BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038854
(353 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea
brasiliensis GN=GGPS PE=1 SV=1
Length = 370
Score = 514 bits (1324), Expect = e-145, Method: Compositional matrix adjust.
Identities = 257/370 (69%), Positives = 302/370 (81%), Gaps = 17/370 (4%)
Query: 1 MSCVNLAAWTQTCSIFNQASSRRSNKTQ---PFRTLKTLPVSLASQRPRRPVS-ISAV-- 54
MS VNL +W T + NQA+ RS PF LK+L +S A ++ RP+S +SA+
Sbjct: 1 MSSVNLGSWVHTSYVLNQATRSRSKSKSFSLPFNPLKSLAISFAYRKSERPISSVSAIIT 60
Query: 55 ---QTL-EENPAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKR 110
+TL EE P P+FDFKSYM+QK +++NQAL+AA+ L++P KIHESMRYSLLAGGKR
Sbjct: 61 KEEETLQEEQNNPPPSFDFKSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGGKR 120
Query: 111 VRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 170
VRP LCLAAC+LVGG++SMAMPAAC++EMIHTMSLIHDDLPCMDND LRRGKPTNH ++G
Sbjct: 121 VRPALCLAACELVGGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHIVFG 180
Query: 171 EDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQ-------AE 223
EDVAVLAGDALLA+AFEHIAV T VS ARIVRA+ ELAK IGA+GLVAGQ
Sbjct: 181 EDVAVLAGDALLAFAFEHIAVSTLNVSSARIVRAVGELAKAIGAEGLVAGQVVDINSEGS 240
Query: 224 KDLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILD 283
++ +E LEFIH HKTA LLE AVVLGAILGGGTD EVEKLR +AR IGLLFQVVDDILD
Sbjct: 241 SEVDLEKLEFIHIHKTAKLLEGAVVLGAILGGGTDEEVEKLRKYARDIGLLFQVVDDILD 300
Query: 284 LTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIA 343
+TKSS+ELGKTAGKDLVADK+TYPKLLGIE+S++ A+KLNK+AQ+QL+ FD EKA PLIA
Sbjct: 301 VTKSSQELGKTAGKDLVADKVTYPKLLGIEKSREFAEKLNKEAQEQLAGFDPEKAAPLIA 360
Query: 344 LANYIAYRQN 353
LANYIA+RQN
Sbjct: 361 LANYIAHRQN 370
>sp|Q42698|GGPPS_CATRO Geranylgeranyl pyrophosphate synthase, chloroplastic
OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1
Length = 357
Score = 462 bits (1190), Expect = e-129, Method: Compositional matrix adjust.
Identities = 234/358 (65%), Positives = 282/358 (78%), Gaps = 29/358 (8%)
Query: 23 RSNKTQPFRTLKTLPVSL-ASQRPRRPV------SISAVQTLEENPAPSPTF-------- 67
RSN P + LP+S S R+P+ SISA+ T E+ S +
Sbjct: 2 RSNLCHPLKN--QLPISFFLSGTIRKPIFSCSRLSISAIITKEQTQEESESKSKKEVAFS 59
Query: 68 -----DFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDL 122
DFK+YMI KA++VN+AL+ AV +++P+KIHESMRYSLLAGGKRVRP+LC+AAC+L
Sbjct: 60 SSSSFDFKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGGKRVRPMLCIAACEL 119
Query: 123 VGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALL 182
GG ES+AMP+AC++EMIHTMSL+HDDLPCMDND LRRGKPTNH ++GEDVAVLAGDALL
Sbjct: 120 FGGTESVAMPSACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALL 179
Query: 183 AYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQAEK-------DLGIEHLEFIH 235
A+AFEHIA TKGVS RIVR + ELAK IG++GLVAGQ D+G+EHLEFIH
Sbjct: 180 AFAFEHIATATKGVSSERIVRVVGELAKCIGSEGLVAGQVVDVCSEGIADVGLEHLEFIH 239
Query: 236 EHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTA 295
HKTAALLE +VVLGAI+GG D ++ KLR FARCIGLLFQVVDDILD+TKSS+ELGKTA
Sbjct: 240 IHKTAALLEGSVVLGAIVGGANDEQISKLRKFARCIGLLFQVVDDILDVTKSSQELGKTA 299
Query: 296 GKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 353
GKDLVADK+TYPKLLGI++S++ A+KLN++AQ+QL+EFD EKA PLIALANYIAYR N
Sbjct: 300 GKDLVADKVTYPKLLGIDKSREFAEKLNREAQEQLAEFDPEKAAPLIALANYIAYRDN 357
>sp|P34802|GGPP1_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit
1, chloroplastic OS=Arabidopsis thaliana GN=GGPPS1 PE=1
SV=2
Length = 371
Score = 461 bits (1187), Expect = e-129, Method: Compositional matrix adjust.
Identities = 236/377 (62%), Positives = 287/377 (76%), Gaps = 30/377 (7%)
Query: 1 MSCVNLAAWTQT--------CSIFNQASSRRSNKTQPFRTLKTLPVSLASQRP---RRPV 49
M+ V L +W SI ++ SR T T P+S S+R +
Sbjct: 1 MASVTLGSWIVVHHHNHHHPSSILTKSRSRSCPITL------TKPISFRSKRTVSSSSSI 54
Query: 50 SISAVQTLEENPAPS--PTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAG 107
S+V T E+N S +FDF SY+I KA VN+ALD+AV L++P+KIHE+MRYSLLAG
Sbjct: 55 VSSSVVTKEDNLRQSEPSSFDFMSYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAG 114
Query: 108 GKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHT 167
GKRVRPVLC+AAC+LVGG ES AMPAAC++EMIHTMSLIHDDLPCMDND LRRGKPTNH
Sbjct: 115 GKRVRPVLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHK 174
Query: 168 IYGEDVAVLAGDALLAYAFEHIAVCTKG--VSPARIVRAIAELAKYIGADGLVAGQAE-- 223
++GEDVAVLAGDALL++AFEH+A T VSP R+VRA+ ELAK IG +GLVAGQ
Sbjct: 175 VFGEDVAVLAGDALLSFAFEHLASATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQVVDI 234
Query: 224 -------KDLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQ 276
D+G+EHLEFIH HKTAALLEA+ VLGAI+GGG+D+E+E+LR FARCIGLLFQ
Sbjct: 235 SSEGLDLNDVGLEHLEFIHLHKTAALLEASAVLGAIVGGGSDDEIERLRKFARCIGLLFQ 294
Query: 277 VVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQE 336
VVDDILD+TKSSKELGKTAGKDL+ADKLTYPK++G+E+S++ A+KLN++A+ QL FD +
Sbjct: 295 VVDDILDVTKSSKELGKTAGKDLIADKLTYPKIMGLEKSREFAEKLNREARDQLLGFDSD 354
Query: 337 KAVPLIALANYIAYRQN 353
K PL+ALANYIAYRQN
Sbjct: 355 KVAPLLALANYIAYRQN 371
>sp|P80042|GGPPS_CAPAN Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Capsicum
annuum GN=GGPS1 PE=3 SV=1
Length = 369
Score = 457 bits (1177), Expect = e-128, Method: Compositional matrix adjust.
Identities = 234/368 (63%), Positives = 283/368 (76%), Gaps = 17/368 (4%)
Query: 1 MSCVNLAAWTQTCSIFNQASSRRSNK---TQPFRTLKTLPVSLASQRPRRPVSISAVQTL 57
M+ V+L A Q C +FNQ S +S P + K P L +RP P+++SA+ T
Sbjct: 4 MNLVDLWA-QQACLVFNQTLSYKSFNGFMKIPLKNSKINP-KLNKKRPFSPLTVSAIATT 61
Query: 58 EEN-----PAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVR 112
+E+ F+FK Y+ +KA +VN+ALD A+ +K+P IHE+MRYSLLAGGKRVR
Sbjct: 62 KEDERIEAAQTEEPFNFKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLAGGKRVR 121
Query: 113 PVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGED 172
P+LCLAAC+LVGG++ AM AAC++EMIHTMSLIHDDLPCMDND LRRGKPTNH IYGED
Sbjct: 122 PMLCLAACELVGGNQENAMAAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKIYGED 181
Query: 173 VAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQ-------AEKD 225
VAVLAGD+LLA+AFEHI T GV+P+RIV A+AELAK IG +GLVAGQ
Sbjct: 182 VAVLAGDSLLAFAFEHIVNSTAGVTPSRIVGAVAELAKSIGTEGLVAGQVADIKCTGNAS 241
Query: 226 LGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLT 285
+ +E LEFIH HKTAALLE++VVLGAILGGGT+ EVEKLR FARCIGLLFQVVDDILD+T
Sbjct: 242 VSLETLEFIHVHKTAALLESSVVLGAILGGGTNVEVEKLRRFARCIGLLFQVVDDILDVT 301
Query: 286 KSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALA 345
KSS+ELGKTAGKDLV DK TYPKLLG+E++K+ A +LN++A+QQL FD KA PLIALA
Sbjct: 302 KSSEELGKTAGKDLVVDKTTYPKLLGLEKAKEFAAELNREAKQQLEGFDSRKAAPLIALA 361
Query: 346 NYIAYRQN 353
+YIAYR N
Sbjct: 362 DYIAYRDN 369
>sp|Q43133|GGPPS_SINAL Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic
OS=Sinapis alba GN=GGPS1 PE=1 SV=1
Length = 366
Score = 456 bits (1174), Expect = e-128, Method: Compositional matrix adjust.
Identities = 231/368 (62%), Positives = 285/368 (77%), Gaps = 21/368 (5%)
Query: 2 SCVNLAAWT----QTCSIFNQASSRRSNKTQPFRTLKTLPVSLASQRPRRPVSISAVQTL 57
S L +W +I Q+ SR P + P+SL +R S S++ T
Sbjct: 4 SVTPLGSWVLLHHHPSTILTQSRSR-----SPPSLITLKPISLTPKRTVSSSSSSSLITK 58
Query: 58 EEN--PAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVL 115
E+N + S +FDF SY+I+KA +VN+ALD+AV L++P+KIHE+MRYSLLAGGKRVRPVL
Sbjct: 59 EDNNLKSSSSSFDFMSYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVL 118
Query: 116 CLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAV 175
C+AAC+LVGG ES+AMPA C++EMIHTMSLIHDDLPCMDND LRRGKPTNH +YGEDVAV
Sbjct: 119 CIAACELVGGEESLAMPARCAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAV 178
Query: 176 LAGDALLAYAFEHIAVCTKG-VSPARIVRAIAELAKYIGADGLVAGQAE---------KD 225
LAGDALL++AFEH+A T VSPAR+VRA+ ELAK IG +GLVAGQ +
Sbjct: 179 LAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNN 238
Query: 226 LGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLT 285
+G+EHL+FIH HKTAALLEA+ VLG I+GGG+D E+E+LR FARCIGLLFQVVDDILD+T
Sbjct: 239 VGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVT 298
Query: 286 KSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALA 345
KSS+ELGKTAGKDL+ADKLTYPKL+G+E+S++ A+KLN +A+ QL FD +K PL+ALA
Sbjct: 299 KSSQELGKTAGKDLIADKLTYPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALA 358
Query: 346 NYIAYRQN 353
NYIA RQN
Sbjct: 359 NYIANRQN 366
>sp|Q9ZU77|GGPP7_ARATH Geranylgeranyl pyrophosphate synthase 7, chloroplastic
OS=Arabidopsis thaliana GN=At2g18620 PE=2 SV=1
Length = 347
Score = 452 bits (1164), Expect = e-126, Method: Compositional matrix adjust.
