BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038854
(353 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KRA|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRA|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRC|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRC|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRF|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRF|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRO|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRO|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRP|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3KRP|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3OAB|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAB|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
Length = 295
Score = 387 bits (994), Expect = e-108, Method: Compositional matrix adjust.
Identities = 186/294 (63%), Positives = 220/294 (74%), Gaps = 7/294 (2%)
Query: 67 FDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGH 126
FDF YM++KA +VN+AL+AAV +K+P+KIHESMRYSLLAGGKRVRP+LC+AAC+LVGG
Sbjct: 2 FDFDGYMLRKAKSVNKALEAAVQMKEPLKIHESMRYSLLAGGKRVRPMLCIAACELVGGD 61
Query: 127 ESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEXXXXXXXXXXXXXXF 186
ES AMPAAC++EMIHTMSL+HDDLPCMDND LRRGKPTNH +GE F
Sbjct: 62 ESTAMPAACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHMAFGESVAVLAGDALLSFAF 121
Query: 187 EHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQ-------AEKDLGIEHLEFIHEHKT 239
EH+A TKG P RIVR + ELA IG++GLVAGQ ++G++HLEFIH HKT
Sbjct: 122 EHVAAATKGAPPERIVRVLGELAVSIGSEGLVAGQVVDVCSEGMAEVGLDHLEFIHHHKT 181
Query: 240 XXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDL 299
+ EV KLR FA CIGLLFQVVDDILD+TKSSKELGKTAGKDL
Sbjct: 182 AALLQGSVVLGAILGGGKEEEVAKLRKFANCIGLLFQVVDDILDVTKSSKELGKTAGKDL 241
Query: 300 VADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 353
VADK TYPKL+G+E+SK+ AD+LN++AQ+QL F +A PLIALANYIAYR N
Sbjct: 242 VADKTTYPKLIGVEKSKEFADRLNREAQEQLLHFHPHRAAPLIALANYIAYRDN 295
>pdb|2J1P|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
pdb|2J1P|B Chain B, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
Length = 293
Score = 336 bits (862), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 169/293 (57%), Positives = 205/293 (69%), Gaps = 24/293 (8%)
Query: 71 SYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMA 130
SY+I+KA +VN+ALD+AV L++P+KIHE+ RYSLLAGGKRVRPVLC+AAC+LVGG ES+A
Sbjct: 15 SYIIRKADSVNKALDSAVPLREPLKIHEAXRYSLLAGGKRVRPVLCIAACELVGGEESLA 74
Query: 131 MPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEXXXXXXXXXXXXXXFEHIA 190
PAAC++E IHT SLIHDDLPC DND LRRGKPTNH +YGE FEH+A
Sbjct: 75 XPAACAVEXIHTXSLIHDDLPCXDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLA 134
Query: 191 VCTKG-VSPARIVRAIAELAKYIGADGLVAGQAE---------KDLGIEHLEFIHEHKTX 240
T VSPAR+VRA+ ELAK IG +GLVAGQ ++G+EHL+FIH HKT
Sbjct: 135 SATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTA 194
Query: 241 XXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLV 300
+D E+E+LR FARCIGLLFQVVDDILD+TKSS
Sbjct: 195 ALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSS------------ 242
Query: 301 ADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 353
KLTYPKL G+E+S++ A+KLN +A+ QL FD +K PL+ALANYIA RQN
Sbjct: 243 --KLTYPKLXGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIANRQN 293
>pdb|2J1O|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba
Length = 268
Score = 304 bits (778), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 157/286 (54%), Positives = 195/286 (68%), Gaps = 35/286 (12%)
Query: 71 SYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMA 130
SY+I+KA +VN+ALD+AV L++P+KIHE+MRYSLLAGGKRVRPVLC+AAC+LVGG ES+A
Sbjct: 15 SYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLA 74
Query: 131 MPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEXXXXXXXXXXXXXXFEHIA 190
MPAAC++EMIHTMSLIHDD +YGE FEH+A
Sbjct: 75 MPAACAVEMIHTMSLIHDD------------------VYGEDVAVLAGDALLSFAFEHLA 116
Query: 191 VCTKG-VSPARIVRAIAELAKYIGADGLVAGQAE--KDLGIEHLEFIHEHKTXXXXXXXX 247
T VSPAR+VRA+ ELAK IG +GLVAGQ ++G+EHL+FIH HKT
Sbjct: 117 SATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISNVGLEHLKFIHLHKTAALLEASA 176
Query: 248 XXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYP 307
+D E+E+LR FARCIGLLFQVVDDILD+T +ADKLTYP
Sbjct: 177 VLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVT--------------IADKLTYP 222
Query: 308 KLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 353
KL+G+E+S++ A+KLN +A+ QL FD +K PL+ALANYIA RQN
Sbjct: 223 KLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIANRQN 268
>pdb|4F62|A Chain A, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
pdb|4F62|B Chain B, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
Length = 317
Score = 188 bits (477), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 115/295 (38%), Positives = 158/295 (53%), Gaps = 10/295 (3%)
Query: 67 FDFKSYMIQKASTVNQALDAAVSLKDPV-KIHESMRYSLLAGGKRVRPVLCLAACDLVGG 125
+ K + S V+Q L+ +S P ++H +MRYSL GGKR+RP+L A+ LVG
Sbjct: 3 MNLKQFSTYTQSRVDQYLEQQLSDYAPANQLHNAMRYSLFNGGKRIRPMLTYASAQLVGD 62
Query: 126 HESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEXXXXXXXXXXXXXX 185
S+ +A ++E IH SLIHDDLP MDND LRRGKPT H + E
Sbjct: 63 ISSLTDASAAALESIHAYSLIHDDLPAMDNDELRRGKPTCHIQFDEATAILAGDALQTFA 122
Query: 186 FEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQA------EKDLGIEHLEFIHEHKT 239
FE ++ T P ++ I EL G +G++ GQ K++ + LE +H HKT
Sbjct: 123 FELLSNPTSA-QPELAIKLIQELVVASGRNGMITGQMIDLSSENKNISLAELEQMHVHKT 181
Query: 240 XXXXXXXXXXXXXXXXXTDNE-VEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKD 298
E + KL +A IGL FQV DDI+DLT ++ LGKT D
Sbjct: 182 GALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSD 241
Query: 299 LVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 353
A+K TYPKLLG++ +K L +L++ A Q+SEF +K+ PL LANYI R +
Sbjct: 242 AEANKATYPKLLGLDGAKALVVRLHEQAIAQISEFG-DKSQPLTDLANYIIDRNH 295
>pdb|3UCA|A Chain A, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
pdb|3UCA|B Chain B, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
Length = 324
Score = 152 bits (383), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 128/231 (55%), Gaps = 12/231 (5%)
Query: 96 IHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDN 155
+++SM YS+ GGKR+RP+L L + + + A +IEMIHT SLIHDDLPCMDN
Sbjct: 62 LYDSMAYSINVGGKRIRPILMLLSYYIYKSDYKKILTPAMAIEMIHTYSLIHDDLPCMDN 121
Query: 156 DPLRRGKPTNHTIYGEXXXXXXXXXXXXXXFEHIAVCT--KGVSPARIVRAIAELAKYIG 213
D LRRGKPTNH ++GE + + + +G S + + IA+ A G
Sbjct: 122 DDLRRGKPTNHKVFGEAIAVLAGDALLNEAMKILVDYSLEEGKSALKATKIIADAA---G 178
Query: 214 ADGLVAGQA-------EKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRT 266
+DG++ GQ ++++ ++ L+++H KT ++ +++KL
Sbjct: 179 SDGMIGGQIVDIINEDKEEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEG 238
Query: 267 FARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKK 317
F +GL FQ+ DDILD+ ++K+LGK KD ++K Y + G+EE KK
Sbjct: 239 FGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKK 289
>pdb|3TS7|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
pdb|3TS7|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
Length = 324
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 111/300 (37%), Positives = 153/300 (51%), Gaps = 11/300 (3%)
Query: 64 SPTFDFKSYMIQKASTVNQALDAAVSLKD--PVKIHESMRYSLLAGGKRVRPVLCLAACD 121
+P +M V +ALDA + D P ++H++MRYS+L GGKR+RP+L A
Sbjct: 4 NPERSLSDFMRSSQERVERALDARLPAADRMPERLHQAMRYSVLGGGKRMRPLLTYATGQ 63
Query: 122 LVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEXXXXXXXXXX 181
+G + AC++E IH SLIHDDLP MD+D LRRGKPT H Y E
Sbjct: 64 TIGVAADLLDGPACAVEFIHVYSLIHDDLPAMDDDDLRRGKPTCHKAYDEATAILAGDGL 123
Query: 182 XXXXFEHIAVCTKGVSPARIVRAIAE-LAKYIGADGLVAGQA------EKDLGIEHLEFI 234
F +A PA A+ E LAK G G+V GQA K L + LE +
Sbjct: 124 QALAFHVLAQDPSIAVPAENRIAMIETLAKASGPAGMVGGQAIDLASVGKKLDLPGLENM 183
Query: 235 HEHKTXXXXXXXXXXXXXXXXXTDNE-VEKLRTFARCIGLLFQVVDDILDLTKSSKELGK 293
H KT E ++L +A+CIGL FQ+ DDILD ++ LGK
Sbjct: 184 HIRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESDTQTLGK 243
Query: 294 TAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 353
T GKD +K YP LLG+ +K+ A+++++ A + L+ F E + L LA +I RQ+
Sbjct: 244 TRGKDRDHNKPNYPALLGLSGAKEKAEEMHEAALESLAGFGPEADL-LRELARFIIQRQS 302
>pdb|1RTR|A Chain A, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
pdb|1RTR|B Chain B, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
Length = 301
Score = 141 bits (355), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 98/268 (36%), Positives = 140/268 (52%), Gaps = 16/268 (5%)
Query: 80 VNQALDAAV--SLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSI 137
VN L A+ S+ D ++ ESM YSL AGGKR+RPVL L D + + M +A ++
