BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038855
(260 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O42643|PRP22_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp22 PE=1 SV=1
Length = 1168
Score = 244 bits (623), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 132/260 (50%), Positives = 165/260 (63%), Gaps = 41/260 (15%)
Query: 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMI 60
E L+DP LS+YSVII+DEAHERTV TDVL GLLK +
Sbjct: 615 ECLVDPLLSKYSVIILDEAHERTVATDVLFGLLKGT-----------------------V 651
Query: 61 LDRENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEIL 120
L R P LKLI+ SA+LDA FS YF + GR +PVEI+
Sbjct: 652 LKR------------------PDLKLIVTSATLDAERFSSYFYKCPIFTIPGRSYPVEIM 693
Query: 121 YTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKL 180
YT PE D+LDA L+T+ Q+HL E PGDILVFLTGQEEI++ ++ ER L ++ +L
Sbjct: 694 YTKQPEADYLDAALMTVMQIHLSEGPGDILVFLTGQEEIDTSCEILYERSKMLGDSIPEL 753
Query: 181 VTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYDP 240
V +P++S+LPSE Q ++F PA G RKV++ATNIAETS+TI GI YV+DPGFVK +DP
Sbjct: 754 VILPVYSALPSEIQSRIFEPAPPGGRKVVIATNIAETSLTIDGIYYVVDPGFVKQSCFDP 813
Query: 241 VKGMESLIVVPISKAQALQR 260
GM+SLIV PIS+AQA QR
Sbjct: 814 KLGMDSLIVTPISQAQARQR 833
>sp|Q09530|MOG5_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5
OS=Caenorhabditis elegans GN=mog-5 PE=1 SV=1
Length = 1200
Score = 241 bits (615), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 128/260 (49%), Positives = 164/260 (63%), Gaps = 41/260 (15%)
Query: 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMI 60
E L+DP LS YS+I++DEAHERT+HTDVL GLLK
Sbjct: 644 ECLIDPDLSGYSLIMLDEAHERTIHTDVLFGLLK-------------------------- 677
Query: 61 LDRENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEIL 120
RK P LKLII SA+LD+ FSEYF A + GR FPVEIL
Sbjct: 678 ---------------AAARKRPELKLIITSATLDSVKFSEYFLEAPIFTIPGRTFPVEIL 722
Query: 121 YTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKL 180
YT PE D+L+A IT+ Q+HL E PGD+LVFLTGQEEI++ ++ ER+ + +L
Sbjct: 723 YTREPESDYLEAAHITVMQIHLTEPPGDVLVFLTGQEEIDTSCEVLYERMKSMGPDVPEL 782
Query: 181 VTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYDP 240
+ +P++ +LPSE Q ++F PA AG RKV++ATNIAETS+TI GI YV+DPGFVK + Y+P
Sbjct: 783 IILPVYGALPSEMQTRIFDPAPAGKRKVVIATNIAETSLTIDGIFYVVDPGFVKQKIYNP 842
Query: 241 VKGMESLIVVPISKAQALQR 260
GM+SL+V PIS+A A QR
Sbjct: 843 KSGMDSLVVTPISQAAAKQR 862
>sp|Q54F05|DHX8_DICDI ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8
PE=3 SV=1
Length = 1160
Score = 239 bits (609), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 127/260 (48%), Positives = 164/260 (63%), Gaps = 41/260 (15%)
Query: 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMI 60
E LLDP LS YSVII+DEAHERT+ TDVL GLLK+ R
Sbjct: 612 ECLLDPNLSAYSVIILDEAHERTISTDVLFGLLKQALQRR-------------------- 651
Query: 61 LDRENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEIL 120
P LK++I SA+L+A FS+YF A+ + GR FPV+I
Sbjct: 652 ---------------------PELKVLITSATLEAEKFSKYFMNAQLFIIPGRTFPVDIR 690
Query: 121 YTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKL 180
YT PE D+LDA+LIT+ Q+HL E PGDIL+FLTGQEEI++ +++ ER+ L L
Sbjct: 691 YTKDPEADYLDASLITVMQIHLSEPPGDILLFLTGQEEIDAACQILYERMKSLGSNVPDL 750
Query: 181 VTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYDP 240
+ +P++S+LPSE Q K+F PA G RKV++ATNIAETS+TI GI YVIDPGF K + ++P
Sbjct: 751 IILPVYSALPSEMQTKIFEPAPPGSRKVVIATNIAETSLTIDGIYYVIDPGFSKQKCFNP 810
Query: 241 VKGMESLIVVPISKAQALQR 260
GM+SL+V PIS+A A QR
Sbjct: 811 KNGMDSLVVAPISQAAARQR 830
>sp|Q14562|DHX8_HUMAN ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1
Length = 1220
Score = 238 bits (608), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 124/260 (47%), Positives = 165/260 (63%), Gaps = 41/260 (15%)
Query: 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMI 60
E L+DP L++Y++I++DEAHERT+HTDVL GLLKK R
Sbjct: 669 ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQD------------------ 710
Query: 61 LDRENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEIL 120
+KLI+ SA+LDA FS+YF A + GR +PVEIL
Sbjct: 711 -----------------------MKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEIL 747
Query: 121 YTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKL 180
YT PE D+LDA+LIT+ Q+HL E PGDILVFLTGQEEI++ ++ ER+ L +L
Sbjct: 748 YTKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERMKSLGPDVPEL 807
Query: 181 VTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYDP 240
+ +P++S+LPSE Q ++F PA G RKV++ATNIAETS+TI GI YV+DPGFVK + Y+
Sbjct: 808 IILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNS 867
Query: 241 VKGMESLIVVPISKAQALQR 260
G++ L+V PIS+AQA QR
Sbjct: 868 KTGIDQLVVTPISQAQAKQR 887
>sp|A2A4P0|DHX8_MOUSE ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1
Length = 1244
Score = 238 bits (607), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 124/260 (47%), Positives = 165/260 (63%), Gaps = 41/260 (15%)
Query: 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMI 60
E L+DP L++Y++I++DEAHERT+HTDVL GLLKK R
Sbjct: 693 ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQD------------------ 734
Query: 61 LDRENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEIL 120
+KLI+ SA+LDA FS+YF A + GR +PVEIL
Sbjct: 735 -----------------------MKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEIL 771
Query: 121 YTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKL 180
YT PE D+LDA+LIT+ Q+HL E PGDILVFLTGQEEI++ ++ ER+ L +L
Sbjct: 772 YTKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERMKSLGPDVPEL 831
Query: 181 VTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYDP 240
+ +P++S+LPSE Q ++F PA G RKV++ATNIAETS+TI GI YV+DPGFVK + Y+
Sbjct: 832 IILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNS 891
Query: 241 VKGMESLIVVPISKAQALQR 260
G++ L+V PIS+AQA QR
Sbjct: 892 KTGIDQLVVTPISQAQAKQR 911
>sp|Q03319|PRH1_SCHPO Probable ATP-dependent RNA helicase prh1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=prh1 PE=3 SV=2
Length = 719
Score = 233 bits (593), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 122/260 (46%), Positives = 163/260 (62%), Gaps = 41/260 (15%)
Query: 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMI 60
E + DP LS+Y +I+DEAHERT+ TD+LLG +KK+ R
Sbjct: 200 ELINDPILSQYHTLILDEAHERTLMTDMLLGFVKKIIKKR-------------------- 239
Query: 61 LDRENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEIL 120
P L++IIMSA+L+A FSE+F A+ ++ GRQ+PV+I
Sbjct: 240 ---------------------PALRVIIMSATLNAERFSEFFDGAEICYISGRQYPVQIH 278
Query: 121 YTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKL 180
YT PEPD+LDA L TIFQ+H PGDILVFLTGQ+EIE++E L++ QLP ++
Sbjct: 279 YTYTPEPDYLDACLRTIFQLHTKLPPGDILVFLTGQDEIEALEALIKSYSKQLPSNLPQI 338
Query: 181 VTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYDP 240
P+F+SLP EQQ++VF PA A RKV+L+TNIAETSVTI GI+YVID G K + ++
Sbjct: 339 QACPLFASLPQEQQLQVFLPALANHRKVVLSTNIAETSVTISGIRYVIDTGLAKIKQFNS 398
Query: 241 VKGMESLIVVPISKAQALQR 260
G+ESL V PIS++ A+QR
Sbjct: 399 KLGLESLTVQPISQSAAMQR 418
>sp|Q38953|DHX8_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2
Length = 1168
Score = 231 bits (590), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 126/260 (48%), Positives = 162/260 (62%), Gaps = 41/260 (15%)
Query: 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMI 60
E L+D LS+YSVI++DEAHERT+HTDVL GLLKK+ R
Sbjct: 619 EILIDENLSQYSVIMLDEAHERTIHTDVLFGLLKKLMKRR-------------------- 658
