Query 038854
Match_columns 353
No_of_seqs 269 out of 1566
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 06:02:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038854.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038854hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f62_A Geranyltranstransferase 100.0 3.3E-70 1.1E-74 526.0 30.4 286 66-353 2-295 (317)
2 3ts7_A Geranyltranstransferase 100.0 7.2E-70 2.4E-74 525.1 31.0 288 65-353 5-302 (324)
3 3lsn_A Geranyltranstransferase 100.0 1E-69 3.5E-74 520.7 30.9 286 67-353 1-296 (304)
4 3lom_A Geranyltranstransferase 100.0 1E-68 3.5E-73 515.4 27.2 282 69-352 9-302 (313)
5 1rqj_A Geranyltranstransferase 100.0 1.7E-68 5.7E-73 511.9 28.3 287 67-353 1-299 (299)
6 2h8o_A Geranyltranstransferase 100.0 2.9E-68 9.8E-73 516.6 29.3 286 67-353 37-335 (335)
7 3m0g_A Farnesyl diphosphate sy 100.0 6.8E-69 2.3E-73 513.4 24.3 281 67-353 1-289 (297)
8 3uca_A Geranyltranstransferase 100.0 1.3E-68 4.5E-73 516.3 26.0 282 69-353 33-324 (324)
9 3p8l_A Geranyltranstransferase 100.0 2.5E-68 8.6E-73 510.3 25.7 279 71-351 12-302 (302)
10 3pde_A Farnesyl-diphosphate sy 100.0 1.7E-68 5.8E-73 512.5 23.1 285 67-353 6-300 (309)
11 3p8r_A Geranyltranstransferase 100.0 2.4E-68 8.1E-73 511.0 23.6 281 72-353 12-302 (302)
12 1rtr_A Geranyltranstransferase 100.0 1.8E-67 6.3E-72 504.9 28.0 282 67-353 4-293 (301)
13 3llw_A Geranyltranstransferase 100.0 5.4E-67 1.9E-71 503.0 26.2 284 64-352 3-304 (311)
14 3oyr_A Trans-isoprenyl diphosp 100.0 4.1E-65 1.4E-69 496.5 29.3 278 63-352 21-344 (345)
15 3mzv_A Decaprenyl diphosphate 100.0 1.7E-64 5.7E-69 491.9 28.5 281 62-353 7-333 (341)
16 2j1p_A Geranylgeranyl pyrophos 100.0 1.6E-63 5.5E-68 476.1 28.8 274 66-353 10-293 (293)
17 3npk_A Geranyltranstransferase 100.0 1.2E-63 4.1E-68 475.7 25.1 269 78-350 7-284 (291)
18 2ftz_A Geranyltranstransferase 100.0 1.1E-63 3.8E-68 474.6 24.6 262 76-351 14-284 (284)
19 1wy0_A Geranylgeranyl pyrophos 100.0 4.4E-63 1.5E-67 482.8 27.3 280 68-353 6-342 (342)
20 3lmd_A Geranylgeranyl pyrophos 100.0 1.5E-62 5E-67 480.5 26.1 274 67-353 34-352 (360)
21 3rmg_A Octaprenyl-diphosphate 100.0 9.5E-63 3.2E-67 478.5 23.6 274 67-353 7-326 (334)
22 4dhd_A Polyprenyl synthetase; 100.0 2.6E-62 9E-67 479.3 25.8 275 67-353 4-336 (358)
23 3aqb_B Component B of hexapren 100.0 7.8E-62 2.7E-66 470.9 25.4 275 67-353 4-325 (325)
24 3pko_A Geranylgeranyl pyrophos 100.0 1.9E-62 6.6E-67 476.3 20.2 275 67-353 15-334 (334)
25 3nf2_A Putative polyprenyl syn 100.0 1.9E-61 6.6E-66 472.0 27.0 276 68-352 4-343 (352)
26 3ipi_A Geranyltranstransferase 100.0 2.9E-61 9.8E-66 460.3 23.2 257 78-352 12-283 (295)
27 3apz_A Geranyl diphosphate syn 100.0 2E-61 7E-66 472.0 21.6 273 69-353 10-348 (348)
28 1wmw_A Geranylgeranyl diphosph 100.0 3.1E-59 1.1E-63 453.6 24.9 268 75-353 7-330 (330)
29 2azj_A Geranylgeranyl pyrophos 100.0 1.4E-58 4.7E-63 440.8 25.1 266 66-352 8-280 (289)
30 3lk5_A Geranylgeranyl pyrophos 100.0 4.6E-58 1.6E-62 452.1 26.6 252 95-352 49-372 (380)
31 3tc1_A Octaprenyl pyrophosphat 100.0 5.7E-58 2E-62 441.4 20.5 258 75-349 4-307 (315)
32 1v4e_A Octoprenyl-diphosphate 100.0 3.1E-58 1.1E-62 440.6 17.6 225 73-316 9-240 (299)
33 2qis_A Farnesyl pyrophosphate 100.0 2.3E-57 7.9E-62 446.8 23.1 278 68-353 34-374 (374)
34 2q80_A Geranylgeranyl pyrophos 100.0 4.6E-58 1.6E-62 439.9 15.9 252 84-353 2-297 (301)
35 2e8v_A Geranylgeranyl pyrophos 100.0 2.2E-57 7.6E-62 442.0 19.2 230 79-315 9-250 (340)
36 1yhl_A Farnesyl pyrophosphate 100.0 1.9E-56 6.6E-61 439.0 22.5 278 68-353 3-362 (362)
37 1uby_A FPS, farnesyl diphospha 100.0 2.5E-56 8.6E-61 438.4 20.8 277 69-353 28-367 (367)
38 2ihi_A Pyrophosphate synthase; 100.0 1.7E-56 5.8E-61 442.7 19.5 278 67-352 34-395 (395)
39 3dyh_A Farnesyl pyrophosphate 100.0 6.3E-56 2.2E-60 438.4 20.7 278 68-353 28-390 (390)
40 3kra_B Geranyl diphosphate syn 100.0 5.2E-55 1.8E-59 413.4 23.5 248 70-345 2-258 (274)
41 3mav_A Farnesyl pyrophosphate 100.0 9.5E-55 3.3E-59 431.3 21.6 275 66-351 33-390 (395)
42 2her_A Fragment, farnesyl pyro 100.0 6.6E-56 2.3E-60 434.1 10.9 271 68-351 27-354 (368)
43 3qkc_B Geranyl diphosphate syn 100.0 5.6E-53 1.9E-57 399.4 27.8 249 67-348 4-259 (273)
44 2q58_A Fragment, farnesyl pyro 100.0 1.4E-54 4.6E-59 426.4 12.5 276 66-352 25-359 (368)
45 4fp4_A Polyprenyl synthetase; 100.0 1.1E-52 3.9E-57 397.9 15.9 220 67-302 4-226 (285)
46 4hd1_A Squalene synthase HPNC; 94.2 1.5 5.2E-05 40.8 15.7 103 226-336 123-237 (294)
47 3vj8_A Squalene synthase; farn 93.0 0.61 2.1E-05 44.6 10.9 109 226-336 136-256 (343)
48 3acx_A Dehydrosqualene synthas 91.2 1.2 3.9E-05 41.5 10.2 95 226-337 127-243 (293)
49 4fp4_A Polyprenyl synthetase; 87.1 3 0.0001 38.8 9.6 67 257-335 66-132 (285)
50 3mzv_A Decaprenyl diphosphate 86.3 2.9 9.9E-05 39.9 9.3 74 249-334 63-136 (341)
51 3rmg_A Octaprenyl-diphosphate 85.7 3.7 0.00013 39.0 9.7 67 255-333 63-129 (334)
52 3nf2_A Putative polyprenyl syn 85.2 2.9 9.9E-05 40.1 8.7 76 248-335 63-138 (352)
53 2q80_A Geranylgeranyl pyrophos 84.6 7.6 0.00026 36.2 11.2 69 255-335 41-109 (301)
54 3m0g_A Farnesyl diphosphate sy 83.1 7.2 0.00025 36.4 10.3 74 249-334 51-126 (297)
55 4f62_A Geranyltranstransferase 81.9 8.9 0.0003 36.1 10.5 68 255-334 61-130 (317)
56 2ftz_A Geranyltranstransferase 81.1 8.6 0.0003 35.6 10.0 68 255-334 62-131 (284)
57 3aqb_B Component B of hexapren 80.6 5.6 0.00019 37.5 8.6 73 249-333 54-126 (325)
58 3lmd_A Geranylgeranyl pyrophos 80.6 5.2 0.00018 38.4 8.5 74 249-334 84-158 (360)
59 2e8v_A Geranylgeranyl pyrophos 80.2 10 0.00035 35.9 10.4 69 255-335 56-124 (340)
60 3pko_A Geranylgeranyl pyrophos 80.0 9.9 0.00034 36.0 10.2 71 252-334 68-139 (334)
61 2azj_A Geranylgeranyl pyrophos 79.5 8.3 0.00028 35.8 9.3 73 250-334 60-133 (289)
62 1wy0_A Geranylgeranyl pyrophos 79.1 7.5 0.00026 36.8 9.0 70 252-333 59-128 (342)
63 1wmw_A Geranylgeranyl diphosph 78.8 12 0.0004 35.3 10.2 73 249-333 49-121 (330)
64 1v4e_A Octoprenyl-diphosphate 78.6 7 0.00024 36.4 8.5 65 257-333 59-123 (299)
65 1rqj_A Geranyltranstransferase 78.4 19 0.00066 33.3 11.5 73 249-333 54-128 (299)
66 4dhd_A Polyprenyl synthetase; 78.4 5.4 0.00018 38.2 7.8 63 257-331 63-125 (358)
67 1di1_A Aristolochene synthase; 77.7 20 0.00067 32.5 11.3 100 225-330 151-260 (300)
68 3lsn_A Geranyltranstransferase 76.6 12 0.00041 35.0 9.5 74 249-334 54-129 (304)
69 3oyr_A Trans-isoprenyl diphosp 76.3 4.1 0.00014 38.9 6.3 73 249-333 75-147 (345)
70 3llw_A Geranyltranstransferase 75.9 7.1 0.00024 36.7 7.7 62 259-332 74-137 (311)
71 3pde_A Farnesyl-diphosphate sy 75.5 12 0.0004 35.1 9.1 68 255-334 64-135 (309)
72 3ts7_A Geranyltranstransferase 75.2 11 0.00037 35.6 8.9 70 253-334 64-135 (324)
73 3p8l_A Geranyltranstransferase 74.9 16 0.00055 34.0 9.9 62 260-333 72-135 (302)
74 3kb9_A EPI-isozizaene synthase 74.8 59 0.002 30.9 14.9 95 225-331 205-309 (382)
75 2h8o_A Geranyltranstransferase 74.6 13 0.00043 35.3 9.2 72 250-333 96-169 (335)
76 1rtr_A Geranyltranstransferase 74.2 17 0.00058 33.8 9.9 69 253-333 56-126 (301)
77 2j1p_A Geranylgeranyl pyrophos 74.0 24 0.00084 32.5 10.8 69 253-333 66-136 (293)
78 3bny_A Aristolochene synthase; 71.8 38 0.0013 30.9 11.7 62 225-287 165-227 (320)
79 3lom_A Geranyltranstransferase 70.2 14 0.00049 34.6 8.4 73 249-333 60-134 (313)
80 3p8r_A Geranyltranstransferase 70.0 12 0.00039 35.0 7.6 75 248-334 59-135 (302)
81 3ipi_A Geranyltranstransferase 70.0 4.1 0.00014 38.0 4.5 65 257-333 60-124 (295)
82 1yyq_A Trichodiene synthase; t 69.3 81 0.0028 30.1 15.6 47 105-156 57-106 (374)
83 3npk_A Geranyltranstransferase 68.6 31 0.001 31.9 10.1 64 258-333 59-124 (291)
84 3uca_A Geranyltranstransferase 65.8 13 0.00043 35.2 7.0 72 249-332 84-157 (324)
85 3kra_B Geranyl diphosphate syn 65.3 17 0.00059 33.3 7.7 74 250-334 51-124 (274)
86 2q58_A Fragment, farnesyl pyro 63.2 16 0.00055 34.9 7.3 57 264-332 100-156 (368)
87 3apz_A Geranyl diphosphate syn 61.1 30 0.001 32.7 8.7 59 264-334 92-150 (348)
88 3lk5_A Geranylgeranyl pyrophos 57.5 50 0.0017 31.6 9.7 65 257-333 86-166 (380)
89 3tc1_A Octaprenyl pyrophosphat 56.0 31 0.0011 32.2 7.8 60 263-334 61-120 (315)
90 3qkc_B Geranyl diphosphate syn 54.7 26 0.0009 32.0 6.9 72 249-333 55-126 (273)
91 2her_A Fragment, farnesyl pyro 42.9 36 0.0012 32.6 6.0 61 259-331 95-158 (368)
92 2ihi_A Pyrophosphate synthase; 42.6 67 0.0023 31.0 7.9 56 265-332 111-168 (395)
93 1ps1_A Pentalenene synthase; a 39.3 2.2E+02 0.0075 25.8 15.7 95 225-331 162-267 (337)
94 3v1v_A 2-MIB synthase, 2-methy 35.6 2.3E+02 0.008 27.4 10.7 60 225-286 283-345 (433)
95 3n0f_A Isoprene synthase; terp 34.8 2.3E+02 0.0077 28.6 10.6 94 225-331 392-497 (555)
96 3aqb_A Component A of hexapren 33.1 23 0.00078 29.3 2.4 52 138-212 52-103 (147)
97 3g4d_A (+)-delta-cadinene synt 31.0 2.2E+02 0.0075 28.7 9.8 94 225-331 394-499 (554)
98 2qis_A Farnesyl pyrophosphate 30.7 1.1E+02 0.0037 29.1 7.3 34 266-311 111-144 (374)
99 1yhl_A Farnesyl pyrophosphate 27.0 1.5E+02 0.0051 27.9 7.5 55 267-333 86-142 (362)
100 3m00_A Aristolochene synthase; 26.8 4.9E+02 0.017 26.0 12.2 94 225-331 390-494 (550)
101 2ong_A 4S-limonene synthase; m 25.5 5.1E+02 0.017 25.7 13.1 95 225-332 383-489 (543)
102 1uby_A FPS, farnesyl diphospha 24.7 2E+02 0.0069 27.1 7.9 36 263-310 101-136 (367)
103 4err_A Autotransporter adhesin 23.2 2.5E+02 0.0085 21.3 8.4 70 259-351 9-80 (90)
No 1
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=100.00 E-value=3.3e-70 Score=526.00 Aligned_cols=286 Identities=44% Similarity=0.697 Sum_probs=242.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhCCCC-chhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCCccccccHHHHHHHHHHHH
Q 038854 66 TFDFKSYMIQKASTVNQALDAAVSLKD-PVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMS 144 (353)
Q Consensus 66 ~~~~~~~l~~~~~~v~~~l~~~~~~~~-p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~lA~avEliH~as 144 (353)
+|+|..++.+....|++.|++.++... |+.+.++++|.+..||||+||.||+++++++|++.+.+.++|++|||||++|
T Consensus 2 ~m~~~~~l~~~~~~ve~~L~~~l~~~~~~~~l~~a~~y~~~~gGKrlRp~Lvl~~~~~~g~~~~~~~~~A~avEliH~aS 81 (317)
T 4f62_A 2 VMNLKQFSTYTQSRVDQYLEQQLSDYAPANQLHNAMRYSLFNGGKRIRPMLTYASAQLVGDISSLTDASAAALESIHAYS 81 (317)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCCCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999998642 6789999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhccc-
Q 038854 145 LIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQAE- 223 (353)
Q Consensus 145 LIHDDI~~iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~l~~GQ~~- 223 (353)
||||||||||+|++|||+||+|++||+++|||+||+|++.||+.+++. .+.+++...+++..+++++|..+++.||.+
T Consensus 82 LIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~-~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lD 160 (317)
T 4f62_A 82 LIHDDLPAMDNDELRRGKPTCHIQFDEATAILAGDALQTFAFELLSNP-TSAQPELAIKLIQELVVASGRNGMITGQMID 160 (317)
T ss_dssp HHHHHSTTSCC-------CCHHHHSCHHHHHHHHHHHHHHHHHHHTCT-TCCCHHHHHHHHHHHHHHHSTTTHHHHHHHH
T ss_pred HHHCCcccccCCCCcCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHhhhhHHHhHHHH
Confidence 999999999999999999999999999999999999999999999875 344566678899999998876789999998
Q ss_pred -----ccCChhHHHHHHHhcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcch
Q 038854 224 -----KDLGIEHLEFIHEHKTAALLEAAVVLGAILGG-GTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGK 297 (353)
Q Consensus 224 -----~~~~~~~~~~i~~~KTg~L~~~~~~lga~lag-~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~ 297 (353)
..+++++|..|+++|||+||++||++|++++| ++++.++.+++||.++|+||||+||++|++++++.+||++|+
T Consensus 161 l~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~ 240 (317)
T 4f62_A 161 LSSENKNISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFS 240 (317)
T ss_dssp HHTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC------------
T ss_pred HhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHhhCCCcch
Confidence 34688999999999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred hhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhccC
Q 038854 298 DLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 353 (353)
Q Consensus 298 Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~~~~~~~~~L~~l~~~i~~R~~ 353 (353)
|+++||+|||+++|+++|++.++++.++|++.|+.||+ ..+.|.++++|+++|++
T Consensus 241 Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~l~~~~~~R~~ 295 (317)
T 4f62_A 241 DAEANKATYPKLLGLDGAKALVVRLHEQAIAQISEFGD-KSQPLTDLANYIIDRNH 295 (317)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGGG-GGHHHHHHHHHHHC---
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999985 45899999999999974
No 2
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=100.00 E-value=7.2e-70 Score=525.12 Aligned_cols=288 Identities=42% Similarity=0.654 Sum_probs=254.4
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHhCCC--CchhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCCccccccHHHHHHHHHH
Q 038854 65 PTFDFKSYMIQKASTVNQALDAAVSLK--DPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHT 142 (353)
Q Consensus 65 ~~~~~~~~l~~~~~~v~~~l~~~~~~~--~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~lA~avEliH~ 142 (353)
+.++|..++.+....|++.|.+.++.. .|+.+.++++|.+..||||+||+||+++++++|++.+.+.++|++|||||+
T Consensus 5 ~~~~~~~~l~~~~~~ve~~L~~~l~~~~~~~~~l~~a~~y~~~~gGKrlRP~L~l~~~~~~g~~~~~~~~~A~avEliH~ 84 (324)
T 3ts7_A 5 PERSLSDFMRSSQERVERALDARLPAADRMPERLHQAMRYSVLGGGKRMRPLLTYATGQTIGVAADLLDGPACAVEFIHV 84 (324)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHTSCCTTSSSHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHTCCGGGTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 356899999999999999999998764 477899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhcc-CCCChHHHHHHHHHHHHHHhhhhhhhhc
Q 038854 143 MSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCT-KGVSPARIVRAIAELAKYIGADGLVAGQ 221 (353)
Q Consensus 143 asLIHDDI~~iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~-~~~~~~~~~~~~~~l~~~i~~~~l~~GQ 221 (353)
+|||||||||||+|++|||+||+|++||+++|||+||+|++.||+.+++.. .+.+++...+++..+++++|..+++.||
T Consensus 85 aSLIHDDip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ 164 (324)
T 3ts7_A 85 YSLIHDDLPAMDDDDLRRGKPTCHKAYDEATAILAGDGLQALAFHVLAQDPSIAVPAENRIAMIETLAKASGPAGMVGGQ 164 (324)
T ss_dssp HHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHSTTTHHHHH
T ss_pred HHHhhcCcccccCCCccCCCCchhhhcChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhhhHHHHhH
Confidence 999999999999999999999999999999999999999999999999763 2455666788999999988767899999
Q ss_pred cc------ccCChhHHHHHHHhcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCC
Q 038854 222 AE------KDLGIEHLEFIHEHKTAALLEAAVVLGAILGG-GTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKT 294 (353)
Q Consensus 222 ~~------~~~~~~~~~~i~~~KTg~L~~~~~~lga~lag-~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~ 294 (353)
.+ .++++++|+.|+++|||+||++||++|++++| ++++.++.+++||.++|+||||+||++|++++++++||+
T Consensus 165 ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~ 244 (324)
T 3ts7_A 165 AIDLASVGKKLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESDTQTLGKT 244 (324)
T ss_dssp HHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-------
T ss_pred HHHHHccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCC
Confidence 88 35788999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred cchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhccC
Q 038854 295 AGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 353 (353)
Q Consensus 295 ~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~~~~~~~~~L~~l~~~i~~R~~ 353 (353)
+|+|+++||+|||+++|+++|++.++++.++|++.|+.||++ .+.|.+|++|+++|++
T Consensus 245 ~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~~-~~~L~~la~~~~~R~~ 302 (324)
T 3ts7_A 245 RGKDRDHNKPNYPALLGLSGAKEKAEEMHEAALESLAGFGPE-ADLLRELARFIIQRQS 302 (324)
T ss_dssp --------CCCHHHHHCHHHHHHHHHHHHHHHHHTTTTCCGG-GHHHHHHHHHHHHTSS
T ss_pred ccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-HHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999864 6899999999999974
No 3
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=100.00 E-value=1e-69 Score=520.66 Aligned_cols=286 Identities=43% Similarity=0.717 Sum_probs=253.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCC--chhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCCccccccHHHHHHHHHHHH
Q 038854 67 FDFKSYMIQKASTVNQALDAAVSLKD--PVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMS 144 (353)
Q Consensus 67 ~~~~~~l~~~~~~v~~~l~~~~~~~~--p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~lA~avEliH~as 144 (353)
|+|..++.+....|++.|.+.++... |+.+.++++|.+..||||+||.||+++++++|++.+.+.++|++|||||++|
T Consensus 1 m~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~as 80 (304)
T 3lsn_A 1 MSLTAYQASSQARVDAAMHTLFTAPSPELARLYEAMRYSVMNGGKRVRPLLAYAACEALGGKPEQANGAACAVELIHAYS 80 (304)
T ss_dssp -CHHHHHHHHHHHHHHHHHGGGCCSSGGGHHHHHHHHHHHTTTCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999998753 6789999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhcc-CCCChHHHHHHHHHHHHHHhhhhhhhhccc
Q 038854 145 LIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCT-KGVSPARIVRAIAELAKYIGADGLVAGQAE 223 (353)
Q Consensus 145 LIHDDI~~iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~-~~~~~~~~~~~~~~l~~~i~~~~l~~GQ~~ 223 (353)
||||||||||+|++|||+||+|++||+++|||+||+|++.||+.+++.. .+++++...+++..+++++|..+++.||.+
T Consensus 81 LIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~GQ~l 160 (304)
T 3lsn_A 81 LVHDDLPAMDDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDPALSDASAEIRLRMVTTLAQAAGPAGMVGGQAI 160 (304)
T ss_dssp HHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHSTTTHHHHHHH
T ss_pred HHHCCcccccCCCccCCCCchHhhcCHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHchhhHhHhHHH
Confidence 9999999999999999999999999999999999999999999999753 234666678889999998876679999988
Q ss_pred ------ccCChhHHHHHHHhcHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcc
Q 038854 224 ------KDLGIEHLEFIHEHKTAALLEAAVVLGAILGGG-TDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAG 296 (353)
Q Consensus 224 ------~~~~~~~~~~i~~~KTg~L~~~~~~lga~lag~-~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g 296 (353)
..+++++|+.|+++|||+||++||++|++++|+ +++.++.+++||.++|+||||+||++|++++++.+||++|
T Consensus 161 Dl~~~~~~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~g 240 (304)
T 3lsn_A 161 DLGSVGLKLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQG 240 (304)
T ss_dssp HHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCCCcc
Confidence 347889999999999999999999999999999 8889999999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhccC
Q 038854 297 KDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 353 (353)
Q Consensus 297 ~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~~~~~~~~~L~~l~~~i~~R~~ 353 (353)
+|+++||+|||+++|+++|++.++++.++|++.|+.||. ..+.|.+|++|+++|.+
T Consensus 241 ~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~l~~~~~~R~~ 296 (304)
T 3lsn_A 241 ADIARDKPTYPALLGLAAAKEYALELRDQALHALRPFDA-AAEPLRELARYIVERRS 296 (304)
T ss_dssp -------CCHHHHHCHHHHHHHHHHHHHHHHHHTTTSCG-GGHHHHHHHHHHHC---
T ss_pred cHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999985 45899999999999964
No 4
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=100.00 E-value=1e-68 Score=515.35 Aligned_cols=282 Identities=32% Similarity=0.474 Sum_probs=249.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCC--CchhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCCccccccHHHHHHHHHHHHHH
Q 038854 69 FKSYMIQKASTVNQALDAAVSLK--DPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLI 146 (353)
Q Consensus 69 ~~~~l~~~~~~v~~~l~~~~~~~--~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~lA~avEliH~asLI 146 (353)
|..++.+....|++.|++.++.. .|+.+.++++|.+..||||+||.||+++++++|++.+.+.++|++|||||++|||
T Consensus 9 ~~~~l~~~~~~ve~~L~~~l~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSLI 88 (313)
T 3lom_A 9 NKQVIDKYTQRHELYLEQLLNEIIIPAPQIRSALHYALFSGGKRIRPILVYLAGDLIDVDQGVLDIIAAALELTHCYSLI 88 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHCCSSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999864 4778999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhccCCCCh-HHHHHHHHHHHHHHhhhhhhhhccc--
Q 038854 147 HDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSP-ARIVRAIAELAKYIGADGLVAGQAE-- 223 (353)
Q Consensus 147 HDDI~~iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~~~~~~-~~~~~~~~~l~~~i~~~~l~~GQ~~-- 223 (353)
||||||||+|++|||+||+|++||+++|||+||+|++.||+.+++...+.++ +...+++..+++++|..+++.||++
T Consensus 89 HDDip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl 168 (313)
T 3lom_A 89 HDDLPAMDNDDLRRGKPSCHKAFDEATAILVGDGMQALAIEVLLMRLSPLLPAAQVVAITQVLVNASGISGMVSGQSLDL 168 (313)
T ss_dssp HHHSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHHH
T ss_pred hCCcccccCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHhHhHHHHhHHHHH
Confidence 9999999999999999999999999999999999999999999976434444 5678889999998876789999988
Q ss_pred ----c-cCChhHHHHHHHhcHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcc
Q 038854 224 ----K-DLGIEHLEFIHEHKTAALLEAAVVLGAILGG--GTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAG 296 (353)
Q Consensus 224 ----~-~~~~~~~~~i~~~KTg~L~~~~~~lga~lag--~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g 296 (353)
. ++++++|+.|+++|||+||+++|++ |+++| ++++.++.+++||.++|+||||+||++|++++++.+||++|
T Consensus 169 ~~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l~~~g~~lGlaFQI~DDilD~~gd~~~~GK~~g 247 (313)
T 3lom_A 169 SELAKSSVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRS 247 (313)
T ss_dssp HTTTSSCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------
T ss_pred HccCCCCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHhhCCCCc
Confidence 2 6789999999999999999999999 99999 89999999999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcc
Q 038854 297 KDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQ 352 (353)
Q Consensus 297 ~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~~~~~~~~~L~~l~~~i~~R~ 352 (353)
+|+++||+|||+++|+++|++.++++.++|++.|+.||++ .+.|.+|++|+++|.
T Consensus 248 ~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~-~~~L~~la~~~~~R~ 302 (313)
T 3lom_A 248 SDQANQKTTFATLFNKQQLEEEIAVHYQIAMDSLRLFGSK-AAALIELTKQLQNRS 302 (313)
T ss_dssp ------CCCHHHHSCHHHHHHHHHHHHHHHHHTTTTTGGG-GHHHHHHHHHHHHHH
T ss_pred chhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-HHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999864 589999999999996
No 5
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=100.00 E-value=1.7e-68 Score=511.93 Aligned_cols=287 Identities=42% Similarity=0.609 Sum_probs=266.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhCCC--CchhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCCccccccHHHHHHHHHHHH
Q 038854 67 FDFKSYMIQKASTVNQALDAAVSLK--DPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMS 144 (353)
Q Consensus 67 ~~~~~~l~~~~~~v~~~l~~~~~~~--~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~lA~avEliH~as 144 (353)
|+|..++.+.+..|++.|++.+... .|+.+.++++|.+..||||+||.||+++++++|++.+.++++|++|||||++|
T Consensus 1 m~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~A~avEliH~as 80 (299)
T 1rqj_A 1 MDFPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYS 80 (299)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Confidence 4688999999999999999998764 35689999999999999999999999999999998888999999999999999
Q ss_pred HHHhCCCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhc-cCCCChHHHHHHHHHHHHHHhhhhhhhhccc
Q 038854 145 LIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVC-TKGVSPARIVRAIAELAKYIGADGLVAGQAE 223 (353)
Q Consensus 145 LIHDDI~~iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~-~~~~~~~~~~~~~~~l~~~i~~~~l~~GQ~~ 223 (353)
||||||||||+|++|||+||+|++||+++|||+||+|++.||+.+++. ..+++++...+++..+++++|..+++.||++
T Consensus 81 LiHDDiP~~D~s~~RRG~pt~h~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~ 160 (299)
T 1rqj_A 81 LIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQAL 160 (299)
T ss_dssp HHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHSTTTHHHHHHH
T ss_pred HHhCCChhhcCCCCCCCCCChhhhcChHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHhhhhHHHHhHHH
Confidence 999999999999999999999999999999999999999999999974 2345666778899999998876789999998
Q ss_pred ------ccCChhHHHHHHHhcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcc
Q 038854 224 ------KDLGIEHLEFIHEHKTAALLEAAVVLGAIL-GGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAG 296 (353)
Q Consensus 224 ------~~~~~~~~~~i~~~KTg~L~~~~~~lga~l-ag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g 296 (353)
..+++++|..|+++|||+||++||++|+++ +|++++.++.+++||.++|++|||+||++|++++++.+||+.|
T Consensus 161 dl~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~~~~~~GK~~g 240 (299)
T 1rqj_A 161 DLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQG 240 (299)
T ss_dssp HHHTTTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTT
T ss_pred HHhccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChh
Confidence 246889999999999999999999999999 9988889999999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHHhcCCC-C-ChHHHHHHHHHHHhccC
Q 038854 297 KDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQ-E-KAVPLIALANYIAYRQN 353 (353)
Q Consensus 297 ~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~~~~-~-~~~~L~~l~~~i~~R~~ 353 (353)
+|+++||+|||++++++++++.++++.++|++.|+.||. + ..+.|.+|++|+++|.+
T Consensus 241 ~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~l~~~~~~~~~L~~l~~~~~~R~~ 299 (299)
T 1rqj_A 241 ADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQRNK 299 (299)
T ss_dssp HHHHHTCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHCCC
T ss_pred hHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999976 3 23899999999999975
No 6
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=100.00 E-value=2.9e-68 Score=516.61 Aligned_cols=286 Identities=36% Similarity=0.561 Sum_probs=248.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhCCC-------CchhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCCccccccHHHHHHH
Q 038854 67 FDFKSYMIQKASTVNQALDAAVSLK-------DPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEM 139 (353)
Q Consensus 67 ~~~~~~l~~~~~~v~~~l~~~~~~~-------~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~lA~avEl 139 (353)
.+|..++.+....|++.|++.+... .|+.+.++++|.+..||||+||.||+++++++|++++.++++|++|||
T Consensus 37 ~~~~~~l~~~~~~ve~~L~~~l~~~~~~~~~~~~~~l~~~~~y~~~~gGKrlRP~L~l~~~~~~g~~~~~~~~~A~aiEl 116 (335)
T 2h8o_A 37 TNFETRLRENAAKTEALLGHLLSGEARADEITRPQNLLEAMRHGVLNGGKRLRPFLVIESVALLGGDAEAGLHVGAALEC 116 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCTTCCCCCHHHHHHHHHHHHTSCSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5788899999999999999998762 467899999999999999999999999999999988888999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhh
Q 038854 140 IHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVA 219 (353)
Q Consensus 140 iH~asLIHDDI~~iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~l~~ 219 (353)
||++|||||||||||+|++|||+||+|++||+++|||+||+|++.||+.+++...+++++...+++..+++++|..+++.