Sbjct: 13 VNNELSVAINKSVMDT-QLEESMLYSLNAGGKRIRPVLLLLTLDSLNTEYELGMKSAIAL 71
Query: 138 EMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEXXXXXXXXXXXXXXFEHIAVCTKGVS 197
EMIHT SLIHDDLP MDND RRGK TNH +YGE FE I+ +
Sbjct: 72 EMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDRLTD 131
Query: 198 PARIVRAIAELAKYIGADGLVAGQA------EKDLGIEHLEFIHEHKTXXXXXXXXXXXX 251
+I + + L+ G G+V GQ + + +E LE IH+ KT
Sbjct: 132 EVKI-KVLQRLSIASGHVGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLTFAVMSAA 190
Query: 252 XXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLG 311
D E L +++ +G++FQ+ DD+LD +LGK G DL +K TY LLG
Sbjct: 191 DIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLG 250
Query: 312 IEESKKLADKL--NKDAQ-QQLSEFDQE 336
+ ++ DKL ++DA +L++ D++
Sbjct: 251 KDGAE---DKLTYHRDAAVDELTQIDEQ 275
>pdb|3P41|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
And Isoprenyl Pyrophosphate
Length = 303
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 101/275 (36%), Positives = 140/275 (50%), Gaps = 23/275 (8%)
Query: 94 VKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCM 153
+++E+ RYS+ GGKRVRP+L AAC+ +GG A AAC++E+IH SL+HDDLP
Sbjct: 37 ARLYEAXRYSVXNGGKRVRPLLAYAACEALGGKPEQANGAACAVELIHAYSLVHDDLPAX 96
Query: 154 DNDPLRRGKPTNHTIYGEXXXXXXXXXXXXXXFEHIAVCTKGVSPARI-VRAIAELAKY- 211
D+D LRRG+PT H + E F + + A I +R + LA+
Sbjct: 97 DDDDLRRGQPTTHKAFDEAXAILAGDGLQSLAFSALLDPALSDASAEIRLRXVTTLAQAA 156
Query: 212 ------------IGADGLVAGQAEKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTD- 258
+G+ GL Q + LE+ H HKT +
Sbjct: 157 GPAGXVGGQAIDLGSVGLKLDQ-------QALEYXHRHKTGALIEASVILGALASGRAEK 209
Query: 259 NEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKL 318
E++ L+T+A+ IGL FQV DDILD+ + LGK G D+ DK TYP LLG+ +K+
Sbjct: 210 GELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEY 269
Query: 319 ADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 353
A +L A L FD A PL LA YI R++
Sbjct: 270 ALELRDQALHALRPFD-AAAEPLRELARYIVERRS 303
>pdb|3LJI|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5
pdb|3LSN|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
Length = 304
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 100/275 (36%), Positives = 139/275 (50%), Gaps = 23/275 (8%)
Query: 94 VKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCM 153
+++E+ RYS+ GGKRVRP+L AAC+ +GG A AAC++E+IH SL+HDDLP
Sbjct: 30 ARLYEAXRYSVXNGGKRVRPLLAYAACEALGGKPEQANGAACAVELIHAYSLVHDDLPAX 89
Query: 154 DNDPLRRGKPTNHTIYGEXXXXXXXXXXXXXXFEHIAVCTKGVSPARI-VRAIAELAKY- 211
D+D LRRG+PT H + E F + + A I +R + LA+
Sbjct: 90 DDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDPALSDASAEIRLRXVTTLAQAA 149
Query: 212 ------------IGADGLVAGQAEKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTD- 258
+G+ GL Q + LE+ H HKT +
Sbjct: 150 GPAGXVGGQAIDLGSVGLKLDQ-------QALEYXHRHKTGALIEASVILGALASGRAEK 202
Query: 259 NEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKL 318
E++ L+T+A+ IGL FQV DDILD+ + LGK G D+ DK TYP LLG+ +K+
Sbjct: 203 GELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEY 262
Query: 319 ADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 353
A +L A L FD A PL LA YI R++
Sbjct: 263 ALELRDQALHALRPFD-AAAEPLRELARYIVERRS 296
>pdb|3M9U|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3PDE|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
Length = 309
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 120/241 (49%), Gaps = 17/241 (7%)
Query: 95 KIHESMRYSLLAGGKRVRPVLCLAACDLVGGH---ESMAMPAACSIEMIHTMSLIHDDLP 151
++ +M YS+LAGGKR+RP+L +A +G E P ++E++HT SLIHDDLP
Sbjct: 35 QLAAAMTYSVLAGGKRLRPLLTVATMQSLGVTFVPERHWRPV-MALELLHTYSLIHDDLP 93
Query: 152 CMDNDPLRRGKPTNHTIYGEXXXXXXXXXXXXXXFEHI-AVCTKGVSPARIVRAIAELAK 210
MDND LRRG+PTNH +G F+ + A A +V+A+A A
Sbjct: 94 AMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTATDLPATMQAALVQALATAA- 152
Query: 211 YIGADGLVAGQAEKDLGIEH-------LEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEK 263
G G+VAGQA KD+ EH L +H+ KT + +
Sbjct: 153 --GPSGMVAGQA-KDIQSEHVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPA 209
Query: 264 LRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLG-IEESKKLADKL 322
FA GL FQ+ DDILD+ S E+GK KD K TYP LG I ++ L D +
Sbjct: 210 YLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALIDTI 269
Query: 323 N 323
+
Sbjct: 270 H 270
>pdb|3Q1O|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
Length = 310
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 122/253 (48%), Gaps = 21/253 (8%)
Query: 104 LLAGGKRVRPVLCLAA-CDLVG-----GHESMAMPAACSIEMIHTMSLIHDDLPCMDNDP 157
+L GGKR RP L LA C LVG ++ A SIE +HT SLIHDDLPCMDN
Sbjct: 51 VLNGGKRFRPKLFLAVLCALVGQKDYSNQQTEYFKIALSIECLHTYSLIHDDLPCMDNAA 110
Query: 158 LRRGKPTNHTIYGEXXXXXXXXXXXXXXFEHIAVCTKGVSPARIVRAIAELAKYIGADGL 217
LRR PT H Y E FE ++ + IV I L+ G G+
Sbjct: 111 LRRNHPTLHAKYDETTAVLIGDALNTYSFELLS--NALLESHIIVELIKILSANGGIKGM 168
Query: 218 VAGQA------EKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEK-LRTFARC 270
+ GQA L +E L F+HEHKT D E+ K L+ F
Sbjct: 169 ILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLK 228
Query: 271 IGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQL 330
+GL FQV+DDI+D+T+ +E GKT D + K ++ LLG+E + A L + L
Sbjct: 229 MGLCFQVLDDIIDVTQDEEESGKTTHLD--SAKNSFVNLLGLERANNYAQTLKTEV---L 283
Query: 331 SEFDQEK-AVPLI 342
++ D K A PL+
Sbjct: 284 NDLDALKPAYPLL 296
>pdb|3LLW|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
Length = 311
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 122/253 (48%), Gaps = 21/253 (8%)
Query: 104 LLAGGKRVRPVLCLAA-CDLVG-----GHESMAMPAACSIEMIHTMSLIHDDLPCMDNDP 157
+L GGKR RP L LA C LVG ++ A SIE +HT SLIHDDLPCMDN
Sbjct: 44 VLNGGKRFRPKLFLAVLCALVGQKDYSNQQTEYFKIALSIECLHTYSLIHDDLPCMDNAA 103
Query: 158 LRRGKPTNHTIYGEXXXXXXXXXXXXXXFEHIAVCTKGVSPARIVRAIAELAKYIGADGL 217
LRR PT H Y E FE ++ + IV I L+ G G+
Sbjct: 104 LRRNHPTLHAKYDETTAVLIGDALNTYSFELLS--NALLESHIIVELIKILSANGGIKGM 161
Query: 218 VAGQA------EKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEK-LRTFARC 270
+ GQA L +E L F+HEHKT D E+ K L+ F
Sbjct: 162 ILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLK 221
Query: 271 IGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQL 330
+GL FQV+DDI+D+T+ +E GKT D + K ++ LLG+E + A L + L
Sbjct: 222 MGLCFQVLDDIIDVTQDEEESGKTTHLD--SAKNSFVNLLGLERANNYAQTLKTEV---L 276
Query: 331 SEFDQEK-AVPLI 342
++ D K A PL+
Sbjct: 277 NDLDALKPAYPLL 289
>pdb|3P8R|A Chain A, Crystal Structure Of Polyprenyl Synthase From Vibrio
Cholerae
Length = 302
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 110/230 (47%), Gaps = 8/230 (3%)
Query: 98 ESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDP 157
E+MRY LL GGKR RP L ++G S A ++E IH SLIHDDLP MD+D
Sbjct: 40 EAMRYGLLLGGKRARPYLVYITGQMLGCELSDLDTPASAVECIHAYSLIHDDLPAMDDDE 99
Query: 158 LRRGKPTNHTIYGEXXXXXXXXXXXXXXFEHIAVCT-KGVSPARIVRAIAELAKYIGADG 216
LRRGKPT H + E F +A + V + LA+ GA G
Sbjct: 100 LRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQALAEASGAQG 159
Query: 217 LVAGQA------EKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNE-VEKLRTFAR 269
+ GQA + + +E LE IH +KT + L +A
Sbjct: 160 MCLGQALDLAAENRLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAE 219
Query: 270 CIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLA 319
+GL FQV DDILD+ ++ LGK G D +K TYP LLG+E +++ A
Sbjct: 220 AVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKA 269
>pdb|3P8L|A Chain A, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
pdb|3P8L|B Chain B, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
Length = 302
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 120/229 (52%), Gaps = 9/229 (3%)
Query: 95 KIHESMRYSLLAGGKRVRPVLCLAACDLVGGH-ESMAMPAACSIEMIHTMSLIHDDLPCM 153
++ E+M YS+ AGGKR+RP+L L E+ A S+EMIHT SLIHDDLP M
Sbjct: 37 RLKEAMLYSIHAGGKRLRPLLVLTTVAAFQKEMETQDYQVAASLEMIHTYSLIHDDLPAM 96
Query: 154 DNDPLRRGKPTNHTIYGEXXXXXXXXXXXXXXFEHIAVCTKGVSPARIVRAIAELAKYIG 213
D+D LRRGKPTNH ++GE F+ +++ + V + +LAK G
Sbjct: 97 DDDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLSLSQL--GLSEKVLLMQQLAKAAG 154
Query: 214 ADGLVAGQ-----AEK-DLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTF 267
G+V+GQ EK L +E L +HE KT T+ + L F
Sbjct: 155 NQGMVSGQMGDIEGEKVSLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQF 214
Query: 268 ARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESK 316
A GL FQ+ DD+LD T + +LGK G+D +K TYP LLGI +K
Sbjct: 215 AHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAK 263
>pdb|2FOR|A Chain A, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
pdb|2FOR|B Chain B, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
Length = 323
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 105/303 (34%), Positives = 139/303 (45%), Gaps = 18/303 (5%)