Query: 61 LDRENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEIL 120
LD L+LI+ SA+LDA FS YF + GR FPVEIL
Sbjct: 659 LD---------------------LRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEIL 697
Query: 121 YTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKL 180
YT PE D+LDA LIT+ Q+HL E GDILVFLTGQEEI+S + + ER+ L + +L
Sbjct: 698 YTKQPETDYLDAALITVLQIHLTEPEGDILVFLTGQEEIDSACQSLYERMKGLGKNVPEL 757
Query: 181 VTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYDP 240
+ +P++S+LPSE Q ++F P G RKV++ATNIAE S+TI GI YV+DPGF K Y+P
Sbjct: 758 IILPVYSALPSEMQSRIFDPPPPGKRKVVVATNIAEASLTIDGIYYVVDPGFAKQNVYNP 817
Query: 241 VKGMESLIVVPISKAQALQR 260
+G+ESL++ PIS+A A QR
Sbjct: 818 KQGLESLVITPISQASAKQR 837
>sp|Q767K6|DHX16_PIG Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Sus scrofa GN=DHX16 PE=3 SV=1
Length = 1045
Score = 228 bits (581), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 117/260 (45%), Positives = 161/260 (61%), Gaps = 41/260 (15%)
Query: 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMI 60
E L +P L+ YSV++VDEAHERT+HTD+L GL+K V R
Sbjct: 508 EFLSEPDLASYSVVMVDEAHERTLHTDILFGLIKDVARFR-------------------- 547
Query: 61 LDRENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEIL 120
P LK+++ SA+LD FS +F A + GR+FPV+I
Sbjct: 548 ---------------------PELKVLVASATLDTARFSTFFDDAPVFRIPGRRFPVDIF 586
Query: 121 YTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKL 180
YT PE D+L+A ++++ Q+H+ + PGDILVFLTGQEEIE+ ++Q+R +L R+L
Sbjct: 587 YTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIREL 646
Query: 181 VTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYDP 240
+ +PI+++LPS+ Q ++F P G RKV++ATNIAETS+TI GI YV+DPGF K +SY+P
Sbjct: 647 LVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNP 706
Query: 241 VKGMESLIVVPISKAQALQR 260
GMESL V P SKA A QR
Sbjct: 707 RTGMESLTVTPCSKASANQR 726
>sp|O60231|DHX16_HUMAN Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Homo sapiens GN=DHX16 PE=1 SV=2
Length = 1041
Score = 227 bits (578), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 116/260 (44%), Positives = 161/260 (61%), Gaps = 41/260 (15%)
Query: 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMI 60
E L +P L+ YSV++VDEAHERT+HTD+L GL+K V R
Sbjct: 504 EFLSEPDLASYSVVMVDEAHERTLHTDILFGLIKDVARFR-------------------- 543
Query: 61 LDRENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEIL 120
P LK+++ SA++D FS +F A + GR+FPV+I
Sbjct: 544 ---------------------PELKVLVASATMDTARFSTFFDDAPVFRIPGRRFPVDIF 582
Query: 121 YTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKL 180
YT PE D+L+A ++++ Q+H+ + PGDILVFLTGQEEIE+ ++Q+R +L R+L
Sbjct: 583 YTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIREL 642
Query: 181 VTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYDP 240
+ +PI+++LPS+ Q ++F P G RKV++ATNIAETS+TI GI YV+DPGF K +SY+P
Sbjct: 643 LVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNP 702
Query: 241 VKGMESLIVVPISKAQALQR 260
GMESL V P SKA A QR
Sbjct: 703 RTGMESLTVTPCSKASANQR 722
>sp|Q7YR39|DHX16_PANTR Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Pan troglodytes GN=DHX16 PE=3 SV=1
Length = 1044
Score = 227 bits (578), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 116/260 (44%), Positives = 161/260 (61%), Gaps = 41/260 (15%)
Query: 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMI 60
E L +P L+ YSV++VDEAHERT+HTD+L GL+K V R
Sbjct: 507 EFLSEPDLASYSVVMVDEAHERTLHTDILFGLIKDVARFR-------------------- 546
Query: 61 LDRENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEIL 120
P LK+++ SA++D FS +F A + GR+FPV+I
Sbjct: 547 ---------------------PELKVLVASATMDTARFSTFFDDAPVFRIPGRRFPVDIF 585
Query: 121 YTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKL 180
YT PE D+L+A ++++ Q+H+ + PGDILVFLTGQEEIE+ ++Q+R +L R+L
Sbjct: 586 YTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIREL 645
Query: 181 VTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYDP 240
+ +PI+++LPS+ Q ++F P G RKV++ATNIAETS+TI GI YV+DPGF K +SY+P
Sbjct: 646 LVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNP 705
Query: 241 VKGMESLIVVPISKAQALQR 260
GMESL V P SKA A QR
Sbjct: 706 RTGMESLTVTPCSKASANQR 725
>sp|P24384|PRP22_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PRP22 PE=1 SV=1
Length = 1145
Score = 224 bits (571), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 161/260 (61%), Gaps = 41/260 (15%)
Query: 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMI 60
EALLDP +S+YSVI++DEAHERTV TDVL LLKK R
Sbjct: 587 EALLDPEMSKYSVIMLDEAHERTVATDVLFALLKKAAIKR-------------------- 626
Query: 61 LDRENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEIL 120
P LK+I+ SA+L++ FSEYF +++ G+ FPVE+L
Sbjct: 627 ---------------------PELKVIVTSATLNSAKFSEYFLNCPIINIPGKTFPVEVL 665
Query: 121 YTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKL 180
Y+ P+ D+++A L + +H++E PGDILVFLTGQEEI+S ++ +R+ L ++ +L
Sbjct: 666 YSQTPQMDYIEAALDCVIDIHINEGPGDILVFLTGQEEIDSCCEILYDRVKTLGDSIGEL 725
Query: 181 VTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYDP 240
+ +P++S+LPSE Q K+F P G RKV+ ATNIAETS+TI GI YV+DPGF K Y+
Sbjct: 726 LILPVYSALPSEIQSKIFEPTPKGSRKVVFATNIAETSITIDGIYYVVDPGFAKINIYNA 785
Query: 241 VKGMESLIVVPISKAQALQR 260
G+E LIV PIS+AQA QR
Sbjct: 786 RAGIEQLIVSPISQAQANQR 805
>sp|P20095|PRP2_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein
PRP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PRP2 PE=1 SV=1
Length = 876
Score = 222 bits (565), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 116/261 (44%), Positives = 160/261 (61%), Gaps = 42/261 (16%)
Query: 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMI 60
E L D LS+YS I++DEAHERT+ TD+L+GLLK + R
Sbjct: 330 EFLTDSKLSKYSCIMIDEAHERTLATDILIGLLKDILPQR-------------------- 369
Query: 61 LDRENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEIL 120
P LKL+I SA+++A+ FSE+F +V GR++PV+I
Sbjct: 370 ---------------------PTLKLLISSATMNAKKFSEFFDNCPIFNVPGRRYPVDIH 408
Query: 121 YTLYPEPDFLDATLITIFQVHLDEA-PGDILVFLTGQEEIESVERLVQERLLQLPEASRK 179
YTL PE +++ A + TIFQ+H ++ PGDILVFLTGQEEIE + ++E + +L +++
Sbjct: 409 YTLQPEANYIHAAITTIFQIHTTQSLPGDILVFLTGQEEIERTKTKLEEIMSKLGSRTKQ 468
Query: 180 LVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYD 239
++ PI+++LP EQQ+K+F P RKV+LATNIAETS+TI GI+YVIDPGFVK SY
Sbjct: 469 MIITPIYANLPQEQQLKIFQPTPENCRKVVLATNIAETSLTIDGIRYVIDPGFVKENSYV 528
Query: 240 PVKGMESLIVVPISKAQALQR 260
P GM L+ VP S+A QR
Sbjct: 529 PSTGMTQLLTVPCSRASVDQR 549
>sp|Q80VY9|DHX33_MOUSE Putative ATP-dependent RNA helicase DHX33 OS=Mus musculus GN=Dhx33
PE=1 SV=1
Length = 698
Score = 219 bits (559), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 115/262 (43%), Positives = 164/262 (62%), Gaps = 39/262 (14%)
Query: 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMI 60
EA+ D L +YS +I+DEAHERT+HTDVL G++K Q R +
Sbjct: 169 EAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKTAQKRRKE------------------ 210
Query: 61 LDRENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEIL 120
+ L PLK+I+MSA++D FS+YF A ++++GRQ P++I
Sbjct: 211 ---------LGKL---------PLKVIVMSATMDVDLFSQYFNRAPVLYLEGRQHPIQIF 252
Query: 121 YTLYPEPDFLDATLITIFQVHLDEAPG--DILVFLTGQEEIESVERLVQERLLQLPEASR 178
YT P+ D+L A L+++FQ+H EAP DILVFLTGQEEIE++ + ++ LP+
Sbjct: 253 YTKQPQQDYLHAALVSVFQIH-QEAPASQDILVFLTGQEEIEAMSKTCRDIARHLPDGCP 311
Query: 179 KLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSY 238