Identities = 231/362 (63%), Positives = 275/362 (75%), Gaps = 24/362 (6%)
Query: 1 MSCVNLAAWTQTCSIFNQASSRRSNKTQPFRTLKTLPVSLASQRPRRPVSISAVQTLEEN 60
M+ +NL+ + + I + AS K QPF RR +S T +
Sbjct: 1 MTTLNLSIF-PSVKISSSASIPGFIKIQPFLL-------------RRKLSTVLSVTARDE 46
Query: 61 PAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAAC 120
FDF SYMI KA+ VN+ALD+AVSL++P+KIHE++RYSLLA GKRVRPVLC+AAC
Sbjct: 47 GIIHNHFDFTSYMIGKANAVNEALDSAVSLREPIKIHEAIRYSLLARGKRVRPVLCIAAC 106
Query: 121 DLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDA 180
+LVGG ES+A+PAAC++EMIHTMSLIHDDLPCMDND LRRGKPTNH ++GEDVAVLAGDA
Sbjct: 107 ELVGGEESVALPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDA 166
Query: 181 LLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQA---------EKDLGIEHL 231
L+++AFEH+A T VSPAR+VRAI ELAK IG+ GLVAGQ + D+G+E L
Sbjct: 167 LISFAFEHLATST-AVSPARVVRAIGELAKAIGSKGLVAGQVVDLTSGGMDQNDVGLEVL 225
Query: 232 EFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKEL 291
EFIH HKTA LLEAA VLGAI+GGG+D EVEKLR FARCIGLLFQVVDDILD+TKSS+EL
Sbjct: 226 EFIHVHKTAVLLEAATVLGAIVGGGSDEEVEKLRRFARCIGLLFQVVDDILDVTKSSEEL 285
Query: 292 GKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYR 351
GKTAGKDL+ADKLTYPKL+G+E+SK ADKL DA +QL FD + PL+ALANYIA R
Sbjct: 286 GKTAGKDLIADKLTYPKLMGLEKSKDFADKLLSDAHEQLHGFDSSRVKPLLALANYIAKR 345
Query: 352 QN 353
QN
Sbjct: 346 QN 347
>sp|Q9SLG2|GGPP4_ARATH Geranylgeranyl pyrophosphate synthase 4 OS=Arabidopsis thaliana
GN=GGPP4 PE=2 SV=1
Length = 372
Score = 398 bits (1022), Expect = e-110, Method: Compositional matrix adjust.
Identities = 194/328 (59%), Positives = 251/328 (76%), Gaps = 13/328 (3%)
Query: 37 PVSLA--SQRPRRPVSISAVQTLEENPAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPV 94
PV+ A +++ R S+++ + E +FDFK YMI KA T+N+ALD A+ L +P+
Sbjct: 47 PVAAAIFARKDTREFLDSSIKLVNEEDDFGFSFDFKPYMISKAETINRALDEAIPLIEPL 106
Query: 95 KIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMD 154
IH++MRY++LAGGKRVRP+LCLAAC+LVGG E +A+ AAC++EMIHTMSLI DDLPCMD
Sbjct: 107 NIHKAMRYAILAGGKRVRPILCLAACELVGGEERLAIQAACAVEMIHTMSLIKDDLPCMD 166
Query: 155 NDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGA 214
ND LRRGKPT H ++GE VA+L+G ALLA AFEH+ VS ++VRA+ ELAK IG
Sbjct: 167 NDDLRRGKPTTHKVFGESVAILSGGALLALAFEHLT--EADVSSKKMVRAVKELAKSIGT 224
Query: 215 DGLVAGQA---------EKDLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLR 265
GLVAGQA + D+G+E LE+IH HKT +LLEA+ V+GA++GGGT+ E+EK+R
Sbjct: 225 KGLVAGQAKDLSSEGLEQNDVGLEDLEYIHVHKTGSLLEASAVIGAVIGGGTEKEIEKVR 284
Query: 266 TFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKD 325
FARCIGLLFQVVDDILD TKSS+ELGKTAGKD VA KLTYPK++G+E+SK+ +KL +D
Sbjct: 285 NFARCIGLLFQVVDDILDETKSSEELGKTAGKDKVAGKLTYPKVIGVEKSKEFVEKLKRD 344
Query: 326 AQQQLSEFDQEKAVPLIALANYIAYRQN 353
A++ L FD +K PLIAL N+IA R +
Sbjct: 345 AREHLQGFDSDKVKPLIALTNFIANRNH 372
>sp|O04046|GGPP2_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 2
OS=Arabidopsis thaliana GN=GGPPS2 PE=1 SV=2
Length = 376
Score = 391 bits (1005), Expect = e-108, Method: Compositional matrix adjust.
Identities = 187/296 (63%), Positives = 231/296 (78%), Gaps = 11/296 (3%)
Query: 66 TFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGG 125
TF+F YM+ KA +VN+AL+ A+ + +P+KIHE+MRY++LA GKRVRP+LCLA+C+LVGG
Sbjct: 82 TFEFDPYMMSKAESVNKALEEAIPVGEPLKIHEAMRYAILAAGKRVRPILCLASCELVGG 141
Query: 126 HESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYA 185
E+ AMPAAC++EMIHTMSLI DDLPCMDND LRRGKPT H +YGE VA+L+G ALL+ A
Sbjct: 142 QENAAMPAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVYGEGVAILSGGALLSLA 201
Query: 186 FEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQAE---------KDLGIEHLEFIHE 236
FEH+ T +S R+V A+ ELA+ IG GLVAGQA ++G+EHLEFIH
Sbjct: 202 FEHMT--TAEISSERMVWAVRELARSIGTRGLVAGQAMDISSEGLDLNEVGLEHLEFIHV 259
Query: 237 HKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAG 296
HKTA LLE A VLGAI+GGG+D E+E +R FARCIGLLFQVVDDILD TKSS+ELGKTAG
Sbjct: 260 HKTAVLLETAAVLGAIIGGGSDEEIESVRKFARCIGLLFQVVDDILDETKSSEELGKTAG 319
Query: 297 KDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQ 352
KD +A KLTYPKL+G+E+SK+ +L KDA+Q L F EK PL+AL +IA R
Sbjct: 320 KDQLAGKLTYPKLIGLEKSKEFVKRLTKDARQHLQGFSSEKVAPLVALTTFIANRN 375
>sp|Q9LRR0|GGPP8_ARATH Putative geranylgeranyl pyrophosphate synthase 8, chloroplastic
OS=Arabidopsis thaliana GN=At3g14510 PE=5 SV=2
Length = 361
Score = 385 bits (989), Expect = e-106, Method: Compositional matrix adjust.
Identities = 207/367 (56%), Positives = 279/367 (76%), Gaps = 23/367 (6%)
Query: 2 SCVNLAAWTQTCSIFNQASSRRSNKTQPFRTLKTL----PVSLASQRPRRPVSISAVQTL 57
+ V+L+++ S+F Q+ RR N ++LK P S + + R + ++
Sbjct: 3 TTVHLSSF----SLFIQSRGRRDNSISSVKSLKKRTGLSPSSALTSQGGRDMIPPQGKSN 58
Query: 58 EENPAPSPTFDFKSYMIQKASTVNQALDAA-VSLKDPVKIHESMRYSLLAGGKRVRPVLC 116
+ N A FDFK YMI+KA +VN ALD + V L++P+ + E++RYSLLAGGKRVRP+LC
Sbjct: 59 DHNSA----FDFKLYMIRKAESVNAALDVSIVPLREPLTVQEAVRYSLLAGGKRVRPLLC 114
Query: 117 LAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVL 176
+A C+LVGG E+ AM AAC++EMIHT SLIHDDLPCMDN LRRGKPTNH ++GED+AVL
Sbjct: 115 IAVCELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVFGEDMAVL 174
Query: 177 AGDALLAYAFEHIAVCTKG-VSPARIVRAIAELAKYIGADGLVAGQ-----AEK----DL 226
AGDALLA AFEH+ V + G V+ R++RA+ ELA+ IG GLVAGQ +E+ D+
Sbjct: 175 AGDALLALAFEHMTVVSSGLVASERMIRAVVELARAIGTKGLVAGQVVDLSSERLNPHDV 234
Query: 227 GIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTK 286
G+E LEFIH HKTAALLEAA V+GAI+GGGT+ E+EKLR +ARCIGLLFQVVDDILD+TK
Sbjct: 235 GLERLEFIHLHKTAALLEAAAVIGAIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTK 294
Query: 287 SSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALAN 346
S++ELGKTAGKD++A KLTYP+L+G+E S+++A+KL+++A++QL F+ +KA PL+ALA+
Sbjct: 295 STEELGKTAGKDVMAGKLTYPRLIGLERSREVAEKLSREAEEQLLGFESDKAAPLVALAS 354
Query: 347 YIAYRQN 353
YI+ R +
Sbjct: 355 YISCRND 361
>sp|Q9LUD9|GGPP3_ARATH Geranylgeranyl pyrophosphate synthase 3, chloroplastic
OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1
Length = 360
Score = 378 bits (971), Expect = e-104, Method: Compositional matrix adjust.
Identities = 213/366 (58%), Positives = 276/366 (75%), Gaps = 22/366 (6%)
Query: 2 SCVNLAAWTQTCSIFNQASSRRSNKTQPFRTLKTL----PVSLASQRPRRPVSISAVQTL 57
+ V+L+++ S+F Q+ RR N ++LK P S + + R + +
Sbjct: 3 TTVHLSSF----SLFIQSRGRRDNSISSVKSLKKRTGLSPSSALTSQGGRDMIPPEGKCN 58
Query: 58 EENPAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCL 117
+ N A FDFK YMI+KA +VN ALD +V L++P+ + E++RYSLLAGGKRVRP+LC+
Sbjct: 59 DHNSA----FDFKLYMIRKAESVNAALDVSVPLREPLTVQEAVRYSLLAGGKRVRPLLCI 114
Query: 118 AACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLA 177
A C+LVGG E+ AM AAC++EMIHT SLIHDDLPCMDN LRRGKPTNH +YGED+AVLA
Sbjct: 115 AVCELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVYGEDMAVLA 174
Query: 178 GDALLAYAFEHIAVCTKG-VSPARIVRAIAELAKYIGADGLVAGQ-----AEK----DLG 227
GDALLA AFEH+ V + G V+P R++RA+ ELA+ IG GLVAGQ +E+ +G
Sbjct: 175 GDALLALAFEHMTVVSSGLVAPERMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVG 234
Query: 228 IEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKS 287
+EHLEFIH HKTAALLEAA VLG I+GGGT+ E+EKLR +ARCIGLLFQVVDDILD+TKS
Sbjct: 235 LEHLEFIHLHKTAALLEAAAVLGVIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKS 294
Query: 288 SKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANY 347
++ELGKTAGKD++A KLTYP+L+G+E SK++A+KL ++A++QL FD KA PL+ALA+Y
Sbjct: 295 TEELGKTAGKDVMAGKLTYPRLIGLERSKEVAEKLRREAEEQLLGFDPSKAAPLVALASY 354
Query: 348 IAYRQN 353
IA R N
Sbjct: 355 IACRHN 360
>sp|Q9LJY2|GGPPA_ARATH Geranylgeranyl pyrophosphate synthase 10, mitochondrial
OS=Arabidopsis thaliana GN=At3g20160 PE=2 SV=1
Length = 344
Score = 377 bits (969), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/336 (57%), Positives = 249/336 (74%), Gaps = 18/336 (5%)
Query: 30 FRTLKTLPVSLASQRPRRPVSISAVQTLEENPAPSPTFDFKSYMIQKASTVNQALDAAVS 89
FR+L+ L RPR SA+ T A S F F SYM+ KA +VN+AL+ AV
Sbjct: 15 FRSLQFL---FWRFRPRYNDVTSAL-TRPLTSAASYDFKFMSYMVNKAKSVNKALEEAVP 70
Query: 90 LKDP-VKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHD 148
L++P +KI E+MRY+LL+ GKRVRP+LCLAAC+LVGG ES AM AAC+IEM+H SLI D
Sbjct: 71 LREPELKIREAMRYTLLSDGKRVRPMLCLAACELVGGQESTAMSAACAIEMLHASSLILD 130
Query: 149 DLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCT-KGVSPARIVRAIAE 207
DLPCMDND LRRGKPTNH ++GE +A+LA AL+A A + T V P RI++ + E
Sbjct: 131 DLPCMDNDSLRRGKPTNHIVFGESIAILASQALIALAVQKTTSSTFADVPPERILKTVQE 190
Query: 208 LAKYIGADGLVAGQA----------EKDLGIEHLEFIHEHKTAALLEAAVVLGAILGGGT 257
+ K + +GLVAGQ + D G+EHLEFIH HKTAALLEAA V+GAI+GGG+
Sbjct: 191 MVKAV--EGLVAGQQADLAGEGMRFDSDTGLEHLEFIHIHKTAALLEAAAVMGAIMGGGS 248
Query: 258 DNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKK 317
D E+E+LR++ARCIGL+FQVVDD+LD+TKSS+ELGKTAGKDL+A KLTYP+L+G+E+SK+
Sbjct: 249 DEEIERLRSYARCIGLMFQVVDDVLDVTKSSEELGKTAGKDLIAGKLTYPRLMGVEKSKE 308
Query: 318 LADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 353
A++LN +A++ L FD +K PL++LA+YI RQN
Sbjct: 309 YAERLNIEAREHLLGFDIDKVAPLVSLADYIVNRQN 344
>sp|Q9LUE1|GGPP9_ARATH Geranylgeranyl pyrophosphate synthase 9, chloroplastic
OS=Arabidopsis thaliana GN=GGPPS9 PE=1 SV=1
Length = 360
Score = 370 bits (950), Expect = e-101, Method: Compositional matrix adjust.
