q 038852 488 LTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPAL--QDFVRETFGKAGRGEEIERVLNA 560 (851)
Q Consensus 488 l~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~L~~~~~~~G~~~eA~~ll~~ 560 (851)
++.-...+.. |..-.+ .+...+..|..+ +++.+++.|..++... -...+....+.|+.+-+.-+++.
T Consensus 298 l~~g~~~~~~-~~~g~t-~L~~A~~~g~~~----~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ 366 (437)
T 1n11_A 298 IKHGVMVDAT-TRMGYT-PLHVASHYGNIK----LVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN 366 (437)
T ss_dssp HHHTCCTTCC-CSSCCC-HHHHHHHSSCSH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HhCCccCCCC-CCCCCC-HHHHHHHcCcHH----HHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHC
Confidence 4432211111 111112 233344566665 3444555555443211 11234445567777766666654
No 352
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=41.36 E-value=83 Score=28.68 Aligned_cols=56 Identities=13% Similarity=0.158 Sum_probs=28.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH-H-----HHHcCChhHHHHHHHHHHH
Q 038852 112 QSLIRAGDLDAASYLARQAVFSRIRP--TVFTCNAIIA-A-----MYRAKRYDDAVALFKYFFD 167 (851)
Q Consensus 112 ~~l~~~g~~~~A~~l~~~~~~~~~~~--~~~~~~~li~-~-----~~~~g~~~~A~~l~~~~~~ 167 (851)
..++..|+|-+|-++++.+-.....+ +...|..||. + ..+.|+.+-|..+|.+.+.
T Consensus 40 i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 40 VRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444566666666666655444333 3344444444 1 1234555555555555543
No 353
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=40.93 E-value=2.7e+02 Score=27.27 Aligned_cols=56 Identities=9% Similarity=0.017 Sum_probs=26.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHH
Q 038852 288 MEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLK-HEKKEEAQALFEQML 343 (851)
Q Consensus 288 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~-~g~~~~A~~l~~~m~ 343 (851)
+...-..+++++..+..+.+.+.+...+..-.|.|..+|-. .|....+++++..+.
T Consensus 11 AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissie 67 (248)
T 3uzd_A 11 ARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIE 67 (248)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 33444555555555555555555555555444444444421 133344444444333
No 354
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=40.76 E-value=2.5e+02 Score=26.80 Aligned_cols=24 Identities=13% Similarity=0.322 Sum_probs=17.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHc
Q 038852 322 LLEVLLKHEKKEEAQALFEQMLDN 345 (851)
Q Consensus 322 Li~~~~~~g~~~~A~~l~~~m~~~ 345 (851)
.+..|.+.|.+++|.++|++....
T Consensus 120 AV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHhcchHHHHHHHHHHhcC
Confidence 455677888888888888887653
No 355
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=39.47 E-value=2.7e+02 Score=26.96 Aligned_cols=61 Identities=8% Similarity=0.106 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Q 038852 176 VSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVD-AGRIGEAVDLLRDM 237 (851)
Q Consensus 176 ~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~-~g~~~~A~~l~~~m 237 (851)
.....++......+++++..+.+.++.+.+ ...+..--|.|..+|-. .|....+++++..+
T Consensus 6 e~~v~~AklaeqaeRyddm~~~mk~v~~~~-~eLt~EERnLLsvayKnvig~rR~swRiissi 67 (234)
T 2br9_A 6 EDLVYQAKLAEQAERYDEMVESMKKVAGMD-VELTVEERNLLSVAYKNVIGARRASWRIISSI 67 (234)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHhccc-CCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344456666677788888888888877654 35676666666666653 34444555555444
No 356
>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein; 2.10A {Gossypium hirsutum} SCOP: a.65.1.1 PDB: 3brx_A 1ycn_A 2q4c_A 1dk5_A
Probab=39.39 E-value=87 Score=32.24 Aligned_cols=12 Identities=17% Similarity=0.268 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHh
Q 038852 263 EKANELFDELKQ 274 (851)
Q Consensus 263 ~~A~~~~~~~~~ 274 (851)
..|..+.+.|..
T Consensus 20 ~DA~~L~~A~kG 31 (321)
T 1n00_A 20 EDCEQLRKAFSG 31 (321)
T ss_dssp HHHHHHHHHTSS
T ss_pred HHHHHHHHHhCC
Confidence 345555544443
No 357
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=39.14 E-value=2.2e+02 Score=30.82 Aligned_cols=64 Identities=16% Similarity=0.280 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC--------CHHHH-HHHHHHHHHcCChHHHHHHHHHHHHh
Q 038852 140 FTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVP--------NIVSY-NNLINTYCDEGKVDEGMNVFRRIIET 204 (851)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~p--------d~~~~-~~Li~~~~~~g~~~~A~~l~~~~~~~ 204 (851)
...|.|...|.+.++..-+..+++.+-.. +..| ..++| ..+++.++..+++.+|.+.|..+.+.
T Consensus 177 ~l~n~L~kiYFkl~~~~lckni~k~i~~~-~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 177 YLVNKLNNIYFRIESPQLCSNIFKNFQPK-SMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHTHHHH-CCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccC-CCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 45677888899999999999998877433 2211 12333 45677778889999999988888776
No 358
>1axn_A Annexin III; annexin family, calcium/phospholipid-binding protein complex; 1.78A {Homo sapiens} SCOP: a.65.1.1 PDB: 1aii_A
Probab=38.67 E-value=3.4e+02 Score=27.75 Aligned_cols=42 Identities=5% Similarity=-0.096 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038852 483 ECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMM 527 (851)
Q Consensus 483 ~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~ 527 (851)
.|..+++.|.. ...|..++..++.. ...-++....+.|+++-
T Consensus 254 ~A~~L~~A~~g--~GTde~~lirilv~-Rs~~~L~~i~~~Y~~~y 295 (323)
T 1axn_A 254 LAERLHRALKG--IGTDEFTLNRIMVS-RSEIDLLDIRTEFKKHY 295 (323)
T ss_dssp HHHHHHHHHSS--SSCCHHHHHHHHHH-HTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHhccc--CCCCHHHhhhhhhh-CCHHHHHHHHHHHHHHc
Confidence 36667777743 34466666555432 23345566666666554
No 359
>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein; 2.10A {Gossypium hirsutum} SCOP: a.65.1.1 PDB: 3brx_A 1ycn_A 2q4c_A 1dk5_A
Probab=38.67 E-value=1.7e+02 Score=30.05 Aligned_cols=13 Identities=8% Similarity=-0.094 Sum_probs=6.1
Q ss_pred CChHHHHHHHHHH
Q 038852 514 GLFDMSKDIVDQM 526 (851)
Q Consensus 514 g~~~~A~~~~~~m 526 (851)
-+.....+.|.+.
T Consensus 279 ~dl~~Ik~~y~~~ 291 (321)
T 1n00_A 279 VDLKVIADEYQRR 291 (321)
T ss_dssp TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555443
No 360
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=37.17 E-value=2.2e+02 Score=30.82 Aligned_cols=111 Identities=12% Similarity=0.093 Sum_probs=60.7
Q ss_pred cCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 038852 152 AKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAV 231 (851)
Q Consensus 152 ~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~ 231 (851)
..+.+-|+++..+. ++.--...|..-.+.+...|+|++|.++.-...+. .-.+..|.+.+-.+=..-|...--+
T Consensus 342 l~n~~lA~~lA~R~----~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~g--iLRt~~Ti~rFk~vp~~pgq~splL 415 (494)
T 1bpo_A 342 LQNPDLALRMAVRN----NLAGAEELFARKFNALFAQGNYSEAAKVAANAPKG--ILRTPDTIRRFQSVPAQPGQTSPLL 415 (494)
T ss_dssp TCCHHHHHHHHHHT----TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGG--SSCSHHHHHHHTTSCCCTTSCCHHH
T ss_pred cCCHHHHHHHHHhc----CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccc--cccCHHHHHHHhcCCCCCCCCCHHH
Confidence 46666666665443 44444455666677788899999998887665432 2335555544433322334444556
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038852 232 DLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELF 269 (851)
Q Consensus 232 ~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~ 269 (851)
.+|..+++.|-- +..--.-+++.-...|+.+..++.+
T Consensus 416 ~YF~~Ll~~g~L-n~~ESlEl~r~vL~q~r~~llekWl 452 (494)
T 1bpo_A 416 QYFGILLDQGQL-NKYESLELCRPVLQQGRKQLLEKWL 452 (494)
T ss_dssp HHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhccCcc-chHHhhHHhHHHHhccHHHHHHHHH
Confidence 666666665432 4433333444444455544444333
No 361
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=36.85 E-value=3.2e+02 Score=26.95 Aligned_cols=39 Identities=15% Similarity=0.043 Sum_probs=18.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHH
Q 038852 288 MEWWFNQGKDKEAMQSYKSLMERN---FRMTPATCNTLLEVL 326 (851)
Q Consensus 288 i~~~~~~g~~~~A~~l~~~~~~~~---~~~~~~~~~~Li~~~ 326 (851)
+......+++++..+.++++.+.+ ...+..-.|.|..+|
T Consensus 35 AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAy 76 (260)
T 2npm_A 35 AKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAY 76 (260)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHH
Confidence 333444555555555555555544 444444444444443
No 362
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=36.68 E-value=1.8e+02 Score=27.52 Aligned_cols=26 Identities=4% Similarity=0.050 Sum_probs=14.4
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCC
Q 038852 324 EVLLKHEKKEEAQALFEQMLDNHQPP 349 (851)
Q Consensus 324 ~~~~~~g~~~~A~~l~~~m~~~~~~p 349 (851)
...+..|+.+....+++.+.+.+...
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 33455666666666666555544443
No 363
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=36.22 E-value=6.2e+02 Score=30.08 Aligned_cols=163 Identities=9% Similarity=0.033 Sum_probs=90.8
Q ss_pred HHHHHHHHHHcCC---hHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038852 359 FNIMVNECFKHGK---FSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFRT 435 (851)
Q Consensus 359 ~~~L~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~ 435 (851)
...++...|..|+ .++|.+.|+..........+.+|.... +...-.+.|..++-..+++.+.+. .+..--..
