Query 038855
Match_columns 260
No_of_seqs 112 out of 1347
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 03:58:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038855.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038855hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0922 DEAH-box RNA helicase 100.0 1.4E-55 3E-60 435.6 20.6 218 1-260 154-371 (674)
2 KOG0923 mRNA splicing factor A 100.0 3E-52 6.6E-57 411.2 18.0 219 1-260 369-587 (902)
3 COG1643 HrpA HrpA-like helicas 100.0 3.5E-48 7.5E-53 396.8 20.3 214 1-260 153-368 (845)
4 KOG0924 mRNA splicing factor A 100.0 1.8E-46 3.8E-51 371.3 16.0 219 1-260 459-678 (1042)
5 KOG0925 mRNA splicing factor A 100.0 2.2E-44 4.7E-49 347.0 17.4 214 1-260 150-368 (699)
6 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2.4E-42 5.3E-47 355.0 22.0 211 2-260 105-317 (819)
7 PRK11664 ATP-dependent RNA hel 100.0 2.1E-41 4.6E-46 348.0 23.0 211 3-260 109-320 (812)
8 KOG0926 DEAH-box RNA helicase 100.0 3.2E-41 6.9E-46 338.0 16.6 229 1-260 363-685 (1172)
9 TIGR01967 DEAH_box_HrpA ATP-de 100.0 4.2E-40 9E-45 348.4 20.7 210 1-260 170-385 (1283)
10 PRK11131 ATP-dependent RNA hel 100.0 9.4E-40 2E-44 345.3 20.6 209 2-260 178-392 (1294)
11 KOG0920 ATP-dependent RNA heli 100.0 1.8E-40 4E-45 340.5 13.8 216 2-260 279-525 (924)
12 PHA02653 RNA helicase NPH-II; 100.0 1.1E-33 2.3E-38 286.0 20.0 200 3-260 284-495 (675)
13 KOG0331 ATP-dependent RNA heli 100.0 5.6E-28 1.2E-32 236.8 13.9 190 5-245 234-432 (519)
14 COG0513 SrmB Superfamily II DN 99.9 8.1E-27 1.8E-31 229.6 16.8 186 6-245 170-364 (513)
15 KOG0330 ATP-dependent RNA heli 99.9 1.5E-26 3.2E-31 219.0 8.9 185 6-245 200-391 (476)
16 PRK11776 ATP-dependent RNA hel 99.9 1.2E-24 2.5E-29 209.8 15.9 184 6-244 143-332 (460)
17 KOG0333 U5 snRNP-like RNA heli 99.9 3.9E-25 8.5E-30 215.3 12.5 209 7-245 393-608 (673)
18 KOG0328 Predicted ATP-dependen 99.9 6E-25 1.3E-29 201.9 12.9 184 8-245 167-357 (400)
19 PRK04837 ATP-dependent RNA hel 99.9 2.8E-23 6.1E-28 198.3 17.0 186 6-244 153-345 (423)
20 PTZ00110 helicase; Provisional 99.9 1.3E-23 2.9E-28 208.0 14.2 184 6-244 273-467 (545)
21 PRK10590 ATP-dependent RNA hel 99.9 3E-23 6.4E-28 200.7 15.9 184 6-244 145-335 (456)
22 PRK11192 ATP-dependent RNA hel 99.9 3.7E-23 8E-28 197.7 16.0 185 6-244 143-335 (434)
23 PRK11634 ATP-dependent RNA hel 99.9 3.4E-23 7.3E-28 208.6 15.1 184 6-244 145-335 (629)
24 KOG0345 ATP-dependent RNA heli 99.9 4.1E-23 8.8E-28 199.2 11.5 185 8-245 155-348 (567)
25 PRK04537 ATP-dependent RNA hel 99.9 2.3E-22 5E-27 200.4 16.2 149 83-244 192-347 (572)
26 PTZ00424 helicase 45; Provisio 99.9 6.4E-22 1.4E-26 185.9 16.0 150 83-244 201-357 (401)
27 PLN00206 DEAD-box ATP-dependen 99.9 3.6E-22 7.7E-27 196.5 14.6 185 5-244 265-458 (518)
28 PRK01297 ATP-dependent RNA hel 99.9 1.2E-21 2.6E-26 190.0 15.5 148 83-243 270-424 (475)
29 TIGR03817 DECH_helic helicase/ 99.9 2.7E-21 6E-26 197.9 17.0 158 83-244 194-369 (742)
30 KOG0342 ATP-dependent RNA heli 99.9 6.6E-22 1.4E-26 191.5 10.8 185 6-245 226-421 (543)
31 KOG0336 ATP-dependent RNA heli 99.9 9.9E-22 2.1E-26 187.8 10.6 185 6-244 363-555 (629)
32 KOG0340 ATP-dependent RNA heli 99.9 1.8E-21 4E-26 182.9 12.0 187 6-245 149-345 (442)
33 KOG0332 ATP-dependent RNA heli 99.8 5.6E-21 1.2E-25 180.7 11.8 150 83-244 264-426 (477)
34 KOG0326 ATP-dependent RNA heli 99.8 1.9E-21 4.1E-26 181.3 8.2 185 6-245 223-413 (459)
35 KOG0335 ATP-dependent RNA heli 99.8 4.3E-21 9.3E-26 186.5 10.6 193 6-245 222-428 (482)
36 KOG0343 RNA Helicase [RNA proc 99.8 8E-21 1.7E-25 186.4 12.0 185 7-244 212-405 (758)
37 KOG0338 ATP-dependent RNA heli 99.8 3.1E-21 6.7E-26 187.9 8.3 187 5-245 322-517 (691)
38 TIGR00614 recQ_fam ATP-depende 99.8 1.4E-19 3E-24 175.9 17.4 148 83-243 162-315 (470)
39 KOG0347 RNA helicase [RNA proc 99.8 4.9E-21 1.1E-25 187.7 5.2 94 143-245 460-554 (731)
40 PRK11057 ATP-dependent DNA hel 99.8 2.1E-19 4.5E-24 180.2 15.0 147 83-243 174-325 (607)
41 PRK13767 ATP-dependent helicas 99.8 3.1E-19 6.7E-24 185.7 15.8 157 83-244 207-380 (876)
42 PRK01172 ski2-like helicase; P 99.8 2.9E-19 6.3E-24 180.5 14.9 199 7-260 132-356 (674)
43 KOG0921 Dosage compensation co 99.8 2E-20 4.3E-25 190.6 6.2 211 7-260 490-755 (1282)
44 PRK09751 putative ATP-dependen 99.8 8.6E-19 1.9E-23 189.1 16.6 159 83-244 159-367 (1490)
45 KOG0339 ATP-dependent RNA heli 99.8 2.8E-19 6.1E-24 174.3 11.4 183 6-243 366-557 (731)
46 PRK02362 ski2-like helicase; P 99.8 2.1E-18 4.5E-23 176.2 17.6 165 83-260 171-375 (737)
47 KOG0348 ATP-dependent RNA heli 99.8 2.8E-19 6.1E-24 175.0 10.1 210 6-245 283-538 (708)
48 TIGR01389 recQ ATP-dependent D 99.8 2.2E-18 4.8E-23 171.7 15.3 146 84-243 163-313 (591)
49 TIGR02621 cas3_GSU0051 CRISPR- 99.8 3.2E-18 6.9E-23 176.5 15.6 146 83-243 205-372 (844)
50 PRK10689 transcription-repair 99.8 2.1E-18 4.6E-23 183.5 13.8 145 83-243 748-901 (1147)
51 PLN03137 ATP-dependent DNA hel 99.8 3.4E-18 7.3E-23 179.9 14.4 148 83-243 616-769 (1195)
52 TIGR01587 cas3_core CRISPR-ass 99.8 4.9E-18 1.1E-22 157.8 13.9 90 145-243 221-314 (358)
53 KOG0341 DEAD-box protein abstr 99.8 2E-19 4.4E-24 171.1 4.7 190 8-256 324-529 (610)
54 TIGR00580 mfd transcription-re 99.8 1.5E-17 3.3E-22 173.8 16.5 139 83-234 599-741 (926)
55 TIGR03158 cas3_cyano CRISPR-as 99.7 4.5E-17 9.7E-22 153.7 17.0 144 83-244 181-355 (357)
56 KOG0327 Translation initiation 99.7 3.3E-17 7.2E-22 155.1 12.4 181 8-245 167-354 (397)
57 PRK10917 ATP-dependent DNA hel 99.7 1.3E-16 2.7E-21 162.2 17.3 140 83-234 409-560 (681)
58 PRK00254 ski2-like helicase; P 99.7 1.2E-16 2.6E-21 162.9 16.2 144 83-229 169-345 (720)
59 PRK09401 reverse gyrase; Revie 99.7 7E-17 1.5E-21 172.3 13.6 132 83-235 268-411 (1176)
60 COG1201 Lhr Lhr-like helicases 99.7 3.9E-16 8.4E-21 160.6 16.7 176 6-235 145-334 (814)
61 TIGR00643 recG ATP-dependent D 99.7 3.9E-16 8.5E-21 157.3 15.9 140 83-234 386-537 (630)
62 KOG0344 ATP-dependent RNA heli 99.7 8.9E-17 1.9E-21 158.5 9.8 188 7-245 285-479 (593)
63 KOG0334 RNA helicase [RNA proc 99.7 6E-17 1.3E-21 167.5 8.9 185 7-245 512-704 (997)
64 TIGR01054 rgy reverse gyrase. 99.7 3.3E-16 7.1E-21 167.2 14.0 133 85-237 268-412 (1171)
65 KOG4284 DEAD box protein [Tran 99.7 2.8E-16 6.1E-21 156.8 11.6 189 6-244 163-362 (980)
66 KOG0346 RNA helicase [RNA proc 99.7 4.6E-16 9.9E-21 150.0 10.6 151 83-245 201-394 (569)
67 PRK14701 reverse gyrase; Provi 99.6 1.9E-15 4.1E-20 165.2 14.0 130 86-235 272-413 (1638)
68 KOG0337 ATP-dependent RNA heli 99.6 6.1E-15 1.3E-19 141.6 11.7 183 6-243 160-350 (529)
69 KOG0350 DEAD-box ATP-dependent 99.6 1.9E-15 4.2E-20 147.3 7.6 159 79-246 356-525 (620)
70 COG0514 RecQ Superfamily II DN 99.5 3.1E-14 6.7E-19 142.4 11.4 145 83-239 166-315 (590)
71 COG1202 Superfamily II helicas 99.5 6.9E-14 1.5E-18 138.6 13.0 165 6-227 334-512 (830)
72 PHA02558 uvsW UvsW helicase; P 99.5 4.2E-13 9.2E-18 131.9 16.1 90 145-243 343-434 (501)
73 PRK09694 helicase Cas3; Provis 99.5 7.3E-13 1.6E-17 138.2 17.8 83 145-234 559-649 (878)
74 PRK12898 secA preprotein trans 99.4 9.3E-13 2E-17 133.5 11.0 147 85-245 410-570 (656)
75 PRK13766 Hef nuclease; Provisi 99.4 5.5E-12 1.2E-16 129.2 15.7 84 144-236 363-454 (773)
76 KOG0349 Putative DEAD-box RNA 99.4 1.7E-12 3.7E-17 125.7 9.6 96 143-244 502-598 (725)
77 COG1111 MPH1 ERCC4-like helica 99.4 1.9E-11 4.1E-16 119.8 15.7 84 144-235 364-455 (542)
78 PRK09200 preprotein translocas 99.4 3.9E-12 8.4E-17 131.3 11.5 148 85-245 365-525 (790)
79 COG1200 RecG RecG-like helicas 99.4 6E-12 1.3E-16 126.9 12.3 166 5-228 379-556 (677)
80 TIGR00595 priA primosomal prot 99.3 1.5E-11 3.4E-16 121.5 13.6 67 159-232 271-341 (505)
81 TIGR03714 secA2 accessory Sec 99.3 1.3E-11 2.7E-16 127.0 13.0 145 85-244 361-520 (762)
82 COG1204 Superfamily II helicas 99.3 3.4E-11 7.3E-16 124.4 16.1 188 7-244 143-375 (766)
83 COG1205 Distinct helicase fami 99.3 2.2E-11 4.8E-16 127.0 13.2 189 7-235 192-394 (851)
84 cd00079 HELICc Helicase superf 99.2 9.6E-11 2.1E-15 91.9 11.3 82 145-235 27-108 (131)
85 PRK05580 primosome assembly pr 99.2 2.3E-10 5E-15 116.8 15.9 69 158-233 438-510 (679)
86 TIGR00603 rad25 DNA repair hel 99.2 1.1E-10 2.4E-15 119.8 13.2 75 145-233 495-570 (732)
87 PRK12906 secA preprotein trans 99.2 8.6E-11 1.9E-15 121.3 11.4 147 85-244 377-536 (796)
88 TIGR00963 secA preprotein tran 99.2 1.1E-10 2.3E-15 119.8 12.0 146 85-245 342-501 (745)