Identities = 207/343 (60%), Positives = 264/343 (76%), Gaps = 12/343 (3%)
Query: 22 RRSNKTQPFRTLKTLPV-SLASQRPRRPVSISAVQTLEENPAPSPTFDFKSYMIQKASTV 80
RR N ++L+ V SL+S + +Q ++ + FDFK YMI+KA +V
Sbjct: 19 RRDNSISSVKSLRKRTVLSLSSALTSQDAG-HMIQPEGKSNDNNSAFDFKLYMIRKAESV 77
Query: 81 NQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMI 140
N ALD +V L P+ I E++RYSLLAGGKRVRP+LC+AAC+LVGG E+ AM AAC++EMI
Sbjct: 78 NAALDVSVPLLKPLTIQEAVRYSLLAGGKRVRPLLCIAACELVGGDEATAMSAACAVEMI 137
Query: 141 HTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKG-VSPA 199
HT SLIHDDLPCMDN LRRGKPTNH +YGED+AVLAGDALLA AFEH+ V + G V+P
Sbjct: 138 HTSSLIHDDLPCMDNADLRRGKPTNHKVYGEDMAVLAGDALLALAFEHMTVVSSGLVAPE 197
Query: 200 RIVRAIAELAKYIGADGLVAGQ-----AEK----DLGIEHLEFIHEHKTAALLEAAVVLG 250
+++RA+ ELA+ IG GLVAGQ +E+ +G+EHLEFIH HKTAALLEAA VLG
Sbjct: 198 KMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEAAAVLG 257
Query: 251 AILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLL 310
I+GGGT+ E+EKLR +ARCIGLLFQVVDDILD+TKS++ELGKTAGKD++A KLTYP+L+
Sbjct: 258 VIMGGGTEQEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTYPRLI 317
Query: 311 GIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 353
G+E S+++A+KL ++A++QL FD KA PL+ALA+YIA R N
Sbjct: 318 GLEGSREVAEKLRREAEEQLLGFDPSKAAPLVALASYIACRHN 360
>sp|Q9LIA0|GGPPB_ARATH Geranylgeranyl pyrophosphate synthase 11, chloroplastic
OS=Arabidopsis thaliana GN=At3g29430 PE=2 SV=1
Length = 357
Score = 368 bits (945), Expect = e-101, Method: Compositional matrix adjust.
Identities = 210/363 (57%), Positives = 270/363 (74%), Gaps = 21/363 (5%)
Query: 6 LAAWTQTCSIFNQASSRRSNKTQPF-----RTLKTLPVSLASQRPRRPVSISAVQTLEEN 60
+A + S+F Q RR N F RT+ +L +L+SQ + ++
Sbjct: 1 MATTLSSSSLFIQFRGRRYNSLSSFNNLQKRTVLSLSCALSSQ------GGDMIPPEGKS 54
Query: 61 PAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAAC 120
+ FDFKSYMI+KA +V+ AL+ +V L++P+ I E++RYSLLAGGKRVRP+LC+AAC
Sbjct: 55 NDRNSAFDFKSYMIRKAESVSAALNVSVPLQEPLTIQEAVRYSLLAGGKRVRPLLCIAAC 114
Query: 121 DLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDA 180
+LVGG E+ AM AAC++EMIHT SLIHDDLPCMD+ LRRGKPTNH +GED+AVLAGDA
Sbjct: 115 ELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDDADLRRGKPTNHKEFGEDMAVLAGDA 174
Query: 181 LLAYAFEHIAVCTKG-VSPARIVRAIAELAKYIGADGLVAGQAE---------KDLGIEH 230
LLA AFEH+ + G V+P R++RA+ ELAK IG GLVAGQ D+G+E
Sbjct: 175 LLALAFEHMTFVSNGLVAPERMIRAVMELAKAIGTKGLVAGQVTDLCSQGLNPDDVGLER 234
Query: 231 LEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKE 290
LEFIH HKTAALLEAA VLGAI+GGGT+ E+EKLR +ARCIGLLFQVVDDILD+T+S+KE
Sbjct: 235 LEFIHLHKTAALLEAAAVLGAIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTESTKE 294
Query: 291 LGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAY 350
LGKTAGKD++A KLTYP+L+G+E S+++A+KL ++A +QL FD +KA PL+ALA+YIA
Sbjct: 295 LGKTAGKDVMAGKLTYPRLIGLERSREVAEKLRREAAEQLLGFDSDKAAPLVALASYIAC 354
Query: 351 RQN 353
R N
Sbjct: 355 RHN 357
>sp|Q9LHR4|GGPPC_ARATH Geranylgeranyl pyrophosphate synthase 12, chloroplastic
OS=Arabidopsis thaliana GN=At3g32040 PE=2 SV=1
Length = 360
Score = 358 bits (920), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 204/357 (57%), Positives = 267/357 (74%), Gaps = 20/357 (5%)
Query: 12 TCSIFNQASSRRSNKTQPF-----RTLKTLPVSLASQRPRRPVSISAVQTLEENPAPSPT 66
+ S+F Q R+ N F RT+ +L +L SQ + + ++ + N A
Sbjct: 9 SSSLFIQTRGRKYNSILSFNNLQKRTVLSLSCALTSQGGKDMIPPKG-KSNDRNFA---- 63
Query: 67 FDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGH 126
FDFKSYMI+KA +V+ AL+ +V +DP+ I E++RYSLLAGGKRVRP+LC+AAC+LVGG
Sbjct: 64 FDFKSYMIRKAESVSMALNVSVPPQDPLAIQEAVRYSLLAGGKRVRPLLCIAACELVGGD 123
Query: 127 ESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAF 186
E+ AM AAC++EMIHT SLIHDDLPCMD+ LRRGKPTNH ++GE +AVLAGDALLA AF
Sbjct: 124 EATAMSAACAVEMIHTSSLIHDDLPCMDDADLRRGKPTNHKVFGEHMAVLAGDALLALAF 183
Query: 187 EHIAVCTKG-VSPARIVRAIAELAKYIGADGLVAGQAEK---------DLGIEHLEFIHE 236
EH+ V + G V+P R++R++ ELAK IG GLVAGQ D+G+E LEFIH
Sbjct: 184 EHMTVVSSGLVAPERMIRSVTELAKAIGTKGLVAGQVSDLCSQGLNPYDVGLERLEFIHL 243
Query: 237 HKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAG 296
HKTAALLEAA VLGAI+GGGT+ E++KLR + RCIGLLFQVVDDI+D+T+S++ELGKTAG
Sbjct: 244 HKTAALLEAAAVLGAIIGGGTEEEIQKLRKYGRCIGLLFQVVDDIIDVTESTEELGKTAG 303
Query: 297 KDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 353
KD++A KLTYP+L+G+E S+++A+KL ++A +QL FD K PL+ALA+YIA R N
Sbjct: 304 KDVMARKLTYPRLIGLERSREVAEKLRREAAEQLLGFDSNKVAPLVALASYIACRHN 360
>sp|O22043|GGPP6_ARATH Geranylgeranyl pyrophosphate synthase 6, mitochondrial
OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2
Length = 336
Score = 335 bits (860), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 172/335 (51%), Positives = 245/335 (73%), Gaps = 25/335 (7%)
Query: 44 RPRRPVSISAVQTLEEN-----PAPSPTFDFKSYMIQKASTVNQALDAA-------VSLK 91
RPR + +SA++ + + S +F SYM KA ++N+ALD + V L
Sbjct: 2 RPRYSLILSAMRLIRPSNRRLSSIASSDSEFISYMKNKAKSINKALDNSIPLCNNFVPLW 61
Query: 92 DPV-KIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDL 150
+PV ++H++MRY+LL GGKRVRP+LCL AC+LVGG ES AMPAAC++EMIH SLI DDL
Sbjct: 62 EPVLEVHKAMRYTLLPGGKRVRPMLCLVACELVGGQESTAMPAACAVEMIHAASLILDDL 121
Query: 151 PCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEH-IAVCTKGVSPARIVRAIAELA 209
PCMD+D LRRGKPTNH ++GE ++LA +AL + A + +A + GV+ R++RA+ E+A
Sbjct: 122 PCMDDDSLRRGKPTNHKVFGEKTSILASNALRSLAVKQTLASTSLGVTSERVLRAVQEMA 181
Query: 210 KYIGADGLVAGQA-----------EKDLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTD 258
+ +G +GLVAGQA +D + +LE +H HKTA L+EAA V+GAI+GGG+D
Sbjct: 182 RAVGTEGLVAGQAADLAGERMSFKNEDDELRYLELMHVHKTAVLVEAAAVVGAIMGGGSD 241
Query: 259 NEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKL 318
E+E+L+++ARC+GL+FQV+DD+LD TKSS+ELGKTAGKDL+ KLTYPK++G++ +++
Sbjct: 242 EEIERLKSYARCVGLMFQVMDDVLDETKSSEELGKTAGKDLITGKLTYPKVMGVDNAREY 301
Query: 319 ADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 353
A +LN++AQ+ L FD +K VPL++LA+YI RQN
Sbjct: 302 AKRLNREAQEHLQGFDSDKVVPLLSLADYIVKRQN 336
>sp|P48368|CRTE_CYAPA Geranylgeranyl pyrophosphate synthase homolog OS=Cyanophora
paradoxa GN=crtE PE=3 SV=1
Length = 300
Score = 313 bits (801), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 151/295 (51%), Positives = 206/295 (69%), Gaps = 8/295 (2%)
Query: 66 TFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGG 125
F+ +Y+ ++ V L+ ++ +P I++S+RYSL AGGKR+RP+LCLA+C+L GG
Sbjct: 7 NFNLLTYLYERKEIVEDTLNKSIPRGNPTFIYDSIRYSLSAGGKRIRPILCLASCELAGG 66
Query: 126 HESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYA 185
MA+P AC++EMIHTMSLIHDDLP MDND RRGKPTNH IYGED+A+LAGDALLAYA
Sbjct: 67 TMEMALPTACALEMIHTMSLIHDDLPAMDNDSYRRGKPTNHIIYGEDLAILAGDALLAYA 126
Query: 186 FEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQ-------AEKDLGIEHLEFIHEHK 238
FE IA TK V IV+ IA++A + GLV GQ + D +E L FIH HK
Sbjct: 127 FEFIATQTKNVPADLIVKVIAQVAHSVTTSGLVGGQIIDLSSEGKSDTTLETLNFIHIHK 186
Query: 239 TAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKD 298
T ALLEAAV+ GA+L G + ++ + +A+ IGL FQ++DD+LD+ + ++LGK+ GKD
Sbjct: 187 TGALLEAAVLSGALLAGAKEKDMNRFLRYAQNIGLAFQIIDDVLDIISTEEKLGKSIGKD 246
Query: 299 LVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 353
L K TYP G+EES K A+ L ++A++++ FD KA+PLIA+A++I R N
Sbjct: 247 LKTQKATYPSFWGVEESIKQAELLVEEAKEEILYFDN-KAIPLIAIADFIVNRNN 300
>sp|Q39108|GGR_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase small subunit,
chloroplastic OS=Arabidopsis thaliana GN=GGR PE=1 SV=2
Length = 326
Score = 233 bits (594), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 120/271 (44%), Positives = 173/271 (63%), Gaps = 10/271 (3%)
Query: 36 LPVSLASQRPRRP------VSISAVQTLEENPAPSPTFDFKSYMIQKASTVNQALDAAVS 89
+P+S P +P +S +A+++ + S FD ++Y + +NQ LD A+