T Consensus 689 r~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~--vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ 763 (909)
T 4fke_A 689 EINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRST--IYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADK 763 (909)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHH--HHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHH--HHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHH
Confidence 3456666777776 457888888876654444555564332 233334567777777777777664 24444556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CccchhHHHHHHHHHHHcC-CHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHH
Q 038852 436 LIDAYLKVERIDDALELFNRMVESG-LRVVVSFGTKVFNELITKG-KVAECAPILTKMGE---KDPKPDFLIYDVVVRGL 510 (851)
Q Consensus 436 Ll~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~L~~~~~~~g-~~~~A~~ll~~m~~---~~~~pd~~~~~~ll~a~ 510 (851)
++.++....+.+...++++.++..+ ++... ... ++.++.... ..+.|.+.+.+=-+ .........+..++...
T Consensus 764 ll~aL~~~~d~~~l~~~L~~~l~~~~ir~qd-~~~-~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~ 841 (909)
T 4fke_A 764 LRSALACSNEVWLLNRYLGYTLNPDLIRKQD-ATS-TINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGV 841 (909)
T ss_dssp HHHHHTTCCCHHHHHHHHHHTTCTTTSCGGG-HHH-HHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHhCCCCCchhh-HHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 7777777888888888887776543 33322 222 333443332 23455555544211 11222233456677766
Q ss_pred HhcCChHHHHHHHHHHHH
Q 038852 511 CNEGLFDMSKDIVDQMMK 528 (851)
Q Consensus 511 ~~~g~~~~A~~~~~~m~~ 528 (851)
...-.-++-++-++...+
T Consensus 842 ~~~~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 842 TRRFSSEFELQQLEQFKK 859 (909)
T ss_dssp HTTCCSHHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHh
Confidence 655544555555555554
No 364
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=36.11 E-value=1.9e+02 Score=24.05 Aligned_cols=78 Identities=14% Similarity=0.144 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcC
Q 038852 330 EKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENE 409 (851)
Q Consensus 330 g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g 409 (851)
...++|..+-+.+...+. ...+-.+-+..+.+.|+|++|..+.+... .||.+.|..|. -.+.|
T Consensus 21 H~HqEA~tIAdwL~~~~~-------~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c--------~pdlepw~ALc--e~rlG 83 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE-------EEAVQLIRLSSLMNRGDYASALQQGNKLA--------YPDLEPWLALC--EYRLG 83 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHTTCHHHHHHHHTTSC--------CGGGHHHHHHH--HHHHT
T ss_pred hHHHHHHHHHHHHHhCCc-------HHHHHHHHHHHHHcchhHHHHHHhcCCCC--------CchHHHHHHHH--HHhcc
Confidence 345555555555544322 11122222334556677777766665442 33666664443 33556
Q ss_pred CHHHHHHHHHHHHhC
Q 038852 410 MLEEAEKLLREISTK 424 (851)
Q Consensus 410 ~~~~A~~l~~~m~~~ 424 (851)
..+++...+.++...
T Consensus 84 l~s~le~rL~~la~s 98 (116)
T 2p58_C 84 LGSALESRLNRLARS 98 (116)
T ss_dssp CHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHhC
Confidence 666666666555544
No 365
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent hexamerization switch E76, low calcium form; 1.93A {Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Probab=35.84 E-value=2.4e+02 Score=28.72 Aligned_cols=39 Identities=10% Similarity=0.046 Sum_probs=18.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 038852 519 SKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNA 560 (851)
Q Consensus 519 A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~ 560 (851)
|..+++.|.. ...+......++-. ...-++....+.|++
T Consensus 249 A~~L~~am~g--~Gtd~~~Liriiv~-rse~dl~~Ik~~y~~ 287 (315)
T 1dm5_A 249 AERLHHAMKG--LGTSDKTLIRILVS-RSEIDLANIKETFQA 287 (315)
T ss_dssp HHHHHHHHCT--TCCCHHHHHHHHHH-HTTTTHHHHHHHHHH
T ss_pred HHHHHHHhhc--CCCCHHHHhHHHHh-cCHHHHHHHHHHHHH
Confidence 5555555543 44455444433222 223356666666655
No 366
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=35.55 E-value=53 Score=31.30 Aligned_cols=15 Identities=7% Similarity=0.036 Sum_probs=8.0
Q ss_pred HHHcCChHHHHHHHH
Q 038852 185 YCDEGKVDEGMNVFR 199 (851)
Q Consensus 185 ~~~~g~~~~A~~l~~ 199 (851)
.+..|+++....+++
T Consensus 16 A~~~g~~~~~~~Ll~ 30 (240)
T 3eu9_A 16 ATQYGIYERCRELVE 30 (240)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCChHHHHHHHH
Confidence 455666655444443
No 367
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=35.21 E-value=2e+02 Score=31.65 Aligned_cols=75 Identities=11% Similarity=0.044 Sum_probs=45.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038852 181 LINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLN 258 (851)
Q Consensus 181 Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~ 258 (851)
|++...-...++.|...|.++....|. +...||.|+..+...|+.-+|+-.|-+.+.. ..|-..+..+|...+.+
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~--~G~~~nqLavla~~~~~~l~a~y~y~rsl~~-~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLVPS--NGQPYNQLAILASSKGDHLTTIFYYCRSIAV-KFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT--BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SBCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCC--CCchHHHHHHHHhcccccHHHHHHHHHHHhc-CCCChhHHHHHHHHHHH
Confidence 344444445566777777777776655 5567777777766677766666666666554 23455566666655543
No 368
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=34.46 E-value=58 Score=31.07 Aligned_cols=17 Identities=6% Similarity=-0.029 Sum_probs=10.1
Q ss_pred HHHHcCChHHHHHHHHH
Q 038852 365 ECFKHGKFSEAIETFKK 381 (851)
Q Consensus 365 ~~~~~g~~~~A~~~~~~ 381 (851)
..+..|+.+-+..+++.
T Consensus 43 ~A~~~g~~~~v~~Ll~~ 59 (232)
T 2rfa_A 43 IAALYDNLEAAMVLMEA 59 (232)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHc
Confidence 33456776666666655
No 369
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=34.26 E-value=3.6e+02 Score=27.41 Aligned_cols=16 Identities=0% Similarity=-0.126 Sum_probs=9.6
Q ss_pred HHHcCChHHHHHHHHH
Q 038852 366 CFKHGKFSEAIETFKK 381 (851)
Q Consensus 366 ~~~~g~~~~A~~~~~~ 381 (851)
.+..|+.+-+..+++.
T Consensus 180 A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 180 AMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhc
Confidence 3466776666666654
No 370
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=34.06 E-value=3.5e+02 Score=26.64 Aligned_cols=38 Identities=11% Similarity=-0.032 Sum_probs=17.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Q 038852 288 MEWWFNQGKDKEAMQSYKSLMERN--FRMTPATCNTLLEV 325 (851)
Q Consensus 288 i~~~~~~g~~~~A~~l~~~~~~~~--~~~~~~~~~~Li~~ 325 (851)
+......+++++..+.++++.+.+ ...+..-.|.|..+
T Consensus 15 AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSva 54 (260)
T 1o9d_A 15 AKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVA 54 (260)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHH
Confidence 333444455555555555555444 44444444433333
No 371
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.77 E-value=2e+02 Score=30.34 Aligned_cols=28 Identities=29% Similarity=0.527 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038852 247 LVYNNLISGFLNLGNLEKANELFDELKQ 274 (851)
Q Consensus 247 ~~~~~Li~~~~~~g~~~~A~~~~~~~~~ 274 (851)
.+...++..|...|+.++|+.+++++..
T Consensus 128 ~i~~~i~~~yl~~~d~~~a~~~l~~~~~ 155 (393)
T 4b4t_O 128 LIDSEIARTYLLKNDLVKARDLLDDLEK 155 (393)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4445566677777777777777776653
No 372
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=33.64 E-value=92 Score=31.79 Aligned_cols=78 Identities=12% Similarity=0.014 Sum_probs=38.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 038852 472 FNELITKGKVAECAPILTKMGEKDPKP---DFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQDFVRETFGKA 548 (851)
Q Consensus 472 ~~~~~~~g~~~~A~~ll~~m~~~~~~p---d~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~ 548 (851)
+...+..|..+.+..+++. .+... |..-.+.|.. .+..|..+ +.+.+++.|..++... .+....+.
T Consensus 243 L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~-A~~~g~~~----iv~~Ll~~GAd~n~~~---~L~~A~~~ 311 (337)
T 4g8k_A 243 LILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLL-AVELKLKK----IAELLCKRGASTDCGD---LVMTARRN 311 (337)
T ss_dssp HHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHH-HHHTTCHH----HHHHHHTTSCSSTTCC---HHHHHHHT
T ss_pred HHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHH-HHHcCCHH----HHHHHHHCCCCCCCCC---HHHHHHHc
Confidence 3455677777766655542 12221 1111222333 34556654 4455566776554332 23344566
Q ss_pred CCHHHHHHHHHh
Q 038852 549 GRGEEIERVLNA 560 (851)
Q Consensus 549 G~~~eA~~ll~~ 560 (851)
|+.+-+.-+++.
T Consensus 312 ~~~~iv~~Ll~~ 323 (337)
T 4g8k_A 312 YDHSLVKVLLSH 323 (337)
T ss_dssp TCHHHHHHHHHT
T ss_pred CCHHHHHHHHHC
Confidence 777666655554
No 373
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane binding, matrix vessicle, protein and metal binding protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A 1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A 1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A 1bcw_A 2ran_A ...
