Query 038853
Match_columns 422
No_of_seqs 77 out of 101
Neff 2.4
Searched_HMMs 46136
Date Fri Mar 29 03:57:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038853.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038853hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03109 ETHYLENE-INSENSITIVE3 100.0 2E-120 4E-125 917.7 18.4 208 1-211 85-292 (599)
2 PF04873 EIN3: Ethylene insens 100.0 3E-103 6E-108 764.4 0.8 287 1-292 49-354 (354)
3 PF11001 DUF2841: Protein of u 96.7 0.0038 8.3E-08 55.2 6.2 84 84-183 14-103 (126)
4 KOG3263 Nucleic acid binding p 50.3 8.9 0.00019 36.8 1.5 22 11-39 145-166 (196)
5 PF00843 Arena_nucleocap: Aren 43.4 15 0.00032 39.6 1.9 157 6-198 269-484 (533)
6 KOG4215 Hepatocyte nuclear fac 33.5 9.2 0.0002 40.3 -1.3 24 276-299 40-63 (432)
7 PF08648 DUF1777: Protein of u 31.1 30 0.00065 31.0 1.7 18 21-39 132-149 (180)
8 PF07440 Caerin_1: Caerin 1 pr 28.4 32 0.0007 23.6 1.1 15 158-172 3-17 (24)
9 cd05014 SIS_Kpsf KpsF-like pro 25.3 82 0.0018 25.5 3.1 33 9-41 60-93 (128)
10 PRK10128 2-keto-3-deoxy-L-rham 21.0 1.3E+02 0.0028 29.6 4.1 40 8-54 195-234 (267)
11 PF11628 TCR_zetazeta: T-cell 20.9 15 0.00032 26.9 -1.7 6 24-29 13-18 (33)
12 PF15323 Ashwin: Developmental 20.8 70 0.0015 31.3 2.2 30 88-117 27-57 (214)
No 1
>PLN03109 ETHYLENE-INSENSITIVE3-like3 protein; Provisional
Probab=100.00 E-value=2e-120 Score=917.75 Aligned_cols=208 Identities=62% Similarity=1.138 Sum_probs=196.5
Q ss_pred CcchhhhHHHHHHHHHHHhhccccEEEeecCCCcccCCCchhHHHHhhhhccccccchhhhhcccCCCccCCCCCccCCC
Q 038853 1 MSRAQDSILKYMVKIMEVCKGQGFVYGIVPERGKAVTGSSDSLREWWKDNVRFDKNAPLAIAQYMDPLSEQDTGDLIDNP 80 (422)
Q Consensus 1 MsRAQdgiLkymlKmMEvC~aqGFVYGIipekGkPvsGaSdnlR~WWKekVrFd~ngP~aiaky~~~~~~~~~~~~~~~~ 80 (422)
|+||||||||||||||||||||||||||||||||||||||||||+|||||||||||||+||+||++........+. ..