Query: 64 SPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIH-----ESMRYSLLAGGKRVRPVLCLA 118
S DF + NQAL ++ P+ E+M+Y L GGKR+RP L A
Sbjct: 22 SNAMDFPQQLEACVKQANQALSRFIA---PLPFQNTPVVETMQYGALLGGKRLRPFLVYA 78
Query: 119 ACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEXXXXXXX 178
+ G + A ++E IH SLIHDDLP MD+D LRRG PT H +GE
Sbjct: 79 TGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAG 138
Query: 179 XXXXXXXFEHIAVCTK-GVSPARIVRAIAELAKYIGADGLVAGQA------EKDLGIEHL 231
F ++ VS + I+ELA G G+ GQA K + ++ L
Sbjct: 139 DALQTLAFSILSDANMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDAL 198
Query: 232 EFIHEHKTXXXXXXXXXXXXXXXXXTDNE-VEKLRTFARCIGLLFQVVDDILDLTKSSKE 290
E IH HKT + L +A IGL FQV DDILD+ +
Sbjct: 199 ERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTAT 258
Query: 291 LGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEK--AVPLIALANYI 348
LGK G D K TYP LLG+E+++K A L DA+Q L + ++ L ALA+YI
Sbjct: 259 LGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQALKQLAEQSLDTSALEALADYI 318
Query: 349 AYR 351
R
Sbjct: 319 IQR 321
>pdb|1RQJ|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
pdb|1RQJ|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
Length = 299
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 97/264 (36%), Positives = 127/264 (48%), Gaps = 10/264 (3%)
Query: 98 ESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDP 157
E+M+Y L GGKR+RP L A + G + A ++E IH SLIHDDLP MD+D
Sbjct: 34 ETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDD 93
Query: 158 LRRGKPTNHTIYGEXXXXXXXXXXXXXXFEHIAVC-TKGVSPARIVRAIAELAKYIGADG 216
LRRG PT H +GE F ++ VS + I+ELA G G
Sbjct: 94 LRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAG 153
Query: 217 LVAGQA------EKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNE-VEKLRTFAR 269
+ GQA K + ++ LE IH HKT + L +A
Sbjct: 154 MCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAE 213
Query: 270 CIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQ 329
IGL FQV DDILD+ + LGK G D K TYP LLG+E+++K A L DA+Q
Sbjct: 214 SIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQS 273
Query: 330 LSEFDQEK--AVPLIALANYIAYR 351
L + ++ L ALA+YI R
Sbjct: 274 LKQLAEQSLDTSALEALADYIIQR 297
>pdb|1RQI|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
pdb|1RQI|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
Length = 300
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 97/264 (36%), Positives = 127/264 (48%), Gaps = 10/264 (3%)
Query: 98 ESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDP 157
E+M+Y L GGKR+RP L A + G + A ++E IH SLIHDDLP MD+D
Sbjct: 35 ETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDD 94
Query: 158 LRRGKPTNHTIYGEXXXXXXXXXXXXXXFEHIAVC-TKGVSPARIVRAIAELAKYIGADG 216
LRRG PT H +GE F ++ VS + I+ELA G G
Sbjct: 95 LRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAG 154
Query: 217 LVAGQA------EKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNE-VEKLRTFAR 269
+ GQA K + ++ LE IH HKT + L +A
Sbjct: 155 MCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAE 214
Query: 270 CIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQ 329
IGL FQV DDILD+ + LGK G D K TYP LLG+E+++K A L DA+Q
Sbjct: 215 SIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQS 274
Query: 330 LSEFDQEK--AVPLIALANYIAYR 351
L + ++ L ALA+YI R
Sbjct: 275 LKQLAEQSLDTSALEALADYIIQR 298
>pdb|1WY0|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate
Synthetase From Pyrococcus Horikoshii Ot3
Length = 342
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 118/239 (49%), Gaps = 15/239 (6%)
Query: 75 QKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAA 134
+KA +++ + + KDP ++E+ R+ LAGGKRVRP + L + + VGG A+ A
Sbjct: 13 EKAKLIDEKIFELIPEKDPRVLYEAARHYPLAGGKRVRPFVVLTSTEAVGGDPLRAIYPA 72
Query: 135 CSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEXXXXXXXXXXXXXXFEHIAVCTK 194
+IE+IH SL+HDD+ MD D RRGKPT H I+G FE AV
Sbjct: 73 VAIELIHNYSLVHDDI--MDMDETRRGKPTVHRIWGVNMAILAGDLLFSKAFE--AVARA 128
Query: 195 GVSPARIVRAIAELAKYIGADGLVAGQAEKDLGIEHL------EFIHEHKTXXXXXXXXX 248
+ P + R + + K ++ L GQA +DL E E++
Sbjct: 129 EIPPEKKARVLEVIVK--ASNELCEGQA-RDLEFEKKSTVTIEEYMEMISGKTGALFEAS 185
Query: 249 XXXXXXXXTDNE--VEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLT 305
TDNE ++ L ++ R +G+ FQ+ DD+LDL K+LGK G D+ K T
Sbjct: 186 AKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRKGKKT 244
>pdb|3LOM|A Chain A, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
pdb|3LOM|B Chain B, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
Length = 313
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 124/268 (46%), Gaps = 10/268 (3%)
Query: 95 KIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMD 154
+I ++ Y+L +GGKR+RP+L A DL+ + + A ++E+ H SLIHDDLP MD
Sbjct: 37 QIRSALHYALFSGGKRIRPILVYLAGDLIDVDQGVLDIIAAALELTHCYSLIHDDLPAMD 96
Query: 155 NDPLRRGKPTNHTIYGEXXXXXXXXXXXXXXFEHIAVCTKGVSPARIVRAIAE-LAKYIG 213
ND LRRGKP+ H + E E + + + PA V AI + L G
Sbjct: 97 NDDLRRGKPSCHKAFDEATAILVGDGMQALAIEVLLMRLSPLLPAAQVVAITQVLVNASG 156
Query: 214 ADGLVAGQ-------AEKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEK-LR 265
G+V+GQ A+ + E L IH KT +++ LR
Sbjct: 157 ISGMVSGQSLDLSELAKSSVTEEQLREIHLLKTGKLILACFEMVLAAQHEVSEQIKSALR 216
Query: 266 TFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKD 325
T+ + IGL+FQ+ DD LDL ++ LGK D K T+ L ++ ++ +
Sbjct: 217 TYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAVHYQI 276
Query: 326 AQQQLSEFDQEKAVPLIALANYIAYRQN 353
A L F KA LI L + R N
Sbjct: 277 AMDSLRLFG-SKAAALIELTKQLQNRSN 303
>pdb|3NPK|A Chain A, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
pdb|3NPK|B Chain B, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
Length = 291
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 120/254 (47%), Gaps = 19/254 (7%)
Query: 96 IHESMRYSLLAGGKRVRPVLCLAAC-----DLVGGHESMAMPAACSIEMIHTMSLIHDDL 150
+E++ L AGGK R L L+ +L+ + A+ A ++E IHT SLIHDDL
Sbjct: 27 FNEALALXLKAGGKHFRAQLLLSVVQSNKPELL----NQALDVALALEFIHTYSLIHDDL 82
Query: 151 PCMDNDPLRRGKPTNHTIYGEXXXXXXXXXXXXXXFEHIAVCTKGVSPARIVRAIAELAK 210
P DN RRG PT H Y E F + + + ++ I LA
Sbjct: 83 PAXDNADFRRGIPTLHKSYDETTAILVGDALNTEAF--LVLSHAHLKDEIKIKLIKTLAF 140
Query: 211 YIGADGLVAGQA------EKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKL 264
G +G V GQA +K L + LEF+H HKT + E ++
Sbjct: 141 NAGLNGXVIGQAIDCFFEDKRLSLNELEFLHTHKTARLIAAALKXGCEICELNNEESNQI 200
Query: 265 RTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNK 324
+GL+FQ+ DDI+D+T S ++ GK D+ K ++ LLG+E++ K + L
Sbjct: 201 YKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNNDI--HKNSFVNLLGLEQAIKTKENLLN 258
Query: 325 DAQQQLSEFDQEKA 338
+ +Q L + +++ A
Sbjct: 259 ECEQDLEKLNEKLA 272
>pdb|3LVS|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
pdb|3LVS|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
Length = 298
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 122/259 (47%), Gaps = 13/259 (5%)
Query: 69 FKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHES 128
F + + V A+ AA+ + ++M Y+ GGKR+R L + + + G +
Sbjct: 4 FSERLKEIQDAVETAMAAAIGRLPAGDLRDAMAYAA-QGGKRLRAFLAIESAAIHGISMA 62
Query: 129 MAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEXXXXXXXXXXXXXXFEH 188
AMPAA ++E +H SL+HDD+PCMDND LRRG PT H + + FE
Sbjct: 63 QAMPAALAVEALHAYSLVHDDMPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFE- 121
Query: 189 IAVCTKGV--SPARIVRAIAELAKYIGADGLVAGQAEKDLGIE------HLEFIHEHKTX 240
+CT V S V +A LA+ GA+G+V GQA D+ E L+ I +
Sbjct: 122 --LCTDPVLGSAENRVALVAALAQASGAEGMVYGQA-LDIAAETAAVPLTLDEIIRLQAG 178
Query: 241 XXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLV 300
+ L +A +GL FQ+ DDILD+ + + GK GKD
Sbjct: 179 KTGALISFAAQAGAILAGADRGPLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAE 238
Query: 301 ADKLTYPKLLGIEESKKLA 319
A K T+ LLG+ +K A
Sbjct: 239 AHKATFVSLLGLAGAKSRA 257
>pdb|2H8O|A Chain A, The 1.6a Crystal Structure Of The Geranyltransferase From
Agrobacterium Tumefaciens
Length = 335
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 94/323 (29%), Positives = 147/323 (45%), Gaps = 23/323 (7%)
Query: 41 ASQRPRRPVSISAVQT-LEENPAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHES 99
A QR R ++ +T L EN A + +++ + ++ + P + E+
Sbjct: 26 ACQRARMDAQMTNFETRLRENAAKTEAL--LGHLLSGEARADE-------ITRPQNLLEA 76
Query: 100 MRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLR 159
MR+ +L GGKR+RP L + + L+GG + ++E +H SL+HDDLP MD+D LR
Sbjct: 77 MRHGVLNGGKRLRPFLVIESVALLGGDAEAGLHVGAALECLHCYSLVHDDLPAMDDDDLR 136
Query: 160 RGKPTNHTIYGEXXXXXXXXXXXXXXFEHIAVCTKGVSPARIVRAIAELAKYIGA----- 214
RG+PT H + E F+ IA ++ R + LA+ G
Sbjct: 137 RGQPTVHRKFDEATAILAGDSLLTLAFDIIASDDNPLAAERKAALVISLARAAGIGGMAG 196
Query: 215 ----DGLVAGQAEKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARC 270
D +A + GI L+ + KT E ++LR F