89 COG4098 comFA Superfamily II D 99.2 5.4E-10 1.2E-14 105.9 14.7 134 85-228 235-378 (441)
90 PRK04914 ATP-dependent helicas 99.1 9.2E-11 2E-15 123.5 8.5 104 133-244 480-586 (956)
91 KOG0351 ATP-dependent DNA heli 99.1 2.4E-10 5.2E-15 120.0 11.0 146 84-241 421-572 (941)
92 PRK05298 excinuclease ABC subu 99.1 5.6E-10 1.2E-14 113.6 12.8 91 145-244 445-541 (652)
93 TIGR00631 uvrb excinuclease AB 99.1 4.9E-10 1.1E-14 114.1 12.3 90 145-243 441-536 (655)
94 KOG0952 DNA/RNA helicase MER3/ 99.1 3.2E-09 7E-14 111.0 15.8 193 6-244 234-457 (1230)
95 COG1197 Mfd Transcription-repa 99.0 2.3E-09 5E-14 113.4 13.3 165 4-228 710-878 (1139)
96 PRK12900 secA preprotein trans 99.0 1.5E-09 3.3E-14 113.7 10.0 147 85-244 535-694 (1025)
97 COG1203 CRISPR-associated heli 99.0 3.5E-09 7.6E-14 109.0 11.1 75 144-228 438-516 (733)
98 KOG0951 RNA helicase BRR2, DEA 99.0 5.5E-09 1.2E-13 110.8 12.4 158 83-244 474-668 (1674)
99 PRK11448 hsdR type I restricti 99.0 3.6E-08 7.9E-13 105.7 18.8 90 144-235 696-786 (1123)
100 PF00271 Helicase_C: Helicase 98.9 1E-09 2.3E-14 80.6 4.8 58 178-235 6-63 (78)
101 smart00490 HELICc helicase sup 98.9 2.7E-09 5.9E-14 77.0 5.7 58 178-235 10-67 (82)
102 KOG0950 DNA polymerase theta/e 98.9 7.1E-09 1.5E-13 107.7 10.7 149 84-233 378-576 (1008)
103 PRK12904 preprotein translocas 98.9 1.2E-08 2.7E-13 105.9 11.5 123 85-222 367-495 (830)
104 PRK13104 secA preprotein trans 98.8 2.9E-08 6.2E-13 103.7 11.9 123 85-222 381-509 (896)
105 COG1061 SSL2 DNA or RNA helica 98.8 6.1E-08 1.3E-12 94.5 13.4 77 145-231 282-358 (442)
106 KOG0353 ATP-dependent DNA heli 98.8 3.1E-08 6.8E-13 95.3 10.6 97 131-236 301-398 (695)
107 KOG0352 ATP-dependent DNA heli 98.7 2.2E-08 4.8E-13 97.3 6.9 81 146-235 255-335 (641)
108 PRK13107 preprotein translocas 98.7 8E-08 1.7E-12 100.4 11.4 123 85-222 386-514 (908)
109 KOG0329 ATP-dependent RNA heli 98.6 9.1E-09 2E-13 94.7 1.0 111 83-241 217-335 (387)
110 KOG0354 DEAD-box like helicase 98.6 1.7E-07 3.7E-12 96.1 9.5 97 133-235 400-504 (746)
111 COG4581 Superfamily II RNA hel 98.3 4.1E-06 8.8E-11 89.0 11.8 181 5-228 224-493 (1041)
112 TIGR01407 dinG_rel DnaQ family 98.3 6.3E-06 1.4E-10 86.4 12.5 144 84-236 596-758 (850)
113 KOG0947 Cytoplasmic exosomal R 98.3 4.7E-06 1E-10 87.4 10.6 88 145-232 566-683 (1248)
114 KOG0948 Nuclear exosomal RNA h 98.2 2.5E-06 5.5E-11 87.6 6.3 106 144-259 381-516 (1041)
115 KOG4150 Predicted ATP-dependen 98.0 3.1E-05 6.8E-10 78.1 10.5 148 83-235 451-613 (1034)
116 COG0556 UvrB Helicase subunit 98.0 7.4E-05 1.6E-09 74.8 12.4 134 83-228 386-519 (663)
117 TIGR02562 cas3_yersinia CRISPR 98.0 0.00022 4.8E-09 76.1 16.7 76 149-228 759-860 (1110)
118 PF06862 DUF1253: Protein of u 97.9 0.00022 4.8E-09 70.1 14.1 206 6-240 157-387 (442)
119 COG4096 HsdR Type I site-speci 97.9 0.0001 2.2E-09 76.7 11.0 79 146-229 426-505 (875)
120 KOG1123 RNA polymerase II tran 97.9 0.00017 3.6E-09 72.0 11.8 83 133-230 531-614 (776)
121 TIGR00348 hsdR type I site-spe 97.8 0.00016 3.5E-09 74.1 11.6 79 146-228 514-614 (667)
122 PRK11747 dinG ATP-dependent DN 97.6 0.00082 1.8E-08 69.4 13.5 142 84-240 457-622 (697)
123 PRK12326 preprotein translocas 97.5 0.0012 2.5E-08 68.6 11.8 138 85-237 364-522 (764)
124 PRK12903 secA preprotein trans 97.4 0.0011 2.3E-08 70.0 11.4 139 85-239 363-516 (925)
125 COG1110 Reverse gyrase [DNA re 97.4 0.00095 2.1E-08 71.0 10.5 130 81-236 274-419 (1187)
126 TIGR00604 rad3 DNA repair heli 97.4 0.0016 3.4E-08 67.2 12.0 150 84-239 442-620 (705)
127 PRK07246 bifunctional ATP-depe 97.4 0.0022 4.8E-08 67.4 12.9 142 84-240 574-731 (820)
128 PRK08074 bifunctional ATP-depe 97.3 0.0014 2.9E-08 69.8 10.9 143 84-235 673-836 (928)
129 KOG0953 Mitochondrial RNA heli 97.2 0.0022 4.8E-08 64.7 10.2 104 137-259 348-453 (700)
130 COG1198 PriA Primosomal protei 97.2 0.0035 7.6E-08 65.2 11.9 63 159-228 493-557 (730)
131 PLN03142 Probable chromatin-re 97.2 0.002 4.2E-08 69.4 9.9 103 145-256 486-600 (1033)
132 COG1199 DinG Rad3-related DNA 97.1 0.0073 1.6E-07 61.3 12.6 97 128-236 462-561 (654)
133 PRK12899 secA preprotein trans 97.0 0.0038 8.2E-08 66.4 10.2 138 85-237 505-656 (970)
134 CHL00122 secA preprotein trans 97.0 0.0051 1.1E-07 64.9 10.9 122 85-221 361-490 (870)
135 PRK13103 secA preprotein trans 96.9 0.0055 1.2E-07 65.0 9.6 120 85-221 386-513 (913)
136 KOG0921 Dosage compensation co 96.8 0.00029 6.3E-09 74.0 0.1 203 8-260 519-763 (1282)
137 PF00270 DEAD: DEAD/DEAH box h 96.8 0.0013 2.9E-08 53.7 3.5 16 7-22 116-131 (169)
138 PRK12902 secA preprotein trans 96.7 0.011 2.4E-07 62.7 10.8 122 85-221 376-505 (939)
139 PRK12901 secA preprotein trans 96.7 0.012 2.5E-07 63.3 10.4 139 85-238 565-717 (1112)
140 cd00268 DEADc DEAD-box helicas 96.4 0.0054 1.2E-07 52.2 4.8 16 6-21 139-154 (203)
141 PF13307 Helicase_C_2: Helicas 96.3 0.0029 6.2E-08 53.8 2.9 88 144-240 7-98 (167)
142 PRK10917 ATP-dependent DNA hel 95.8 0.048 1E-06 56.2 9.4 79 145-228 309-388 (681)
143 TIGR03117 cas_csf4 CRISPR-asso 95.4 0.12 2.6E-06 53.3 10.7 96 129-236 454-563 (636)
144 KOG1000 Chromatin remodeling p 95.4 0.073 1.6E-06 53.6 8.5 104 143-255 489-603 (689)
145 COG1110 Reverse gyrase [DNA re 95.4 0.073 1.6E-06 57.2 9.0 82 130-214 109-190 (1187)
146 PF07652 Flavi_DEAD: Flaviviru 95.3 0.03 6.5E-07 47.7 4.8 30 7-36 92-121 (148)
147 smart00487 DEXDc DEAD-like hel 95.1 0.03 6.5E-07 45.5 4.2 17 7-23 126-142 (201)
148 PRK05580 primosome assembly pr 95.1 0.067 1.4E-06 55.3 7.6 74 146-228 190-263 (679)
149 COG0513 SrmB Superfamily II DN 94.9 0.19 4.1E-06 50.2 10.2 72 149-228 102-179 (513)
150 TIGR00580 mfd transcription-re 94.8 0.15 3.2E-06 54.7 9.6 79 145-228 499-578 (926)
151 cd00046 DEXDc DEAD-like helica 94.7 0.035 7.5E-07 42.3 3.4 14 8-21 101-114 (144)
152 TIGR00595 priA primosomal prot 94.6 0.092 2E-06 52.5 7.1 74 146-228 25-98 (505)
153 TIGR00643 recG ATP-dependent D 94.4 0.2 4.4E-06 51.1 9.1 79 145-228 283-362 (630)
154 PF02399 Herpes_ori_bp: Origin 93.8 1.4 2.9E-05 46.9 13.8 64 145-223 281-344 (824)
155 PRK11634 ATP-dependent RNA hel 93.1 0.72 1.6E-05 47.4 10.4 76 145-228 73-154 (629)
156 PRK11776 ATP-dependent RNA hel 92.8 0.87 1.9E-05 44.3 10.0 75 146-228 72-152 (460)
157 cd00268 DEADc DEAD-box helicas 92.7 1.3 2.8E-05 37.5 9.8 75 145-228 68-148 (203)
158 COG0653 SecA Preprotein transl 92.6 0.43 9.3E-06 50.5 8.0 140 85-239 366-522 (822)
159 PRK14873 primosome assembly pr 92.5 0.27 6E-06 50.9 6.4 75 146-228 188-262 (665)
160 PRK10689 transcription-repair 92.5 0.59 1.3E-05 51.3 9.2 79 145-228 648-727 (1147)
161 PRK14701 reverse gyrase; Provi 92.5 0.53 1.2E-05 53.4 9.0 67 145-214 121-187 (1638)
162 KOG0347 RNA helicase [RNA proc 92.4 0.28 6E-06 50.1 6.1 56 149-213 266-321 (731)
163 KOG0392 SNF2 family DNA-depend 91.7 1 2.3E-05 49.6 9.7 77 146-228 1340-1418(1549)
164 PRK11192 ATP-dependent RNA hel 91.4 0.99 2.1E-05 43.4 8.5 74 146-228 73-152 (434)
165 KOG0354 DEAD-box like helicase 91.1 0.43 9.2E-06 50.0 6.0 14 8-21 177-190 (746)
166 TIGR01054 rgy reverse gyrase. 90.5 0.94 2E-05 49.9 8.2 68 145-214 120-187 (1171)
167 KOG0387 Transcription-coupled 90.0 0.84 1.8E-05 48.3 7.0 87 146-244 546-634 (923)
168 PRK10590 ATP-dependent RNA hel 90.0 1.6 3.5E-05 42.6 8.7 73 147-228 76-154 (456)
169 PRK04837 ATP-dependent RNA hel 89.2 2 4.3E-05 41.3 8.5 73 147-228 84-162 (423)
170 KOG0331 ATP-dependent RNA heli 88.9 2.9 6.2E-05 42.4 9.6 96 131-235 144-259 (519)
171 PRK04537 ATP-dependent RNA hel 88.1 1.8 4E-05 43.9 7.8 73 147-228 85-164 (572)
172 PRK09401 reverse gyrase; Revie 87.6 2.9 6.2E-05 46.3 9.4 67 144-213 121-187 (1176)
173 PF00270 DEAD: DEAD/DEAH box h 86.0 11 0.00025 30.3 10.1 75 145-228 43-124 (169)
174 COG0553 HepA Superfamily II DN 85.7 2.8 6E-05 43.1 7.7 76 148-232 713-790 (866)
175 PRK01297 ATP-dependent RNA hel 85.6 7.6 0.00016 38.0 10.4 74 147-228 163-242 (475)
176 TIGR00614 recQ_fam ATP-depende 85.6 2.4 5.3E-05 41.6 6.9 60 146-214 51-110 (470)
177 TIGR01389 recQ ATP-dependent D 85.3 2.8 6.1E-05 42.3 7.4 60 145-213 52-111 (591)
178 PTZ00110 helicase; Provisional 84.8 2.9 6.4E-05 42.1 7.2 72 148-228 205-282 (545)
179 COG1198 PriA Primosomal protei 83.9 3 6.4E-05 43.9 7.0 74 146-228 245-318 (730)
180 KOG0391 SNF2 family DNA-depend 83.5 5.9 0.00013 44.2 9.0 88 133-230 1264-1353(1958)
181 PRK13766 Hef nuclease; Provisi 83.4 12 0.00026 38.9 11.2 75 144-228 56-136 (773)