++ +P+++SLP QQ++VF A G+RKVI++TNIAETS+TI GIKYV+D G VKA+ Y
Sbjct: 312 SMLVLPLYASLPYSQQLRVFQGAPKGYRKVIISTNIAETSITITGIKYVVDTGMVKAKKY 371
Query: 239 DPVKGMESLIVVPISKAQALQR 260
+P G+E L V +SK QA QR
Sbjct: 372 NPDSGLEVLAVQRVSKTQAWQR 393
>sp|Q9H6R0|DHX33_HUMAN Putative ATP-dependent RNA helicase DHX33 OS=Homo sapiens GN=DHX33
PE=1 SV=2
Length = 707
Score = 218 bits (555), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 114/262 (43%), Positives = 164/262 (62%), Gaps = 39/262 (14%)
Query: 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMI 60
EA+ D L +YS +I+DEAHERT+HTDVL G++K Q R +
Sbjct: 178 EAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKE------------------ 219
Query: 61 LDRENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEIL 120
+ L PLK+I+MSA++D FS+YF A ++++GRQ P+++
Sbjct: 220 ---------LGKL---------PLKVIVMSATMDVDLFSQYFNGAPVLYLEGRQHPIQVF 261
Query: 121 YTLYPEPDFLDATLITIFQVHLDEAPG--DILVFLTGQEEIESVERLVQERLLQLPEASR 178
YT P+ D+L A L+++FQ+H EAP DILVFLTGQEEIE++ + ++ LP+
Sbjct: 262 YTKQPQNDYLHAALVSVFQIH-QEAPSSQDILVFLTGQEEIEAMSKTCRDIAKHLPDGCP 320
Query: 179 KLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSY 238
++ +P+++SLP QQ++VF A G+RKVI++TNIAETS+TI GIKYV+D G VKA+ Y
Sbjct: 321 AMLVLPLYASLPYAQQLRVFQGAPKGYRKVIISTNIAETSITITGIKYVVDTGMVKAKKY 380
Query: 239 DPVKGMESLIVVPISKAQALQR 260
+P G+E L V +SK QA QR
Sbjct: 381 NPDSGLEVLAVQRVSKTQAWQR 402
>sp|O45244|DHX16_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4
OS=Caenorhabditis elegans GN=mog-4 PE=1 SV=2
Length = 1008
Score = 217 bits (553), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 120/261 (45%), Positives = 157/261 (60%), Gaps = 42/261 (16%)
Query: 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMI 60
E L +P L+ YSV+++DEAHERT+HTD+L GL+K + R
Sbjct: 469 EFLNEPDLASYSVMMIDEAHERTLHTDILFGLVKDIARFRKD------------------ 510
Query: 61 LDRENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEIL 120
LKL+I SA+LDA FS +F A + GR+FPV+I
Sbjct: 511 -----------------------LKLLISSATLDAEKFSSFFDDAPIFRIPGRRFPVDIY 547
Query: 121 YTLYPEPDFLDATLITIFQVHLDEA-PGDILVFLTGQEEIESVERLVQERLLQLPEASRK 179
YT PE D++DA ++TI Q+HL + PGDILVFLTGQEEIE+V+ + ER L ++
Sbjct: 548 YTQAPEADYVDAAIVTIMQIHLTQPLPGDILVFLTGQEEIETVQEALMERSKALGSKIKE 607
Query: 180 LVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYD 239
L+ +P++++LPS+ Q K+F P RKV+LATNIAETSVTI GI YVIDPGF K S+D
Sbjct: 608 LIPLPVYANLPSDLQAKIFEPTPKDARKVVLATNIAETSVTIDGINYVIDPGFSKQNSFD 667
Query: 240 PVKGMESLIVVPISKAQALQR 260
G+E L VV ISKA A QR
Sbjct: 668 ARSGVEHLHVVTISKAAANQR 688
>sp|Q54MH3|DHX16_DICDI Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Dictyostelium discoideum GN=dhx16 PE=3 SV=1
Length = 1106
Score = 217 bits (552), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 113/260 (43%), Positives = 154/260 (59%), Gaps = 41/260 (15%)
Query: 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMI 60
E L P L+ YSV+I+DEAHERT+HTD+L GLLK + R
Sbjct: 571 EFLTAPDLASYSVLIIDEAHERTLHTDILFGLLKDITRFR-------------------- 610
Query: 61 LDRENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEIL 120
P LKL+I SA++DA FS+YF A ++ GR++ V
Sbjct: 611 ---------------------PDLKLLISSATMDAERFSDYFDGAPTFNIPGRKYEVTTH 649
Query: 121 YTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKL 180
YT PE D+LDA ++T+ Q+H+ E GDILVFLTGQEE++ ++Q R L ++L
Sbjct: 650 YTQAPEADYLDAAVVTVLQIHITEPLGDILVFLTGQEEVDQAAEMLQTRTRGLGTKIKEL 709
Query: 181 VTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYDP 240
+ I+S+LP++ Q K+F P RKV+LATNIAETS+TI GI YVIDPGF K + ++P
Sbjct: 710 IITRIYSTLPTDLQAKIFEPTPPNARKVVLATNIAETSLTIDGIIYVIDPGFCKQKMFNP 769
Query: 241 VKGMESLIVVPISKAQALQR 260
GMESL++ P+S+A A QR
Sbjct: 770 RTGMESLVITPVSRASANQR 789
>sp|Q10752|CDC28_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein
cdc28 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=cdc28 PE=3 SV=2
Length = 1055
Score = 212 bits (539), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 115/260 (44%), Positives = 154/260 (59%), Gaps = 41/260 (15%)
Query: 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMI 60
E L +P L+ YSVII+DEAHERT+HTD+L GL+K + R
Sbjct: 523 EFLTEPDLASYSVIIIDEAHERTLHTDILFGLVKDIARFR-------------------- 562
Query: 61 LDRENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEIL 120
P LK++I SA++DA FS YF A +V GR++PV+I
Sbjct: 563 ---------------------PDLKVLISSATIDAEKFSAYFDEAPVFYVPGRRYPVDIY 601
Query: 121 YTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKL 180
YT PE +++ A + TI Q+H + GDILVFLTGQ+EIE + +QE L + ++
Sbjct: 602 YTPQPEANYIQAAITTILQIHTTQPAGDILVFLTGQDEIELMSENMQELCRILGKRIPEI 661
Query: 181 VTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYDP 240
+ PI+++LPSE Q K+F P G RKV+LATNIAETS+TI G+ +VID GFVK Y+P
Sbjct: 662 ILCPIYANLPSELQAKIFDPTPPGARKVVLATNIAETSITIDGVNFVIDSGFVKQNMYNP 721
Query: 241 VKGMESLIVVPISKAQALQR 260
GMESL+ VP S+A A QR
Sbjct: 722 RTGMESLVSVPCSRASADQR 741
>sp|O22899|DHX15_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1
Length = 729
Score = 211 bits (537), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 120/267 (44%), Positives = 154/267 (57%), Gaps = 48/267 (17%)
Query: 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMI 60
EA+ DP L RY VII+DEAHERT+ TDVL GLLK+V R
Sbjct: 175 EAMADPLLERYKVIILDEAHERTLATDVLFGLLKEVLRNR-------------------- 214
Query: 61 LDRENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEIL 120
P LKL++MSA+L+A F EYF A + V GR PVEI
Sbjct: 215 ---------------------PDLKLVVMSATLEAEKFQEYFSGAPLMKVPGRLHPVEIF 253
Query: 121 YTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKL 180
YT PE D+L+A + T+ Q+H+ E PGDILVFLTG+EEIE R + + + L + +
Sbjct: 254 YTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKINKEVSNLGDQVGPV 313
Query: 181 VTVPIFSSLPSEQQMKVFAPA-------AAGFRKVILATNIAETSVTIPGIKYVIDPGFV 233
VP++S+LP Q K+F PA RK++++TNIAETS+TI GI YVIDPGF
Sbjct: 314 KVVPLYSTLPPAMQQKIFDPAPVPLTEGGPAGRKIVVSTNIAETSLTIDGIVYVIDPGFA 373
Query: 234 KARSYDPVKGMESLIVVPISKAQALQR 260
K + Y+P +ESL+V PISKA A QR
Sbjct: 374 KQKVYNPRIRVESLLVSPISKASAHQR 400
>sp|O42945|DHX15_SCHPO Probable pre-mRNA-splicing factor ATP-dependent RNA helicase prp43
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp43 PE=3 SV=1
Length = 735
Score = 207 bits (526), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 119/267 (44%), Positives = 158/267 (59%), Gaps = 48/267 (17%)
Query: 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMI 60
EA+ D LSRYS II+DEAHERT+ TD+L+GL+K++ R
Sbjct: 181 EAMTDHMLSRYSCIILDEAHERTLATDILMGLMKRLATRR-------------------- 220
Query: 61 LDRENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEIL 120
P LK+I+MSA+LDA+ F +YF A + V GR +PVEI
Sbjct: 221 ---------------------PDLKIIVMSATLDAKKFQKYFFDAPLLAVPGRTYPVEIY 259
Query: 121 YTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPE--ASR 178
YT PE D+L+A L T+ Q+H++E PGDILVFLTG+EEIE R + L A+
Sbjct: 260 YTQEPERDYLEAALRTVLQIHVEEGPGDILVFLTGEEEIEDACRKITLEADDLVREGAAG 319
Query: 179 KLVTVPIFSSLPSEQQMKVFAP----AAAGF-RKVILATNIAETSVTIPGIKYVIDPGFV 233
L P++ SLP QQ ++F P +G+ RKV+++TNIAETS+TI GI YV+DPGF
Sbjct: 320 PLKVYPLYGSLPPNQQQRIFEPTPEDTKSGYGRKVVISTNIAETSLTIDGIVYVVDPGFS 379
Query: 234 KARSYDPVKGMESLIVVPISKAQALQR 260
K + Y+P +ESL+V PISKA A QR
Sbjct: 380 KQKIYNPRIRVESLLVSPISKASAQQR 406
>sp|Q9H5Z1|DHX35_HUMAN Probable ATP-dependent RNA helicase DHX35 OS=Homo sapiens GN=DHX35
PE=1 SV=2
Length = 703
