Query 038853
Match_columns 422
No_of_seqs 77 out of 101
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 06:01:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038853.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038853hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wij_A Ethylene-insensitive3-l 100.0 2.1E-81 7.1E-86 546.4 3.2 131 79-210 4-134 (140)
2 3q7c_A Nucleoprotein; deddh ex 59.5 4.9 0.00017 38.3 2.7 98 96-216 44-182 (243)
3 3mwp_A Nucleoprotein; structur 42.4 12 0.00042 39.0 2.7 174 6-216 284-516 (577)
4 2hac_A T-cell surface glycopro 19.1 11 0.00037 26.6 -1.7 6 24-29 13-18 (33)
5 3e8v_A Possible transglutamina 15.1 59 0.002 26.4 1.4 13 28-40 7-19 (82)
6 1vd2_A Protein kinase C, IOTA 14.7 1E+02 0.0036 24.9 2.8 32 11-42 31-65 (89)
7 2d42_A Non-toxic crystal prote 13.8 68 0.0023 30.7 1.7 14 15-28 13-26 (249)
8 1zei_A Insulin, B28Asp-X-MCR; 12.8 36 0.0012 25.4 -0.5 13 15-27 15-27 (53)
9 1h8l_A Carboxypeptidase GP180 11.6 1.6E+02 0.0054 27.9 3.4 32 11-44 291-324 (380)
10 1a31_A Protein (topoisomerase 11.5 83 0.0028 33.3 1.6 35 264-298 209-244 (591)
No 1
>1wij_A Ethylene-insensitive3-like 3 protein; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.140.5.1
Probab=100.00 E-value=2.1e-81 Score=546.41 Aligned_cols=131 Identities=63% Similarity=1.143 Sum_probs=125.4
Q ss_pred CCCCcchhhhhhccchhhhHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCcccchhhhH
Q 038853 79 NPGSQMHYLHELQDTTLGSLLSALMQHCVPPQRKFPLERGLAPPWWPTGSEAWWGEQGTSKEHGPPPYRKPHDLRKAWKV 158 (422)
Q Consensus 79 ~~~~~~h~L~~LqDtTLgsllSaLmqhC~PPQRrfPLekG~~PPWWPtG~E~WW~~~g~~~~~gpPPYkKPHdLKKaWKV 158 (422)
...+++|+|+||||||||||||||||||+|||||||||||+||||||||+|+||+++|+|++|| |||||||||||||||
T Consensus 4 ~~~~~~h~L~~Lqd~TLgsllsaLmqhC~PPQR~~Plekg~~PPWWPtG~E~WW~~lGl~~~~~-PPYkkPhdLkKawKV 82 (140)
T 1wij_A 4 GSSGSQFVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGTPPPWWPTGNEEWWVKLGLPKSQS-PPYRKPHDLKKMWKV 82 (140)
T ss_dssp ----CCCCSTTSCHHHHHHHHHHHSSSSSSCTTSCCTTTCCHHHHCCCSCCHHHHHHTCCTTCC-CCCCCGGGCCHHHHH
T ss_pred cccccHHHHHHHHHHhHHHHHHHHHhhCCCchhcCCCCCCCCcCCCCCCCchhHHhcCCCCCCC-CCCCCchhhhHHHHH
Confidence 3467899999999999999999999999999999999999999999999999999999999997 999999999999999
Q ss_pred HhhHhhhhccCCChHHHHHHHhhhhhhhcchhhHHHhHHHHHHHhHHHHhhh
Q 038853 159 SVLAAVIKHMSPNLNKIRRLVKQSKCLQHKMTAKETQTWSKVVNKEESLLQL 210 (422)
Q Consensus 159 ~VLtAVIKHmsPd~~kir~lVrqSkcLQdKmTakEs~tW~~vl~qEe~l~~~ 210 (422)
+|||||||||||||+|||+|||||||||||||||||+||++||||||+|++.