T Consensus 85 m~raqdgilkymlk~me~c~a~gfvygiipekgkpvsg~sd~lr~wwk~~v~fd~~gp~ai~ky~~~~~~~~~~~~--~~ 162 (599)
T PLN03109 85 MSRAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSGASDNIRAWWKEKVKFDKNGPAAIAKYEAECLAMGEAES--SG 162 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcceeEEeccCCCCCCCCCchHHHHHHHHhcccccccHHHHHHhhhhccccccccc--CC
Confidence 8999999999999999999999999999999999999999999999999999999999999999995433222211 33
Q ss_pred CCcchhhhhhccchhhhHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCcccchhhhHHh
Q 038853 81 GSQMHYLHELQDTTLGSLLSALMQHCVPPQRKFPLERGLAPPWWPTGSEAWWGEQGTSKEHGPPPYRKPHDLRKAWKVSV 160 (422)
Q Consensus 81 ~~~~h~L~~LqDtTLgsllSaLmqhC~PPQRrfPLekG~~PPWWPtG~E~WW~~~g~~~~~gpPPYkKPHdLKKaWKV~V 160 (422)
.+++|+|+||||||||||||||||||+|||||||||||+||||||||+|+||+++|+|+++ +|||||||||||||||||
T Consensus 163 ~~~~~~l~~lqd~tLgsllsalmqhC~Ppqr~~plekg~~PPWWPtg~E~WW~~~g~~~~~-~pPykkphdLkK~wKv~v 241 (599)
T PLN03109 163 NNSQHSLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGVPPPWWPSGNEDWWVKLGLPKGQ-SPPYKKPHDLKKMWKVGV 241 (599)
T ss_pred cccHHHHHHHHHhHHHHHHHHHHhhcCChhhcCCCCCCCCCCCCCCCCcchhhhcCCCCCC-CCCCCCchhhhhHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999986 599999999999999999
Q ss_pred hHhhhhccCCChHHHHHHHhhhhhhhcchhhHHHhHHHHHHHhHHHHhhhc
Q 038853 161 LAAVIKHMSPNLNKIRRLVKQSKCLQHKMTAKETQTWSKVVNKEESLLQLT 211 (422)
Q Consensus 161 LtAVIKHmsPd~~kir~lVrqSkcLQdKmTakEs~tW~~vl~qEe~l~~~~ 211 (422)
||||||||||||+|||+|||||||||||||||||+||++||+|||+|++.+
T Consensus 242 l~avikhmsPd~~kir~~vr~Sk~lqdkmtakEs~~W~~vl~~Ee~~~~~~ 292 (599)
T PLN03109 242 LTAVIKHMSPDFDKIRRHVRQSKCLQDKMTAKESLIWLGVLNREESLIRQP 292 (599)
T ss_pred HHHHHHHhCccHHHHHHHHHhchhHHhhhhHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999999864
No 2
>PF04873 EIN3: Ethylene insensitive 3; InterPro: IPR006957 Ethylene insensitive 3 (EIN3) proteins are a family of plant DNA-binding proteins that regulate transcription in response to the gaseous plant hormone ethylene, and are essential for ethylene-mediated responses. In the presence of ethylene, dark-grown dicotyledonous seedlings undergo dramatic morphological changes collectively known as the 'triple response'. In Arabidopsis, these changes consist of a radial swelling of the hypocotyl, an exaggeration in the curvature of the apical hook, and the inhibition of cell elongation in the hypocotyl and root.; GO: 0005634 nucleus; PDB: 1WIJ_A.
Probab=100.00 E-value=2.7e-103 Score=764.38 Aligned_cols=287 Identities=45% Similarity=0.771 Sum_probs=95.7
Q ss_pred CcchhhhHHHHHHHHHHHhhccccEEEeecCCCcccCCCchhHHHHhhhhccccccchhhhhcccCC-CccCCCCCccCC
Q 038853 1 MSRAQDSILKYMVKIMEVCKGQGFVYGIVPERGKAVTGSSDSLREWWKDNVRFDKNAPLAIAQYMDP-LSEQDTGDLIDN 79 (422)
Q Consensus 1 MsRAQdgiLkymlKmMEvC~aqGFVYGIipekGkPvsGaSdnlR~WWKekVrFd~ngP~aiaky~~~-~~~~~~~~~~~~ 79 (422)
|+||||||||||+||||||||+||||||||++||||+|+|||||+||||+|+||+|||+||++|++. .....+..|...