182 KOG0339 ATP-dependent RNA heli 82.9 6.1 0.00013 40.4 8.4 74 146-228 295-375 (731)
183 KOG0385 Chromatin remodeling c 82.9 4.6 9.9E-05 43.0 7.7 78 144-230 485-565 (971)
184 KOG0390 DNA repair protein, SN 81.2 5 0.00011 42.5 7.4 53 178-230 618-673 (776)
185 KOG0338 ATP-dependent RNA heli 78.1 8.1 0.00017 39.6 7.4 59 146-213 252-310 (691)
186 KOG0949 Predicted helicase, DE 75.6 3.1 6.8E-05 45.3 4.0 47 182-228 965-1011(1330)
187 KOG0384 Chromodomain-helicase 74.8 7.5 0.00016 43.2 6.6 87 144-243 697-786 (1373)
188 PF00176 SNF2_N: SNF2 family N 74.7 1.2 2.6E-05 39.6 0.5 12 10-21 134-145 (299)
189 PRK11057 ATP-dependent DNA hel 74.5 10 0.00022 38.7 7.3 59 146-213 65-123 (607)
190 PTZ00424 helicase 45; Provisio 74.0 34 0.00073 32.2 10.2 75 145-228 95-175 (401)
191 TIGR02768 TraA_Ti Ti-type conj 72.9 1.3E+02 0.0029 31.8 16.0 74 146-230 562-636 (744)
192 PLN03137 ATP-dependent DNA hel 71.9 12 0.00027 41.5 7.4 60 145-213 499-560 (1195)
193 PLN00206 DEAD-box ATP-dependen 71.0 20 0.00043 35.8 8.3 74 146-228 196-275 (518)
194 KOG0329 ATP-dependent RNA heli 70.7 13 0.00028 35.2 6.4 75 148-230 112-193 (387)
195 PRK04914 ATP-dependent helicas 69.6 3.6 7.9E-05 44.5 2.9 13 9-21 271-283 (956)
196 COG0514 RecQ Superfamily II DN 69.6 13 0.00029 38.3 6.7 67 138-213 49-115 (590)
197 TIGR03817 DECH_helic helicase/ 68.5 31 0.00066 36.4 9.3 58 145-213 80-137 (742)
198 KOG0330 ATP-dependent RNA heli 68.2 32 0.0007 34.2 8.7 72 133-213 116-187 (476)
199 KOG0388 SNF2 family DNA-depend 68.2 18 0.00038 38.7 7.3 76 146-230 1044-1120(1185)
200 PRK07952 DNA replication prote 67.2 13 0.00027 33.9 5.5 56 8-104 160-215 (244)
201 PRK13767 ATP-dependent helicas 66.9 39 0.00085 36.2 9.9 63 147-213 85-154 (876)
202 PRK06893 DNA replication initi 65.7 10 0.00022 33.6 4.5 15 8-22 89-103 (229)
203 smart00492 HELICc3 helicase su 65.4 13 0.00028 30.9 4.9 52 189-240 31-85 (141)
204 KOG0389 SNF2 family DNA-depend 64.9 26 0.00056 37.6 7.8 62 145-216 447-510 (941)
205 KOG0389 SNF2 family DNA-depend 64.5 49 0.0011 35.6 9.7 116 132-256 761-889 (941)
206 TIGR02760 TraI_TIGR conjugativ 63.2 3.2E+02 0.0069 32.5 18.5 146 8-205 527-686 (1960)
207 KOG0345 ATP-dependent RNA heli 62.6 36 0.00077 34.6 8.0 87 142-235 73-177 (567)
208 PRK09751 putative ATP-dependen 62.3 43 0.00093 38.3 9.4 79 146-228 37-129 (1490)
209 PF13401 AAA_22: AAA domain; P 62.3 6.5 0.00014 30.5 2.4 25 12-38 89-113 (131)
210 cd00046 DEXDc DEAD-like helica 62.1 62 0.0014 24.0 10.4 61 144-214 28-88 (144)
211 PRK06526 transposase; Provisio 61.6 18 0.00039 33.0 5.4 15 8-22 157-171 (254)
212 PF13872 AAA_34: P-loop contai 60.9 12 0.00025 35.6 4.1 11 83-93 210-220 (303)
213 TIGR02621 cas3_GSU0051 CRISPR- 59.9 42 0.00091 36.2 8.5 63 146-212 61-142 (844)
214 KOG1132 Helicase of the DEAD s 59.7 1.1E+02 0.0024 33.3 11.3 110 126-240 542-662 (945)
215 COG1200 RecG RecG-like helicas 59.3 55 0.0012 34.4 8.9 83 141-228 306-389 (677)
216 KOG2340 Uncharacterized conser 58.9 4.6 0.0001 41.4 1.2 204 6-238 411-637 (698)
217 PRK12898 secA preprotein trans 57.9 63 0.0014 33.9 9.2 66 144-221 142-207 (656)
218 COG1111 MPH1 ERCC4-like helica 57.9 57 0.0012 33.3 8.5 76 143-228 55-136 (542)
219 KOG1002 Nucleotide excision re 57.3 28 0.00061 35.8 6.3 90 130-228 622-713 (791)
220 PF09848 DUF2075: Uncharacteri 57.3 8 0.00017 36.5 2.4 16 6-21 79-94 (352)
221 PLN03142 Probable chromatin-re 56.8 11 0.00024 41.3 3.7 12 10-21 291-302 (1033)
222 PRK07764 DNA polymerase III su 56.6 16 0.00034 39.1 4.7 34 5-40 115-148 (824)
223 COG2812 DnaX DNA polymerase II 56.5 6.5 0.00014 39.9 1.8 33 4-38 113-145 (515)
224 TIGR00963 secA preprotein tran 55.8 68 0.0015 34.2 9.1 58 146-214 97-154 (745)
225 KOG1015 Transcription regulato 55.6 61 0.0013 36.0 8.7 96 145-240 1141-1253(1567)
226 PRK12323 DNA polymerase III su 54.8 14 0.0003 38.9 3.8 30 6-37 120-149 (700)
227 KOG0951 RNA helicase BRR2, DEA 54.1 37 0.0008 38.4 6.9 129 83-214 1289-1440(1674)
228 PRK14873 primosome assembly pr 53.7 1E+02 0.0022 32.3 9.9 18 83-100 293-310 (665)
229 PRK08451 DNA polymerase III su 53.5 22 0.00047 36.2 5.0 33 5-39 112-144 (535)
230 KOG0949 Predicted helicase, DE 53.4 22 0.00047 39.2 5.0 21 83-103 661-682 (1330)
231 KOG0334 RNA helicase [RNA proc 53.2 46 0.001 36.4 7.4 59 146-213 437-496 (997)
232 smart00491 HELICc2 helicase su 53.0 18 0.0004 30.0 3.7 46 195-240 34-86 (142)
233 PRK08727 hypothetical protein; 52.9 25 0.00054 31.3 4.7 16 8-23 91-106 (233)
234 COG1205 Distinct helicase fami 52.9 79 0.0017 34.1 9.2 70 137-213 106-175 (851)
235 PRK14956 DNA polymerase III su 52.4 17 0.00037 36.6 3.9 29 7-37 118-146 (484)
236 PRK14964 DNA polymerase III su 52.4 18 0.0004 36.4 4.2 32 5-38 111-142 (491)
237 PRK14952 DNA polymerase III su 52.4 34 0.00074 35.2 6.2 31 6-38 114-144 (584)
238 PRK07003 DNA polymerase III su 52.2 20 0.00044 38.3 4.6 31 6-38 115-145 (830)
239 PRK14951 DNA polymerase III su 51.4 27 0.00059 36.2 5.3 29 6-36 120-148 (618)
240 PRK14958 DNA polymerase III su 51.1 21 0.00046 35.9 4.4 31 6-38 115-145 (509)
241 TIGR00678 holB DNA polymerase 50.4 20 0.00042 30.3 3.5 30 5-36 91-120 (188)
242 COG1197 Mfd Transcription-repa 50.0 56 0.0012 36.4 7.6 79 145-228 642-721 (1139)
243 PF13177 DNA_pol3_delta2: DNA 49.9 37 0.0008 28.5 5.1 35 5-41 97-131 (162)
244 PRK14949 DNA polymerase III su 48.8 27 0.00058 38.0 4.9 31 6-38 115-145 (944)
245 TIGR03420 DnaA_homol_Hda DnaA 47.9 63 0.0014 27.6 6.4 17 8-24 88-104 (226)
246 smart00493 TOPRIM topoisomeras 47.7 51 0.0011 23.3 4.9 58 149-217 2-59 (76)
247 PRK13889 conjugal transfer rel 47.5 4.3E+02 0.0093 29.2 14.1 73 147-230 557-629 (988)
248 PRK13104 secA preprotein trans 47.5 1.1E+02 0.0023 33.4 9.1 57 146-213 123-179 (896)
249 KOG0390 DNA repair protein, SN 47.1 20 0.00042 38.2 3.5 14 8-21 374-387 (776)
250 PRK08691 DNA polymerase III su 47.1 27 0.00059 36.8 4.6 31 6-38 115-145 (709)
251 KOG0348 ATP-dependent RNA heli 46.7 21 0.00046 36.8 3.6 58 148-213 213-270 (708)
252 PRK09112 DNA polymerase III su 46.0 30 0.00066 33.1 4.4 31 6-38 137-167 (351)
253 PRK08181 transposase; Validate 45.8 50 0.0011 30.5 5.7 20 86-105 201-220 (269)
254 PF05729 NACHT: NACHT domain 45.6 90 0.002 24.6 6.6 30 83-112 120-149 (166)
255 PF10593 Z1: Z1 domain; Inter 45.3 40 0.00086 30.6 4.9 90 156-256 93-194 (239)
256 COG0610 Type I site-specific r 44.8 23 0.0005 38.5 3.8 26 202-227 590-615 (962)
257 PRK05642 DNA replication initi 44.6 37 0.0008 30.2 4.5 14 8-21 95-108 (234)
258 PRK14965 DNA polymerase III su 43.8 31 0.00067 35.2 4.3 31 6-38 115-145 (576)
259 KOG0342 ATP-dependent RNA heli 43.4 1.2E+02 0.0026 31.0 8.2 72 133-213 140-213 (543)
260 PRK04296 thymidine kinase; Pro 42.8 44 0.00096 28.7 4.6 25 10-36 78-102 (190)
261 PRK14961 DNA polymerase III su 42.8 37 0.00079 32.3 4.5 30 6-37 115-144 (363)
262 KOG0387 Transcription-coupled 42.4 30 0.00066 37.1 4.1 25 9-33 336-361 (923)
263 PRK14969 DNA polymerase III su 42.3 37 0.00081 34.3 4.6 32 5-38 114-145 (527)
264 PRK12899 secA preprotein trans 41.3 1.6E+02 0.0035 32.4 9.3 55 148-213 137-191 (970)
265 PHA02653 RNA helicase NPH-II; 41.3 1E+02 0.0022 32.3 7.7 75 146-228 222-296 (675)
266 PRK14960 DNA polymerase III su 41.3 32 0.0007 36.3 4.0 31 6-38 114-144 (702)
267 PRK09111 DNA polymerase III su 41.2 36 0.00078 35.1 4.3 32 5-38 127-158 (598)
268 PRK07471 DNA polymerase III su 41.2 37 0.00081 32.7 4.3 33 6-40 137-169 (365)
269 KOG1133 Helicase of the DEAD s 40.9 3.4E+02 0.0073 29.2 11.2 116 115-235 599-721 (821)
270 KOG0346 RNA helicase [RNA proc 40.9 40 0.00087 34.1 4.4 83 146-235 93-190 (569)
271 KOG0343 RNA Helicase [RNA proc 40.5 1.2E+02 0.0025 31.8 7.7 103 132-245 126-249 (758)
272 PRK08084 DNA replication initi 40.4 36 0.00079 30.2 3.8 14 9-22 96-109 (235)
273 KOG0350 DEAD-box ATP-dependent 40.4 98 0.0021 31.9 7.1 75 147-226 216-298 (620)
274 PF13173 AAA_14: AAA domain 40.2 43 0.00092 26.5 3.8 27 10-40 61-87 (128)
275 PRK09200 preprotein translocas 39.8 1.7E+02 0.0036 31.5 9.1 59 144-213 117-176 (790)
276 PRK06645 DNA polymerase III su 39.7 72 0.0016 32.3 6.2 31 5-37 123-153 (507)
277 PF03354 Terminase_1: Phage Te 39.7 39 0.00084 33.4 4.2 30 10-41 123-152 (477)
278 PRK00254 ski2-like helicase; P 38.8 2.1E+02 0.0045 29.8 9.6 71 145-228 67-143 (720)