T Consensus 117 iH~asLIHDDiPamD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~ls~a~g~~~~~~ 196 (335)
T 2h8o_A 117 LHCYSLVHDDLPAMDDDDLRRGQPTVHRKFDEATAILAGDSLLTLAFDIIASDDNPLAAERKAALVISLARAAGIGGMAG 196 (335)
T ss_dssp HHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHSTTSCSCHHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHHHHHHCCchhccCCCcCCCCCcHhhhcChHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999975334566677889999999887778999
Q ss_pred hccc------ccCChhHHHHHHHhcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCC
Q 038854 220 GQAE------KDLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGK 293 (353)
Q Consensus 220 GQ~~------~~~~~~~~~~i~~~KTg~L~~~~~~lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK 293 (353)
||++ ...++++|.+|+++|||+||++||++|++++|++++.++.+++||.++|++|||+||++|++++++.+||
T Consensus 197 GQ~lDl~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK 276 (335)
T 2h8o_A 197 GQALDLAAEKKAPDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADAATMGK 276 (335)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCC
Confidence 9998 3578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhccC
Q 038854 294 TAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 353 (353)
Q Consensus 294 ~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~~~~~~~~~L~~l~~~i~~R~~ 353 (353)
++|+|+++||.|||++++++++++.++++.++|++.|+.||. ..+.|.+|++|+++|.+
T Consensus 277 ~~g~Dl~egK~T~p~l~~le~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~l~~~i~~R~~ 335 (335)
T 2h8o_A 277 ATGKDAARGKGTLVALRGEAWAREKLQEQVAEASELLAPYGE-KAAILIAAARFIAERKS 335 (335)
T ss_dssp ---------CCCHHHHHCHHHHHHHHHHHHHHHHHHTGGGGG-GGHHHHHHHHHHHC---
T ss_pred CcchHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999975 44889999999999974
No 7
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=100.00 E-value=6.8e-69 Score=513.43 Aligned_cols=281 Identities=38% Similarity=0.574 Sum_probs=238.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCCccccccHHHHHHHHHHHHHH
Q 038854 67 FDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLI 146 (353)
Q Consensus 67 ~~~~~~l~~~~~~v~~~l~~~~~~~~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~lA~avEliH~asLI 146 (353)
|+|..++.+....|++.|++.++...|+.+.++++|. ..||||+||.||+++++++|++.+.+.++|++|||||++|||
T Consensus 1 m~~~~~~~~~~~~ve~~l~~~~~~~~~~~l~~~~~y~-~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLI 79 (297)
T 3m0g_A 1 MSLSERLKEVQDAVETAMAAAIGRLPAGDLRDAMAYA-AQGGKRLRAFLAIESAAIHGISMAQAMPAALAVEALHAYSLV 79 (297)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHTSCCSHHHHHHHHH-HSCSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHH-cCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999998866677899999999 899999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhccc---
Q 038854 147 HDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQAE--- 223 (353)
Q Consensus 147 HDDI~~iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~l~~GQ~~--- 223 (353)
||||||||+|++|||+||+|++||+++|||+||+|++.||+.+++.... +++...+++..+++++|..+++.||.+
T Consensus 80 HDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~-~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~ 158 (297)
T 3m0g_A 80 HDDMPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVLG-SAENRVALVAALAQASGAEGMVYGQALDIA 158 (297)
T ss_dssp HHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGC-CHHHHHHHHHHHHHHHSTTTHHHHHHHHHH
T ss_pred hcCccccCCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHhHhHHHHhHHHHHH
Confidence 9999999999999999999999999999999999999999999875322 455577889999998877789999988
Q ss_pred -c----cCChhHHHHHHHhcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchh
Q 038854 224 -K----DLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKD 298 (353)
Q Consensus 224 -~----~~~~~~~~~i~~~KTg~L~~~~~~lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~D 298 (353)
. ++++++|..|+++|||+||++||++|++++|++++ .+++||.+||+||||+||++|++++++.+||++|+|
T Consensus 159 ~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~D 235 (297)
T 3m0g_A 159 AETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRG---PLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKD 235 (297)
T ss_dssp HTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHTTCC----------------
T ss_pred hhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcCCCHH---HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccch
Confidence 2 46789999999999999999999999999998876 899999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhccC
Q 038854 299 LVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 353 (353)
Q Consensus 299 l~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~~~~~~~~~L~~l~~~i~~R~~ 353 (353)
+++||+|||+++++++|++.++++.++|++.|+.||.+ .+.|.+|++|+++|.+
T Consensus 236 l~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~~~-~~~L~~l~~~~~~R~~ 289 (297)
T 3m0g_A 236 AEAHKATFVSLLGLAGAKSRAADLVAEAEAALAPYGEA-ASTLRACARYVIERDK 289 (297)
T ss_dssp -----CCHHHHHCSSHHHHHHHHHHHHHHHHTGGGGGG-GHHHHHHHHHHTC---
T ss_pred hhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999864 4899999999999964
No 8
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=1.3e-68 Score=516.31 Aligned_cols=282 Identities=37% Similarity=0.605 Sum_probs=242.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCC--CchhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCCccccccHHHHHHHHHHHHHH
Q 038854 69 FKSYMIQKASTVNQALDAAVSLK--DPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLI 146 (353)
Q Consensus 69 ~~~~l~~~~~~v~~~l~~~~~~~--~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~lA~avEliH~asLI 146 (353)
+...+++++..|++.|++.++.. .|+.+.++++|.+..||||+||.||+++++++|++.+.++++|++|||||+||||
T Consensus 33 ~~~~l~~~~~~ve~~l~~~l~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSLI 112 (324)
T 3uca_A 33 TAMNINSLKEEVDQSLKAYFNKDREYNKVLYDSMAYSINVGGKRIRPILMLLSYYIYKSDYKKILTPAMAIEMIHTYSLI 112 (324)
T ss_dssp -CCCHHHHHHHHHHHHHHHHCCCCSSCHHHHHHHHHHHHHCCCCHHHHHHHHHHHTTCSCGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44556778888999999999864 3678999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhccCCCChHHH-HHHHHHHHHHHhhhhhhhhccc--
Q 038854 147 HDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARI-VRAIAELAKYIGADGLVAGQAE-- 223 (353)
Q Consensus 147 HDDI~~iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~~~~~~~~~-~~~~~~l~~~i~~~~l~~GQ~~-- 223 (353)
||||||||+|++|||+||+|++||+++|||+||+|++.||+.+++.. .+++.. .+++..++++.|..+++.||.+
T Consensus 113 HDDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~--~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl 190 (324)
T 3uca_A 113 HDDLPCMDNDDLRRGKPTNHKVFGEAIAVLAGDALLNEAMKILVDYS--LEEGKSALKATKIIADAAGSDGMIGGQIVDI 190 (324)
T ss_dssp HHTSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHSTTTHHHHHHHHH
T ss_pred HCCchhccCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHHHHhHhHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999998642 222234 6788888888776789999998
Q ss_pred ----c-cCChhHHHHHHHhcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchh
Q 038854 224 ----K-DLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKD 298 (353)
Q Consensus 224 ----~-~~~~~~~~~i~~~KTg~L~~~~~~lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~D 298 (353)
. ++++++|..|+++|||+||++||++|++++|++++.++.+++||.++|+||||+||++|++++++++||++|+|
T Consensus 191 ~~~~~~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~D 270 (324)
T 3uca_A 191 INEDKEEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKD 270 (324)
T ss_dssp HTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------
T ss_pred HcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchH
Confidence 2 57899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhccC
Q 038854 299 LVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 353 (353)
Q Consensus 299 l~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~~~~~~~~~L~~l~~~i~~R~~ 353 (353)
+++||+|||+++++++|++.++++.++|++.|+.||.+ .+.|.++++|+++|++
T Consensus 271 l~egK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~~-~~~L~~la~~i~~R~~ 324 (324)
T 3uca_A 271 QESNKNNYITIFGLEECKKKCVNITEECIEILSSIKGN-TEPLKVLTMKLLERKF 324 (324)
T ss_dssp ------CHHHHHCHHHHHHHHHHHHHHHHHHHHTSSSC-CHHHHHHHHHHHHCCC
T ss_pred hhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999853 4899999999999975
No 9
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=100.00 E-value=2.5e-68 Score=510.34 Aligned_cols=279 Identities=38% Similarity=0.592 Sum_probs=240.5
Q ss_pred HHHHHHHHHHHHHHHHHhCC-CCchhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCCcc-ccccHHHHHHHHHHHHHHHh
Q 038854 71 SYMIQKASTVNQALDAAVSL-KDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHES-MAMPAACSIEMIHTMSLIHD 148 (353)
Q Consensus 71 ~~l~~~~~~v~~~l~~~~~~-~~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~~~-~~~~lA~avEliH~asLIHD 148 (353)
.+-++....|++.|.+.++. ..|+.+.++++|.+..||||+||.||+++++++|++.+ .++++|++|||||++|||||
T Consensus 12 ~~~~~~~~~ve~~l~~~l~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~~A~avEliH~asLIHD 91 (302)
T 3p8l_A 12 NFSQQHLPLVEKVMVDFIAEYTENERLKEAMLYSIHAGGKRLRPLLVLTTVAAFQKEMETQDYQVAASLEMIHTYSLIHD 91 (302)
T ss_dssp THHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHC
Confidence 34456667788888888764 35678999999999999999999999999999999888 89999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhccc-----
Q 038854 149 DLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQAE----- 223 (353)
Q Consensus 149 DI~~iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~l~~GQ~~----- 223 (353)
||||||+|++|||+||+|++||+++|||+||+|++.||+.+++. +.+++...+++..+++++|..+++.||++
T Consensus 92 DIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~--~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~ 169 (302)
T 3p8l_A 92 DLPAMDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLSLS--QLGLSEKVLLMQQLAKAAGNQGMVSGQMGDIEGE 169 (302)
T ss_dssp HSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTS--SCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTT
T ss_pred CchhccCCCccCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999863 45666677889999998876789999998
Q ss_pred -ccCChhHHHHHHHhcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcC
Q 038854 224 -KDLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVAD 302 (353)
Q Consensus 224 -~~~~~~~~~~i~~~KTg~L~~~~~~lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~g 302 (353)
.++++++|..|+++|||+||++||++|++++|++++.++.+++||.++|+||||+||++|++++++.+||++|+|+++|
T Consensus 170 ~~~~t~~~y~~i~~~KTg~L~~~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~eg 249 (302)
T 3p8l_A 170 KVSLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALN 249 (302)
T ss_dssp TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----------------
T ss_pred CCCCCHHHHHHHHHcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcC
Confidence 3468899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHhHHHHHHHHHHHHHHHHHHHhcCCC----CChHHHHHHHHHHHhc
Q 038854 303 KLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQ----EKAVPLIALANYIAYR 351 (353)
Q Consensus 303 k~T~p~l~~le~a~~~~~~~~~~A~~~L~~~~~----~~~~~L~~l~~~i~~R 351 (353)
|+|||+++++++|++.++++.++|++.|+.||+ ...+.|.+|++|+.+|
T Consensus 250 K~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~~~~~~~~~~~L~~l~~~~~~R 302 (302)
T 3p8l_A 250 KSTYPALLGIAGAKDALTHQLAEGSAVLEKIKANVPNFSEEHLANLLTQLQLR 302 (302)
T ss_dssp -CCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHTSCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCChhHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999963 4458999999999987
No 10
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=100.00 E-value=1.7e-68 Score=512.51 Aligned_cols=285 Identities=36% Similarity=0.538 Sum_probs=252.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhCCC-CchhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCCcccc--ccHHHHHHHHHHH
Q 038854 67 FDFKSYMIQKASTVNQALDAAVSLK-DPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMA--MPAACSIEMIHTM 143 (353)
Q Consensus 67 ~~~~~~l~~~~~~v~~~l~~~~~~~-~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~~~~~--~~lA~avEliH~a 143 (353)
.+|..++++....|++.|.+.++.. .|+.+.++++|.+..||||+||.||+++++++|++.+.+ .++|++|||||++
T Consensus 6 ~~~~~~~~~~~~~ve~~l~~~l~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~~~A~aiEliH~a 85 (309)
T 3pde_A 6 ARLIAFEDQWVPALNAPLKQAILADSQDAQLAAAMTYSVLAGGKRLRPLLTVATMQSLGVTFVPERHWRPVMALELLHTY 85 (309)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHTCSCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHhHhHHHHHHHHHHHH
Confidence 3688999999999999999988754 467899999999999999999999999999999999888 9999999999999
Q ss_pred HHHHhCCCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhccc
Q 038854 144 SLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQAE 223 (353)
Q Consensus 144 sLIHDDI~~iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~l~~GQ~~ 223 (353)
|||||||||||+|++|||+||+|++||+++|||+||+|++.||+.+++. +.+++...+++..+++++|..+++.||++
T Consensus 86 SLIHDDiP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~--~~~~~~~~~~~~~l~~a~g~~~m~~GQ~l 163 (309)
T 3pde_A 86 SLIHDDLPAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTAT--DLPATMQAALVQALATAAGPSGMVAGQAK 163 (309)
T ss_dssp HHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHTSS--SCCHHHHHHHHHHHHHHHSTTTHHHHHHH
T ss_pred HHHHCCchhccCCCCCCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHhhHhHHHHhHHH
Confidence 9999999999999999999999999999999999999999999999864 44566677889999998876789999998
Q ss_pred ------ccCChhHHHHHHHhcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcch
Q 038854 224 ------KDLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGK 297 (353)
Q Consensus 224 ------~~~~~~~~~~i~~~KTg~L~~~~~~lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~ 297 (353)
..+++++|.+|+++|||+||++||++|++++|++++.++.+++||.++|+||||+||++|++++++.+||++|+
T Consensus 164 Dl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~ 243 (309)
T 3pde_A 164 DIQSEHVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQK 243 (309)
T ss_dssp HHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccc
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHhccC
Q 038854 298 DLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEK-AVPLIALANYIAYRQN 353 (353)
Q Consensus 298 Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~~~~~~-~~~L~~l~~~i~~R~~ 353 (353)
|+++||+|||++++++++++.++++.++|.+.|+.+|..- .+.|.++++|+++|++
T Consensus 244 Dl~egK~T~p~l~al~~a~~~~~~~~~~a~~~l~~~~~~~~~~~L~~l~~~~~~r~~ 300 (309)
T 3pde_A 244 DADEAKNTYPGKLGLIGANQALIDTIHSGQAALQGLPTSTQRDDLAAFFSYFDTERV 300 (309)
T ss_dssp -CTTTSSSHHHHHCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHGGGGGSCTTTT
T ss_pred hhhcCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999954321 2239999999999974
No 11
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=100.00 E-value=2.4e-68 Score=510.96 Aligned_cols=281 Identities=39% Similarity=0.575 Sum_probs=229.0
Q ss_pred HHHHHHHHHHHHHHHHhCCC--CchhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCCccccccHHHHHHHHHHHHHHHhC
Q 038854 72 YMIQKASTVNQALDAAVSLK--DPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDD 149 (353)
Q Consensus 72 ~l~~~~~~v~~~l~~~~~~~--~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~lA~avEliH~asLIHDD 149 (353)
-+.+.+..|++.|++.++.. .|+.+.++++|.+..||||+||.||+++++++|++++.+.++|++|||||++||||||
T Consensus 12 ~~~~~~~~ve~~l~~~l~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~asLIHDD 91 (302)
T 3p8r_A 12 ALSSYQQRNNQQLDQWLNRIPFQTLPLIEAMRYGLLLGGKRARPYLVYITGQMLGCELSDLDTPASAVECIHAYSLIHDD 91 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCTTSSHHHHHHHHHHSCCSCHHHHHHHHHHHTTTCCGGGTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 35666778999999988764 3678999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhcc-CCCChHHHHHHHHHHHHHHhhhhhhhhccc-----
Q 038854 150 LPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCT-KGVSPARIVRAIAELAKYIGADGLVAGQAE----- 223 (353)
Q Consensus 150 I~~iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~-~~~~~~~~~~~~~~l~~~i~~~~l~~GQ~~----- 223 (353)
|||||+|++|||+||+|++||+++|||+||+|++.||+.+++.. .+.+++...+++..+++++|..+++.||++
T Consensus 92 Ip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~ 171 (302)
T 3p8r_A 92 LPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQALAEASGAQGMCLGQALDLAAE 171 (302)
T ss_dssp CHHHHCCC--------------HHHHHHHHHHHHHHHHHHHHSCCCHHHHTTHHHHHHHHHHHHSTTTHHHHHHHHHHTT
T ss_pred cccccCCCcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhHhHHHHhHHHHHHcc
Confidence 99999999999999999999999999999999999999999752 112233466788889988776689999998
Q ss_pred -ccCChhHHHHHHHhcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhc
Q 038854 224 -KDLGIEHLEFIHEHKTAALLEAAVVLGAILGG-GTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVA 301 (353)
Q Consensus 224 -~~~~~~~~~~i~~~KTg~L~~~~~~lga~lag-~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~ 301 (353)
.++++++|..|+++|||+||++||++|++++| ++++.++.+++||.++|++|||+||++|++++++.+||+.|+|+++
T Consensus 172 ~~~~s~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~e 251 (302)
T 3p8r_A 172 NRLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQEL 251 (302)
T ss_dssp TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC--------------
T ss_pred CCCCCHHHHHHHhccCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHHhc
Confidence 35688999999999999999999999999999 7888889999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhccC
Q 038854 302 DKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 353 (353)
Q Consensus 302 gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~~~~~~~~~L~~l~~~i~~R~~ 353 (353)
||+|||+++|+++|++.++++.++|++.|+.||.+ .+.|.+|++|+++|++
T Consensus 252 gK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~-~~~L~~l~~~~~~R~~ 302 (302)
T 3p8r_A 252 NKSTYPALLGLEGAQQKAHTLLQEALLALEAIPYN-TEHLEEFARYVVERKN 302 (302)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC-THHHHHHHHHHHHCCC
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-HHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999864 5899999999999975
No 12
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=100.00 E-value=1.8e-67 Score=504.92 Aligned_cols=282 Identities=38% Similarity=0.567 Sum_probs=245.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhCCC-CchhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCCccccccHHHHHHHHHHHHH
Q 038854 67 FDFKSYMIQKASTVNQALDAAVSLK-DPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSL 145 (353)
Q Consensus 67 ~~~~~~l~~~~~~v~~~l~~~~~~~-~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~lA~avEliH~asL 145 (353)
|+|.. ....|++.|.+.+... .|+.+.++++|.+..||||+||.||+++++++|++++.++++|++|||||++||
T Consensus 4 m~~~~----~~~~v~~~l~~~l~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asL 79 (301)
T 1rtr_A 4 LPMNK----LIDEVNNELSVAINKSVMDTQLEESMLYSLNAGGKRIRPVLLLLTLDSLNTEYELGMKSAIALEMIHTYSL 79 (301)
T ss_dssp CCHHH----HHHHHHHHHHTSSCCCSSCCSHHHHHHHHHTSCCCCHHHHHHHHHHHHTTSCGGGGHHHHHHHHHHHHHHH
T ss_pred CCHHH----HHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 55554 5567999999988652 356799999999999999999999999999999988888999999999999999
Q ss_pred HHhCCCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhccc--
Q 038854 146 IHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQAE-- 223 (353)
Q Consensus 146 IHDDI~~iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~l~~GQ~~-- 223 (353)
|||||||||+|++|||+||+|++||+++|||+||+|++.||+.+++.. +++++...+++..+++++|..+++.||++
T Consensus 80 iHDDiP~~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~-~~~~~~~~~~~~~ls~~~g~~~~~~GQ~~Dl 158 (301)
T 1rtr_A 80 IHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDD-RLTDEVKIKVLQRLSIASGHVGMVGGQMLDM 158 (301)
T ss_dssp HHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTCT-TSCHHHHHHHHHHHHHHHSTTTHHHHHHHHH
T ss_pred HhCCchhccCCCccCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998742 34556778889999998877789999998
Q ss_pred ----ccCChhHHHHHHHhcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhh
Q 038854 224 ----KDLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDL 299 (353)
Q Consensus 224 ----~~~~~~~~~~i~~~KTg~L~~~~~~lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl 299 (353)
...++++|..|+++|||+||++||++|++++|++++.++.+++||.++|++|||+||++|++++++.+||+.|+|+
T Consensus 159 ~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl 238 (301)
T 1rtr_A 159 QSEGQPIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDL 238 (301)
T ss_dssp HTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------
T ss_pred HccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHH
Confidence 3478899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCCh-HHHHHHHHHHHhccC
Q 038854 300 VADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKA-VPLIALANYIAYRQN 353 (353)
Q Consensus 300 ~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~~~~~~~-~~L~~l~~~i~~R~~ 353 (353)
++||+|||++++++++++.++++.++|++.|+.||++.. +.|.++++|+++|++
T Consensus 239 ~~gK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~~~~~~~L~~l~~~i~~R~~ 293 (301)
T 1rtr_A 239 ENNKSTYVSLLGKDGAEDKLTYHRDAAVDELTQIDEQFNTKHLLEIVDLFYSRDH 293 (301)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTSCCHHHHHHHHHHHCC--
T ss_pred HcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999986554 899999999999974
No 13
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=100.00 E-value=5.4e-67 Score=502.98 Aligned_cols=284 Identities=36% Similarity=0.509 Sum_probs=247.9
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHhCC--CCchhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCCc------cccccHHH
Q 038854 64 SPTFDFKSYMIQKASTVNQALDAAVSL--KDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHE------SMAMPAAC 135 (353)
Q Consensus 64 ~~~~~~~~~l~~~~~~v~~~l~~~~~~--~~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~~------~~~~~lA~ 135 (353)
-+.|+|..++.+... |++.|++.++. ..|+.+.++++|.+..||||+||+||+++++++|++. +.+.++|+
T Consensus 3 ~~~~~~~~~~~~~~~-ve~~l~~~~~~~~~~~~~l~~a~~y~~~~gGKrlRp~Lvl~~~~~~g~~~~~~~~~~~~~~~A~ 81 (311)
T 3llw_A 3 LSSPNLSFYYNECER-FESFLKNHHLHLESFHPYLEKAFFEMVLNGGKRFRPKLFLAVLCALVGQKDYSNQQTEYFKIAL 81 (311)
T ss_dssp CCCHHHHHHHHHHHH-HHHHHHTCCCCCCSSCSSHHHHHHHHHHSCCCCHHHHHHHHHHHHHSCHHHHHHSHHHHHHHHH
T ss_pred CccccHHHHHHHHHH-HHHHHHHHhhhccCCcHHHHHHHHHHhhCCCCchHHHHHHHHHHHhCCCcccccchHHHHHHHH
Confidence 357899999999888 99999999864 2467899999999999999999999999999999988 88899999
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhh
Q 038854 136 SIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGAD 215 (353)
Q Consensus 136 avEliH~asLIHDDI~~iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~ 215 (353)
+|||||++|||||||||||+|++|||+||+|++||+.+|||+||+|++.||+.+++. .+++....+++..++++.|..
T Consensus 82 aiEliH~aSLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~--~~~~~~~~~~i~~la~a~g~~ 159 (311)
T 3llw_A 82 SIECLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNA--LLESHIIVELIKILSANGGIK 159 (311)
T ss_dssp HHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHHS--CSCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHCCccccCCCcccCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999862 345666778899999987667
Q ss_pred hhhhhccc------ccCChhHHHHHHHhcHHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHHHHHHHhhhhhhhcccch
Q 038854 216 GLVAGQAE------KDLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEV-EKLRTFARCIGLLFQVVDDILDLTKSS 288 (353)
Q Consensus 216 ~l~~GQ~~------~~~~~~~~~~i~~~KTg~L~~~~~~lga~lag~~~~~~-~~l~~~g~~lG~afQI~DDild~~~~~ 288 (353)
+++.||.+ ..+++++|..|+++|||+||++||++|++++|++++.+ +.+++||.+||+||||+||++|+++++
T Consensus 160 ~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~lga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~ 239 (311)
T 3llw_A 160 GMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDE 239 (311)
T ss_dssp THHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHhHHHHHHhcCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence 89999988 35688999999999999999999999999999998888 999999999999999999999999999
Q ss_pred hhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHHhcCCC--CC-hHHHHHHHHHHHhcc
Q 038854 289 KELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQ--EK-AVPLIALANYIAYRQ 352 (353)
Q Consensus 289 ~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~~~~--~~-~~~L~~l~~~i~~R~ 352 (353)
+.+||+.|+ ++||+|||++++++++++.++++.++|.+.|+.|+. .+ ++.|.++++|+++|.
T Consensus 240 ~~~GK~~g~--~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~l~~~~~~r~ 304 (311)
T 3llw_A 240 EESGKTTHL--DSAKNSFVNLLGLERANNYAQTLKTEVLNDLDALKPAYPLLQENLNALLNTLFKGE 304 (311)
T ss_dssp -------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTTCHHHHHHHHHHHHHHHC--
T ss_pred HHHCccccc--ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccHHHHHHHHHHHHHhcc
Confidence 999999877 999999999999999999999999999999999543 23 578999999999995
No 14
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=100.00 E-value=4.1e-65 Score=496.53 Aligned_cols=278 Identities=32% Similarity=0.437 Sum_probs=229.9
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCCccccccHHHHHHHHHH
Q 038854 63 PSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHT 142 (353)
Q Consensus 63 ~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~lA~avEliH~ 142 (353)
++++.++++++.+++..|++.|++.+...+| .+.++++|.+..||||+||+||+++++++|++.+.++++|++|||||+
T Consensus 21 ~~~~~~l~~~l~~~l~~v~~~l~~~l~~~~~-~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~~A~aiEliH~ 99 (345)
T 3oyr_A 21 SGSVDRLVRLAEADMAGVNRLITDRMQSDVA-IIPALAEHLIAAGGKRLRPLMTVAAARLAGADNDHFQKLAAAVEFIHT 99 (345)
T ss_dssp CCCSHHHHHHTHHHHHHHHHHHHHHTCCSST-HHHHHHHHHHTTTCCCHHHHHHHHHHHHTTCCSSTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhccCCh-hHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 5778999999999999999999999988755 799999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcc
Q 038854 143 MSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQA 222 (353)
Q Consensus 143 asLIHDDI~~iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~l~~GQ~ 222 (353)
+||||||| ||+|++|||+||+|++||+++|||+||||++.||+.+++.. ..+++..+++++ .+++.||+
T Consensus 100 asLiHDDi--~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~-------~~~~~~~~~~~~--~~~~~GQ~ 168 (345)
T 3oyr_A 100 ATLLHDDV--VDGSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFELMVETN-------SMKALEILARAS--RVIAEGEV 168 (345)
T ss_dssp HHHHTTTT--C---------CCCSCCTTHHHHHHHHHHHHHHHHHHHHTTT-------CHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHCcc--cCCCCCCCCCccHHHhhCHHHHHHHHHHHHHHHHHHHHhCC-------cHHHHHHHHHHH--HHHHHHHH
Confidence 99999999 99999999999999999999999999999999999998652 134556667766 36999999
Q ss_pred c-------ccCChhHHHHHHHhcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCc
Q 038854 223 E-------KDLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTA 295 (353)
Q Consensus 223 ~-------~~~~~~~~~~i~~~KTg~L~~~~~~lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~ 295 (353)
+ .++++++|..|+++|||+||++||++|++++|++++.++.+++||+++|+||||+||++|++++++.+||+.
T Consensus 169 ~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~~ 248 (345)
T 3oyr_A 169 LQLMRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETLGKNA 248 (345)
T ss_dssp HHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-----------
T ss_pred HHHHcCCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCc
Confidence 8 247899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcCCCcHHHHHhH--------------------------------------HHHHHHHHHHHHHHHHHHhcCCCCC
Q 038854 296 GKDLVADKLTYPKLLGI--------------------------------------EESKKLADKLNKDAQQQLSEFDQEK 337 (353)
Q Consensus 296 g~Dl~~gk~T~p~l~~l--------------------------------------e~a~~~~~~~~~~A~~~L~~~~~~~ 337 (353)
|+|+++||+|||+++++ +++++.++++.++|++.|+.||++.
T Consensus 249 g~Dl~egK~TlP~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~v~~~i~~~gale~a~~~a~~~~~~A~~~L~~lp~~~ 328 (345)
T 3oyr_A 249 GDDFREGKATLPLLLAIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATLDLAADYADKAKAALAMFPAND 328 (345)
T ss_dssp --------CCHHHHHHHHHSCSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTSCSSH
T ss_pred cchhhcCchHHHHHHHHHhCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCcH
Confidence 99999999999999854 6788999999999999999999876
Q ss_pred h-HHHHHHHHHHHhcc
Q 038854 338 A-VPLIALANYIAYRQ 352 (353)
Q Consensus 338 ~-~~L~~l~~~i~~R~ 352 (353)
. +.|.+|++|+++|.