Sbjct: 8 IPLSSFCSLPEKPHTLPMKLSPAAIRSSSSSAPGSLNFDLRTYWTTLITEINQKLDEAIP 67
Query: 90 LKDPVKIHESMRYSLLA-GGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHD 148
+K P I+E+MRYS+LA G KR PV+C+AAC+L GG A P AC++EM+H SLIHD
Sbjct: 68 VKHPAGIYEAMRYSVLAQGAKRAPPVMCVAACELFGGDRLAAFPTACALEMVHAASLIHD 127
Query: 149 DLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKG--VSPARIVRAIA 206
DLPCMD+DP+RRGKP+NHT+YG +A+LAGDAL AF+HI T V A I+R I
Sbjct: 128 DLPCMDDDPVRRGKPSNHTVYGSGMAILAGDALFPLAFQHIVSHTPPDLVPRATILRLIT 187
Query: 207 ELAKYIGADGLVAGQ-AEKDLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLR 265
E+A+ +G+ G+ AGQ + + G L F+ E K A+ E + V G +LGG T++E++ LR
Sbjct: 188 EIARTVGSTGMAAGQYVDLEGGPFPLSFVQEKKFGAMGECSAVCGGLLGGATEDELQSLR 247
Query: 266 TFARCIGLLFQVVDDILDLTKSSKELGKTAG 296
+ R +G+L+QVVDDI + K S + G G
Sbjct: 248 RYGRAVGMLYQVVDDITEDKKKSYDGGAEKG 278
>sp|Q08291|ISPA_GEOSE Farnesyl diphosphate synthase OS=Geobacillus stearothermophilus
PE=1 SV=1
Length = 297
Score = 219 bits (559), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 123/271 (45%), Positives = 172/271 (63%), Gaps = 14/271 (5%)
Query: 81 NQALDAAVS-----LKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAAC 135
QA++ A+S L+ P K+ ++M YSL AGGKR+RP+L L+ +G ++ +P AC
Sbjct: 14 KQAVETALSRYIERLEGPAKLKKAMAYSLEAGGKRIRPLLLLSTVRALGKDPAVGLPVAC 73
Query: 136 SIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIA-VCTK 194
+IEMIHT SLIHDDLP MDND LRRGKPTNH ++GE +A+LAGD LL YAF+ I + +
Sbjct: 74 AIEMIHTYSLIHDDLPSMDNDDLRRGKPTNHKVFGEAMAILAGDGLLTYAFQLITEIDDE 133
Query: 195 GVSPARIVRAIAELAKYIGADGLVAGQAE------KDLGIEHLEFIHEHKTAALLEAAVV 248
+ P+ +R I LAK G +G+VAGQA K L + LE+IH HKT +L+ +V
Sbjct: 134 RIPPSVRLRLIERLAKAAGPEGMVAGQAADMEGEGKTLTLSELEYIHRHKTGKMLQYSVH 193
Query: 249 LGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPK 308
GA++GG + +L FA +GL FQ+ DDILD+ + +++GK G D +K TYP
Sbjct: 194 AGALIGGADARQTRELDEFAAHLGLAFQIRDDILDIEGAEEKIGKPVGSDQSNNKATYPA 253
Query: 309 LLGIEESK-KLADKLNKDAQQQLSEFDQEKA 338
LL + +K KLA + AQ+ L D + A
Sbjct: 254 LLSLAGAKEKLAFHIEA-AQRHLRNADVDGA 283
>sp|O66126|ISPA_MICLU Farnesyl diphosphate synthase OS=Micrococcus luteus GN=fps PE=3
SV=1
Length = 291
Score = 198 bits (504), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 115/267 (43%), Positives = 156/267 (58%), Gaps = 15/267 (5%)
Query: 95 KIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMD 154
++HE++ YSL AGGKR+RP+L L D +GG+ +P ++EMIHT SLIHDDLP MD
Sbjct: 30 RLHEAINYSLSAGGKRIRPLLVLTTLDSLGGNAHDGLPFGIALEMIHTYSLIHDDLPAMD 89
Query: 155 NDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGA 214
ND RRGK TNH + E A+LAGDALL AF+ + ++ + I L+ G+
Sbjct: 90 NDDYRRGKLTNHKRFDEATAILAGDALLTDAFQ--CILNTQLNAEIKLSLINLLSTASGS 147
Query: 215 DGLVAGQA------EKDLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFA 268
+G+V GQ K L + LE IH HKT L+ AA+V I+ D ++E+L
Sbjct: 148 NGMVYGQMLDMQGEHKTLTLNELERIHIHKTGELIRAAIVSAGIIMNFNDAQIEQLNIIG 207
Query: 269 RCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKK-LADKLNK--D 325
+ +GL+FQ+ DDILD+ S + +GKT G DL DK TY LLG+E SK+ L DKL + D
Sbjct: 208 KNVGLMFQIKDDILDVEGSFENIGKTVGSDLNNDKSTYVSLLGLEASKQLLNDKLTETYD 267
Query: 326 AQQQLSEFDQEKAVPLIALANYIAYRQ 352
A + L + L L YI R
Sbjct: 268 ALKTLQPINDN----LKTLITYIVERN 290
>sp|P54383|ISPA_BACSU Farnesyl diphosphate synthase OS=Bacillus subtilis (strain 168)
GN=ispA PE=3 SV=2
Length = 296
Score = 196 bits (498), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 126/296 (42%), Positives = 173/296 (58%), Gaps = 9/296 (3%)
Query: 66 TFDFKSYMIQKASTVNQALDAAVSLKD-PVKIHESMRYSLLAGGKRVRPVLCLAACDLVG 124
T S++ + T+ L D P + +SM YSL AGGKR+RP++ LA + G
Sbjct: 2 TNKLTSFLADRKKTIENQLSVYTEKLDMPDSLKKSMLYSLQAGGKRLRPLIVLAVLNAYG 61
Query: 125 GHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAY 184
E +P C++EMIHT SLIHDDLPCMD+D LRRGKPTNH ++GE AVLAGD LL
Sbjct: 62 KSEKDGIPVGCAVEMIHTYSLIHDDLPCMDDDDLRRGKPTNHKVFGEATAVLAGDGLLTE 121
Query: 185 AFEHIAV-CTKGVSPARIVRAIAELAKYIGADGLVAGQA------EKDLGIEHLEFIHEH 237
+F+ I + VS + +R + EL G +G+V GQ + + +E LE IHE
Sbjct: 122 SFKLITSHVSDEVSAEKRLRLVNELISAAGTEGMVGGQVADMEAENRQVTLEELESIHER 181
Query: 238 KTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGK 297
KTA LL V+ GAIL + ++E LRTF+ IG+ FQ+ DDILDL S +++GK G
Sbjct: 182 KTAKLLGFCVIAGAILADAPEEDIETLRTFSSHIGIGFQIRDDILDLEGSEEKIGKRVGS 241
Query: 298 DLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 353
D DK TYP LL +E +K D K+A++ + +K + L L + IA R +
Sbjct: 242 DTTNDKSTYPSLLSLEGAKHKLDVHIKEAKRLIGGLSLQKDL-LYELCDLIAARDH 296
>sp|P45204|ISPA_HAEIN Farnesyl diphosphate synthase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ispA PE=3 SV=1
Length = 295
Score = 174 bits (442), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 124/298 (41%), Positives = 169/298 (56%), Gaps = 19/298 (6%)
Query: 69 FKSYMIQKASTVNQALDAAVSLKDPVKIH-----ESMRYSLLAGGKRVRPVLCLAACDLV 123
F + Q + +N+ L+A + ++ H E+M+Y+LL GGKRVRP L A ++
Sbjct: 4 FSEELQQVQTRINRFLEAQF---EGIESHNAPLLEAMKYALLLGGKRVRPFLVYATGQML 60
Query: 124 GGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLA 183
G + AA +IE IH SLIHDDLP MD+D LRRG PT H + E A+LAGDAL +
Sbjct: 61 GAEKQTLDYAAAAIEAIHAYSLIHDDLPAMDDDNLRRGHPTCHIQFDEATAILAGDALQS 120
Query: 184 YAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQA------EKDLGIEHLEFIHEH 237
+AFE I T +S + + I LA+ G G+ GQ+ K + + LE IH +
Sbjct: 121 FAFE-ILTKTPNISTEQKLALIQILAQGAGVQGMCLGQSLDLISEHKQISLSELELIHRN 179
Query: 238 KTAALLEAAVVLGAILG-GGTDNEVEK-LRTFARCIGLLFQVVDDILDLTKSSKELGKTA 295
KT ALL AA+ LG I TD +E+ L +A IGL FQV DDILD+ S E+GK
Sbjct: 180 KTGALLIAALKLGFICSPHFTDKRLEQSLTQYAEAIGLAFQVQDDILDIEGDSAEIGKQV 239
Query: 296 GKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 353
G DL DK TYPKLLG+ +K+ A L + A +L + + V ALA +I R++
Sbjct: 240 GADLDLDKSTYPKLLGLSGAKQKAQDLYQSALSELEKIPFDTTVR--ALAEFIITRKS 295
>sp|P57537|ISPA_BUCAI Farnesyl diphosphate synthase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=ispA PE=3 SV=1
Length = 282
Score = 156 bits (395), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 144/251 (57%), Gaps = 12/251 (4%)
Query: 98 ESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDP 157
++M+YS+ +G KR+R L + D+ + + + +IE IH+ SLIHDDLPCMDND
Sbjct: 34 KAMKYSVFSGSKRLRSSLIYSTGDVFKVNITTLDVISTAIEFIHSYSLIHDDLPCMDNDN 93
Query: 158 LRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIA-VCTKGVSPARIVRAIAELAKYIGADG 216
RRGK + H YGE ++LAGDAL + AF ++ VS + ++ I+EL+ IG+ G
Sbjct: 94 FRRGKISCHVKYGESTSLLAGDALQSLAFNILSNSFMPNVSNLKRIKMISELSYSIGSSG 153
Query: 217 LVAGQ------AEKDLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEV-EKLRTFAR 269
+ GQ +KD+ + LE I+ +KT+ L+ +AV L + L F+
Sbjct: 154 MCMGQNLDLEAEKKDVNLSELEIINLYKTSFLMRSAVRLVYFSSNNFSKSILSILDLFSI 213
Query: 270 CIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQ 329
IGL FQ+ DDILD K S KT K ++ K TYP ++G++ES+K +L+K +
Sbjct: 214 SIGLAFQIQDDILDFKKDS---VKTDNKKIIK-KHTYPLIIGLDESRKKIKQLHKKSFLA 269
Query: 330 LSEFDQEKAVP 340
L+ ++ ++P
Sbjct: 270 LNSLKKKISIP 280
>sp|P22939|ISPA_ECOLI Farnesyl diphosphate synthase OS=Escherichia coli (strain K12)
GN=ispA PE=1 SV=1
Length = 299
Score = 155 bits (392), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 114/264 (43%), Positives = 147/264 (55%), Gaps = 10/264 (3%)
Query: 98 ESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDP 157
E+M+Y L GGKR+RP L A + G + A ++E IH SLIHDDLP MD+D
Sbjct: 34 ETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDD 93
Query: 158 LRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVC-TKGVSPARIVRAIAELAKYIGADG 216
LRRG PT H +GE A+LAGDAL AF ++ VS + I+ELA G G
Sbjct: 94 LRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAG 153
Query: 217 LVAGQA------EKDLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNE-VEKLRTFAR 269