279 PRK12723 flagellar biosynthesi 38.7 85 0.0018 30.7 6.3 19 84-102 288-306 (388)
280 PRK14953 DNA polymerase III su 38.5 43 0.00094 33.5 4.4 30 6-37 115-144 (486)
281 smart00487 DEXDc DEAD-like hel 38.3 2E+02 0.0043 22.7 8.2 59 146-212 54-112 (201)
282 PRK05563 DNA polymerase III su 38.2 45 0.00097 34.0 4.5 30 6-37 115-144 (559)
283 PRK07994 DNA polymerase III su 37.7 37 0.00079 35.5 3.8 31 6-38 115-145 (647)
284 COG3973 Superfamily I DNA and 37.4 2.7E+02 0.0058 29.5 9.8 32 137-168 646-677 (747)
285 PRK14955 DNA polymerase III su 37.3 43 0.00093 32.3 4.0 19 5-23 122-140 (397)
286 KOG0336 ATP-dependent RNA heli 37.2 1.3E+02 0.0027 30.6 7.2 80 146-235 294-387 (629)
287 KOG0989 Replication factor C, 37.1 42 0.00092 32.4 3.8 30 7-39 126-155 (346)
288 TIGR03117 cas_csf4 CRISPR-asso 36.9 21 0.00046 37.2 1.9 16 6-21 202-217 (636)
289 PRK06620 hypothetical protein; 36.3 47 0.001 29.3 3.8 26 9-36 84-109 (214)
290 KOG0341 DEAD-box protein abstr 36.1 49 0.0011 33.2 4.1 94 146-243 245-356 (610)
291 PF13604 AAA_30: AAA domain; P 35.7 44 0.00095 28.9 3.5 27 8-36 91-117 (196)
292 KOG0340 ATP-dependent RNA heli 35.7 1.2E+02 0.0026 30.0 6.7 59 146-213 75-133 (442)
293 PRK12904 preprotein translocas 35.0 2.3E+02 0.005 30.7 9.2 65 145-221 121-185 (830)
294 PRK13826 Dtr system oriT relax 35.0 7E+02 0.015 28.1 16.3 73 147-230 590-662 (1102)
295 PRK07246 bifunctional ATP-depe 34.8 21 0.00046 38.0 1.6 17 5-21 431-447 (820)
296 TIGR02397 dnaX_nterm DNA polym 34.4 50 0.0011 30.5 3.8 30 5-36 112-141 (355)
297 smart00450 RHOD Rhodanese Homo 34.3 91 0.002 22.1 4.6 41 142-191 52-93 (100)
298 PRK08116 hypothetical protein; 33.1 92 0.002 28.5 5.3 32 8-40 176-207 (268)
299 PRK11054 helD DNA helicase IV; 33.0 6E+02 0.013 26.7 15.1 30 5-37 425-454 (684)
300 PF01695 IstB_IS21: IstB-like 32.0 35 0.00077 29.2 2.3 56 8-105 106-161 (178)
301 PRK14971 DNA polymerase III su 31.8 57 0.0012 33.7 4.1 32 5-38 116-147 (614)
302 PRK02362 ski2-like helicase; P 31.5 2E+02 0.0043 30.1 8.0 71 145-228 66-142 (737)
303 PRK09087 hypothetical protein; 31.3 1.1E+02 0.0024 27.1 5.4 25 12-36 89-113 (226)
304 PRK14950 DNA polymerase III su 31.3 65 0.0014 32.9 4.4 32 5-38 115-146 (585)
305 TIGR01073 pcrA ATP-dependent D 31.2 6.2E+02 0.014 26.4 12.3 48 133-190 329-378 (726)
306 PRK07133 DNA polymerase III su 31.2 58 0.0013 34.5 4.0 32 5-38 113-144 (725)
307 PRK14963 DNA polymerase III su 31.1 75 0.0016 32.0 4.7 32 5-38 111-142 (504)
308 PRK14959 DNA polymerase III su 31.0 57 0.0012 34.0 3.9 30 6-37 115-144 (624)
309 PRK14957 DNA polymerase III su 30.4 64 0.0014 33.0 4.1 31 6-38 115-145 (546)
310 KOG4439 RNA polymerase II tran 30.4 2.1E+02 0.0046 30.8 7.8 55 178-232 769-826 (901)
311 PF04364 DNA_pol3_chi: DNA pol 30.4 1.2E+02 0.0027 24.9 5.2 69 146-234 29-97 (137)
312 PRK12402 replication factor C 30.2 1E+02 0.0022 28.0 5.1 15 7-21 122-136 (337)
313 KOG0385 Chromatin remodeling c 30.1 1.7E+02 0.0036 31.8 7.0 59 144-212 215-274 (971)
314 PF05970 PIF1: PIF1-like helic 30.0 49 0.0011 31.5 3.1 33 7-41 99-131 (364)
315 cd01524 RHOD_Pyr_redox Member 30.0 77 0.0017 23.2 3.6 36 146-190 51-86 (90)
316 PRK14962 DNA polymerase III su 29.9 63 0.0014 32.3 3.9 17 5-21 112-128 (472)
317 KOG0952 DNA/RNA helicase MER3/ 29.8 20 0.00044 39.5 0.4 79 82-168 1082-1175(1230)
318 PRK06921 hypothetical protein; 29.5 1.1E+02 0.0024 27.9 5.2 34 8-41 175-212 (266)
319 smart00489 DEXDc3 DEAD-like he 29.4 29 0.00063 32.1 1.4 12 10-21 236-247 (289)
320 smart00488 DEXDc2 DEAD-like he 29.4 29 0.00063 32.1 1.4 12 10-21 236-247 (289)
321 KOG0726 26S proteasome regulat 29.4 2.3E+02 0.005 27.6 7.3 32 203-234 322-357 (440)
322 KOG0741 AAA+-type ATPase [Post 29.3 79 0.0017 33.0 4.5 22 4-26 592-613 (744)
323 PRK14948 DNA polymerase III su 28.6 79 0.0017 32.8 4.5 32 5-38 116-147 (620)
324 PF02463 SMC_N: RecF/RecN/SMC 28.5 1.4E+02 0.003 25.6 5.4 32 9-41 157-188 (220)
325 PF04273 DUF442: Putative phos 28.5 2.7E+02 0.0057 22.2 6.7 48 119-167 60-107 (110)
326 PF04763 DUF562: Protein of un 28.2 3.8E+02 0.0083 22.9 8.3 79 140-224 9-96 (146)
327 PRK08903 DnaA regulatory inact 27.9 2.2E+02 0.0048 24.5 6.7 15 8-22 88-102 (227)
328 COG1054 Predicted sulfurtransf 27.8 2.3E+02 0.0051 27.1 7.0 90 94-192 116-210 (308)
329 PRK11773 uvrD DNA-dependent he 27.6 7.3E+02 0.016 25.9 11.9 43 134-185 334-377 (721)
330 PF05621 TniB: Bacterial TniB 27.5 44 0.00095 31.8 2.2 32 10-41 145-180 (302)
331 PRK07940 DNA polymerase III su 27.4 1E+02 0.0022 30.0 4.9 30 5-36 112-141 (394)
332 TIGR00696 wecB_tagA_cpsF bacte 27.2 3.5E+02 0.0077 23.3 7.7 63 133-203 36-98 (177)
333 PRK05298 excinuclease ABC subu 27.1 1.7E+02 0.0037 30.4 6.6 77 146-222 57-151 (652)
334 TIGR00362 DnaA chromosomal rep 26.8 94 0.002 29.8 4.4 14 8-21 197-210 (405)
335 PRK06835 DNA replication prote 26.8 1.3E+02 0.0027 28.7 5.2 33 8-41 244-276 (329)
336 cd01080 NAD_bind_m-THF_DH_Cycl 26.7 4E+02 0.0087 22.7 8.4 89 132-236 30-121 (168)
337 PRK08074 bifunctional ATP-depe 26.6 35 0.00076 36.8 1.6 17 5-21 450-466 (928)
338 PHA03368 DNA packaging termina 26.5 65 0.0014 34.2 3.4 22 10-33 352-373 (738)
339 PRK12377 putative replication 26.4 1.5E+02 0.0033 26.9 5.5 33 8-41 161-193 (248)
340 PRK06647 DNA polymerase III su 26.3 75 0.0016 32.5 3.8 30 5-36 114-143 (563)
341 TIGR01407 dinG_rel DnaQ family 26.2 41 0.00089 35.8 2.0 16 6-21 436-451 (850)
342 cd01523 RHOD_Lact_B Member of 26.0 96 0.0021 23.1 3.5 36 146-190 61-96 (100)
343 PRK01172 ski2-like helicase; P 25.9 3.4E+02 0.0074 27.9 8.5 70 146-228 65-140 (674)
344 PHA02558 uvsW UvsW helicase; P 25.8 2.4E+02 0.0052 28.0 7.2 27 144-170 156-182 (501)
345 PRK00149 dnaA chromosomal repl 25.7 1.1E+02 0.0024 29.9 4.7 14 8-21 209-222 (450)
346 COG2519 GCD14 tRNA(1-methylade 25.7 1.7E+02 0.0038 27.2 5.7 49 116-169 163-211 (256)
347 TIGR00631 uvrb excinuclease AB 25.6 1.7E+02 0.0037 30.5 6.3 73 146-223 54-149 (655)
348 PRK08939 primosomal protein Dn 25.0 2E+02 0.0043 26.9 6.2 54 8-102 215-269 (306)
349 KOG0335 ATP-dependent RNA heli 24.9 1.3E+02 0.0029 30.4 5.1 73 147-228 153-231 (482)
350 PRK14954 DNA polymerase III su 24.8 88 0.0019 32.5 4.0 19 5-23 122-140 (620)
351 PF05127 Helicase_RecD: Helica 24.5 68 0.0015 28.0 2.7 23 10-38 90-112 (177)
352 PRK14974 cell division protein 24.3 2.1E+02 0.0045 27.4 6.2 29 9-38 221-249 (336)
353 PF02562 PhoH: PhoH-like prote 23.6 1.2E+02 0.0025 27.1 4.1 10 12-21 121-130 (205)
354 PF00448 SRP54: SRP54-type pro 23.1 2.4E+02 0.0052 24.5 5.9 31 9-40 82-112 (196)
355 PF12846 AAA_10: AAA-like doma 22.9 1E+02 0.0023 26.9 3.7 13 9-21 219-231 (304)
356 TIGR01448 recD_rel helicase, p 22.9 98 0.0021 32.6 4.0 25 9-35 415-439 (720)
357 PRK11747 dinG ATP-dependent DN 22.9 51 0.0011 34.4 1.9 16 6-21 240-257 (697)
358 PRK04132 replication factor C 22.9 1.5E+02 0.0032 32.1 5.3 15 10-24 630-644 (846)
359 PRK08058 DNA polymerase III su 22.8 1E+02 0.0022 29.0 3.7 32 5-38 105-136 (329)
360 TIGR03714 secA2 accessory Sec 22.7 4.9E+02 0.011 28.0 9.1 57 146-213 111-172 (762)
361 PRK14970 DNA polymerase III su 22.5 99 0.0021 29.0 3.6 17 5-21 103-119 (367)
362 PRK14722 flhF flagellar biosyn 22.5 1.9E+02 0.0041 28.2 5.6 30 8-38 213-242 (374)
363 PF08704 GCD14: tRNA methyltra 22.4 1.3E+02 0.0028 27.5 4.3 48 117-168 114-161 (247)
364 COG0470 HolB ATPase involved i 22.3 90 0.002 28.0 3.2 19 6-24 105-123 (325)
365 cd06533 Glyco_transf_WecG_TagA 22.2 4.8E+02 0.01 22.0 7.7 69 133-209 34-103 (171)
366 PLN03025 replication factor C 22.0 1.1E+02 0.0025 28.2 3.9 15 9-23 98-112 (319)
367 KOG0351 ATP-dependent DNA heli 21.8 1.7E+02 0.0036 32.2 5.5 60 146-214 304-365 (941)
368 TIGR01075 uvrD DNA helicase II 21.7 9.2E+02 0.02 25.1 11.8 44 133-185 328-372 (715)
369 cd01526 RHOD_ThiF Member of th 21.7 1.5E+02 0.0033 23.1 4.1 38 145-191 71-110 (122)
370 PF01751 Toprim: Toprim domain 21.6 52 0.0011 25.1 1.3 56 150-214 2-69 (100)
371 PRK08769 DNA polymerase III su 21.2 1E+02 0.0022 29.2 3.4 32 5-38 108-139 (319)
372 PHA03333 putative ATPase subun 21.0 1.9E+02 0.0042 30.8 5.6 22 83-104 322-343 (752)
373 KOG2036 Predicted P-loop ATPas 21.0 4.8E+02 0.01 28.3 8.3 40 197-237 538-577 (1011)
374 PRK05707 DNA polymerase III su 20.8 1.4E+02 0.0029 28.4 4.2 32 5-38 101-132 (328)
375 KOG2355 Predicted ABC-type tra 20.7 2.3E+02 0.005 26.3 5.4 33 6-41 161-198 (291)
376 PHA02544 44 clamp loader, smal 20.6 3.1E+02 0.0066 24.9 6.4 14 8-21 98-111 (316)