T Consensus 329 ~~~~L~~la~~~~~R~ 344 (345)
T 3oyr_A 329 WREALEELADFAVSRR 344 (345)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcc
Confidence 6 89999999999996
No 15
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=100.00 E-value=1.7e-64 Score=491.92 Aligned_cols=281 Identities=31% Similarity=0.471 Sum_probs=242.5
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCCccccccHHHHHHHHH
Q 038854 62 APSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIH 141 (353)
Q Consensus 62 ~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~lA~avEliH 141 (353)
.|+++.+++++++++++.|++.|.+.+....++.+.++++|.+..||||+||+||+++++++|++.+.++++|++||+||
T Consensus 7 ~~~~~~~l~~~l~~~l~~v~~~l~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~A~aiEliH 86 (341)
T 3mzv_A 7 ATKPHDRLAQALAEDMAAVNALIRERMSSEHAPRIPEVTAHLIEAGGKRLRPMLTLAAARLVGYGGPFHVHLAATVEFIH 86 (341)
T ss_dssp --CHHHHHHHHTHHHHHHHHHHHHHHSCCSSCTHHHHHHHHHHHSCCCCHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 36788899999999999999999999987735689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhc
Q 038854 142 TMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQ 221 (353)
Q Consensus 142 ~asLIHDDI~~iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~l~~GQ 221 (353)
++||||||| ||+|++|||+||+|.+||+++|||+||||++.||+.+++.. ..+++..+++++ .+++.||
T Consensus 87 ~asLiHDDI--~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~-------~~~~~~~~~~~~--~~~~~GQ 155 (341)
T 3mzv_A 87 TATLLHDDV--VDESRQRRGRPTANLLWDNKSSVLVGDYLFARSFQLMTDTG-------NMRVMEILANAS--AVIAEGE 155 (341)
T ss_dssp HHHHHHHHC--------CTTSCCHHHHSCHHHHHHHHHHHHHHHHHHHGGGC-------CHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHcCc--cCCCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCC-------cHHHHHHHHHHH--HHHHHHH
Confidence 999999999 99999999999999999999999999999999999998652 134555666665 4799999
Q ss_pred cc-------ccCChhHHHHHHHhcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCC
Q 038854 222 AE-------KDLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKT 294 (353)
Q Consensus 222 ~~-------~~~~~~~~~~i~~~KTg~L~~~~~~lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~ 294 (353)
++ .++++++|..|+++|||+||++||++|++++|++++.++.+++||.++|+||||+||++|++++++.+||+
T Consensus 156 ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~ 235 (341)
T 3mzv_A 156 VLQLTAAQNLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEIGKN 235 (341)
T ss_dssp HHHHHHTTCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCC
Confidence 98 25788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCCcHHHHHh--------------------------------------HHHHHHHHHHHHHHHHHHHhcCCCC
Q 038854 295 AGKDLVADKLTYPKLLG--------------------------------------IEESKKLADKLNKDAQQQLSEFDQE 336 (353)
Q Consensus 295 ~g~Dl~~gk~T~p~l~~--------------------------------------le~a~~~~~~~~~~A~~~L~~~~~~ 336 (353)
.|+|+++||+|||++++ ++++++.++++.++|++.|+.||++
T Consensus 236 ~g~Dl~egK~Tlp~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~l~~~ga~~~a~~~a~~~~~~A~~~L~~lp~~ 315 (341)
T 3mzv_A 236 TGDDFRERKLTMPVIKAVALADEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATRLAAIGWTDTARKALAKLPDH 315 (341)
T ss_dssp CCHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCcccccCchhHHHHHHHHhCCHhHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999974 5778899999999999999999987
Q ss_pred Ch-HHHHHHHHHHHhccC
Q 038854 337 KA-VPLIALANYIAYRQN 353 (353)
Q Consensus 337 ~~-~~L~~l~~~i~~R~~ 353 (353)
.. +.|.+|++|+++|.+
T Consensus 316 ~~~~~L~~la~~~~~r~~ 333 (341)
T 3mzv_A 316 PLRQMLDDLADYVVERVR 333 (341)
T ss_dssp HHHHHHHHHHHHHTGGGC
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 76 899999999999974
No 16
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=100.00 E-value=1.6e-63 Score=476.08 Aligned_cols=274 Identities=73% Similarity=1.174 Sum_probs=248.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCCccccccHHHHHHHHHHHHH
Q 038854 66 TFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSL 145 (353)
Q Consensus 66 ~~~~~~~l~~~~~~v~~~l~~~~~~~~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~lA~avEliH~asL 145 (353)
.-||..++.+++..|++.|++.++...|+.+.++++|.+..||||+||.||+++++++|++++.++++|++||+||++||
T Consensus 10 ~~~~~~~~~~~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asL 89 (293)
T 2j1p_A 10 HTDPISYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLAMPAACAVEMIHTMSL 89 (293)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHHHTSCCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999876677899999999999999999999999999999988888999999999999999
Q ss_pred HHhCCCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhccCC-CChHHHHHHHHHHHHHHhhhhhhhhcccc
Q 038854 146 IHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKG-VSPARIVRAIAELAKYIGADGLVAGQAEK 224 (353)
Q Consensus 146 IHDDI~~iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~~~-~~~~~~~~~~~~l~~~i~~~~l~~GQ~~~ 224 (353)
|||||||||+|++|||+||+|++||+++|||+||+|++.||+.+++...+ .++..+.+++.++++++|..+++.||+++
T Consensus 90 iHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~D 169 (293)
T 2j1p_A 90 IHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVD 169 (293)
T ss_dssp HHHTSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHT
T ss_pred HHCCchhccCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999876322 45667788889999887767899999982
Q ss_pred ---------cCChhHHHHHHHhcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCc
Q 038854 225 ---------DLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTA 295 (353)
Q Consensus 225 ---------~~~~~~~~~i~~~KTg~L~~~~~~lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~ 295 (353)
+.++++|..|+++|||+||++||++|++++|++++..+.+++||.++|++|||+||++|+++++
T Consensus 170 l~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~~~------- 242 (293)
T 2j1p_A 170 ISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSS------- 242 (293)
T ss_dssp TC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-------
Confidence 2356789999999999999999999999999999999999999999999999999999998764
Q ss_pred chhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhccC
Q 038854 296 GKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 353 (353)
Q Consensus 296 g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~~~~~~~~~L~~l~~~i~~R~~ 353 (353)
|.|||+++|+++|++.++++.++|++.|+.||+...+.|.++++|+++|.+
T Consensus 243 -------K~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R~~ 293 (293)
T 2j1p_A 243 -------KLTYPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIANRQN 293 (293)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTTSCTTTTHHHHHHHHHHHHCCC
T ss_pred -------cccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999975445899999999999975
No 17
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=100.00 E-value=1.2e-63 Score=475.66 Aligned_cols=269 Identities=34% Similarity=0.480 Sum_probs=228.8
Q ss_pred HHHHHHHHHHhCCC--CchhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCC-ccccccHHHHHHHHHHHHHHHhCCCCCC
Q 038854 78 STVNQALDAAVSLK--DPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGH-ESMAMPAACSIEMIHTMSLIHDDLPCMD 154 (353)
Q Consensus 78 ~~v~~~l~~~~~~~--~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~-~~~~~~lA~avEliH~asLIHDDI~~iD 154 (353)
+.|++.|++.++.. .|+.+.++++|.+..||||+||.||+++++++|++ .+.+.++|++|||||++|||||||||||
T Consensus 7 ~~i~~~l~~~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~~~~~~~~~~~~A~aiEliH~aSLIHDDIp~mD 86 (291)
T 3npk_A 7 ELFIHHLEKNLPKVESFHPFFNEALALMLKAGGKHFRAQLLLSVVQSNKPELLNQALDVALALEFIHTYSLIHDDLPAMD 86 (291)
T ss_dssp HHHHHHHHTCCCCCCSSCSSHHHHHHHHHHHCCCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTSTTTT
T ss_pred HHHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCcchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHCCccccc
Confidence 45777787776532 35689999999999999999999999999999887 4788999999999999999999999999
Q ss_pred CCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhccc------ccCCh
Q 038854 155 NDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQAE------KDLGI 228 (353)
Q Consensus 155 ~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~l~~GQ~~------~~~~~ 228 (353)
+|++|||+||+|++||+++|||+||+|++.||+.+++. +.+++...+++..++++.|..+++.||.+ ..+++
T Consensus 87 ~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~--~~~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~~~~~~~~ 164 (291)
T 3npk_A 87 NADFRRGIPTLHKSYDETTAILVGDALNTEAFLVLSHA--HLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDKRLSL 164 (291)
T ss_dssp CCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHTS--SSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCCH
T ss_pred CCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCCH
Confidence 99999999999999999999999999999999999864 34556677888888888666789999988 34688
Q ss_pred hHHHHHHHhcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCcHHH
Q 038854 229 EHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPK 308 (353)
Q Consensus 229 ~~~~~i~~~KTg~L~~~~~~lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T~p~ 308 (353)
++|.+|+++|||+||++||++|++++|++++.++.+++||.+||+||||+||++|++++++.+||+.+.| +||+|||.
T Consensus 165 ~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~~~d--~gK~T~p~ 242 (291)
T 3npk_A 165 NELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNND--IHKNSFVN 242 (291)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------CCHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCCccchh--cCcchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999776 99999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHh
Q 038854 309 LLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAY 350 (353)
Q Consensus 309 l~~le~a~~~~~~~~~~A~~~L~~~~~~~~~~L~~l~~~i~~ 350 (353)
+++++.+++.++++.++|.+.|+.|+.+.++.|+++++|..+
T Consensus 243 l~~l~~a~~~~~~~~~~a~~~l~~~~~~~~~~l~~la~~~~~ 284 (291)
T 3npk_A 243 LLGLEQAIKTKENLLNECEQDLEKLNEKLAQMIQNLIIQYLE 284 (291)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHh
Confidence 999999999999999999999999975336899999998654
No 18
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-63 Score=474.64 Aligned_cols=262 Identities=30% Similarity=0.464 Sum_probs=228.6
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCCccccccHHHHHHHHHHHHHHHhCCCCCCC
Q 038854 76 KASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDN 155 (353)
Q Consensus 76 ~~~~v~~~l~~~~~~~~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~lA~avEliH~asLIHDDI~~iD~ 155 (353)
+.+.|++.|++.++...|+.+.++++|.+..||||+||.||+++++++|++++.++++|++||+||++|||||||||||+
T Consensus 14 ~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLIHDDIP~~D~ 93 (284)
T 2ftz_A 14 KXEXVEERIREILRPGWDLLTEEAMLYSATVGGXRIRPLLVLTLGEDLGVEEEXLLDVAVAVELFHTASLIHDDLPPIDN 93 (284)
T ss_dssp HHHHHHHHHHHHHSCSSCCHHHHHHHHHHHSCCCCHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSTTTTC
T ss_pred chHHHHHHHHHHhcccCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhCCchhcCC
Confidence 34678888888885445678999999999999999999999999999999888889999999999999999999999999
Q ss_pred CCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhccc------c--cCC
Q 038854 156 DPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQAE------K--DLG 227 (353)
Q Consensus 156 s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~l~~GQ~~------~--~~~ 227 (353)
|++|||+||+|.+||+++|||+||+|++.||+.+++. ++. +++..+++++ .+++.||++ . +.+
T Consensus 94 s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~----~~~---~~~~~l~~~~--~~~~~GQ~ldl~~~~~~~~~~ 164 (284)
T 2ftz_A 94 ADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISXI----GNS---XIFEEFSETA--YXLLLGEAMDVEFERRXMEVS 164 (284)
T ss_dssp CSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTT----CCH---HHHHHHHHHH--HHHHHHHHHHHHHHHSCCCCC
T ss_pred CCCCCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhC----ChH---HHHHHHHHHH--HHHhhhhHHHHHhccCcCCCC
Confidence 9999999999999999999999999999999999875 222 4566666665 579999998 2 678
Q ss_pred hhHHHHHHHhcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCcHH
Q 038854 228 IEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYP 307 (353)
Q Consensus 228 ~~~~~~i~~~KTg~L~~~~~~lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T~p 307 (353)
+++|..|+++|||+||++||++|++++|++++ .+++||.++|++|||+||++|++++++.+||+.|+|++ |+|||
T Consensus 165 ~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~--K~T~p 239 (284)
T 2ftz_A 165 QEMVERMYAFXTGALFAFCFSAPFILXGXDHT---XMXLLGEXFGVAFQIYDDLXDILGSFEKVGKDLGKDTE--XVTLV 239 (284)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------------CHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhCCChh---HHHHHHHHHHHHHHHHHhhhhhcCCHHhhCCCcchhcc--ccchH
Confidence 99999999999999999999999999998876 89999999999999999999999999999999999999 99999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhcCCCCChHH-HHHHHHHHHhc
Q 038854 308 KLLGIEESKKLADKLNKDAQQQLSEFDQEKAVP-LIALANYIAYR 351 (353)
Q Consensus 308 ~l~~le~a~~~~~~~~~~A~~~L~~~~~~~~~~-L~~l~~~i~~R 351 (353)
++++++++++.++++.++|++.|+.||+...+. |.+|++|+++|
T Consensus 240 ~l~~l~~a~~~a~~~~~~A~~~L~~l~~~~~~~~L~~l~~~~~~R 284 (284)
T 2ftz_A 240 XXVGIQXAREMADXYYEEVLXGIESEGLFRTLFLLXELXQMVEER 284 (284)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHcC
Confidence 999999999999999999999999998622377 99999999987
No 19
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=4.4e-63 Score=482.76 Aligned_cols=280 Identities=36% Similarity=0.548 Sum_probs=256.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCCccccccHHHHHHHHHHHHHHH
Q 038854 68 DFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIH 147 (353)
Q Consensus 68 ~~~~~l~~~~~~v~~~l~~~~~~~~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~lA~avEliH~asLIH 147 (353)
++...+.+++..|++.|.+.++...|+.+.++++|++..||||+||.||+++++++|++++.++++|++|||||+|||||
T Consensus 6 ~~~~~~~~~~~~v~~~l~~~~~~~~~~~l~~~~~~~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~A~avEliH~asLiH 85 (342)
T 1wy0_A 6 ELFARIKEKAKLIDEKIFELIPEKDPRVLYEAARHYPLAGGKRVRPFVVLTSTEAVGGDPLRAIYPAVAIELIHNYSLVH 85 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHTGGGTCCCHHHHHHHHHTTTTTSCGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888899999999999977535689999999999999999999999999999998888999999999999999999
Q ss_pred hCCCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhccc----
Q 038854 148 DDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQAE---- 223 (353)
Q Consensus 148 DDI~~iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~l~~GQ~~---- 223 (353)
||| ||+|++|||+||+|.+||+++|||+||||++.||+.+++. ..+++...+++..+++++ .+++.||++
T Consensus 86 DDi--~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~--~~~~~~~~~~~~~~~~~~--~~~~~GQ~~dl~~ 159 (342)
T 1wy0_A 86 DDI--MDMDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARA--EIPPEKKARVLEVIVKAS--NELCEGQARDLEF 159 (342)
T ss_dssp HHH--HHTCCCSTTSCCHHHHHCHHHHHHHHHHHHHHHHHHHHTC--CSCHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred CCc--ccCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHHc--ccCcccHHHHHHHHHHHH--HHHHHHHHHHHHc
Confidence 999 9999999999999999999999999999999999999975 345556677888888876 589999998
Q ss_pred ---ccCChhHHHHHHHhcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhh
Q 038854 224 ---KDLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLV 300 (353)
Q Consensus 224 ---~~~~~~~~~~i~~~KTg~L~~~~~~lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~ 300 (353)
...++++|..|+++|||+||++||++|++++|++++.++.+++||.++|+||||+||++|++++++.+||+.|+|++
T Consensus 160 ~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~ 239 (342)
T 1wy0_A 160 EKKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIR 239 (342)
T ss_dssp TTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTSCSCHHHH
T ss_pred ccCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhHHh
Confidence 25689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHhHH-------------------------------------------------HHHHHHHHHHHHHHHHHh
Q 038854 301 ADKLTYPKLLGIE-------------------------------------------------ESKKLADKLNKDAQQQLS 331 (353)
Q Consensus 301 ~gk~T~p~l~~le-------------------------------------------------~a~~~~~~~~~~A~~~L~ 331 (353)
+||+|||++++++ ++++.++++.++|++.|+
T Consensus 240 egK~Tlp~i~al~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~ 319 (342)
T 1wy0_A 240 KGKKTLIVAHFFENADEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKKYGSIDYAAEIAKDMIKKANEALR 319 (342)
T ss_dssp HTCCCHHHHHHHHHCCHHHHHHHHHTSCC-------------CHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTGG
T ss_pred CCCCcHHHHHHHHhCCHhHHHHHHHHHcccccccccccccccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999775 567888999999999999
Q ss_pred cCCCCCh-HHHHHHHHHHHhccC
Q 038854 332 EFDQEKA-VPLIALANYIAYRQN 353 (353)
Q Consensus 332 ~~~~~~~-~~L~~l~~~i~~R~~ 353 (353)
.+|++.. +.|.++++|+.+|.+
T Consensus 320 ~l~~~~~~~~L~~l~~~~~~R~~ 342 (342)
T 1wy0_A 320 ILPKSKARMDLELLAKFIVEREY 342 (342)
T ss_dssp GSCCCHHHHHHHHHHHHTTTCC-
T ss_pred hCCCcHHHHHHHHHHHHHHhccC
Confidence 9986655 889999999999974
No 20
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=100.00 E-value=1.5e-62 Score=480.52 Aligned_cols=274 Identities=29% Similarity=0.426 Sum_probs=234.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHhHhCCCcchHHHHHHHHHHHhC-CCccccccHHHHHHHHHHHHH
Q 038854 67 FDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVG-GHESMAMPAACSIEMIHTMSL 145 (353)
Q Consensus 67 ~~~~~~l~~~~~~v~~~l~~~~~~~~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g-~~~~~~~~lA~avEliH~asL 145 (353)
.+|..++.+++..|++.|++.+... ++.+.++++|++..||||+||+||+++++++| ++.+.++++|++|||||+|||
T Consensus 34 ~~~~~~l~~~l~~ve~~l~~~~~~~-~~~l~~~~~y~~~~gGKrlRp~L~ll~~~~~~~~~~~~~~~~A~avEliH~asL 112 (360)
T 3lmd_A 34 PELTARINDAMVQVEELLHTELSSG-EDFLVDIVMHLTRAGGKRFRPMFALLASEFGEKPLSENVIKAAVVVEITHLATL 112 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCS-CHHHHHHHHHHCCCCSCCHHHHHHHHHHTTSSSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-cHHHHHHHHHHHHCCCCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999876 45899999999999999999999999999998 778889999999999999999
Q ss_pred HHhCCCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhccc--
Q 038854 146 IHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQAE-- 223 (353)
Q Consensus 146 IHDDI~~iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~l~~GQ~~-- 223 (353)
||||| ||+|++|||+||+|++||+++|||+||||++.||+.++++. + +++..+++++ .+++.||++
T Consensus 113 IHDDI--mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~----~----~~~~~~~~~~--~~~~~GQ~ldl 180 (360)
T 3lmd_A 113 YHDDV--MDEASMRRGVPSANARWDNSVAILAGDILLAHASGLMSQLG----T----DTVAHFAETF--GELVTGQMRET 180 (360)
T ss_dssp HHHHH--HC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHC----H----HHHHHHHHHH--HHHHHHHHHHH
T ss_pred HhCCC--cCCCCCCCCCCcHHhhcChHHHHHHHHHHHHHHHHHHHHCC----H----HHHHHHHHHH--HHHHHHHHHHH
Confidence 99999 99999999999999999999999999999999999998752 2 4556666666 479999998
Q ss_pred ----ccCChhHHHHHHHhcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhh
Q 038854 224 ----KDLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDL 299 (353)
Q Consensus 224 ----~~~~~~~~~~i~~~KTg~L~~~~~~lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl 299 (353)
...++++|..|+++|||+||++||++|++++|++++.++.+++||.+||+||||+||++|++++++.+||+.|+|+
T Consensus 181 ~~~~~~~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl 260 (360)
T 3lmd_A 181 VGPRDTDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSETHESGKTPGTDL 260 (360)
T ss_dssp HCCTTSCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHH
T ss_pred hccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhhCCCchhHH
Confidence 2367889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHh-------------------------------------HHHHHHHHHHHHHHHHHHHhcCCCCCh-HHH
Q 038854 300 VADKLTYPKLLG-------------------------------------IEESKKLADKLNKDAQQQLSEFDQEKA-VPL 341 (353)
Q Consensus 300 ~~gk~T~p~l~~-------------------------------------le~a~~~~~~~~~~A~~~L~~~~~~~~-~~L 341 (353)
++||+|||++++ ++++++.++++.++|++.|+.||++.. +.|
T Consensus 261 ~egK~Tlp~l~al~~~~~~~~~L~~~l~~~~~~~~~~~~~~~ll~~~gal~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L 340 (360)
T 3lmd_A 261 REGVFTLPVLYALREDTPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANAELDRLPDSTVKEAL 340 (360)
T ss_dssp HHTCCCHHHHHHHHCCSHHHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHTTSCCSHHHHHH
T ss_pred hcCCchHHHHHHHHcCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 999999999984 678899999999999999999998766 899
Q ss_pred HHHHHHHHhccC
Q 038854 342 IALANYIAYRQN 353 (353)
Q Consensus 342 ~~l~~~i~~R~~ 353 (353)
.+|++|+++|.+
T Consensus 341 ~~La~~~~~R~~ 352 (360)
T 3lmd_A 341 RNLATFTVKRVG 352 (360)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHhcc
Confidence 999999999964
No 21
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.5e-63 Score=478.51 Aligned_cols=274 Identities=29% Similarity=0.403 Sum_probs=226.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCCccccccHHHHHHHHHHHHHH
Q 038854 67 FDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLI 146 (353)
Q Consensus 67 ~~~~~~l~~~~~~v~~~l~~~~~~~~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~lA~avEliH~asLI 146 (353)
-++...+++++..|++.|++.++.. |+.+.++++|.+..||||+||+||+++++++|++.+.++++|++|||||+||||
T Consensus 7 ~~~~~~i~~~l~~v~~~l~~~~~~~-~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~A~aiEliH~asLi 85 (334)
T 3rmg_A 7 SLIKTPIEAELEDFKALFDTPLSDS-NALLDSVITHIRKRNGKMMRPILVLLVARLYGAVTPATLHAAVSLELLHTASLV 85 (334)
T ss_dssp HHHHGGGHHHHHHHHHHTC----CC-CHHHHHHHHHTCC----CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-cHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence 3567778899999999999999876 458999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhccc---
Q 038854 147 HDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQAE--- 223 (353)
Q Consensus 147 HDDI~~iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~l~~GQ~~--- 223 (353)
|||| ||+|++|||+||+|.+||+++|||+||||++.||+.+++.. . .+++..+++++ .+++.||++
T Consensus 86 HDDI--~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~----~---~~~~~~~~~~~--~~~~~GQ~ldl~ 154 (334)
T 3rmg_A 86 HDDV--VDESTERRGQLSVNAIFNNKVSVLAGDYLLATSLVHAEQTN----N---YEIIRLVSSLG--QKLAEGELLQLS 154 (334)
T ss_dssp HHHH--HC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----C---HHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HcCc--cCCCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCC----c---HHHHHHHHHHH--HHHHHHHHHHHH
Confidence 9999 99999999999999999999999999999999999998641 1 24455556655 479999998
Q ss_pred ----ccCChhHHHHHHHhcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhh
Q 038854 224 ----KDLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDL 299 (353)
Q Consensus 224 ----~~~~~~~~~~i~~~KTg~L~~~~~~lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl 299 (353)
.++++++|..|+++|||+||++||++|++++|++++.++.+++||.++|+||||+||++|++ +++.+||++|+|+
T Consensus 155 ~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~-~~~~~GK~~g~Dl 233 (334)
T 3rmg_A 155 NVSNHSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYF-DSKKIGKPTGNDM 233 (334)
T ss_dssp CCCC--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CC------CCHHH
T ss_pred hCCCCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC-ChhhcCCCchhhh
Confidence 24689999999999999999999999999999999999999999999999999999999999 6889999999999
Q ss_pred hcCCCcHHHHH--------------------------------------hHHHHHHHHHHHHHHHHHHHhcCCCCCh-HH
Q 038854 300 VADKLTYPKLL--------------------------------------GIEESKKLADKLNKDAQQQLSEFDQEKA-VP 340 (353)
Q Consensus 300 ~~gk~T~p~l~--------------------------------------~le~a~~~~~~~~~~A~~~L~~~~~~~~-~~ 340 (353)
++||+|||+++ +++++++.++++.++|++.|+.||+++. +.
T Consensus 234 ~egK~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~v~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~lp~~~~~~~ 313 (334)
T 3rmg_A 234 LEGKLTLPALYALNTTKDAWAEQIAFKVKEGTATPDEIVRLIEFTKDNGGIEYACRTIEQYKKKAFDLLAALPDSNICLA 313 (334)
T ss_dssp HTTCCCHHHHHHHHHHCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred hcCchHHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999997 4667789999999999999999997776 89
Q ss_pred HHHHHHHHHhccC
Q 038854 341 LIALANYIAYRQN 353 (353)
Q Consensus 341 L~~l~~~i~~R~~ 353 (353)
|.+|++|+++|.+
T Consensus 314 L~~l~~~~~~R~~ 326 (334)
T 3rmg_A 314 LRTYLDYVVAREK 326 (334)
T ss_dssp HHHHHHHHHHCC-
T ss_pred HHHHHHHHHhccc
Confidence 9999999999974
No 22
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=100.00 E-value=2.6e-62 Score=479.30 Aligned_cols=275 Identities=28% Similarity=0.409 Sum_probs=244.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCCccccccHHHHHHHHHHHHHH
Q 038854 67 FDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLI 146 (353)
Q Consensus 67 ~~~~~~l~~~~~~v~~~l~~~~~~~~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~lA~avEliH~asLI 146 (353)
-.|..++++....|++.|++.+....|+.+.++++|.+..||||+||+||+++++++|++.+.++++|++|||||++|||
T Consensus 4 ~~~~~~~~~~~~~v~~~l~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~asLi 83 (358)
T 4dhd_A 4 DVVSRLHQKYGAEVEKALVRYLSIGLAEDFREAVLYQVKTGGKRLRPLLTLAAAEAVSGQWRPALPAAAIVELIHNYSLI 83 (358)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHGGGSSCCCCHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46788999899999999999998765678999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhccc---
Q 038854 147 HDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQAE--- 223 (353)
Q Consensus 147 HDDI~~iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~l~~GQ~~--- 223 (353)
|||| ||+|++|||+||+|++||+++|||+||+|++.||+.+... + ...+++..+++++ .+++.||++
T Consensus 84 HDDI--~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~--~----~~~~~~~~~~~~~--~~~~~GQ~ldl~ 153 (358)
T 4dhd_A 84 YDDI--IDRGDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAVLDT--P----KPTLFAKEVAEVI--KAIDEGERLDIL 153 (358)
T ss_dssp HHHH--HTTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTS--S----SHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HCcc--ccCCCCcCCCccHHHhcCHHHHHHHHHHHHHHHHHHHhCC--c----cHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 9999 9999999999999999999999999999999999999632 1 2345667777776 479999987
Q ss_pred -c---------------cCChhHHHHHHHhcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccc
Q 038854 224 -K---------------DLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKS 287 (353)
Q Consensus 224 -~---------------~~~~~~~~~i~~~KTg~L~~~~~~lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~ 287 (353)
. ++++++|..|+++|||+||++||++|++++|++++.++.+++||.++|+||||+||++|++++
T Consensus 154 ~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~gd 233 (358)
T 4dhd_A 154 FEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDIYGD 233 (358)
T ss_dssp TBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 2 457899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCcchhhhcCCC-cHHHHHhHHH--------------------------------------HHHHHHHHHHHHHH
Q 038854 288 SKELGKTAGKDLVADKL-TYPKLLGIEE--------------------------------------SKKLADKLNKDAQQ 328 (353)
Q Consensus 288 ~~~~GK~~g~Dl~~gk~-T~p~l~~le~--------------------------------------a~~~~~~~~~~A~~ 328 (353)
++.+||++|+||++||+ |||++++++. +++.++++.++|++
T Consensus 234 ~~~~GK~~g~Dl~egK~~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~i~~li~~~gai~~a~~~a~~~~~~A~~ 313 (358)
T 4dhd_A 234 PKKFGKEIGKDIKEHKRGNAVVAVALSHLGEGERRRLLEILAREVVEEADVREAVALLDSVGAREEALRLAARYREEAER 313 (358)
T ss_dssp ------CTTHHHHTTBSCSHHHHHHHHHSCHHHHHHHHHHHHCSSCCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCchhhHhcCChhhHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 9999986553 78899999999999
Q ss_pred HHhcCCCCChHHHHHHHHHHHhccC
Q 038854 329 QLSEFDQEKAVPLIALANYIAYRQN 353 (353)
Q Consensus 329 ~L~~~~~~~~~~L~~l~~~i~~R~~ 353 (353)
.|+.||++. .|.+|++|+++|++
T Consensus 314 ~L~~lp~~~--~L~~la~~~~~R~~ 336 (358)
T 4dhd_A 314 HLAKIPNNG--TLKELLDFIVAREY 336 (358)
T ss_dssp HHTTSSSCH--HHHHHHHHHTTTTT
T ss_pred HHHcCCCCH--HHHHHHHHHHhccc
Confidence 999998543 99999999999974
No 23
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=100.00 E-value=7.8e-62 Score=470.85 Aligned_cols=275 Identities=28% Similarity=0.436 Sum_probs=249.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCCccccccHHHHHHHHHHHHHH
Q 038854 67 FDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLI 146 (353)
Q Consensus 67 ~~~~~~l~~~~~~v~~~l~~~~~~~~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~lA~avEliH~asLI 146 (353)
+++...+.+++..|++.|++.+...+ +.+.++++|.+..||||+||.+|+++++++|++.+.++++|+++|+||+||||
T Consensus 4 l~~~~~~~~~~~~v~~~l~~~~~~~~-~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~g~~~~~~~~~A~avEliH~asLi 82 (325)
T 3aqb_B 4 LSYKAFLNPYIIEVEKRLYECIQSDS-ETINKAAHHILSSGGKRVRPMFVLLSGFLNDTQKDDLIRTAVSLELVHMASLV 82 (325)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHCCSS-HHHHHHHHHHHHSCCCCHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccc-hHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence 57788899999999999999997764 57999999999999999999999999999998888889999999999999999
Q ss_pred HhCCCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhccc---
Q 038854 147 HDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQAE--- 223 (353)
Q Consensus 147 HDDI~~iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~l~~GQ~~--- 223 (353)
|||| ||+|++|||+||+|.+||+++|||+||||++.||+.+++. .. .+++..+++++ .+++.||++
T Consensus 83 HDDi--~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~----~~---~~~~~~~~~~~--~~~~~GQ~~dl~ 151 (325)
T 3aqb_B 83 HDDY--IDNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATI----NN---SKFHQIFSKTI--LEVCFGEFDQMA 151 (325)
T ss_dssp HHHH--HHTCCEETTEECHHHHTCHHHHHHHHHHHHHHHHHHTTTC----CC---HHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred hCcc--ccCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhC----Ch---HHHHHHHHHHH--HHHHHHHHHHHH
Confidence 9999 9999999999999999999999999999999999999864 11 34556666665 479999998
Q ss_pred ----ccCChhHHHHHHHhcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhh
Q 038854 224 ----KDLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDL 299 (353)
Q Consensus 224 ----~~~~~~~~~~i~~~KTg~L~~~~~~lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl 299 (353)
...++++|..|+.+|||+||++||++|++++|++++..+.+++||.++|++|||+||++|++++++.+||+.|+|+
T Consensus 152 ~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl 231 (325)
T 3aqb_B 152 DRFNYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDI 231 (325)
T ss_dssp TTTCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHH
T ss_pred cccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCccchHh
Confidence 2578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHhHHHH---------------------------------------HHHHHHHHHHHHHHHhcCCCCCh-H
Q 038854 300 VADKLTYPKLLGIEES---------------------------------------KKLADKLNKDAQQQLSEFDQEKA-V 339 (353)
Q Consensus 300 ~~gk~T~p~l~~le~a---------------------------------------~~~~~~~~~~A~~~L~~~~~~~~-~ 339 (353)
++||+|||++++++.+ ++.++++.++|++.|+.+|.+.. +
T Consensus 232 ~~gk~T~p~i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~ 311 (325)
T 3aqb_B 232 RNGHITYPLMAAIANLKEQDDDKLEAVVKHLTSTSDDEVYQYIVSQVKQYGIEPAELLSRKYGDKAKYHLSQLQDSNIKD 311 (325)
T ss_dssp HTTCCCHHHHHHHHHHHHTTCCHHHHHHHTCCTTCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTSCCCHHHH
T ss_pred hCCCccHHHHHHHHhCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence 9999999999876543 46677889999999999987766 7
Q ss_pred HHHHHHHHHHhccC
Q 038854 340 PLIALANYIAYRQN 353 (353)
Q Consensus 340 ~L~~l~~~i~~R~~ 353 (353)
.|.++++++.+|.+
T Consensus 312 ~L~~l~~~~~~R~~ 325 (325)
T 3aqb_B 312 YLEEIHEKMLKRVY 325 (325)
T ss_dssp HHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHhCcC
Confidence 89999999999974
No 24
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=100.00 E-value=1.9e-62 Score=476.32 Aligned_cols=275 Identities=25% Similarity=0.385 Sum_probs=247.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHhHhCCCcchHHHHHHHHHHHhCC--CccccccHHHHHHHHHHHH
Q 038854 67 FDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGG--HESMAMPAACSIEMIHTMS 144 (353)
Q Consensus 67 ~~~~~~l~~~~~~v~~~l~~~~~~~~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~--~~~~~~~lA~avEliH~as 144 (353)
.+.+..+++++..|++.|++.+....| .+.++++|.+..||||+||.||+++++ +|+ +.+.+.++|++|||||++|
T Consensus 15 ~~~~~~i~~~l~~v~~~l~~~~~~~~~-~l~~~~~~~~~~gGKrlRp~l~l~~~~-~g~~~~~~~~~~~A~aiEliH~as 92 (334)
T 3pko_A 15 WRQFPQVEPQLTALQDYLLRTVQLDNQ-PIHHKILALLKSGGKLLRPGYFYLFST-FGNAATPAQLQAGAAAIEILHVGT 92 (334)
T ss_dssp GGGCTTTHHHHHHHHHHHHHHCCCSCH-HHHHHHHHHHHHCCCCHHHHHHHHHHT-TCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHhccCCh-HHHHHHHHHHhCCCCcHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHH
Confidence 345556778899999999999987765 799999999999999999999999999 665 6778899999999999999
Q ss_pred HHHhCCCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhccc-
Q 038854 145 LIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQAE- 223 (353)
Q Consensus 145 LIHDDI~~iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~l~~GQ~~- 223 (353)
|||||| ||+|++|||+||+|++||+++|||+||||++.||+.+++... ++ +++..+++++ .+++.||+.