Sbjct: 197 GQALDLAAEKKAPDEDGIITLQAM---KTGALLRFACEAGAIIAGSNQAERQRLRLFGEK 253
Query: 271 IGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQL 330
IGL FQ+ DD+LDLT + +GK GKD K T L G +++ + +A + L
Sbjct: 254 IGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQVAEASELL 313
Query: 331 SEFDQEKAVPLIALANYIAYRQN 353
+ + EKA LIA A +IA R++
Sbjct: 314 APYG-EKAAILIAAARFIAERKS 335
>pdb|3OYR|A Chain A, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
pdb|3OYR|B Chain B, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
Length = 345
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 94/213 (44%), Gaps = 10/213 (4%)
Query: 106 AGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTN 165
AGGKR+RP++ +AA L G A ++E IHT +L+HDD +D LRRGK
Sbjct: 63 AGGKRLRPLMTVAAARLAGADNDHFQKLAAAVEFIHTATLLHDD--VVDGSQLRRGKVAA 120
Query: 166 HTIYGEXXXXXXXXXXXXXXFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQAEKD 225
H I+G FE + V T + I +A ++ I ++ D
Sbjct: 121 HLIWGGAQSVLVGDFLFARAFE-LMVETNSMKALEI---LARASRVIAEGEVLQLMRSHD 176
Query: 226 LGIE---HLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDIL 282
L + +LE I + KT + E LR + +GL FQ+ DD L
Sbjct: 177 LNLSQAVYLEII-QAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDAL 235
Query: 283 DLTKSSKELGKTAGKDLVADKLTYPKLLGIEES 315
D +++ LGK AG D K T P LL I S
Sbjct: 236 DYGGATETLGKNAGDDFREGKATLPLLLAIARS 268
>pdb|2FTZ|A Chain A, Crystal Structure Of Geranyltranstransferase (Ec 2.5.1.10)
(Tm0161) From Thermotoga Maritima At 1.90 A Resolution
Length = 284
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 100/230 (43%), Gaps = 18/230 (7%)
Query: 97 HESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDND 156
E+M YS GG R+RP+L L + +G E + A ++E+ HT SLIHDDLP +DN
Sbjct: 35 EEAMLYSATVGGXRIRPLLVLTLGEDLGVEEEXLLDVAVAVELFHTASLIHDDLPPIDNA 94
Query: 157 PLRRGKPTNHTIYGEXXXXXXXXXXXXXXFEHIAVCTKGVSPARIVRAIAELAKYIGADG 216
RRG P+ H YGE F I+ + + I +E A
Sbjct: 95 DFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISX----IGNSXIFEEFSETAYX----- 145
Query: 217 LVAGQAEKDLGIEHL------EFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARC 270
L+ G+A D+ E E + + +
Sbjct: 146 LLLGEA-MDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXDHTXMXLLGEX 204
Query: 271 IGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLAD 320
G+ FQ+ DD+ D+ S +++GK GKD + +T +GI+ ++++AD
Sbjct: 205 FGVAFQIYDDLXDILGSFEKVGKDLGKD--TEXVTLVXXVGIQXAREMAD 252
>pdb|3MZV|A Chain A, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
pdb|3MZV|B Chain B, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
Length = 341
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 124/290 (42%), Gaps = 14/290 (4%)
Query: 59 ENPAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLA 118
++ A P + + + VN + +S + +I E + + AGGKR+RP+L LA
Sbjct: 4 DDKATKPHDRLAQALAEDMAAVNALIRERMSSEHAPRIPEVTAHLIEAGGKRLRPMLTLA 63
Query: 119 ACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEXXXXXXX 178
A LVG + A ++E IHT +L+HDD +D RRG+PT + ++
Sbjct: 64 AARLVGYGGPFHVHLAATVEFIHTATLLHDD--VVDESRQRRGRPTANLLWDNKSSVLVG 121
Query: 179 XXXXXXXFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQAEKDLGIEHLEFIH--E 236
F+ R++ +A + I ++ A ++L ++
Sbjct: 122 DYLFARSFQ----LMTDTGNMRVMEILANASAVIAEGEVLQLTAAQNLATTEDIYLRVIR 177
Query: 237 HKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAG 296
KT +++V+ L + +G+ FQ+VDD+LD S E+GK G
Sbjct: 178 GKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTG 237
Query: 297 KDLVADKLTYPKL----LGIEESKKLADKLNKDAQQQLSEFDQEKAVPLI 342
D KLT P + L E + ++ + QQ + D E A+ L+
Sbjct: 238 DDFRERKLTMPVIKAVALADEAERAFWKRVIEKGDQQ--DGDLEHAMALM 285
>pdb|4DHD|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis
pdb|4GP1|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp
pdb|4GP2|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
pdb|4GP2|B Chain B, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
Length = 358
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 133/301 (44%), Gaps = 35/301 (11%)
Query: 66 TFDFKSYMIQK-ASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVG 124
D S + QK + V +AL +S+ E++ Y + GGKR+RP+L LAA + V
Sbjct: 2 VMDVVSRLHQKYGAEVEKALVRYLSIGLAEDFREAVLYQVKTGGKRLRPLLTLAAAEAVS 61
Query: 125 GHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEXXXXXXXXXXXXX 184
G A+PAA +E+IH SLI+DD+ +D +RRG PT +G+
Sbjct: 62 GQWRPALPAAAIVELIHNYSLIYDDI--IDRGDVRRGLPTVRKAFGDNAAILVGIWYREA 119
Query: 185 XFEHIAVCTKGVSPARIVRAIAELAKYIGA----DGLV--AGQAE--------KDLGIEH 230
E + K P + +AE+ K I D L AG+++ +++ ++
Sbjct: 120 IEEAVLDTPK---PTLFAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDD 176
Query: 231 LEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKE 290
+ KT E F G+ FQ++DD+LD+ K+
Sbjct: 177 YIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDIYGDPKK 236
Query: 291 LGKTAGKDL---------VADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPL 341
GK GKD+ VA L++ LG E ++L + L A++ + E D +AV L
Sbjct: 237 FGKEIGKDIKEHKRGNAVVAVALSH---LGEGERRRLLEIL---AREVVEEADVREAVAL 290
Query: 342 I 342
+
Sbjct: 291 L 291
>pdb|3AQB|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQB|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQC|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
pdb|3AQC|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
Length = 325
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 97/230 (42%), Gaps = 6/230 (2%)
Query: 92 DPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLP 151
D I+++ + L +GGKRVRP+ L + L + + A S+E++H SL+HDD
Sbjct: 28 DSETINKAAHHILSSGGKRVRPMFVLLSGFLNDTQKDDLIRTAVSLELVHMASLVHDDY- 86
Query: 152 CMDNDPLRRGKPTNHTIYGEXXXXXXXXXXXXXXFEHIAVCTKGVSPARIVRAIAELAKY 211
+DN +RRG + H + + ++IA + I E+
Sbjct: 87 -IDNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATINNSKFHQIFSKTILEVC-- 143
Query: 212 IGADGLVAGQAEKDLGIE-HLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARC 270
G +A + + +L I+ KT + ++ F C
Sbjct: 144 FGEFDQMADRFNYPVSFTAYLRRINR-KTAILIEASCHLGALSSQLDEQSTYHIKQFGHC 202
Query: 271 IGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLAD 320
IG+ +Q++DDILD T LGK G D+ +TYP + I K+ D
Sbjct: 203 IGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAIANLKEQDD 252
>pdb|3LMD|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Atcc 13032
pdb|3Q2Q|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Calcium
And Isoprenyl Diphosphate
Length = 360
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 94/226 (41%), Gaps = 23/226 (10%)
Query: 106 AGGKRVRPVLCLAACDLVGGHESMA---MPAACSIEMIHTMSLIHDDLPCMDNDPLRRGK 162
AGGKR RP+ L A + G + ++ + AA +E+ H +L HDD MD +RRG
Sbjct: 72 AGGKRFRPMFALLASEF--GEKPLSENVIKAAVVVEITHLATLYHDD--VMDEASMRRGV 127
Query: 163 PTNHTIYGEXXXXXXXXXXXXXXFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQA 222
P+ + + + + G+ +A A+ G LV GQ
Sbjct: 128 PSANARWDNSVAILAG--------DILLAHASGLMSQLGTDTVAHFAETFGE--LVTGQM 177
Query: 223 EKDLG------IEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQ 276
+ +G IEH + KT ++ L+ F +G++FQ
Sbjct: 178 RETVGPRDTDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQ 237
Query: 277 VVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKL 322
+VDDI+D+ + E GKT G DL T P L + E + +L
Sbjct: 238 IVDDIIDIFSETHESGKTPGTDLREGVFTLPVLYALREDTPVGAEL 283
>pdb|3RMG|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
pdb|3RMG|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
Length = 334
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 109/269 (40%), Gaps = 25/269 (9%)
Query: 50 SISAVQTLEENPAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGK 109
SIS ++T P + DFK+ S N LD+ ++ H R GK
Sbjct: 5 SISLIKT----PIEAELEDFKALFDTPLSDSNALLDSVIT-------HIRKR-----NGK 48
Query: 110 RVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIY 169
+RP+L L L G + AA S+E++HT SL+HDD+ +D RRG+ + + I+
Sbjct: 49 MMRPILVLLVARLYGAVTPATLHAAVSLELLHTASLVHDDV--VDESTERRGQLSVNAIF 106
Query: 170 GEXXXXXXXXXXXXXXFEHIAVCTKGVSPARIVRAIAELAKYIGADGL--VAGQAEKDLG 227
H + + I+R ++ L + + L ++ +
Sbjct: 107 NNKVSVLAGDYLLATSLVH----AEQTNNYEIIRLVSSLGQKLAEGELLQLSNVSNHSFS 162
Query: 228 IEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKS 287
E + KT + EV R IG+ FQ+ DDI D
Sbjct: 163 EEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYF-D 221
Query: 288 SKELGKTAGKDLVADKLTYPKLLGIEESK 316
SK++GK G D++ KLT P L + +K
Sbjct: 222 SKKIGKPTGNDMLEGKLTLPALYALNTTK 250
>pdb|3NF2|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Streptomyces Coelicolor A3(2)
Length = 352
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 106/259 (40%), Gaps = 22/259 (8%)
Query: 107 GGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNH 166
GGK VRP L + + ++ G + +P A ++E++H SL+HDDL MD D RR + T
Sbjct: 53 GGKAVRPALAVLSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDL--MDGDEQRRHRDTVW 110