Probab=33.51 E-value=4e+02 Score=27.11 Aligned_cols=42 Identities=10% Similarity=-0.146 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038852 483 ECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMM 527 (851)
Q Consensus 483 ~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~ 527 (851)
.|..+++.|...| .|..++..++.. ...-+.....+.|+++-
T Consensus 250 ~A~~L~~a~~g~G--td~~~Lirilv~-Rse~dl~~Ik~~y~~~y 291 (320)
T 1yii_A 250 FAETLYYSMKGAG--TDDDTLIRVMVS-RSEIDLLDIRHEFRKNF 291 (320)
T ss_dssp HHHHHHHHHSSSS--CCHHHHHHHHHH-HTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCC--CcHHHHHHHHHh-cCHHHHHHHHHHHHHhc
Confidence 4555666665433 355544444332 22344555555555443
No 374
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=33.32 E-value=2.8e+02 Score=29.28 Aligned_cols=30 Identities=10% Similarity=0.186 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 429 DVTTFRTLIDAYLKVERIDDALELFNRMVE 458 (851)
Q Consensus 429 d~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~ 458 (851)
.+.-|..++..|++.+++.+|++.|.++.+
T Consensus 317 HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 317 HIYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 456677777777888888888887777654
No 375
>1w3w_A Annexin A8; coagulation, annexin family, calcium and phospholipid binding proteins; 1.99A {Homo sapiens} PDB: 1w45_A
Probab=32.90 E-value=3e+02 Score=28.20 Aligned_cols=78 Identities=15% Similarity=0.236 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCC--HHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHhCCCHHH
Q 038852 262 LEKANELFDELKQRCLVYDGVVNATFMEWWFNQGK--DKEAMQSYKSLMERNFRMTP-----ATCNTLLEVLLKHEKKEE 334 (851)
Q Consensus 262 ~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~--~~~A~~l~~~~~~~~~~~~~-----~~~~~Li~~~~~~g~~~~ 334 (851)
-..|..+.+.|...| .|. ..+++.++...+ .....+.|+.+...++..+. ..|..++.++...--..+
T Consensus 24 ~~DA~~L~kA~kG~G--tdE---~~lieIL~~Rs~~q~~~I~~aY~~~yg~~L~~dlkse~sG~f~~ll~~l~~~~~~~D 98 (327)
T 1w3w_A 24 DPDAETLYKAMKGIG--TNE---QAIIDVLTKRSNTQRQQIAKSFKAQFGKDLTETLKSELSGKFERLIVALMYPPYRYE 98 (327)
T ss_dssp HHHHHHHHHHHSSSS--CCH---HHHHHHHTTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCTTHHH
T ss_pred HHHHHHHHHHhcCCC--CCH---HHHHHHHhcCCHHHHHHHHHHHHHHHCcCHHHHHHHHcCCcHHHHHHHhcCCHHHHH
Confidence 356666666665443 343 334444444332 33444555555444332211 234555666555444556
Q ss_pred HHHHHHHHHH
Q 038852 335 AQALFEQMLD 344 (851)
Q Consensus 335 A~~l~~~m~~ 344 (851)
|..+++.+..
T Consensus 99 A~~L~~A~~g 108 (327)
T 1w3w_A 99 AKELHDAMKG 108 (327)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHhhc
Confidence 6666665553
No 376
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.75 E-value=2.4e+02 Score=29.78 Aligned_cols=96 Identities=10% Similarity=0.036 Sum_probs=61.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhccCCC------------CCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 038852 360 NIMVNECFKHGKFSEAIETFKKAGTHPK------------SKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTK--- 424 (851)
Q Consensus 360 ~~L~~~~~~~g~~~~A~~~~~~~~~~~~------------~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--- 424 (851)
..++.++....+.++|+++++++..... .............++..|...|+.++|..+++++...
T Consensus 80 ~~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~ 159 (393)
T 4b4t_O 80 KYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDK 159 (393)
T ss_dssp HTTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc
Confidence 3456677788899999999999843310 0011223455667778888999999999999887531
Q ss_pred --CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038852 425 --SLSPD--VTTFRTLIDAYLKVERIDDALELFNR 455 (851)
Q Consensus 425 --g~~pd--~~~~~~Ll~~~~~~g~~~~A~~~~~~ 455 (851)
++.+. ...|...+..|...+++..+...+-.
T Consensus 160 ~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~ 194 (393)
T 4b4t_O 160 KDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLL 194 (393)
T ss_dssp SCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 23322 23455566666667777665554433
No 377
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=32.16 E-value=4.5e+02 Score=27.25 Aligned_cols=28 Identities=18% Similarity=-0.049 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 038852 317 ATCNTLLEVLLKHEKKEEAQALFEQMLD 344 (851)
Q Consensus 317 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~ 344 (851)
.-|..++..+.+++++.+|++.+.++-.
T Consensus 297 YPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 297 YPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 5566677788888888888888877654
No 378
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=31.50 E-value=3.9e+02 Score=26.34 Aligned_cols=24 Identities=4% Similarity=0.166 Sum_probs=12.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHh
Q 038852 181 LINTYCDEGKVDEGMNVFRRIIET 204 (851)
Q Consensus 181 Li~~~~~~g~~~~A~~l~~~~~~~ 204 (851)
++......+++++..+.+.++.+.
T Consensus 14 ~AkLaeqaeRyddm~~~mk~v~~~ 37 (260)
T 1o9d_A 14 MAKLAEQAERYEEMVEFMEKVSNS 37 (260)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHcc
Confidence 344444455555555555555543
No 379
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=31.18 E-value=4.6e+02 Score=27.13 Aligned_cols=29 Identities=14% Similarity=0.284 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038852 118 GDLDAASYLARQAVFSRIRPTVFTCNAIIA 147 (851)
Q Consensus 118 g~~~~A~~l~~~~~~~~~~~~~~~~~~li~ 147 (851)
.+.+....+|+.-+... +||......++.
T Consensus 14 ~~i~~Vv~lF~~~L~~~-ePdLallSiv~G 42 (472)
T 3re2_A 14 KDIKSVVEVFRQELRND-QPNLAQLSIVLG 42 (472)
T ss_dssp CSHHHHHHHHHHHHTSS-SCCHHHHHHHHH
T ss_pred cchHHHHHHHHHHhcCC-CCCchHHHHHHH
Confidence 35667788888877744 888776655543
No 380
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=31.10 E-value=52 Score=30.52 Aligned_cols=83 Identities=14% Similarity=0.128 Sum_probs=34.9
Q ss_pred HHHHcCCHHHHHHHHHHH-hhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCC
Q 038852 474 ELITKGKVAECAPILTKM-GEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKYGVGITPALQ--DFVRETFGKAGR 550 (851)
Q Consensus 474 ~~~~~g~~~~A~~ll~~m-~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~g~~~~~~~~--~~L~~~~~~~G~ 550 (851)
..+..|+.+-+..+++.- ..... .|..-.+.|..++........-.++++.+++.|..++.... ...+....+.|+
T Consensus 112 ~A~~~~~~~~v~~Ll~~g~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~ 190 (201)
T 3hra_A 112 PAAEKGHIDNVKLLLEDGREDIDF-QNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGY 190 (201)
T ss_dssp HHHHTTCHHHHHHHHHHCCCCTTC-CCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHcCCCCcCC-CCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC
Confidence 344566666555555443 11111 12222233333333322233345666666666654432111 112333344455
Q ss_pred HHHHHHH
Q 038852 551 GEEIERV 557 (851)
Q Consensus 551 ~~eA~~l 557 (851)
.+-+.-+
T Consensus 191 ~~~~~~L 197 (201)
T 3hra_A 191 TEISKIL 197 (201)
T ss_dssp HHHHHHH
T ss_pred HhHHHHH
Confidence 5444433
No 381
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=30.93 E-value=1.5e+02 Score=27.39 Aligned_cols=30 Identities=10% Similarity=0.137 Sum_probs=18.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCC
Q 038852 322 LLEVLLKHEKKEEAQALFEQMLDNHQPPNI 351 (851)
Q Consensus 322 Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~ 351 (851)
.+...+..|+.+.-.++.+.+++.|..++.
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~ 70 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIKS 70 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCCC
Confidence 344445566666666677777777766543
No 382
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=30.84 E-value=7.9e+02 Score=29.72 Aligned_cols=77 Identities=10% Similarity=0.099 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhcC---CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHH
Q 038852 227 IGEAVDLLRDMLSRQ---LGADS-LVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQ 302 (851)
Q Consensus 227 ~~~A~~l~~~m~~~g---~~pd~-~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~ 302 (851)
.+.+.++++++.+.. +..|. ..+..|+.. .+.=+.++-.++++++... ......+++++...|-.+...-
T Consensus 287 ~~~~~e~lk~L~~~~~~~v~~~~~~~f~~Lv~~-lR~~~~e~L~~l~~~~~~~-----~~~r~~~lDal~~aGT~~a~~~ 360 (1056)
T 1lsh_A 287 ESEIHTVLKHLVENNQLSVHEDAPAKFLRLTAF-LRNVDAGVLQSIWHKLHQQ-----KDYRRWILDAVPAMATSEALLF 360 (1056)
T ss_dssp HHHHHHHHHHHHHHCSSSCCTTHHHHHHHHHHH-HTTSCHHHHHHHHHHHTTS-----HHHHHHHHHHHHHHCSHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCcchHHHHHHHHHH-HhcCCHHHHHHHHHHHhcc-----HHHHHHHHHHhHhcCCHHHHHH
Confidence 456677777776643 22333 234444443 4455667777777776532 2233446677777776654444
Q ss_pred HHHHHHH
Q 038852 303 SYKSLME 309 (851)
Q Consensus 303 l~~~~~~ 309 (851)
+.+.+..
T Consensus 361 i~~~i~~ 367 (1056)
T 1lsh_A 361 LKRTLAS 367 (1056)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 4444433
No 383
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=30.73 E-value=3.1e+02 Score=25.00 Aligned_cols=155 Identities=14% Similarity=0.083 Sum_probs=81.3
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHH
Q 038852 136 RPTVFTCNAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYR 215 (851)
Q Consensus 136 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~ 215 (851)
.+|..+-...+.++.+.++-+ ++..+.+++.. +|...-...+.++...|+. ++...+.+++. .++..+-.
