RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 038854
(353 letters)
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Escherichia coli [TaxId:
562]}
Length = 299
Score = 184 bits (468), Expect = 8e-57
Identities = 119/296 (40%), Positives = 156/296 (52%), Gaps = 12/296 (4%)
Query: 68 DFKSYMIQKASTVNQALDAAVS--LKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGG 125
DF + NQAL ++ + E+M+Y L GGKR+RP L A + G
Sbjct: 2 DFPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGV 61
Query: 126 HESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYA 185
+ A ++E IH SLIHDDLP MD+D LRRG PT H +GE A+LAGDAL A
Sbjct: 62 STNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLA 121
Query: 186 FEHIA-VCTKGVSPARIVRAIAELAKYIGADGLVAGQA------EKDLGIEHLEFIHEHK 238
F ++ VS + I+ELA G G+ GQA K + ++ LE IH HK
Sbjct: 122 FSILSDADMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHK 181
Query: 239 TAALLEAAVVLGAILGGGTDNEVEKL-RTFARCIGLLFQVVDDILDLTKSSKELGKTAGK 297
T AL+ AAV LGA+ G + +A IGL FQV DDILD+ + LGK G
Sbjct: 182 TGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGA 241
Query: 298 DLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQE--KAVPLIALANYIAYR 351
D K TYP LLG+E+++K A L DA+Q L + ++ L ALA+YI R
Sbjct: 242 DQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQR 297
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Staphylococcus aureus [TaxId:
1280]}
Length = 290
Score = 160 bits (404), Expect = 2e-47
Identities = 109/288 (37%), Positives = 156/288 (54%), Gaps = 9/288 (3%)
Query: 72 YMIQKASTVNQALDAAV-SLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMA 130
M + VN L A+ ++ ESM YSL AGGKR+RPVL L D + +
Sbjct: 4 PMNKLIDEVNNELSVAINKSVMDTQLEESMLYSLNAGGKRIRPVLLLLTLDSLNTEYELG 63
Query: 131 MPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIA 190
M +A ++EMIHT SLIHDDLP MDND RRGK TNH +YGE A+LAGDALL AFE I+
Sbjct: 64 MKSAIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELIS 123
Query: 191 VCTKGVSPARIVRAIAELAKYIGADGLVAGQA------EKDLGIEHLEFIHEHKTAALLE 244
++ ++ + L+ G G+V GQ + + +E LE IH+ KT ALL
Sbjct: 124 -SDDRLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLT 182
Query: 245 AAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKL 304
AV+ A + D E L +++ +G++FQ+ DD+LD +LGK G DL +K
Sbjct: 183 FAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKS 242
Query: 305 TYPKLLGIEESKKLADKLNKDAQQQLSEFDQE-KAVPLIALANYIAYR 351
TY LLG + ++ A +L++ D++ L+ + + R
Sbjct: 243 TYVSLLGKDGAEDKLTYHRDAAVDELTQIDEQFNTKHLLEIVDLFYSR 290
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga
maritima [TaxId: 2336]}
Length = 280
Score = 112 bits (279), Expect = 2e-29
Identities = 56/268 (20%), Positives = 95/268 (35%), Gaps = 17/268 (6%)
Query: 71 SYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHES-M 129
SY ++K V + ++ +S P E + L GK +R L + + G
Sbjct: 2 SYELEK---VKERIEQILSQFFP----EQIMKDLPLYGKMLRVRLSILSFKNRGVEIGED 54
Query: 130 AMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHI 189
A+ + ++E++H SL+HDD+ TI A A
Sbjct: 55 AISSLAALELVHLASLLHDDVIDGARFR-----RGKETINFMYGDKAAVAAGDLVLVSAF 109
Query: 190 AVCTKGVSPARIVRAIAELAKYIGADGLVAGQAEKDLGIEHLEFIHEHKTAALLEAAVVL 249
+ + + + K A+ + K + E I E K+ AL A+ L
Sbjct: 110 HTVEEIGNNKLRRAFLNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQL 169
Query: 250 GAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKL 309
A+L E L IG ++Q+ DDI+D K DL ++P +
Sbjct: 170 PALLE---GELGEDLYNLGVTIGTIYQMFDDIMDFAGMEKIGKDG-FLDLKNGVASFPLV 225
Query: 310 LGIEESKKLADKLNKDAQQQLSEFDQEK 337
+E+ + L F +EK
Sbjct: 226 TAMEKFPEARQMFENRDWSGLMSFMREK 253
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 291
Score = 109 bits (273), Expect = 2e-28
Identities = 60/255 (23%), Positives = 95/255 (37%), Gaps = 7/255 (2%)
Query: 96 IHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDN 155
+ E +Y L GK+VR L A + E EM+H SL+ DD+ DN
Sbjct: 7 LLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDI--EDN 64
Query: 156 DPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGAD 215
LRRG P H+IYG + + + + E + + R + EL + G D
Sbjct: 65 SKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLD 124
Query: 216 GLVAGQAEKDLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLF 275
E + + KT L AV L + + E L+ +GL F
Sbjct: 125 IY-WRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLF----SDYKEDLKPLLNTLGLFF 179