377 PRK12422 chromosomal replicati 20.5 1.9E+02 0.004 28.7 5.2 14 8-21 200-213 (445)
378 PRK05896 DNA polymerase III su 20.3 1.2E+02 0.0026 31.5 3.9 31 5-37 114-144 (605)
379 COG0634 Hpt Hypoxanthine-guani 20.2 1.9E+02 0.0041 25.6 4.6 80 140-221 28-109 (178)
380 TIGR00596 rad1 DNA repair prot 20.1 1.2E+02 0.0025 32.8 3.8 45 7-93 28-72 (814)
381 PRK06731 flhF flagellar biosyn 20.1 3.3E+02 0.0071 25.2 6.4 12 9-20 153-164 (270)
No 1
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-55 Score=435.56 Aligned_cols=218 Identities=62% Similarity=0.980 Sum_probs=211.6
Q ss_pred CCccCCCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCC
Q 038855 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRK 80 (260)
Q Consensus 1 e~~~d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (260)
|++.||.|++|++|||||||||++++|+|+++||++...|+
T Consensus 154 E~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~--------------------------------------- 194 (674)
T KOG0922|consen 154 EILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRP--------------------------------------- 194 (674)
T ss_pred HHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCC---------------------------------------
Confidence 67899999999999999999999999999999999999888
Q ss_pred CCCceEEEEeccCCHHHHHhhhCCCcEEEecCceeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHH
Q 038855 81 FPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIE 160 (260)
Q Consensus 81 ~~~~qlil~SATl~~~~~~~~~~~~~~v~v~~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve 160 (260)
++|+|+||||+|++.|++||++++++.++|+.|||+++|+..+..+|+++.+.+++++|..+++|+|||||+|+++|+
T Consensus 195 --~LklIimSATlda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe 272 (674)
T KOG0922|consen 195 --DLKLIIMSATLDAEKFSEYFNNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIE 272 (674)
T ss_pred --CceEEEEeeeecHHHHHHHhcCCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccceeeec
Q 038855 161 SVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYDP 240 (260)
Q Consensus 161 ~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~~yd~ 240 (260)
.+++.|.++.+.++.+... .+.|+||+|+.++|+++|.+.++|.|||++||||||++||||||.||||+|++|.+.|||
T Consensus 273 ~~~~~l~e~~~~~~~~~~~-~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p 351 (674)
T KOG0922|consen 273 AACELLRERAKSLPEDCPE-LILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNP 351 (674)
T ss_pred HHHHHHHHHhhhccccCcc-eeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeecc
Confidence 9999999998877765545 789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeEEeeehhhhhcC
Q 038855 241 VKGMESLIVVPISKAQALQR 260 (260)
Q Consensus 241 ~~g~~~l~~~~isk~~~~qR 260 (260)
.+|+++|.++||||++|.||
T Consensus 352 ~~g~~~L~v~~ISkasA~QR 371 (674)
T KOG0922|consen 352 RTGLDSLIVVPISKASANQR 371 (674)
T ss_pred ccCccceeEEechHHHHhhh
Confidence 99999999999999999998
No 2
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-52 Score=411.16 Aligned_cols=219 Identities=58% Similarity=0.924 Sum_probs=215.3
Q ss_pred CCccCCCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCC
Q 038855 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRK 80 (260)
Q Consensus 1 e~~~d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (260)
|+|.+|+|+.||+||+||||||++++|+|++++|.+...|+
T Consensus 369 EfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~Rp--------------------------------------- 409 (902)
T KOG0923|consen 369 EFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRP--------------------------------------- 409 (902)
T ss_pred HHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCC---------------------------------------
Confidence 78899999999999999999999999999999999999998
Q ss_pred CCCceEEEEeccCCHHHHHhhhCCCcEEEecCceeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHH
Q 038855 81 FPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIE 160 (260)
Q Consensus 81 ~~~~qlil~SATl~~~~~~~~~~~~~~v~v~~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve 160 (260)
.+|++++|||+|++.|+.||.++++..++|+.|||+++|+..|+.+|+++.+.+++++|.+++.|+||||++++++++
T Consensus 410 --dLKllIsSAT~DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIE 487 (902)
T KOG0923|consen 410 --DLKLLISSATMDAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIE 487 (902)
T ss_pred --cceEEeeccccCHHHHHHhccCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccceeeec
Q 038855 161 SVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYDP 240 (260)
Q Consensus 161 ~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~~yd~ 240 (260)
.+.+.|++++..+....+.+-++|+|+.||++.|.++|++.++|.|||++||||||+||||+||.||||+||++..+|+|
T Consensus 488 t~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynp 567 (902)
T KOG0923|consen 488 TVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNP 567 (902)
T ss_pred HHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCC
Confidence 99999999999888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeEEeeehhhhhcC
Q 038855 241 VKGMESLIVVPISKAQALQR 260 (260)
Q Consensus 241 ~~g~~~l~~~~isk~~~~qR 260 (260)
++||++|.+.|||||+|.||
T Consensus 568 rtGmesL~v~piSKAsA~QR 587 (902)
T KOG0923|consen 568 RTGMESLLVTPISKASANQR 587 (902)
T ss_pred CcCceeEEEeeechhhhhhh
Confidence 99999999999999999998
No 3
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.5e-48 Score=396.84 Aligned_cols=214 Identities=52% Similarity=0.835 Sum_probs=203.0
Q ss_pred CCccCCCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCC
Q 038855 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRK 80 (260)
Q Consensus 1 e~~~d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (260)
|++.||.|++|++||+||||||++++|++|++++.++..+..
T Consensus 153 ei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~-------------------------------------- 194 (845)
T COG1643 153 EIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRD-------------------------------------- 194 (845)
T ss_pred HHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCC--------------------------------------
Confidence 578899999999999999999999999999999998876652
Q ss_pred CCCceEEEEeccCCHHHHHhhhCCCcEEEecCceeeeeEEEeeCCCcch-HHHHHHHHHHHHhhcCCCCEEEEeCCHHHH
Q 038855 81 FPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDF-LDATLITIFQVHLDEAPGDILVFLTGQEEI 159 (260)
Q Consensus 81 ~~~~qlil~SATl~~~~~~~~~~~~~~v~v~~~~~~v~~~~~~~~~~~~-~~~~~~~l~~i~~~~~~g~iLVFl~~~~~v 159 (260)
++|+|+||||+|.+.|++||+++++++++|++|||+++|......++ ++..+...++++..+.+|+||||+||.++|
T Consensus 195 --DLKiIimSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI 272 (845)
T COG1643 195 --DLKLIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREI 272 (845)
T ss_pred --CceEEEEecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHH
Confidence 69999999999999999999999999999999999999998888888 888888899999999999999999999999
Q ss_pred HHHHHHHHH-HHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccceee
Q 038855 160 ESVERLVQE-RLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSY 238 (260)
Q Consensus 160 e~v~~~L~~-~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~~y 238 (260)
+.+.+.|.+ .+. ..+.++|+||.|+.++|+++|++.+.|+|||++||||||+|||||||+||||+|+.+.+.|
T Consensus 273 ~~~~~~L~~~~l~------~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y 346 (845)
T COG1643 273 ERTAEWLEKAELG------DDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRY 346 (845)
T ss_pred HHHHHHHHhcccc------CCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCccccccc
Confidence 999999998 221 4789999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCceeeeEEeeehhhhhcC
Q 038855 239 DPVKGMESLIVVPISKAQALQR 260 (260)
Q Consensus 239 d~~~g~~~l~~~~isk~~~~qR 260 (260)
|+.+|++.|.++|||||+|.||
T Consensus 347 ~~~~g~~~L~~~~ISqAsA~QR 368 (845)
T COG1643 347 DPRTGLTRLETEPISKASADQR 368 (845)
T ss_pred ccccCceeeeEEEechhhhhhh
Confidence 9999999999999999999998
No 4
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-46 Score=371.31 Aligned_cols=219 Identities=52% Similarity=0.862 Sum_probs=211.1
Q ss_pred CCccCCCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCC
Q 038855 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRK 80 (260)
Q Consensus 1 e~~~d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (260)
|.+.|..|.+|++||+||||||++.+|+|+++||.++..|.