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~-~~~~L~~~l~~----~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~----d~~~~vr~ 94 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDER-AVEPLIKALKD----EDAWVRRAAADALGQIGDE-RAVEPLIKALK----DEDGWVRQ 94 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC----SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT----CSSHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCChh-HHHHHHHHHcC----CCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc----CCCHHHHH
Confidence 345555555556666666533 33333334331 3555555556666666654 34444444443 23666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcC
Q 038852 216 HLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQG 295 (851)
Q Consensus 216 ~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g 295 (851)
..+.++.+.++. +++..+.+++. .+|..+-...+.++.+.++- ++...+..++.. .+..+....+.++.+.|
T Consensus 95 ~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 95 SAAVALGQIGDE-RAVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALKD---EDGWVRQSAADALGEIG 166 (201)
T ss_dssp HHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTTC---SSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHcC---CCHHHHHHHHHHHHHhC
Confidence 666677776654 34444444443 23666666667777766663 344444444432 35555666666666665
Q ss_pred CHHHHHHHHHHHHH
Q 038852 296 KDKEAMQSYKSLME 309 (851)
Q Consensus 296 ~~~~A~~l~~~~~~ 309 (851)
+ .+++..+..+++
T Consensus 167 ~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 167 G-ERVRAAMEKLAE 179 (201)
T ss_dssp S-HHHHHHHHHHHH
T ss_pred c-hhHHHHHHHHHh
Confidence 5 334555554443
No 384
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane binding, matrix vessicle, protein and metal binding protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A 1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A 1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A 1bcw_A 2ran_A ...
Probab=30.38 E-value=4.5e+02 Score=26.72 Aligned_cols=41 Identities=10% Similarity=-0.070 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 038852 517 DMSKDIVDQMMKYGVGITPALQDFVRETFGKAGRGEEIERVLNA 560 (851)
Q Consensus 517 ~~A~~~~~~m~~~g~~~~~~~~~~L~~~~~~~G~~~eA~~ll~~ 560 (851)
-.|..+++.|... ..+...+..++-. ...-++......|++
T Consensus 249 ~~A~~L~~a~~g~--Gtd~~~Lirilv~-Rse~dl~~Ik~~y~~ 289 (320)
T 1yii_A 249 YFAETLYYSMKGA--GTDDDTLIRVMVS-RSEIDLLDIRHEFRK 289 (320)
T ss_dssp HHHHHHHHHHSSS--SCCHHHHHHHHHH-HTTTTHHHHHHHHHH
T ss_pred HHHHHHHHhhccC--CCcHHHHHHHHHh-cCHHHHHHHHHHHHH
Confidence 3566666666543 3454433332211 223455555555554
No 385
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=30.25 E-value=7.5e+02 Score=29.27 Aligned_cols=95 Identities=12% Similarity=0.007 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHcCC---hHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 038852 358 TFNIMVNECFKHGK---FSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVTTFR 434 (851)
Q Consensus 358 ~~~~L~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~ 434 (851)
....++...|..|+ .++|.+.|++.........+.+|.... +-+.. .|.-++-..+++...+. .+..--.
T Consensus 682 lr~~~~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~~lr~~---vy~~~-~g~~~~~~~l~~~y~~~---~~~~ek~ 754 (897)
T 2xdt_A 682 LRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLA---VFAVG-AQSTEGWDFLYSKYQFS---LSSTEKS 754 (897)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCHHHHHH---HHHHH-TTSHHHHHHHHHHHTTC---CCHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcCCCCcchhhh---EEEEe-cCCHHHHHHHHHHHHcc---CCHHHHH
Confidence 34456666777776 567788888776543222444454322 11111 26666655566665543 2444556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Q 038852 435 TLIDAYLKVERIDDALELFNRMVES 459 (851)
Q Consensus 435 ~Ll~~~~~~g~~~~A~~~~~~m~~~ 459 (851)
.++.++....+.+...++++.+++.
T Consensus 755 ~ll~aL~c~~~~~~l~~~L~~~~~~ 779 (897)
T 2xdt_A 755 QIEFALCRTQNKEKLQWLLDESFKG 779 (897)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHC
T ss_pred HHHHHhccCCCHHHHHHHHHHHhCC
Confidence 7788888888988888888888864
No 386
>1hm6_A Annexin 1; phospholipid/Ca(2+)-binding protein, calcium-free form, FULL-length protein comprising protein core and N-terminal domain, metal; 1.80A {Sus scrofa} SCOP: a.65.1.1 PDB: 1mcx_A 1ain_A 1bo9_A
Probab=29.93 E-value=4.8e+02 Score=26.91 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 413 EAEKLLREISTKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVE 458 (851)
Q Consensus 413 ~A~~l~~~m~~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~ 458 (851)
.|..+++.|... -.|..++..++.. ...-++......|++...
T Consensus 278 ~A~~L~~A~~g~--GTde~~lirIlvs-Rs~~dL~~I~~~Y~~~yg 320 (346)
T 1hm6_A 278 FAEKLHQAMKGI--GTRHKTLIRIMVS-RSEIDMNDIKACYQKLYG 320 (346)
T ss_dssp HHHHHHHHHSSS--SCCHHHHHHHHHH-TTTTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCC--CCCHHHHhHHHhh-CCHHHHHHHHHHHHHHhC
Confidence 466677766643 3455554444322 122345555555555543
No 387
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=29.67 E-value=3.1e+02 Score=24.69 Aligned_cols=105 Identities=12% Similarity=0.138 Sum_probs=42.0
Q ss_pred HHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038852 450 LELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMKY 529 (851)
Q Consensus 450 ~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~ 529 (851)
..+++++.+.|.-++..+...++......|. ....+..++..+|+. ..+....+..+ .....+.|..++++-...
T Consensus 52 e~vl~~l~~~g~ldD~rfA~~~v~~~~~~~~--G~~~I~~eL~~KGI~--~~~I~~al~~~-~~de~e~a~~l~~Kk~~~ 126 (162)
T 3dfg_A 52 QAAVERLAGEGWQDDVRFAASVVRNRASSGY--GPLHIRAELGTHGLD--SDAVSAAMATF-EGDWTENALDLIRRRFGE 126 (162)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHHHHHHTTTC--CHHHHHHHHHHTTCC--HHHHHHHHTTC-CSCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHccc--cHHHHHHHHHHcCCC--HHHHHHHHHhC-cHhHHHHHHHHHHHhcCC
Confidence 3444444555544444444434443333222 223455555566553 22222222211 111223344444332111
Q ss_pred CCCCCHHHHHHHHHHHHhcCC-HHHHHHHHH
Q 038852 530 GVGITPALQDFVRETFGKAGR-GEEIERVLN 559 (851)
Q Consensus 530 g~~~~~~~~~~L~~~~~~~G~-~~eA~~ll~ 559 (851)
....+.....-++..+.+.|- ++.+..+++
T Consensus 127 ~~~~~~~~k~K~~~~L~rrGF~~~~I~~~l~ 157 (162)
T 3dfg_A 127 DGPVDLAQRRKAADLLARRGFDGNSIRLATR 157 (162)
T ss_dssp TCCCSHHHHHHHHHHHHHTTCCHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHh
Confidence 112334444456666666663 444444443
No 388
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=29.66 E-value=2e+02 Score=27.68 Aligned_cols=14 Identities=14% Similarity=0.067 Sum_probs=6.1
Q ss_pred HHHHHHHHHHhcCC
Q 038852 300 AMQSYKSLMERNFR 313 (851)
Q Consensus 300 A~~l~~~~~~~~~~ 313 (851)
+..+++.+.+.|.-
T Consensus 95 i~~vl~~L~~~g~l 108 (221)
T 3d5l_A 95 VEPILKKLRGQQLI 108 (221)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCC
Confidence 33444444444443
No 389
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=29.66 E-value=2.3e+02 Score=23.06 Aligned_cols=50 Identities=4% Similarity=-0.030 Sum_probs=26.8
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHH-----HHhCCCHHHHHHHHHHHHH
Q 038852 293 NQGKDKEAMQSYKSLMERNFRMTPATCNTLLEV-----LLKHEKKEEAQALFEQMLD 344 (851)
Q Consensus 293 ~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~-----~~~~g~~~~A~~l~~~m~~ 344 (851)
..|++-+|-++++++-.....+....|..||.. ..+.|+. |..++.+.+.
T Consensus 13 n~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 13 RAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 446666666666666555432223334444332 1245665 7777777655
No 390
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=29.56 E-value=4.1e+02 Score=25.97 Aligned_cols=60 Identities=8% Similarity=0.077 Sum_probs=35.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Q 038852 178 YNNLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFVD-AGRIGEAVDLLRDML 238 (851)
Q Consensus 178 ~~~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~-~g~~~~A~~l~~~m~ 238 (851)
+..+++..-..+++++..+..+++.+.+ ...+..--|.|..+|-. .|....+++++..+.