T Consensus 83 ~VLtAVIKHmsPd~~kir~lVrqSk~lqdKmTakEs~~W~~vl~~Ee~~~~~ 134 (140)
T 1wij_A 83 GVLTAVINHMLPDIAKIKRHVRQSKCLQDKMTAKESAIWLAVLNQEESLIQQ 134 (140)
T ss_dssp HHHHHHHHHTGGGHHHHHHTTTTSSSSTTTCCSHHHHHHHHHHTTTTTCSCC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhhhhHHhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999874
No 2
>3q7c_A Nucleoprotein; deddh exonuclease, 3' exonuclease, hydrolase; 1.50A {Lassa virus} PDB: 3q7b_A 4fvu_A
Probab=59.51 E-value=4.9 Score=38.31 Aligned_cols=98 Identities=20% Similarity=0.360 Sum_probs=63.5
Q ss_pred hhHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCC------------CCCCCCCcccchhh-------
Q 038853 96 GSLLSALMQHCVPPQRKFPLERGLAPPWWPTGSEAWWGEQGTSKEHG------------PPPYRKPHDLRKAW------- 156 (422)
Q Consensus 96 gsllSaLmqhC~PPQRrfPLekG~~PPWWPtG~E~WW~~~g~~~~~g------------pPPYkKPHdLKKaW------- 156 (422)
..+|...|+.=+|-- -.|=.=.|-|.+++ --=||+|||.|-.=
T Consensus 44 e~~vk~am~~LdP~~------------------ttWiDIEG~p~DPVElAiyQP~sg~YIHcyR~P~D~K~FK~~SKySH 105 (243)
T 3q7c_A 44 LMTLKDAMLQLDPNA------------------KTWMDIEGRPEDPVEIALYQPSSGCYIHFFREPTDLKQFKQDAKYSH 105 (243)
T ss_dssp HHHHHHHHTTSCTTS------------------CCEEEEESCTTSCSEEEEEETTTTEEEEEECCCSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCC------------------CeEEecCCCCCCCeEEEEeccCCCcEEEEecCCcchhhhcccCcccc
Confidence 345667777767643 24555666666643 11399999977431
Q ss_pred ----------hHHhhHhhhhccCCCh-------HHHHHHHhh-----hhhhhcchhhHHHhHHHHHHHhHHHHhhhcccc
Q 038853 157 ----------KVSVLAAVIKHMSPNL-------NKIRRLVKQ-----SKCLQHKMTAKETQTWSKVVNKEESLLQLTKKC 214 (422)
Q Consensus 157 ----------KV~VLtAVIKHmsPd~-------~kir~lVrq-----SkcLQdKmTakEs~tW~~vl~qEe~l~~~~~~c 214 (422)
.-|+++|||+|+-++. +-||+|.-. =|-+-=|||+.+|......| .-++-.-|
T Consensus 106 GillkDl~~aqPGL~S~vi~~LP~nMVlT~QGsDDIrkLld~hGRrDiKlIDV~lt~eqaR~FEd~V-----Wd~f~~LC 180 (243)
T 3q7c_A 106 GIDVTDLFATQPGLTSAVIDALPRNMVITCQGSDDIRKLLESQGRKDIKLIDIALSKTDSRKYENAV-----WDQYKDLC 180 (243)
T ss_dssp CBCGGGGTTBCTTHHHHHHHHSCTTCEEEESSHHHHHHHHHHTTCTTSEEEECCCCHHHHTTTHHHH-----HHHHGGGC
T ss_pred ceehhhhhhcCCchHHHHHHhCCcCcEEEeeChHHHHHHHHhcCCccceEEEeecCHHHHHHHHHHH-----HHHHHHHH
Confidence 2379999999999975 889999843 34455589998887654322 23555566
Q ss_pred cc
Q 038853 215 LK 216 (422)
Q Consensus 215 ~~ 216 (422)
-.