T Consensus 49 ~s~aqd~ilkym~~~m~~~n~~gfvy~~~~~~~k~~~~~s~slr~wwke~v~~~~ng~~~vs~~~~~~l~ls~~~~lq~~ 128 (354)
T PF04873_consen 49 MSRAQDGILKYMFPEMELCNAPGFVYTIISSSGKPVEGVSPSLRAWWKEEVEFDRNGPIQVSKYDPKDLVLSGERGLQTE 128 (354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhhHHHHhhccccccccCceeeecCCCCCCCccCCcCCcccchhhhhhhcCcccccccCCcchhhhcccCCCCcccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999762 111122222223
Q ss_pred CCCcchhhhhhccchhhhHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCcccchhhhHH
Q 038853 80 PGSQMHYLHELQDTTLGSLLSALMQHCVPPQRKFPLERGLAPPWWPTGSEAWWGEQGTSKEHGPPPYRKPHDLRKAWKVS 159 (422)
Q Consensus 80 ~~~~~h~L~~LqDtTLgsllSaLmqhC~PPQRrfPLekG~~PPWWPtG~E~WW~~~g~~~~~gpPPYkKPHdLKKaWKV~ 159 (422)
.....|+|++||||||||||+||||||+||||||||++|++|||||||+|.||+++|+++++||||||+||||||||||+
T Consensus 129 rs~~~~sl~~vpDTd~gSLL~a~~q~~~~p~~~~~~~~~~~~Pwwp~gkE~~~~~~g~s~~~~~~~~k~p~~lkk~~k~~ 208 (354)
T PF04873_consen 129 RSSESTSLSLVPDTDLGSLLSALMQHCTPPQRCFPLEKGIEPPWWPTGKELWWGELGCSKDTGPPPYKKPHDLKKAWKVS 208 (354)
T ss_dssp -------STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT--------GGG--HHHHHH
T ss_pred cccccccccccCCcccccccccccccCCCCccCcccccccCCCCCCCCccccccccCCcCCCCCCCccChHHhhhccccc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhhccCCChHHHHHHHhhhhhhhcchhhHHHhHHHHHHHhHHHHhhhccccc----------cccCCCCCCCcccc
Q 038853 160 VLAAVIKHMSPNLNKIRRLVKQSKCLQHKMTAKETQTWSKVVNKEESLLQLTKKCL----------KISSNEDHKEEEAP 229 (422)
Q Consensus 160 VLtAVIKHmsPd~~kir~lVrqSkcLQdKmTakEs~tW~~vl~qEe~l~~~~~~c~----------~is~~~~~~~~~~~ 229 (422)
||+||||||+|+|.+||++|++|+|||+|||++||.+|+++++|||++.+.....+ .++ ++++. .
T Consensus 209 ~L~~~ikH~~~~~~~me~seldtq~LQnK~SkrqSfa~~s~~~qEEk~~~~v~a~s~S~~kqsp~vt~e-~~qee----e 283 (354)
T PF04873_consen 209 VLRAEIKHMSPTFDEMEESELDTQYLQNKMSKRQSFAWFSNPGQEEKECRTVCAHSRSLRKQSPKVTLE-CEQEE----E 283 (354)
T ss_dssp HHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S-------------------------------
T ss_pred chhhhhccCCcchHHHHHhhhhhHHHHHHHhhhhhhhhhcccCchhhhccccCCCcchhhccCCCcccc-ccchh----h
Confidence 99999999999999999999999999999999999999999999999876422111 111 11111 1
Q ss_pred cccCC--CccccCC---CCCCCccccccccccccccc--c-cccccCCCCCCCCCCCCCCccccccCcccc
Q 038853 230 IVGKG--KHVNVPS---CHTSNVGEKRKCVFEREIVN--D-TQYACENSKCPQSELGFGFVDKNSRSDHES 292 (422)
Q Consensus 230 ~~~~~--~~~~~~~---~~~~~~~~KRK~~~~~~~~~--d-~vYTCen~qCP~Sd~~~GF~DRnsR~~Hq~ 292 (422)
..|.. ....+.. .....++.||+..++..... . .+|+|+++|||+|+..+||.|+|.|++|+|
T Consensus 284 ~qG~~Es~i~~vq~~~~~~~~~~v~Qrkrkpgd~a~~s~~~~srlCqssq~~gsE~eli~~Dkn~isqn~y 354 (354)
T PF04873_consen 284 VQGKEESKIKHVQAVSATNGFPVVCQRKRKPGDYAKCSIKGVSRLCQSSQCPGSETELIFADKNGISQNPY 354 (354)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ccCccccccccccccccccCCccccccCCCCCccccccccccccCCccccCCCcccccCcCCccccccCCC
Confidence 11111 1111111 12345778888555544333 2 589999999999999999999999999997
No 3
>PF11001 DUF2841: Protein of unknown function (DUF2841); InterPro: IPR021264 This family of proteins with unknown function are all present in yeast.