Query: 167 TIYGEXXXXXXXXXXXXXXFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQAEKDL 226
++G E + + V R R + + ++ L+ GQA+ D+
Sbjct: 111 KVHGPAQAILVGDALFALANE-VLLELGTVEAGRATRRLTKASR-----SLIDGQAQ-DI 163
Query: 227 GIEHLEFI--------HEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVV 278
EH + + +KT + + L + +GL FQ V
Sbjct: 164 SYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAV 223
Query: 279 DDILDLTKSSKELGKTAGKDLVADKLTYPKL----LGIEESKKLADKLNKDAQ-QQLSEF 333
DD+L + GK DL K + P + G S++L + L DA+ + F
Sbjct: 224 DDLLGIWGDPDATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANF 283
Query: 334 DQEKAVPLIALANYIAYRQ 352
+E+ AL R+
Sbjct: 284 SEEEFAARAALIEEAGGRE 302
>pdb|3M0G|A Chain A, Crystal Structure Of Putative Farnesyl Diphosphate
Synthase From Rhodobacter Capsulatus
pdb|3M0G|B Chain B, Crystal Structure Of Putative Farnesyl Diphosphate
Synthase From Rhodobacter Capsulatus
Length = 297
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 103/221 (46%), Gaps = 12/221 (5%)
Query: 107 GGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNH 166
GGKR+R L + + + G + A PAA ++E +H SL+HDD PC DND LRRG PT H
Sbjct: 40 GGKRLRAFLAIESAAIHGISXAQAXPAALAVEALHAYSLVHDDXPCXDNDDLRRGLPTVH 99
Query: 167 TIYGEXXXXXXXXXXXXXXFEHIAVCTKGV--SPARIVRAIAELAKYIGADGLVAGQAEK 224
+ + FE +CT V S V +A LA+ GA+G V GQA
Sbjct: 100 KKWDDATAVLAGDALQTLAFE---LCTDPVLGSAENRVALVAALAQASGAEGXVYGQA-L 155
Query: 225 DLGIE------HLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVV 278
D+ E L+ I + + L +A +GL FQ+
Sbjct: 156 DIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRGPLTAYATALGLAFQIA 215
Query: 279 DDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLA 319
DDILD+ + + GK GKD A K T+ LLG+ +K A
Sbjct: 216 DDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRA 256
>pdb|3QKC|B Chain B, Crystal Structure Of Geranyl Diphosphate Synthase Small
Subunit From Antirrhinum Majus
pdb|3QKC|A Chain A, Crystal Structure Of Geranyl Diphosphate Synthase Small
Subunit From Antirrhinum Majus
Length = 273
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 109/247 (44%), Gaps = 29/247 (11%)
Query: 70 KSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESM 129
++Y S + L A+ ++ P + E M + A + LC+AAC+LVGG S
Sbjct: 7 QTYRATIESDIESYLKKAIPIRAPESVFEPMHHLTFAAPRTSASALCVAACELVGGDRSD 66
Query: 130 AMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGK------PTNHTIYGEXXXXXXXXXXXX 183
AM AA ++ ++H + H++LP D P+ + + P + G+
Sbjct: 67 AMAAAAAVHLMHVAAYTHENLPLTDG-PMSKSEIQHKFDPNIELLTGDGIIPFGLELMAR 125
Query: 184 XXFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQAEKDLGIEHL------EFIHEH 237
++ +P RI+RAI EL + +G++G+V GQ +LG+ L E++ +
Sbjct: 126 ------SMDPTRNNPDRILRAIIELTRVMGSEGIVEGQYH-ELGLNQLNDLELIEYVCKK 178
Query: 238 KTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSS-----KELG 292
K ++++EKLR F GL V +L +S KEL
Sbjct: 179 KEGTLHACGAACGAILGGCDEDKIEKLRRF----GLYVGTVQGLLGKNRSGFEGRIKELK 234
Query: 293 KTAGKDL 299
+ A K+L
Sbjct: 235 ELAVKEL 241
>pdb|3KRA|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRA|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRC|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRC|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRF|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRF|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRO|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRO|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRP|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3KRP|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
Length = 274
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 114/265 (43%), Gaps = 26/265 (9%)
Query: 69 FKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHES 128
+ Y + + + L +++++ P + M + A LCLAAC+LVGG S
Sbjct: 1 MQPYWAAIEADIERYLKKSITIRPPETVFGPMHHLTFAAPATAASTLCLAACELVGGDRS 60
Query: 129 MAMPAACSIEMIHTMSLIHDDLPCMDND-PLRRGKPTNHTIYGEXXXXXXXXXXXXXXFE 187
AM AA +I ++H + +H+ LP D P+ KP YG FE
Sbjct: 61 QAMAAAAAIHLVHAAAYVHEHLPLTDGSRPVS--KPAIQHKYGPNVELLTGDGIVPFGFE 118
Query: 188 HIAVCT---KGVSPARIVRAIAELAKYIGADGLVAGQ------AEKDLGIEHLEFIHEHK 238
+A + P RI+R I E+++ G +G+++G + + ++ +E++ + K
Sbjct: 119 LLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISGLHREEEIVDGNTSLDFIEYVCKKK 178
Query: 239 TXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLL---------FQVVDD-ILDLTK-- 286
+ E++KLR F G L Q++D+ I+ K
Sbjct: 179 YGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMKNSHQLIDENIIGKLKEL 238
Query: 287 SSKELGKTAGK--DLVADKLTYPKL 309
+ +ELG GK +L++ + P L
Sbjct: 239 ALEELGGFHGKNAELMSSLVAEPSL 263
>pdb|3OAB|B Chain B, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAB|C Chain C, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|B Chain B, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|C Chain C, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
Length = 264
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 110/264 (41%), Gaps = 34/264 (12%)
Query: 69 FKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHES 128
+ Y + + + L +++++ P + M + A LCLAAC+LVGG S
Sbjct: 1 MQPYWAAIEADIERYLKKSITIRPPETVFGPMHHLTFAAPATAASTLCLAACELVGGDRS 60
Query: 129 MAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEXXXXXXXXXXXXXXFEH 188
AM AA +I ++H + +H+ LP P YG FE
Sbjct: 61 QAMAAAAAIHLVHAAAYVHEHLP-----------PAIQHKYGPNVELLTGDGIVPFGFEL 109
Query: 189 IAVCT---KGVSPARIVRAIAELAKYIGADGLVAGQ------AEKDLGIEHLEFIHEHKT 239
+A + P RI+R I E+++ G +G+++G + + ++ +E++ + K
Sbjct: 110 LAGSVDPARTDDPDRILRVIIEISRAGGPEGMISGLHREEEIVDGNTSLDFIEYVCKKKY 169
Query: 240 XXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLL---------FQVVDD-ILDLTK--S 287
+ E++KLR F G L Q++D+ I+ K +
Sbjct: 170 GEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMKNSHQLIDENIIGKLKELA 229
Query: 288 SKELGKTAGK--DLVADKLTYPKL 309
+ELG GK +L++ + P L
Sbjct: 230 LEELGGFHGKNAELMSSLVAEPSL 253
>pdb|3IPI|A Chain A, Crystal Structure Of A Geranyltranstransferase From The
Methanosarcina Mazei
Length = 295
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 80 VNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEM 139
V + +++L + + + + + +GGKR+RP++ L ++ G S ++ AA ++E
Sbjct: 14 VEAGIKESITLIEDPGLKKXVEHVCHSGGKRIRPIILLLVSEICSGSYSRSLNAALAVEX 73
Query: 140 IHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 170
H+ SLIHDDL +D +RR P+ +G
Sbjct: 74 XHSASLIHDDL--LDQGLVRRNLPSAPEKFG 102
>pdb|3APZ|A Chain A, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
pdb|3APZ|B Chain B, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
Length = 348
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 77/191 (40%), Gaps = 7/191 (3%)
Query: 138 EMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEXXXXXXXXXXXXXXFEHIAVCTKGVS 197
EMIH SL+HDD+ +D+ RRG + + + G +A
Sbjct: 97 EMIHVASLLHDDV--LDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTEV 154
Query: 198 PARIVRAIAELAKYIGADGLVAGQAEKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXT 257
A + A+ L G + E+ +++ +KT T
Sbjct: 155 VALLATAVEHLVT--GETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQT 212
Query: 258 DNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEES-- 315
+ R +GL FQ++DDILD T +S LGK + D+ +T P L +EE
Sbjct: 213 AEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFAMEEFPQ 272
Query: 316 -KKLADKLNKD 325
+++ D++ KD
Sbjct: 273 LREVVDQVEKD 283
>pdb|3LK5|A Chain A, Crystal Structure Of Putative Geranylgeranyl Pyrophosphate
Synthase From Corynebacterium Glutamicum
pdb|3QQV|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Isoprenyl
Diphosphate And Magnesium
Length = 380
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
Query: 100 MRYSLLAGGKRVRPVLCLAACDLVGGHESMA------MPAACSIEMIHTMSLIHDDLPCM 153
+R +L GGKR+RP+ A GH++ + + AA S+E I +LIHDD+ +
Sbjct: 54 LRSFVLNGGKRIRPLYAWAGFLAAQGHKNSSEKLESVLDAAASLEFIQACALIHDDI--I 111
Query: 154 DNDPLRRGKPTNH 166
D+ RRG PT H
Sbjct: 112 DSSDTRRGAPTVH 124
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 261 VEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKK 317
++ L + IG+ FQ+ DD+L + GK AG D+ K T L ++ + K
Sbjct: 239 IDALLHYGHDIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKRTVLLALALQRADK 295
>pdb|3TC1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
pdb|3TC1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
Length = 315
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 86/204 (42%), Gaps = 17/204 (8%)
Query: 135 CSI-EMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEXXXXXXXXXXXXXXFEHIAVCT 193
C+I EMI T SL+HDD +D +RR P+ + ++G F ++
Sbjct: 63 CTIVEMIQTASLLHDD--VIDKATMRRKLPSINALFGNFNAVMLGDVFYSKAFFELSKMG 120
Query: 194 KGVSPARIVRAIAELAKYIGADGLVAGQAEKDLGIEHLEFIHEHKTXXXXXXXXXXXXXX 253
+ ++ A + A+ L++ D V D + I E KT
Sbjct: 121 ELIAQA-LSNAVLRLSRGEIEDVFVGECFNSDK--QKYWRILEDKTAHFIEASLKSMAIL 177