+ GQA K + ++ LE IH HKT AL+ AAV LGA+ G + L +A
Sbjct: 154 MCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAE 213
Query: 270 CIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQ 329
IGL FQV DDILD+ + LGK G D K TYP LLG+E+++K A L DA+Q
Sbjct: 214 SIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQS 273
Query: 330 LSEFDQEK--AVPLIALANYIAYR 351
L + ++ L ALA+YI R
Sbjct: 274 LKQLAEQSLDTSALEALADYIIQR 297
>sp|Q45220|ISPA_BRAJA Probable farnesyl diphosphate synthase OS=Bradyrhizobium japonicum
(strain USDA 110) GN=fppS PE=3 SV=1
Length = 332
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 112/296 (37%), Positives = 164/296 (55%), Gaps = 18/296 (6%)
Query: 72 YMIQKASTVNQALDAAVSLKD--PVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESM 129
+M A V +AL + +D ++ +MRY+ L GGKR R +LCLAA L M
Sbjct: 36 WMQDGAKRVEEALARLLCAEDDGETELMAAMRYATLHGGKRTRALLCLAAGALADTPAHM 95
Query: 130 AMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHI 189
+IEM+H +L+HDDLP MD+D LRRG PT H +GE A+L GDAL A+AF +
Sbjct: 96 LDDVGAAIEMMHACTLVHDDLPAMDDDVLRRGLPTVHVKFGEATAILVGDALQAHAFLTL 155
Query: 190 A-VCTKGVSPARIVRAIAELAKYIGADGLVAGQA-EKDLGIEHLEF-----IHEHKTAAL 242
A + G SP +VR ELA+ + A+G GQA + L +H+E +H K+ AL
Sbjct: 156 ASLNAPGDSPIALVR---ELAQAVSAEGAAGGQAIDLSLVGKHVELDRIVAMHRMKSGAL 212
Query: 243 LEAAVVLGAILGGGTDNEVEKLRT----FARCIGLLFQVVDDILDLTKSSKELGKTAGKD 298
+ A+V +GA+ G + L ++ C GL QV+DDILD+T + LGKT GKD
Sbjct: 213 VRASVRMGALCAVGVNAAHAALYCALDHYSACFGLALQVIDDILDVTADTAALGKTPGKD 272
Query: 299 LVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFD--QEKAVPLIALANYIAYRQ 352
A K T ++G++E+++ A L +DA + ++ E+ LI AN ++
Sbjct: 273 AAAQKPTCASIMGLQEARQFALDLLRDAGEAIAPLGPRAERLAQLIQRANAYLFKH 328
>sp|O66952|ISPA_AQUAE Farnesyl diphosphate synthase OS=Aquifex aeolicus (strain VF5)
GN=ispA PE=3 SV=1
Length = 262
Score = 153 bits (386), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 128/216 (59%), Gaps = 3/216 (1%)
Query: 80 VNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEM 139
+ + L+ + + P ++ E+M+Y L GKR+RP+ +A +GG+E A+ IE+
Sbjct: 11 IEKRLNEILKPEGPEELIEAMKYYPLQKGKRIRPLFTVAVASALGGNEDDAITVGSGIEL 70
Query: 140 IHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAV--CTKGVS 197
IH SLIHDDLPCMDND RRG PT H +GE +A+LAGDALL Y FE ++ K +S
Sbjct: 71 IHNYSLIHDDLPCMDNDVWRRGLPTCHIKFGEAMALLAGDALLTYTFEVLSQRENYKTLS 130
Query: 198 PARIVRAIAELAKYIGADGLVAGQAEKDLGIEHLEFIHEHKTAALLEAAVVLGAILGGGT 257
I+ +A+ G++G+V GQ G E L + KT AL EA + GA++
Sbjct: 131 CEEILEINKIIAQKAGSNGMVGGQVLDIKGYEDLYEVSVKKTGALFEACFMCGAVVAKRR 190
Query: 258 DNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGK 293
+ ++++ + R +GLLFQ+VDD LD ++LG+
Sbjct: 191 EK-LKEMESIGRKVGLLFQMVDDYLDKDGFYEKLGE 225
>sp|P39464|GGPS_SULAC Geranylgeranyl diphosphate synthase OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=gds PE=1 SV=1
Length = 330
Score = 149 bits (377), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 136/244 (55%), Gaps = 12/244 (4%)
Query: 69 FKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHES 128
F +Y + ++VN + + +S P K++E+ + +GGKR+RP++ + DL GG
Sbjct: 4 FDNYFNEIVNSVNDIIKSYISGDVP-KLYEASYHLFTSGGKRLRPLILTISSDLFGGQRE 62
Query: 129 MAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEH 188
A A +IE++HT +L+HDD+ MD D +RRG PT H YG +A+LAGD L A AF+
Sbjct: 63 RAYYAGAAIEVLHTFTLVHDDI--MDQDNIRRGLPTVHVKYGLPLAILAGDLLHAKAFQL 120
Query: 189 IAVCTKGVSPARIVRAIAELAKYIGADGLVAGQA-----EKDLGIEHLEFIH--EHKTAA 241
+ +G+ I++A + I + GQA E + I+ E++ KTAA
Sbjct: 121 LTQALRGLPSETIIKAFDIFTRSIII--ISEGQAVDMEFEDRIDIKEQEYLDMISRKTAA 178
Query: 242 LLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVA 301
L A+ +GA++ G DN+V + F +G+ FQ+VDDIL LT KELGK D+
Sbjct: 179 LFSASSSIGALIAGANDNDVRLMSDFGTNLGIAFQIVDDILGLTADEKELGKPVFSDIRE 238
Query: 302 DKLT 305
K T
Sbjct: 239 GKKT 242
>sp|Q8K9A0|ISPA_BUCAP Farnesyl diphosphate synthase OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=ispA PE=3 SV=1
Length = 294
Score = 144 bits (364), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 140/263 (53%), Gaps = 13/263 (4%)
Query: 90 LKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDD 149
+D V + +M+YS L+GGKR+R L A + + + + ++E++H+ SLIHDD
Sbjct: 27 FQDSV-LFRAMKYSTLSGGKRLRACLIYATGETFQVNIAALDVISAAVELVHSYSLIHDD 85
Query: 150 LPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTK-GVSPARIVRAIAEL 208
LPC+DND RRGK + H YGE+ A+LAGDAL AF ++ GV + ++ IAE
Sbjct: 86 LPCIDNDYFRRGKISCHIKYGENFALLAGDALQGLAFNILSNSNMPGVHDSIRLKMIAEF 145
Query: 209 AKYIGADGLVAGQA------EKDLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEV- 261
+ IG G+ GQ K + I LE I+ +KTA L+ ++ L EV
Sbjct: 146 SNAIGYSGMCIGQMLDLEKERKKINISELEKINLYKTAFLIRCSIRLAYFASNNFSKEVL 205
Query: 262 EKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADK 321
L F+ IGL FQ+ DDILDL K+L K K TYP L+G+++SK +
Sbjct: 206 FILDKFSVSIGLAFQIQDDILDLKNDIKKLESKRNK----TKNTYPLLIGLKKSKIKIKE 261
Query: 322 LNKDAQQQLSEFDQEKAVPLIAL 344
L K+A L + V ++ L
Sbjct: 262 LYKEAFFTLEILKKNFNVNILKL 284
>sp|Q58270|IDSA_METJA Short chain isoprenyl diphosphate synthase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=idsA PE=3 SV=1
Length = 327
Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 137/245 (55%), Gaps = 22/245 (8%)
Query: 69 FKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHES 128
F ++QK +++ L V D K++ + ++ L AGGKR+RP L + L
Sbjct: 13 FDKNILQK---IDEELKTYVDKDD--KLYNASKHLLFAGGKRIRPYLTVVTYMLKKDDIE 67
Query: 129 MAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEH 188
+PAA ++E+IH +LIHDD+ MDND RRGKPT H +YGE +A+LAGD L A AFE
Sbjct: 68 EVLPAAAAVELIHNYTLIHDDI--MDNDDERRGKPTVHVVYGEPMAILAGDLLYAKAFEA 125
Query: 189 IAVCTKGVSPARIVRAIAELAKYIGADGLVAGQAEKDLGIE--------HLEFIHEHKTA 240
++ +++ +++ + GQA D+ E +L+ I + KT
Sbjct: 126 VSRIKDNKKAHEVLKILSK-----ACVEVCEGQA-MDMEFENYYPTMEEYLDMIRK-KTG 178
Query: 241 ALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLV 300
ALLEA+V +GA++ + E E L+ +A+ IGL FQ+ DD+LDL K+LGK G D+
Sbjct: 179 ALLEASVGIGAVMADCNEEEREALKEYAKRIGLTFQIQDDVLDLIGDQKKLGKPVGSDIR 238
Query: 301 ADKLT 305
K T
Sbjct: 239 EGKKT 243
>sp|P95999|GGPS_SULSO Geranylgeranyl diphosphate synthase OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=gds
PE=3 SV=2
Length = 332
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 150/289 (51%), Gaps = 24/289 (8%)
Query: 68 DFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLL-AGGKRVRPVLCLAACDLVGGH 126
D Y + + VN + V K K E + L AGGKR+RP++ +++ DL+GG
Sbjct: 5 DLSLYFNEIVNNVNFRIKNFV--KSNFKTLEEASFHLFTAGGKRLRPLVLVSSSDLIGGD 62
Query: 127 ESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAF 186
A AA ++E++H +L+HDD+ MDND LRRG PT H +GE +A+LAGD L A AF
Sbjct: 63 RERAYKAAAAVEILHNFTLVHDDI--MDNDGLRRGLPTVHVKWGEPMAILAGDYLHAKAF 120
Query: 187 EHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQA-----EKDLGIEHLEFIH--EHKT 239
E + KG+ +A + I + + GQA E L + E+I + KT
Sbjct: 121 EALNEALKGLDGNTFYKAFSIFITSI--EIISEGQAMDMSFENRLDVTEEEYIQMIKGKT 178
Query: 240 AALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDL 299
A L + LG I+ D+ V+KL + +G+ FQ+VDDIL + KELGK D+
Sbjct: 179 AMLFSCSAALGGIINKANDDVVKKLTEYGLNLGISFQIVDDILGIIGDEKELGKPIYSDI 238
Query: 300 VADKLTYPKLLGIEESKKLADKL------NKDAQQQLSEFDQEKAVPLI 342
K T + + E+ + K+ NK+A+++ D E+A +I
Sbjct: 239 REGKKTILVIKTLSEATEDEKKILVSTLGNKEAKKE----DLERASEII 283
>sp|Q53479|IDSA_METTM Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
marburgensis (strain DSM 2133 / 14651 / NBRC 100331 /
OCM 82 / Marburg) GN=idsA PE=1 SV=3
Length = 325
Score = 139 bits (349), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 137/237 (57%), Gaps = 24/237 (10%)
Query: 93 PVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPC 152
P + ++ + + AGGK++RP L L +C+ VGG+ A A +IE+IHT SLIHDD+
