BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038853
(422 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WIJ|A Chain A, Solution Structure Of The Dna-Binding Domain Of Ethylene-
Insensitive3-Like3
Length = 140
Score = 174 bits (441), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 82/123 (66%), Positives = 97/123 (78%), Gaps = 1/123 (0%)
Query: 87 LHELQDTTLGSLLSALMQHCVPPQRKFPLERGLAPPWWPTGSEAWWGEQGTSKEHGPPPY 146
L +LQD TLGSLLS+LMQHC PPQRK+PLE+G PPWWPTG+E WW + G K PP Y
Sbjct: 12 LQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGTPPPWWPTGNEEWWVKLGLPKSQSPP-Y 70
Query: 147 RKPHDLRKAWKVSVLAAVIKHMSPNLNKIRRLVKQSKCLQHKMTAKETQTWSKVVNKEES 206
RKPHDL+K WKV VL AVI HM P++ KI+R V+QSKCLQ KMTAKE+ W V+N+EES
Sbjct: 71 RKPHDLKKMWKVGVLTAVINHMLPDIAKIKRHVRQSKCLQDKMTAKESAIWLAVLNQEES 130
Query: 207 LLQ 209
L+Q
Sbjct: 131 LIQ 133
>pdb|2FTY|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FVK|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVM|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
Length = 559
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 9 LKYMVKIMEV-CKGQGFVYGIVPERGKAVTGSSDS-LREWWKDNVRFDKNA 57
L M+K++E+ C VYG+ P++G + G SD+ L W+ D+ + + N+
Sbjct: 413 LTSMMKLVEIQCTNPAKVYGMYPQKGSILPGVSDADLVIWYPDDSKKEYNS 463
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 7 SILKYMVKIMEVCKGQGFVYGIVPERGKAVTGSSDSLREWWKD-NVRF 53
++L Y+ I+ V G+ VYGI + G ++ LR + KD NVRF
Sbjct: 219 AVLDYLSDIIHVVYGEPGVYGIFSQPKGTRNGINEFLRGYLKDENVRF 266
>pdb|4GNK|B Chain B, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|D Chain D, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 1235
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 166 KHMSPNLNKIRRLVKQSKCLQHKMTAKETQTWSKVVNKEESLL-QLTKKC 214
+H++ ++N IRRL + K ++ A + Q ++ +E LL QL ++C
Sbjct: 1128 RHITESVNSIRRLEEAQKQRHDRLVAGQQQVLQQLAEEEPKLLAQLAQEC 1177
>pdb|4GNK|E Chain E, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 259
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 166 KHMSPNLNKIRRLVKQSKCLQHKMTAKETQTWSKVVNKEESLL-QLTKKC 214
+H++ ++N IRRL + K ++ A + Q ++ +E LL QL ++C
Sbjct: 194 RHITESVNSIRRLEEAQKQRHDRLVAGQQQVLQQLAEEEPKLLAQLAQEC 243
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,689,116
Number of Sequences: 62578
Number of extensions: 588828
Number of successful extensions: 998
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 994
Number of HSP's gapped (non-prelim): 13
length of query: 422
length of database: 14,973,337
effective HSP length: 101
effective length of query: 321
effective length of database: 8,652,959
effective search space: 2777599839
effective search space used: 2777599839
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)