T Consensus 181 ~~ 182 (243)
T 3q7c_A 181 HM 182 (243)
T ss_dssp CC
T ss_pred Hh
Confidence 53
No 3
>3mwp_A Nucleoprotein; structural genomics, scottish structural PROT facility, SSPF, nuclear protein; 1.79A {Lassa virus josiah} PDB: 3mwt_A 3mx2_A* 3mx5_A* 3r3l_A 3t5q_A 3t5n_A
Probab=42.37 E-value=12 Score=38.95 Aligned_cols=174 Identities=21% Similarity=0.341 Sum_probs=92.8
Q ss_pred hhHHHHHHHHHHHhhccccEEEeecC----------------CCcccCCCchhH--HHHhhhhccccccchhhhhcccCC
Q 038853 6 DSILKYMVKIMEVCKGQGFVYGIVPE----------------RGKAVTGSSDSL--REWWKDNVRFDKNAPLAIAQYMDP 67 (422)
Q Consensus 6 dgiLkymlKmMEvC~aqGFVYGIipe----------------kGkPvsGaSdnl--R~WWKekVrFd~ngP~aiaky~~~ 67 (422)
++|||-+|++ =++-|..-.-.|- .|=|-.||--.+ |+|=.--|-|+...+.. .
T Consensus 284 ~~iiK~~L~v---K~~e~MFVs~~PG~RNPYENlLYKlCLSGeGWPYI~SRsqI~GRaWdNT~vdl~~~~~~~------~ 354 (577)
T 3mwp_A 284 DGILKSILKV---KKALGMFISDTPGERNPYENILYKICLSGDGWPYIASRTSITGRAWENTVVDLESDGKPQ------K 354 (577)
T ss_dssp HHHHHHHHHH---HHHHTCCCCSCCSSCCHHHHHHHHHHHCSSBCTTTSBCTTCCSCHHHHEEECC--------------
T ss_pred HHHHHHHHHH---HHhcCceecCCCCCCChHHHHHHHHhhCCCCCcceeeccccccccccCceEecCCCCCCC------C
Confidence 4677777654 3444544344443 466766666555 88988888888776322 1
Q ss_pred CccCCCCCccCCCCCcchhhhhhccchhhhHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCC-----
Q 038853 68 LSEQDTGDLIDNPGSQMHYLHELQDTTLGSLLSALMQHCVPPQRKFPLERGLAPPWWPTGSEAWWGEQGTSKEHG----- 142 (422)
Q Consensus 68 ~~~~~~~~~~~~~~~~~h~L~~LqDtTLgsllSaLmqhC~PPQRrfPLekG~~PPWWPtG~E~WW~~~g~~~~~g----- 142 (422)
.+..+.+..+...+. .-.|...| ..+|...|+.-+|-- -.|=.-.|-|.+++
T Consensus 355 ~p~rnG~~~~~~~~~-l~~L~~~q----e~~~k~~~~~ldp~~------------------ttWiDIEG~p~DPVE~Aiy 411 (577)
T 3mwp_A 355 ADSNNSSKSLQSAGF-TAGLTYSQ----LMTLKDAMLQLDPNA------------------KTWMDIEGRPEDPVEIALY 411 (577)
T ss_dssp ------------------CCCHHH----HHHHHHHGGGSCTTS------------------CEEEEEESCTTSCSEEEEE
T ss_pred CCccCcccccccCCc-ccCCCHHH----HHHHHHHHHhCCCCC------------------CeEEecCCCCCCCeEEEEe
Confidence 112222111111111 22333333 345666777767643 24555566665543
Q ss_pred -------CCCCCCCcccchhh-----------------hHHhhHhhhhccCCCh-------HHHHHHHhh-----hhhhh
Q 038853 143 -------PPPYRKPHDLRKAW-----------------KVSVLAAVIKHMSPNL-------NKIRRLVKQ-----SKCLQ 186 (422)