Sbjct: 28 PDTLLKASEHLITAGGKKIRPSLALLSCEAVGGNPEDAAGVAAAIELIHTFSLIHDDI-- 85
Query: 153 MDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYI 212
MD+D +RRG+P+ H I+GE +A+LAGD L + AFE AV G S R+ A+A +
Sbjct: 86 MDDDEMRRGEPSVHVIWGEPMAILAGDVLFSKAFE--AVIRNGDSE-RVKDALA-----V 137
Query: 213 GADGLV---AGQAEKDLGIE---------HLEFIHEHKTAALLEAAVVLGAILGGGTDNE 260
D V GQA D+G E ++E I++ A + AA GAI+GG ++ E
Sbjct: 138 VVDSCVKICEGQA-LDMGFEERLDVTEDEYMEMIYKKTAALIA-AATKAGAIMGGASERE 195
Query: 261 VEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKK 317
VE L + + IGL FQ+ DD LD+ + LGK G D+ K+T + +EE+ +
Sbjct: 196 VEALEDYGKFIGLAFQIHDDYLDVVSDEESLGKPVGSDIAEGKMTLMVVKALEEASE 252
>sp|P55539|ISPA_RHISN Probable farnesyl diphosphate synthase OS=Rhizobium sp. (strain
NGR234) GN=NGR_a02750 PE=3 SV=1
Length = 332
Score = 138 bits (348), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 103/262 (39%), Positives = 145/262 (55%), Gaps = 18/262 (6%)
Query: 72 YMIQKASTVNQALDAAVSLKD--PVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESM 129
+M A V QAL + +D ++ +MRY+ L GGKR R +LCLAA L +
Sbjct: 36 WMQNGAKRVEQALARLLCAEDHGETELMAAMRYATLHGGKRTRALLCLAAGALADTPAHI 95
Query: 130 AMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHI 189
+IEM+H +L+HDDLP MD+D LRRG PT H +GE A+L GDAL A+AF +
Sbjct: 96 LDDVGAAIEMMHACTLVHDDLPAMDDDVLRRGLPTVHVKFGEATAILVGDALQAHAFLTL 155
Query: 190 A-VCTKGVSPARIVRAIAELAKYIGADGLVAGQAEKDLGI--EHLEF-----IHEHKTAA 241
A + G + +VR ELA+ + A+G GQA DL + +H+E +H K A
Sbjct: 156 ASLDAPGDNRIALVR---ELAQAVSAEGAAGGQA-MDLSLVGKHVELDRIVAMHRMKCGA 211
Query: 242 LLEAAVVLGAILGGGTDNEVEKLRT----FARCIGLLFQVVDDILDLTKSSKELGKTAGK 297
L+ A+V +GA+ D L ++ C GL QVVDDILD T + LGKT GK
Sbjct: 212 LVRASVRMGALCAIAEDAADATLYCALDHYSACFGLALQVVDDILDATADTATLGKTPGK 271
Query: 298 DLVADKLTYPKLLGIEESKKLA 319
D A K T ++G++ +++ A
Sbjct: 272 DAAAQKPTCASIMGLQAARQFA 293
>sp|P17060|CRTE_RHOCB Geranylgeranyl pyrophosphate synthase OS=Rhodobacter capsulatus
(strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=crtE PE=3
SV=1
Length = 289
Score = 136 bits (342), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/243 (37%), Positives = 134/243 (55%), Gaps = 8/243 (3%)
Query: 78 STVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAM--PAAC 135
S + +AL + P + ++ Y + GG R+RP + L + L G + A+ AA
Sbjct: 9 SALVKALSPEALGESPPLLAAALPYGVFPGGARIRPTI-LVSVALACGDDCPAVTDAAAV 67
Query: 136 SIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKG 195
++E++H SL+HDDLP DN +RRGKP+ H Y E +AVLAGD+LL FE +A
Sbjct: 68 ALELMHCASLVHDDLPAFDNADIRRGKPSLHKAYNEPLAVLAGDSLLIRGFEVLAD-VGA 126
Query: 196 VSPARIVRAIAELAKYIGA-DGLVAGQAEKDLGIEHLEFIHEHKTAALLEAAVVLGAILG 254
V+P R ++ I++L + GA G+ AGQA + L H+ KT AL AA +GAI
Sbjct: 127 VNPDRALKLISKLGQLSGARGGICAGQAWESESKVDLAAYHQAKTGALFIAATQMGAIAA 186
Query: 255 GGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEE 314
G E E IG FQ+ DD+ D S++ +GK AG+D+ ++ K +GIE
Sbjct: 187 G---YEAEPWFDLGMRIGSAFQIADDLKDALMSAEAMGKPAGQDIANERPNAVKTMGIEG 243
Query: 315 SKK 317
++K
Sbjct: 244 ARK 246
>sp|O26156|IDSA_METTH Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=idsA PE=3 SV=1
Length = 325
Score = 132 bits (332), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 88/214 (41%), Positives = 122/214 (57%), Gaps = 24/214 (11%)
Query: 104 LLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKP 163
+ AGGK++RP L L + + VGG A A +IE+IHT SLIHDD+ MD+D +RRG+P
Sbjct: 39 ITAGGKKIRPSLALLSSEAVGGDPGDAAGVAAAIELIHTFSLIHDDI--MDDDEIRRGEP 96
Query: 164 TNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLV---AG 220
H ++GE +A+LAGD L + AFE AV G S + A+A + D V G
Sbjct: 97 AVHVLWGEPMAILAGDVLFSKAFE--AVIRNGDSEM-VKEALA-----VVVDSCVKICEG 148
Query: 221 QAEKDLGIE---------HLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCI 271
QA D+G E ++E I++ A + AA GAI+GGG+ E+ L + RCI
Sbjct: 149 QA-LDMGFEERLDVTEEEYMEMIYKKTAALIA-AATKAGAIMGGGSPQEIAALEDYGRCI 206
Query: 272 GLLFQVVDDILDLTKSSKELGKTAGKDLVADKLT 305
GL FQ+ DD LD+ + LGK G D+ K+T
Sbjct: 207 GLAFQIHDDYLDVVSDEESLGKPVGSDIAEGKMT 240
>sp|P54976|CRTE_RHOS4 Geranylgeranyl pyrophosphate synthase OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=crtE PE=3 SV=3
Length = 288
Score = 131 bits (330), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 85/234 (36%), Positives = 123/234 (52%), Gaps = 7/234 (2%)
Query: 93 PVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHE-SMAMPAACSIEMIHTMSLIHDDLP 151
P K+ ++ Y++ GG R+RP L L+ G +++ AA ++E+IH SL+HDDLP
Sbjct: 24 PSKLATALDYAVTPGGARIRPTLLLSVATACGDDRPALSDAAAVALELIHCASLVHDDLP 83
Query: 152 CMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKY 211
C D+ +RRGKPT H Y E +A+L GD+L+ FE +A P R ++ + LA
Sbjct: 84 CFDDAEIRRGKPTVHRAYSEPLAILTGDSLIVMGFEVLARAAAD-QPQRALQLVTALAVR 142
Query: 212 IGAD-GLVAGQAEKDLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARC 270
G G+ AGQ + +L H KT AL AA +GAI G E E
Sbjct: 143 TGMPMGICAGQGWESESQINLSAYHRAKTGALFIAATQMGAIAAG---YEAEPWEELGAR 199
Query: 271 IGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIE-ESKKLADKLN 323
IG FQV DD+ D ++ LGK AG+D + + + G+E +K+L D L
Sbjct: 200 IGEAFQVADDLRDALCDAETLGKPAGQDEIHARPNAVREYGVEGAAKRLKDILG 253
>sp|P21684|CRTE_PANAN Geranylgeranyl pyrophosphate synthase OS=Pantoea ananas GN=crtE
PE=3 SV=1
Length = 302
Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 125/216 (57%), Gaps = 12/216 (5%)
Query: 99 SMRYSLLAGGKRVRPVLCLAACDLVG---GHESMAMPAACSIEMIHTMSLIHDDLPCMDN 155
+MR LA GKR+RP+L L +G H+ + + AC++EM+H SLI DD+PCMD+
Sbjct: 43 AMREGALAPGKRIRPMLLLLTARDLGCAVSHDGL-LDLACAVEMVHAASLILDDMPCMDD 101
Query: 156 DPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGAD 215
LRRG+PT H+ YGE VA+LA ALL+ AF IA G++P RA++EL+ IG
Sbjct: 102 AKLRRGRPTIHSHYGEHVAILAAVALLSKAFGVIAD-ADGLTPLAKNRAVSELSNAIGMQ 160
Query: 216 GLVAGQ------AEKDLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFAR 269
GLV GQ +K E + + KT+ L A++ + +I+ + + L F+
Sbjct: 161 GLVQGQFKDLSEGDKPRSAEAILMTNHFKTSTLFCASMQMASIVANASSEARDCLHRFSL 220
Query: 270 CIGLLFQVVDDILD-LTKSSKELGKTAGKDLVADKL 304
+G FQ++DD+ D +T + K+ + AGK + + L
Sbjct: 221 DLGQAFQLLDDLTDGMTDTGKDSNQDAGKSTLVNLL 256
>sp|Q75HZ9|SPS2_ORYSJ Solanesyl-diphosphate synthase 2, chloroplastic OS=Oryza sativa
subsp. japonica GN=SPS2 PE=1 SV=2
Length = 403
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 140/258 (54%), Gaps = 23/258 (8%)
Query: 80 VNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCL----AACDLVG------GHESM 129
+N L + V ++PV + + + AGGKR+RP L A +L G H+ +
Sbjct: 95 LNNNLKSLVGAENPVLVSAAEQI-FGAGGKRLRPALVFLVSRATAELAGLLELTTEHQRL 153
Query: 130 AMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHI 189
A IEMIHT SLIHDD+ +D+ +RRGK T H +YG VAVLAGD + A + +
Sbjct: 154 AEI----IEMIHTASLIHDDV--IDDSGMRRGKETIHQLYGTRVAVLAGDFMFAQSSWFL 207
Query: 190 AVCTKGVSPARIVRAIAELAKYIGADGLVAGQAEKDLGIEHLEFIHE--HKTAALLEAAV 247
A + +++ I+++ K + + D + +++ + +KTA+LL ++
Sbjct: 208 A----NLENIEVIKLISQVIKDFASGEIKQASTLFDCDVTLDDYLLKSYYKTASLLASST 263
Query: 248 VLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYP 307
AI G + E++ + R +GL FQVVDDILD T+S+++LGK AG DL LT P
Sbjct: 264 RSAAIFSGVSTTICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAP 323
Query: 308 KLLGIEESKKLADKLNKD 325
+ +++ KL + ++ +
Sbjct: 324 VIFALQDEPKLREIIDSE 341
>sp|Q0INZ4|SPS3_ORYSJ Probable solanesyl-diphosphate synthase 3, chloroplastic (Fragment)
OS=Oryza sativa subsp. japonica GN=SPS3 PE=3 SV=1
Length = 372
Score = 124 bits (312), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 140/258 (54%), Gaps = 23/258 (8%)
Query: 80 VNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCL----AACDLVG------GHESM 129
+N L + V ++PV + + + AGGKR+RP L A +L G H+ +
Sbjct: 64 LNNNLKSLVGAENPVLVSAAEQI-FGAGGKRLRPALVFLVSRATAELAGLLELTTEHQRL 122