Query: 254 XXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIE 313
+ + + F G+ FQ++DD+LD+T+ +K LGK D K T P LL
Sbjct: 178 ---LNKDAKIYADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKTTLPYLL--- 231
Query: 314 ESKKLADKLNKDAQQQL-SEFDQE 336
L +KLN+ Q L S F Q+
Sbjct: 232 ----LYEKLNQHDQGLLISYFKQD 251
>pdb|3AQ0|A Chain A, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|B Chain B, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|C Chain C, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|D Chain D, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|E Chain E, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|F Chain F, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|G Chain G, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|H Chain H, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
Length = 348
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 267 FARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDA 326
+ R +GL FQ++DDILD T +S LGK + D+ +T P L +EE +L + +++ A
Sbjct: 222 YGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVA 281
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 138 EMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 170
EMIH SL+HDD+ +D+ RRG + + + G
Sbjct: 97 EMIHVASLLHDDV--LDDADTRRGVGSLNVVMG 127
>pdb|2Q80|A Chain A, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|B Chain B, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|C Chain C, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|D Chain D, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|E Chain E, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|F Chain F, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
Length = 301
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 76/217 (35%), Gaps = 11/217 (5%)
Query: 98 ESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDP 157
E +Y L GK+VR L A + E EM+H SL+ DD+ DN
Sbjct: 15 EPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIE--DNSK 72
Query: 158 LRRGKPTNHTIYGEXXXXXXXXXXXXXXFEHIAVCTKGVSPARIVRAIAELAKYIGADGL 217
LRRG P H+IYG E + + R + EL + G D
Sbjct: 73 LRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLD-- 130
Query: 218 VAGQAEKDLGIEHLEFIHEHKTXXXXXX--XXXXXXXXXXXTDNEVEKLRTFARCIGLLF 275
+ + E E+K + E L+ +GL F
Sbjct: 131 IYWRDNYTCPTE-----EEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGLFF 185
Query: 276 QVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGI 312
Q+ DD +L K+ +DL K ++P + I
Sbjct: 186 QIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAI 222
>pdb|3PKO|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
pdb|3PKO|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
Length = 334
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 85/216 (39%), Gaps = 18/216 (8%)
Query: 92 DPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPA-----ACSIEMIHTMSLI 146
D IH + L +GGK +RP L + A PA A +IE++H +LI
Sbjct: 39 DNQPIHHKILALLKSGGKLLRP----GYFYLFSTFGNAATPAQLQAGAAAIEILHVGTLI 94
Query: 147 HDDLPCMDNDPLRRGKPTNHTIYGEXXXXXXXXXXXXXXFEHIAVCTKGVSPARIVRAIA 206
HDD +D+ P RRG T YG+ F+ + T S I I
Sbjct: 95 HDD--VIDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTDRS--LIQNHID 150
Query: 207 ELAKYI-GADGLVAGQAEKDLGIEHLEFIHE--HKTXXXXXXXXXXXXXXXXXTDNEVEK 263
+ + + G + +D+ ++ +++E KT + +++
Sbjct: 151 AMHRILQGELHQMDLNYREDITLD--AYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDR 208
Query: 264 LRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDL 299
R IG +Q++DDILD K K +DL
Sbjct: 209 TRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDL 244
>pdb|3N3D|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3N3D|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
Length = 335
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 84/212 (39%), Gaps = 18/212 (8%)
Query: 96 IHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPA-----ACSIEMIHTMSLIHDDL 150
IH + L +GGK +RP L + A PA A +IE++H +LIHDD
Sbjct: 36 IHHKILALLKSGGKLLRP----GYFYLFSTFGNAATPAQLQAGAAAIEILHVGTLIHDD- 90
Query: 151 PCMDNDPLRRGKPTNHTIYGEXXXXXXXXXXXXXXFEHIAVCTKGVSPARIVRAIAELAK 210
+D+ P RRG T YG+ F+ + T S I I + +
Sbjct: 91 -VIDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTDRS--LIQNHIDAMHR 147
Query: 211 YI-GADGLVAGQAEKDLGIEHLEFIHE--HKTXXXXXXXXXXXXXXXXXTDNEVEKLRTF 267
+ G + +D+ ++ +++E KT + +++ R
Sbjct: 148 ILQGELHQMDLNYREDITLD--AYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDI 205
Query: 268 ARCIGLLFQVVDDILDLTKSSKELGKTAGKDL 299
IG +Q++DDILD K K +DL
Sbjct: 206 GIAIGCAYQMLDDILDYAGDPKRTQKPVLEDL 237
>pdb|2AZK|A Chain A, Crystal Structure For The Mutant W136e Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
pdb|2AZK|B Chain B, Crystal Structure For The Mutant W136e Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
Length = 289
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 104 LLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKP 163
+L GKR R L + +GG + A +IE++H+ SL DD+ +D D RRG
Sbjct: 45 ILKDGKRFRGTLNMFFTVALGGDIKDSYGGALAIEILHSASLALDDI--VDLDATRRGDK 102
Query: 164 TNHTIYG 170
+YG
Sbjct: 103 AAWVVYG 109
>pdb|2DH4|A Chain A, Geranylgeranyl Pyrophosphate Synthase
pdb|2DH4|B Chain B, Geranylgeranyl Pyrophosphate Synthase
pdb|2E8T|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Fspp And Ipp
pdb|2E8T|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Fspp And Ipp
pdb|2E8U|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp (P21)
pdb|2E8U|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp (P21)
pdb|2E8V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Product Ggpp (P21)
pdb|2E8V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Product Ggpp (P21)
pdb|2E8W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp
pdb|2E8W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp
pdb|2E8X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|2E8X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|2E90|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Pyrophosphate And Fpp
pdb|2E90|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Pyrophosphate And Fpp
pdb|2E91|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-91
pdb|2E91|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-91
pdb|2E92|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-261
pdb|2E92|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-261
pdb|2E93|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-629
pdb|2E93|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-629
pdb|2E94|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-364
pdb|2E94|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-364
pdb|2E95|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-675
pdb|2E95|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-675
pdb|2Z7H|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-210
pdb|2Z7H|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-210
pdb|2Z4V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ggpp (Inhibitory Site)
pdb|2Z4V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ggpp (Inhibitory Site)
pdb|2Z4W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-749
pdb|2Z4W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-749
pdb|2Z4X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252 (P21)
pdb|2Z4X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252 (P21)
pdb|2Z4Y|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252
pdb|2Z4Y|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252
pdb|2Z4Z|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-Sc01
pdb|2Z4Z|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-Sc01
pdb|2Z50|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-28
pdb|2Z50|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-28
pdb|2Z52|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-23
pdb|2Z52|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-23
pdb|2Z78|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-806
pdb|2Z78|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-806
pdb|2Z7I|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-742
pdb|2Z7I|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-742
pdb|2ZEU|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-715
pdb|2ZEU|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-715
pdb|2ZEV|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp And Bph-715
pdb|2ZEV|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp And Bph-715
Length = 340
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 85 DAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMS 144
D S ++ I + + LL GK R L + ++ + + +E++H S
Sbjct: 17 DPVWSSQNESLISKPYNHILLKPGKNFRLNLIVQINRVMNLPKDQLAIVSQIVELLHNSS 76
Query: 145 LIHDDLPCMDNDPLRRGKPTNHTIYG 170
L+ DD+ DN PLRRG+ T+H I+G