T Consensus 459 EsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRr--------------------------------------- 499 (1042)
T KOG0924|consen 459 ESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRR--------------------------------------- 499 (1042)
T ss_pred HHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhc---------------------------------------
Confidence 66789999999999999999999999999999999999888
Q ss_pred CCCceEEEEeccCCHHHHHhhhCCCcEEEecCceeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHH
Q 038855 81 FPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIE 160 (260)
Q Consensus 81 ~~~~qlil~SATl~~~~~~~~~~~~~~v~v~~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve 160 (260)
++|+|++||||++..|+.|||++|...++|++|||++.|...+..+|+++++...+++|....+|+||||.+|++++|
T Consensus 500 --dlKliVtSATm~a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE 577 (1042)
T KOG0924|consen 500 --DLKLIVTSATMDAQKFSNFFGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIE 577 (1042)
T ss_pred --cceEEEeeccccHHHHHHHhCCCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchh
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccCC-CCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccceeee
Q 038855 161 SVERLVQERLLQLPEAS-RKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYD 239 (260)
Q Consensus 161 ~v~~~L~~~l~~~~~~~-~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~~yd 239 (260)
-....+.+.+.++.... ..+.++||++-||+.-|.++|+....|.||+||||||||+++|||||.||||+|+.|..+|+
T Consensus 578 ~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn 657 (1042)
T KOG0924|consen 578 CTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYN 657 (1042)
T ss_pred HHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecc
Confidence 99999999888765543 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeeeEEeeehhhhhcC
Q 038855 240 PVKGMESLIVVPISKAQALQR 260 (260)
Q Consensus 240 ~~~g~~~l~~~~isk~~~~qR 260 (260)
|+.||.+|+..|||||+|.||
T Consensus 658 ~~~G~D~L~~~pIS~AnA~QR 678 (1042)
T KOG0924|consen 658 PRIGMDALQIVPISQANADQR 678 (1042)
T ss_pred cccccceeEEEechhccchhh
Confidence 999999999999999999998
No 5
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-44 Score=347.02 Aligned_cols=214 Identities=55% Similarity=0.855 Sum_probs=202.4
Q ss_pred CCccCCCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCC
Q 038855 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRK 80 (260)
Q Consensus 1 e~~~d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (260)
|++.||.|.+|++|||||||||++-+|+|+|+||.+...|+
T Consensus 150 Eams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~rp--------------------------------------- 190 (699)
T KOG0925|consen 150 EAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNRP--------------------------------------- 190 (699)
T ss_pred HHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhCC---------------------------------------
Confidence 78899999999999999999999999999999999998887
Q ss_pred CCCceEEEEeccCCHHHHHhhhCCCcEEEecCceeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHH
Q 038855 81 FPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIE 160 (260)
Q Consensus 81 ~~~~qlil~SATl~~~~~~~~~~~~~~v~v~~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve 160 (260)
++|+|+||||+++.+|..||+++|+++++| .+|||++|+..++++++++++.+++++|..+.+|+||||+++.++|+
T Consensus 191 --dLk~vvmSatl~a~Kfq~yf~n~Pll~vpg-~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe 267 (699)
T KOG0925|consen 191 --DLKLVVMSATLDAEKFQRYFGNAPLLAVPG-THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIE 267 (699)
T ss_pred --CceEEEeecccchHHHHHHhCCCCeeecCC-CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHH
Confidence 899999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCC---C--CeEEEEecCcccccCCCCCceEEEeCCCccc
Q 038855 161 SVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAA---G--FRKVILATNIAETSVTIPGIKYVIDPGFVKA 235 (260)
Q Consensus 161 ~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~---g--~~kVlvaTdiae~gidIp~V~~VId~g~~~~ 235 (260)
.+.+.+..-..++......++++|+| ..++.++|++.+. | .|||+|+||+||++++|++|.||||+||.++
T Consensus 268 ~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kq 343 (699)
T KOG0925|consen 268 DACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQ 343 (699)
T ss_pred HHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhh
Confidence 99999987777777777789999999 5566778888763 2 6999999999999999999999999999999
Q ss_pred eeeecCCCceeeeEEeeehhhhhcC
Q 038855 236 RSYDPVKGMESLIVVPISKAQALQR 260 (260)
Q Consensus 236 ~~yd~~~g~~~l~~~~isk~~~~qR 260 (260)
++|||+.+.+++.+.||||+||.||
T Consensus 344 kVYNPRIRvesllv~PISkasA~qR 368 (699)
T KOG0925|consen 344 KVYNPRIRVESLLVSPISKASAQQR 368 (699)
T ss_pred cccCcceeeeeeeeccchHhHHHHH
Confidence 9999999999999999999999998
No 6
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.4e-42 Score=354.95 Aligned_cols=211 Identities=40% Similarity=0.575 Sum_probs=187.6
Q ss_pred CccCCCCCcccEEEEecCCcCCcchhHHHHHHHHHHhh-ccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCC
Q 038855 2 ALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNA-RSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRK 80 (260)
Q Consensus 2 ~~~d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (260)
+..|+.|+++++|||||+|||++++|+++++++.+... ++
T Consensus 105 l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~--------------------------------------- 145 (819)
T TIGR01970 105 IQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLRE--------------------------------------- 145 (819)
T ss_pred HhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCC---------------------------------------
Confidence 34689999999999999999999999999999888753 44
Q ss_pred CCCceEEEEeccCCHHHHHhhhCCCcEEEecCceeeeeEEEeeCCCcchHHHHH-HHHHHHHhhcCCCCEEEEeCCHHHH
Q 038855 81 FPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDFLDATL-ITIFQVHLDEAPGDILVFLTGQEEI 159 (260)
Q Consensus 81 ~~~~qlil~SATl~~~~~~~~~~~~~~v~v~~~~~~v~~~~~~~~~~~~~~~~~-~~l~~i~~~~~~g~iLVFl~~~~~v 159 (260)
++|+|+||||++...+.+||++++++.++++.|||+++|......+++...+ ..+..+.. +.+|++||||||+++|
T Consensus 146 --dlqlIlmSATl~~~~l~~~l~~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~-~~~g~iLVFlpg~~eI 222 (819)
T TIGR01970 146 --DLKILAMSATLDGERLSSLLPDAPVVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALA-SETGSILVFLPGQAEI 222 (819)
T ss_pred --CceEEEEeCCCCHHHHHHHcCCCcEEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHHH-hcCCcEEEEECCHHHH
Confidence 7899999999999899999999999999999999999999876555443332 33444443 3479999999999999
Q ss_pred HHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccceeee
Q 038855 160 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYD 239 (260)
Q Consensus 160 e~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~~yd 239 (260)
+.+++.|.+.+. .++.++++||+|++++|.++|++|+.|+++|||||||||||||||+|+||||+|+++...||
T Consensus 223 ~~l~~~L~~~~~------~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd 296 (819)
T TIGR01970 223 RRVQEQLAERLD------SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFD 296 (819)
T ss_pred HHHHHHHHhhcC------CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccc
Confidence 999999987532 37899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeeeEEeeehhhhhcC
Q 038855 240 PVKGMESLIVVPISKAQALQR 260 (260)
Q Consensus 240 ~~~g~~~l~~~~isk~~~~qR 260 (260)
|.+|++.|.+.||||++|.||
T Consensus 297 ~~~g~~~L~~~~iSkasa~QR 317 (819)
T TIGR01970 297 PKTGITRLETVRISQASATQR 317 (819)
T ss_pred cccCCceeeEEEECHHHHHhh
Confidence 999999999999999999998
No 7
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.1e-41 Score=347.98 Aligned_cols=211 Identities=39% Similarity=0.607 Sum_probs=187.2
Q ss_pred ccCCCCCcccEEEEecCCcCCcchhHHHHHHHHHHhh-ccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCC
Q 038855 3 LLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNA-RSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKF 81 (260)
Q Consensus 3 ~~d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (260)
..||.|+++++|||||+|||++++|+++++++.+... ++
T Consensus 109 ~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~---------------------------------------- 148 (812)
T PRK11664 109 QRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRD---------------------------------------- 148 (812)
T ss_pred hhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCc----------------------------------------
Confidence 4689999999999999999999999999998887653 44
Q ss_pred CCceEEEEeccCCHHHHHhhhCCCcEEEecCceeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHH
Q 038855 82 PPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIES 161 (260)
Q Consensus 82 ~~~qlil~SATl~~~~~~~~~~~~~~v~v~~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve~ 161 (260)
++|+++||||++.+.+++||++++++.++++.|||+++|...+..+++...+...+..+..+..|++||||||+++++.
T Consensus 149 -~lqlilmSATl~~~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~ 227 (812)
T PRK11664 149 -DLKLLIMSATLDNDRLQQLLPDAPVIVSEGRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQR 227 (812)
T ss_pred -cceEEEEecCCCHHHHHHhcCCCCEEEecCccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHH
Confidence 7899999999999999999999999999999999999999877666554433332322333457999999999999999
Q ss_pred HHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccceeeecC
Q 038855 162 VERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYDPV 241 (260)
Q Consensus 162 v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~~yd~~ 241 (260)
+++.|++.+. .++.+.++||++++++|.+++++|++|+++|||||||||||||||+|+||||+|+++...|||.
T Consensus 228 l~~~L~~~~~------~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~ 301 (812)
T PRK11664 228 VQEQLASRVA------SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPK 301 (812)
T ss_pred HHHHHHHhcc------CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCccccccccc
Confidence 9999987432 3688999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeEEeeehhhhhcC
Q 038855 242 KGMESLIVVPISKAQALQR 260 (260)
Q Consensus 242 ~g~~~l~~~~isk~~~~qR 260 (260)
+|++.|.++||||+++.||
T Consensus 302 ~g~~~L~~~~iSkasa~QR 320 (812)
T PRK11664 302 TGLTRLVTQRISQASMTQR 320 (812)
T ss_pred CCcceeEEEeechhhhhhh
Confidence 9999999999999999998
No 8
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.2e-41 Score=338.00 Aligned_cols=229 Identities=44% Similarity=0.665 Sum_probs=203.6
Q ss_pred CCccCCCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCC
Q 038855 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRK 80 (260)
Q Consensus 1 e~~~d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (260)
|+..|+.|.+|++|||||||||++.+|+|.|+|.++...|.+ +-. +||+
T Consensus 363 Ei~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k----------------~~k------------e~~~--- 411 (1172)
T KOG0926|consen 363 EIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQK----------------YYK------------EQCQ--- 411 (1172)
T ss_pred HHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHH----------------Hhh------------hhcc---
Confidence 677899999999999999999999999999999999988763 000 0111
Q ss_pred CCCceEEEEeccCCHHHHHh---hhC-CCcEEEecCceeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCH
Q 038855 81 FPPLKLIIMSASLDARGFSE---YFG-CAKAVHVQGRQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQ 156 (260)
Q Consensus 81 ~~~~qlil~SATl~~~~~~~---~~~-~~~~v~v~~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~ 156 (260)
-.++|+|+||||+-+..|.+ .|+ -+|++.++.++|||.+||......+|+..++...+.+|...++|.||||++|+
T Consensus 412 ~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQ 491 (1172)
T KOG0926|consen 412 IKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQ 491 (1172)
T ss_pred cCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeCh
Confidence 12799999999998777773 565 46799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh---------------------------------------------------c-------------
Q 038855 157 EEIESVERLVQERLL---------------------------------------------------Q------------- 172 (260)
Q Consensus 157 ~~ve~v~~~L~~~l~---------------------------------------------------~------------- 172 (260)
++|+.+.+.|+++.+ +
T Consensus 492 qEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~ 571 (1172)
T KOG0926|consen 492 QEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNAL 571 (1172)
T ss_pred HHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhcc
Confidence 999999999999842 0
Q ss_pred --------------------------CccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceE
Q 038855 173 --------------------------LPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKY 226 (260)
Q Consensus 173 --------------------------~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~ 226 (260)
-+.+...+.++||+|-|+.+.|++||...+.|.|-++||||+||+++|||+|+|
T Consensus 572 ~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkY 651 (1172)
T KOG0926|consen 572 ADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKY 651 (1172)
T ss_pred ccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeE
Confidence 001113678999999999999999999999999999999999999999999999
Q ss_pred EEeCCCccceeeecCCCceeeeEEeeehhhhhcC
Q 038855 227 VIDPGFVKARSYDPVKGMESLIVVPISKAQALQR 260 (260)
Q Consensus 227 VId~g~~~~~~yd~~~g~~~l~~~~isk~~~~qR 260 (260)
|||||+.+.+.||..+|++++.++|||||+|.||
T Consensus 652 VVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQR 685 (1172)
T KOG0926|consen 652 VVDCGRVKERLYDSKTGVSSFEVDWISKASADQR 685 (1172)
T ss_pred EEeccchhhhccccccCceeEEEEeeeccccchh
Confidence 9999999999999999999999999999999998
No 9
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=4.2e-40 Score=348.42 Aligned_cols=210 Identities=43% Similarity=0.699 Sum_probs=185.8
Q ss_pred CCccCCCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCC
Q 038855 1 EALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRK 80 (260)
Q Consensus 1 e~~~d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (260)
|+..||.|++|++|||||||||++++|+++++++++...++
T Consensus 170 ~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rp--------------------------------------- 210 (1283)
T TIGR01967 170 ETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRP--------------------------------------- 210 (1283)
T ss_pred HhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCC---------------------------------------
Confidence 45678999999999999999999999999999999977776
Q ss_pred CCCceEEEEeccCCHHHHHhhhCCCcEEEecCceeeeeEEEeeCCC------cchHHHHHHHHHHHHhhcCCCCEEEEeC
Q 038855 81 FPPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPE------PDFLDATLITIFQVHLDEAPGDILVFLT 154 (260)
Q Consensus 81 ~~~~qlil~SATl~~~~~~~~~~~~~~v~v~~~~~~v~~~~~~~~~------~~~~~~~~~~l~~i~~~~~~g~iLVFl~ 154 (260)
++|+|+||||++.+.|++||++++++.++|+.|||+++|..... .++.+..+..+..++. +.+|+||||||
T Consensus 211 --dLKlIlmSATld~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~-~~~GdILVFLp 287 (1283)
T TIGR01967 211 --DLKIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFA-EGPGDILIFLP 287 (1283)
T ss_pred --CCeEEEEeCCcCHHHHHHHhcCCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHh-hCCCCEEEeCC
Confidence 78999999999999999999999999999999999999986432 1344445555555544 35799999999
Q ss_pred CHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCcc
Q 038855 155 GQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVK 234 (260)
Q Consensus 155 ~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~ 234 (260)
|+.+|+.+++.|++.. ..++.+.++||+|++++|.++|+++ +.++|||||||||+|||||+|+||||+|+++
T Consensus 288 g~~EI~~l~~~L~~~~------~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r 359 (1283)
T TIGR01967 288 GEREIRDAAEILRKRN------LRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTAR 359 (1283)
T ss_pred CHHHHHHHHHHHHhcC------CCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCcc
Confidence 9999999999998742 1357899999999999999999876 3589999999999999999999999999999
Q ss_pred ceeeecCCCceeeeEEeeehhhhhcC
Q 038855 235 ARSYDPVKGMESLIVVPISKAQALQR 260 (260)
Q Consensus 235 ~~~yd~~~g~~~l~~~~isk~~~~qR 260 (260)
...|||.+|++.+.+.||||++|.||
T Consensus 360 ~~~yd~~~~~~~L~~~~ISkasa~QR 385 (1283)
T TIGR01967 360 ISRYSYRTKVQRLPIEPISQASANQR 385 (1283)
T ss_pred ccccccccCccccCCccCCHHHHHHH
Confidence 99999999999999999999999998
No 10
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=9.4e-40 Score=345.28 Aligned_cols=209 Identities=40% Similarity=0.652 Sum_probs=183.6
Q ss_pred CccCCCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCC
Q 038855 2 ALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKF 81 (260)
Q Consensus 2 ~~~d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (260)
+..|+.|++|++|||||||||++++|+++++++++...++
T Consensus 178 l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rp---------------------------------------- 217 (1294)
T PRK11131 178 IQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRP---------------------------------------- 217 (1294)
T ss_pred HhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCC----------------------------------------
Confidence 4578999999999999999999999999999998876665
Q ss_pred CCceEEEEeccCCHHHHHhhhCCCcEEEecCceeeeeEEEeeCCCc------chHHHHHHHHHHHHhhcCCCCEEEEeCC
Q 038855 82 PPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEP------DFLDATLITIFQVHLDEAPGDILVFLTG 155 (260)
Q Consensus 82 ~~~qlil~SATl~~~~~~~~~~~~~~v~v~~~~~~v~~~~~~~~~~------~~~~~~~~~l~~i~~~~~~g~iLVFl~~ 155 (260)
++|+|+||||++.+.|++||++++++.++++.|||+++|...... +++...+..+..++ .+.+|++||||||
T Consensus 218 -dlKvILmSATid~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~-~~~~GdILVFLpg 295 (1294)
T PRK11131 218 -DLKVIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELG-REGPGDILIFMSG 295 (1294)
T ss_pred -CceEEEeeCCCCHHHHHHHcCCCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHh-cCCCCCEEEEcCC
Confidence 789999999999999999999999999999999999999876432 23444444444443 3568999999999
Q ss_pred HHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc
Q 038855 156 QEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA 235 (260)
Q Consensus 156 ~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~ 235 (260)
+++|+.+++.|.+. +...+.+.++||+|++++|.++|++ .|.++|||||||||||||||+|+||||+|+.+.