T Consensus 93 LiHDDi--~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~--~~----~~~~~~~~~~--~~~~~Gq~~d 162 (334)
T 3pko_A 93 LIHDDV--IDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTT--DR----SLIQNHIDAM--HRILQGELHQ 162 (334)
T ss_dssp HHHHHH--HHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC--CH----HHHHHHHHHH--HHHHHHHHHH
T ss_pred HHhCcc--CCCCCCcCCCccHHHHcCchHHHHHHHHHHHHHHHHHHhcCC--CH----HHHHHHHHHH--HHHHHHHHHH
Confidence 999999 999999999999999999999999999999999999987532 12 3445556655 478999987
Q ss_pred ------ccCChhHHHHHHHhcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcch
Q 038854 224 ------KDLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGK 297 (353)
Q Consensus 224 ------~~~~~~~~~~i~~~KTg~L~~~~~~lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~ 297 (353)
.++++++|..|+++|||+||++||++|++++|++++.++.+++||.++|+||||+||++|++++++.+||++|+
T Consensus 163 l~~~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~ 242 (334)
T 3pko_A 163 MDLNYREDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLE 242 (334)
T ss_dssp HHTTTCTTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTSCCHHHHH
T ss_pred HHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCC
Confidence 25678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcHHHHHhH-----------------------------------HHHHHHHHHHHHHHHHHHhcCCCCCh-HHH
Q 038854 298 DLVADKLTYPKLLGI-----------------------------------EESKKLADKLNKDAQQQLSEFDQEKA-VPL 341 (353)
Q Consensus 298 Dl~~gk~T~p~l~~l-----------------------------------e~a~~~~~~~~~~A~~~L~~~~~~~~-~~L 341 (353)
|+++||+|||+++++ +++++.++++.++|++.|+.+|.+.. +.|
T Consensus 243 Dl~egK~Tlp~i~al~~~~~~l~~~l~~~~~~~~~~~~~i~~li~~~ga~~~a~~~~~~~~~~A~~~L~~lp~~~~~~~L 322 (334)
T 3pko_A 243 DLRSGVYSLPLLLSLSHAPRDFHKLLKKKQAMTLEDIKHVQALVAQYDGVGAAKQLAQDYTDRALTLIQQLPVGSAQQSL 322 (334)
T ss_dssp HHHTTCCCHHHHHHGGGSHHHHHHHHTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCSSHHHHHH
T ss_pred ccccCchhHHHHHHHHhCcHHHHHHHhcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 999999999999866 47889999999999999999998666 899
Q ss_pred HHHHHHHHhccC
Q 038854 342 IALANYIAYRQN 353 (353)
Q Consensus 342 ~~l~~~i~~R~~ 353 (353)
.+|++|+.+|++
T Consensus 323 ~~l~~~~~~R~~ 334 (334)
T 3pko_A 323 EQLTRLLLRRDH 334 (334)
T ss_dssp HHHHHHHTTCC-
T ss_pred HHHHHHHHhccC
Confidence 999999999975
No 25
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=100.00 E-value=1.9e-61 Score=472.00 Aligned_cols=276 Identities=31% Similarity=0.475 Sum_probs=248.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHhH-----------hCCCcchHHHHHHHHHHHhCCCccccccHHHH
Q 038854 68 DFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSL-----------LAGGKRVRPVLCLAACDLVGGHESMAMPAACS 136 (353)
Q Consensus 68 ~~~~~l~~~~~~v~~~l~~~~~~~~p~~l~~~~~y~~-----------~~gGKr~Rp~L~ll~~~~~g~~~~~~~~lA~a 136 (353)
++..++.+....|+.+|++.+...+| .+.++++|.+ ..||||+||+||+++++++|++.+.++++|++
T Consensus 4 ~~~~~l~~~~~~v~~~l~~~v~~~~~-~l~~~~~y~~~~~~~~~~~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~~A~a 82 (352)
T 3nf2_A 4 DVTALLERGRTLATPVLRAAVDRLAP-PMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAAPEVGVPGAVA 82 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTSCT-THHHHHHHHTTSBCTTSCBCCCCCCCCHHHHHHHHHHHTTTCCGGGGHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHcccCh-HHHHHHHHHhcccccccccCcCCCcccHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 46789999999999999999998765 6999999988 67999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhhh
Q 038854 137 IEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADG 216 (353)
Q Consensus 137 vEliH~asLIHDDI~~iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~ 216 (353)
|||||++||||||| ||+|++|||+||+|.+||+++|||+||||++.||+.+++.. .+ ...+++..+++++ .+
T Consensus 83 vEliH~asLiHDDI--~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~---~~-~~~~~~~~~~~~~--~~ 154 (352)
T 3nf2_A 83 VELVHNFSLLHDDL--MDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELG---TV-EAGRATRRLTKAS--RS 154 (352)
T ss_dssp HHHHHHHHHHHHHH--HHTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTC---SH-HHHHHHHHHHHHH--HH
T ss_pred HHHHHHHHHHHcCC--CCCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCC---Cc-hHHHHHHHHHHHH--HH
Confidence 99999999999999 99999999999999999999999999999999999999752 12 2346667777776 47
Q ss_pred hhhhccc-------ccCChhHHHHHHHhcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchh
Q 038854 217 LVAGQAE-------KDLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSK 289 (353)
Q Consensus 217 l~~GQ~~-------~~~~~~~~~~i~~~KTg~L~~~~~~lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~ 289 (353)
++.||++ .++++++|..|+++|||+||++||++|++++|++++.++.++.||+++|+||||+||++|++++++
T Consensus 155 l~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~gd~~ 234 (352)
T 3nf2_A 155 LIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPD 234 (352)
T ss_dssp HHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHcccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChh
Confidence 9999998 257899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCcchhhhcCCCcHHHHHhH--------------------------------------------HHHHHHHHHHHHH
Q 038854 290 ELGKTAGKDLVADKLTYPKLLGI--------------------------------------------EESKKLADKLNKD 325 (353)
Q Consensus 290 ~~GK~~g~Dl~~gk~T~p~l~~l--------------------------------------------e~a~~~~~~~~~~ 325 (353)
.+||+.|+||++||+|||+++++ +++++.++++.++
T Consensus 235 ~~GK~~g~Dl~egK~Tlpvi~al~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~li~~~g~~~~a~~~a~~~~~~ 314 (352)
T 3nf2_A 235 ATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQHTI 314 (352)
T ss_dssp HHSSCTTHHHHTTCCCHHHHHHHHHCSHHHHHHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hhCCCcCcccccCCccHHHHHHHHhCChHHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHH
Confidence 99999999999999999998743 3355677789999
Q ss_pred HHHHHhcCCC-CCh-HHHHHHHHHHHhcc
Q 038854 326 AQQQLSEFDQ-EKA-VPLIALANYIAYRQ 352 (353)
Q Consensus 326 A~~~L~~~~~-~~~-~~L~~l~~~i~~R~ 352 (353)
|++.|+.+|+ +.+ +.|.+|++|+++|.
T Consensus 315 A~~~L~~lp~~~~~r~~L~~la~~~~~R~ 343 (352)
T 3nf2_A 315 AIEALDAVDMPDRVRDRFTALADFVVVRK 343 (352)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHhcc
Confidence 9999999986 444 89999999999985
No 26
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=100.00 E-value=2.9e-61 Score=460.31 Aligned_cols=257 Identities=26% Similarity=0.436 Sum_probs=226.6
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCCccccccHHHHHHHHHHHHHHHhCCCCCCCCC
Q 038854 78 STVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDP 157 (353)
Q Consensus 78 ~~v~~~l~~~~~~~~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~lA~avEliH~asLIHDDI~~iD~s~ 157 (353)
..|++.|++.++...|+.+.++++|.+..||||+||.||+++++++|++.+.+.++|++|||||+|||||||| ||+|+
T Consensus 12 ~~i~~~l~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLIHDDi--~D~s~ 89 (295)
T 3ipi_A 12 RYVEAGIKESITLIEDPGLKKMVEHVCHSGGKRIRPIILLLVSEICSGSYSRSLNAALAVEMMHSASLIHDDL--LDQGL 89 (295)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHHHH--HHHHT
T ss_pred HHHHHHHHHHhhhcCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCcC--cCCCC
Confidence 6799999998876656789999999999999999999999999999999999999999999999999999999 99999
Q ss_pred CCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhccc------ccCChhHH
Q 038854 158 LRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQAE------KDLGIEHL 231 (353)
Q Consensus 158 ~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~l~~GQ~~------~~~~~~~~ 231 (353)
+|||+||+|++||+++|||+||||++.||+.+++. ++ +++..+++++ .+++.||++ ..+++++|
T Consensus 90 ~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~ll~~~----~~----~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~t~~~y 159 (295)
T 3ipi_A 90 VRRNLPSAPEKFGPSGALLCGDYLIAKSIAFISPY----GE----KVIQDFGKAG--MDMAEGEVLDLKLEDESFGENDY 159 (295)
T ss_dssp SCTTSCCCCCSSCHHHHHHHHHHHHHHHHHHHGGG----CH----HHHHHHHHHH--HHHHHHHHHHHC-------CHHH
T ss_pred CCCCCccHHHhcCccHHHHHHHHHHHHHHHHHHHc----hH----HHHHHHHHHH--HHHHccchHHHHccCCCCCHHHH
Confidence 99999999999999999999999999999999864 11 3455566665 468999988 24678899
Q ss_pred HHHHHhcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCcHHHHHh
Q 038854 232 EFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLG 311 (353)
Q Consensus 232 ~~i~~~KTg~L~~~~~~lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T~p~l~~ 311 (353)
..|+++|||+||++||++|++++|++++.++.+++||+++|+||||+||++|++++++ |+|+.+||+|||++++
T Consensus 160 ~~~i~~KTg~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~------gkd~~~gk~Tlp~l~a 233 (295)
T 3ipi_A 160 FKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVVE------GKESKFTSETLPHIYM 233 (295)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------C-------CCHHHHHT
T ss_pred HHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc------CCCcccCcccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998764 4678899999999998
Q ss_pred --------HHHHHHHHHHHHHHHHHHHhcCCCCCh-HHHHHHHHHHHhcc
Q 038854 312 --------IEESKKLADKLNKDAQQQLSEFDQEKA-VPLIALANYIAYRQ 352 (353)
Q Consensus 312 --------le~a~~~~~~~~~~A~~~L~~~~~~~~-~~L~~l~~~i~~R~ 352 (353)
+++|++.++++.++|++.|+.||++.. +.|.+|++|++.|.
T Consensus 234 l~~~~~~~le~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~~~ 283 (295)
T 3ipi_A 234 KSTSKEEALKKSIDCVKLHVAAAKETLETFRECPARDKLFQITDYITVDM 283 (295)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCSHHHHHHHHHHHHTTGGG
T ss_pred HhcCchhHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhC
Confidence 999999999999999999999987766 89999999999874
No 27
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=100.00 E-value=2e-61 Score=472.02 Aligned_cols=273 Identities=29% Similarity=0.381 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHhHhCC--CcchHHHHHHHHHHHhCCCc-----------------cc
Q 038854 69 FKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAG--GKRVRPVLCLAACDLVGGHE-----------------SM 129 (353)
Q Consensus 69 ~~~~l~~~~~~v~~~l~~~~~~~~p~~l~~~~~y~~~~g--GKr~Rp~L~ll~~~~~g~~~-----------------~~ 129 (353)
+...+.+++..|++.|++.+....| .+.++++|.+..| |||+||.||+++++++|++. +.
T Consensus 10 ~~~~i~~~l~~v~~~l~~~~~~~~~-~l~~~~~y~~~~g~~GKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (348)
T 3apz_A 10 PFSLVADELSLLSNKLREMVLAEVP-KLASAAEYFFKRGVQGKQFRSTILLLMATALDVRVPEALIGESTDIVTSELRVR 88 (348)
T ss_dssp TTTTTHHHHHHHHHGGGGCCCCCCC-------------CCHHHHHHHHHHHHHHTTSCC--------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCh-hHHHHHHHHHhCCCCCccHHHHHHHHHHHHcCCCCccccccccccccccchhHH
Confidence 3345677888999999998887765 6999999999877 99999999999999998642 13
Q ss_pred cccHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Q 038854 130 AMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELA 209 (353)
Q Consensus 130 ~~~lA~avEliH~asLIHDDI~~iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~l~ 209 (353)
++++|++|||||+|||||||| ||+|++|||+||+|.+||+++|||+||||++.||+.+++.. . .+++..++
T Consensus 89 ~~~~A~avEliH~asLiHDDi--~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~----~---~~~~~~~~ 159 (348)
T 3apz_A 89 QRGIAEITEMIHVASLLHDDV--LDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALK----N---TEVVALLA 159 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------------------CCHHHHHHHHHHHHHHHHHHHHHTT----C---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccc--cCCCCCCCCCCcHHHHhCchHHHHHHHHHHHHHHHHHHhCC----C---HHHHHHHH
Confidence 578999999999999999999 99999999999999999999999999999999999998641 1 34555566
Q ss_pred HHHhhhhhhhhccc-------ccCChhHHHHHHHhcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 038854 210 KYIGADGLVAGQAE-------KDLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDIL 282 (353)
Q Consensus 210 ~~i~~~~l~~GQ~~-------~~~~~~~~~~i~~~KTg~L~~~~~~lga~lag~~~~~~~~l~~~g~~lG~afQI~DDil 282 (353)
+++ .+++.||++ ...++++|..|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++
T Consensus 160 ~~~--~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~l 237 (348)
T 3apz_A 160 TAV--EHLVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDIL 237 (348)
T ss_dssp HHH--HHHHHHHHHHHTCCHHHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 665 579999998 24688999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchhhhCCCcchhhhcCCCcHHHHH---------------------------------hHHHHHHHHHHHHHHHHHH
Q 038854 283 DLTKSSKELGKTAGKDLVADKLTYPKLL---------------------------------GIEESKKLADKLNKDAQQQ 329 (353)
Q Consensus 283 d~~~~~~~~GK~~g~Dl~~gk~T~p~l~---------------------------------~le~a~~~~~~~~~~A~~~ 329 (353)
|++++++.+||+.|+|+++||+|||+++ +++++++.++++.++|++.
T Consensus 238 D~~gd~~~~GK~~g~Dl~egK~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~g~l~~a~~~~~~~~~~A~~~ 317 (348)
T 3apz_A 238 DFTGTSASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAMEHANLAAAA 317 (348)
T ss_dssp HHHTTTTCTTCSCCHHHHTTCCCHHHHHHHHHCTTHHHHHHTTTTCTHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred hccCChhhcCCcchhhHhCCChhHHHHHHHHcCHHHHHHHHhccCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 6789999999999999999
Q ss_pred HhcCCCCC------h-HHHHHHHHHHHhccC
Q 038854 330 LSEFDQEK------A-VPLIALANYIAYRQN 353 (353)
Q Consensus 330 L~~~~~~~------~-~~L~~l~~~i~~R~~ 353 (353)
|+.||.+. . +.|.+|++|+.+|.+
T Consensus 318 L~~l~~~~~~~~~~~~~~L~~l~~~~~~R~~ 348 (348)
T 3apz_A 318 IGSLPETDNEDVKRSRRALIDLTHRVITRNK 348 (348)
T ss_dssp HTTSCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHcCCCCcccccHHHHHHHHHHHHHHHhCcC
Confidence 99998765 4 789999999999975
No 28
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=100.00 E-value=3.1e-59 Score=453.55 Aligned_cols=268 Identities=26% Similarity=0.297 Sum_probs=235.4
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCCccccccHHHHHHHHHHHHHHHhCCCCCC
Q 038854 75 QKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMD 154 (353)
Q Consensus 75 ~~~~~v~~~l~~~~~~~~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~lA~avEliH~asLIHDDI~~iD 154 (353)
+....|++.|.+.+... |+.+.++++|++..||||+||.||+++++++|++.+.++++|++|||||++||||||| ||
T Consensus 7 ~~~~~v~~~l~~~~~~~-~~~l~~~~~~~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLihDDi--~D 83 (330)
T 1wmw_A 7 AIRQALQERLLARLDHP-DPLYRDLLQDYPRRGGKMLRGLLTVYSALAHGAPLEAGLEAATALELFQNWVLVHDDI--ED 83 (330)
T ss_dssp HHHHHHHHHHHHHTCCS-SHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH--HH
T ss_pred HHHHHHHHHHHHHhccc-cHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHccc--cc
Confidence 34456888899888664 5579999999999999999999999999999998888899999999999999999999 99
Q ss_pred CCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhccC-CCChHHHHHHHHHHHHHHhhhhhhhhccc---c------
Q 038854 155 NDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTK-GVSPARIVRAIAELAKYIGADGLVAGQAE---K------ 224 (353)
Q Consensus 155 ~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~~-~~~~~~~~~~~~~l~~~i~~~~l~~GQ~~---~------ 224 (353)
+|++|||+||+|.+||+++|||+||+|++.||+.+++... +.++. +++..+++++ .+++.||++ .
T Consensus 84 ~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~---~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~ 158 (330)
T 1wmw_A 84 GSEERRGRPALHRLHPMPLALNAGDAMHAEMWGLLAEGLARGLFPP---EVLLEFHEVV--RRTAYGQHLDLLWTLGGTF 158 (330)
T ss_dssp TCCEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTSSCH---HHHHHHHHHH--HHHHHHHHHHHHHHHSSSC
T ss_pred CCCCCCCCCccccccCchHHHHHHHHHHHHHHHHHHhcccccccHH---HHHHHHHHHH--HHHHHHHHHHHHhcccCCC
Confidence 9999999999999999999999999999999999987531 23322 4555566665 578999987 2
Q ss_pred cCChhHHHHHHHhcHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCC
Q 038854 225 DLGIEHLEFIHEHKTAAL-LEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADK 303 (353)
Q Consensus 225 ~~~~~~~~~i~~~KTg~L-~~~~~~lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk 303 (353)
++++++|..|+.+|||+| |++||++|++++|++++.. +++||.++|++|||+||++|++++++ +||+.|+|+++||
T Consensus 159 ~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~~~--l~~~g~~lG~aFQi~DD~ld~~~d~~-~GK~~g~Dl~egK 235 (330)
T 1wmw_A 159 DLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPPAA--YEEGGLRLGTAFQIVDDVLNLEGGEA-YGKERAGDLYEGK 235 (330)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCHH--HHHHHHHHHHHHHHHHHHHHHSCSCC-CSSSTTHHHHHTC
T ss_pred CCCHHHHHHHHHccccHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHccCcccCCcc-cCCCcCchhhCCC
Confidence 457899999999999999 9999999999999987766 99999999999999999999999999 9999999999999
Q ss_pred CcHHHHHhH----------------------------------------HHHHHHHHHHHHHHHHHHh----cCCCCCh-
Q 038854 304 LTYPKLLGI----------------------------------------EESKKLADKLNKDAQQQLS----EFDQEKA- 338 (353)
Q Consensus 304 ~T~p~l~~l----------------------------------------e~a~~~~~~~~~~A~~~L~----~~~~~~~- 338 (353)
+|||+++++ +++++.++++.++|++.|+ .+|.+..
T Consensus 236 ~T~p~i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~~i~~lp~~~~~ 315 (330)
T 1wmw_A 236 RTLILLRFLEEAPPEERARALALLALPREAKPEAEVGWLLERLLASRALAWAKAEAKRLQAEGLALLEAAFQDLPGKEAL 315 (330)
T ss_dssp CCHHHHHHHHHSCHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTGGGGCSCHHHH
T ss_pred CCHHHHHHHHhCCHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHH
Confidence 999999854 3445678899999999999 9987555
Q ss_pred HHHHHHHHHHHhccC
Q 038854 339 VPLIALANYIAYRQN 353 (353)
Q Consensus 339 ~~L~~l~~~i~~R~~ 353 (353)
+.|.++++++.+|.+
T Consensus 316 ~~L~~l~~~~~~R~~ 330 (330)
T 1wmw_A 316 DHLRGLLAALVERRA 330 (330)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhccC
Confidence 789999999999974
No 29
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=100.00 E-value=1.4e-58 Score=440.77 Aligned_cols=266 Identities=19% Similarity=0.280 Sum_probs=240.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCCccccccHHHHHHHHHHHHH
Q 038854 66 TFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSL 145 (353)
Q Consensus 66 ~~~~~~~l~~~~~~v~~~l~~~~~~~~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~lA~avEliH~asL 145 (353)
.|+...++.+....|++.|++.+....|+.+.++++|.+. ||||+||.||+++++++|++++.++++|+++|+||++||
T Consensus 8 ~~~~~~~~~~~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~-gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asL 86 (289)
T 2azj_A 8 HMSIIEFWLEAKATIDRLIEQFLNSNRDWDLVDISSYILK-DGKRFRGTLNMFFTVALGGDIKDSYGGALAIEILHSASL 86 (289)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHCSCTTHHHHHHHHHS-CCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHhc-CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999998864335579999999998 999999999999999999988889999999999999999
Q ss_pred HHhCCCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHH-HhccCCCChHHHHHHHHHHHHHHhhhhhhhhcccc
Q 038854 146 IHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHI-AVCTKGVSPARIVRAIAELAKYIGADGLVAGQAEK 224 (353)
Q Consensus 146 IHDDI~~iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l-~~~~~~~~~~~~~~~~~~l~~~i~~~~l~~GQ~~~ 224 (353)
||||| ||+|++|||+||+|.+||+++|||+||+|++.||+.+ ++. ++ +++..+++++ .+++.||+++
T Consensus 87 IHDDi--~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~----~~----~~~~~~~~~~--~~~~~GQ~~d 154 (289)
T 2azj_A 87 ALCDI--VDLDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQTSY----GD----DALNTSIELW--KDTSVGALRD 154 (289)
T ss_dssp HHHHH--HTTCCBSSSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CH----HHHHHHHHHH--HHHHHHHHHT
T ss_pred HhCCC--CCCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcC----cH----HHHHHHHHHH--HHHHHHHHHH
Confidence 99999 9999999999999999999999999999999999999 865 12 3556666665 5799999985
Q ss_pred cCChhHHHHHHHhcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCC
Q 038854 225 DLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKL 304 (353)
Q Consensus 225 ~~~~~~~~~i~~~KTg~L~~~~~~lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~ 304 (353)
-...++|.+++++|||+||++||++|++++ ++++.++.+++||.++|+||||+||++|++++ ||+ |+++||.
T Consensus 155 l~~~~~y~~~i~~KTa~L~~~a~~~ga~la-~~~~~~~~l~~~g~~lG~aFQi~DDilD~~~~----~K~---dl~~gk~ 226 (289)
T 2azj_A 155 MYDNSDYIRTIELKTGSLFKLSTVLSAYAS-KHYNTKQQMLDVGKYLGIIYQVIDDFVDYKTK----KVE---EIDGSAK 226 (289)
T ss_dssp TTTTSCHHHHHHHHTHHHHHHHHHHHHHHT-TCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTS----CTT---TCCTTGG
T ss_pred HhhHHHHHHHHHcchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC----CCh---hhhcCcc
Confidence 445788999999999999999999999999 99899999999999999999999999999985 454 8999999
Q ss_pred cHHHHH---hHHHH-HHHHHHHHHHHHHHHhcCCC-CCh-HHHHHHHHHHHhcc
Q 038854 305 TYPKLL---GIEES-KKLADKLNKDAQQQLSEFDQ-EKA-VPLIALANYIAYRQ 352 (353)
Q Consensus 305 T~p~l~---~le~a-~~~~~~~~~~A~~~L~~~~~-~~~-~~L~~l~~~i~~R~ 352 (353)
|||+++ +.+.+ ++.++++.++|++.|+.||. +.. +.|.++++|+++|.
T Consensus 227 Tlp~l~~~~g~~~a~~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~l~~~~~~R~ 280 (289)
T 2azj_A 227 QLFKYYREGKLEEYVRSVYLEYKQKYDELISNIPFQSKYLSEIRSLPEFLANGL 280 (289)
T ss_dssp GGHHHHTTTCHHHHHHHHHHHHHHHHHHHHHTSCCCGGGHHHHHTHHHHHHHHH
T ss_pred cHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcc
Confidence 999999 88888 78999999999999999986 444 88999999999985
No 30
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=100.00 E-value=4.6e-58 Score=452.10 Aligned_cols=252 Identities=31% Similarity=0.453 Sum_probs=211.5
Q ss_pred hHHHHHHHhHhCCCcchHHHHHHHHHHHhCCC------ccccccHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCcccc
Q 038854 95 KIHESMRYSLLAGGKRVRPVLCLAACDLVGGH------ESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTI 168 (353)
Q Consensus 95 ~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~------~~~~~~lA~avEliH~asLIHDDI~~iD~s~~RRG~pt~h~~ 168 (353)
.+.+.++|++..||||+||+||+++++++|++ .+.++++|++|||||++||||||| ||+|++|||+||+|++
T Consensus 49 ~l~~~~~~~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~~~~~~~AaaiEliH~asLIHDDI--mD~s~~RRG~pt~h~~ 126 (380)
T 3lk5_A 49 DAVAHLRSFVLNGGKRIRPLYAWAGFLAAQGHKNSSEKLESVLDAAASLEFIQACALIHDDI--IDSSDTRRGAPTVHRA 126 (380)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHHHHHHHHHHHH--HTC-------------
T ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHHHHCCC--cCCCCCCCCCcchhHH
Confidence 47888999999999999999999999999874 567899999999999999999999 9999999999999997
Q ss_pred ----------------cChhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhccc-------cc
Q 038854 169 ----------------YGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQAE-------KD 225 (353)
Q Consensus 169 ----------------~G~~~Avl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~l~~GQ~~-------~~ 225 (353)
||+++|||+||+|++.||+.+++. +.+++...+++..++..+ .+++.||++ ..
T Consensus 127 f~~~~~~~~~~~~~~~~G~~~AIL~GD~Ll~~A~~~l~~~--~~~~~~~~~~~~~~~~~~--~~~~~GQ~lDl~~~~~~~ 202 (380)
T 3lk5_A 127 VEADHRANNFEGDPEHFGVSVSILAGDMALVWAEDMLQDS--GLSAEALARTRDAWRGMR--TEVIGGQLLDIYLESHAN 202 (380)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTTC
T ss_pred HHHhhhhcccccchhhcCHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHhccCCC
Confidence 599999999999999999999864 445555566666666543 478999998 24
Q ss_pred CChhHHHHHHHhcHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCC
Q 038854 226 LGIEHLEFIHEHKTAAL-LEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKL 304 (353)
Q Consensus 226 ~~~~~~~~i~~~KTg~L-~~~~~~lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~ 304 (353)
.++++|..|+++|||+| |++||++|++++|++++.++.+++||.+||+||||+||++|++++++.+||+.|+||++||+
T Consensus 203 ~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~~~~~~~l~~~G~~lG~AFQI~DDiLd~~gd~~~~GK~~g~Dl~egK~ 282 (380)
T 3lk5_A 203 ESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKR 282 (380)
T ss_dssp CCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCC
T ss_pred CCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCc
Confidence 68999999999999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHh----------------------------------------HHHHHHHHHHHHHHHHHHHhcCCCC-Ch-HHHH
Q 038854 305 TYPKLLG----------------------------------------IEESKKLADKLNKDAQQQLSEFDQE-KA-VPLI 342 (353)
Q Consensus 305 T~p~l~~----------------------------------------le~a~~~~~~~~~~A~~~L~~~~~~-~~-~~L~ 342 (353)
|||++++ ++++++.++++.++|++.|+.+|.+ .+ +.|.
T Consensus 283 T~p~i~al~~~~~~~~~~~~~L~~~l~~~~~~~~~~~v~~li~~~Ga~~~~~~~~~~~~~~A~~~L~~lp~~~~~r~~L~ 362 (380)
T 3lk5_A 283 TVLLALALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHIRATGAEEEVEQRISQLTESGLAHLDDVDIPDEVRAQLR 362 (380)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHHTTTCCSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHGGGSCCCHHHHHHHH
T ss_pred hHHHHHHHHhCccCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 9999874 4456677889999999999999853 44 8999
Q ss_pred HHHHHHHhcc
Q 038854 343 ALANYIAYRQ 352 (353)
Q Consensus 343 ~l~~~i~~R~ 352 (353)
+|++++..|.
T Consensus 363 ~La~~~~~~~ 372 (380)
T 3lk5_A 363 ALAIRSTERR 372 (380)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHhh
Confidence 9999999874
No 31
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=100.00 E-value=5.7e-58 Score=441.37 Aligned_cols=258 Identities=27% Similarity=0.314 Sum_probs=206.4
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCCc--cccccHHHHHHHHHHHHHHHhCCCC
Q 038854 75 QKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHE--SMAMPAACSIEMIHTMSLIHDDLPC 152 (353)
Q Consensus 75 ~~~~~v~~~l~~~~~~~~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~~--~~~~~lA~avEliH~asLIHDDI~~ 152 (353)
+.+..|++.|.+.+....++.+.+ .|.+..||||+||.||+++++..+... +.+.++|++|||||+||||||||
T Consensus 4 ~~~~~i~~~l~~~~~~~~~~~~~~--~y~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~A~aiEliH~asLiHDDi-- 79 (315)
T 3tc1_A 4 KQLKAIQNKIASWIKEIESGFIDE--LFSKIGPSKMLRSKLMLALLNEKTDAILLDKALNLCTIVEMIQTASLLHDDV-- 79 (315)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHH--HHTTCCCCCCHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHhhcCcHHHHH--HHHhcCCcccHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHcCC--
Confidence 445678888888876433333443 688889999999999999988432222 45569999999999999999999
Q ss_pred CCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhccc-------cc
Q 038854 153 MDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQAE-------KD 225 (353)
Q Consensus 153 iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~l~~GQ~~-------~~ 225 (353)
||+|++|||+||+|++||+++|||+||+|++.||+.+++.. .+++..+++++ .+++.||++ .+
T Consensus 80 ~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~--------~~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~ 149 (315)
T 3tc1_A 80 IDKATMRRKLPSINALFGNFNAVMLGDVFYSKAFFELSKMG--------ELIAQALSNAV--LRLSRGEIEDVFVGECFN 149 (315)
T ss_dssp C----------------CCSHHHHHHHHHHHHHHHHHTTSC--------HHHHHHHHHHH--HHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCcCCCccHHHHhCchHHHHHHHHHHHHHHHHHHHCc--------HHHHHHHHHHH--HHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999998652 24455566665 479999998 25
Q ss_pred CChhHHHHHHHhcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCc
Q 038854 226 LGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLT 305 (353)
Q Consensus 226 ~~~~~~~~i~~~KTg~L~~~~~~lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T 305 (353)
+++++|..|+++|||+||++||++|++++|++ .+.++.||.++|+||||+||++|++++++.+||++|+|+++||+|
T Consensus 150 ~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~---~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~T 226 (315)
T 3tc1_A 150 SDKQKYWRILEDKTAHFIEASLKSMAILLNKD---AKIYADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKTT 226 (315)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCTGGGTCCC
T ss_pred CCHHHHHHHHhcchHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHHhcccCCHHHhCCChhhHHHcCChh
Confidence 78999999999999999999999999999988 678999999999999999999999999999999999999999999
Q ss_pred HHHHH------------------------------------hHHHHHHHHHHHHHHHHHHHhcCCCCCh-HHHHHHHHHH
Q 038854 306 YPKLL------------------------------------GIEESKKLADKLNKDAQQQLSEFDQEKA-VPLIALANYI 348 (353)
Q Consensus 306 ~p~l~------------------------------------~le~a~~~~~~~~~~A~~~L~~~~~~~~-~~L~~l~~~i 348 (353)
||+++ +++++++.++++.++|++.|+.||+++. +.|.+|++|+
T Consensus 227 ~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~i~~li~~~ga~~~~~~~~~~~~~~A~~~L~~lp~s~~r~~L~~l~~~~ 306 (315)
T 3tc1_A 227 LPYLLLYEKLNQHDQGLLISYFKQDSHEIIEWTKEKFKQYGIIEETLKTAQVYSKKALEAIKGENNLILEKLAQDVISRT 306 (315)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHCC-
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 99987 4677889999999999999999998777 8899998876
Q ss_pred H
Q 038854 349 A 349 (353)
Q Consensus 349 ~ 349 (353)
.
T Consensus 307 ~ 307 (315)
T 3tc1_A 307 F 307 (315)
T ss_dssp -
T ss_pred H
Confidence 3
No 32
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=100.00 E-value=3.1e-58 Score=440.58 Aligned_cols=225 Identities=28% Similarity=0.375 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCchhHHHHHHHhHhCCCcchHHHHHHHHHHHhCC-CccccccHHHHHHHHHHHHHHHhCCC
Q 038854 73 MIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGG-HESMAMPAACSIEMIHTMSLIHDDLP 151 (353)
Q Consensus 73 l~~~~~~v~~~l~~~~~~~~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~-~~~~~~~lA~avEliH~asLIHDDI~ 151 (353)
+.+++..|++.|++.+....| ++++|++..||||+||.||+++++++|+ +.+.++++|++|||||+||||||||
T Consensus 9 ~~~~l~~v~~~l~~~~~~~~~----~~~~y~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~~A~avEliH~asLiHDDi- 83 (299)
T 1v4e_A 9 NSYELEKVKERIEQILSQFFP----EQIMKDLPLYGKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLASLLHDDV- 83 (299)
T ss_dssp CHHHHHHHHHHHHHHHHHHSC----HHHHTTSCCCCCCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhccCCH----HHHHHHHhCCCCcHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHhhCCC-
Confidence 456677899999988765545 9999999999999999999999999998 7778899999999999999999999
Q ss_pred CCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhccc------cc
Q 038854 152 CMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQAE------KD 225 (353)
Q Consensus 152 ~iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~l~~GQ~~------~~ 225 (353)
||+|++|||+||+|.+||+++|||+||+|++.||+.+++.. . .+++..+++++ .+++.||++ ..
T Consensus 84 -~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~----~---~~~~~~~~~~~--~~~~~GQ~~dl~~~~~~ 153 (299)
T 1v4e_A 84 -IDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIG----N---NKLRRAFLNVI--GKMSEAELIEQLSRYKP 153 (299)
T ss_dssp -HHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHC----C---HHHHHHHHHHH--HHHHHHHHHHHHHTTSC
T ss_pred -CCCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhCC----h---HHHHHHHHHHH--HHHhhhHHHHHHccCCC
Confidence 99999999999999999999999999999999999998751 1 34556666665 579999998 12
Q ss_pred CChhHHHHHHHhcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCc
Q 038854 226 LGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLT 305 (353)
Q Consensus 226 ~~~~~~~~i~~~KTg~L~~~~~~lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T 305 (353)
+++++|..|+.+|||+||++||++|++++|+++ +.+++||.++|++|||+||++|++++ +.+||+.|+|+++||+|
T Consensus 154 ~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~---~~l~~~g~~lG~aFQi~DD~lD~~~d-~~~GK~~g~Dl~egK~T 229 (299)
T 1v4e_A 154 ITKEEYLRIVEGKSGALFGLALQLPALLEGELG---EDLYNLGVTIGTIYQMFDDIMDFAGM-EKIGKDGFLDLKNGVAS 229 (299)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHHHHHHHHHHTTC-CSCCTTSSCCCTTTTCC
T ss_pred CCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHHHHHHHccCc-cccCCCcchHhhCCCch
Confidence 689999999999999999999999999999876 88999999999999999999999999 99999999999999999
Q ss_pred HHHHHhHHHHH
Q 038854 306 YPKLLGIEESK 316 (353)
Q Consensus 306 ~p~l~~le~a~ 316 (353)
||++++++.+.