Probab=96.72 E-value=0.0038 Score=55.23 Aligned_cols=84 Identities=23% Similarity=0.574 Sum_probs=66.4
Q ss_pred chhhhhhccchhhhHHHHhhhcCCC-CCCCCCCCCC--CCCCCCCCCCcccccccCCCCCCCCCCCCCCcccchhhhHHh
Q 038853 84 MHYLHELQDTTLGSLLSALMQHCVP-PQRKFPLERG--LAPPWWPTGSEAWWGEQGTSKEHGPPPYRKPHDLRKAWKVSV 160 (422)
Q Consensus 84 ~h~L~~LqDtTLgsllSaLmqhC~P-PQRrfPLekG--~~PPWWPtG~E~WW~~~g~~~~~gpPPYkKPHdLKKaWKV~V 160 (422)
-..+..||-+.--.+..|-..-=.| -|.+||-.+| ..|+|||.+ .++|-|.-|+|.-.|.+
T Consensus 14 ~~~F~~lqQ~~Ck~IAKawIK~IEPkKQ~~~PY~~g~~tkP~WWP~~----------------V~HkEPDHL~K~eRi~L 77 (126)
T PF11001_consen 14 ESAFKALQQVNCKQIAKAWIKVIEPKKQAKYPYNGGDKTKPPWWPED----------------VRHKEPDHLKKPERIRL 77 (126)
T ss_pred HHHHHHcChhHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCC----------------CCcCCCCccCHHHHHHH
Confidence 3456677777777777777766566 5899999998 599999932 58999999999999999
Q ss_pred hHhhhhccCC---ChHHHHHHHhhhh
Q 038853 161 LAAVIKHMSP---NLNKIRRLVKQSK 183 (422)
Q Consensus 161 LtAVIKHmsP---d~~kir~lVrqSk 183 (422)
|..+++.+.| ..++++.+.+.+.
T Consensus 78 LihIlr~l~~~~~t~~kL~~a~~~~~ 103 (126)
T PF11001_consen 78 LIHILRNLRPHGITVDKLEEATQDVR 103 (126)
T ss_pred HHHHHHhccccCCcHHHHHHHHHHHH
Confidence 9999998877 6677776665554
No 4
>KOG3263 consensus Nucleic acid binding protein [General function prediction only]
Probab=50.29 E-value=8.9 Score=36.83 Aligned_cols=22 Identities=45% Similarity=0.637 Sum_probs=17.2
Q ss_pred HHHHHHHHhhccccEEEeecCCCcccCCC
Q 038853 11 YMVKIMEVCKGQGFVYGIVPERGKAVTGS 39 (422)
Q Consensus 11 ymlKmMEvC~aqGFVYGIipekGkPvsGa 39 (422)
-|||||.+| |+=--|||+|.|+
T Consensus 145 EMmk~MGf~-------gFDtTkgkkv~g~ 166 (196)
T KOG3263|consen 145 EMMKIMGFS-------GFDTTKGKKVGGS 166 (196)
T ss_pred HHHHHhCcC-------cccCCCCccccCc
Confidence 488888554 6678999999886
No 5
>PF00843 Arena_nucleocap: Arenavirus nucleocapsid protein; InterPro: IPR000229 Arenaviruses are single stranded RNA viruses. The arenavirus S RNAs that have been characterised include conserved terminal sequences, an ambisense arrangement of the coding regions for the precursor glycoprotein (GPC) and nucleocapsid (N) proteins and an intergenic region capable of forming a base-paired "hairpin" structure. The mature glycoproteins that result are G1 and G2 and the N protein []. This family represents the nucleocapsid protein that encapsulates the viral ssRNA [].; GO: 0019013 viral nucleocapsid; PDB: 3MX5_A 3MX2_C 3MWT_C 3Q7C_A 3MWP_B 3Q7B_A 3T5Q_E 3T5N_A 3R3L_B.