T Consensus 296 ~~EIe~lae~L~~~------~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~ 367 (1294)
T PRK11131 296 EREIRDTADALNKL------NLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARI 367 (1294)
T ss_pred HHHHHHHHHHHHhc------CCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccc
Confidence 99999999999873 1134568999999999999999987 478999999999999999999999999999999
Q ss_pred eeeecCCCceeeeEEeeehhhhhcC
Q 038855 236 RSYDPVKGMESLIVVPISKAQALQR 260 (260)
Q Consensus 236 ~~yd~~~g~~~l~~~~isk~~~~qR 260 (260)
..|||++|++.+...||||+++.||
T Consensus 368 ~~Yd~~~~~~~Lp~~~iSkasa~QR 392 (1294)
T PRK11131 368 SRYSYRTKVQRLPIEPISQASANQR 392 (1294)
T ss_pred cccccccCcccCCeeecCHhhHhhh
Confidence 9999999999999999999999998
No 11
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=1.8e-40 Score=340.48 Aligned_cols=216 Identities=45% Similarity=0.614 Sum_probs=191.2
Q ss_pred CccCCCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCC
Q 038855 2 ALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKF 81 (260)
Q Consensus 2 ~~~d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (260)
|+.|+.+..++|||+||+|||++++|+||-++|.++..++
T Consensus 279 L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p---------------------------------------- 318 (924)
T KOG0920|consen 279 LQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNP---------------------------------------- 318 (924)
T ss_pred hccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCC----------------------------------------
Confidence 5679999999999999999999999999999999999887
Q ss_pred CCceEEEEeccCCHHHHHhhhCCCcEEEecCceeeeeEEEeeCC-----------------Ccc--------------hH
Q 038855 82 PPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYP-----------------EPD--------------FL 130 (260)
Q Consensus 82 ~~~qlil~SATl~~~~~~~~~~~~~~v~v~~~~~~v~~~~~~~~-----------------~~~--------------~~ 130 (260)
.+|+|+||||+|.+.|+.|||++++++++|+.|||.++|+++. +.+ -.
T Consensus 319 -~LkvILMSAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~ 397 (924)
T KOG0920|consen 319 -DLKVILMSATLDAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDY 397 (924)
T ss_pred -CceEEEeeeecchHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccH
Confidence 8999999999999999999999999999999999999988651 011 01
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEE
Q 038855 131 DATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVIL 210 (260)
Q Consensus 131 ~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlv 210 (260)
+.....+..++....+|.||||+||.++|..+.+.|+....- .+..++.+.++||.++.++|..+|...+.|.||||+
T Consensus 398 ~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f--~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIl 475 (924)
T KOG0920|consen 398 DLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPF--ADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIIL 475 (924)
T ss_pred HHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhcccc--ccccceEEEeccccCChHHHHHhcCCCCCCcchhhh
Confidence 122233445666667899999999999999999999764321 122579999999999999999999999999999999
Q ss_pred ecCcccccCCCCCceEEEeCCCccceeeecCCCceeeeEEeeehhhhhcC
Q 038855 211 ATNIAETSVTIPGIKYVIDPGFVKARSYDPVKGMESLIVVPISKAQALQR 260 (260)
Q Consensus 211 aTdiae~gidIp~V~~VId~g~~~~~~yd~~~g~~~l~~~~isk~~~~qR 260 (260)
||||||+|||||+|-||||+|+.+...|||.+.++++...|||||+|.||
T Consensus 476 aTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR 525 (924)
T KOG0920|consen 476 ATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQR 525 (924)
T ss_pred hhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHh
Confidence 99999999999999999999999999999999999999999999999998
No 12
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.1e-33 Score=286.01 Aligned_cols=200 Identities=25% Similarity=0.355 Sum_probs=160.2
Q ss_pred ccCCCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCC
Q 038855 3 LLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFP 82 (260)
Q Consensus 3 ~~d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (260)
+.++.|+++++|||||||||+..+|+++++++++...
T Consensus 284 L~l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~------------------------------------------- 320 (675)
T PHA02653 284 LTLNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDK------------------------------------------- 320 (675)
T ss_pred ccccccccCCEEEccccccCccchhHHHHHHHHhhhh-------------------------------------------
Confidence 3467899999999999999999999999999866432
Q ss_pred CceEEEEeccC--CHHHHHhhhCCCcEEEecCce-eeeeEEEeeCCC-----cchHHHHHHHHHHHHhh---cCCCCEEE
Q 038855 83 PLKLIIMSASL--DARGFSEYFGCAKAVHVQGRQ-FPVEILYTLYPE-----PDFLDATLITIFQVHLD---EAPGDILV 151 (260)
Q Consensus 83 ~~qlil~SATl--~~~~~~~~~~~~~~v~v~~~~-~~v~~~~~~~~~-----~~~~~~~~~~l~~i~~~---~~~g~iLV 151 (260)
..|+++||||+ +.+.+.+||++++.++++++. +||+++|..... .+++......+.+.+.. ..++++||
T Consensus 321 ~rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLV 400 (675)
T PHA02653 321 IRSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIV 400 (675)
T ss_pred cCEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEE
Confidence 23799999999 466788999999999999875 999999986542 12223222233333322 24579999
Q ss_pred EeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhccc-CCCCeEEEEecCcccccCCCCCceEEEeC
Q 038855 152 FLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPA-AAGFRKVILATNIAETSVTIPGIKYVIDP 230 (260)
Q Consensus 152 Fl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~-~~g~~kVlvaTdiae~gidIp~V~~VId~ 230 (260)
||||+++++.+.+.|++.. .++.+.++||++++.+ ++++.| ++|+++||||||+||||||||+|++|||+
T Consensus 401 Flpg~~ei~~l~~~L~~~~-------~~~~v~~LHG~Lsq~e--q~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~ 471 (675)
T PHA02653 401 FVASVSQCEEYKKYLEKRL-------PIYDFYIIHGKVPNID--EILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDT 471 (675)
T ss_pred EECcHHHHHHHHHHHHhhc-------CCceEEeccCCcCHHH--HHHHHHhccCceeEEeccChhhccccccCeeEEEEC
Confidence 9999999999999998742 2689999999999864 445555 67999999999999999999999999999
Q ss_pred CCccceeeecCCCceeeeEEeeehhhhhcC
Q 038855 231 GFVKARSYDPVKGMESLIVVPISKAQALQR 260 (260)
Q Consensus 231 g~~~~~~yd~~~g~~~l~~~~isk~~~~qR 260 (260)
|+++.+. |..|+ ..|||++++.||
T Consensus 472 G~~k~p~--~~~g~----~~~iSkasa~QR 495 (675)
T PHA02653 472 GRVYVPE--PFGGK----EMFISKSMRTQR 495 (675)
T ss_pred CCccCCC--cccCc----ccccCHHHHHHh
Confidence 9887663 55665 359999999998
No 13
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=5.6e-28 Score=236.83 Aligned_cols=190 Identities=16% Similarity=0.273 Sum_probs=150.4
Q ss_pred CCCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCc
Q 038855 5 DPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPL 84 (260)
Q Consensus 5 d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (260)
.-.|++++++|||||| ||++++|--.+-+.+...... ..
T Consensus 234 ~~~l~~v~ylVLDEAD-rMldmGFe~qI~~Il~~i~~~----------------------------------------~r 272 (519)
T KOG0331|consen 234 SLNLSRVTYLVLDEAD-RMLDMGFEPQIRKILSQIPRP----------------------------------------DR 272 (519)
T ss_pred CccccceeEEEeccHH-hhhccccHHHHHHHHHhcCCC----------------------------------------cc
Confidence 3568999999999997 899999888888888777331 55
Q ss_pred eEEEEeccCC--HHHHH-hhhCCCcEEEecCce-----eeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCH
Q 038855 85 KLIIMSASLD--ARGFS-EYFGCAKAVHVQGRQ-----FPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQ 156 (260)
Q Consensus 85 qlil~SATl~--~~~~~-~~~~~~~~v~v~~~~-----~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~ 156 (260)
|++++|||+. ++.|+ +|++++..+.+.+.. ..+.++-..+....+ ...+..++..+.....+++||||.|+
T Consensus 273 Qtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K-~~~l~~lL~~~~~~~~~KvIIFc~tk 351 (519)
T KOG0331|consen 273 QTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAK-LRKLGKLLEDISSDSEGKVIIFCETK 351 (519)
T ss_pred cEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHH-HHHHHHHHHHHhccCCCcEEEEecch
Confidence 8999999994 56666 588866555554331 223333333332222 22334444444455688999999999
Q ss_pred HHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc-
Q 038855 157 EEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA- 235 (260)
Q Consensus 157 ~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~- 235 (260)
..|+.+++.++. .++.+..|||+++|+||..+++.|+.|...||||||+|+||||||+|++|||+.||..
T Consensus 352 r~~~~l~~~l~~---------~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~v 422 (519)
T KOG0331|consen 352 RTCDELARNLRR---------KGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNV 422 (519)
T ss_pred hhHHHHHHHHHh---------cCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCH
Confidence 999999999998 3689999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCce
Q 038855 236 RSYDPVKGME 245 (260)
Q Consensus 236 ~~yd~~~g~~ 245 (260)
..|-|+.|.+
T Consensus 423 EdYVHRiGRT 432 (519)
T KOG0331|consen 423 EDYVHRIGRT 432 (519)
T ss_pred HHHHhhcCcc
Confidence 5799988864
No 14
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=8.1e-27 Score=229.64 Aligned_cols=186 Identities=18% Similarity=0.315 Sum_probs=158.4
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCce
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLK 85 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 85 (260)
..++++.++|+|||| |+++++|.-++.+.+...+. +.|
T Consensus 170 l~l~~v~~lVlDEAD-rmLd~Gf~~~i~~I~~~~p~-----------------------------------------~~q 207 (513)
T COG0513 170 LDLSGVETLVLDEAD-RMLDMGFIDDIEKILKALPP-----------------------------------------DRQ 207 (513)
T ss_pred cchhhcCEEEeccHh-hhhcCCCHHHHHHHHHhCCc-----------------------------------------ccE
Confidence 578999999999997 78899888888777776665 789
Q ss_pred EEEEeccCCHH--HHH-hhhCCCcEEEecCce-----eeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHH
Q 038855 86 LIIMSASLDAR--GFS-EYFGCAKAVHVQGRQ-----FPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQE 157 (260)
Q Consensus 86 lil~SATl~~~--~~~-~~~~~~~~v~v~~~~-----~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ 157 (260)
+++||||++.. .++ .|+.++..+.+.... ..++++|......+ .++..+..++....++++|||++|+.