Score = 200 bits (508), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 111/272 (40%), Positives = 158/272 (58%), Gaps = 53/272 (19%)
Query: 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMI 60
E ++DP L++YSVI++DEAHERT++TD+ +GLLKK+Q R
Sbjct: 160 EMMVDPLLTKYSVIMLDEAHERTLYTDIAIGLLKKIQKKRGD------------------ 201
Query: 61 LDRENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKA----------VHV 110
L+LI+ SA+LDA F ++F + + V
Sbjct: 202 -----------------------LRLIVASATLDADKFRDFFNQNETSDPARDTCVILTV 238
Query: 111 QGRQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLV--QE 168
+GR FPV+I Y P PD++ +T+ T+ ++H E GD+L FLTGQEE+E+V ++ Q
Sbjct: 239 EGRTFPVDIFYLQSPVPDYIKSTVETVVKIHQTEGDGDVLAFLTGQEEVETVVSMLIEQA 298
Query: 169 RLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVI 228
R L R L +P+++ LPS +QMKVF + RKVI+ATN+AETS+TI GI YVI
Sbjct: 299 RALARTGMKRHLRVLPMYAGLPSFEQMKVFERVSRSVRKVIVATNVAETSITISGIVYVI 358
Query: 229 DPGFVKARSYDPVKGMESLIVVPISKAQALQR 260
D GFVK R+Y+P +E L+VVP+S+A A QR
Sbjct: 359 DCGFVKLRAYNPRTAIECLVVVPVSQASANQR 390
>sp|Q5RBD4|DHX35_PONAB Probable ATP-dependent RNA helicase DHX35 OS=Pongo abelii GN=DHX35
PE=2 SV=1
Length = 720
Score = 199 bits (507), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 112/272 (41%), Positives = 156/272 (57%), Gaps = 53/272 (19%)
Query: 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMI 60
E ++DP L++YSVI++DEAHERT++TD+ +GLLKK+Q R
Sbjct: 160 EMMVDPLLTKYSVIMLDEAHERTLYTDIAIGLLKKIQKKRGD------------------ 201
Query: 61 LDRENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFG----------CAKAVHV 110
L+LI+ SA+LDA F ++F + V
Sbjct: 202 -----------------------LRLIVASATLDADKFRDFFNQNETSDPARDTCVILTV 238
Query: 111 QGRQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLV--QE 168
GR FPV+I Y P PD++ +T+ T+ ++H E GDIL FLTGQEE+E+V ++ Q
Sbjct: 239 GGRTFPVDIFYLQSPVPDYIKSTVETVVKIHQTEGDGDILAFLTGQEEVETVVSMLIEQA 298
Query: 169 RLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVI 228
R L R L +P+++ LPS +QMKVF + RKVI+ATN+AETS+TI GI YVI
Sbjct: 299 RALARTGMKRHLRVLPMYAGLPSFEQMKVFERVSRSVRKVIVATNVAETSITISGIVYVI 358
Query: 229 DPGFVKARSYDPVKGMESLIVVPISKAQALQR 260
D GFVK R+Y+P +E L+VVP+S+A A QR
Sbjct: 359 DCGFVKLRAYNPRTAIECLVVVPVSQASANQR 390
>sp|O17438|DHX15_STRPU Putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
(Fragment) OS=Strongylocentrotus purpuratus GN=PRP1 PE=2
SV=1
Length = 455
Score = 197 bits (501), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 114/267 (42%), Positives = 154/267 (57%), Gaps = 48/267 (17%)
Query: 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMI 60
E + DP L RY VI++DEAHERTV TD+L+GLLK+V+ RS
Sbjct: 12 EGMTDPLLERYGVILLDEAHERTVATDILMGLLKEVEKQRSD------------------ 53
Query: 61 LDRENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEIL 120
LKL++MSA+LDA F YF A + V GR PVEI
Sbjct: 54 -----------------------LKLVVMSATLDAGKFQHYFDNAPLMTVPGRTHPVEIF 90
Query: 121 YTLYPEPDFLDATLITIFQVHL-DEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRK 179
YT PE D+L+A + T+ Q+H+ +E GD+L+FLTGQEEIE + ++ + L
Sbjct: 91 YTPEPERDYLEAAIRTVVQIHMCEEVEGDVLLFLTGQEEIEEACKRIKREVDNLGPEVGD 150
Query: 180 LVTVPIFSSLPSEQQMKVFAPA------AAGFRKVILATNIAETSVTIPGIKYVIDPGFV 233
L T+P++S+LP Q ++F A A RKV+++TNIAETS+TI G+ +VIDPGF
Sbjct: 151 LKTIPLYSTLPPAMQQRIFEHAPPNKANGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFA 210
Query: 234 KARSYDPVKGMESLIVVPISKAQALQR 260
K + Y+P +ESL+V PISKA A QR
Sbjct: 211 KQKVYNPRIRVESLLVSPISKASAQQR 237
>sp|Q9P774|PRP16_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp16 PE=3 SV=2
Length = 1173
Score = 197 bits (500), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 104/260 (40%), Positives = 160/260 (61%), Gaps = 42/260 (16%)
Query: 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMI 60
E+L+ L +YSVII+DEAHER+++TD+L+GLLKKV
Sbjct: 596 ESLMQNNLEKYSVIIMDEAHERSLNTDILMGLLKKV------------------------ 631
Query: 61 LDRENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEIL 120
L R D +KL++ SA+++++ FS++FG A + GR +PV+I+
Sbjct: 632 LSRRRD-----------------IKLLVTSATMNSQKFSDFFGGAPQFTIPGRTYPVDIM 674
Query: 121 YTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKL 180
+ P D+++A + + Q+HL + GDILVF+TGQE+IE+ ++ +RL QL +A R L
Sbjct: 675 FAKAPCSDYVEAAVRQVLQIHLSQPAGDILVFMTGQEDIEATCEIIADRLNQLHDAPR-L 733
Query: 181 VTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYDP 240
+PI+S +P++ Q K+F A G RKV++ATNIAETS+T+ GI YV+D G+ K + Y+
Sbjct: 734 SILPIYSQMPADLQAKIFDSAEPGVRKVVVATNIAETSLTVHGISYVVDTGYCKLKMYNS 793
Query: 241 VKGMESLIVVPISKAQALQR 260
G+++L V PIS+A A QR
Sbjct: 794 KLGIDTLQVTPISQANANQR 813
>sp|P53131|PRP43_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PRP43 PE=1 SV=1
Length = 767
Score = 194 bits (492), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 116/267 (43%), Positives = 150/267 (56%), Gaps = 48/267 (17%)
Query: 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMI 60
EA+ D LSRYS II+DEAHERT+ TD+L+GLLK+V R
Sbjct: 199 EAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-------------------- 238
Query: 61 LDRENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEIL 120
P LK+IIMSA+LDA F YF A + V GR +PVE+
Sbjct: 239 ---------------------PDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELY 277
Query: 121 YTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQL--PEASR 178
YT + D+LD+ + T+ Q+H E GDIL+FLTG++EIE R + QL E
Sbjct: 278 YTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCG 337
Query: 179 KLVTVPIFSSLPSEQQMKVFAPAAAGF-----RKVILATNIAETSVTIPGIKYVIDPGFV 233
L P++ SLP QQ ++F PA RKV+++TNIAETS+TI GI YV+DPGF
Sbjct: 338 PLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFS 397
Query: 234 KARSYDPVKGMESLIVVPISKAQALQR 260
K + Y+P +ESL+V PISKA A QR
Sbjct: 398 KQKVYNPRIRVESLLVSPISKASAQQR 424
>sp|Q17R09|PRP16_BOVIN Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Bos
taurus GN=DHX38 PE=2 SV=1
Length = 1227
Score = 192 bits (487), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 107/260 (41%), Positives = 151/260 (58%), Gaps = 42/260 (16%)
Query: 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMI 60
E+L + L YS II+DEAHER+++TDVL GLL++V RS
Sbjct: 636 ESLREADLDHYSAIIMDEAHERSLNTDVLFGLLREVVARRSD------------------ 677
Query: 61 LDRENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEIL 120
LKLI+ SA++DA F+ +FG H+ GR FPV+IL
Sbjct: 678 -----------------------LKLIVTSATMDAEKFASFFGNVPIFHIPGRTFPVDIL 714
Query: 121 YTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKL 180
++ P+ D+++A + QVHL APGDIL+F+ GQE+IE + E L +L E + L
Sbjct: 715 FSKTPQEDYVEAAVKQSLQVHLSGAPGDILIFMPGQEDIEVTSDQIVEHLEEL-ENAPAL 773
Query: 181 VTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYDP 240
+PI+S LPS+ Q K+F A G RK I+ATNIAETS+T+ GI +VID G+ K + ++P
Sbjct: 774 AVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNP 833
Query: 241 VKGMESLIVVPISKAQALQR 260
GM++L + PIS+A A QR
Sbjct: 834 RIGMDALQIYPISQANANQR 853
>sp|Q92620|PRP16_HUMAN Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo
sapiens GN=DHX38 PE=1 SV=2
Length = 1227
Score = 191 bits (486), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 107/260 (41%), Positives = 151/260 (58%), Gaps = 42/260 (16%)
Query: 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMI 60
E+L + L YS II+DEAHER+++TDVL GLL++V RS
Sbjct: 636 ESLREADLDHYSAIIMDEAHERSLNTDVLFGLLREVVARRSD------------------ 677
Query: 61 LDRENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEIL 120
LKLI+ SA++DA F+ +FG H+ GR FPV+IL