Query: 130 AMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHI 189
A IEMIHT SLIHDD+ +D+ +RRGK T H +YG VAVLAGD + A + +
Sbjct: 123 AEI----IEMIHTASLIHDDV--IDDSGMRRGKETIHQLYGTRVAVLAGDFMFAQSSWFL 176
Query: 190 AVCTKGVSPARIVRAIAELAKYIGADGLVAGQAEKDLGIEHLEFIHE--HKTAALLEAAV 247
A + +++ I+++ K + + D I +++ + +KTA+L+ A+
Sbjct: 177 A----NLENIEVIKLISQVIKDFASGEIKQASTLFDCDITLDDYLLKSYYKTASLIAAST 232
Query: 248 VLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYP 307
AI G + E++ + R +GL FQVVDDILD T+S+++LGK AG DL LT P
Sbjct: 233 RSAAIFSGVSTAICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAP 292
Query: 308 KLLGIEESKKLADKLNKD 325
+ +++ +L + ++ +
Sbjct: 293 VIFALQDEPQLREIIDSE 310
>sp|Q3IPL1|GFPS_NATPD Geranylfarnesyl diphosphate synthase OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=idsA3 PE=1 SV=1
Length = 341
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/260 (37%), Positives = 134/260 (51%), Gaps = 31/260 (11%)
Query: 70 KSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVG----- 124
+S + ++ VN+A+ + ++ P +++ + RY L AGGKR+RP + L A + +
Sbjct: 8 ESAIAERREIVNEAVSEQLPVQKPERLYSASRYLLDAGGKRLRPTILLLAAESLADVEPL 67
Query: 125 -----------GHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDV 173
G E + AA SIE+I + +LIH MD+D LRRG P H Y +
Sbjct: 68 SADYRQFPSLPGDEVDVLSAAVSIEVIQSFTLIH--DDIMDDDDLRRGVPAVHREYDLET 125
Query: 174 AVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQA-------EKDL 226
A+LAGD L + AFE++ G R V A+ ELA + GQA D+
Sbjct: 126 AILAGDTLYSKAFEYM--LDTGAPAERSVEALDELATTCTE--ICEGQALDVDFENRSDV 181
Query: 227 GIE-HLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLT 285
E +LE + E KTA L AA + AIL G D VE L + IG FQ+ DD+LDLT
Sbjct: 182 TTEEYLEMV-EFKTAVLYAAAASIPAILLGSDDETVEALHGYGLDIGRAFQIQDDLLDLT 240
Query: 286 KSSKELGKTAGKDLVADKLT 305
S ELGK G DLV +K T
Sbjct: 241 APSDELGKQRGSDLVENKRT 260
>sp|Q8S948|SPS1_ARATH Solanesyl diphosphate synthase 1 OS=Arabidopsis thaliana GN=SPS1
PE=1 SV=1
Length = 406
Score = 122 bits (307), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 135/248 (54%), Gaps = 15/248 (6%)
Query: 79 TVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCL----AACDLVGGHE--SMAMP 132
T+N L + V ++PV I + + AGGKR+RP L A +L G E +
Sbjct: 97 TLNDNLLSIVGAENPVLISAAEQI-FGAGGKRMRPGLVFLVSHATAELAGLKELTTEHRR 155
Query: 133 AACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVC 192
A IEMIHT SLIHDD+ +D +RRGK T H ++G VAVLAGD + A A ++A
Sbjct: 156 LAEIIEMIHTASLIHDDV--LDESDMRRGKETVHELFGTRVAVLAGDFMFAQASWYLA-- 211
Query: 193 TKGVSPARIVRAIAELAKYIGADGLVAGQAEKDLGIEHLEFIHE--HKTAALLEAAVVLG 250
+ +++ I+++ K + + + D + E++ + +KTA+L+ A+
Sbjct: 212 --NLENLEVIKLISQVIKDFASGEIKQASSLFDCDTKLDEYLLKSFYKTASLVAASTKGA 269
Query: 251 AILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLL 310
AI + E++ F + +GL FQ+VDDILD T+S+++LGK AG DL LT P +
Sbjct: 270 AIFSRVEPDVTEQMYEFGKNLGLSFQIVDDILDFTQSTEQLGKPAGSDLAKGNLTAPVIF 329
Query: 311 GIEESKKL 318
+E +L
Sbjct: 330 ALEREPRL 337
>sp|P0A5H8|EFPP_MYCTU (2E,6E)-farnesyl diphosphate synthase OS=Mycobacterium tuberculosis
GN=Rv3398c PE=1 SV=1
Length = 359
Score = 122 bits (305), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 124/239 (51%), Gaps = 11/239 (4%)
Query: 108 GKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHT 167
GK +RP L A + G A+P A S+E++H SL+HDDL MD D RR +PT
Sbjct: 72 GKAIRPALVFVAAEAAGADPHSAIPGAVSVELVHNFSLVHDDL--MDRDEHRRHRPTVWA 129
Query: 168 IYGEDVAVLAGDALLAYAFEHIAVCTK---GVSPARIVRAIAELAKYIGADGLVAGQAEK 224
++G+ +A+LAGDA+L+ A E + C G + I A EL + AD A ++
Sbjct: 130 LWGDAMALLAGDAMLSLAHEVLLDCDSPHVGAALRAISEATRELIRGQAAD--TAFESRT 187
Query: 225 DLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDL 284
D+ ++ + E KTAAL+ A+ +GA+L G + E L + R IGL FQ+VDD+L +
Sbjct: 188 DVALDECLKMAEGKTAALMAASAEVGALLAGAPRSVREALVAYGRHIGLAFQLVDDLLGI 247
Query: 285 TKSSKELGKTAGKDLVADKLTYPKLL----GIEESKKLADKLNKDAQQQLSEFDQEKAV 339
+ GK DL + K T P G ++LA L + Q + D+ AV
Sbjct: 248 WGRPEITGKPVYSDLRSRKKTLPVTWTVAHGGSAGRRLAAWLVDETGSQTASDDELAAV 306
>sp|P0A5H9|EFPP_MYCBO (2E,6E)-farnesyl diphosphate synthase OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=Mb3431c PE=3 SV=1
Length = 359
Score = 122 bits (305), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 124/239 (51%), Gaps = 11/239 (4%)
Query: 108 GKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHT 167
GK +RP L A + G A+P A S+E++H SL+HDDL MD D RR +PT
Sbjct: 72 GKAIRPALVFVAAEAAGADPHSAIPGAVSVELVHNFSLVHDDL--MDRDEHRRHRPTVWA 129
Query: 168 IYGEDVAVLAGDALLAYAFEHIAVCTK---GVSPARIVRAIAELAKYIGADGLVAGQAEK 224
++G+ +A+LAGDA+L+ A E + C G + I A EL + AD A ++
Sbjct: 130 LWGDAMALLAGDAMLSLAHEVLLDCDSPHVGAALRAISEATRELIRGQAAD--TAFESRT 187
Query: 225 DLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDL 284
D+ ++ + E KTAAL+ A+ +GA+L G + E L + R IGL FQ+VDD+L +
Sbjct: 188 DVALDECLKMAEGKTAALMAASAEVGALLAGAPRSVREALVAYGRHIGLAFQLVDDLLGI 247
Query: 285 TKSSKELGKTAGKDLVADKLTYPKLL----GIEESKKLADKLNKDAQQQLSEFDQEKAV 339
+ GK DL + K T P G ++LA L + Q + D+ AV
Sbjct: 248 WGRPEITGKPVYSDLRSRKKTLPVTWTVAHGGSAGRRLAAWLVDETGSQTASDDELAAV 306
>sp|Q8PW34|GGPP_METMA Geranylgeranyl diphosphate synthase OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=MM_1767 PE=3 SV=1
Length = 324
Score = 121 bits (304), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 89/252 (35%), Positives = 140/252 (55%), Gaps = 15/252 (5%)
Query: 75 QKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAA 134
++S V+ A+D + + P +++++ RY + AGGKR+RP + + A + VG + +PAA
Sbjct: 12 NRSSHVDAAIDELLPVTRPEELYKASRYLVDAGGKRLRPAVLILAAEAVGSNLRSVLPAA 71
Query: 135 CSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTK 194
++E++H +LIH MD D +RRG P H +GE A+LAGD L + AFE ++
Sbjct: 72 VAVELVHNFTLIH--DDIMDRDDIRRGMPAVHVKWGEAGAILAGDTLYSKAFEILSKVEN 129
Query: 195 GVSPARIVRAIAELAKYIGADGLVAGQA--------EKDLGIEHLEFIHEHKTAALLEAA 246
P R+++ + L+K + GQ +K E+LE + E KT+ L AA
Sbjct: 130 --EPVRVLKCMDVLSK--TCTEICEGQWLDMDFETRKKVTESEYLEMV-EKKTSVLYAAA 184
Query: 247 VVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTY 306
+GA+LGG +D E L + R IG+ FQ+ DD+LD+T + LGK G DL+ K T
Sbjct: 185 AKIGALLGGASDEVAEALSEYGRLIGIGFQMYDDVLDMTAPEEVLGKVRGSDLMEGKYTL 244
Query: 307 PKLLGIEESKKL 318
+ E+ KL
Sbjct: 245 IVINAFEKGVKL 256
>sp|P22873|CRTE_ESCVU Geranylgeranyl pyrophosphate synthase OS=Escherichia vulneris
GN=crtE PE=3 SV=1
Length = 307
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 119/215 (55%), Gaps = 10/215 (4%)
Query: 99 SMRYSLLAGGKRVRPVL-CLAACDL-VGGHESMAMPAACSIEMIHTMSLIHDDLPCMDND 156
+MR ++A GKR+RP+L LAA DL G + AC++E+ HT SL+ DD+PCMDN
Sbjct: 42 AMREGVMAPGKRIRPLLMLLAARDLRYQGSMPTLLDLACAVELTHTASLMLDDMPCMDNA 101
Query: 157 PLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADG 216
LRRG+PT H +GE VA+LA LL+ AF IA T + R +A+ EL+ +G G
Sbjct: 102 ELRRGQPTTHKKFGESVAILASVGLLSKAFGLIA-ATGDLPGERRAQAVNELSTAVGVQG 160
Query: 217 LVAGQ------AEKDLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARC 270
LV GQ A D + + + KT L A + + AI + + E L FA
Sbjct: 161 LVLGQFRDLNDAALDRTPDAILSTNHLKTGILFSAMLQIVAIASASSPSTRETLHAFALD 220
Query: 271 IGLLFQVVDDIL-DLTKSSKELGKTAGKDLVADKL 304
G FQ++DD+ D ++ K+ K AGK + ++L
Sbjct: 221 FGQAFQLLDDLRDDHPETGKDRNKDAGKSTLVNRL 255
>sp|Q76FS5|SPS2_ARATH Solanesyl diphosphate synthase 2, chloroplastic OS=Arabidopsis
thaliana GN=SPS2 PE=1 SV=1
Length = 417
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 145/284 (51%), Gaps = 30/284 (10%)
Query: 43 QRPRRPVSISAVQTLEENPAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRY 102
Q R+P+S+ + F+ + +Q+ +N L + V ++PV I + +
Sbjct: 87 QESRKPISLETL------------FEVVADDLQR---LNDNLLSIVGAENPVLISAAEQI 131
Query: 103 SLLAGGKRVRPVLCL----AACDLVGGHESMAMPAACS--IEMIHTMSLIHDDLPCMDND 156
AGGKR+RP L A +L G E IEMIHT SLIHDD+ +D