T Consensus 230 ~p~l~al~~~~ 240 (299)
T 1v4e_A 230 FPLVTAMEKFP 240 (299)
T ss_dssp HHHHHHHHHCH
T ss_pred HHHHHHHHhCh
Confidence 99998765543
No 33
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=100.00 E-value=2.3e-57 Score=446.81 Aligned_cols=278 Identities=17% Similarity=0.224 Sum_probs=235.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHhCC----CCchhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCCc----c---ccccHHHH
Q 038854 68 DFKSYMIQKASTVNQALDAAVSL----KDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHE----S---MAMPAACS 136 (353)
Q Consensus 68 ~~~~~l~~~~~~v~~~l~~~~~~----~~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~~----~---~~~~lA~a 136 (353)
.+..++......|+..++..++. ..|+.+.++++|.+ .||||+||+||+++++++|++. + .+.++|++
T Consensus 34 ~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~y~~-~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~~a~~~A~a 112 (374)
T 2qis_A 34 EKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNA-IGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWC 112 (374)
T ss_dssp HHHHHHHHHHHHHHHHHTTC--CGGGHHHHHHHHHHHHHHS-SSSCCHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhc-CCCcchHHHHHHHHHHHhCCCCccchHHHHHHHHHHHH
Confidence 46777877777888888877654 23568899999987 7999999999999999998752 2 46789999
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCCCCcccccChh-HHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhh
Q 038854 137 IEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGED-VAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGAD 215 (353)
Q Consensus 137 vEliH~asLIHDDI~~iD~s~~RRG~pt~h~~~G~~-~Avl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~ 215 (353)
|||||++||||||| ||+|++|||+||+|++||++ +||++||++++.+|+.+++...+.+ ...+++..+++.+ .
T Consensus 113 vEliH~asLIHDDI--mD~s~~RRG~pt~h~~~G~~~~Ai~~g~~l~~~a~~~l~~~~~~~~--~~~~~~~~~~~~~--~ 186 (374)
T 2qis_A 113 VELLQAFFLVADDI--MDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQP--YYLNLIELFLQSS--Y 186 (374)
T ss_dssp HHHHHHHHHHHHHH--HTTCCEETTEECGGGSTTTGGGHHHHHHHHHHHHHHHHHHHHTTST--THHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHccc--cCCCCCCCCCccHHHhcCchHHHHHHHHHHHHHHHHHHHHhhcccc--cHHHHHHHHHHHH--H
Confidence 99999999999999 99999999999999999999 9999999999999999987532211 2334555555554 4
Q ss_pred hhhhhccc-----c-------cCChhHHHHHHHhcHHHH-HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHhhhhh
Q 038854 216 GLVAGQAE-----K-------DLGIEHLEFIHEHKTAAL-LEAAVVLGAILGG-GTDNEVEKLRTFARCIGLLFQVVDDI 281 (353)
Q Consensus 216 ~l~~GQ~~-----~-------~~~~~~~~~i~~~KTg~L-~~~~~~lga~lag-~~~~~~~~l~~~g~~lG~afQI~DDi 281 (353)
+++.||++ . .+++++|..|+++|||+| |++||++|++++| ++++..+.+++||.++|+||||+||+
T Consensus 187 ~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~~l~~~g~~lG~aFQI~DDi 266 (374)
T 2qis_A 187 QTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDY 266 (374)
T ss_dssp HHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999988 1 268899999999999999 9999999999999 99999999999999999999999999
Q ss_pred hhcccchhhhCCCcchhhhcCCCcHHHHHhHHH------------------------------------HHHHHHHHHHH
Q 038854 282 LDLTKSSKELGKTAGKDLVADKLTYPKLLGIEE------------------------------------SKKLADKLNKD 325 (353)
Q Consensus 282 ld~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~------------------------------------a~~~~~~~~~~ 325 (353)
+|++++++.+|| +|+|+++||+|||++++++. ++++++++.++
T Consensus 267 LD~~gd~~~~GK-~g~Dl~~gK~T~p~l~al~~a~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~ 345 (374)
T 2qis_A 267 LDLFGDPSVTGK-IGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSH 345 (374)
T ss_dssp HHHHSCHHHHCS-CCCTTTTTCCCHHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHccCChhhcCC-chhHHHcCCccHHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHH
Confidence 999999999999 99999999999999986542 24557788999
Q ss_pred HHHHHhcCCCCCh-HHHHHHHHHHHhccC
Q 038854 326 AQQQLSEFDQEKA-VPLIALANYIAYRQN 353 (353)
Q Consensus 326 A~~~L~~~~~~~~-~~L~~l~~~i~~R~~ 353 (353)
|++.|+.+|.+.. +.|..+++++.+|++
T Consensus 346 a~~~L~~lp~~~~k~~L~~l~~~i~~R~k 374 (374)
T 2qis_A 346 IMALIEQYAAPLPPAVFLGLARKIYKRRK 374 (374)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHHHHC----
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHHcCcC
Confidence 9999999987665 899999999999974
No 34
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=100.00 E-value=4.6e-58 Score=439.89 Aligned_cols=252 Identities=25% Similarity=0.328 Sum_probs=213.0
Q ss_pred HHHHhCCCCchhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCCccccccHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Q 038854 84 LDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKP 163 (353)
Q Consensus 84 l~~~~~~~~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~lA~avEliH~asLIHDDI~~iD~s~~RRG~p 163 (353)
+++.+... ++.+.++++|.+..||||+||.||+++++++|++.+.+.++|++||+||+|||||||| ||+|++|||+|
T Consensus 2 ~~k~~~~~-~~~l~~~~~y~~~~gGKr~Rp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLiHDDi--~D~s~~RRG~p 78 (301)
T 2q80_A 2 MEKTQETV-QRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDI--EDNSKLRRGFP 78 (301)
T ss_dssp -----CCH-HHHHTHHHHHHTTSSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHTCSEETTEE
T ss_pred cccccCCC-cHHHHHHHHHHHhCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHccc--cCCCCCCCCCc
Confidence 34455444 3479999999999999999999999999999988888899999999999999999999 99999999999
Q ss_pred CcccccChhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhccc------c--cCChhHHHHHH
Q 038854 164 TNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQAE------K--DLGIEHLEFIH 235 (353)
Q Consensus 164 t~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~l~~GQ~~------~--~~~~~~~~~i~ 235 (353)
|+|.+||+++|||+||+|++.||+.+++... + ...+ .+++.+ .+++.||++ . ..++++|..|+
T Consensus 79 t~h~~~G~~~AIl~GD~l~~~a~~~l~~~~~---~-~~~~---~~~~~~--~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i 149 (301)
T 2q80_A 79 VAHSIYGIPSVINSANYVYFLGLEKVLTLDH---P-DAVK---LFTRQL--LELHQGQGLDIYWRDNYTCPTEEEYKAMV 149 (301)
T ss_dssp CHHHHHCHHHHHHHHHHHHHHHHHHHHTTCC---T-THHH---HHHHHH--HHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred chhhccCcHHHHHHHHHHHHHHHHHHHHCCC---H-HHHH---HHHHHH--HHHHHHHHHHHHhccCCCCCCHHHHHHHH
Confidence 9999999999999999999999999987521 2 2233 344444 468999988 1 46899999999
Q ss_pred HhcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCcHHHHHhH---
Q 038854 236 EHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGI--- 312 (353)
Q Consensus 236 ~~KTg~L~~~~~~lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T~p~l~~l--- 312 (353)
++|||+||+++|++|++++|+++ .+++||.++|++|||+||++|++++++.+||+.|+|+++||+|||+++++
T Consensus 150 ~~KTa~L~~~~~~~ga~~a~~~~----~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~T~p~i~al~~~ 225 (301)
T 2q80_A 150 LQKTGGLFGLAVGLMQLFSDYKE----DLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSR 225 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCS----CCHHHHHHHHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHHHHHHHHS
T ss_pred HcccHHHHHHHHHHHHHHCCChH----HHHHHHHHHHHHHHHHHHHhhhcCChhhhCCCccchhhcCCcHHHHHHHHHcC
Confidence 99999999999999999998773 48999999999999999999999999999999999999999999999754
Q ss_pred ---------------------------------HHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhccC
Q 038854 313 ---------------------------------EESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 353 (353)
Q Consensus 313 ---------------------------------e~a~~~~~~~~~~A~~~L~~~~~~~~~~L~~l~~~i~~R~~ 353 (353)
+++++.++++.++|++.|+.+|.+. .|.++++++..|.|
T Consensus 226 ~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~A~~~L~~l~~~~--~L~~l~~~l~~~~~ 297 (301)
T 2q80_A 226 PESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNP--ELVALVKHLSKMFK 297 (301)
T ss_dssp TTCCHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCH--HHHHHHHHHHTTCC
T ss_pred ccchHHHHHHhcCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhc
Confidence 3667888999999999999998543 59999999988864
No 35
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=100.00 E-value=2.2e-57 Score=441.99 Aligned_cols=230 Identities=21% Similarity=0.289 Sum_probs=192.8
Q ss_pred HHHHHHHHHhCC--CCchhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCCccccccHHHHHHHHHHHHHHHhCCCCCCCC
Q 038854 79 TVNQALDAAVSL--KDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDND 156 (353)
Q Consensus 79 ~v~~~l~~~~~~--~~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~lA~avEliH~asLIHDDI~~iD~s 156 (353)
.|++.+.+.... ..++.+.++++|++..||||+||.||+++++++|++.+.+.++|++|||||+|||||||| ||+|
T Consensus 9 ~v~~~l~~~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLiHDDI--~D~s 86 (340)
T 2e8v_A 9 KIDELINNDPVWSSQNESLISKPYNHILLKPGKNFRLNLIVQINRVMNLPKDQLAIVSQIVELLHNSSLLIDDI--EDNA 86 (340)
T ss_dssp HHHHHHTSCCCCCHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH--HTTC
T ss_pred HHHHHHHhcccccccChHHHHHHHHHHHhCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhCcc--ccCC
Confidence 366666654432 124679999999999999999999999999999998888899999999999999999999 9999
Q ss_pred CCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhccc-----c-----cC
Q 038854 157 PLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQAE-----K-----DL 226 (353)
Q Consensus 157 ~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~l~~GQ~~-----~-----~~ 226 (353)
++|||+||+|.+||+++|||+||||++.||+.+++.. .+.....+++..+++++ .+++.||++ . ..
T Consensus 87 ~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~--~~~~~~~~~~~~~~~~~--~~~~~GQ~ldl~~~~~~~~~~~ 162 (340)
T 2e8v_A 87 PLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLT--TKEPLYHNLITIFNEEL--INLHRGQGLDIYWRDFLPEIIP 162 (340)
T ss_dssp SEETTEECHHHHTCHHHHHHHHHHHHHHHHHHGGGGC--CCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHSTTSCCC
T ss_pred CCCCCCcchhhccCchHHHHHHHHHHHHHHHHHHHcC--CchhhHHHHHHHHHHHH--HHHHHHHHHHHHhhcccccCCC
Confidence 9999999999999999999999999999999998752 23334455666677765 579999998 1 35
Q ss_pred ChhHHHHHHHhcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCcH
Q 038854 227 GIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTY 306 (353)
Q Consensus 227 ~~~~~~~i~~~KTg~L~~~~~~lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T~ 306 (353)
++++|..|+++|||+||+++|++|++++|+++ ..+.+++||.++|+||||+||++|++++++.+||++|+|+++||+||
T Consensus 163 t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~-~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tl 241 (340)
T 2e8v_A 163 TQEMYLNMVMNKTGGLFRLTLRLMEALSPSSH-HGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLSF 241 (340)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHC-----CCCTTHHHHTTCCCH
T ss_pred CHHHHHHHHHhhhHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchH
Confidence 88999999999999999999999999999887 57899999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHH
Q 038854 307 PKLLGIEES 315 (353)
Q Consensus 307 p~l~~le~a 315 (353)
|++++++.+
T Consensus 242 p~i~al~~~ 250 (340)
T 2e8v_A 242 PIVHALNFT 250 (340)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 998866543
No 36
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=100.00 E-value=1.9e-56 Score=438.98 Aligned_cols=278 Identities=18% Similarity=0.211 Sum_probs=232.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHhC-----CCCchhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCC----ccc---ccc---
Q 038854 68 DFKSYMIQKASTVNQALDAAVS-----LKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGH----ESM---AMP--- 132 (353)
Q Consensus 68 ~~~~~l~~~~~~v~~~l~~~~~-----~~~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~----~~~---~~~--- 132 (353)
++..++......++..++...+ ...++.+.++++|.+ .||||+||+||+++++++|++ ++. +++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~-~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~a~ 81 (362)
T 1yhl_A 3 SMERFLSVYDEVQAFLLDQLQSKYEIDPNRARYLRIMMDTTC-LGGKYFRGMTVVNVAEGFLAVTQHDEATKERILHDAC 81 (362)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-SSSCCHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHhhc-CCcccHHHHHHHHHHHHhCCCcCCChhhhHHHHHHHH
Confidence 4555555555556666655431 112357888899987 799999999999999999875 222 344
Q ss_pred -HHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCcccccCh--hHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Q 038854 133 -AACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE--DVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELA 209 (353)
Q Consensus 133 -lA~avEliH~asLIHDDI~~iD~s~~RRG~pt~h~~~G~--~~Avl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~l~ 209 (353)
+|++|||||++||||||| ||+|++|||+||+|.+||+ ++|||+||+|++.||+.+++...+ +....+++..++
T Consensus 82 ~~a~avEliH~asLiHDDI--~D~s~~RRG~pt~h~~~g~~~~~Ail~Gd~L~~~a~~~l~~~~~~--~~~~~~~~~~~~ 157 (362)
T 1yhl_A 82 VGGWMIEFLQAHYLVEDDI--MDGSVMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFAD--RPFLKDLLCLFQ 157 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHTCCEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHSTT--CTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhc--cCCCCCCCCCccHHhccCccHhHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHH
Confidence 778999999999999999 9999999999999999999 589999999999999999875322 223445666666
Q ss_pred HHHhhhhhhhhccc----c-------------------cCChhHHHHHHHhcHHHH-HHHHHHHHHHhCC-CCHHHHHHH
Q 038854 210 KYIGADGLVAGQAE----K-------------------DLGIEHLEFIHEHKTAAL-LEAAVVLGAILGG-GTDNEVEKL 264 (353)
Q Consensus 210 ~~i~~~~l~~GQ~~----~-------------------~~~~~~~~~i~~~KTg~L-~~~~~~lga~lag-~~~~~~~~l 264 (353)
+++ .+++.||++ . ..++++|..|+++|||+| |++||++|++++| ++++..+.+
T Consensus 158 ~~~--~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~l 235 (362)
T 1yhl_A 158 KVD--YATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLV 235 (362)
T ss_dssp HHH--HHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHH
T ss_pred HHH--HHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 665 478999987 3 246789999999999999 9999999999999 888888999
Q ss_pred HHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCcHHHHHh---------------------------------
Q 038854 265 RTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLG--------------------------------- 311 (353)
Q Consensus 265 ~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T~p~l~~--------------------------------- 311 (353)
++||.++|+||||+||++|++++++.+|| .|+||++||+|||++++
T Consensus 236 ~~~g~~lG~aFQi~DD~lD~~~d~~~~GK-~g~Dl~egK~T~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~ 314 (362)
T 1yhl_A 236 ERVAHLIGEYFQVQDDVMDCFTPPEQLGK-VGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGDKDPAKVAVVKRLYSE 314 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHSS-CCCTTTTTCCCHHHHHHHTTCCHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCChHHhCC-ChhhHhcCCchHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 89999999999999973
Q ss_pred ---HHHHHHHHHHHHHHHHHHHhcCCCCC-h--HHHHHHHHHHHhccC
Q 038854 312 ---IEESKKLADKLNKDAQQQLSEFDQEK-A--VPLIALANYIAYRQN 353 (353)
Q Consensus 312 ---le~a~~~~~~~~~~A~~~L~~~~~~~-~--~~L~~l~~~i~~R~~ 353 (353)
+++++++++++.++|++.|+.+|.+. . +.|.++++++.+|++
T Consensus 315 ~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~~~L~~l~~~i~~R~~ 362 (362)
T 1yhl_A 315 ANLQADFAAYEAEVVREVESLIEQLKVKSPTFAESVAVVWEKTHKRKK 362 (362)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHhccC
Confidence 34566788899999999999998765 4 579999999999975
No 37
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=100.00 E-value=2.5e-56 Score=438.42 Aligned_cols=277 Identities=19% Similarity=0.233 Sum_probs=234.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCC----CchhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCC----cc---ccccHHHHH
Q 038854 69 FKSYMIQKASTVNQALDAAVSLK----DPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGH----ES---MAMPAACSI 137 (353)
Q Consensus 69 ~~~~l~~~~~~v~~~l~~~~~~~----~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~----~~---~~~~lA~av 137 (353)
...++......|+..++..++.. .|+.+.++++|.+ .||||+||+||+++++++|++ ++ .+.++|++|
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~y~~-~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~A~ai 106 (367)
T 1uby_A 28 REEFVGFFPQIVRDLTEDGIGHPEVGDAVARLKEVLQYNA-PGGKCNRGLTVVAAYRELSGPGQKDAESLRCALAVGWCI 106 (367)
T ss_dssp HHHHHHTHHHHHHHHHTTTSSCTTTHHHHHHHHHHHHHHS-SSSCCHHHHHHHHHHHHHCCGGGCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHhhhc-CCCcchhHHHHHHHHHHhCCCccCChhhHHHHHHHHHHH
Confidence 34555555556666666655422 2468999999998 799999999999999999874 22 468999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCCCcccccChh-HHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhhh
Q 038854 138 EMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGED-VAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADG 216 (353)
Q Consensus 138 EliH~asLIHDDI~~iD~s~~RRG~pt~h~~~G~~-~Avl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~ 216 (353)
||||++||||||| ||+|++|||+||+|++||++ ++|+.||++++.||+.+++...+.+ ...+++..+++.+ .+
T Consensus 107 EliH~asLiHDDI--mD~s~~RRG~pt~h~~~g~~~~ai~dg~~l~~~a~~~l~~~~~~~~--~~~~~~~~~~~~~--~~ 180 (367)
T 1uby_A 107 ELFQAASLVADDI--MDQSLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRP--YYVHLLELFLQTA--YQ 180 (367)
T ss_dssp HHHHHHHHHHHHH--HHTCCEETTEECGGGSTTTTTHHHHHHHHHHHHHHHHHHHHHTTST--THHHHHHHHHHHH--HH
T ss_pred HHHHHHHHHhCcc--cCCCCCCCCCCChhhccCcHHHHHHHHHHHHHHHHHHHHHhccccc--cHHHHHHHHHHHH--HH
Confidence 9999999999999 99999999999999999999 9999999999999999987532211 2334555555554 46
Q ss_pred hhhhccc-----c-------cCChhHHHHHHHhcHHHH-HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHhhhhhh
Q 038854 217 LVAGQAE-----K-------DLGIEHLEFIHEHKTAAL-LEAAVVLGAILGG-GTDNEVEKLRTFARCIGLLFQVVDDIL 282 (353)
Q Consensus 217 l~~GQ~~-----~-------~~~~~~~~~i~~~KTg~L-~~~~~~lga~lag-~~~~~~~~l~~~g~~lG~afQI~DDil 282 (353)
++.||++ . ++++++|..|+++|||+| |++||++|++++| ++++..+.+++||.++|+||||+||++
T Consensus 181 ~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DD~L 260 (367)
T 1uby_A 181 TELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYL 260 (367)
T ss_dssp HHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999987 1 468899999999999999 9999999999999 899999999999999999999999999
Q ss_pred hcccchhhhCCCcchhhhcCCCcHHHHHhHHHH------------------------------------HHHHHHHHHHH
Q 038854 283 DLTKSSKELGKTAGKDLVADKLTYPKLLGIEES------------------------------------KKLADKLNKDA 326 (353)
Q Consensus 283 d~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a------------------------------------~~~~~~~~~~A 326 (353)
|++++++.+|| .|+|+++||+|||++++++.+ +++++++.++|
T Consensus 261 D~~gd~~~~GK-~g~Dl~egK~T~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~A 339 (367)
T 1uby_A 261 DCFGDPALTGA-VGTDIQDNKCSWLVVQCLQRVTPEQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRL 339 (367)
T ss_dssp HHHCCTTCSSC-CCCCSSSCCCCHHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HhcCChhhcCC-chhhHHcCCchHHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999976531 24577889999
Q ss_pred HHHHhcCCCCCh-HHHHHHHHHHHhccC
Q 038854 327 QQQLSEFDQEKA-VPLIALANYIAYRQN 353 (353)
Q Consensus 327 ~~~L~~~~~~~~-~~L~~l~~~i~~R~~ 353 (353)
++.|+.+|++.. +.|.++++++.+|++
T Consensus 340 ~~~L~~lp~~~~k~~L~~l~~~i~~R~~ 367 (367)
T 1uby_A 340 QELIEKHSNRLPKEIFLGLAQKIYKRQK 367 (367)
T ss_dssp HHHHHHHCSSSCTHHHHHHHHHHCCCCC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHhCcC
Confidence 999999987665 899999999999975
No 38
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=1.7e-56 Score=442.73 Aligned_cols=278 Identities=22% Similarity=0.239 Sum_probs=220.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCCc-----hhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCCc------cccccHHH
Q 038854 67 FDFKSYMIQKASTVNQALDAAVSLKDP-----VKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHE------SMAMPAAC 135 (353)
Q Consensus 67 ~~~~~~l~~~~~~v~~~l~~~~~~~~p-----~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~~------~~~~~lA~ 135 (353)
-+|..++.+....|.+.+.+.-...+| +.+.++++|.+ .||||+||+||+++++++|+++ +.+.++|+
T Consensus 34 ~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~-~GGKrlRp~Lvl~~~~~~g~~~~~~~~~~~a~~lA~ 112 (395)
T 2ihi_A 34 AFFRNMYDKYRDAFLSHLNEYSLEEEIKEHISKYYKLLFDYNC-LGGKNNRGILVILIYEYVKNRDINSSEWEKAACLAW 112 (395)
T ss_dssp -CTTTTHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHH-SSSCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCChhhhhhHHHHHHHHHHhhc-cCcccHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Confidence 445555555555666666653211122 46778899998 9999999999999999998752 45788999
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCCCCCCCcccccChhH--HHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Q 038854 136 SIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDV--AVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIG 213 (353)
Q Consensus 136 avEliH~asLIHDDI~~iD~s~~RRG~pt~h~~~G~~~--Avl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~l~~~i~ 213 (353)
+|||||++||||||| ||+|++|||+||+|++||++. |||+||+|++.+|+.+++...+. ....+++..+++++
T Consensus 113 aiEliH~asLIHDDI--mD~s~~RRG~pt~h~~~g~~~~~AI~~gd~L~~~a~~ll~~~~~~~--~~~~~~~~~~~~~~- 187 (395)
T 2ihi_A 113 CIEILQAAFLVADDI--MDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNE--SCYVDVIATFRDAT- 187 (395)
T ss_dssp HHHHHHHHHHHHHHH--HTTCSEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTS--TTHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhcc--ccCCCCCCCCCCccccCCccHHHHHHHHHHHHHHHHHHHHHhccCc--hhHHHHHHHHHHHH-
Confidence 999999999999999 999999999999999999998 99999999999999998753221 12345556666655
Q ss_pred hhhhhhhcccc-------------------------------cCChhHHHHHHHhcHHHH-HHHHHHHHHHhCCCCHHH-
Q 038854 214 ADGLVAGQAEK-------------------------------DLGIEHLEFIHEHKTAAL-LEAAVVLGAILGGGTDNE- 260 (353)
Q Consensus 214 ~~~l~~GQ~~~-------------------------------~~~~~~~~~i~~~KTg~L-~~~~~~lga~lag~~~~~- 260 (353)
.+++.||+++ .+++++|..|+++|||+| |.+||++|++++|++++.
T Consensus 188 -~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~lag~~~~~~ 266 (395)
T 2ihi_A 188 -LKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNL 266 (395)
T ss_dssp -HHHHHHHHHHHHTTSHHHHCSSSCCCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCTTCT
T ss_pred -HHHHHhHHHHHHhhhhcccccccccccccccccccccccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhhH
Confidence 4689999872 346789999999999999 999999999999998887
Q ss_pred -HHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCcHHHHH-----------------------------
Q 038854 261 -VEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLL----------------------------- 310 (353)
Q Consensus 261 -~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T~p~l~----------------------------- 310 (353)
.+.++.||.+||+||||+||++|++++++.+|| .|+|+++||+|||+++
T Consensus 267 ~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~g~Dl~egK~T~p~l~al~~~~~~~~~~L~~~~~~~~~~~~~~v~ 345 (395)
T 2ihi_A 267 IYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGK-VGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVID 345 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCC----------CTTTTTCCCHHHHHHHHHCCHHHHHHHHHHCC-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhCC-CcchhhcCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHH
Confidence 899999999999999999999999999999999 9999999999999997
Q ss_pred -------hHHHHHHHHHHHHHHHHHHHhcCCCCCh-HHHHHHHHHHHhcc
Q 038854 311 -------GIEESKKLADKLNKDAQQQLSEFDQEKA-VPLIALANYIAYRQ 352 (353)
Q Consensus 311 -------~le~a~~~~~~~~~~A~~~L~~~~~~~~-~~L~~l~~~i~~R~ 352 (353)
++++++++++++.++|++.|+.+|++.. +.|..|++++.+|.
T Consensus 346 ~l~~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~r~~L~~l~~~i~~R~ 395 (395)
T 2ihi_A 346 SLYEQYKIRKHYESYEKAQKAKILSAINELHHEGIEYVLKYLLEILFTGV 395 (395)
T ss_dssp HC----CHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHC-----
T ss_pred HHHHHCChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhccC
Confidence 3566778899999999999999998666 89999999999883
No 39
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=100.00 E-value=6.3e-56 Score=438.43 Aligned_cols=278 Identities=19% Similarity=0.227 Sum_probs=227.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHhCCC--CchhHHHHHHHhHhCCCcchHHHHHHHHHHHhCC-------------Ccccccc
Q 038854 68 DFKSYMIQKASTVNQALDAAVSLK--DPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGG-------------HESMAMP 132 (353)
Q Consensus 68 ~~~~~l~~~~~~v~~~l~~~~~~~--~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~-------------~~~~~~~ 132 (353)
.|..++.+....+.+.+...++.. .+..+.++++|.+ .||||+||+||+++++++|+ +.+.+++
T Consensus 28 ~f~~~~~~v~~~l~~~l~~~~~~~~~~~~~l~~~m~Y~~-~GGKr~Rp~l~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 106 (390)
T 3dyh_A 28 MFMQVYDEIQMFLLEELELKFDMDPNRVRYLRKMMDTTC-LGGKYNRGLTVIDVAESLLSLSPNNNGEEDDGARRKRVLH 106 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH-SSSCCHHHHHHHHHHHHTSCC---------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhc-CCccchhHHHHHHHHHHhCCccccccccccccCCHHHHHH
Confidence 344444433333444444443321 2357999999998 99999999999999999886 2345667
Q ss_pred HHH----HHHHHHHHHHHHhCCCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHH--HHHHHHhccCCCChHHHHHHHH
Q 038854 133 AAC----SIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAY--AFEHIAVCTKGVSPARIVRAIA 206 (353)
Q Consensus 133 lA~----avEliH~asLIHDDI~~iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~--a~~~l~~~~~~~~~~~~~~~~~ 206 (353)
+|+ +|||||++||||||| ||+|++|||+||+|++||+++||++||+++.. +|+.+++...+. + ...+++.
T Consensus 107 ~A~~~g~avEliH~asLIHDDI--mD~s~~RRG~Pt~h~~~G~~~ail~gD~ll~~a~a~~ll~~~~~~~-~-~~~~~~~ 182 (390)
T 3dyh_A 107 DACVCGWMIEFLQAHYLVEDDI--MDNSVTRRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADR-P-FLQDLLC 182 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHTCCEETTEECGGGSTTCCHHHHHHHHHHHHHHHHHHHHHHSTTC-T-THHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHcCC--cCCCCCcCCCccccccCChHHHHHHHHHHHHHHHHHHHHHHhccCc-h-hHHHHHH
Confidence 776 799999999999999 99999999999999999999999999999875 478887642221 1 1234455
Q ss_pred HHHHHHhhhhhhhhccc---c--------------------cCChhHHHHHHHhcHHHH-HHHHHHHHHHhCCCCHHH-H
Q 038854 207 ELAKYIGADGLVAGQAE---K--------------------DLGIEHLEFIHEHKTAAL-LEAAVVLGAILGGGTDNE-V 261 (353)
Q Consensus 207 ~l~~~i~~~~l~~GQ~~---~--------------------~~~~~~~~~i~~~KTg~L-~~~~~~lga~lag~~~~~-~ 261 (353)
.+++.+ .+++.||++ . ++++++|..|+++|||+| |++||++|++++|++++. .