Sbjct: 678 -----------------------LKLIVTSATMDAEKFAAFFGNVPIFHIPGRTFPVDIL 714
Query: 121 YTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKL 180
++ P+ D+++A + QVHL APGDIL+F+ GQE+IE + E L +L E + L
Sbjct: 715 FSKTPQEDYVEAAVKQSLQVHLSGAPGDILIFMPGQEDIEVTSDQIVEHLEEL-ENAPAL 773
Query: 181 VTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYDP 240
+PI+S LPS+ Q K+F A G RK I+ATNIAETS+T+ GI +VID G+ K + ++P
Sbjct: 774 AVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNP 833
Query: 241 VKGMESLIVVPISKAQALQR 260
GM++L + PIS+A A QR
Sbjct: 834 RIGMDALQIYPISQANANQR 853
>sp|P15938|PRP16_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PRP16 PE=1 SV=2
Length = 1071
Score = 189 bits (480), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/273 (39%), Positives = 158/273 (57%), Gaps = 56/273 (20%)
Query: 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMI 60
E LLD L +YS +I+DEAHER+++TD+LLG K ++
Sbjct: 457 ETLLDDTLDKYSCVIIDEAHERSLNTDILLGFFK------------------------IL 492
Query: 61 LDRENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEIL 120
L R D LKLII SA+++A+ FS +FG A + GR FPV+ +
Sbjct: 493 LARRRD-----------------LKLIITSATMNAKKFSAFFGNAPQFTIPGRTFPVQTI 535
Query: 121 YTLYPEPDFLDATLITIFQVHL--DEAPGDILVFLTGQEEIESVERLVQERLLQLPEASR 178
YT P D+++A + ++HL D + GDIL+F+TGQE+IE+ +QE+ LQ+ S+
Sbjct: 536 YTSNPVQDYVEAAVSQAVKIHLANDCSSGDILIFMTGQEDIETTFDTLQEKFLQV--YSK 593
Query: 179 KLVT-----------VPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYV 227
K T +PI+S+LP++ Q K+F RK+I+ATNIAETS+TI GI+YV
Sbjct: 594 KFGTANFEEINDIEILPIYSALPADLQFKIFQDLHGTKRKIIIATNIAETSLTIKGIRYV 653
Query: 228 IDPGFVKARSYDPVKGMESLIVVPISKAQALQR 260
ID G+ K + Y+P G++SL++ PISKA A QR
Sbjct: 654 IDCGYSKLKVYNPKIGLDSLVITPISKANADQR 686
>sp|Q20875|DHX15_CAEEL Putative pre-mRNA-splicing factor ATP-dependent RNA helicase
F56D2.6 OS=Caenorhabditis elegans GN=F56D2.6 PE=2 SV=1
Length = 739
Score = 189 bits (479), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/267 (39%), Positives = 152/267 (56%), Gaps = 48/267 (17%)
Query: 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMI 60
EA+ P L +Y V+I+DEAHERT+ TD+L+GL+K++ R+
Sbjct: 188 EAMNSPLLDKYKVLILDEAHERTLATDILMGLIKEIVRNRAD------------------ 229
Query: 61 LDRENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEIL 120
+K++IMSA+LDA F YF + V GR FPVEI
Sbjct: 230 -----------------------IKVVIMSATLDAGKFQRYFEDCPLLSVPGRTFPVEIF 266
Query: 121 YTLYPEPDFLDATLITIFQVHL-DEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRK 179
+T E D+L+A + T+ Q+H+ +E GDIL+FLTGQEEIE + + + L +
Sbjct: 267 FTPNAEKDYLEAAIRTVIQIHMVEEVEGDILLFLTGQEEIEEACKRIDREIQALGADAGA 326
Query: 180 LVTVPIFSSLPSEQQMKVFAPA------AAGFRKVILATNIAETSVTIPGIKYVIDPGFV 233
L +P++S+LP Q ++F PA A RK +++TNIAETS+TI G+ +VIDPGF
Sbjct: 327 LSCIPLYSTLPPAAQQRIFEPAPPNRPNGAISRKCVISTNIAETSLTIDGVVFVIDPGFS 386
Query: 234 KARSYDPVKGMESLIVVPISKAQALQR 260
K + Y+P +ESL+V PISKA A+QR
Sbjct: 387 KQKVYNPRIRVESLLVCPISKASAMQR 413
>sp|Q54NJ4|DHX15_DICDI Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15
OS=Dictyostelium discoideum GN=dhx15 PE=3 SV=1
Length = 727
Score = 188 bits (477), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 114/264 (43%), Positives = 153/264 (57%), Gaps = 53/264 (20%)
Query: 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMI 60
E++ DP L++Y VII+DEAHERT+ TD+L GL+K I
Sbjct: 182 ESMSDPTLNKYDVIILDEAHERTLSTDILFGLIKD------------------------I 217
Query: 61 LDRENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEIL 120
L R D LKLI+MSA+L+A F +YF A + V GR PVEI
Sbjct: 218 LKRRKD-----------------LKLIVMSATLEAGKFQKYFENAPLIKVPGRLHPVEIF 260
Query: 121 YTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIE----SVERLVQERLLQLPEA 176
YT D+L++ + T+ +H +E GDILVFLTG+EEIE ++R +ER LP
Sbjct: 261 YTEEAAKDYLESAVRTVIDIHTNEGTGDILVFLTGEEEIEDTCAKIQRETRER--GLPP- 317
Query: 177 SRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKAR 236
+ T+P++SSLP QQ K+F RK I++TNIAETS+TI GI +V+DPGF K +
Sbjct: 318 ---MKTLPLYSSLPIYQQSKIFDTCKE--RKCIVSTNIAETSLTIDGIVFVVDPGFSKQK 372
Query: 237 SYDPVKGMESLIVVPISKAQALQR 260
+Y+P +ESL+V PISKA A QR
Sbjct: 373 TYNPRSRVESLLVAPISKASANQR 396
>sp|O35286|DHX15_MOUSE Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
OS=Mus musculus GN=Dhx15 PE=2 SV=2
Length = 795
Score = 187 bits (476), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 109/267 (40%), Positives = 153/267 (57%), Gaps = 48/267 (17%)
Query: 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMI 60
EA+ DP L RY VII+DEAHERT+ TD+L+G+LK+V RS
Sbjct: 244 EAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRSD------------------ 285
Query: 61 LDRENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEIL 120
LK+I+MSA+LDA F YF + + GR PVEI
Sbjct: 286 -----------------------LKVIVMSATLDAGKFQIYFDNCPLLTIPGRTHPVEIF 322
Query: 121 YTLYPEPDFLDATLITIFQVHL-DEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRK 179
YT PE D+L+A + T+ Q+H+ +E GD+L+FLTGQEEI+ + ++ + L
Sbjct: 323 YTPEPERDYLEAAIRTVIQIHMCEEEEGDLLLFLTGQEEIDEACKRIKREVDDLGPEVGD 382
Query: 180 LVTVPIFSSLPSEQQMKVFAPA------AAGFRKVILATNIAETSVTIPGIKYVIDPGFV 233
+ +P++S+LP +QQ ++F P A RKV+++TNIAETS+TI G+ +VIDPGF
Sbjct: 383 IKIIPLYSTLPPQQQQRIFEPPPPKKQNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFA 442
Query: 234 KARSYDPVKGMESLIVVPISKAQALQR 260
K + Y+P +ESL+V ISKA A QR
Sbjct: 443 KQKVYNPRIRVESLLVTAISKASAQQR 469
>sp|O43143|DHX15_HUMAN Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
OS=Homo sapiens GN=DHX15 PE=1 SV=2
Length = 795
Score = 187 bits (476), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 109/267 (40%), Positives = 153/267 (57%), Gaps = 48/267 (17%)
Query: 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMI 60
EA+ DP L RY VII+DEAHERT+ TD+L+G+LK+V RS
Sbjct: 244 EAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRSD------------------ 285
Query: 61 LDRENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEIL 120
LK+I+MSA+LDA F YF + + GR PVEI
Sbjct: 286 -----------------------LKVIVMSATLDAGKFQIYFDNCPLLTIPGRTHPVEIF 322
Query: 121 YTLYPEPDFLDATLITIFQVHL-DEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRK 179
YT PE D+L+A + T+ Q+H+ +E GD+L+FLTGQEEI+ + ++ + L
Sbjct: 323 YTPEPERDYLEAAIRTVIQIHMCEEEEGDLLLFLTGQEEIDEACKRIKREVDDLGPEVGD 382
Query: 180 LVTVPIFSSLPSEQQMKVFAPA------AAGFRKVILATNIAETSVTIPGIKYVIDPGFV 233
+ +P++S+LP +QQ ++F P A RKV+++TNIAETS+TI G+ +VIDPGF
Sbjct: 383 IKIIPLYSTLPPQQQQRIFEPPPPKKQNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFA 442
Query: 234 KARSYDPVKGMESLIVVPISKAQALQR 260
K + Y+P +ESL+V ISKA A QR
Sbjct: 443 KQKVYNPRIRVESLLVTAISKASAQQR 469
>sp|Q5RAZ4|DHX15_PONAB Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
OS=Pongo abelii GN=DHX15 PE=2 SV=2
Length = 795
Score = 187 bits (476), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 109/267 (40%), Positives = 153/267 (57%), Gaps = 48/267 (17%)
Query: 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMI 60
EA+ DP L RY VII+DEAHERT+ TD+L+G+LK+V RS
Sbjct: 244 EAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRSD------------------ 285
Query: 61 LDRENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEIL 120
LK+I+MSA+LDA F YF + + GR PVEI
Sbjct: 286 -----------------------LKVIVMSATLDAGKFQIYFDNCPLLTIPGRTHPVEIF 322
Query: 121 YTLYPEPDFLDATLITIFQVHL-DEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRK 179
YT PE D+L+A + T+ Q+H+ +E GD+L+FLTGQEEI+ + ++ + L