Sbjct: 132 -FSAGGKRMRPGLVFLVSRATAELAGLKELTVEHRRLGEIIEMIHTASLIHDDV--LDES 188
Query: 157 PLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADG 216
+RRG+ T H ++G VAVLAGD + A A ++A + +++ I+++ K +
Sbjct: 189 DMRRGRETVHELFGTRVAVLAGDFMFAQASWYLA----NLENLEVIKLISQVIKDFASGE 244
Query: 217 LVAGQAEKDLGIEHLEFIHE--HKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLL 274
+ + D ++ +++ + +KTA+L+ A+ AI E++ F + +GL
Sbjct: 245 IKQASSLFDCDVKLDDYMLKSYYKTASLVAASTKGAAIFSKVESKVAEQMYQFGKNLGLS 304
Query: 275 FQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKL 318
FQVVDDILD T+S+++LGK A DL +T P + +E +L
Sbjct: 305 FQVVDDILDFTQSTEQLGKPAANDLAKGNITAPVIFALENEPRL 348
>sp|Q1XDL8|PREA_PORYE Prenyl transferase OS=Porphyra yezoensis GN=preA PE=3 SV=1
Length = 323
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/260 (30%), Positives = 133/260 (51%), Gaps = 20/260 (7%)
Query: 75 QKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAAC-------DLVGGHE 127
Q+ ++ + L A + P+ ++ + ++ AGGKRVRP L D+ G +
Sbjct: 13 QELCSLEKNLKAVAGTRHPI-LYAAAKHLFDAGGKRVRPALVFLVAKATSEKQDINTGQK 71
Query: 128 SMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFE 187
+A E+IHT SL+HDD+ +D RRG T H ++ +AVLAGD L A +
Sbjct: 72 RLAEIT----EIIHTASLVHDDI--IDECTTRRGVKTVHNLFNTKIAVLAGDFLFAQSSW 125
Query: 188 HIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQAEKDLGIEHLEFIHE--HKTAALLEA 245
++A + +V+AI+++ + G D I +I + +KTA+L+ A
Sbjct: 126 YLA----NIENLAVVKAISKVITDFAEGEIRQGLVHFDPSISIDAYIEKSFYKTASLIAA 181
Query: 246 AVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLT 305
+ A+L G L + + +GL FQ++DD+LD+T S+K LGK AG DL+ LT
Sbjct: 182 SCRGAAMLNGSNHQINNDLYLYGKHMGLAFQIMDDVLDITGSTKSLGKPAGADLINGNLT 241
Query: 306 YPKLLGIEESKKLADKLNKD 325
P L + + L D ++++
Sbjct: 242 SPLLFSLTQEASLNDLIDRE 261
>sp|O24743|SDSA_RHOCA All-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate
specific) OS=Rhodobacter capsulatus GN=sdsA PE=1 SV=1
Length = 325
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/256 (33%), Positives = 133/256 (51%), Gaps = 13/256 (5%)
Query: 67 FDFKSYMI----QKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDL 122
DFK ++ Q + ++Q ++ +S K + + S ++ + AGGKR+RP++CL A
Sbjct: 3 IDFKQDILAPVAQDFAAMDQFINEGISSKVALVMSVS-KHVVEAGGKRMRPIMCLLAAYA 61
Query: 123 VG-GHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDAL 181
G + A A IEM+HT +L+HDD+ +D LRRG+PT + + AVL GD L
Sbjct: 62 CGETNLKHAQKLAAIIEMLHTATLVHDDV--VDESGLRRGRPTANATWNNQTAVLVGDFL 119
Query: 182 LAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQAEKDLGIE-HLEFIHEHKTA 240
+A AF+ + + E+A+ G + Q + D + +L+ IH KT+
Sbjct: 120 IARAFDLLVDLDNMILLKDFSTGTCEIAE--GEVLQLQAQHQPDTTEDIYLQIIH-GKTS 176
Query: 241 ALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLV 300
L E A AIL G + E LR FA G FQ++DDILD T + LGK G DL+
Sbjct: 177 RLFELATEGAAILAGKPEYR-EPLRRFAGHFGNAFQIIDDILDYTSDADTLGKNIGDDLM 235
Query: 301 ADKLTYPKLLGIEESK 316
K T P + ++ ++
Sbjct: 236 EGKPTLPLIAAMQNTQ 251
>sp|O66129|HEXB_MICLU Hexaprenyl-diphosphate synthase large subunit
((2E,6E)-farnesyl-diphosphate specific) OS=Micrococcus
luteus GN=hexs-b PE=1 SV=1
Length = 325
Score = 112 bits (280), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 115/230 (50%), Gaps = 6/230 (2%)
Query: 92 DPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLP 151
D I+++ + L +GGKRVRP+ L + L + + A S+E++H SL+HDD
Sbjct: 28 DSETINKAAHHILSSGGKRVRPMFVLLSGFLNDTQKDDLIRTAVSLELVHMASLVHDDY- 86
Query: 152 CMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKY 211
+DN +RRG + H + +D A+ G LLA A ++IA + I E+
Sbjct: 87 -IDNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATINNSKFHQIFSKTILEVC-- 143
Query: 212 IGADGLVAGQAEKDLGIE-HLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARC 270
G +A + + +L I+ KTA L+EA+ LGA+ + ++ F C
Sbjct: 144 FGEFDQMADRFNYPVSFTAYLRRINR-KTAILIEASCHLGALSSQLDEQSTYHIKQFGHC 202
Query: 271 IGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLAD 320
IG+ +Q++DDILD T LGK G D+ +TYP + I K+ D
Sbjct: 203 IGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAIANLKEQDD 252
>sp|P44916|ISPB_HAEIN Octaprenyl-diphosphate synthase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ispB PE=1 SV=1
Length = 329
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 127/238 (53%), Gaps = 21/238 (8%)
Query: 80 VNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEM 139
VNQ + A ++ P+ I + Y + GGKR+RP++ + A +G S ++ A +E
Sbjct: 23 VNQNILAQLNSDVPL-IGQLGFYIVQGGGKRIRPLIAVLAARSLGFEGSNSITCATFVEF 81
Query: 140 IHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPA 199
IHT SL+HDD+ +D +RRG+ T + +G +VL GD + AF+ +A +
Sbjct: 82 IHTASLLHDDV--VDESDMRRGRATANAEFGNAASVLVGDFIYTRAFQLVA----QLESL 135
Query: 200 RIVRAIAELAKYIGADGLVAGQAEKDLGIE--------HLEFIHEHKTAALLEAAVVLGA 251
+I+ +A+ + L G+ ++ + + ++ I+ KTA L E A A
Sbjct: 136 KILSIMAD-----ATNVLAEGEVQQLMNVNDPETSEANYMRVIYS-KTARLFEVAGQAAA 189
Query: 252 ILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKL 309
I+ GGT+ + + L+ + R +G FQ+VDD+LD + +++ LGK G DL K T P L
Sbjct: 190 IVAGGTEAQEKALQDYGRYLGTAFQLVDDVLDYSANTQALGKNVGDDLAEGKPTLPLL 247
>sp|P55785|HEPS2_GEOSE Heptaprenyl diphosphate synthase component 2 OS=Geobacillus
stearothermophilus GN=hepT PE=3 SV=1
Length = 320
Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 126/247 (51%), Gaps = 7/247 (2%)
Query: 71 SYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMA 130
S++ + V + L+ AV + + E+ + L AGGKR+RPV L A G ++
Sbjct: 8 SFLSDDLAAVEEELERAVQ-SEYGPLGEAALHLLQAGGKRIRPVFVLLAARF-GQYDLER 65
Query: 131 MP-AACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHI 189
M A ++E+IH SL+HDD+ +D+ LRRG+PT + A+ GD L A + E +
Sbjct: 66 MKHVAVALELIHMASLVHDDV--IDDADLRRGRPTIKAKWSNRFAMYTGDYLFARSLERM 123
Query: 190 AVCTKGVSPARIVRAIAELAKYIGADGLVAGQAEKDLGIEHLEFIHEHKTAALLEAAVVL 249
A + + + I E+ + G + + D + KTA L+ A+ L
Sbjct: 124 AELGNPRAHQVLAKTIVEVCR--GEIEQIKDKYRFDQPLRTYLRRIRRKTALLIAASCQL 181
Query: 250 GAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKL 309
GA+ G + V++L F +G+ FQ+ DDILD T + ++LGK AG DL+ +T P L
Sbjct: 182 GALAAGAPEPIVKRLYWFGHYVGMSFQITDDILDFTGTEEQLGKPAGSDLLQGNVTLPVL 241
Query: 310 LGIEESK 316
+ + +
Sbjct: 242 YALSDER 248
>sp|P0AD58|ISPB_SHIFL Octaprenyl-diphosphate synthase OS=Shigella flexneri GN=ispB PE=3
SV=1
Length = 323
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 112/217 (51%), Gaps = 10/217 (4%)
Query: 96 IHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDN 155
I++ Y + GGKR+RP++ + A VG + + A IE IHT +L+HDD+ +D
Sbjct: 32 INQLGYYIVSGGGKRIRPMIAVLAARAVGYEGNAHVTIAALIEFIHTATLLHDDV--VDE 89
Query: 156 DPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGAD 215
+RRGK T + +G +VL GD + AF+ + + +++ ++E I A+
Sbjct: 90 SDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMT----SLGSLKVLEVMSEAVNVI-AE 144
Query: 216 GLV---AGQAEKDLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIG 272
G V + D+ E+ + KTA L EAA IL G T E + L+ + R +G
Sbjct: 145 GEVLQLMNVNDPDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEEEKGLQDYGRYLG 204
Query: 273 LLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKL 309
FQ++DD+LD ++LGK G DL K T P L
Sbjct: 205 TAFQLIDDLLDYNADGEQLGKNVGDDLNEGKPTLPLL 241
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,493,748
Number of Sequences: 539616
Number of extensions: 5340301
Number of successful extensions: 16685
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 16422
Number of HSP's gapped (non-prelim): 123
length of query: 353
length of database: 191,569,459
effective HSP length: 118
effective length of query: 235
effective length of database: 127,894,771
effective search space: 30055271185
effective search space used: 30055271185
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)