T Consensus 183 ~~~~~~--~~~~~GQ~lDl~~~~e~~~~d~~~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~laga~~~~~~ 260 (390)
T 3dyh_A 183 RFNRVD--YTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDM 260 (390)
T ss_dssp HHHHHH--HHHHHHHHHHHTTTSCGGGCCTTSCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCH
T ss_pred HHHHHH--HHHHHHHHHHHhhcccccccccccccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCChHHHH
Confidence 555544 468899987 2 257889999999999999 999999999999998775 7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCcHHHHH-------------------------------
Q 038854 262 EKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLL------------------------------- 310 (353)
Q Consensus 262 ~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T~p~l~------------------------------- 310 (353)
+.+++||.+||+||||+||++|++++++.+|| .|+|+++||+|||+++
T Consensus 261 ~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK-~g~Dl~egK~T~pvi~al~~~~~~~r~~L~~~~~~~~~~~v~~v~~l 339 (390)
T 3dyh_A 261 GVTEELAMLMGEYFQVQDDVMDCFTPPERLGK-VGTDIQDAKCSWLAVTFLAKASSAQVAEFKANYGSGDSEKVATVRRL 339 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS-CCCTTTTTCCCHHHHHHHHHCCHHHHHHHHTTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChHHhCC-CcchhhcCCccHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 89999999999999999999999999999999 9999999999999997
Q ss_pred -----hHHHHHHHHHHHHHHHHHHHhcCCCCC---hHHHHHHHHHHHhccC
Q 038854 311 -----GIEESKKLADKLNKDAQQQLSEFDQEK---AVPLIALANYIAYRQN 353 (353)
Q Consensus 311 -----~le~a~~~~~~~~~~A~~~L~~~~~~~---~~~L~~l~~~i~~R~~ 353 (353)
++++++++++++.++|.+.|+.+|.+. .+.|..|++++.+|++
T Consensus 340 ~~~~g~~~~~~~~~~~~~~~a~~~i~~l~~~~~~~~~~l~~l~~~i~~R~k 390 (390)
T 3dyh_A 340 YEEADLQGDYVAYEAAVAEQVKELIEKLRLCSPGFAASVETLWGKTYKRQK 390 (390)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTTTTCCC
T ss_pred HHHCCcHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHcCCC
Confidence 356677888999999999999998766 3789999999999975
No 40
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=100.00 E-value=5.2e-55 Score=413.40 Aligned_cols=248 Identities=27% Similarity=0.511 Sum_probs=220.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCCccccccHHHHHHHHHHHHHHHhC
Q 038854 70 KSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDD 149 (353)
Q Consensus 70 ~~~l~~~~~~v~~~l~~~~~~~~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~lA~avEliH~asLIHDD 149 (353)
++|+++....|++.|.+.++...|..+.++++|++..||||+||.||+++++++|++.+.++++|++|||||++||||||
T Consensus 2 ~~~~~~~~~~ie~~L~~~l~~~~p~~l~~~~~y~~~~gGKrlRP~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSLIHDD 81 (274)
T 3kra_B 2 QPYWAAIEADIERYLKKSITIRPPETVFGPMHHLTFAAPATAASTLCLAACELVGGDRSQAMAAAAAIHLVHAAAYVHEH 81 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCCSSHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 46788888889999999999887877999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhccCC---CChHHHHHHHHHHHHHHhhhhhhhhccc---
Q 038854 150 LPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKG---VSPARIVRAIAELAKYIGADGLVAGQAE--- 223 (353)
Q Consensus 150 I~~iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~~~---~~~~~~~~~~~~l~~~i~~~~l~~GQ~~--- 223 (353)
|||+|++ .|||+||+|++||+++|||+||+|++.||+.+++.... .++..+.+++.++++++|..+++.||++
T Consensus 82 I~~dD~d-~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~~l~~a~G~~~~~~GQ~lDl~ 160 (274)
T 3kra_B 82 LPLTDGS-RPVSKPAIQHKYGPNVELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISGLHREEE 160 (274)
T ss_dssp CCCSSSS-SCCCSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHHHTSTTTHHHHHHHHTT
T ss_pred CcccCCc-cCCCCCCchhhcChHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHhHHHHHHhHHHHHh
Confidence 9766776 69999999999999999999999999999999976432 2345678888999998887789999998
Q ss_pred ---ccCChhHHHHHHHhcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhh
Q 038854 224 ---KDLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLV 300 (353)
Q Consensus 224 ---~~~~~~~~~~i~~~KTg~L~~~~~~lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~ 300 (353)
...++++|.+|+++|||+||++||++|++++|++++.++.+++||.++|++|||+||.+- ||
T Consensus 161 ~~~~~~t~~~y~~~i~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lG~aFQI~DD~~~--------~~------- 225 (274)
T 3kra_B 161 IVDGNTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMKNS--------HQ------- 225 (274)
T ss_dssp CCTTSSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHTTT--------SC-------
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhhcc--------cc-------
Confidence 256789999999999999999999999999999999999999999999999999999711 22
Q ss_pred cCCCcHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 038854 301 ADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALA 345 (353)
Q Consensus 301 ~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~~~~~~~~~L~~l~ 345 (353)
+++.+.++++.++|++.|+.|+.++..+|.+|+
T Consensus 226 ------------~~~~~~~~~~~~~A~~~L~~~~~~~~~pl~~~~ 258 (274)
T 3kra_B 226 ------------LIDENIIGKLKELALEELGGFHGKNAELMSSLV 258 (274)
T ss_dssp ------------CCCHHHHHHHHHHHHHHHTTSCSSHHHHTGGGG
T ss_pred ------------HHHHHHHHHHHHHHHHHHHcCCchhhhhHHHHH
Confidence 455788999999999999999876667776654
No 41
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=9.5e-55 Score=431.34 Aligned_cols=275 Identities=21% Similarity=0.263 Sum_probs=214.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhCCCCch-----hHHHHHHHhHhCCCcchHHHHHHHHHHHhCCCc------cccccHH
Q 038854 66 TFDFKSYMIQKASTVNQALDAAVSLKDPV-----KIHESMRYSLLAGGKRVRPVLCLAACDLVGGHE------SMAMPAA 134 (353)
Q Consensus 66 ~~~~~~~l~~~~~~v~~~l~~~~~~~~p~-----~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~~------~~~~~lA 134 (353)
.-.|...+.+..+.+.+.|.+.....+|. .+...+.|.+ .||||+||+||+++++++|+.. +.++++|
T Consensus 33 ~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~-~GGKRlRP~l~l~~~~~~~~~~~~~~~~~~~~~~A 111 (395)
T 3mav_A 33 LAFFRNMYDKYRDAFLSHLNEYSLEEEIKEHISKYYKLLFDYNC-LGGKNNRGILVILIYEYVKNRDINSSEWEKAACLA 111 (395)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHH-SSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCC-CCchhhhHHHHHHHHHHhCCCCCCcccHHHHHHHH
Confidence 45688888888888998888755433332 2334456666 6999999999999999997643 4578899
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCCCCCcccccChhHHHHHHHHHH--HHHHHHHHhccCCCChHHHHHHHHHHHHHH
Q 038854 135 CSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALL--AYAFEHIAVCTKGVSPARIVRAIAELAKYI 212 (353)
Q Consensus 135 ~avEliH~asLIHDDI~~iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll--~~a~~~l~~~~~~~~~~~~~~~~~~l~~~i 212 (353)
++|||||+|||||||| ||+|++|||+||+|++||+++||++||+|+ +.++.++.....+ .....+++..+++++
T Consensus 112 ~aiEliH~asLiHDDI--mD~s~~RRG~pt~h~~~g~~~Ail~GD~ll~~~~~~~ll~~~~~~--~~~~~~~~~~~~~~~ 187 (395)
T 3mav_A 112 WCIEILQAAFLVADDI--MDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRN--ESCYVDVIATFRDAT 187 (395)
T ss_dssp HHHHHHHHHHHHHHHH--HTTCSEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTT--STTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHH--hcCCCCCCCchhhhhccchHHHHHhhhHHHHHHHHHHHHHHhccC--hhHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999999999976 4567777654322 223456666676665
Q ss_pred hhhhhhhhcccc-------------------------------cCChhHHHHHHHhcHHHH-HHHHHHHHHHhCCCC--H
Q 038854 213 GADGLVAGQAEK-------------------------------DLGIEHLEFIHEHKTAAL-LEAAVVLGAILGGGT--D 258 (353)
Q Consensus 213 ~~~~l~~GQ~~~-------------------------------~~~~~~~~~i~~~KTg~L-~~~~~~lga~lag~~--~ 258 (353)
..++.||.++ .+++++|..|+++|||+| |.+||.+|++++|++ +
T Consensus 188 --~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ag~~~d~ 265 (395)
T 3mav_A 188 --LKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDN 265 (395)
T ss_dssp --HHHHHHHHHHHHTTSHHHHCC-CCCCSSCSSSCCCCCCCGGGCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCTTC
T ss_pred --HHHHHHHHHHHHHHhccchhHHHHhhhcccccchhcccccccCCHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchh
Confidence 4689999761 247889999999999999 999999999999875 3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCcHHHHHhH--------------------------
Q 038854 259 NEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGI-------------------------- 312 (353)
Q Consensus 259 ~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T~p~l~~l-------------------------- 312 (353)
+.++.+++||.+||+||||+||++|++++++.+|| .|+||++||+|||+++++
T Consensus 266 ~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK-~g~Dl~egK~T~p~i~al~~~~~~~r~~L~~~~~~~d~~~~~~v 344 (395)
T 3mav_A 266 LIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGK-VGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVI 344 (395)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHC---------CCCTTTTTCCCHHHHHHHHHSCHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHhhhcc-cccHHhcCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHH
Confidence 46789999999999999999999999999999999 599999999999999843
Q ss_pred ----------HHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhc
Q 038854 313 ----------EESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYR 351 (353)
Q Consensus 313 ----------e~a~~~~~~~~~~A~~~L~~~~~~~~~~L~~l~~~i~~R 351 (353)
++++++++++.++|.+.|+.+|. +.+..+.+++++|
T Consensus 345 ~~l~~~~g~~~~~~~~~~~~~~~a~~~l~~l~~---~~l~~ll~~lle~ 390 (395)
T 3mav_A 345 DSLYEQYKIRKHYESYEKAQKAKILSAINELHH---EGIEYVLKYLLEI 390 (395)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSCC---HHHHHHHHHHHHH
T ss_pred HHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHH
Confidence 44567778888999999999875 3455566666554
No 42
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=100.00 E-value=6.6e-56 Score=434.11 Aligned_cols=271 Identities=19% Similarity=0.160 Sum_probs=225.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHhCCCCc-----hhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCC----ccccccHHHHHH
Q 038854 68 DFKSYMIQKASTVNQALDAAVSLKDP-----VKIHESMRYSLLAGGKRVRPVLCLAACDLVGGH----ESMAMPAACSIE 138 (353)
Q Consensus 68 ~~~~~l~~~~~~v~~~l~~~~~~~~p-----~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~----~~~~~~lA~avE 138 (353)
+|...+.+....|++.+.+.-...+| +.+.++++|.+ .||||+||++|+++++++|+. .+.+.++|++||
T Consensus 27 ~f~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~y~~-~GGKrlRp~l~l~~~~~~g~~~~~~~~~~~~~A~avE 105 (368)
T 2her_A 27 DFINYYDKFKVIVYNVLKKLPLNDEIRKPVIEYYLNCIDYNV-KKGKHIRGKILVLISSLSSAYSNIKRDSIYLLGWVVE 105 (368)
T ss_dssp TGGGTHHHHHHHHHTTCCCCTTSCCTTTTHHHHHHHHHHHHT-TSSTTTTTC-CHHHHTTTTCCCSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHhh-CCCCccchHHHHHHHHHhCCCCcccHHHHHHHHHHHH
Confidence 34444444444455555442222334 56677778876 999999999999999999863 356789999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCCCCCcccccChhHHHHHHHHHH---HHHHHHHHhccCCCChHHHHHHHHHHHHHHhhh
Q 038854 139 MIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALL---AYAFEHIAVCTKGVSPARIVRAIAELAKYIGAD 215 (353)
Q Consensus 139 liH~asLIHDDI~~iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll---~~a~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~ 215 (353)
|||++||||||| ||+|++|||+||+|++||+.+|||+||+|+ +.+|+.+++... .....+++..+++++ .
T Consensus 106 llH~asLIHDDI--mD~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~a~~ll~~~~~---~~~~~~~~~~~~~~~--~ 178 (368)
T 2her_A 106 AIQALILIADDI--MDSGKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSSVFG---NDIVMKIQKIYNESI--F 178 (368)
T ss_dssp HHHHHHHHHHHH--HTTCCEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHHHHC---HHHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHccc--ccCCCCCCCCccHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcC---cChHHHHHHHHHHHH--H
Confidence 999999999999 999999999999999999999999999999 889988875311 111456777777765 5
Q ss_pred hhhhhcccc--------cCCh-hHHHHHHHhcHHHH-HHHHHHHHHHhCCCCHHH--HHHHHHHHHHHHHHHHhhhhhhh
Q 038854 216 GLVAGQAEK--------DLGI-EHLEFIHEHKTAAL-LEAAVVLGAILGGGTDNE--VEKLRTFARCIGLLFQVVDDILD 283 (353)
Q Consensus 216 ~l~~GQ~~~--------~~~~-~~~~~i~~~KTg~L-~~~~~~lga~lag~~~~~--~~~l~~~g~~lG~afQI~DDild 283 (353)
+++.||+++ ..+. ++|..|+++|||+| |++||++|++++|++++. .+.+++||.++|+||||+||++|
T Consensus 179 ~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD 258 (368)
T 2her_A 179 FTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSD 258 (368)
T ss_dssp HHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999981 3445 88999999999999 999999999999998887 88999999999999999999999
Q ss_pred cccchhhhCCCcchhhhcCCCcHHHHH--------------------------------hHHHHHHHHHHHHHHHHHHHh
Q 038854 284 LTKSSKELGKTAGKDLVADKLTYPKLL--------------------------------GIEESKKLADKLNKDAQQQLS 331 (353)
Q Consensus 284 ~~~~~~~~GK~~g~Dl~~gk~T~p~l~--------------------------------~le~a~~~~~~~~~~A~~~L~ 331 (353)
++ .+|| .|+||++||+|||+++ ++++++++++++.++|++.|+
T Consensus 259 ~~----~~GK-~g~Dl~egK~T~pvi~al~~a~~~~r~~L~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~ 333 (368)
T 2her_A 259 YL----FNDS-NADDICRFKLTWPLQKSFEIADEEMKLKISENYGKNSSLVKDCYNLLKINEHYLEYQRNALDYLIKLVK 333 (368)
T ss_dssp HH----SCCS-SSCTTTTTCCCHHHHSSTTTCCHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HH----hcCC-CCChHhCCcccHHHHHHHHhCCHHHHHHHHHHhCCcHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHH
Confidence 98 7899 9999999999999997 346678889999999999999
Q ss_pred cCCCCCh-HHHHHHHHHHHhc
Q 038854 332 EFDQEKA-VPLIALANYIAYR 351 (353)
Q Consensus 332 ~~~~~~~-~~L~~l~~~i~~R 351 (353)
.+|.+.. +.|..|+++|.++
T Consensus 334 ~lp~~~~k~~L~~l~~~i~~~ 354 (368)
T 2her_A 334 DITDDSLQKVFIHLIHQISEL 354 (368)
T ss_dssp TCSCHHHHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHHHH
Confidence 9998766 8899999999875
No 43
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=100.00 E-value=5.6e-53 Score=399.36 Aligned_cols=249 Identities=27% Similarity=0.454 Sum_probs=222.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCCccccccHHHHHHHHHHHHHH
Q 038854 67 FDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLI 146 (353)
Q Consensus 67 ~~~~~~l~~~~~~v~~~l~~~~~~~~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~lA~avEliH~asLI 146 (353)
-.+..|+......|++.|++.++...|..+.++++|++..||||+||.||+++++++|++.+.++++|++|||||++|||
T Consensus 4 ~~~~~~~~~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~gGKrlRP~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSLI 83 (273)
T 3qkc_B 4 TRTQTYRATIESDIESYLKKAIPIRAPESVFEPMHHLTFAAPRTSASALCVAACELVGGDRSDAMAAAAAVHLMHVAAYT 83 (273)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCCCCSSTTHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCGGGTHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46778898888899999999998887877999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhccCC--CChHHHHHHHHHHHHHHhhhhhhhhccc-
Q 038854 147 HDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKG--VSPARIVRAIAELAKYIGADGLVAGQAE- 223 (353)
Q Consensus 147 HDDI~~iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~~~--~~~~~~~~~~~~l~~~i~~~~l~~GQ~~- 223 (353)
|||| +|+|+ |||+||+|++||+++|||+||+|++.||+.+++.... .++..+.+++.++++++|..+++.||++
T Consensus 84 HDDI--~D~d~-RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lD 160 (273)
T 3qkc_B 84 HENL--PLTDG-PMSKSEIQHKFDPNIELLTGDGIIPFGLELMARSMDPTRNNPDRILRAIIELTRVMGSEGIVEGQYHE 160 (273)
T ss_dssp HHSC--CBTTB-CSSSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HcCc--ccCcc-CCCCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence 9999 78887 9999999999999999999999999999999976421 2455778889999998887789999988
Q ss_pred ----ccCChhHHHHHHHhcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhh
Q 038854 224 ----KDLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDL 299 (353)
Q Consensus 224 ----~~~~~~~~~~i~~~KTg~L~~~~~~lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl 299 (353)
...+.++++.|+++|||+||++||++|++++|++++.++.+++||.++|++|||+||+.+- +
T Consensus 161 l~~~~~~~~eyl~~I~~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lGlaFQI~DD~~~~----~---------- 226 (273)
T 3qkc_B 161 LGLNQLNDLELIEYVCKKKEGTLHACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGLLGKNRSG----F---------- 226 (273)
T ss_dssp TTCCSSCCHHHHHHHHHHTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTTCCST----T----------
T ss_pred HhcCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhc----h----------
Confidence 2345677777889999999999999999999999999999999999999999999999741 0
Q ss_pred hcCCCcHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 038854 300 VADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYI 348 (353)
Q Consensus 300 ~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~~~~~~~~~L~~l~~~i 348 (353)
.++++++.++|++.|+.|+..+..+|.++++|-
T Consensus 227 ----------------~~~~~~~~~~a~~~l~~~~~~~~~~l~~~~~~~ 259 (273)
T 3qkc_B 227 ----------------EGRIKELKELAVKELESFGGEKIELIRGVFELE 259 (273)
T ss_dssp ----------------HHHHHHHHHHHHHHHTTCCSSHHHHHHHHTTC-
T ss_pred ----------------HHHHHHHHHHHHHHHHccCchhhhHHHHHHHHH
Confidence 168899999999999999876568999988764
No 44
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=100.00 E-value=1.4e-54 Score=426.40 Aligned_cols=276 Identities=19% Similarity=0.209 Sum_probs=220.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhCCCC----c--hhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCC----ccccccHHH
Q 038854 66 TFDFKSYMIQKASTVNQALDAAVSLKD----P--VKIHESMRYSLLAGGKRVRPVLCLAACDLVGGH----ESMAMPAAC 135 (353)
Q Consensus 66 ~~~~~~~l~~~~~~v~~~l~~~~~~~~----p--~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~----~~~~~~lA~ 135 (353)
+.||..|+.+....|+..+++. +..+ + .++.++++|.+ .||||+||++|+++++++|+. .+.++++|+
T Consensus 25 ~~df~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~~l~Y~~-~GGKrlRp~l~~~~~~~~~~~~~~~~e~~~~la~ 102 (368)
T 2q58_A 25 YTDFINYYDKFKVIVYNVLKKL-PLNDEIRKPVIEYYLNCIDYNV-KKGKHIRGKILVLISSLSSAYSNIKRDSIYLLGW 102 (368)
T ss_dssp CTTGGGTHHHHHHHHHTTCCCC-CSSCSTTCCHHHHHHHHHHHHT-TCSTTTTTC-CHHHHTTTTCCCSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-ccchhhhHHHHHHHHHHHhcCC-CCccchhHHHHHHHHHHhCCCccCCHHHHHHHHH
Confidence 4566666655444455555432 3221 1 45778999987 899999999999999999864 356788999
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhh
Q 038854 136 SIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGAD 215 (353)
Q Consensus 136 avEliH~asLIHDDI~~iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~ 215 (353)
+|||||+|||||||| ||+|++|||+||+|++||+++|||+||+|++.||+.+.+.....+.+...+++..+++++ .
T Consensus 103 aiEliH~asLiHDDi--mD~s~~RRG~pt~h~~~G~~~AIl~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~--~ 178 (368)
T 2q58_A 103 VVEAIQALILIADDI--MDSGKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESI--F 178 (368)
T ss_dssp HHHHHHHHHHHHHHH--HTTCCEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHHhhc--ccCCCCCCCCCccccCcchhhHHHHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHH--H
Confidence 999999999999999 999999999999999999999999999999999999986543334455567777777765 4
Q ss_pred hhhhhccc---------ccCChhHHHHHHHhcHHHH-HHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 038854 216 GLVAGQAE---------KDLGIEHLEFIHEHKTAAL-LEAAVVLGAILGG--GTDNEVEKLRTFARCIGLLFQVVDDILD 283 (353)
Q Consensus 216 ~l~~GQ~~---------~~~~~~~~~~i~~~KTg~L-~~~~~~lga~lag--~~~~~~~~l~~~g~~lG~afQI~DDild 283 (353)
.++.||.+ .+.+.++|..|+.+|||+| |.+||.+|++++| ++++.++.++.||.++|+||||+||++|
T Consensus 179 ~~~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~l~~~g~~lG~aFQI~DDiLD 258 (368)
T 2q58_A 179 FTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSD 258 (368)
T ss_dssp HHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHhhhcccCCchHHHHHHHHHHHhccccchHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 68899987 1345688999999999998 8999999999998 5667788999999999999999999999
Q ss_pred cccchhhhCCCcchhhhcCCCcHHHHHhHH--------------------------------HHHHHHHHHHHHHHHHHh
Q 038854 284 LTKSSKELGKTAGKDLVADKLTYPKLLGIE--------------------------------ESKKLADKLNKDAQQQLS 331 (353)
Q Consensus 284 ~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le--------------------------------~a~~~~~~~~~~A~~~L~ 331 (353)
+++ ||+.|+||++||+|||++++++ .+.+++++..+++.+.++
T Consensus 259 ~~~-----gK~~g~Dl~egK~T~p~i~al~~~~~~~r~~L~~~~~~~~~~vk~l~~~l~~~~~~~ey~~~~~~~~~~~i~ 333 (368)
T 2q58_A 259 YLF-----NDSNADDICRFKLTWPLQKSFEIADEEMKLKISENYGKNSSLVKDCYNLLKINEHYLEYQRNALDYLIKLVK 333 (368)
T ss_dssp HHS-----CCCSSCTTTSCCCCHHHHSSTTTCCHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccc-----CCCCCchHhcCCcHHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 974 8999999999999999998432 344566777888888888
Q ss_pred cCCCCCh-H----HHHHHHHHHHhcc
Q 038854 332 EFDQEKA-V----PLIALANYIAYRQ 352 (353)
Q Consensus 332 ~~~~~~~-~----~L~~l~~~i~~R~ 352 (353)
.+|.... + .|..|++++++|+
T Consensus 334 ~l~~~~~k~~l~~ll~kI~~~~~~rk 359 (368)
T 2q58_A 334 DITDDSLQKVFIHLIHQISELITNSR 359 (368)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHCC--
T ss_pred hccchhHHHHHHHHHHHHHHHHHHhh
Confidence 8875443 3 4556667776663
No 45
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=100.00 E-value=1.1e-52 Score=397.92 Aligned_cols=220 Identities=25% Similarity=0.372 Sum_probs=187.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHhHhCCCcchHHHHHHHHHHHhCC---CccccccHHHHHHHHHHH
Q 038854 67 FDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGG---HESMAMPAACSIEMIHTM 143 (353)
Q Consensus 67 ~~~~~~l~~~~~~v~~~l~~~~~~~~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~---~~~~~~~lA~avEliH~a 143 (353)
..+...+++++..|++.|++.+....|+.+.++++|.+..||||+||.||+++++++|+ +.+.+.++|++||+||+|
T Consensus 4 ~~l~~~i~~~l~~ve~~L~~~l~~~~~~~l~~~~~y~~~~gGKrlRp~Lvll~~~~~g~~~~~~~~~~~~A~aiEliH~a 83 (285)
T 4fp4_A 4 YSLPPEVLAALERVKARLNKVGEELEPISLRKAVRHYIETPGKLLRPLLLLTFTYSIDRRSIMDPRILEAAAIVELLHVV 83 (285)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTTTTCSSHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHH
Confidence 34667899999999999999998775678999999999999999999999999999998 778889999999999999
Q ss_pred HHHHhCCCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhccc
Q 038854 144 SLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQAE 223 (353)
Q Consensus 144 sLIHDDI~~iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~l~~GQ~~ 223 (353)
||||||| ||+|++|||+||+|++||+++|||+||+|++.||+.+++. ++ +++..+++++ .+++.||.+
T Consensus 84 SLIHDDI--mD~s~~RRG~Pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~----~~----~~~~~ls~~~--~~~~~GQ~l 151 (285)
T 4fp4_A 84 SLLQDDV--MDQHDQRRGIKTPRAMYGDGRAIVASDWLIAESIKMAVNL----GA----DVVTYLADVA--QRLSVGQAL 151 (285)
T ss_dssp HHHHHHH--HTTCSBSSSSBCHHHHHCHHHHHHHHHHHHHHHHHHHHTT----CH----HHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHCCC--CCCCCCCCCCCcHHHhcChHHHHHHHHHHHHHHHHHHHHh----hH----HHHHHHHHHH--HHHHHhHHH
Confidence 9999999 9999999999999999999999999999999999999864 22 5566667766 479999998
Q ss_pred ccCChhHHHHHHHhcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcC
Q 038854 224 KDLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVAD 302 (353)
Q Consensus 224 ~~~~~~~~~~i~~~KTg~L~~~~~~lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~g 302 (353)
+-...... |+++|||+||++||++|++++|++ +.++.+++||.++|+||||+||++|++++++ .||+.|+||+++
T Consensus 152 Dl~~~~~~--~i~~KTg~Lf~~a~~lGa~lag~~-~~~~~l~~~G~~lGlAFQI~DDiLD~~~d~~-~~k~~g~DI~e~ 226 (285)
T 4fp4_A 152 DLEGERDK--AAEFKTAPLIEAALVMPLVILGRR-ELIETAKKLGTKLGILYQYSDDYSDENVERP-ETKSIANEIGRY 226 (285)
T ss_dssp HHTTCHHH--HHHHHTHHHHHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHTTCC---------CH-HHHHHHHHHHHH
T ss_pred HHhccccc--hhhcCcHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcc-ccCccHHHHHHH
Confidence 43222221 889999999999999999999998 8889999999999999999999999998765 688899999877
No 46
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=94.24 E-value=1.5 Score=40.76 Aligned_cols=103 Identities=17% Similarity=0.093 Sum_probs=60.2
Q ss_pred CChhHHHHHHHhcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCC-----------
Q 038854 226 LGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKT----------- 294 (353)
Q Consensus 226 ~~~~~~~~i~~~KTg~L~~~~~~lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~----------- 294 (353)
.+.++++..+.+-.|....+++. +++..+++ ...++.++|.|+|+.|=+.|+-.|- ..|.-
T Consensus 123 ~t~~dL~~Y~~~vAg~VG~m~~~---i~g~~~~~----~~~~A~~lG~AlQltNilRDv~eD~-~~gR~YlP~~~l~~~g 194 (294)
T 4hd1_A 123 DTWEDLRDYCRYSADPVGRLVLG---IFGCLDDE----RARLSDATCTALQVANHMQDIDRDL-ALGRIYVPRADLEQFG 194 (294)
T ss_dssp CSHHHHHHHHHHHTHHHHHHHHH---HTTCCSHH----HHHHHHHHHHHHHHHHHHHTHHHHH-HTTCBCSCHHHHHTTT
T ss_pred CCHHHHHHHHHhccchHHHHHHH---HhCCCCHH----HHHHHHHHHHHHHHHHHHHhchhhh-ccCceeCCHHHHHHcC
Confidence 46777776665555555555443 34444443 4467899999999999888874331 12211
Q ss_pred -cchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCC
Q 038854 295 -AGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQE 336 (353)
Q Consensus 295 -~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~~~~~ 336 (353)
.-+|+..++.|-.+.-.++.-.+.++.+.++|...+..+|..
T Consensus 195 v~~~dl~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~ 237 (294)
T 4hd1_A 195 ATLDDIRARRATDGVRRCIALEVDRAQALFDEGRRLESLVPPR 237 (294)
T ss_dssp CCHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSSCHH
T ss_pred CCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 012344444433222234455566778888888888888753
No 47
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=93.02 E-value=0.61 Score=44.61 Aligned_cols=109 Identities=14% Similarity=-0.004 Sum_probs=66.0
Q ss_pred CChhHHHHHHHhcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCC-----------
Q 038854 226 LGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKT----------- 294 (353)
Q Consensus 226 ~~~~~~~~i~~~KTg~L~~~~~~lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~----------- 294 (353)
.+.++++..+.+-.|....+++.+-..-...++ ........+.++|.|+|+.|=+.|+-.|-.. |.-
T Consensus 136 ~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~~-~~~~~~~~A~~lG~AlQltNilRDv~eD~~~-gR~YlP~e~l~~~g 213 (343)
T 3vj8_A 136 TSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDP-LVGEDTERANSMGLFLQKTNIIRDYLEDQQG-GREFWPQEVWSRYV 213 (343)
T ss_dssp CSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSCH-HHHHCHHHHHHHHHHHHHHHHHHTHHHHHHT-TCCCSCHHHHTTTC
T ss_pred CCHHHHHHHHHhCcHHHHHHHHHHhCCCCCccc-hhhhHHHHHHHHHHHHHHHHHHHHhHHHHhC-CCeeCCHHHHHHcC
Confidence 467788777766667777776665444322222 2345678899999999999988887322111 111
Q ss_pred -cchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCC
Q 038854 295 -AGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQE 336 (353)
Q Consensus 295 -~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~~~~~ 336 (353)
.-+|+..++.+-...-.+..-...++.+.++|...+..+|+.
T Consensus 214 ~~~~dl~~~~~~~~~~~~l~~l~~~A~~~~~~a~~~~~~L~~~ 256 (343)
T 3vj8_A 214 KKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQ 256 (343)
T ss_dssp SSGGGGGSGGGHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCH
T ss_pred CCHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 012333333333322244555667778888888888888754
No 48
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=91.21 E-value=1.2 Score=41.47 Aligned_cols=95 Identities=19% Similarity=0.165 Sum_probs=62.9
Q ss_pred CChhHHHHHHHhcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCc
Q 038854 226 LGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLT 305 (353)
Q Consensus 226 ~~~~~~~~i~~~KTg~L~~~~~~lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T 305 (353)
.+.++++..+.+-.|....+++.+ ++..+. ......+.++|.|+|+.|=+.|+ +.|...|++-
T Consensus 127 ~t~~dL~~Yc~~vAg~VG~l~~~l---~g~~~~---~~~~~~A~~lG~AlQltNilRDv-----------~eD~~~gR~Y 189 (293)
T 3acx_A 127 ETDAELFGYCYGVAGTVGEVLTPI---LSDHET---HQTYDVARRLGESLQLINILRDV-----------GEDFENERIY 189 (293)
T ss_dssp SSHHHHHHHHHHHTHHHHHHHHHH---HCSSCC---HHHHHHHHHHHHHHHHHHHHHCH-----------HHHHHTTCCC
T ss_pred CCHHHHHHHHHHhhHHHHHHHHHH---hCCCCc---HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHhCCcEE
Confidence 367787777766666666665543 333331 23567999999999999977787 4566666666
Q ss_pred HHHH----------------------HhHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 038854 306 YPKL----------------------LGIEESKKLADKLNKDAQQQLSEFDQEK 337 (353)
Q Consensus 306 ~p~l----------------------~~le~a~~~~~~~~~~A~~~L~~~~~~~ 337 (353)
+|.= -.+..-.+.++.+..+|...+..+|...
T Consensus 190 LP~d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~a~~~~~~lp~~~ 243 (293)
T 3acx_A 190 FSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVFSIEA 243 (293)
T ss_dssp SCHHHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTGGGSCTTH
T ss_pred eCHHHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHHH
Confidence 6641 1233445567788888888888887643
No 49
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=87.12 E-value=3 Score=38.83 Aligned_cols=67 Identities=13% Similarity=0.133 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHHhcCCC
Q 038854 257 TDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQ 335 (353)
Q Consensus 257 ~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~~~~ 335 (353)
+.+....+...-+.|=.+.-|.||+.| .+|++.|++|+-..+|...|.-....+...|.+.+..+++
T Consensus 66 ~~~~~~~~A~aiEliH~aSLIHDDImD------------~s~~RRG~Pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~ 132 (285)
T 4fp4_A 66 MDPRILEAAAIVELLHVVSLLQDDVMD------------QHDQRRGIKTPRAMYGDGRAIVASDWLIAESIKMAVNLGA 132 (285)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHT------------TCSBSSSSBCHHHHHCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHCCCCC------------CCCCCCCCCcHHHhcChHHHHHHHHHHHHHHHHHHHHhhH
Confidence 444555666677788889999999987 4788999999999999888887788888889888887653
No 50
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=86.35 E-value=2.9 Score=39.86 Aligned_cols=74 Identities=19% Similarity=0.060 Sum_probs=51.4
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHH
Q 038854 249 LGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQ 328 (353)
Q Consensus 249 lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~ 328 (353)
+++.+.|.+.+....+...-+.|=.+.-|.||+.| .+|++.|++|+-..+|...|.-....+...|.+
T Consensus 63 ~~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ 130 (341)
T 3mzv_A 63 AAARLVGYGGPFHVHLAATVEFIHTATLLHDDVVD------------ESRQRRGRPTANLLWDNKSSVLVGDYLFARSFQ 130 (341)
T ss_dssp HHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHHC------------------CTTSCCHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCccC------------CCCCcCCCccHHHhcChHHHHHHHHHHHHHHHH
Confidence 34444455555556677777888889999999987 478889999999998887777777777788888
Q ss_pred HHhcCC
Q 038854 329 QLSEFD 334 (353)
Q Consensus 329 ~L~~~~ 334 (353)
.+...+
T Consensus 131 ~l~~~~ 136 (341)
T 3mzv_A 131 LMTDTG 136 (341)
T ss_dssp HHGGGC
T ss_pred HHHhCC
Confidence 777653
No 51
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=85.74 E-value=3.7 Score=38.97 Aligned_cols=67 Identities=13% Similarity=0.057 Sum_probs=44.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHHhcC
Q 038854 255 GGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEF 333 (353)
Q Consensus 255 g~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~~ 333 (353)
|.+.+....+...-+.|=.++-|.||+.| .+|++.|++|+-..+|...|.-....+...|.+.+...
T Consensus 63 g~~~~~~~~~A~aiEliH~asLiHDDI~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~ 129 (334)
T 3rmg_A 63 GAVTPATLHAAVSLELLHTASLVHDDVVD------------ESTERRGQLSVNAIFNNKVSVLAGDYLLATSLVHAEQT 129 (334)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHC---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHcCccC------------CCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhC
Confidence 44555555666777888899999999987 47889999999999988777666667777777777654
No 52
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=85.18 E-value=2.9 Score=40.05 Aligned_cols=76 Identities=21% Similarity=0.163 Sum_probs=58.7
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHH
Q 038854 248 VLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQ 327 (353)
Q Consensus 248 ~lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~ 327 (353)
.+++.+.|.+.+....+...-+.|=.+.-|.||++| .+|++.|++|+-..+|...|.-...-+...|.