Sbjct: 323 YTPEPERDYLEAAIRTVIQIHMCEEEEGDLLLFLTGQEEIDEACKRIKREVDDLGPEVGD 382
Query: 180 LVTVPIFSSLPSEQQMKVFAPA------AAGFRKVILATNIAETSVTIPGIKYVIDPGFV 233
+ +P++S+LP +QQ ++F P A RKV+++TNIAETS+TI G+ +VIDPGF
Sbjct: 383 IKIIPLYSTLPPQQQQRIFEPPPPKKQNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFA 442
Query: 234 KARSYDPVKGMESLIVVPISKAQALQR 260
K + Y+P +ESL+V ISKA A QR
Sbjct: 443 KQKVYNPRIRVESLLVTAISKASAQQR 469
>sp|P34498|MOG1_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1
OS=Caenorhabditis elegans GN=mog-1 PE=1 SV=2
Length = 1131
Score = 187 bits (476), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 108/262 (41%), Positives = 152/262 (58%), Gaps = 45/262 (17%)
Query: 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMI 60
E L D L +YS II+DEAHER+++TDVL GLL++V +K AD
Sbjct: 545 ECLGDGSLDQYSAIIMDEAHERSLNTDVLFGLLREVI---AKRAD--------------- 586
Query: 61 LDRENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFG--CAKAVHVQGRQFPVE 118
LKLI+ SA++DA F+++FG C + GR FPVE
Sbjct: 587 -----------------------LKLIVTSATMDADKFADFFGGNCP-TFTIPGRTFPVE 622
Query: 119 ILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASR 178
+ + P D++DA + +HL GDIL+F+ GQE+IE +++E+L +L EA
Sbjct: 623 LFHARTPVEDYVDAAVKQAVTIHLGGMDGDILIFMPGQEDIECTCEMIKEKLGELDEAP- 681
Query: 179 KLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSY 238
L +PI+S LPS+ Q K+F A G RK I+ATNIAETS+T+ GI +VIDPGF K + Y
Sbjct: 682 PLAVLPIYSQLPSDLQAKIFQRAPGGMRKAIVATNIAETSLTVDGILFVIDPGFCKMKVY 741
Query: 239 DPVKGMESLIVVPISKAQALQR 260
+P GM++L + P+S+A A QR
Sbjct: 742 NPRIGMDALSIFPVSQASANQR 763
>sp|Q9HE06|YK99_SCHPO Putative pre-mRNA-splicing factor ATP-dependent RNA helicase
C20H4.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=SPAC20H4.09 PE=3 SV=1
Length = 647
Score = 184 bits (467), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 101/262 (38%), Positives = 150/262 (57%), Gaps = 43/262 (16%)
Query: 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMI 60
E DP L RYS++I+DE HERT+ TD+LLG+LK+ I
Sbjct: 130 EIFFDPLLERYSIVILDEVHERTLSTDLLLGVLKR------------------------I 165
Query: 61 LDRENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAK--AVHVQGRQFPVE 118
L++ ND +L++ SAS+DA S++FG K + ++G+ FPVE
Sbjct: 166 LEKRND-----------------FRLVLSSASVDANKLSQFFGQDKVCTMSIEGKLFPVE 208
Query: 119 ILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASR 178
L+ P +++D+ + T+ ++ PGDILVFL+G++EIE + +++ L+ E +
Sbjct: 209 TLFLQKPTENYVDSAIETVININSTYPPGDILVFLSGRKEIEYCIKKIEDSLIHASEDCQ 268
Query: 179 KLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSY 238
LV +P+ + L ++QM+VF FRKVI +TNIAETS+TI GI YV+D GF K R Y
Sbjct: 269 TLVPLPLHAGLTVDEQMRVFNIYDGDFRKVIFSTNIAETSITIDGIVYVVDSGFNKQRIY 328
Query: 239 DPVKGMESLIVVPISKAQALQR 260
+P LI VPISK+ A+QR
Sbjct: 329 NPYTRTSKLINVPISKSSAIQR 350
>sp|Q9BKQ8|DHX35_CAEEL Probable ATP-dependent RNA helicase DHX35 homolog OS=Caenorhabditis
elegans GN=Y67D2.6 PE=3 SV=1
Length = 732
Score = 182 bits (462), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 107/270 (39%), Positives = 148/270 (54%), Gaps = 52/270 (19%)
Query: 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMI 60
E L DP LS+YS+I++DEAHER+ +TD+LLGLL+K+ R
Sbjct: 182 EILADPLLSKYSIIMIDEAHERSCNTDILLGLLRKIIQIR-------------------- 221
Query: 61 LDRENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYF----------GCAKAVHV 110
ND L++I+ SA+LDA F ++F A + V
Sbjct: 222 ----ND-----------------LRIIVSSATLDAELFKDFFEMNETGNSDKDTAGIISV 260
Query: 111 QGRQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERL 170
+GR PV + +T PD+ + + T+ +H E PGDILVFLTGQ+E+E V ++E
Sbjct: 261 EGRTHPVAVHHTKTSVPDYCQSAVDTVINIHKHENPGDILVFLTGQDEVEDVCEKLRELA 320
Query: 171 LQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDP 230
L R L VP + +LP+ +QMK F G RKV++ATNIAE S+TIPGI YVID
Sbjct: 321 GNLKNCDR-LWVVPCYGALPAREQMKAFDSTPHGTRKVVVATNIAEASITIPGICYVIDT 379
Query: 231 GFVKARSYDPVKGMESLIVVPISKAQALQR 260
G+VK R+ G+E+L+ V +SKA A QR
Sbjct: 380 GYVKLRAQHAANGVETLMRVTVSKASAEQR 409
>sp|P36009|DHR2_YEAST Probable ATP-dependent RNA helicase DHR2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DHR2 PE=1
SV=1
Length = 735
Score = 162 bits (410), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 144/263 (54%), Gaps = 44/263 (16%)
Query: 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKK-VQNARSKSADGHSNGNNKNADSDM 59
E +++ L YSVI++DEAHERTV TD++LG LK +Q R
Sbjct: 187 ELMMNSDLREYSVIVIDEAHERTVLTDLILGFLKSLIQGPR------------------- 227
Query: 60 ILDRENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEI 119
P L++I+MSA+L A FSE+F A + V+GR+F V+
Sbjct: 228 ----------------------PDLRIIVMSATLQAEKFSEFFNNAPILFVEGRKFDVKQ 265
Query: 120 LYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRK 179
Y P D +DA + Q++ E GDIL FL GQEEI+ ++++ + + +
Sbjct: 266 YYLKAPTDDIVDAVIRCCIQINQGEELGDILCFLPGQEEIDKAVTIMEKIAKYVSDEAPV 325
Query: 180 --LVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARS 237
+V P++++LP+ QQ VFAP RKV+ +TNIAETSVTI G+K+V+D G K +
Sbjct: 326 PLIVPYPLYAALPAVQQSLVFAPIKGFKRKVVFSTNIAETSVTISGVKFVVDSGLRKVKV 385
Query: 238 YDPVKGMESLIVVPISKAQALQR 260
+ G+ +L+ VPIS+A A+QR
Sbjct: 386 WRHQLGLATLLTVPISQASAMQR 408
>sp|Q6PE54|DHX40_MOUSE Probable ATP-dependent RNA helicase DHX40 OS=Mus musculus GN=Dhx40
PE=2 SV=1
Length = 779
Score = 159 bits (403), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/275 (36%), Positives = 146/275 (53%), Gaps = 57/275 (20%)
Query: 3 LLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILD 62
L DP LS++SVII+DEAHERT+ TD+L GLLKK+ +S + H
Sbjct: 159 LGDPNLSKFSVIILDEAHERTLTTDILFGLLKKLFQDKSPNRKEH--------------- 203
Query: 63 RENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYT 122
LK+++MSA+++ S +FG + GR +PV +
Sbjct: 204 ---------------------LKVVVMSATMELAKLSAFFGNCPIFDIPGRLYPVREKFC 242
Query: 123 LYPEPD------FLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEA 176
P ++ A + +HL+E GDILVFLTGQ EIE L L Q+ E+
Sbjct: 243 NLIGPRDRENTAYIQAIVKVTMDIHLNEMAGDILVFLTGQFEIEKSCEL----LFQMAES 298
Query: 177 SR-----------KLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIK 225
L+ +P + S+ ++QQ ++F P G RK +++TNI+ TS+TI GI+
Sbjct: 299 VDYDYDVQDTTLDGLLILPCYGSMTTDQQRRIFLPPPPGIRKCVISTNISATSLTIDGIR 358
Query: 226 YVIDPGFVKARSYDPVKGMESLIVVPISKAQALQR 260
YV+D GFVK +++P G++ L VVPISK++ALQR
Sbjct: 359 YVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQR 393
>sp|Q5R864|DHX40_PONAB Probable ATP-dependent RNA helicase DHX40 OS=Pongo abelii GN=DHX40
PE=2 SV=1
Length = 779
Score = 159 bits (401), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/275 (35%), Positives = 146/275 (53%), Gaps = 57/275 (20%)
Query: 3 LLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILD 62
L DP L+++SVII+DEAHERT+ TD+L GLLKK+ +S + H
Sbjct: 159 LGDPNLTKFSVIILDEAHERTLTTDILFGLLKKLFQEKSPNRKEH--------------- 203
Query: 63 RENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYT 122
LK+++MSA+++ S +FG + GR +PV +
Sbjct: 204 ---------------------LKVVVMSATMELAKLSAFFGNCPIFDIPGRLYPVREKFC 242
Query: 123 LYPEPD------FLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEA 176
P ++ A + +HL+E GDILVFLTGQ EIE L L Q+ E+
Sbjct: 243 NLIGPRDRENTAYIQAIVKVTMDIHLNEMAGDILVFLTGQFEIEKSCEL----LFQMAES 298
Query: 177 SR-----------KLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIK 225
L+ +P + S+ ++QQ ++F P G RK +++TNI+ TS+TI GI+
Sbjct: 299 VDYDYDVQDTTLDGLLILPCYGSMTTDQQRRIFLPPPPGIRKCVISTNISATSLTIDGIR 358
Query: 226 YVIDPGFVKARSYDPVKGMESLIVVPISKAQALQR 260