Q Consensus 143 -------pPPYkKPHdLKKaW-----------------KV~VLtAVIKHmsPd~-------~kir~lVrq-----SkcLQ 186 (422)
--=||+|||.|-.= .-|+++|||+|+-++. +-||+|.-. =|-+-
T Consensus 412 QP~~g~YiHcyR~P~D~K~FK~~SkysHGillkDl~~aqPGL~S~vi~~LP~~mV~T~QGsdDI~kLld~hGR~DiK~iD 491 (577)
T 3mwp_A 412 QPSSGCYIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQPGLTSAVIDALPRNMVITCQGSDDIRKLLESQGRKDIKLID 491 (577)
T ss_dssp ETTTTEEEEEECCCSCHHHHHHHHHHTTCBCGGGGGGBCTTHHHHHHHHSCTTCEEEESSHHHHHHHHHHTTCTTCEEEE
T ss_pred ccCCCcEEEEecCCcchhhhcccCccccceehhhhhhcCCchHHHHHHhCCcCcEEEeeChHHHHHHHHhcCCccceEEE
Confidence 12399999976431 2378999999999864 889999843 34455
Q ss_pred cchhhHHHhHHHHHHHhHHHHhhhcccccc
Q 038853 187 HKMTAKETQTWSKVVNKEESLLQLTKKCLK 216 (422)
Q Consensus 187 dKmTakEs~tW~~vl~qEe~l~~~~~~c~~ 216 (422)
=|||+.+|......| .-++-.-|-.
T Consensus 492 V~lt~eqaR~fEd~V-----W~~~~~LC~~ 516 (577)
T 3mwp_A 492 IALSKTDSRKYENAV-----WDQYKDLCHM 516 (577)
T ss_dssp CCCCHHHHTTTHHHH-----HHHHGGGCCC
T ss_pred eecCHHHHHHHHHHH-----HHHHHHHHHh
Confidence 589998887653322 2355555643
No 4
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=19.09 E-value=11 Score=26.60 Aligned_cols=6 Identities=50% Similarity=1.702 Sum_probs=3.7
Q ss_pred cEEEee
Q 038853 24 FVYGIV 29 (422)
Q Consensus 24 FVYGIi 29 (422)
|+||||
T Consensus 13 ~iYgii 18 (33)
T 2hac_A 13 FIYGVI 18 (33)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 566665
No 5
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}
Probab=15.08 E-value=59 Score=26.35 Aligned_cols=13 Identities=15% Similarity=0.460 Sum_probs=11.0
Q ss_pred eecCCCcccCCCc
Q 038853 28 IVPERGKAVTGSS 40 (422)
Q Consensus 28 IipekGkPvsGaS 40 (422)
|+-++||||+||.
T Consensus 7 V~d~~GkPV~gA~ 19 (82)
T 3e8v_A 7 VTDAEGQPVADAT 19 (82)
T ss_dssp EECTTSCBCTTCE
T ss_pred EEcCCCCCCCCCE
Confidence 6778999999984
No 6
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=14.74 E-value=1e+02 Score=24.87 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=27.6
Q ss_pred HHHHHHHHhhc---cccEEEeecCCCcccCCCchh
Q 038853 11 YMVKIMEVCKG---QGFVYGIVPERGKAVTGSSDS 42 (422)
Q Consensus 11 ymlKmMEvC~a---qGFVYGIipekGkPvsGaSdn 42 (422)
-.-||.++|+- +.|.==-+.|.|.||+=+||.