T Consensus 63 ll~~~~~g~~~~~~~~~A~avEliH~asLiHDDI~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~ 130 (352)
T 3nf2_A 63 VLSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLMD------------GDEQRRHRDTVWKVHGPAQAILVGDALFALAN 130 (352)
T ss_dssp HHHHHTTTCCGGGGHHHHHHHHHHHHHHHHHHHHHH------------TCCEETTEECHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCC------------CCCCCCCCccHHHhcChHHHHHHHHHHHHHHH
Confidence 344455566666556677777788889999999988 36788999999999988888777778888888
Q ss_pred HHHhcCCC
Q 038854 328 QQLSEFDQ 335 (353)
Q Consensus 328 ~~L~~~~~ 335 (353)
+.|...+.
T Consensus 131 ~~l~~~~~ 138 (352)
T 3nf2_A 131 EVLLELGT 138 (352)
T ss_dssp HHHHTTCS
T ss_pred HHHHhCCC
Confidence 88887653
No 53
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=84.61 E-value=7.6 Score=36.18 Aligned_cols=69 Identities=13% Similarity=0.120 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHHhcCC
Q 038854 255 GGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFD 334 (353)
Q Consensus 255 g~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~~~ 334 (353)
|.+.+....+...-+.|=.+.-|.||++| .+|++.|++|+-..+|...|.-....+...|.+.+...+
T Consensus 41 ~~~~~~~~~~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~l~~~a~~~l~~~~ 108 (301)
T 2q80_A 41 KVPEDKLQIIIEVTEMLHNASLLIDDIED------------NSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLD 108 (301)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHH------------TCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHccccC------------CCCCCCCCcchhhccCcHHHHHHHHHHHHHHHHHHHHCC
Confidence 44555555666777778888899999987 467889999999999888887777778888888887764
Q ss_pred C
Q 038854 335 Q 335 (353)
Q Consensus 335 ~ 335 (353)
.
T Consensus 109 ~ 109 (301)
T 2q80_A 109 H 109 (301)
T ss_dssp C
T ss_pred C
Confidence 3
No 54
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=83.15 E-value=7.2 Score=36.36 Aligned_cols=74 Identities=18% Similarity=0.045 Sum_probs=58.6
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhh--hhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHH
Q 038854 249 LGAILGGGTDNEVEKLRTFARCIGLLFQVVDDI--LDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDA 326 (353)
Q Consensus 249 lga~lag~~~~~~~~l~~~g~~lG~afQI~DDi--ld~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A 326 (353)
+.+.+.|.+.+....+...-+.|=.+.-|.||+ +| .+|++.|++|+-..+|...|.-....+...|
T Consensus 51 ~~~~~~g~~~~~~~~~A~avEliH~asLIHDDip~mD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a 118 (297)
T 3m0g_A 51 ESAAIHGISMAQAMPAALAVEALHAYSLVHDDMPCMD------------NDDLRRGLPTVHKKWDDATAVLAGDALQTLA 118 (297)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT------------CCSEETTEECHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhcCccccC------------CCCccCCCCCchhhcChHHHHHHHHHHHHHH
Confidence 334445667776667777778888899999999 66 4788999999999999888887778888888
Q ss_pred HHHHhcCC
Q 038854 327 QQQLSEFD 334 (353)
Q Consensus 327 ~~~L~~~~ 334 (353)
.+.+....
T Consensus 119 ~~~l~~~~ 126 (297)
T 3m0g_A 119 FELCTDPV 126 (297)
T ss_dssp HHHTTCGG
T ss_pred HHHHHHhc
Confidence 88887653
No 55
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=81.95 E-value=8.9 Score=36.12 Aligned_cols=68 Identities=19% Similarity=0.131 Sum_probs=48.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhh--hhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHHhc
Q 038854 255 GGTDNEVEKLRTFARCIGLLFQVVDDI--LDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSE 332 (353)
Q Consensus 255 g~~~~~~~~l~~~g~~lG~afQI~DDi--ld~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~ 332 (353)
|.+.+....+...-+.|=.+.-|.||+ +| .+|++.|++|.-..+|...|.-.-..+...|.+.|..
T Consensus 61 g~~~~~~~~~A~avEliH~aSLIHDDip~mD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~ 128 (317)
T 4f62_A 61 GDISSLTDASAAALESIHAYSLIHDDLPAMD------------NDELRRGKPTCHIQFDEATAILAGDALQTFAFELLSN 128 (317)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHSTTSC------------C-------CCHHHHSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCccccc------------CCCCcCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 445555566667777888899999999 66 4788999999999999888877777888889998887
Q ss_pred CC
Q 038854 333 FD 334 (353)
Q Consensus 333 ~~ 334 (353)
.+
T Consensus 129 ~~ 130 (317)
T 4f62_A 129 PT 130 (317)
T ss_dssp TT
T ss_pred cc
Confidence 63
No 56
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=81.10 E-value=8.6 Score=35.57 Aligned_cols=68 Identities=16% Similarity=0.136 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhh--hhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHHhc
Q 038854 255 GGTDNEVEKLRTFARCIGLLFQVVDDI--LDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSE 332 (353)
Q Consensus 255 g~~~~~~~~l~~~g~~lG~afQI~DDi--ld~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~ 332 (353)
|.+++....+...-+.|=.+.-|.||+ +| .+|++.|++|+-..+|...|.-...-+...|.+.+..
T Consensus 62 g~~~~~~~~~A~avEliH~asLIHDDIP~~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~ 129 (284)
T 2ftz_A 62 GVEEEXLLDVAVAVELFHTASLIHDDLPPID------------NADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISX 129 (284)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHSTTTT------------CCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHhCCchhcC------------CCCCCCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555666677777888899999 88 4688999999999999888887778888888888887
Q ss_pred CC
Q 038854 333 FD 334 (353)
Q Consensus 333 ~~ 334 (353)
.+
T Consensus 130 ~~ 131 (284)
T 2ftz_A 130 IG 131 (284)
T ss_dssp TC
T ss_pred CC
Confidence 64
No 57
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=80.65 E-value=5.6 Score=37.47 Aligned_cols=73 Identities=14% Similarity=0.170 Sum_probs=54.1
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHH
Q 038854 249 LGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQ 328 (353)
Q Consensus 249 lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~ 328 (353)
+++.+.|.+.+....+...-+.|=.+.-|.||+.| .+|++.|++|+-..+|...|.-...-+...|.+
T Consensus 54 ~~~~~~g~~~~~~~~~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ 121 (325)
T 3aqb_B 54 LSGFLNDTQKDDLIRTAVSLELVHMASLVHDDYID------------NSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQ 121 (325)
T ss_dssp HHHTTSSCCCHHHHHHHHHHHHHHHHHHHHHHHHH------------TCCEETTEECHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHHHHhCcccc------------CCCCCCCCCCcccccChHHHHHHHHHHHHHHHH
Confidence 34444444444445566666777788899999988 467889999999999888887777778888888
Q ss_pred HHhcC
Q 038854 329 QLSEF 333 (353)
Q Consensus 329 ~L~~~ 333 (353)
.+...
T Consensus 122 ~l~~~ 126 (325)
T 3aqb_B 122 NIATI 126 (325)
T ss_dssp HTTTC
T ss_pred HHHhC
Confidence 87765
No 58
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=80.64 E-value=5.2 Score=38.43 Aligned_cols=74 Identities=16% Similarity=0.095 Sum_probs=43.5
Q ss_pred HHHHhCC-CCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHH
Q 038854 249 LGAILGG-GTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQ 327 (353)
Q Consensus 249 lga~lag-~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~ 327 (353)
+++.+.| .+.+.+..+...-+.|=.+.-|.||++| .+|++.|++|+-..+|...|.-....+...|.
T Consensus 84 l~~~~~~~~~~~~~~~~A~avEliH~asLIHDDImD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~ 151 (360)
T 3lmd_A 84 LASEFGEKPLSENVIKAAVVVEITHLATLYHDDVMD------------EASMRRGVPSANARWDNSVAILAGDILLAHAS 151 (360)
T ss_dssp HHHTTSSSTTCHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHHHHHhCCCcC------------CCCCCCCCCcHHhhcChHHHHHHHHHHHHHHH
Confidence 3444555 4555555666677778889999999987 36788899999888877766666666666666
Q ss_pred HHHhcCC
Q 038854 328 QQLSEFD 334 (353)
Q Consensus 328 ~~L~~~~ 334 (353)
+.+..++
T Consensus 152 ~~l~~~~ 158 (360)
T 3lmd_A 152 GLMSQLG 158 (360)
T ss_dssp HHHHHHC
T ss_pred HHHHHCC
Confidence 6666554
No 59
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=80.18 E-value=10 Score=35.93 Aligned_cols=69 Identities=16% Similarity=0.175 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHHhcCC
Q 038854 255 GGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFD 334 (353)
Q Consensus 255 g~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~~~ 334 (353)
|.+.+....+...-+.|=.+.=|.||++| .+|++.|++|+-..+|...|.-....+...|.+.+...+
T Consensus 56 ~~~~~~~~~~A~avEliH~asLiHDDI~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~ 123 (340)
T 2e8v_A 56 NLPKDQLAIVSQIVELLHNSSLLIDDIED------------NAPLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLT 123 (340)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHT------------TCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHGGGGC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCcccc------------CCCCCCCCcchhhccCchHHHHHHHHHHHHHHHHHHHcC
Confidence 45555555566666777778889999987 468899999999999888887777888888888888764
Q ss_pred C
Q 038854 335 Q 335 (353)
Q Consensus 335 ~ 335 (353)
.
T Consensus 124 ~ 124 (340)
T 2e8v_A 124 T 124 (340)
T ss_dssp C
T ss_pred C
Confidence 3
No 60
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=80.04 E-value=9.9 Score=35.96 Aligned_cols=71 Identities=13% Similarity=0.055 Sum_probs=55.1
Q ss_pred HhCC-CCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHH
Q 038854 252 ILGG-GTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQL 330 (353)
Q Consensus 252 ~lag-~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L 330 (353)
.+++ .+.+....+...-+.|=.+.=|.||++| .+|++.|++|+-..+|...|.-...-+...|.+.+
T Consensus 68 ~~g~~~~~~~~~~~A~aiEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l 135 (334)
T 3pko_A 68 TFGNAATPAQLQAGAAAIEILHVGTLIHDDVID------------DSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQV 135 (334)
T ss_dssp TTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH------------TCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHhCccCC------------CCCCcCCCccHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 3444 4666666777777888899999999988 46889999999999988877777777777777777
Q ss_pred hcCC
Q 038854 331 SEFD 334 (353)
Q Consensus 331 ~~~~ 334 (353)
....
T Consensus 136 ~~~~ 139 (334)
T 3pko_A 136 LKST 139 (334)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 6653
No 61
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=79.48 E-value=8.3 Score=35.77 Aligned_cols=73 Identities=11% Similarity=-0.017 Sum_probs=53.0
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHH
Q 038854 250 GAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQ 329 (353)
Q Consensus 250 ga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~ 329 (353)
++.+.|.+++....+...-+.|=.+.=|.||++| .+|++.|++|.-..+|...|.-...-+...|.+.
T Consensus 60 ~~~~~g~~~~~~~~~A~avEliH~asLIHDDi~D------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~ 127 (289)
T 2azj_A 60 FTVALGGDIKDSYGGALAIEILHSASLALCDIVD------------LDATRRGDKAAWVVYGNRKVIFITNYLIPTALRI 127 (289)
T ss_dssp HHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHT------------TCCBSSSSBCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhCCCCC------------CCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHH
Confidence 3334445544445566666777788889999977 4688899999999998887777777777777777
Q ss_pred H-hcCC
Q 038854 330 L-SEFD 334 (353)
Q Consensus 330 L-~~~~ 334 (353)
+ ...+
T Consensus 128 l~~~~~ 133 (289)
T 2azj_A 128 IQTSYG 133 (289)
T ss_dssp HHHHHC
T ss_pred HHhcCc
Confidence 7 6553
No 62
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=79.05 E-value=7.5 Score=36.80 Aligned_cols=70 Identities=20% Similarity=0.105 Sum_probs=54.0
Q ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 038854 252 ILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLS 331 (353)
Q Consensus 252 ~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~ 331 (353)
.+.|.+++....+...-+.|=.+.-|.||++| .+|++.|++|+-..+|...|.-...-+...|.+.+.
T Consensus 59 ~~~g~~~~~~~~~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~ 126 (342)
T 1wy0_A 59 EAVGGDPLRAIYPAVAIELIHNYSLVHDDIMD------------MDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVA 126 (342)
T ss_dssp TTTTSCGGGGHHHHHHHHHHHHHHHHHHHHHH------------TCCCSTTSCCHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHCCccc------------CCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHH
Confidence 33344544445566666777788899999988 468899999999999988888777788888888887
Q ss_pred cC
Q 038854 332 EF 333 (353)
Q Consensus 332 ~~ 333 (353)
..
T Consensus 127 ~~ 128 (342)
T 1wy0_A 127 RA 128 (342)
T ss_dssp TC
T ss_pred Hc
Confidence 75
No 63
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=78.76 E-value=12 Score=35.32 Aligned_cols=73 Identities=18% Similarity=0.109 Sum_probs=52.7
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHH
Q 038854 249 LGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQ 328 (353)
Q Consensus 249 lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~ 328 (353)
+++.+.|.+.+....+...-+.|=.+.=|.||++| .+|++.|++|+-..+|...|.-...-+...|.+
T Consensus 49 ~~~~~~~~~~~~~~~~A~avEliH~asLihDDi~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ 116 (330)
T 1wmw_A 49 YSALAHGAPLEAGLEAATALELFQNWVLVHDDIED------------GSEERRGRPALHRLHPMPLALNAGDAMHAEMWG 116 (330)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH------------TCCEETTEECHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHccccc------------CCCCCCCCCccccccCchHHHHHHHHHHHHHHH
Confidence 33344455666555666777778888999999987 467889999998888877776666666777776
Q ss_pred HHhcC
Q 038854 329 QLSEF 333 (353)
Q Consensus 329 ~L~~~ 333 (353)
.+...
T Consensus 117 ~l~~~ 121 (330)
T 1wmw_A 117 LLAEG 121 (330)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66543
No 64
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=78.62 E-value=7 Score=36.41 Aligned_cols=65 Identities=17% Similarity=0.148 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHHhcC
Q 038854 257 TDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEF 333 (353)
Q Consensus 257 ~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~~ 333 (353)
+.+....+...-+.|=.+.=|.||++| .+|++.|++|+-..+|...|.-...-+...|.+.+...
T Consensus 59 ~~~~~~~~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~ 123 (299)
T 1v4e_A 59 IGEDAISSLAALELVHLASLLHDDVID------------GARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEI 123 (299)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH------------TCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHhhCCCCC------------CCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhC
Confidence 334444556666677778889999988 46888999999988887777666666777777777655
No 65
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=78.38 E-value=19 Score=33.34 Aligned_cols=73 Identities=22% Similarity=0.201 Sum_probs=55.1
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhh--hhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHH
Q 038854 249 LGAILGGGTDNEVEKLRTFARCIGLLFQVVDDI--LDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDA 326 (353)
Q Consensus 249 lga~lag~~~~~~~~l~~~g~~lG~afQI~DDi--ld~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A 326 (353)
+++.+.|.+.+....+...-+.|=.+.=|.||+ +| .+|++.|++|+-..+|...|.-.-.-+...|
T Consensus 54 ~~~~~~g~~~~~~~~~A~avEliH~asLiHDDiP~~D------------~s~~RRG~pt~h~~~G~~~Ail~GD~L~~~a 121 (299)
T 1rqj_A 54 ATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMD------------DDDLRRGLPTCHVKFGEANAILAGDALQTLA 121 (299)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT------------CCCEETTEECHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHhHHHhCCChhhc------------CCCCCCCCCChhhhcChHHHHHHHHHHHHHH
Confidence 334444556665555666667777788899999 88 4688999999999999888777777788888
Q ss_pred HHHHhcC
Q 038854 327 QQQLSEF 333 (353)
Q Consensus 327 ~~~L~~~ 333 (353)
.+.+...
T Consensus 122 ~~~l~~~ 128 (299)
T 1rqj_A 122 FSILSDA 128 (299)
T ss_dssp HHHHHHS
T ss_pred HHHHHHh
Confidence 8888764
No 66
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=78.35 E-value=5.4 Score=38.23 Aligned_cols=63 Identities=14% Similarity=0.051 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 038854 257 TDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLS 331 (353)
Q Consensus 257 ~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~ 331 (353)
+.+....+...-+.|=.+.-|.||+.| .+|++.|++|+-..+|...|.-...-+...|.+.+.
T Consensus 63 ~~~~~~~~A~aiEliH~asLiHDDI~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~ 125 (358)
T 4dhd_A 63 QWRPALPAAAIVELIHNYSLIYDDIID------------RGDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAVL 125 (358)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHHHHT------------TCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCcccc------------CCCCcCCCccHHHhcCHHHHHHHHHHHHHHHHHHHh
Confidence 444445566667778889999999987 468899999999999988888777888888888874
No 67
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=77.68 E-value=20 Score=32.50 Aligned_cols=100 Identities=15% Similarity=0.149 Sum_probs=58.8
Q ss_pred cCChhHHHHHHHhcHHHHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhh-cC
Q 038854 225 DLGIEHLEFIHEHKTAALLEAAV-VLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLV-AD 302 (353)
Q Consensus 225 ~~~~~~~~~i~~~KTg~L~~~~~-~lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~-~g 302 (353)
.++.++|..+.+.-.|..+.... ..+. --..+++..+.+.++-+..+...-+.||+..+..+.++ |+ +.. +|
T Consensus 151 ~Ps~eeYl~~r~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~l~~~~~~~~~l~NDl~S~~kE~~~-g~----~~h~~~ 224 (300)
T 1di1_A 151 IHELGHYLEYREKDVGKALLSALMRFSM-GLRLSADELQDMKALEANCAKQLSVVNDIYSYDKEEEA-SR----TGHKEG 224 (300)
T ss_dssp CCSHHHHHHHHHTCHHHHHHHHHHHHHH-TCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTCCC-------------
T ss_pred CCCHHHHHHHHhhhccHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-hc----cccccc
Confidence 35789998886656665433322 2222 11246777777888999999999999999999643221 11 100 01
Q ss_pred --CCcHHHHH------hHHHHHHHHHHHHHHHHHHH
Q 038854 303 --KLTYPKLL------GIEESKKLADKLNKDAQQQL 330 (353)
Q Consensus 303 --k~T~p~l~------~le~a~~~~~~~~~~A~~~L 330 (353)
..+...++ ..|.|.+.+.++++++.+.+
T Consensus 225 ~~~~n~V~~~m~~~g~s~eeA~~~~~~~i~~~~~~~ 260 (300)
T 1di1_A 225 AFLCSAVKVLAEESKLGIPATKRVLWSMTREWETVH 260 (300)
T ss_dssp --CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 23444444 46677777766666655443
No 68
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=76.65 E-value=12 Score=34.95 Aligned_cols=74 Identities=20% Similarity=0.110 Sum_probs=57.5
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhh--hhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHH
Q 038854 249 LGAILGGGTDNEVEKLRTFARCIGLLFQVVDDI--LDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDA 326 (353)
Q Consensus 249 lga~lag~~~~~~~~l~~~g~~lG~afQI~DDi--ld~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A 326 (353)
+.+.+.|.+.+....+...-+.|=.+.=|.||+ +| .+|++.|++|+-..+|...|.-....+...|
T Consensus 54 ~~~~~~g~~~~~~~~~A~aiEliH~asLIHDDip~mD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a 121 (304)
T 3lsn_A 54 AACEALGGKPEQANGAACAVELIHAYSLVHDDLPAMD------------DDDLRRGQPTTHKAFDEACAILAGDGLQSLA 121 (304)
T ss_dssp HHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHTSTTTT------------CCSEETTEECHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCccccc------------CCCccCCCCchHhhcCHHHHHHHHHHHHHHH
Confidence 334444556665566666777788899999999 67 4788999999999999888877778888899
Q ss_pred HHHHhcCC
Q 038854 327 QQQLSEFD 334 (353)
Q Consensus 327 ~~~L~~~~ 334 (353)
.+.|...+
T Consensus 122 ~~~l~~~~ 129 (304)
T 3lsn_A 122 FSALLDPA 129 (304)
T ss_dssp HHHHHCTT
T ss_pred HHHHHHhc
Confidence 99888764
No 69
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=76.33 E-value=4.1 Score=38.88 Aligned_cols=73 Identities=25% Similarity=0.266 Sum_probs=42.7
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHH
Q 038854 249 LGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQ 328 (353)
Q Consensus 249 lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~ 328 (353)
+++.+.|.+.+....+...-+.|=.+.-|.||+.| .+|++.|++|.-..+|...|.-.-..+...|.+
T Consensus 75 l~~~~~g~~~~~~~~~A~aiEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~ 142 (345)
T 3oyr_A 75 AAARLAGADNDHFQKLAAAVEFIHTATLLHDDVVD------------GSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFE 142 (345)
T ss_dssp HHHHHTTCCSSTHHHHHHHHHHHHHHHHHTTTTC---------------------CCCSCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCcccC------------CCCCCCCCccHHHhhCHHHHHHHHHHHHHHHHH
Confidence 34444455555555667777888889999999987 356777887776666666555555556666666
Q ss_pred HHhcC
Q 038854 329 QLSEF 333 (353)
Q Consensus 329 ~L~~~ 333 (353)
.+...
T Consensus 143 ~l~~~ 147 (345)
T 3oyr_A 143 LMVET 147 (345)
T ss_dssp HHHTT
T ss_pred HHHhC
Confidence 66554
No 70
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=75.93 E-value=7.1 Score=36.68 Aligned_cols=62 Identities=21% Similarity=0.224 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh--hhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHHhc
Q 038854 259 NEVEKLRTFARCIGLLFQVVDDI--LDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSE 332 (353)
Q Consensus 259 ~~~~~l~~~g~~lG~afQI~DDi--ld~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~ 332 (353)
+....+...-+.|=.+.-|.||+ +| .+|++.|++|+-..+|...|.-.-+.+...|.+.|..
T Consensus 74 ~~~~~~A~aiEliH~aSLIHDDIp~mD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~ 137 (311)
T 3llw_A 74 TEYFKIALSIECLHTYSLIHDDLPCMD------------NAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSN 137 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTTT------------CCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCccccC------------CCcccCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555666777788999999 77 4788999999999988877776667777788887776
No 71
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=75.54 E-value=12 Score=35.12 Aligned_cols=68 Identities=21% Similarity=0.057 Sum_probs=53.5
Q ss_pred CCCHHHH--HHHHHHHHHHHHHHHhhhhh--hhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHH
Q 038854 255 GGTDNEV--EKLRTFARCIGLLFQVVDDI--LDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQL 330 (353)
Q Consensus 255 g~~~~~~--~~l~~~g~~lG~afQI~DDi--ld~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L 330 (353)
|.+.+.. ..+...-+.|=.+.-|.||+ +| .+|++.|++|+-..+|...|.-....+...|.+.|
T Consensus 64 g~~~~~~~~~~~A~aiEliH~aSLIHDDiP~mD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l 131 (309)
T 3pde_A 64 GVTFVPERHWRPVMALELLHTYSLIHDDLPAMD------------NDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWL 131 (309)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHHHHHHSTTTT------------CCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHhHhHHHHHHHHHHHHHHHHCCchhcc------------CCCCCCCCcchhhhcChHHHHHHHHHHHHHHHHHH
Confidence 4444444 45666667778889999999 88 47889999999999998888877788888898888
Q ss_pred hcCC
Q 038854 331 SEFD 334 (353)
Q Consensus 331 ~~~~ 334 (353)
...+
T Consensus 132 ~~~~ 135 (309)
T 3pde_A 132 TATD 135 (309)
T ss_dssp TSSS
T ss_pred HhcC
Confidence 8653
No 72
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=75.23 E-value=11 Score=35.61 Aligned_cols=70 Identities=20% Similarity=0.119 Sum_probs=55.4
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHhhhhh--hhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHH
Q 038854 253 LGGGTDNEVEKLRTFARCIGLLFQVVDDI--LDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQL 330 (353)
Q Consensus 253 lag~~~~~~~~l~~~g~~lG~afQI~DDi--ld~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L 330 (353)
+.|.+.+....+...-+.|=.+.-|.||+ +| .+|++.|++|.-..+|...|.-....+...|.+.|
T Consensus 64 ~~g~~~~~~~~~A~avEliH~aSLIHDDip~mD------------~~~~RRG~pt~h~~~G~~~AIlaGD~L~~~Af~~l 131 (324)
T 3ts7_A 64 TIGVAADLLDGPACAVEFIHVYSLIHDDLPAMD------------DDDLRRGKPTCHKAYDEATAILAGDGLQALAFHVL 131 (324)
T ss_dssp HHTCCGGGTHHHHHHHHHHHHHHHHHHTSTTTT------------CCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHhhcCccccc------------CCCccCCCCchhhhcChHHHHHHHHHHHHHHHHHH
Confidence 33455555566666777888899999999 77 47889999999999998888877788888888888
Q ss_pred hcCC
Q 038854 331 SEFD 334 (353)
Q Consensus 331 ~~~~ 334 (353)
...+
T Consensus 132 ~~~~ 135 (324)
T 3ts7_A 132 AQDP 135 (324)
T ss_dssp HHCT
T ss_pred Hhcc
Confidence 8763
No 73
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=74.88 E-value=16 Score=34.03 Aligned_cols=62 Identities=26% Similarity=0.183 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh--hhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHHhcC
Q 038854 260 EVEKLRTFARCIGLLFQVVDDI--LDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEF 333 (353)
Q Consensus 260 ~~~~l~~~g~~lG~afQI~DDi--ld~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~~ 333 (353)
....+...-+.|=.+.-|.||+ +| .+|++.|++|+-..+|...|.-....+...|.+.+...
T Consensus 72 ~~~~~A~avEliH~asLIHDDIP~mD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~ 135 (302)
T 3p8l_A 72 QDYQVAASLEMIHTYSLIHDDLPAMD------------DDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLSLS 135 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTTT------------CCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHCCchhcc------------CCCccCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666777888899999999 88 47889999999999998888777778888888888764
No 74
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=74.75 E-value=59 Score=30.85 Aligned_cols=95 Identities=14% Similarity=0.015 Sum_probs=54.7
Q ss_pred cCChhHHHHHHHhcHHHHHHH-HHHHHHHhCCCCHHHHH--HHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhc
Q 038854 225 DLGIEHLEFIHEHKTAALLEA-AVVLGAILGGGTDNEVE--KLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVA 301 (353)
Q Consensus 225 ~~~~~~~~~i~~~KTg~L~~~-~~~lga~lag~~~~~~~--~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~ 301 (353)
.++.++|..+.+.-.|..+.. .+..+.- -..+++..+ .+.++-+..+...-+.||+..+..+.+ +
T Consensus 205 vPs~eEYl~~r~~s~g~~~~~~l~~~~~g-~~l~~~~~~~p~~~~l~~~~~~i~rL~NDi~S~~kE~~-----------~ 272 (382)
T 3kb9_A 205 VPGVEEYLELRRLTFAHWIWTDLLEPSSG-CELPDAVRKHPAYRRAALLSQEFAAWYNDLCSLPKEIA-----------G 272 (382)
T ss_dssp CCCHHHHHHHHHHHTTHHHHHHHHHHHHT-CCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------T
T ss_pred CCCHHHHHHHHhhhcCHHHHHHHHHHHcC-CCCCHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------c
Confidence 468899988865444543322 2222221 123444432 466778888889999999999864322 2
Q ss_pred CC-CcHHHHH------hHHHHHHHHHHHHHHHHHHHh
Q 038854 302 DK-LTYPKLL------GIEESKKLADKLNKDAQQQLS 331 (353)
Q Consensus 302 gk-~T~p~l~------~le~a~~~~~~~~~~A~~~L~ 331 (353)
|. .++..++ ..|.|.+.+.++++++.+.+.
T Consensus 273 G~~~N~V~~~m~~~g~s~eeA~~~v~~~i~~~~k~~~ 309 (382)
T 3kb9_A 273 DEVHNLGISLITHHSLTLEEAIGEVRRRVEECITEFL 309 (382)
T ss_dssp TCCCSHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33 2444443 456777666666665555443
No 75
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=74.64 E-value=13 Score=35.32 Aligned_cols=72 Identities=19% Similarity=0.172 Sum_probs=55.0
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhh--hhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHH
Q 038854 250 GAILGGGTDNEVEKLRTFARCIGLLFQVVDDI--LDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQ 327 (353)
Q Consensus 250 ga~lag~~~~~~~~l~~~g~~lG~afQI~DDi--ld~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~ 327 (353)
++.+.|.+++....+...-+.|=.+.-|.||+ +| ..|++.|++|.-..+|...|.-.-+-+...|.
T Consensus 96 ~~~~~g~~~~~~~~~A~aiEliH~asLIHDDiPamD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~ 163 (335)
T 2h8o_A 96 SVALLGGDAEAGLHVGAALECLHCYSLVHDDLPAMD------------DDDLRRGQPTVHRKFDEATAILAGDSLLTLAF 163 (335)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT------------CCSEETTEECHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCchhcc------------CCCcCCCCCcHhhhcChHHHHHHHHHHHHHHH
Confidence 33444556655555666667777788899999 88 46889999999999988888777778888888
Q ss_pred HHHhcC
Q 038854 328 QQLSEF 333 (353)
Q Consensus 328 ~~L~~~ 333 (353)
+.+...
T Consensus 164 ~~l~~~ 169 (335)
T 2h8o_A 164 DIIASD 169 (335)
T ss_dssp HHHHST
T ss_pred HHHHHh
Confidence 888765
No 76
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=74.16 E-value=17 Score=33.77 Aligned_cols=69 Identities=22% Similarity=0.069 Sum_probs=52.4
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHhhhhh--hhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHH
Q 038854 253 LGGGTDNEVEKLRTFARCIGLLFQVVDDI--LDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQL 330 (353)
Q Consensus 253 lag~~~~~~~~l~~~g~~lG~afQI~DDi--ld~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L 330 (353)
+.|.+++....+...-+.|=.+.-|.||+ +| .+|++.|++|+-..+|...|.-.-..+...|.+.+
T Consensus 56 ~~g~~~~~~~~~A~avEliH~asLiHDDiP~~D------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l 123 (301)
T 1rtr_A 56 SLNTEYELGMKSAIALEMIHTYSLIHDDLPAMD------------NDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELI 123 (301)
T ss_dssp HTTSCGGGGHHHHHHHHHHHHHHHHHHHSTTTT------------CCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHhCCchhcc------------CCCccCCCccHHhhcCHHHHHHHHHHHHHHHHHHH
Confidence 33444444344566666777788899999 77 47889999999999998888777778888888888
Q ss_pred hcC
Q 038854 331 SEF 333 (353)
Q Consensus 331 ~~~ 333 (353)
...
T Consensus 124 ~~~ 126 (301)
T 1rtr_A 124 SSD 126 (301)
T ss_dssp HTC
T ss_pred HHh
Confidence 765
No 77
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=73.96 E-value=24 Score=32.53 Aligned_cols=69 Identities=25% Similarity=0.236 Sum_probs=50.6
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHhhhhh--hhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHH
Q 038854 253 LGGGTDNEVEKLRTFARCIGLLFQVVDDI--LDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQL 330 (353)
Q Consensus 253 lag~~~~~~~~l~~~g~~lG~afQI~DDi--ld~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L 330 (353)
+.|.+++....+...-+.|=.+.-|.||+ +| .+|++.|++|+-..+|...|.-.-+-+...|.+.+
T Consensus 66 ~~g~~~~~~~~~A~avEliH~asLiHDDip~mD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l 133 (293)
T 2j1p_A 66 LVGGEESLAMPAACAVEMIHTMSLIHDDLPCMD------------NDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHL 133 (293)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT------------CCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHCCchhcc------------CCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 34555555455666666777788899998 77 46889999999999988777666667777777777
Q ss_pred hcC
Q 038854 331 SEF 333 (353)
Q Consensus 331 ~~~ 333 (353)
...