T Consensus 7 lv~~AklaeqaeRyddM~~~Mk~v~~~~-~eLt~EERnLLSvAYKNvig~rR~swRiissie 67 (248)
T 3uzd_A 7 LVQKARLAEQAERYDDMAAAMKNVTELN-EPLSNEERNLLSVAYKNVVGARRSSWRVISSIE 67 (248)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 3445566667777777777777776654 45566666666666543 344455555554443
No 391
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=29.27 E-value=98 Score=23.35 Aligned_cols=41 Identities=10% Similarity=0.292 Sum_probs=18.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038852 180 NLINTYCDEGKVDEGMNVFRRIIETAPVGPSSNTYRHLTKGFV 222 (851)
Q Consensus 180 ~Li~~~~~~g~~~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~ 222 (851)
-+++.+++..-.++++..++++++.+.+ +..+|..-++.++
T Consensus 7 Qll~l~Aed~AieDaiy~L~~aL~~g~I--~l~~ylK~vR~La 47 (65)
T 2f6m_A 7 QLYNLVAQDYALTDTIEALSRMLHRGTI--PLDTFVKQGRELA 47 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSS--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHH
Confidence 3344444444445555555555554433 4444444444333
No 392
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=29.22 E-value=1.4e+02 Score=32.92 Aligned_cols=79 Identities=11% Similarity=0.085 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHH
Q 038852 317 ATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVA 396 (851)
Q Consensus 317 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~ 396 (851)
.++..|++.......++.|..+|.++... .|+ +...|+.|+..+...|+.-+|+-+|-+..... .|-..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--~P~----~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~-----~Pf~~ 221 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQL--VPS----NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-----FPFPA 221 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT----BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-----BCCHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHh--CCC----CCchHHHHHHHHhcccccHHHHHHHHHHHhcC-----CCChh
Confidence 34455566666667777788888887774 343 77778888877777777777776666654321 12445
Q ss_pred HHHHHHHHHH
Q 038852 397 GYNNIIARYC 406 (851)
Q Consensus 397 ~~~~li~~~~ 406 (851)
+..+|...+.
T Consensus 222 a~~nL~~~f~ 231 (497)
T 1ya0_A 222 ASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 393
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=29.15 E-value=72 Score=30.45 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=7.1
Q ss_pred HhcCCHHHHHHHHHHH
Q 038852 257 LNLGNLEKANELFDEL 272 (851)
Q Consensus 257 ~~~g~~~~A~~~~~~~ 272 (851)
++.|+.+.+..+++.+
T Consensus 17 ~~~g~~~~v~~Ll~~~ 32 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLF 32 (241)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 3344444444444433
No 394
>3k8p_D Protein transport protein SEC39; intracellular trafficking, DSL1 complex, multisubunit tethering complex, snare proteins; 2.60A {Saccharomyces cerevisiae}
Probab=28.82 E-value=5.2e+02 Score=29.30 Aligned_cols=57 Identities=5% Similarity=0.085 Sum_probs=35.7
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----HHH-------cCChhHHHHHHHHH
Q 038852 106 NLHNRVQSLIRAGDLDAASYLARQAVFSRIRPTVFTCNAIIAA----MYR-------AKRYDDAVALFKYF 165 (851)
Q Consensus 106 ~l~~ll~~l~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~----~~~-------~g~~~~A~~l~~~~ 165 (851)
-....++.++..|+|+.|..++... +......++..++.+ |-. .|...+|.++++-+
T Consensus 402 ie~~iL~~LL~~g~FsLa~~ly~~~---~~~ve~~v~dvl~aaF~efyDNASNgNrtrG~mKkA~ecL~lf 469 (709)
T 3k8p_D 402 KLYSILEILLQMNEFAYIEAIIERF---DYSNNTQIYELLVKFFWHFFNNASNGLRKEPEMKKASQTLQII 469 (709)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHHHHHCSSCCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHhcc---chhhhHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHhc
Confidence 3456788899999999999998864 233334445555433 211 14556677776655
No 395
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=27.52 E-value=3.1e+02 Score=24.26 Aligned_cols=48 Identities=6% Similarity=0.085 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHhhC----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038852 480 KVAECAPILTKMGEK----DPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMMK 528 (851)
Q Consensus 480 ~~~~A~~ll~~m~~~----~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~~ 528 (851)
+++.+..+...++-. |.. .......-+..+++.|+++.+...+..+.+
T Consensus 71 D~~~l~~~aH~LKGssa~lGa~-~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ 122 (149)
T 1yvi_A 71 NFDKVDAYVHQLKGSSASVGAQ-KVKFTCMQFRQFCQDKSRDGCLMALAVVRN 122 (149)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHhHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555432 221 222333344555667777777777776654
No 396
>3qz3_A Ferritin; structural genomics, the center for structural genomics of I diseases, csgid, cytoplasmic, oxidoreductase; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: a.25.1.1
Probab=27.29 E-value=3.7e+02 Score=24.78 Aligned_cols=155 Identities=15% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 038852 263 EKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQM 342 (851)
Q Consensus 263 ~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m 342 (851)
++.++.+.+.+...+. ....|..+...|...|-..-|..+++...+. .+.|.++++.+
T Consensus 13 ~~v~~~LN~qin~EL~-as~~Yl~~a~~f~~~~l~g~a~~f~~~a~EE---------------------~~HA~~l~~~i 70 (184)
T 3qz3_A 13 QAMVEHLNEQINLEFF-SSNLYLQMSAWCEDKGFDGAAEFLRAHAVEE---------------------MQHMQRLFTYV 70 (184)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcChHHHHHHHHHHHHHH---------------------HHHHHHHHHHH
Q ss_pred HHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038852 343 LDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREIS 422 (851)
Q Consensus 343 ~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 422 (851)
...|..|....... -...++...+.|+.+...... -...++.++..+...+|+.-..-+- .++
T Consensus 71 ~~~Gg~~~l~~i~~-----------p~~~~~~~~e~le~aL~~Ek~-----v~~~l~~l~~la~~~~D~~t~~fLe-~fl 133 (184)
T 3qz3_A 71 SETGALPILGAIAA-----------PRHDFASLGEVFRETYQHEQK-----ITQQINKLAHVAFTSQDYSTFNFLQ-WYV 133 (184)
T ss_dssp HHTTCCCCCCCBCC-----------CCCCCSCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHH-HHH
T ss_pred HHCCCCcccCCCCC-----------cccCcCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHhHHHHHH-HHH
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038852 423 TKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMV 457 (851)
Q Consensus 423 ~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~ 457 (851)
+.-++ ....+..++.-+.+.|.-..++-+|++.+
T Consensus 134 ~EQve-~~~~l~~~l~~l~~~g~~~~~~~~~D~~l 167 (184)
T 3qz3_A 134 AEQHE-EEKLFKGILDKLELVGEDGKALFFIDKDL 167 (184)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHhCCCCcchhHHhHHH
No 397
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=27.09 E-value=1.2e+02 Score=27.67 Aligned_cols=69 Identities=10% Similarity=0.067 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCC
Q 038852 192 DEGMNVFRRIIETAPVGPSSNTYRHLTKGFVDAGRIGEAVDLLRDMLSR--QLGADSLVYNNLISGFLNLGN 261 (851)
Q Consensus 192 ~~A~~l~~~~~~~~~~~p~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~~~~~Li~~~~~~g~ 261 (851)
+++++.+++.++..+.+.+. --..++..+...+..-.|.++++.+.+. +...+..|...-++.+.+.|-
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 44444455554444444433 2233444444555555666666666655 444455444445555555553
No 398
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=26.79 E-value=3e+02 Score=27.05 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=14.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC
Q 038852 436 LIDAYLKVERIDDALELFNRMVESG 460 (851)
Q Consensus 436 Ll~~~~~~g~~~~A~~~~~~m~~~~ 460 (851)
.+...+..|+.+-+..+++.-.+.+
T Consensus 164 ~L~~A~~~g~~~~v~~Ll~~gad~n 188 (285)
T 3kea_A 164 CIHITIKNGHVDMMILLLDYMTSTN 188 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcChHHHHHHHHHcCCCCC
Confidence 3344456677766666666554433
No 399
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=26.24 E-value=1.8e+02 Score=25.88 Aligned_cols=11 Identities=9% Similarity=0.268 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 038852 263 EKANELFDELK 273 (851)
Q Consensus 263 ~~A~~~~~~~~ 273 (851)
-.|.++++.+.
T Consensus 43 ~sa~ei~~~l~ 53 (150)
T 2xig_A 43 LSPEEITHSIR 53 (150)
T ss_dssp BCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 33334444333
No 400
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=25.55 E-value=5.8e+02 Score=26.46 Aligned_cols=25 Identities=20% Similarity=0.468 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHH
Q 038852 177 SYNNLINTYCDEGKVDEGMNVFRRI 201 (851)
Q Consensus 177 ~~~~Li~~~~~~g~~~~A~~l~~~~ 201 (851)
....++.-|...||.++|...++++
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL 38 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREM 38 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 3456667777777777777777766
No 401
>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1 PDB: 1sq3_A 3kx9_A
Probab=25.53 E-value=3.8e+02 Score=24.34 Aligned_cols=18 Identities=11% Similarity=0.141 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHcCCCCC
Q 038852 333 EEAQALFEQMLDNHQPPN 350 (851)
Q Consensus 333 ~~A~~l~~~m~~~~~~p~ 350 (851)
+-|.++++.+...|..|.
T Consensus 54 ~HA~~l~~~i~~~gg~~~ 71 (173)
T 1s3q_A 54 MHAMKMFDFVSERGGRVK 71 (173)
T ss_dssp HHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHcCCCcc
Confidence 445555555555555543
No 402
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=25.30 E-value=1.6e+02 Score=27.08 Aligned_cols=89 Identities=18% Similarity=0.172 Sum_probs=45.1
Q ss_pred HHcCChHHHHHHHHHhccCCCCCCCccC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHH
Q 038852 367 FKHGKFSEAIETFKKAGTHPKSKPFAMD-VAGYNNIIARYCENEMLEEAEKLLREISTKSLSPDVT---TFRTLIDAYLK 442 (851)
Q Consensus 367 ~~~g~~~~A~~~~~~~~~~~~~~~~~~d-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~---~~~~Ll~~~~~ 442 (851)
++.|+++....+++.-.... + ..-+ +.+...+..|+.+.-.++++.+++.|..++.. -++.|..++..
T Consensus 14 a~~g~~~~~~~l~~~~~~~~-------~~~~g~-T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~ 85 (186)
T 3t8k_A 14 AMLGTYEDFLELFEKGYEDK-------ESVLKS-NILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQG 85 (186)
T ss_dssp HHHSCHHHHHHHHHHSSSCH-------HHHHTT-THHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHH
T ss_pred HHcCCHHHHHHHHhcCcccc-------cccCCC-CHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Confidence 46677777666665432110 1 1122 23334445666666666777777777665532 12223222222
Q ss_pred -cCCHHHHHHHHHHHHHcCCcc
Q 038852 443 -VERIDDALELFNRMVESGLRV 463 (851)
Q Consensus 443 -~g~~~~A~~~~~~m~~~~~~~ 463 (851)
..++....++.+.+++.|...