Probab=43.36 E-value=15 Score=39.65 Aligned_cols=157 Identities=24% Similarity=0.412 Sum_probs=72.2
Q ss_pred hhHHHHHHHHHHHhhccccEEEeecC----------------CCcccCCCchhH--HHHhhhhccccccchhhhhcccCC
Q 038853 6 DSILKYMVKIMEVCKGQGFVYGIVPE----------------RGKAVTGSSDSL--REWWKDNVRFDKNAPLAIAQYMDP 67 (422)
Q Consensus 6 dgiLkymlKmMEvC~aqGFVYGIipe----------------kGkPvsGaSdnl--R~WWKekVrFd~ngP~aiaky~~~ 67 (422)
+.|+|-+|+ |=++-|..-+..|- .|=|--||--.+ |+|=.--|-|+...+.. +.
T Consensus 269 ~~iiK~~L~---vK~~e~MFv~~~pG~RNPYENlLYKlCLSGeGWPYI~SRSqI~GRAWDNT~VDl~~~p~~~-----~~ 340 (533)
T PF00843_consen 269 STIIKAVLK---VKRREGMFVSETPGQRNPYENLLYKLCLSGEGWPYIGSRSQIKGRAWDNTTVDLTGKPDSG-----PP 340 (533)
T ss_dssp HHHHHHHHH---HHHHHT----SSSSS--HHHHHHHHHHH-SSB-TTTSBGTT--S-HHHHEEEE---------------
T ss_pred HHHHHHHHH---HHHhcCcccCCCCCCCCcHHHHHHHHhcCCCCCCceeecccccccccCCcEEeCCCCCCCC-----CC
Confidence 467777665 44555555555554 456666665555 88988889998877511 11
Q ss_pred CccCCCCCccCCCCCcchhhhhhccchhhhHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCC-----
Q 038853 68 LSEQDTGDLIDNPGSQMHYLHELQDTTLGSLLSALMQHCVPPQRKFPLERGLAPPWWPTGSEAWWGEQGTSKEHG----- 142 (422)
Q Consensus 68 ~~~~~~~~~~~~~~~~~h~L~~LqDtTLgsllSaLmqhC~PPQRrfPLekG~~PPWWPtG~E~WW~~~g~~~~~g----- 142 (422)
.+..+.+ ...+-.|.+.|- ..|...|+.=+|-- -.|=.=.|-|.+++
T Consensus 341 ~p~~ng~------~~~l~~Lt~~qe----~~lk~am~~Ldp~~------------------ttWiDIEG~p~DPVElAiy 392 (533)
T PF00843_consen 341 PPVRNGG------NPRLSGLTESQE----MQLKDAMEKLDPNA------------------TTWIDIEGPPNDPVELAIY 392 (533)
T ss_dssp -----------------SSS-HHHH----HHHHHHHCCS-TTS-------------------EEEEEESETTSESEEEEE
T ss_pred CccCCCC------CCCCCCCCHHHH----HHHHHHHHhCCCCC------------------CeeEecCCCCCCCeEEEEe
Confidence 1111211 112223444443 34556666666642 24555556555533
Q ss_pred -------CCCCCCCcccchhh-----------------hHHhhHhhhhccCCCh-------HHHHHHHhh-----hhhhh
Q 038853 143 -------PPPYRKPHDLRKAW-----------------KVSVLAAVIKHMSPNL-------NKIRRLVKQ-----SKCLQ 186 (422)
Q Consensus 143 -------pPPYkKPHdLKKaW-----------------KV~VLtAVIKHmsPd~-------~kir~lVrq-----SkcLQ 186 (422)
--=||+|||.|-.= .-|+++|||+|+-++. +-||+|.-. =|-+-
T Consensus 393 QP~sg~YiHcyR~P~D~K~FK~~SKysHGillkDl~~aqPGL~S~vi~~LP~~MVlT~QGsDDIrkLld~hGRrDiKlvD 472 (533)
T PF00843_consen 393 QPSSGNYIHCYREPHDEKQFKNQSKYSHGILLKDLENAQPGLTSAVIELLPKNMVLTCQGSDDIRKLLDMHGRRDIKLVD 472 (533)
T ss_dssp ETTTTEEEEEE---S-HHHHHHHHHHTT-B-GGGCTTB-TTHHHHHHHHS-TT-EEEESSHHHHHHHHHCTT-TTSEEEE
T ss_pred ccCCCcEEEEecCCcchhhhcccccccccccHHHHhhhccchHHHHHHhCCcCcEEEeeChHHHHHHHHhcCCCcceEEE
Confidence 12399999977431 2378999999999864 889998742 34455
Q ss_pred cchhhHHHhHHH
Q 038853 187 HKMTAKETQTWS 198 (422)
Q Consensus 187 dKmTakEs~tW~ 198 (422)
=|||+.+|....