Query: 276 QVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQ 335
Q+ DD +L K+ +DL K ++P + I + N Q+ + +
Sbjct: 180 QIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIK 239
Query: 336 EKAVPLIALANYIAY 350
+ V + Y
Sbjct: 240 KYCVHYLEDVGSFEY 254
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 348
Score = 98.9 bits (245), Expect = 5e-24
Identities = 51/302 (16%), Positives = 97/302 (32%), Gaps = 23/302 (7%)
Query: 68 DFKSYMIQKASTVNQALDAAVSLKDPVK-IHESMRYSLLAGGKRVRPVLCLAACDLVGGH 126
+F + Q + + + D V + E ++Y+ GGK R + +AA + G
Sbjct: 11 EFVGFFPQIVRDLTEDGIGHPEVGDAVARLKEVLQYNA-PGGKCNRGLTVVAAYRELSGP 69
Query: 127 ESM-------AMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGD 179
A+ IE+ L+ DD+ MD RRG+ + G + +
Sbjct: 70 GQKDAESLRCALAVGWCIELFQAFFLVADDI--MDQSLTRRGQLCWYKKEGVGLDAINDS 127
Query: 180 ALLAYAFEHIAVCTKGVSPARI------VRAIAELAKYIGADGLVAGQAEKDLGI----E 229
LL + + P + ++ + D + A ++ DL
Sbjct: 128 FLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEER 187
Query: 230 HLEFIHEHKTAALLEAAVVL-GAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSS 288
+ + V ++G + E E + +G FQ+ DD LD
Sbjct: 188 YKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDP 247
Query: 289 KELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYI 348
GK +K ++ + ++ +L +D + K L
Sbjct: 248 ALTGKVGTDI-QDNKCSWLVVQCLQRVTPEQRQLLEDNYGRKEPEKVAKVKELYEAVGMR 306
Query: 349 AY 350
A
Sbjct: 307 AA 308
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol
methylhydroxylase {Pseudomonas putida [TaxId: 303]}
Length = 236
Score = 30.5 bits (67), Expect = 0.25
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 190 AVCTKGVSPARIVRAIAELAKYIGADGLVAGQAE 223
AV KGV+ +A+ + +G D ++ +
Sbjct: 1 AVLPKGVTQGEFNKAVQKFRALLGDDNVLVESDQ 34
>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase
(ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId:
4081]}
Length = 428
Score = 27.7 bits (60), Expect = 2.6
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 173 VAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGA 214
+ V G + VC + + A+A + +++G
Sbjct: 385 LNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFVGV 426
>d1kf6b1 a.1.2.1 (B:106-243) Fumarate reductase {Escherichia coli
[TaxId: 562]}
Length = 138
Score = 26.0 bits (56), Expect = 4.1
Identities = 21/109 (19%), Positives = 30/109 (27%), Gaps = 19/109 (17%)
Query: 116 CLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAV 175
C AAC G + PAA ++ + + + T G V
Sbjct: 49 CYAACPQFGLNPEFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEV 108
Query: 176 LAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQAEK 224
C K V PA AI + D L+A +
Sbjct: 109 ----------------CPKHVDPA---AAIQQGKVESSKDFLIATLKPR 138
>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella
thermoacetica [TaxId: 1525]}
Length = 549
Score = 27.1 bits (60), Expect = 4.3
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 8/39 (20%)
Query: 148 DDLP-CM-------DNDPLRRGKPTNHTIYGEDVAVLAG 178
+LP M +D + G+P N TI +V + AG
Sbjct: 475 GNLPVVMAKTQYSFSDDMTKLGRPRNFTITVREVRLSAG 513
>g1hle.1 e.1.1.1 (A:,B:) Elastase inhibitor {Horse (Equus caballus)
[TaxId: 9796]}
Length = 375
Score = 26.4 bits (57), Expect = 5.4
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 196 VSPARIVRAIAELAKYIGADGLVAGQAEKDLGIEHLEFIHEH 237
+SP I A+A + ++G G A Q K L + +E IH
Sbjct: 30 ISPLSISSALAMI--FLGTRGNTAAQVSKALYFDTVEDIHSR 69
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 25.4 bits (55), Expect = 9.2
Identities = 12/86 (13%), Positives = 27/86 (31%), Gaps = 4/86 (4%)
Query: 88 VSLKDPVKIHESM--RYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSL 145
V++K P + + ++ +LA + V+ + DL + + I +
Sbjct: 18 VTVKMP-ETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIV 76
Query: 146 IHDDL-PCMDNDPLRRGKPTNHTIYG 170
+ K T+ G
Sbjct: 77 KTSAKTGMGIEELKEYLKGKISTMAG 102
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.378
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,221,111
Number of extensions: 55335
Number of successful extensions: 151
Number of sequences better than 10.0: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 14
Length of query: 353
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 267
Effective length of database: 1,226,816
Effective search space: 327559872
Effective search space used: 327559872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.8 bits)