Sbjct: 77 LLIDDIE--DNAPLRRGQTTSHLIFG 100
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 267 FARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYP 307
F +G+++Q+ DD L+L K +D+ KL++P
Sbjct: 202 FINLLGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLSFP 242
>pdb|1VG6|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123A MUTANT
Length = 299
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 88/213 (41%), Gaps = 15/213 (7%)
Query: 130 AMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEXXXXXXXXXXXXXXFEHI 189
A+ + ++E++H SL+HDD +D RRGK T + +YG+ F
Sbjct: 63 AISSLAALELVHLASLLHDD--VIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFH-- 118
Query: 190 AVCTKGVSPARIVRAIAELAKYIGADGLVAGQAEKDLGIEHLEFIHEHKTXXXXXXXXXX 249
V G + AR A+ + K A+ + K + E I E K+
Sbjct: 119 TVEEAGNNKARRA-ALNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQL 177
Query: 250 XXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKL 309
E L IG ++Q+ DDI+D K +GK DL ++P +
Sbjct: 178 PALLEGELG---EDLYNLGVTIGTIYQMFDDIMDFAGMEK-IGKDGFLDLKNGVASFPLV 233
Query: 310 LGIE---ESKKLADKLNKDAQQQLSEFDQEKAV 339
+E E++++ + N+D +S F +EK +
Sbjct: 234 TAMEKFPEARQMFE--NRDWSGLMS-FMREKGI 263
>pdb|1VG7|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123AD62A MUTANT
Length = 299
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 88/213 (41%), Gaps = 15/213 (7%)
Query: 130 AMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEXXXXXXXXXXXXXXFEHI 189
A+ + ++E++H SL+HDD +D RRGK T + +YG+ F
Sbjct: 63 AISSLAALELVHLASLLHDD--VIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFH-- 118
Query: 190 AVCTKGVSPARIVRAIAELAKYIGADGLVAGQAEKDLGIEHLEFIHEHKTXXXXXXXXXX 249
V G + AR A+ + K A+ + K + E I E K+
Sbjct: 119 TVEEAGNNKARRA-ALNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQL 177
Query: 250 XXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKL 309
E L IG ++Q+ DDI+D K +GK DL ++P +
Sbjct: 178 PALLEGELG---EDLYNLGVTIGTIYQMFDDIMDFAGMEK-IGKDGFLDLKNGVASFPLV 233
Query: 310 LGIE---ESKKLADKLNKDAQQQLSEFDQEKAV 339
+E E++++ + N+D +S F +EK +
Sbjct: 234 TAMEKFPEARQMFE--NRDWSGLMS-FMREKGI 263
>pdb|1VG2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76y Mutant
Length = 299
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 130 AMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 171
A+ + ++E++H SL+HDD +D RRGK T + +YG+
Sbjct: 63 AISSLAALELVHLYSLLHDD--VIDGARFRRGKETINFMYGD 102
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 262 EKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIE---ESKKL 318
E L IG ++Q+ DDI+D K +GK DL ++P + +E E++++
Sbjct: 187 EDLYNLGVTIGTIYQMFDDIMDFAGMEK-IGKDGFLDLKNGVASFPLVTAMEKFPEARQM 245
Query: 319 ADKLNKDAQQQLSEFDQEKAV 339
+ N+D +S F +EK +
Sbjct: 246 FE--NRDWSGLMS-FMREKGI 263
>pdb|1V4E|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
pdb|1V4E|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
Length = 299
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 130 AMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 171
A+ + ++E++H SL+HDD +D RRGK T + +YG+
Sbjct: 63 AISSLAALELVHLASLLHDD--VIDGARFRRGKETINFMYGD 102
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 262 EKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIE---ESKKL 318
E L IG ++Q+ DDI+D K +GK DL ++P + +E E++++
Sbjct: 187 EDLYNLGVTIGTIYQMFDDIMDFAGMEK-IGKDGFLDLKNGVASFPLVTAMEKFPEARQM 245
Query: 319 ADKLNKDAQQQLSEFDQEKAV 339
+ N+D +S F +EK +
Sbjct: 246 FE--NRDWSGLMS-FMREKGI 263
>pdb|1WKZ|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
pdb|1WKZ|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
Length = 299
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 130 AMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 171
A+ + ++E++H SL+HDD +D RRGK T + +YG+
Sbjct: 63 AISSLAALELVHLASLLHDD--VIDGARFRRGKETINFMYGD 102
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 262 EKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIE---ESKKL 318
E L IG ++Q+ DDI+D K +GK DL ++P + +E E++++
Sbjct: 187 EDLYNLGVTIGTIYQMFDDIMDFAGMEK-IGKDGFLDLKNGVASFPLVTAMEKFPEARQM 245
Query: 319 ADKLNKDAQQQLSEFDQEKAV 339
+ N+D +S F +EK +
Sbjct: 246 FE--NRDWSGLMS-FMREKGI 263
>pdb|1WL0|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
pdb|1WL0|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
Length = 299
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 130 AMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 171
A+ + ++E++H SL+HDD +D RRGK T + +YG+
Sbjct: 63 AISSLAALELVHLASLLHDD--VIDGARFRRGKETINFMYGD 102
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 262 EKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIE---ESKKL 318
E L IG ++Q+ DDI+D K +GK DL ++P + +E E++++
Sbjct: 187 EDLYNLGVTIGTIYQMFDDIMDFAGMEK-IGKDGFLDLKNGVASFPLVTAMEKFPEARQM 245
Query: 319 ADKLNKDAQQQLSEFDQEKAV 339
+ N+D +S F +EK +
Sbjct: 246 FE--NRDWSGLMS-FMREKGI 263
>pdb|1V4H|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F52a Mutant
Length = 299
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 130 AMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 171
A+ + ++E++H SL+HDD +D RRGK T + +YG+
Sbjct: 63 AISSLAALELVHLASLLHDD--VIDGARFRRGKETINFMYGD 102
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 262 EKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIE---ESKKL 318
E L IG ++Q+ DDI+D K +GK DL ++P + +E E++++
Sbjct: 187 EDLYNLGVTIGTIYQMFDDIMDFAGMEK-IGKDGFLDLKNGVASFPLVTAMEKFPEARQM 245
Query: 319 ADKLNKDAQQQLSEFDQEKAV 339
+ N+D +S F +EK +
Sbjct: 246 FE--NRDWSGLMS-FMREKGI 263
>pdb|1V4I|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132a Mutant
Length = 299
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 130 AMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 171
A+ + ++E++H SL+HDD +D RRGK T + +YG+
Sbjct: 63 AISSLAALELVHLASLLHDD--VIDGARFRRGKETINFMYGD 102
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 262 EKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIE---ESKKL 318
E L IG ++Q+ DDI+D K +GK DL ++P + +E E++++
Sbjct: 187 EDLYNLGVTIGTIYQMFDDIMDFAGMEK-IGKDGFLDLKNGVASFPLVTAMEKFPEARQM 245
Query: 319 ADKLNKDAQQQLSEFDQEKAV 339
+ N+D +S F +EK +
Sbjct: 246 FE--NRDWSGLMS-FMREKGI 263
>pdb|2AZL|A Chain A, Crystal Structure For The Mutant F117e Of Thermotoga
Maritima Octaprenyl Pyrophosphate Synthase
Length = 299
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 130 AMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 171
A+ + ++E++H SL+HDD +D RRGK T + +YG+
Sbjct: 63 AISSLAALELVHLASLLHDD--VIDGARFRRGKETINFMYGD 102
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 262 EKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIE---ESKKL 318
E L IG ++Q+ DDI+D K +GK DL ++P + +E E++++
Sbjct: 187 EDLYNLGVTIGTIYQMFDDIMDFAGMEK-IGKDGFLDLKNGVASFPLVTAMEKFPEARQM 245
Query: 319 ADKLNKDAQQQLSEFDQEKAV 339
+ N+D +S F +EK +
Sbjct: 246 FE--NRDWSGLMS-FMREKGI 263
>pdb|1VG4|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
pdb|1VG4|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
Length = 299
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 130 AMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 171
A+ + ++E++H SL+HDD +D RRGK T + +YG+
Sbjct: 63 AISSLAALELVHLASLLHDD--VIDGARFRRGKETINFMYGD 102
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 262 EKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIE---ESKKL 318
E L IG ++Q+ DDI+D K +GK DL ++P + +E E++++
Sbjct: 187 EDLYNLGVTIGTIYQMFDDIMDFAGMEK-IGKDGFLDLKNGVASFPLVTAMEKFPEARQM 245
Query: 319 ADKLNKDAQQQLSEFDQEKAV 339
+ N+D +S F +EK +
Sbjct: 246 FE--NRDWSGLMS-FMREKGI 263
>pdb|2AZJ|A Chain A, Crystal Structure For The Mutant D81c Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
pdb|2AZJ|B Chain B, Crystal Structure For The Mutant D81c Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
Length = 289
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 104 LLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKP 163
+L GKR R L + +GG + A +IE++H+ SL D+ +D D RRG
Sbjct: 45 ILKDGKRFRGTLNMFFTVALGGDIKDSYGGALAIEILHSASLALCDI--VDLDATRRGDK 102
Query: 164 TNHTIYG 170
+YG
Sbjct: 103 AAWVVYG 109
>pdb|1V4J|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
pdb|1V4J|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
Length = 299
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 130 AMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 171
A+ + ++E+ H SL+HDD +D RRGK T + +YG+
Sbjct: 63 AISSLAALELYHLASLLHDD--VIDGARFRRGKETINFMYGD 102
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 262 EKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIE---ESKKL 318
E L IG ++Q+ DDI+D K +GK DL ++P + +E E++++
Sbjct: 187 EDLYNLGVTIGTIYQMFDDIMDFAGMEK-IGKDGFLDLKNGVASFPLVTAMEKFPEARQM 245
Query: 319 ADKLNKDAQQQLSEFDQEKAV 339
+ N+D +S F +EK +
Sbjct: 246 FE--NRDWSGLMS-FMREKGI 263