YV+D GFVK +++P G++ L VVPISK++ALQR
Sbjct: 359 YVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQR 393
>sp|Q8IX18|DHX40_HUMAN Probable ATP-dependent RNA helicase DHX40 OS=Homo sapiens GN=DHX40
PE=1 SV=2
Length = 779
Score = 159 bits (401), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/275 (36%), Positives = 147/275 (53%), Gaps = 57/275 (20%)
Query: 3 LLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILD 62
L DP L+++SVII+DEAHERT+ TD+L GLLKK+ +S + H
Sbjct: 159 LGDPNLTKFSVIILDEAHERTLTTDILFGLLKKLFQEKSPNRKEH--------------- 203
Query: 63 RENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPV-EILY 121
LK+++MSA+++ S +FG + GR +PV E
Sbjct: 204 ---------------------LKVVVMSATMELAKLSAFFGNCPIFDIPGRLYPVREKFC 242
Query: 122 TLYPEPD-----FLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEA 176
L D ++ A + +HL+E GDILVFLTGQ EIE L L Q+ E+
Sbjct: 243 NLIGPRDRENTAYIQAIVKVTMDIHLNEMAGDILVFLTGQFEIEKSCEL----LFQMAES 298
Query: 177 SR-----------KLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIK 225
L+ +P + S+ ++QQ ++F P G RK +++TNI+ TS+TI GI+
Sbjct: 299 VDYDYDVQDTTLDGLLILPCYGSMTTDQQRRIFLPPPPGIRKCVISTNISATSLTIDGIR 358
Query: 226 YVIDPGFVKARSYDPVKGMESLIVVPISKAQALQR 260
YV+D GFVK +++P G++ L VVPISK++ALQR
Sbjct: 359 YVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQR 393
>sp|Q5XI69|DHX40_RAT Probable ATP-dependent RNA helicase DHX40 OS=Rattus norvegicus
GN=Dhx40 PE=2 SV=1
Length = 779
Score = 158 bits (400), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 98/275 (35%), Positives = 146/275 (53%), Gaps = 57/275 (20%)
Query: 3 LLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILD 62
L DP L+++SVII+DEAHERT+ TD+L GLLKK+ +S + H
Sbjct: 159 LGDPNLNKFSVIILDEAHERTLTTDILFGLLKKLFQDKSPNRKEH--------------- 203
Query: 63 RENDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYT 122
LK+++MSA+++ S +FG + GR +PV +
Sbjct: 204 ---------------------LKVVVMSATMELAKLSAFFGNCPIFDIPGRLYPVREKFC 242
Query: 123 LYPEPD------FLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEA 176
P ++ A + +HL+E GDILVFLTGQ EIE L L Q+ E+
Sbjct: 243 NLIGPRDRENTAYIQAIVKVTMDIHLNEMAGDILVFLTGQFEIEKSCEL----LFQMAES 298
Query: 177 SR-----------KLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIK 225
L+ +P + S+ ++QQ ++F P G RK +++TNI+ TS+TI GI+
Sbjct: 299 VDYDYDVQDTTLDGLLILPCYGSMTTDQQRRIFLPPPPGIRKCVISTNISATSLTIDGIR 358
Query: 226 YVIDPGFVKARSYDPVKGMESLIVVPISKAQALQR 260
YV+D GFVK +++P G++ L VVPISK++ALQR
Sbjct: 359 YVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQR 393
>sp|Q9HDY4|YK16_SCHPO Putative ATP-dependent RNA helicase PB1A10.06c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAPB1A10.06c PE=3 SV=1
Length = 1183
Score = 142 bits (357), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 99/304 (32%), Positives = 143/304 (47%), Gaps = 79/304 (25%)
Query: 5 DPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRE 64
D L+ YS +IVDEAHER+V+TD+LLGLL ++ R + +
Sbjct: 510 DFLLTAYSAVIVDEAHERSVNTDILLGLLSRIVRLRREMSKS------------------ 551
Query: 65 NDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSE----YFGCAKAVHVQGRQFPVEIL 120
+K PLKLIIMSA+L FSE + + + RQ+PV I
Sbjct: 552 -------------DQKVKPLKLIIMSATLRVTDFSENKLLFSVPPPIIKIDARQYPVSIH 598
Query: 121 YTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLL--------- 171
+ +PD+L + +H G ILVFLTGQ+E+E + +++++R +
Sbjct: 599 FNRTTKPDYLQDAFDKVCLIHKRLPAGSILVFLTGQQEVEQLCQMLRKRFVRSFRPLKSR 658
Query: 172 -------------------------QLPEASRKLVT----------VPIFSSLPSEQQMK 196
Q+P +S VT +P++S L +E QMK
Sbjct: 659 ARIVVSRKTMSVENEDLQSETEDIDQVPTSSSSSVTYDDESEPMYVLPLYSLLTTEDQMK 718
Query: 197 VFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYDPVKGMESLIVVPISKAQ 256
VF + G R I+ATN+AETS+TIP I+YV+D G K R Y+ ++ V ISKA
Sbjct: 719 VFDSSPEGHRMCIVATNVAETSITIPNIRYVVDCGKAKERVYNEKTSVQKFEVRWISKAN 778
Query: 257 ALQR 260
A QR
Sbjct: 779 ADQR 782
>sp|P45018|HRPA_HAEIN ATP-dependent RNA helicase HrpA homolog OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=hrpA PE=3
SV=2
Length = 1304
Score = 138 bits (348), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 133/258 (51%), Gaps = 50/258 (19%)
Query: 5 DPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRE 64
D +L++YS +I+DEAHER+++ D +LG LK++ R +
Sbjct: 191 DRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRRD--------------------- 229
Query: 65 NDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLY 124
LKLII SA++D FS++F A + V GR +PVE+ Y
Sbjct: 230 -------------------LKLIITSATIDVERFSKHFNNAPIIEVSGRTYPVEVRYRPV 270
Query: 125 PEPDFLDAT--LITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVT 182
E D D ++ E GDIL+F+ G+ EI +Q++ L+ E
Sbjct: 271 VEEDDQDQLQGILNAVDELQAEGRGDILIFMNGEREIRDTAEALQKQNLKHTE------I 324
Query: 183 VPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYDPVK 242
+P+F+ L +++Q K+F P+ G +++LATN+AETS+T+P IKYVIDPG + Y
Sbjct: 325 LPLFARLSAQEQNKIFHPS--GLNRIVLATNVAETSLTVPSIKYVIDPGTARISRYSYRT 382
Query: 243 GMESLIVVPISKAQALQR 260
++ L + PIS+A A QR
Sbjct: 383 KVQRLPIEPISQASANQR 400
>sp|Q9DBV3|DHX34_MOUSE Probable ATP-dependent RNA helicase DHX34 OS=Mus musculus GN=Dhx34
PE=2 SV=2
Length = 1145
Score = 135 bits (341), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 99/269 (36%), Positives = 132/269 (49%), Gaps = 60/269 (22%)
Query: 5 DPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRE 64
+P L +Y V+IVDE HER +H D LLG+L+++ R
Sbjct: 269 EPSLPQYQVLIVDEVHERHLHNDFLLGVLQRLLPQR------------------------ 304
Query: 65 NDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILY--- 121
P LK+I+MSA+++ FS YF A V V GR FP+ ++Y
Sbjct: 305 -----------------PDLKVILMSATINISLFSSYFSHAPVVQVPGRLFPITVVYQPQ 347
Query: 122 ----------TLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLL 171
L P P FL L I + E GD+LVFL+G EI +V Q
Sbjct: 348 EADQTASKSEKLDPRP-FL-RVLEAIDNKYPPEERGDLLVFLSGMAEITTVLDAAQA--- 402
Query: 172 QLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPG 231
+++ V +P+ S+L Q KVF A AG RK IL+TNIAETSVTI GI++V+D G
Sbjct: 403 -YASLTQRWVVLPLHSALSVSDQDKVFDVAPAGVRKCILSTNIAETSVTIDGIRFVVDSG 461
Query: 232 FVKARSYDPVKGMESLIVVPISKAQALQR 260
VK SYDP ++ L IS+A A QR
Sbjct: 462 KVKEMSYDPQAKLQRLQEFWISQASAEQR 490
>sp|Q14147|DHX34_HUMAN Probable ATP-dependent RNA helicase DHX34 OS=Homo sapiens GN=DHX34
PE=1 SV=2
Length = 1143
Score = 135 bits (340), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 132/269 (49%), Gaps = 60/269 (22%)
Query: 5 DPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRE 64
+P L +Y V+IVDE HER +H D LLG+L+++ R
Sbjct: 267 EPSLPQYEVLIVDEVHERHLHNDFLLGVLQRLLPTR------------------------ 302
Query: 65 NDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILY--- 121
P LK+I+MSA+++ FS YF A V V GR FP+ ++Y
Sbjct: 303 -----------------PDLKVILMSATINISLFSSYFSNAPVVQVPGRLFPITVVYQPQ 345
Query: 122 ----------TLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLL 171
L P P FL L +I + E GD+LVFL+G EI +V Q
Sbjct: 346 EAEPTTSKSEKLDPRP-FL-RVLESIDHKYPPEERGDLLVFLSGMAEISAVLEAAQ---- 399
Query: 172 QLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPG 231
+++ V +P+ S+L Q KVF A G RK IL+TNIAETSVTI GI++V+D G
Sbjct: 400 TYASHTQRWVVLPLHSALSVADQDKVFDVAPPGVRKCILSTNIAETSVTIDGIRFVVDSG 459
Query: 232 FVKARSYDPVKGMESLIVVPISKAQALQR 260
VK SYDP ++ L IS+A A QR
Sbjct: 460 KVKEMSYDPQAKLQRLQEFWISQASAEQR 488
>sp|P43329|HRPA_ECOLI ATP-dependent RNA helicase HrpA OS=Escherichia coli (strain K12)