T Consensus 86 ~~~~~~~~~~iv~~Ll~~Gadi 107 (186)
T 3t8k_A 86 GGNDITGTTELCKIFLEKGADI 107 (186)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCS
T ss_pred CCcchhhHHHHHHHHHHCCCCC
Confidence 233444556666677666544
No 403
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=25.10 E-value=1.3e+02 Score=24.57 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=10.8
Q ss_pred HHHcCCHHHHHHHHHHHHHcC
Q 038852 114 LIRAGDLDAASYLARQAVFSR 134 (851)
Q Consensus 114 l~~~g~~~~A~~l~~~~~~~~ 134 (851)
+...|++-+|-++++.+-...
T Consensus 11 lfn~g~~~eaHEvlE~~W~~~ 31 (94)
T 2cwy_A 11 LWRAGRYYEVHEVLEPYWLKA 31 (94)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhCCChHHHHHHHHHHHhhC
Confidence 344455555555555554443
No 404
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=24.41 E-value=68 Score=30.64 Aligned_cols=221 Identities=9% Similarity=-0.025 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC
Q 038852 251 NLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHE 330 (851)
Q Consensus 251 ~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g 330 (851)
+.+...+..|+.+.+..+++. ..++..........+...+..|+.+-+..+++. ...+......-...+...+..|
T Consensus 13 t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~ 88 (237)
T 3b7b_A 13 SPLHAAAEAGHVDICHMLVQA--GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA--GALVDPKDAEGSTCLHLAAKKG 88 (237)
T ss_dssp CHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT--TCCCCCCCTTSCCHHHHHHHTT
T ss_pred CHHHHHHHcCcHHHHHHHHHc--CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhC--CCCCCCCCCCCCcHHHHHHHcC
Q ss_pred CHHHHHHHHHHHHHcC-CCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcC
Q 038852 331 KKEEAQALFEQMLDNH-QPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENE 409 (851)
Q Consensus 331 ~~~~A~~l~~~m~~~~-~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g 409 (851)
+ .++++.+++.+ ...+. ....-...+...+..|+.+-...+++.-...... +....+.|..+.....
T Consensus 89 ~----~~~~~~Ll~~~~~~~~~---~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-----~~~g~t~L~~A~~~~~ 156 (237)
T 3b7b_A 89 H----YEVVQYLLSNGQMDVNC---QDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIR-----DNEENICLHWAAFSGC 156 (237)
T ss_dssp C----HHHHHHHHTTTCCCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-----CTTSCCHHHHHHHHCC
T ss_pred C----HHHHHHHHhCCCCCccc---CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcc-----CCCCCCHHHHHHHCCC
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHH
Q 038852 410 MLEEAEKLLREISTKSLSPDVTTFR--TLIDAYLKVERIDDALELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPI 487 (851)
Q Consensus 410 ~~~~A~~l~~~m~~~g~~pd~~~~~--~Ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~l 487 (851)
.++++.+++.|..++..... +.+...++.|+.+-+..+++. ..++..........+...+..|+.+.++++
T Consensus 157 -----~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--gad~~~~d~~g~t~l~~A~~~~~~~~~~~l 229 (237)
T 3b7b_A 157 -----VDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR--DSDVTLKNKEGETPLQCASLNSQVWSALQM 229 (237)
T ss_dssp -----HHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT--TCCTTCCCTTSCCHHHHSCTTCHHHHHHHH
T ss_pred -----HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHc--CCCCCccCCCCCCHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhC
Q 038852 488 LTKMGEK 494 (851)
Q Consensus 488 l~~m~~~ 494 (851)
.+.+.+.
T Consensus 230 ~~~l~ds 236 (237)
T 3b7b_A 230 SKALQDS 236 (237)
T ss_dssp HHHHHHC
T ss_pred HHHhhcc
No 405
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=24.18 E-value=4.2e+02 Score=24.27 Aligned_cols=51 Identities=8% Similarity=0.110 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc
Q 038852 227 IGEAVDLLRDMLSRQLGADSLVYNNLISGFLNLGNLEKANELFDELKQRCLV 278 (851)
Q Consensus 227 ~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~ 278 (851)
.+.+..+++.+.+.|.--|...-..++....+.|.+. ...+-.++..+|+.
T Consensus 49 ~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~KGI~ 99 (177)
T 3e3v_A 49 EDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKKGID 99 (177)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHcCCC
Confidence 3444455555555555433333334444444333222 13333444444443
No 406
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=23.81 E-value=9.5e+02 Score=28.35 Aligned_cols=27 Identities=0% Similarity=-0.152 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 283 VNATFMEWWFNQGKDKEAMQSYKSLME 309 (851)
Q Consensus 283 ~~~~li~~~~~~g~~~~A~~l~~~~~~ 309 (851)
-...++.++....+.+...++++.++.
T Consensus 752 ek~~ll~aL~c~~~~~~l~~~L~~~~~ 778 (897)
T 2xdt_A 752 EKSQIEFALCRTQNKEKLQWLLDESFK 778 (897)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHhC
Confidence 334455555555666666666666554
No 407
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=23.72 E-value=9.9e+02 Score=28.51 Aligned_cols=92 Identities=12% Similarity=0.066 Sum_probs=41.3
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhhHHHHHH
Q 038852 215 RHLTKGFVDAGR---IGEAVDLLRDMLSRQLG--ADSLVYNNLISGFLNLGNLEKANELFDELKQRCLVYDGVVNATFME 289 (851)
Q Consensus 215 ~~Li~~~~~~g~---~~~A~~l~~~m~~~g~~--pd~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~li~ 289 (851)
..++...|..|+ .++|.+.|++.++.+.. .....-. .+.+.. .++.++-..++++..+.. +..-...++.
T Consensus 752 ~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~-~Vyc~~-~~~~~~~~~l~~~y~~s~---~~~ek~~ll~ 826 (967)
T 3se6_A 752 SALLKLACDLNHAPCIQKAAELFSQWMESSGKLNIPTDVLK-IVYSVG-AQTTAGWNYLLEQYELSM---SSAEQNKILY 826 (967)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCHHHHH-HHHHHH-TTSHHHHHHHHHHHHHCS---CHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccCChhhhh-HhHhhh-hccHHHHHHHHHHHhccC---CHHHHHHHHH
Confidence 344445555554 45666677666553221 1222111 111111 222222233333333321 2333455566
Q ss_pred HHHHcCCHHHHHHHHHHHHHhc
Q 038852 290 WWFNQGKDKEAMQSYKSLMERN 311 (851)
Q Consensus 290 ~~~~~g~~~~A~~l~~~~~~~~ 311 (851)
++....+.+...++++.++..+
T Consensus 827 aL~ct~d~~ll~~~L~~~l~~~ 848 (967)
T 3se6_A 827 ALSTSKHQEKLLKLIELGMEGK 848 (967)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCS
T ss_pred HhcCCCCHHHHHHHHHHHhCcC
Confidence 6666666666666666666543
No 408
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=23.66 E-value=5.9e+02 Score=25.86 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=10.9
Q ss_pred CCHHHHHHHHHHHHhcCCc
Q 038852 260 GNLEKANELFDELKQRCLV 278 (851)
Q Consensus 260 g~~~~A~~~~~~~~~~~~~ 278 (851)
++.+++.++++++...+..
T Consensus 259 ~~~~~~~~~~~~l~~~g~~ 277 (373)
T 1jr3_A 259 ANGERVMALINEAAARGIE 277 (373)
T ss_dssp TCHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHhCcC
Confidence 4556666666666555543
No 409
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=23.16 E-value=1.6e+02 Score=29.41 Aligned_cols=193 Identities=12% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCCHHHHHHH-------------HHHHHHcCChHHHHHHHHHHHHhCCCCC
Q 038852 143 NAIIAAMYRAKRYDDAVALFKYFFDQADIVPNIVSYNNL-------------INTYCDEGKVDEGMNVFRRIIETAPVGP 209 (851)
Q Consensus 143 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~~pd~~~~~~L-------------i~~~~~~g~~~~A~~l~~~~~~~~~~~p 209 (851)
|.|++.+...|+++.|.++|+++ ....+.--..-|... +.-|..-..+-+|.+.|.+........|
T Consensus 38 n~l~R~FL~~gkl~AAr~l~~rl-p~~~i~~~~~~~~~~~~~~~~~~~~~~ai~E~~~~~~~l~a~~~~~~W~~~~~~~p 116 (270)
T 3cqc_A 38 NAIMRKFLASKKHEAAKEVFVKI-PQDSIAEIYNQCEEQGMESPLPAEDDNAIREHLCIRAYLEAHETFNEWFKHMNSVP 116 (270)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHS-CTTHHHHHC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHC-ChHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q ss_pred CHHH------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--------------hcCCHHHHHHHH
Q 038852 210 SSNT------YRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFL--------------NLGNLEKANELF 269 (851)
Q Consensus 210 ~~~~------~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~--------------~~g~~~~A~~~~ 269 (851)
.... |...+....+.+.+..-+..++..+.. -...-...+...+ ..++ +.=..-+
T Consensus 117 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~W~~~l~~----~~~~a~~~l~~vL~f~~~gWL~~~~~d~~~~-~~r~~ql 191 (270)
T 3cqc_A 117 QKPALIPQPTFTEKVAHEHKEKKYEMDFGIWKGHLDA----LTADVKEKMYNVLLFVDGGWMVDVREDAKED-HERTHQM 191 (270)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHTCTTTCTTCCSCCCSCCC-HHHHHHH
T ss_pred CCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCCCcCCCCccccccc-hhHHHHH
Q ss_pred HHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 038852 270 DELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPP 349 (851)
Q Consensus 270 ~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p 349 (851)
+.+....+. .+...+..++...|++.+++++-..+.+... ..|..+... ....-.+...+.-..+++.|..|
T Consensus 192 ~~iR~~yIP---elvl~Lh~vl~~a~~~~~~~~LA~~VA~e~~----~ly~~F~k~-rL~Ell~~ia~sSl~ll~~~~dp 263 (270)
T 3cqc_A 192 VLLRKLCLP---MLCFLLHTILHSTGQYQECLQLADMVSSERH----KLYLVFSKE-ELRKLLQKLRESSLMLLDQGLDP 263 (270)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHTTCHHHHHTHHHHHHCTTT----CGGGGSCHH-HHHHHHHHHHHHHHHHHTTTBCT
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcccc----cHHHHhhHH-HHHHHHHHHHHHHHHHHhCCCCC
No 410
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=22.84 E-value=5.6e+02 Score=25.27 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=10.4
Q ss_pred CCHHHHHHHHHHHHh-cCC
Q 038852 225 GRIGEAVDLLRDMLS-RQL 242 (851)
Q Consensus 225 g~~~~A~~l~~~m~~-~g~ 242 (851)
+++++|++++.+++. .|.