T Consensus 473 V~lt~eqaR~FE 484 (533)
T PF00843_consen 473 VKLTSEQARKFE 484 (533)
T ss_dssp ----HHHHTTTH
T ss_pred eecCHHHHHHHH
Confidence 588988887653
No 6
>KOG4215 consensus Hepatocyte nuclear factor 4 and similar steroid hormone receptors [Transcription]
Probab=33.49 E-value=9.2 Score=40.28 Aligned_cols=24 Identities=21% Similarity=0.548 Sum_probs=20.8
Q ss_pred CCCCCCccccccCcccccCccCCC
Q 038853 276 ELGFGFVDKNSRSDHESHCTYTTD 299 (422)
Q Consensus 276 d~~~GF~DRnsR~~Hq~~C~Yr~~ 299 (422)
|.+=||--|+-|.+|+|+|+|+..
T Consensus 40 dGCKGFFRRSVrk~~~YtCRF~k~ 63 (432)
T KOG4215|consen 40 DGCKGFFRRSVRKNHQYTCRFNKQ 63 (432)
T ss_pred CcchHHHHHHHHhcceeeeecccc
Confidence 456899999999999999999843
No 7
>PF08648 DUF1777: Protein of unknown function (DUF1777); InterPro: IPR013957 This entry shows eukaryotic proteins of unknown function. Some of the proteins are putative nucleic acid binding proteins.
Probab=31.13 E-value=30 Score=30.95 Aligned_cols=18 Identities=39% Similarity=0.602 Sum_probs=15.8
Q ss_pred ccccEEEeecCCCcccCCC
Q 038853 21 GQGFVYGIVPERGKAVTGS 39 (422)
Q Consensus 21 aqGFVYGIipekGkPvsGa 39 (422)
.-|| -|+=--|||.|.|.
T Consensus 132 ~MGf-~gF~TTKgK~v~gn 149 (180)
T PF08648_consen 132 MMGF-GGFGTTKGKKVPGN 149 (180)
T ss_pred hhcc-cccccCCCCccCCC
Confidence 4488 89999999999997
No 8
>PF07440 Caerin_1: Caerin 1 protein; InterPro: IPR010000 This family consists of several caerin 1 proteins from Litoria species, Australian tree frogs. The caerin 1 peptides are among the most powerful of the broad-spectrum antibiotic amphibian peptides []. These peptides are excreted from amphibian skin, and can interact with and disrupt bacterial membranes, leading to the permeabilisation of the cell membrane. Caerin 1.1 forms a helix-bend-helix sturcture, where both helices are required for activity, as well as the bend region for flexibility.; GO: 0005576 extracellular region
Probab=28.42 E-value=32 Score=23.59 Aligned_cols=15 Identities=47% Similarity=0.738 Sum_probs=12.9
Q ss_pred HHhhHhhhhccCCCh
Q 038853 158 VSVLAAVIKHMSPNL 172 (422)
Q Consensus 158 V~VLtAVIKHmsPd~ 172 (422)
.+||.+|.||+.|.+
T Consensus 3 ~~vlgsvakhvlphv 17 (24)
T PF07440_consen 3 FSVLGSVAKHVLPHV 17 (24)
T ss_pred HHHHHHHHHHhcccc
Confidence 589999999999864
No 9
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=25.32 E-value=82 Score=25.49 Aligned_cols=33 Identities=15% Similarity=0.229 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhccc-cEEEeecCCCcccCCCch
Q 038853 9 LKYMVKIMEVCKGQG-FVYGIVPERGKAVTGSSD 41 (422)
Q Consensus 9 LkymlKmMEvC~aqG-FVYGIipekGkPvsGaSd 41 (422)
-+.++++++.|+.+| .|.+|....+.|+...+|
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad 93 (128)
T cd05014 60 TDELLNLLPHLKRRGAPIIAITGNPNSTLAKLSD 93 (128)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCCCchhhhCC
Confidence 478999999999988 799999999999887766
No 10
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=20.99 E-value=1.3e+02 Score=29.56 Aligned_cols=40 Identities=10% Similarity=0.136 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhccccEEEeecCCCcccCCCchhHHHHhhhhcccc
Q 038853 8 ILKYMVKIMEVCKGQGFVYGIVPERGKAVTGSSDSLREWWKDNVRFD 54 (422)
Q Consensus 8 iLkymlKmMEvC~aqGFVYGIipekGkPvsGaSdnlR~WWKekVrFd 54 (422)
+..-+-++.++|++.|-..||+. ++.+..+.|...-++|=
T Consensus 195 v~~ai~~v~~a~~~~Gk~~G~~~-------~~~~~a~~~~~~G~~~v 234 (267)
T PRK10128 195 VQRIIETSIRRIRAAGKAAGFLA-------VDPDMAQKCLAWGANFV 234 (267)
T ss_pred HHHHHHHHHHHHHHcCCeEEEcC-------CCHHHHHHHHHcCCcEE
Confidence 55667889999999999999864 44466777776667773
No 11
>PF11628 TCR_zetazeta: T-cell surface glycoprotein CD3 zeta chain; InterPro: IPR021663 The TCR complex of T-lymphocytes consists of either a TCR alpha/beta or TCR gamma/delta heterodimer co-expressed at the cell surface with the invariant subunits of CD3 labelled gamma, delta, epsilon, zeta, and eta []. The zeta subunit forms either homodimers or heterodimers with eta [], but eta homodimers have not been observed. The structure of the zetazeta transmembrane dimer consists of a left-handed coiled coil with polar contacts. Two aspartic acids are critical for zetazeta dimerisation and assembly with TCR []. The high affinity immunoglobulin epsilon receptor (IgE Fc receptor) subunit gamma associates with a variety of FcR alpha chains to form a functional signaling complex. The gamma subunit has a critical role in allowing the IgE Fc receptor to reach the cell surface and regulates several aspects of the immune response []. This family includes both CD3 zeta subunits and IgE Fc receptor gamma subunits. The gamma chain of the high affinity Fc receptor for IgE has significant structural homology to CD3 zeta and the related CD3 eta subunit and can facilitate T cell receptor expression and signaling in the absence of CD3 zeta and CD3 eta [].; PDB: 2HAC_B.
Probab=20.89 E-value=15 Score=26.90 Aligned_cols=6 Identities=67% Similarity=1.752 Sum_probs=3.7
Q ss_pred cEEEee
Q 038853 24 FVYGIV 29 (422)
Q Consensus 24 FVYGIi 29 (422)
|+||||
T Consensus 13 ~iYgii 18 (33)
T PF11628_consen 13 FIYGII 18 (33)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 566665
No 12
>PF15323 Ashwin: Developmental protein
Probab=20.79 E-value=70 Score=31.27 Aligned_cols=30 Identities=30% Similarity=0.491 Sum_probs=24.2
Q ss_pred hhhccchhhhHHHHhhhcCCC-CCCCCCCCC
Q 038853 88 HELQDTTLGSLLSALMQHCVP-PQRKFPLER 117 (422)
Q Consensus 88 ~~LqDtTLgsllSaLmqhC~P-PQRrfPLek 117 (422)
.+++-.+-..|+.-..|||.| |||.+|.-+
T Consensus 27 ~~~~~~~kd~L~~Ly~q~~~PlPQR~~~~sR 57 (214)
T PF15323_consen 27 ENDEKLDKDELTELYVQHAMPLPQRDLPDSR 57 (214)
T ss_pred cchhhcCHHHHHHHHHHHhcCccccccccCc
Confidence 345566778899999999999 899999644
Done!