T Consensus 31 L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~ 65 (89)
T 1vd2_A 31 LCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQL 65 (89)
T ss_dssp HHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHH
T ss_pred HHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHH
Confidence 34588999994 789988899999999999986
No 7
>2d42_A Non-toxic crystal protein; parasporin, bacterial toxin, beta-pore-forming toxin, parasporal inclusion, hinge-bending motion; 2.07A {Bacillus thuringiensis}
Probab=13.83 E-value=68 Score=30.70 Aligned_cols=14 Identities=21% Similarity=0.477 Sum_probs=11.1
Q ss_pred HHHHhhccccEEEe
Q 038853 15 IMEVCKGQGFVYGI 28 (422)
Q Consensus 15 mMEvC~aqGFVYGI 28 (422)
||++|.|+|+-||.
T Consensus 13 ~~~~~~~~~~ty~~ 26 (249)
T 2d42_A 13 GMQYANSHQYTYGS 26 (249)
T ss_dssp HHHHHHHTTCEEEE
T ss_pred HHHHhhhccceecc
Confidence 57888888888874
No 8
>1zei_A Insulin, B28Asp-X-MCR; hormone, metabolic role, chemical activity, insulin mutant, cross-LINK, glucose metabolism, diabetes; 1.90A {Sus scrofa} SCOP: g.1.1.1 PDB: 6ins_E 1sju_A 2jzq_A
Probab=12.76 E-value=36 Score=25.44 Aligned_cols=13 Identities=38% Similarity=0.889 Sum_probs=10.7
Q ss_pred HHHHhhccccEEE
Q 038853 15 IMEVCKGQGFVYG 27 (422)
Q Consensus 15 mMEvC~aqGFVYG 27 (422)
|.-||..+||.|.
T Consensus 15 L~~vC~~rgf~~~ 27 (53)
T 1zei_A 15 LYLVCGERGFFYT 27 (53)
T ss_dssp HHHHHGGGCEEEE
T ss_pred HHHHHcccCeecC
Confidence 4568999999986
No 9
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A*
Probab=11.64 E-value=1.6e+02 Score=27.89 Aligned_cols=32 Identities=13% Similarity=0.336 Sum_probs=22.5
Q ss_pred HHHHHHHHhhccccEEEeec--CCCcccCCCchhHH
Q 038853 11 YMVKIMEVCKGQGFVYGIVP--ERGKAVTGSSDSLR 44 (422)
Q Consensus 11 ymlKmMEvC~aqGFVYGIip--ekGkPvsGaSdnlR 44 (422)
-|+.+|+-| .|=|-|.|= +.|.||.||+=.+.
T Consensus 291 ~l~~~~~~v--~~~i~G~V~D~~~g~pi~~A~V~v~ 324 (380)
T 1h8l_A 291 SLLQFIKQV--HRGIWGFVLDATDGRGILNATISVA 324 (380)
T ss_dssp HHHHHHHGG--GCEEEEEEEETTTCSBCTTCEEEET
T ss_pred HHhhhhhhc--cccceEEEEeCCCCCccCceEEEEe
Confidence 355566654 467899874 47999999985444
No 10
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP: d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A* 1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A* 1lpq_A* 1rr8_C* 1ej9_A*
Probab=11.48 E-value=83 Score=33.33 Aligned_cols=35 Identities=14% Similarity=0.282 Sum_probs=18.4
Q ss_pred ccccCC-CCCCCCCCCCCCccccccCcccccCccCC
Q 038853 264 QYACEN-SKCPQSELGFGFVDKNSRSDHESHCTYTT 298 (422)
Q Consensus 264 vYTCen-~qCP~Sd~~~GF~DRnsR~~Hq~~C~Yr~ 298 (422)
++.|.- +.=|-.-.++.+.|=-+.+.-...|++..
T Consensus 209 tiNi~k~a~iP~pp~GhaWkdV~hd~tvtWia~w~~ 244 (591)
T 1a31_A 209 IINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTE 244 (591)
T ss_dssp EEECCTTSCCCCCSTTCCCSEEECCTTSCCSEEEEC
T ss_pred hhhhccCCCCCcCCCCCCcceeccCCceEEEEeChH
Confidence 444433 33454445555555555555556676665
Done!