T Consensus 241 ~~~~~a~~~l~~l~~~~g~ 259 (319)
T 2chq_A 241 GNFMEARELLDRLMVEYGM 259 (319)
T ss_dssp TCHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHHHcCC
Confidence 556666666666554 443
No 411
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=22.69 E-value=84 Score=28.94 Aligned_cols=12 Identities=8% Similarity=0.061 Sum_probs=5.4
Q ss_pred HcCChHHHHHHH
Q 038852 368 KHGKFSEAIETF 379 (851)
Q Consensus 368 ~~g~~~~A~~~~ 379 (851)
..|+.+-+..++
T Consensus 81 ~~~~~~~~~~Ll 92 (201)
T 3hra_A 81 AQGRTEILAYML 92 (201)
T ss_dssp HTTCHHHHHHHH
T ss_pred HcCCHHHHHHHH
Confidence 444544444444
No 412
>1w3w_A Annexin A8; coagulation, annexin family, calcium and phospholipid binding proteins; 1.99A {Homo sapiens} PDB: 1w45_A
Probab=22.61 E-value=6.2e+02 Score=25.75 Aligned_cols=42 Identities=10% Similarity=-0.115 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038852 483 ECAPILTKMGEKDPKPDFLIYDVVVRGLCNEGLFDMSKDIVDQMM 527 (851)
Q Consensus 483 ~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~~g~~~~A~~~~~~m~ 527 (851)
-|..+++.|...| .|..++..++.. ...-+.....+.|.++-
T Consensus 258 fA~~L~~amkg~G--Tdd~~Liriivs-R~e~dl~~Ik~~y~~~y 299 (327)
T 1w3w_A 258 FAERLYYAMKGAG--TRDGTLIRNIVS-RSEIDLNLIKCHFKKMY 299 (327)
T ss_dssp HHHHHHHHHSSSS--CCHHHHHHHHHH-HTTTTHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCC--CChhHeeeeeeE-CCHHHHHHHHHHHHHHh
Confidence 3555666665443 355554444332 23355666666666554
No 413
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=22.33 E-value=2.4e+02 Score=22.80 Aligned_cols=16 Identities=0% Similarity=-0.103 Sum_probs=8.4
Q ss_pred HcCCHHHHHHHHHHHh
Q 038852 477 TKGKVAECAPILTKMG 492 (851)
Q Consensus 477 ~~g~~~~A~~ll~~m~ 492 (851)
..|++++|+.+|...+
T Consensus 27 ~~g~y~eAl~~Y~~Ai 42 (93)
T 1wfd_A 27 AESRYQQALVCYQEGI 42 (93)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHH
Confidence 3455555555555444
No 414
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.29 E-value=2.1e+02 Score=25.25 Aligned_cols=40 Identities=13% Similarity=0.033 Sum_probs=15.8
Q ss_pred HHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 038852 473 NELITKGKVAECAPILTKMGEKDPKPDFLIYDVVVRGLCN 512 (851)
Q Consensus 473 ~~~~~~g~~~~A~~ll~~m~~~~~~pd~~~~~~ll~a~~~ 512 (851)
..+...+..-.|.++++.+.+.+...+..|....++.+..
T Consensus 29 ~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 68 (145)
T 2fe3_A 29 EYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRE 68 (145)
T ss_dssp HHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHH
Confidence 3333333333444444444444333333333333333333
No 415
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=22.23 E-value=2.4e+02 Score=25.02 Aligned_cols=46 Identities=9% Similarity=0.112 Sum_probs=25.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHHcCCh
Q 038852 322 LLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDTFNIMVNECFKHGKF 372 (851)
Q Consensus 322 Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~ 372 (851)
++..+...+..-.|.++++.+.+.+... +..|.+..+..+...|-+
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~~~~i-----s~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQKDKNT-----SISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHHSTTC-----CHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCC-----CHhhHHHHHHHHHHCCcE
Confidence 4444444445555666666665543322 455555566666666654
No 416
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.19 E-value=2.1e+02 Score=25.24 Aligned_cols=16 Identities=13% Similarity=0.345 Sum_probs=6.8
Q ss_pred CCHHHHHHHHHHHHhc
Q 038852 260 GNLEKANELFDELKQR 275 (851)
Q Consensus 260 g~~~~A~~~~~~~~~~ 275 (851)
+..-.|.++++.+.+.
T Consensus 35 ~~~~sa~ei~~~l~~~ 50 (145)
T 2fe3_A 35 MAHPTADDIYKALEGK 50 (145)
T ss_dssp SSCCCHHHHHHHHGGG
T ss_pred CCCCCHHHHHHHHHHh
Confidence 3333444444444443
No 417
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=22.13 E-value=6.5e+02 Score=26.66 Aligned_cols=30 Identities=10% Similarity=0.186 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038852 429 DVTTFRTLIDAYLKVERIDDALELFNRMVE 458 (851)
Q Consensus 429 d~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~ 458 (851)
...-|..++..+.+.+++.+|++.|.++..
T Consensus 302 hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 302 HIYPYMYLAGYHCRNRNVREALQAWADTAT 331 (489)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccceeecchHHHHhhhHHHHHHHhhhhhh
Confidence 355677777777777888888777777654
No 418
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=21.96 E-value=1.3e+02 Score=22.75 Aligned_cols=46 Identities=11% Similarity=0.028 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038852 213 TYRHLTKGFVDAGRIGEAVDLLRDMLSRQLGADSLVYNNLISGFLNL 259 (851)
Q Consensus 213 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~ 259 (851)
.++-+++++++..-+++++..++++++.|.- +..+|..-++.+++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g~I-~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRGTI-PLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH
Confidence 3556677777777788888888888888755 777776666655543
No 419
>2cih_A Ferritin heavy chain; apoferritin, ferroxidase, DI-iron non-heme protein, iron storage, iron, metal-binding, oxidoreductase, phosphorylation; 1.5A {Homo sapiens} PDB: 2chi_A 2cei_A 1fha_A 2fha_A 2cn7_A 2iu2_A 2clu_A 2cn6_A 3ajo_A 3ajq_A 3ajp_A 3erz_A 3es3_A 2z6m_A 1r03_A
Probab=21.77 E-value=73 Score=29.73 Aligned_cols=13 Identities=23% Similarity=0.107 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHhc
Q 038852 299 EAMQSYKSLMERN 311 (851)
Q Consensus 299 ~A~~l~~~~~~~~ 311 (851)
.|.++++.+..+|
T Consensus 66 HA~kl~~~i~~rg 78 (183)
T 2cih_A 66 HAEKLMKLQNQRG 78 (183)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCC
Confidence 3444444444433
No 420
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=21.64 E-value=1.6e+02 Score=26.76 Aligned_cols=57 Identities=12% Similarity=0.117 Sum_probs=28.9
Q ss_pred hcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCCCccCHHHHHHHHHHHHHcCCh
Q 038852 310 RNFRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDN--HQPPNIQAVNSDTFNIMVNECFKHGKF 372 (851)
Q Consensus 310 ~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~--~~~p~~~~~~~~~~~~L~~~~~~~g~~ 372 (851)
.|.+.+.. -..++..+...++.-.|.++++.+.+. +... +..|....+..+...|-+
T Consensus 27 ~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~i-----s~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 27 GGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNV-----GIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCC-----CHHHHHHHHHHHHHTTSE
T ss_pred cCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCC-----CHHHHHHHHHHHHHCCCE
Confidence 44444432 233455555555555566666666554 3222 455555555566666643
No 421
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=21.44 E-value=1.7e+02 Score=27.51 Aligned_cols=15 Identities=20% Similarity=0.237 Sum_probs=6.7
Q ss_pred HHhcCCHHHHHHHHH
Q 038852 256 FLNLGNLEKANELFD 270 (851)
Q Consensus 256 ~~~~g~~~~A~~~~~ 270 (851)
.++.|+++....+++
T Consensus 13 A~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 13 LAYSGKLDELKERIL 27 (231)
T ss_dssp HHHHTCHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHH
Confidence 334445444444443
No 422
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=21.35 E-value=2.1e+02 Score=29.39 Aligned_cols=16 Identities=6% Similarity=0.289 Sum_probs=7.9
Q ss_pred HHHhCCCHHHHHHHHH
Q 038852 325 VLLKHEKKEEAQALFE 340 (851)
Q Consensus 325 ~~~~~g~~~~A~~l~~ 340 (851)
..+..|+.+-+..+++
T Consensus 179 ~A~~~g~~~~v~~Ll~ 194 (364)
T 3ljn_A 179 RAMEFRNREALDLMMD 194 (364)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHh
Confidence 3345666654444443
No 423
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=21.11 E-value=29 Score=34.08 Aligned_cols=192 Identities=10% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCccchhh------HHHHHHHHH---HcCCHHHHHHHHHHH---------HHhc
Q 038852 250 NNLISGFLNLGNLEKANELFDELKQRCLVYDGVV------NATFMEWWF---NQGKDKEAMQSYKSL---------MERN 311 (851)
Q Consensus 250 ~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~------~~~li~~~~---~~g~~~~A~~l~~~~---------~~~~ 311 (851)
...+...++.|+.+....+++.+.+.+...+... -...+...+ +.|+.+-+..+++.. ....