T Consensus 134 ~~~ 136 (293)
T 2j1p_A 134 ASA 136 (293)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 78
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=71.81 E-value=38 Score=30.93 Aligned_cols=62 Identities=19% Similarity=0.178 Sum_probs=42.8
Q ss_pred cCChhHHHHHHHhcHHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccc
Q 038854 225 DLGIEHLEFIHEHKTAALLEAA-VVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKS 287 (353)
Q Consensus 225 ~~~~~~~~~i~~~KTg~L~~~~-~~lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~ 287 (353)
.++.++|..+.+.-.|..+..+ +..+. =-..+++..+.+.++-+..+...-+.||+..+..+
T Consensus 165 ~Ps~eeYl~~r~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~l~~~~~~~~~L~NDl~S~~kE 227 (320)
T 3bny_A 165 PMGLGGYLEYRERDVGKELLAALMRFSM-GLKLSPSELQRVREIDANCSKHLSVVNDIYSYEKE 227 (320)
T ss_dssp CCCHHHHHHHHHTCHHHHHHHHHHHHHH-TCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhhhcccHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 4578999988766666543322 22222 11246777777888999999999999999999643
No 79
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=70.24 E-value=14 Score=34.57 Aligned_cols=73 Identities=16% Similarity=0.089 Sum_probs=54.9
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhh--hhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHH
Q 038854 249 LGAILGGGTDNEVEKLRTFARCIGLLFQVVDDI--LDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDA 326 (353)
Q Consensus 249 lga~lag~~~~~~~~l~~~g~~lG~afQI~DDi--ld~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A 326 (353)
+.+.+.|.+.+....+...-+.|=.+.=|.||+ +| ..|++.|++|+-..+|...|.-....+...|
T Consensus 60 ~~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDip~mD------------~~~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a 127 (313)
T 3lom_A 60 LAGDLIDVDQGVLDIIAAALELTHCYSLIHDDLPAMD------------NDDLRRGKPSCHKAFDEATAILVGDGMQALA 127 (313)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHSTTTT------------CCSEETTEECHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhCCccccc------------CCCccCCCCCchhhcChHHHHHHHHHHHHHH
Confidence 344455667776667777778888899999999 67 4688999999999888777766666677777
Q ss_pred HHHHhcC
Q 038854 327 QQQLSEF 333 (353)
Q Consensus 327 ~~~L~~~ 333 (353)
.+.|...
T Consensus 128 ~~~l~~~ 134 (313)
T 3lom_A 128 IEVLLMR 134 (313)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7776654
No 80
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=70.02 E-value=12 Score=35.01 Aligned_cols=75 Identities=20% Similarity=0.188 Sum_probs=44.0
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhh--hhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHH
Q 038854 248 VLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDI--LDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKD 325 (353)
Q Consensus 248 ~lga~lag~~~~~~~~l~~~g~~lG~afQI~DDi--ld~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~ 325 (353)
.+.+.+.|.+.+....+...-+.|=.+.-|.||+ +| .+|++.|++|+-..+|...|.-....+...
T Consensus 59 l~~~~~~g~~~~~~~~~A~aiEliH~asLIHDDIp~mD------------~s~~RRG~pt~h~~~G~~~AIlaGD~L~~~ 126 (302)
T 3p8r_A 59 YITGQMLGCELSDLDTPASAVECIHAYSLIHDDLPAMD------------DDELRRGKPTCHIQFDEATAILTGDALQTL 126 (302)
T ss_dssp HHHHHTTTCCGGGTHHHHHHHHHHHHHHHHHHTCHHHH------------CCC--------------HHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCccccc------------CCCcCCCCcchhhhcCHHHHHHHHHHHHHH
Confidence 3444455666665566667777888899999999 77 468889999998888887777777777788
Q ss_pred HHHHHhcCC
Q 038854 326 AQQQLSEFD 334 (353)
Q Consensus 326 A~~~L~~~~ 334 (353)
|.+.+...+
T Consensus 127 a~~~l~~~~ 135 (302)
T 3p8r_A 127 AFTILAEGD 135 (302)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHhcc
Confidence 888887653
No 81
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=70.02 E-value=4.1 Score=38.00 Aligned_cols=65 Identities=14% Similarity=0.075 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHHhcC
Q 038854 257 TDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEF 333 (353)
Q Consensus 257 ~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~~ 333 (353)
+.+....+...-+.|=.+.-|.||++|= +|++.|++|.-..+|...|.-.-..+...|.+.+...
T Consensus 60 ~~~~~~~~A~avEliH~asLIHDDi~D~------------s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~ll~~~ 124 (295)
T 3ipi_A 60 SYSRSLNAALAVEMMHSASLIHDDLLDQ------------GLVRRNLPSAPEKFGPSGALLCGDYLIAKSIAFISPY 124 (295)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHHHHHH------------HTSCTTSCCCCCSSCHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCcCcCC------------CCCCCCCccHHHhcCccHHHHHHHHHHHHHHHHHHHc
Confidence 3344455666677788899999999873 5677777777666655555444444555555555443
No 82
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=69.26 E-value=81 Score=30.12 Aligned_cols=47 Identities=19% Similarity=0.143 Sum_probs=26.6
Q ss_pred hCCCcchHHHHH---HHHHHHhCCCccccccHHHHHHHHHHHHHHHhCCCCCCCC
Q 038854 105 LAGGKRVRPVLC---LAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDND 156 (353)
Q Consensus 105 ~~gGKr~Rp~L~---ll~~~~~g~~~~~~~~lA~avEliH~asLIHDDI~~iD~s 156 (353)
..+++++.|.+- .++++.+..-....+ ..+=...++..+.||+ .|++
T Consensus 57 ~~~~~~l~~~~~t~~~laar~YP~a~~e~l---~liad~~~~~F~lDD~--~d~~ 106 (374)
T 1yyq_A 57 KVDPKRLQASLQTIVGMVVYSWAKVSKECM---ADLSIHYTYTLVLDDS--KDDP 106 (374)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHSTTSCHHHH---HHHHHHHHHHHHHTTC--CSCS
T ss_pred ccCHHHHHHHHHHHHHHHhhcCCCCCHHHH---HHHHHHHHHHHhhccc--ccCc
Confidence 345577776553 345555533222222 2333566778889999 7764
No 83
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=68.57 E-value=31 Score=31.94 Aligned_cols=64 Identities=22% Similarity=0.146 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh--hhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHHhcC
Q 038854 258 DNEVEKLRTFARCIGLLFQVVDDI--LDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEF 333 (353)
Q Consensus 258 ~~~~~~l~~~g~~lG~afQI~DDi--ld~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~~ 333 (353)
.+....+...-+.|=.+.-|.||+ +| .+|++.|++|+-..+|...|.-....+...|.+.|...
T Consensus 59 ~~~~~~~A~aiEliH~aSLIHDDIp~mD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~ 124 (291)
T 3npk_A 59 LNQALDVALALEFIHTYSLIHDDLPAMD------------NADFRRGIPTLHKSYDETTAILVGDALNTEAFLVLSHA 124 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTTT------------CCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCccccc------------CCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 455556666677788899999999 77 47889999999999988888777777788888888654
No 84
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=65.79 E-value=13 Score=35.16 Aligned_cols=72 Identities=21% Similarity=0.178 Sum_probs=49.1
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhh--hhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHH
Q 038854 249 LGAILGGGTDNEVEKLRTFARCIGLLFQVVDDI--LDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDA 326 (353)
Q Consensus 249 lga~lag~~~~~~~~l~~~g~~lG~afQI~DDi--ld~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A 326 (353)
+++.+.|.+.+....+...-+.|=.+.-|.||+ +| .+|++.|++|+-..+|...|.-.-..+...|
T Consensus 84 ~~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDIP~mD------------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A 151 (324)
T 3uca_A 84 LSYYIYKSDYKKILTPAMAIEMIHTYSLIHDDLPCMD------------NDDLRRGKPTNHKVFGEAIAVLAGDALLNEA 151 (324)
T ss_dssp HHHHTTCSCGGGGHHHHHHHHHHHHHHHHHHTSTTTT------------CCSEETTEECHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCchhcc------------CCCCCCCCccHHHhcChHHHHHHHHHHHHHH
Confidence 344445566665556666777888899999999 88 4688899999988886655554444555555
Q ss_pred HHHHhc
Q 038854 327 QQQLSE 332 (353)
Q Consensus 327 ~~~L~~ 332 (353)
.+.+..
T Consensus 152 ~~~l~~ 157 (324)
T 3uca_A 152 MKILVD 157 (324)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 554443
No 85
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=65.26 E-value=17 Score=33.29 Aligned_cols=74 Identities=11% Similarity=-0.037 Sum_probs=52.4
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHH
Q 038854 250 GAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQ 329 (353)
Q Consensus 250 ga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~ 329 (353)
++.+.|.+.+....+...-+.|=.+.-|.||+..- .+|.+.|++|+-..+|...|.-....+...|.+.
T Consensus 51 ~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDI~~d-----------D~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~ 119 (274)
T 3kra_B 51 ACELVGGDRSQAMAAAAAIHLVHAAAYVHEHLPLT-----------DGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFEL 119 (274)
T ss_dssp HHHHTTCCGGGGHHHHHHHHHHHHHHHHHHTCCCS-----------SSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCCccc-----------CCccCCCCCCchhhcChHHHHHHHHHHHHHHHHH
Confidence 33444556665566677778888899999999822 1345778888877777777776677778888888
Q ss_pred HhcCC
Q 038854 330 LSEFD 334 (353)
Q Consensus 330 L~~~~ 334 (353)
|...+
T Consensus 120 l~~~~ 124 (274)
T 3kra_B 120 LAGSV 124 (274)
T ss_dssp HHHTC
T ss_pred HHhcC
Confidence 87654
No 86
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=63.23 E-value=16 Score=34.94 Aligned_cols=57 Identities=18% Similarity=0.113 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHHhc
Q 038854 264 LRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSE 332 (353)
Q Consensus 264 l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~ 332 (353)
+...-+.|=.++=|.||++| .+|+|.|++|+-..+|...|.-...-+...|.+.+..
T Consensus 100 la~aiEliH~asLiHDDimD------------~s~~RRG~pt~h~~~G~~~AIl~Gd~L~~~a~~~l~~ 156 (368)
T 2q58_A 100 LGWVVEAIQALILIADDIMD------------SGKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFE 156 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHT------------TCCEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhccc------------CCCCCCCCCccccCcchhhHHHHHHHHHHHHHHHHHH
Confidence 33334556667788999987 4789999999988887766655555555555555543
No 87
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=61.12 E-value=30 Score=32.67 Aligned_cols=59 Identities=20% Similarity=0.173 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHHhcCC
Q 038854 264 LRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFD 334 (353)
Q Consensus 264 l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~~~ 334 (353)
+...-+.|=.+.-|.||++| .+|++.|++|+-..+|...|.-...-+...|.+.+..++
T Consensus 92 ~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~ 150 (348)
T 3apz_A 92 IAEITEMIHVASLLHDDVLD------------DADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALK 150 (348)
T ss_dssp HHHHHHHHHHHHHHHHHC----------------------------CCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccccC------------CCCCCCCCCcHHHHhCchHHHHHHHHHHHHHHHHHHhCC
Confidence 44445556667789999987 367888999988888877776666677777777776653
No 88
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=57.45 E-value=50 Score=31.65 Aligned_cols=65 Identities=20% Similarity=0.100 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCcHHHHH----------------hHHHHHHHHH
Q 038854 257 TDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLL----------------GIEESKKLAD 320 (353)
Q Consensus 257 ~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T~p~l~----------------~le~a~~~~~ 320 (353)
+.+.+..+...-+.|=.+.=|.||++| .+|++.|++|+-.++ |...|.-.-.
T Consensus 86 ~~~~~~~~AaaiEliH~asLIHDDImD------------~s~~RRG~pt~h~~f~~~~~~~~~~~~~~~~G~~~AIL~GD 153 (380)
T 3lk5_A 86 KLESVLDAAASLEFIQACALIHDDIID------------SSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGD 153 (380)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHT------------C-----------------------------CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCcC------------CCCCCCCCcchhHHHHHhhhhcccccchhhcCHHHHHHHHH
Confidence 355555566666777788899999987 467888888888774 6666665666
Q ss_pred HHHHHHHHHHhcC
Q 038854 321 KLNKDAQQQLSEF 333 (353)
Q Consensus 321 ~~~~~A~~~L~~~ 333 (353)
-+...|.+.+...
T Consensus 154 ~Ll~~A~~~l~~~ 166 (380)
T 3lk5_A 154 MALVWAEDMLQDS 166 (380)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHc
Confidence 6677777777654
No 89
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=56.00 E-value=31 Score=32.20 Aligned_cols=60 Identities=22% Similarity=0.210 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHHhcCC
Q 038854 263 KLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFD 334 (353)
Q Consensus 263 ~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~~~ 334 (353)
.+...-+.|=.+.-|.||++| .+|++.|++|+-..+|...|.-....+...|.+.+...+
T Consensus 61 ~~A~aiEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~ 120 (315)
T 3tc1_A 61 NLCTIVEMIQTASLLHDDVID------------KATMRRKLPSINALFGNFNAVMLGDVFYSKAFFELSKMG 120 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHTC----------------------------CCSHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHcCCCC------------CCCCcCCCccHHHHhCchHHHHHHHHHHHHHHHHHHHCc
Confidence 455556667778899999987 367788888888877766666666666667777666554
No 90
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=54.72 E-value=26 Score=31.97 Aligned_cols=72 Identities=7% Similarity=-0.032 Sum_probs=44.6
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHH
Q 038854 249 LGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQ 328 (353)
Q Consensus 249 lga~lag~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~ 328 (353)
+++.+.|.+.+....+...-+.|=.+.-|.||+.|- | + +.|++|+-..+|...|.-...-+...|.+
T Consensus 55 ~~~~~~g~~~~~~~~~A~aiEliH~aSLIHDDI~D~--d----------~-RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~ 121 (273)
T 3qkc_B 55 AACELVGGDRSDAMAAAAAVHLMHVAAYTHENLPLT--D----------G-PMSKSEIQHKFDPNIELLTGDGIIPFGLE 121 (273)
T ss_dssp HHHHHTTCCGGGTHHHHHHHHHHHHHHHHHHSCCBT--T----------B-CSSSSCCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCcccC--c----------c-CCCCCCchhhcCHHHHHHHHHHHHHHHHH
Confidence 344444556666666777778888999999999985 1 1 34555554455555555444555566666
Q ss_pred HHhcC
Q 038854 329 QLSEF 333 (353)
Q Consensus 329 ~L~~~ 333 (353)
.+...
T Consensus 122 ~l~~~ 126 (273)
T 3qkc_B 122 LMARS 126 (273)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 65543
No 91
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=42.89 E-value=36 Score=32.58 Aligned_cols=61 Identities=18% Similarity=0.133 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHH---HHHHHHHh
Q 038854 259 NEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLN---KDAQQQLS 331 (353)
Q Consensus 259 ~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~---~~A~~~L~ 331 (353)
+....+...-+.|=.++=|.||++| .+|++.|++|+-..+|...|.-...-+. ..|.+.|.
T Consensus 95 ~~~~~~A~avEllH~asLIHDDImD------------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~a~~ll~ 158 (368)
T 2her_A 95 DSIYLLGWVVEAIQALILIADDIMD------------SGKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELS 158 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT------------TCCEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHccccc------------CCCCCCCCccHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566677788999999988 4688899999988877665554444444 44444443
No 92
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=42.55 E-value=67 Score=30.98 Aligned_cols=56 Identities=18% Similarity=0.167 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCcHHHHHhHHH--HHHHHHHHHHHHHHHHhc
Q 038854 265 RTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEE--SKKLADKLNKDAQQQLSE 332 (353)
Q Consensus 265 ~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~--a~~~~~~~~~~A~~~L~~ 332 (353)
...-+.|=.++=|.||++| .+|++.|++|+-..++... |.--..-+...|.+.|..
T Consensus 111 A~aiEliH~asLIHDDImD------------~s~~RRG~pt~h~~~g~~~~~AI~~gd~L~~~a~~ll~~ 168 (395)
T 2ihi_A 111 AWCIEILQAAFLVADDIMD------------KGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEI 168 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHT------------TCSEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccc------------CCCCCCCCCCccccCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566678899999987 4678888888766655443 333333444555555554
No 93
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=39.34 E-value=2.2e+02 Score=25.82 Aligned_cols=95 Identities=8% Similarity=-0.010 Sum_probs=54.4
Q ss_pred cC-ChhHHHHHHHhcHHHHHHHH-HHHHHHhCCCCHHHHH--HHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhh
Q 038854 225 DL-GIEHLEFIHEHKTAALLEAA-VVLGAILGGGTDNEVE--KLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLV 300 (353)
Q Consensus 225 ~~-~~~~~~~i~~~KTg~L~~~~-~~lga~lag~~~~~~~--~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~ 300 (353)
.+ +.++|..+.+.-.|..+..+ +.++.- -..+++..+ .+.++-+..+...-+.||+..+..+. .
T Consensus 162 ~P~s~eEYl~~r~~s~g~~~~~~~~~~~~g-~~l~~~~~~~p~~~~l~~~~~~i~rL~NDl~S~~kE~-----------~ 229 (337)
T 1ps1_A 162 PCDSAAQYLAMRRHTIGVQPTVDLAERAGR-FEVPHRVFDSAVMSAMLQIAVDVNLLLNDIASLEKEE-----------A 229 (337)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHHHHT-CCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHTHHHHH-----------H
T ss_pred CCCCHHHHHHHcccccchhhHHHHHHHHcC-CCCCHHHHhChHHHHHHHHHHHHHHHHHHHhhHHHHH-----------h
Confidence 45 78888887644444433222 222221 123444332 45677788888888999999985432 2
Q ss_pred cCC-CcHHHHH------hHHHHHHHHHHHHHHHHHHHh
Q 038854 301 ADK-LTYPKLL------GIEESKKLADKLNKDAQQQLS 331 (353)
Q Consensus 301 ~gk-~T~p~l~------~le~a~~~~~~~~~~A~~~L~ 331 (353)
+|. .+...++ ..|.|.+.+.++++++.+.+.
T Consensus 230 ~G~~~n~V~~~m~~~g~s~eeA~~~v~~~i~~~~~~~~ 267 (337)
T 1ps1_A 230 RGEQNNMVMILRREHGWSKSRSVSHMQNEVRARLEQYL 267 (337)
T ss_dssp TTCCCSHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 333 3444444 467777777777766666544
No 94
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=35.61 E-value=2.3e+02 Score=27.38 Aligned_cols=60 Identities=10% Similarity=0.024 Sum_probs=36.0
Q ss_pred cCChhHHHHHHHhcHHHHHHHHHHHHHHhC-CCCHHHHH--HHHHHHHHHHHHHHhhhhhhhccc
Q 038854 225 DLGIEHLEFIHEHKTAALLEAAVVLGAILG-GGTDNEVE--KLRTFARCIGLLFQVVDDILDLTK 286 (353)
Q Consensus 225 ~~~~~~~~~i~~~KTg~L~~~~~~lga~la-g~~~~~~~--~l~~~g~~lG~afQI~DDild~~~ 286 (353)
..++++|..+. ..||....+.+ +....+ ...++..+ .+.++-+..+...-+.||+..|..
T Consensus 283 vPsleEYl~~R-~~sg~~p~~~l-~e~~~g~~lp~~v~~~p~~~~L~~~~~~i~rL~NDI~Sy~k 345 (433)
T 3v1v_A 283 VPEVWEYLAMR-QFNNFRPCPTI-TDTVGGYELPADLHARPDMQRVIALAGNATTIVNDLYSYTK 345 (433)
T ss_dssp CCCHHHHHHHH-HHSSSTTTGGG-HHHHHTCCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred CCCHHHHHHHH-HHHhHHHHHHH-HHHHcCCCCCHHHHhCchHHHHHHHHHHHHHHhchHHHHHH
Confidence 46888888874 45554311111 111122 23444433 566778888888889999999964
No 95
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=34.75 E-value=2.3e+02 Score=28.61 Aligned_cols=94 Identities=7% Similarity=0.011 Sum_probs=58.6
Q ss_pred cCChhHHHHHHHhcHHHH-HHHHHHHHHHhCC-CCHHHHHHH---HHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhh
Q 038854 225 DLGIEHLEFIHEHKTAAL-LEAAVVLGAILGG-GTDNEVEKL---RTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDL 299 (353)
Q Consensus 225 ~~~~~~~~~i~~~KTg~L-~~~~~~lga~lag-~~~~~~~~l---~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl 299 (353)
.++.++|.....--+|.- +...+.+|+ +. .+++..+.+ -++-+..+...-+.||+..+..+.
T Consensus 392 vPT~EEYl~na~vSsg~~~l~~~~~~~m--g~~lt~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~----------- 458 (555)
T 3n0f_A 392 TPTFDDYFGNAWKSSSGPLQLIFAYFAV--VQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEI----------- 458 (555)
T ss_dssp CCCHHHHHHHHHHHTSHHHHHHHHHHHH--CSSCCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred CCCHHHHHHhcccchhHHHHHHHHHHhc--CCCCCHHHHHhcccchHHHHHHHHHHHHhccchhhhhhh-----------
Confidence 468888888765444443 222222222 32 456655543 366778888888999999985322
Q ss_pred hcCCC-cHHHHH------hHHHHHHHHHHHHHHHHHHHh
Q 038854 300 VADKL-TYPKLL------GIEESKKLADKLNKDAQQQLS 331 (353)
Q Consensus 300 ~~gk~-T~p~l~------~le~a~~~~~~~~~~A~~~L~ 331 (353)
..|.+ +...++ ..|.|.+.+++.++.+++.|.
T Consensus 459 ~rG~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN 497 (555)
T 3n0f_A 459 ARGETANSVSCYMRTKGISEELATESVMNLIDETWKKMN 497 (555)
T ss_dssp TTTCCCSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 23333 444333 468889999999999988775
No 96
>3aqb_A Component A of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_A*
Probab=33.14 E-value=23 Score=29.31 Aligned_cols=52 Identities=21% Similarity=0.224 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Q 038854 138 EMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYI 212 (353)
Q Consensus 138 EliH~asLIHDDI~~iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~l~~~i 212 (353)
=-|-|.--+.||| +++. ...-||+||++-+.-+.+|++.. ....+..+++++
T Consensus 52 laIDTsmrv~d~i---~~n~-------------K~riVLaGD~~Sa~fY~lLa~~~-------~~~~i~~lS~aI 103 (147)
T 3aqb_A 52 VAIDTSMRMQDFI---NEDN-------------KDSFVLSTDVLSALFYKYLSQPF-------YQHDFLVLTDCV 103 (147)
T ss_dssp HHHHHHHHHGGGC---CTTT-------------HHHHHHHHHHHHHHHHHHTBTTB-------CHHHHHHHHHHH
T ss_pred eEeccHHHhhccc---ccCC-------------ccceEeehHHHHHHHHHHHcChh-------hHHHHHHHHHHH
Confidence 4466777788887 3221 11146999999999999998542 234445556655
No 97
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=31.03 E-value=2.2e+02 Score=28.70 Aligned_cols=94 Identities=11% Similarity=0.096 Sum_probs=57.9
Q ss_pred cCChhHHHHHHHhcHHHHH-HHHHHHHHHhCC-CCHHHHHHH---HHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhh
Q 038854 225 DLGIEHLEFIHEHKTAALL-EAAVVLGAILGG-GTDNEVEKL---RTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDL 299 (353)
Q Consensus 225 ~~~~~~~~~i~~~KTg~L~-~~~~~lga~lag-~~~~~~~~l---~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl 299 (353)
.++.++|.....--+|..+ ...+.+|+ +. .+++..+.+ .++-+..+...-+.||+..+..+.
T Consensus 394 vPT~EEYl~na~vSsg~~~l~~~~~~~m--g~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~----------- 460 (554)
T 3g4d_A 394 KPSFEEFKANALPTCGYAMLAITSFVGM--GDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKH----------- 460 (554)
T ss_dssp CCCHHHHHHHHGGGSCHHHHHHHHHHTS--CTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC-------------
T ss_pred CCCHHHHHhccceeehHHHHHHHHHHhc--CCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhh-----------
Confidence 4688988887655455432 22222221 22 456655543 367888899999999999985332
Q ss_pred hcCCC-cHHHHH------hHHHHHHHHHHHHHHHHHHHh
Q 038854 300 VADKL-TYPKLL------GIEESKKLADKLNKDAQQQLS 331 (353)
Q Consensus 300 ~~gk~-T~p~l~------~le~a~~~~~~~~~~A~~~L~ 331 (353)
..|.. +...++ ..|.|.+.+++.++.+++.+.
T Consensus 461 ~rG~van~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN 499 (554)
T 3g4d_A 461 RREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLN 499 (554)
T ss_dssp ----CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 22332 443333 468899999999999988775
No 98
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=30.74 E-value=1.1e+02 Score=29.11 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCcHHHHHh
Q 038854 266 TFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLG 311 (353)
Q Consensus 266 ~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T~p~l~~ 311 (353)
..-+.|=.++-|.||++|= +|++.|++|+-..+|
T Consensus 111 ~avEliH~asLIHDDImD~------------s~~RRG~pt~h~~~G 144 (374)
T 2qis_A 111 WCVELLQAFFLVADDIMDS------------SLTRRGQICWYQKPG 144 (374)
T ss_dssp HHHHHHHHHHHHHHHHHTT------------CCEETTEECGGGSTT
T ss_pred HHHHHHHHHHHHHccccCC------------CCCCCCCccHHHhcC
Confidence 4455566678899999773 455666666554443
No 99
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=27.05 E-value=1.5e+02 Score=27.91 Aligned_cols=55 Identities=18% Similarity=0.201 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCcHHHHHhH--HHHHHHHHHHHHHHHHHHhcC
Q 038854 267 FARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGI--EESKKLADKLNKDAQQQLSEF 333 (353)
Q Consensus 267 ~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T~p~l~~l--e~a~~~~~~~~~~A~~~L~~~ 333 (353)
.-+.|=.+.=|.||++| .+|++.|++|+-..+|. ..|.-...-+...|.+.+...
T Consensus 86 avEliH~asLiHDDI~D------------~s~~RRG~pt~h~~~g~~~~~Ail~Gd~L~~~a~~~l~~~ 142 (362)
T 1yhl_A 86 MIEFLQAHYLVEDDIMD------------GSVMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHY 142 (362)
T ss_dssp HHHHHHHHHHHHHHHHH------------TCCEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccC------------CCCCCCCCccHHhccCccHhHHHHHHHHHHHHHHHHHHHh
Confidence 45556667789999987 36778888888777766 345555556667777776653
No 100
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=26.80 E-value=4.9e+02 Score=26.05 Aligned_cols=94 Identities=15% Similarity=0.115 Sum_probs=58.9
Q ss_pred cCChhHHHHHHHhcHHHHHHH-HHHHHHHhCCCCHHHHHHH---HHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhh
Q 038854 225 DLGIEHLEFIHEHKTAALLEA-AVVLGAILGGGTDNEVEKL---RTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLV 300 (353)
Q Consensus 225 ~~~~~~~~~i~~~KTg~L~~~-~~~lga~lag~~~~~~~~l---~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~ 300 (353)
.++.++|.....--+|..+.. .+.+|. -..+.+..+-+ -++-+..+...-+.||+..+..+ ..
T Consensus 390 vPT~EEYl~na~vSsg~~~l~~~~f~g~--~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E-----------~~ 456 (550)
T 3m00_A 390 TPPVSEYLSNALATTTYYLLATTSYLGM--KSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVE-----------KS 456 (550)
T ss_dssp CCCHHHHHHHHTGGGSHHHHHHHHHHTC--TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHSHHHH-----------HH
T ss_pred CCCHHHHHHhccccchHHHHHHHHHHcC--CCCcHHHHHhhcccHHHHHHHhhhheeeccchhHHHH-----------Hh
Confidence 468899888865555543222 122221 12456655543 36778888899999999998532 22
Q ss_pred cCCC-cHHHHH------hHHHHHHHHHHHHHHHHHHHh
Q 038854 301 ADKL-TYPKLL------GIEESKKLADKLNKDAQQQLS 331 (353)
Q Consensus 301 ~gk~-T~p~l~------~le~a~~~~~~~~~~A~~~L~ 331 (353)
.|+. +....+ ..|.|.+.+++.++.+++.+.
T Consensus 457 rG~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN 494 (550)
T 3m00_A 457 RGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDIN 494 (550)
T ss_dssp TTCTTSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3343 443333 468889999999999988775
No 101
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=25.46 E-value=5.1e+02 Score=25.75 Aligned_cols=95 Identities=11% Similarity=0.122 Sum_probs=57.5
Q ss_pred cCChhHHHHHHHhcHHHH-HHHHHHHHHHhCC-CCHHHHHHH---HHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhh
Q 038854 225 DLGIEHLEFIHEHKTAAL-LEAAVVLGAILGG-GTDNEVEKL---RTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDL 299 (353)
Q Consensus 225 ~~~~~~~~~i~~~KTg~L-~~~~~~lga~lag-~~~~~~~~l---~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl 299 (353)
.++.++|......-.|.. +......|+ ++ .+++..+.+ -++-+..+...-+.||+..+..+ .
T Consensus 383 vPt~eEYl~~~~vS~g~~~l~~~~~~~~--g~~~t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E-----------~ 449 (543)
T 2ong_A 383 KPSLEEYLENSWQSISGPCMLTHIFFRV--TDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEE-----------V 449 (543)
T ss_dssp CCCHHHHHHHHHHHTCHHHHHHHHHHHH--SSCCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHSSHHH-----------H
T ss_pred CCCHHHHHhcccccchHHHHHHHHHHHc--CCCCCHHHHHHhcccHHHHHHHHHHHHHhcccchhhhc-----------c
Confidence 357888887764444432 222222222 33 455544432 35667778888889999988532 2
Q ss_pred hcCCC-cHHHHH------hHHHHHHHHHHHHHHHHHHHhc
Q 038854 300 VADKL-TYPKLL------GIEESKKLADKLNKDAQQQLSE 332 (353)
Q Consensus 300 ~~gk~-T~p~l~------~le~a~~~~~~~~~~A~~~L~~ 332 (353)
..|.+ +...++ ..|.|.+.+.+.++++.+.+..
T Consensus 450 ~rG~~~n~V~cyMke~g~s~eeA~~~i~~~ie~~wk~ln~ 489 (543)
T 2ong_A 450 SRGDVPKSLQCYMSDYNASEAEARKHVKWLIAEVWKKMNA 489 (543)
T ss_dssp HTSCCCCHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 23332 444443 4678888888999999888876
No 102
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=24.73 E-value=2e+02 Score=27.13 Aligned_cols=36 Identities=19% Similarity=0.065 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcchhhhcCCCcHHHHH
Q 038854 263 KLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLL 310 (353)
Q Consensus 263 ~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~Dl~~gk~T~p~l~ 310 (353)
.+...-+.|=.++=|.||++|= +|++.|++|+-..+
T Consensus 101 ~~A~aiEliH~asLiHDDImD~------------s~~RRG~pt~h~~~ 136 (367)
T 1uby_A 101 AVGWCIELFQAASLVADDIMDQ------------SLTRRGQLCWYKKE 136 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT------------CCEETTEECGGGST
T ss_pred HHHHHHHHHHHHHHHhCcccCC------------CCCCCCCCChhhcc
Confidence 3444455566678899999873 45555555554443
No 103
>4err_A Autotransporter adhesin; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.55A {Vibrio vulnificus}
Probab=23.15 E-value=2.5e+02 Score=21.30 Aligned_cols=70 Identities=21% Similarity=0.313 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHH-hhhhhhhcccchhhhCCCcchhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 038854 259 NEVEKLRTFARCIGLLFQ-VVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEK 337 (353)
Q Consensus 259 ~~~~~l~~~g~~lG~afQ-I~DDild~~~~~~~~GK~~g~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~~~~~~ 337 (353)
|..++...+|+.+|-.|| |.|++-+|..... +| .++ ...++-.+.-..+.+-|.+.
T Consensus 9 EL~~aA~V~gK~~G~SYq~iid~l~eyh~~~~-------~~------------~~e----~l~~L~~kie~Yl~~hPdS~ 65 (90)
T 4err_A 9 ELKERAKVFAKPIGASYQGILDQLDLVHQAKG-------RD------------QIA----ASFELNKKINDYIAEHPTSG 65 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HH------------HHH----HHHHHHHHHHHHHHHCCSCH
T ss_pred HHHHHHHHHHhhcCchHHHHHHHHHHHHHHcc-------hH------------HHH----HHHHHHHHHHHHHhcCCchh
Confidence 456778889999999996 7788888764322 11 111 12234455555555556554
Q ss_pred h-HHHHHHHHHHHhc
Q 038854 338 A-VPLIALANYIAYR 351 (353)
Q Consensus 338 ~-~~L~~l~~~i~~R 351 (353)
. +.|.++-+-+-.|
T Consensus 66 Rv~al~qlldQv~sr 80 (90)
T 4err_A 66 RNQALTQLKEQVTSA 80 (90)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 4 7777776665544
Done!