GN=hrpA PE=3 SV=3
Length = 1300
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 130/262 (49%), Gaps = 56/262 (21%)
Query: 5 DPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRE 64
D L +Y II+DEAHER+++ D LLG LK++ R
Sbjct: 185 DRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRR------------------------ 220
Query: 65 NDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLY 124
P LK+II SA++D FS +F A + V GR +PVE+ Y
Sbjct: 221 -----------------PDLKIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPI 263
Query: 125 ------PEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASR 178
E D L A + ++ E+ GDIL+F++G+ EI + + L+ E
Sbjct: 264 VEEADDTERDQLQAIFDAVDELS-QESHGDILIFMSGEREIRDTADALNKLNLRHTE--- 319
Query: 179 KLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSY 238
+P+++ L + +Q +VF + R+++LATN+AETS+T+PGIKYVIDPG + Y
Sbjct: 320 ---ILPLYARLSNSEQNRVFQSHSG--RRIVLATNVAETSLTVPGIKYVIDPGTARISRY 374
Query: 239 DPVKGMESLIVVPISKAQALQR 260
++ L + PIS+A A QR
Sbjct: 375 SYRTKVQRLPIEPISQASANQR 396
>sp|P0CE10|Y4102_ARATH Putative uncharacterized protein At4g01020, chloroplastic
OS=Arabidopsis thaliana GN=At4g01020 PE=4 SV=1
Length = 1787
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/187 (41%), Positives = 101/187 (54%), Gaps = 21/187 (11%)
Query: 84 LKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPD---------FLDATL 134
L+L+IMSA+ DA S+Y +HV GR FPVEI+Y+ + + +
Sbjct: 450 LRLVIMSATADANQLSQYLFDCGILHVNGRNFPVEIVYSPSGTEENSVVGRIASYAGDVV 509
Query: 135 ITIFQVHLDEAPGDILVFLTGQEEIE-SVERLVQERLLQLPEASRKLVTVPIFSSLPSEQ 193
++H E G IL FLT Q E+E + ER V P A + +P+ L E+
Sbjct: 510 KMAVEIHKTEKEGTILAFLTSQAEVEWACERFVA------PSA----IALPLHGKLSFEE 559
Query: 194 QMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYDPVKGMESLIVVPIS 253
Q VF G RKVI ATNIAETS+TIPG+KYVID G VK Y+P GM L V +S
Sbjct: 560 QFMVFQ-NYPGRRKVIFATNIAETSLTIPGVKYVIDSGMVKESKYEPRTGMSILKVCQVS 618
Query: 254 KAQALQR 260
++ A QR
Sbjct: 619 QSSARQR 625
Score = 31.2 bits (69), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 5 DPYLSRYSVIIVDEAHERTVHTD 27
D LS S +I+DEAHER+++TD
Sbjct: 412 DRSLSGISCVIIDEAHERSLNTD 434
>sp|Q5ZI74|DHX30_CHICK Putative ATP-dependent RNA helicase DHX30 OS=Gallus gallus GN=DHX30
PE=2 SV=1
Length = 1231
Score = 121 bits (303), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 96/278 (34%), Positives = 130/278 (46%), Gaps = 68/278 (24%)
Query: 5 DPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRE 64
+P L S ++VDE HER V+TD LL LLK +Q
Sbjct: 591 NPSLEGVSHVVVDEVHERDVNTDFLLILLKGIQKLN------------------------ 626
Query: 65 NDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPV------E 118
P L+L++MSA+ D + FS YFG V V G +PV E
Sbjct: 627 -----------------PDLRLVLMSATGDNQRFSHYFGGCPVVKVPGFMYPVKEYYLEE 669
Query: 119 IL----------YTLYPEPD--FLDATLIT--IFQVHLDEAPGDILVFLTGQEEIESVER 164
IL Y + D LD LIT + Q+ PG IL FL G +EI+ V
Sbjct: 670 ILAKLGRHRHRHYEIKQSDDECVLDLDLITDLVLQIDAHGEPGGILCFLPGWQEIKGV-- 727
Query: 165 LVQERLLQL--PEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIP 222
Q+RLL++ + SR LV +P+ S++P Q +F G RK++LATNIAETS+TI
Sbjct: 728 --QQRLLEMLGSQNSRYLV-LPVHSNIPMMDQQNIFQRPPPGVRKIVLATNIAETSITIN 784
Query: 223 GIKYVIDPGFVKARSYDPVKGMESLIVVPISKAQALQR 260
I +V+D G K YD + L V +SK+ +QR
Sbjct: 785 DIVHVVDSGTHKEERYDLKTKVSCLETVWVSKSNVVQR 822
>sp|Q2NKY8|DHX30_BOVIN Putative ATP-dependent RNA helicase DHX30 OS=Bos taurus GN=DHX30
PE=2 SV=1
Length = 1220
Score = 120 bits (302), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 93/277 (33%), Positives = 131/277 (47%), Gaps = 65/277 (23%)
Query: 5 DPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRE 64
+P L S ++VDE HER V+TD LL LLK +Q
Sbjct: 573 NPSLEGVSHVVVDEEHERDVNTDFLLILLKGLQ--------------------------- 605
Query: 65 NDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPV------E 118
R P L+L++MSA+ D FS YFG + V G +PV +
Sbjct: 606 --------------RLNPALRLVLMSATGDNERFSRYFGGCPVIKVPGFMYPVKEHYLED 651
Query: 119 ILYTL----YP---------EPDFLDATLITIFQVHLDE--APGDILVFLTGQEEIESVE 163
IL L YP + LD L+T +H+D PG IL FL G +EI+ V+
Sbjct: 652 ILAKLGKHQYPHRHRHHESEDECALDLDLVTDLVLHIDARGEPGGILCFLPGWQEIKGVQ 711
Query: 164 RLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPG 223
+ +QE L + E+ K + +P+ S++P Q +F G RK++LATNIAETS+TI
Sbjct: 712 QRLQE-ALGMHES--KYLILPVHSNIPMMDQKAIFQQPPIGVRKIVLATNIAETSITIND 768
Query: 224 IKYVIDPGFVKARSYDPVKGMESLIVVPISKAQALQR 260
I +V+D G K YD + L V +S+A +QR
Sbjct: 769 IVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQR 805
>sp|Q5BJS0|DHX30_RAT Putative ATP-dependent RNA helicase DHX30 OS=Rattus norvegicus
GN=Dhx30 PE=1 SV=1
Length = 1194
Score = 120 bits (301), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 93/277 (33%), Positives = 131/277 (47%), Gaps = 65/277 (23%)
Query: 5 DPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRE 64
+P L S +IVDE HER V+TD LL LLK +Q
Sbjct: 547 NPSLEGVSHVIVDEVHERDVNTDFLLILLKGLQ--------------------------- 579
Query: 65 NDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPV------E 118
R P L+L++MSA+ D FS YFG + V G +PV +
Sbjct: 580 --------------RLNPALRLVLMSATGDNERFSRYFGGCPVIKVPGFMYPVKEHYLED 625
Query: 119 ILYTL----YP---------EPDFLDATLITIFQVHLDE--APGDILVFLTGQEEIESVE 163
IL L YP + LD L+T +H+D PG IL FL G +EI+ V+
Sbjct: 626 ILAKLGKHQYPHRHRHHESEDECALDLDLVTDLVLHIDARGEPGGILCFLPGWQEIKGVQ 685
Query: 164 RLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPG 223
+ +QE L + E+ K + +P+ S++P Q +F G RK++LATNIAETS+T+
Sbjct: 686 QRLQE-ALGMHES--KYLILPVHSNIPMMDQKAIFQQPPLGVRKIVLATNIAETSITVND 742
Query: 224 IKYVIDPGFVKARSYDPVKGMESLIVVPISKAQALQR 260
I +V+D G K YD + L V +S+A +QR
Sbjct: 743 IVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQR 779
>sp|Q99PU8|DHX30_MOUSE Putative ATP-dependent RNA helicase DHX30 OS=Mus musculus GN=Dhx30
PE=2 SV=1
Length = 1217
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/277 (33%), Positives = 131/277 (47%), Gaps = 65/277 (23%)
Query: 5 DPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRE 64
+P L S +IVDE HER V+TD LL LLK +Q
Sbjct: 570 NPSLEGVSHVIVDEVHERDVNTDFLLILLKGLQ--------------------------- 602
Query: 65 NDTNGINTLKQCQGRKFPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPV------E 118
R P L+L++MSA+ D FS YFG + V G +PV +
Sbjct: 603 --------------RLNPALRLVLMSATGDNERFSRYFGGCPVIKVPGFMYPVKEHYLED 648
Query: 119 ILYTL----YP---------EPDFLDATLITIFQVHLDE--APGDILVFLTGQEEIESVE 163
IL L YP + LD L+T +H+D PG IL FL G +EI+ V+
Sbjct: 649 ILAKLGKHQYPHRHRHHESEDECALDLDLVTDLVLHIDARGEPGGILCFLPGWQEIKGVQ 708
Query: 164 RLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPG 223
+ +QE L + E+ K + +P+ S++P Q +F G RK++LATNIAETS+T+
Sbjct: 709 QRLQE-ALGMHES--KYLILPVHSNIPMMDQKAIFQQPPLGVRKIVLATNIAETSITVND 765
Query: 224 IKYVIDPGFVKARSYDPVKGMESLIVVPISKAQALQR 260
I +V+D G K YD + L V +S+A +QR
Sbjct: 766 IVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQR 802
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,872,750
Number of Sequences: 539616
Number of extensions: 3764489
Number of successful extensions: 16805
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 16404
Number of HSP's gapped (non-prelim): 307
length of query: 260
length of database: 191,569,459
effective HSP length: 115
effective length of query: 145
effective length of database: 129,513,619
effective search space: 18779474755
effective search space used: 18779474755
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)