T Consensus 6 ~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~ 85 (260)
T 3jxi_A 6 RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSP 85 (260)
T ss_dssp HHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccc
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCCccCHHH----------------HHHHHHHHHHcCChHHH
Q 038852 312 FRMTPATCNTLLEVLLKHEKKEEAQALFEQMLDNHQPPNIQAVNSDT----------------FNIMVNECFKHGKFSEA 375 (851)
Q Consensus 312 ~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~~~----------------~~~L~~~~~~~g~~~~A 375 (851)
+......-.+.+...+..|+.+ +++.+++.|..+ +... -...+...+..|+.+-+
T Consensus 86 ~~~~d~~g~t~L~~A~~~g~~~----~v~~Ll~~ga~~-----~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v 156 (260)
T 3jxi_A 86 FRDVYYRGQTALHIAIERRCKH----YVELLVEKGADV-----HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIV 156 (260)
T ss_dssp BCCSSEESBCHHHHHHHTTCHH----HHHHHHHTTCCT-----TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHH
T ss_pred ccccccCCCCHHHHHHHcCCHH----HHHHHHhCCCCc-----CccccccccCcccccccccCCCCHHHHHHHcCCHHHH
Q ss_pred HHHHH---HhccCCCCCCCccCHHHHHHHHHHHHhcCC----HHHHHHHHHHHHhCCCCC---------CHHHHHHHHHH
Q 038852 376 IETFK---KAGTHPKSKPFAMDVAGYNNIIARYCENEM----LEEAEKLLREISTKSLSP---------DVTTFRTLIDA 439 (851)
Q Consensus 376 ~~~~~---~~~~~~~~~~~~~d~~~~~~li~~~~~~g~----~~~A~~l~~~m~~~g~~p---------d~~~~~~Ll~~ 439 (851)
..+++ .-...... |...++.|..++..... .+...++++.+++.|..+ ....-.+-+..
T Consensus 157 ~~Ll~~~~~ga~~~~~-----d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~ 231 (260)
T 3jxi_A 157 HYLTENGHKQADLRRQ-----DSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMM 231 (260)
T ss_dssp HHHHHCSSCCCCTTCC-----CTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHH
T ss_pred HHHHhccccCCCCccc-----CCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHH
Q ss_pred HHHcCCHHHHHHHHHH
Q 038852 440 YLKVERIDDALELFNR 455 (851)
Q Consensus 440 ~~~~g~~~~A~~~~~~ 455 (851)
.++.|+.+-+..++++
T Consensus 232 A~~~g~~~~v~~Ll~~ 247 (260)
T 3jxi_A 232 AAKTGKIGIFQHIIRR 247 (260)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHh
No 424
>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli} SCOP: a.25.1.1
Probab=20.73 E-value=4.6e+02 Score=23.48 Aligned_cols=158 Identities=16% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCccchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 038852 263 EKANELFDELKQRCLVYDGVVNATFMEWWFNQGKDKEAMQSYKSLMERNFRMTPATCNTLLEVLLKHEKKEEAQALFEQM 342 (851)
Q Consensus 263 ~~A~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~Li~~~~~~g~~~~A~~l~~~m 342 (851)
++.++.+.+.+..... ....|..+...+.+.|...-|..+...+.+. .+-|.++++.+
T Consensus 4 ~~~~~~LN~~i~~El~-A~~~Yl~~a~~~~~~gl~~~a~~f~~~a~eE---------------------~~HA~~l~~~i 61 (165)
T 1eum_A 4 PEMIEKLNEQMNLELY-SSLLYQQMSAWCSYHTFEGAAAFLRRHAQEE---------------------MTHMQRLFDYL 61 (165)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCcHHHHHHHHHHHHHH---------------------HHHHHHHHHHH
Q ss_pred HHcCCCCCCCccCHHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038852 343 LDNHQPPNIQAVNSDTFNIMVNECFKHGKFSEAIETFKKAGTHPKSKPFAMDVAGYNNIIARYCENEMLEEAEKLLREIS 422 (851)
Q Consensus 343 ~~~~~~p~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 422 (851)
...|..|.+..... -...++...+.|+.+...... -...|+.++..+...+|+.-+.-+- .++
T Consensus 62 ~~~gg~~~l~~i~~-----------p~~~~~~~~e~l~~al~~E~~-----~~~~~~~l~~~a~~~~D~~~~~fl~-~~l 124 (165)
T 1eum_A 62 TDTGNLPRINTVES-----------PFAEYSSLDELFQETYKHEQL-----ITQKINELAHAAMTNQDYPTFNFLQ-WYV 124 (165)
T ss_dssp HHTTCCCCCCCBCC-----------CCCCCSCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHH-HHH
T ss_pred HHcCCCcccCCCCC-----------CCCCCCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHcCChhHHHHHH-HHH
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 038852 423 TKSLSPDVTTFRTLIDAYLKVERIDDALELFNRMVESG 460 (851)
Q Consensus 423 ~~g~~pd~~~~~~Ll~~~~~~g~~~~A~~~~~~m~~~~ 460 (851)
+.-+. .......++..+.+.|.-..++-+|++-+...
T Consensus 125 ~eq~e-~~~~l~~~l~~l~~~g~~~~g~~~~D~~l~~~ 161 (165)
T 1eum_A 125 SEQHE-EEKLFKSIIDKLSLAGKSGEGLYFIDKELSTL 161 (165)
T ss_dssp HHHHH-HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHC
T ss_pred HHHHH-HHHHHHHHHHHHHHcCCCccchhHHhHHHHhh
No 425
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=20.70 E-value=2.6e+02 Score=27.08 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 038852 431 TTFRTLIDAYLKVERIDDALELFNR 455 (851)
Q Consensus 431 ~~~~~Ll~~~~~~g~~~~A~~~~~~ 455 (851)
.++.-++.++.+...+-+++..|+.
T Consensus 230 Is~~Ef~~~~~~~~~l~~~l~~~d~ 254 (256)
T 2jul_A 230 VTIDEFLETCQKDENIMNSMQLFEN 254 (256)
T ss_dssp BCHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred EeHHHHHHHHHhCHHHHHHHHhhcc
Confidence 3455555555555555555555544
No 426
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=20.69 E-value=2.2e+02 Score=20.33 Aligned_cols=38 Identities=11% Similarity=0.216 Sum_probs=22.4
Q ss_pred HHHHHHHHHcCCccchhHHHHHHHHHHHcCCHHHHHHHHH
Q 038852 450 LELFNRMVESGLRVVVSFGTKVFNELITKGKVAECAPILT 489 (851)
Q Consensus 450 ~~~~~~m~~~~~~~~~~~~~~L~~~~~~~g~~~~A~~ll~ 489 (851)
.+.+..|...|+.....|.+.|+. .+.|++..|++++.
T Consensus 11 ~~al~qMl~MGF~negGWLt~LL~--~k~gDI~~aLD~lq 48 (52)
T 1q02_A 11 IESLSQMLSMGFSDEGGWLTRLLQ--TKNYDIGAALDTIQ 48 (52)
T ss_dssp HHHHHHHHTTTCCCTTSHHHHHHH--HTTTCHHHHHHHHT
T ss_pred HHHHHHHHHcCCCccccHHHHHHH--HccCCHHHHHHHhh
Confidence 344556666676666666554433 45667777666553
No 427
>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A {Pseudo-nitzschia multiseries} SCOP: a.25.1.1 PDB: 3e6r_A
Probab=20.61 E-value=86 Score=28.79 Aligned_cols=18 Identities=6% Similarity=0.047 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhCCCCC
Q 038852 411 LEEAEKLLREISTKSLSP 428 (851)
Q Consensus 411 ~~~A~~l~~~m~~~g~~p 428 (851)
.+.|.++++.+...|-.+
T Consensus 50 ~~HA~kl~~~i~~rgg~~ 67 (168)
T 3e6s_A 50 REHGLGFVDFANKRNIPI 67 (168)
T ss_dssp HHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHcCCcc
Confidence 456667777666665433
No 428
>2cih_A Ferritin heavy chain; apoferritin, ferroxidase, DI-iron non-heme protein, iron storage, iron, metal-binding, oxidoreductase, phosphorylation; 1.5A {Homo sapiens} PDB: 2chi_A 2cei_A 1fha_A 2fha_A 2cn7_A 2iu2_A 2clu_A 2cn6_A 3ajo_A 3ajq_A 3ajp_A 3erz_A 3es3_A 2z6m_A 1r03_A
Probab=20.61 E-value=3e+02 Score=25.36 Aligned_cols=20 Identities=15% Similarity=0.112 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHcCCCCCC
Q 038852 332 KEEAQALFEQMLDNHQPPNI 351 (851)
Q Consensus 332 ~~~A~~l~~~m~~~~~~p~~ 351 (851)
.+.|.++++.+...|..|..
T Consensus 64 ~~HA~kl~~~i~~rgg~~~l 83 (183)
T 2cih_A 64 REHAEKLMKLQNQRGGRIFL 83 (183)
T ss_dssp HHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHCCCcccc
Confidence 45667777777776666643
No 429
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=20.57 E-value=2.4e+02 Score=26.31 Aligned_cols=13 Identities=15% Similarity=0.317 Sum_probs=5.4
Q ss_pred HcCCHHHHHHHHH
Q 038852 223 DAGRIGEAVDLLR 235 (851)
Q Consensus 223 ~~g~~~~A~~l~~ 235 (851)
..|+++....+++
T Consensus 15 ~~g~~~~v~~ll~ 27 (231)
T 3aji_A 15 YSGKLDELKERIL 27 (231)
T ss_dssp HHTCHHHHHHHHH
T ss_pred HhCCHHHHHHHHH
Confidence 3444444444433
Done!