>pdb|1WMW|A Chain A, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|B Chain B, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|C Chain C, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|D Chain D, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
Length = 330
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 107 GGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNH 166
GGK +R +L + + G + AA ++E+ L+HDD+ D RRG+P H
Sbjct: 38 GGKMLRGLLTVYSALAHGAPLEAGLEAATALELFQNWVLVHDDIE--DGSEERRGRPALH 95
Query: 167 TIY 169
++
Sbjct: 96 RLH 98
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 271 IGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEES 315
+G FQ+VDD+L+L + + GK DL K T L +EE+
Sbjct: 204 LGTAFQIVDDVLNL-EGGEAYGKERAGDLYEGKRTLILLRFLEEA 247
>pdb|1VG3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76yS77F
MUTANT
Length = 299
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 130 AMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 171
A+ + ++E++H L+HDD +D RRGK T + +YG+
Sbjct: 63 AISSLAALELVHLYFLLHDD--VIDGARFRRGKETINFMYGD 102
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 262 EKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIE---ESKKL 318
E L IG ++Q+ DDI+D K +GK DL ++P + +E E++++
Sbjct: 187 EDLYNLGVTIGTIYQMFDDIMDFAGMEK-IGKDGFLDLKNGVASFPLVTAMEKFPEARQM 245
Query: 319 ADKLNKDAQQQLSEFDQEKAV 339
+ N+D +S F +EK +
Sbjct: 246 FE--NRDWSGLMS-FMREKGI 263
>pdb|1V4K|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima S77f Mutant
Length = 299
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 130 AMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 171
A+ + ++E++H L+HDD +D RRGK T + +YG+
Sbjct: 63 AISSLAALELVHLAFLLHDD--VIDGARFRRGKETINFMYGD 102
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 262 EKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIE---ESKKL 318
E L IG ++Q+ DDI+D K +GK DL ++P + +E E++++
Sbjct: 187 EDLYNLGVTIGTIYQMFDDIMDFAGMEK-IGKDGFLDLKNGVASFPLVTAMEKFPEARQM 245
Query: 319 ADKLNKDAQQQLSEFDQEKAV 339
+ N+D +S F +EK +
Sbjct: 246 FE--NRDWSGLMS-FMREKGI 263
>pdb|1WL2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R90a Mutant
Length = 299
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 130 AMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 171
A+ + ++E++H SL+HDD +D RGK T + +YG+
Sbjct: 63 AISSLAALELVHLASLLHDD--VIDGARFARGKETINFMYGD 102
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 262 EKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIE---ESKKL 318
E L IG ++Q+ DDI+D K +GK DL ++P + +E E++++
Sbjct: 187 EDLYNLGVTIGTIYQMFDDIMDFAGMEK-IGKDGFLDLKNGVASFPLVTAMEKFPEARQM 245
Query: 319 ADKLNKDAQQQLSEFDQEKAV 339
+ N+D +S F +EK +
Sbjct: 246 FE--NRDWSGLMS-FMREKGI 263
>pdb|1WL3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
pdb|1WL3|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
Length = 299
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 130 AMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 171
A+ + ++E++H SL+HDD +D R GK T + +YG+
Sbjct: 63 AISSLAALELVHLASLLHDD--VIDGARFRAGKETINFMYGD 102
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 262 EKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIE---ESKKL 318
E L IG ++Q+ DDI+D K +GK DL ++P + +E E++++
Sbjct: 187 EDLYNLGVTIGTIYQMFDDIMDFAGMEK-IGKDGFLDLKNGVASFPLVTAMEKFPEARQM 245
Query: 319 ADKLNKDAQQQLSEFDQEKAV 339
+ N+D +S F +EK +
Sbjct: 246 FE--NRDWSGLMS-FMREKGI 263
>pdb|4FP4|A Chain A, Crystal Structure Of Isoprenoid Synthase A3mx09 (Target
Efi-501993) From Pyrobaculum Calidifontis
pdb|4FP4|B Chain B, Crystal Structure Of Isoprenoid Synthase A3mx09 (Target
Efi-501993) From Pyrobaculum Calidifontis
Length = 285
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 131 MPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 171
+ AA +E++H +SL+ DD MD RRG T +YG+
Sbjct: 71 LEAAAIVELLHVVSLLQDD--VMDQHDQRRGIKTPRAMYGD 109
>pdb|3CC9|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3EZ3|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3PH7|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3RBM|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RYW|A Chain A, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|B Chain B, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|C Chain C, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|D Chain D, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
Length = 396
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 262 EKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYP 307
+K+ + +G FQ+ DD LD+ S + GK G D+ +KLT+P
Sbjct: 270 KKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKV-GSDIQNNKLTWP 314
>pdb|3MAV|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
Length = 395
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 262 EKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYP 307
+K+ + +G FQ+ DD LD+ S + GK G D+ +KLT+P
Sbjct: 269 KKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKV-GSDIQNNKLTWP 313
>pdb|1WL1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
pdb|1WL1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
Length = 299
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 262 EKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIE---ESKKL 318
E L IG ++Q+ DDI+D K +GK DL ++P + +E E++++
Sbjct: 187 EDLYNLGVTIGTIYQMFDDIMDFAGMEK-IGKDGFLDLKNGVASFPLVTAMEKFPEARQM 245
Query: 319 ADKLNKDAQQQLSEFDQEKAV 339
+ N+D +S F +EK +
Sbjct: 246 FE--NRDWSGLMS-FMREKGI 263
>pdb|4E1E|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-hexylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
Length = 361
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 259 NEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTY 306
N VE++ A IG FQV DD++D ++LGK G D+ K ++
Sbjct: 232 NLVERV---AHLIGEYFQVQDDVMDCFTPPEQLGKV-GTDIEDAKCSW 275
>pdb|4DZW|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(cyclohexylamino)ethane-1,1-diyl]bisphosphonic Acid
And Mg2+
Length = 362
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 259 NEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTY 306
N VE++ A IG FQV DD++D ++LGK G D+ K ++
Sbjct: 233 NLVERV---AHLIGEYFQVQDDVMDCFTPPEQLGKV-GTDIEDAKCSW 276
>pdb|1YHK|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase
pdb|1YHL|A Chain A, Structure Of The Complex Of Trypanosoma Cruzi Farnesyl
Diphosphate Synthase With Risedronate, Dmapp And Mg+2
pdb|3IBA|A Chain A, Crystal Structure Of The Complex Of Trypanosoma Cruzi
Farnesyl Diphosphate Synthase With Zoledronate, Ipp And
Mg2+
pdb|3ICK|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With Minodronate And Isopentenyl Disphosphate
pdb|3ICM|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With Isopentenyl Pyrophosphate, Mg2+ And
1-(2-
Hydroxy-2,2-Bis-Phosphono-Ethyl)-3-Phenyl-Pyridinium
pdb|3ICN|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With Isopentenyl Pyrophosphate And
3-Fluoro-1-(2-
Hydroxy-2,2-Bis-Phosphono-Ethyl)-Pyridinium
pdb|3ICZ|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With
1-(2,2-Bis-Phosphono-Ethyl)-3-Butyl-Pyridinium And
Isopentenyl Pyrophosphate
pdb|3ID0|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Homodimer
In Complex With
3-Fluoro-1-(2-Hydroxy-2,2-Bisphosphono-Ethyl) Pyridinium
pdb|4DWB|A Chain A, Crystal Structure Of Trypanosoma Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-pentylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DWG|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-heptylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DXJ|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-propylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DXJ|B Chain B, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-propylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
pdb|4DXJ|C Chain C, Crystal Structure Of Trypanosome Cruzi Farnesyl
Diphosphate Synthase In Complex With
[2-(n-propylamino)ethane-1,1-diyl]bisphosphonic Acid And
Mg2+
Length = 362
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 259 NEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTY 306
N VE++ A IG FQV DD++D ++LGK G D+ K ++
Sbjct: 233 NLVERV---AHLIGEYFQVQDDVMDCFTPPEQLGKV-GTDIEDAKCSW 276
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,911,980
Number of Sequences: 62578
Number of extensions: 318061
Number of successful extensions: 851
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 704
Number of HSP's gapped (non-prelim): 102
length of query: 353
length of database: 14,973,337
effective HSP length: 100
effective length of query: 253
effective length of database: 8,715,537
effective search space: 2205030861
effective search space used: 2205030861
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)