T Consensus 208 tllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~---~k~~~L~~ll~~~~~~~~IVF~~tk~ 284 (513)
T COG0513 208 TLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEE---EKLELLLKLLKDEDEGRVIVFVRTKR 284 (513)
T ss_pred EEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHH---HHHHHHHHHHhcCCCCeEEEEeCcHH
Confidence 99999999653 333 578877777776222 34778887766544 46777888888887889999999999
Q ss_pred HHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc-e
Q 038855 158 EIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA-R 236 (260)
Q Consensus 158 ~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~-~ 236 (260)
.++.++..|.. .++.+..|||+|+|++|.++++.|+.|..+||||||+|+||||||+|++|||+.+|.. .
T Consensus 285 ~~~~l~~~l~~---------~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e 355 (513)
T COG0513 285 LVEELAESLRK---------RGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPE 355 (513)
T ss_pred HHHHHHHHHHH---------CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHH
Confidence 99999999998 4899999999999999999999999999999999999999999999999999999998 5
Q ss_pred eeecCCCce
Q 038855 237 SYDPVKGME 245 (260)
Q Consensus 237 ~yd~~~g~~ 245 (260)
.|.|+.|-+
T Consensus 356 ~yvHRiGRT 364 (513)
T COG0513 356 DYVHRIGRT 364 (513)
T ss_pred HheeccCcc
Confidence 799988754
No 15
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=1.5e-26 Score=218.98 Aligned_cols=185 Identities=16% Similarity=0.248 Sum_probs=151.8
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCce
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLK 85 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 85 (260)
+.|.+++++|+|||| |.+++||...+-+.+...+. ..|
T Consensus 200 f~le~lk~LVlDEAD-rlLd~dF~~~ld~ILk~ip~-----------------------------------------erq 237 (476)
T KOG0330|consen 200 FSLEQLKFLVLDEAD-RLLDMDFEEELDYILKVIPR-----------------------------------------ERQ 237 (476)
T ss_pred ccHHHhHHHhhchHH-hhhhhhhHHHHHHHHHhcCc-----------------------------------------cce
Confidence 567899999999997 89999998876666655565 789
Q ss_pred EEEEeccC--CHHHHHh-hhCCCcEEEecCcee---eeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHH
Q 038855 86 LIIMSASL--DARGFSE-YFGCAKAVHVQGRQF---PVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEI 159 (260)
Q Consensus 86 lil~SATl--~~~~~~~-~~~~~~~v~v~~~~~---~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~v 159 (260)
+++||||| .++.+.. -+.++..+.+..... .++++|+..+..+.. .++..+.+....+++||||+++...
T Consensus 238 t~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~----~yLV~ll~e~~g~s~iVF~~t~~tt 313 (476)
T KOG0330|consen 238 TFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKD----TYLVYLLNELAGNSVIVFCNTCNTT 313 (476)
T ss_pred EEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccc----hhHHHHHHhhcCCcEEEEEeccchH
Confidence 99999999 4556664 344455555554422 367888887776632 2344555555668999999999999
Q ss_pred HHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc-eee
Q 038855 160 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA-RSY 238 (260)
Q Consensus 160 e~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~-~~y 238 (260)
.+++-.|+.+ ++...+|||.|+|+.|...|+.|++|.+.||+|||+|+||+|||.|++|||+++|.. ..|
T Consensus 314 ~~la~~L~~l---------g~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDY 384 (476)
T KOG0330|consen 314 RFLALLLRNL---------GFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDY 384 (476)
T ss_pred HHHHHHHHhc---------CcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHH
Confidence 9999999985 999999999999999999999999999999999999999999999999999999998 679
Q ss_pred ecCCCce
Q 038855 239 DPVKGME 245 (260)
Q Consensus 239 d~~~g~~ 245 (260)
.|+-|.+
T Consensus 385 IHRvGRt 391 (476)
T KOG0330|consen 385 IHRVGRT 391 (476)
T ss_pred HHHcccc
Confidence 9987753
No 16
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.92 E-value=1.2e-24 Score=209.82 Aligned_cols=184 Identities=16% Similarity=0.221 Sum_probs=144.1
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCce
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLK 85 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 85 (260)
..++++++||+||||+ ++++++...+...+...+. ..|
T Consensus 143 ~~l~~l~~lViDEad~-~l~~g~~~~l~~i~~~~~~-----------------------------------------~~q 180 (460)
T PRK11776 143 LDLDALNTLVLDEADR-MLDMGFQDAIDAIIRQAPA-----------------------------------------RRQ 180 (460)
T ss_pred ccHHHCCEEEEECHHH-HhCcCcHHHHHHHHHhCCc-----------------------------------------ccE
Confidence 4578999999999994 5666665554444433443 678
Q ss_pred EEEEeccCCH--HHHHh-hhCCCcEEEecCce--eeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHH
Q 038855 86 LIIMSASLDA--RGFSE-YFGCAKAVHVQGRQ--FPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIE 160 (260)
Q Consensus 86 lil~SATl~~--~~~~~-~~~~~~~v~v~~~~--~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve 160 (260)
+++||||+.. ..+.. ++..+..+.+.... ..++++|....... +...+..+.....++++||||++++.++
T Consensus 181 ~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~----k~~~l~~ll~~~~~~~~lVF~~t~~~~~ 256 (460)
T PRK11776 181 TLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDE----RLPALQRLLLHHQPESCVVFCNTKKECQ 256 (460)
T ss_pred EEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHH----HHHHHHHHHHhcCCCceEEEECCHHHHH
Confidence 9999999943 44444 55666555554432 23666666555443 4455566666667889999999999999
Q ss_pred HHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc-eeee
Q 038855 161 SVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA-RSYD 239 (260)
Q Consensus 161 ~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~-~~yd 239 (260)
.+++.|.+ .++.+..+||++++.+|.++++.|++|..+|||||++++||||||+|++|||+++|.. ..|-
T Consensus 257 ~l~~~L~~---------~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yi 327 (460)
T PRK11776 257 EVADALNA---------QGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHV 327 (460)
T ss_pred HHHHHHHh---------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhh
Confidence 99999988 4889999999999999999999999999999999999999999999999999999997 5688
Q ss_pred cCCCc
Q 038855 240 PVKGM 244 (260)
Q Consensus 240 ~~~g~ 244 (260)
++.|-
T Consensus 328 qR~GR 332 (460)
T PRK11776 328 HRIGR 332 (460)
T ss_pred hhccc
Confidence 87653
No 17
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.92 E-value=3.9e-25 Score=215.32 Aligned_cols=209 Identities=17% Similarity=0.298 Sum_probs=166.4
Q ss_pred CCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCceE
Q 038855 7 YLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLKL 86 (260)
Q Consensus 7 ~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql 86 (260)
-|+++.+||+|||| |++|++|-.++.+.+...+. +|-.+|+|.-+.|+--. |+-..++ .-+|.
T Consensus 393 vl~qctyvvldead-rmiDmgfE~dv~~iL~~mPs---------sn~k~~tde~~~~~~~~------~~~~~~k-~yrqT 455 (673)
T KOG0333|consen 393 VLNQCTYVVLDEAD-RMIDMGFEPDVQKILEQMPS---------SNAKPDTDEKEGEERVR------KNFSSSK-KYRQT 455 (673)
T ss_pred HhccCceEeccchh-hhhcccccHHHHHHHHhCCc---------cccCCCccchhhHHHHH------hhccccc-ceeEE
Confidence 46899999999997 79999999999998888776 56677788777776322 2222222 36899
Q ss_pred EEEeccCCH--HHHH-hhhCCCcEEEecCce--ee-eeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHH
Q 038855 87 IIMSASLDA--RGFS-EYFGCAKAVHVQGRQ--FP-VEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIE 160 (260)
Q Consensus 87 il~SATl~~--~~~~-~~~~~~~~v~v~~~~--~~-v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve 160 (260)
++||||+.+ +.++ .||..+-.+++.... .| +++........+ ....|..+.......+++||+|+++.|+
T Consensus 456 ~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~----k~kkL~eil~~~~~ppiIIFvN~kk~~d 531 (673)
T KOG0333|consen 456 VMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDE----KRKKLIEILESNFDPPIIIFVNTKKGAD 531 (673)
T ss_pred EEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchH----HHHHHHHHHHhCCCCCEEEEEechhhHH
Confidence 999999943 4454 699998888876433 33 454444433333 3444555555556779999999999999
Q ss_pred HHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc-eeee
Q 038855 161 SVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA-RSYD 239 (260)
Q Consensus 161 ~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~-~~yd 239 (260)
.+++.|++. ++.+..|||+..|+||+.+++.|++|...|+||||+|+||||||+|.+|||+.+.+. ..|-
T Consensus 532 ~lAk~LeK~---------g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYt 602 (673)
T KOG0333|consen 532 ALAKILEKA---------GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYT 602 (673)
T ss_pred HHHHHHhhc---------cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHH
Confidence 999999994 899999999999999999999999999999999999999999999999999999999 5699
Q ss_pred cCCCce
Q 038855 240 PVKGME 245 (260)
Q Consensus 240 ~~~g~~ 245 (260)
|+.|-+
T Consensus 603 HRIGRT 608 (673)
T KOG0333|consen 603 HRIGRT 608 (673)
T ss_pred HHhccc
Confidence 988764
No 18
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=6e-25 Score=201.91 Aligned_cols=184 Identities=11% Similarity=0.232 Sum_probs=149.6
Q ss_pred CCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCceEE
Q 038855 8 LSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLKLI 87 (260)
Q Consensus 8 L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qli 87 (260)
-..++++|||||||. ++.++-..+.......++ ..|++
T Consensus 167 tr~vkmlVLDEaDem-L~kgfk~Qiydiyr~lp~-----------------------------------------~~Qvv 204 (400)
T KOG0328|consen 167 TRAVKMLVLDEADEM-LNKGFKEQIYDIYRYLPP-----------------------------------------GAQVV 204 (400)
T ss_pred ccceeEEEeccHHHH-HHhhHHHHHHHHHHhCCC-----------------------------------------CceEE
Confidence 357899999999873 333444444444444454 78999
Q ss_pred EEeccCCHHHHH---hhhCCCcEEEecCceee---eeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHH
Q 038855 88 IMSASLDARGFS---EYFGCAKAVHVQGRQFP---VEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIES 161 (260)
Q Consensus 88 l~SATl~~~~~~---~~~~~~~~v~v~~~~~~---v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve~ 161 (260)
++|||++-+.+. +|+.++.-+-+.....| ++++|+.....++ ++.+++.++....-.+.+|||||+..+++
T Consensus 205 ~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~Eew---KfdtLcdLYd~LtItQavIFcnTk~kVdw 281 (400)
T KOG0328|consen 205 LVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEW---KFDTLCDLYDTLTITQAVIFCNTKRKVDW 281 (400)
T ss_pred EEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhh---hHhHHHHHhhhhehheEEEEecccchhhH
Confidence 999999655443 57777766666655555 5677877655543 67888888887777889999999999999
Q ss_pred HHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCcccee-eec
Q 038855 162 VERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARS-YDP 240 (260)
Q Consensus 162 v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~~-yd~ 240 (260)
+.+.+++ ..+.+..+||+|++++|.+++..|+.|+.+||++||+-+||+|+|.|.+|||+++|..++ |-|
T Consensus 282 Ltekm~~---------~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIH 352 (400)
T KOG0328|consen 282 LTEKMRE---------ANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIH 352 (400)
T ss_pred HHHHHHh---------hCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhh
Confidence 9999998 489999999999999999999999999999999999999999999999999999999964 999
Q ss_pred CCCce
Q 038855 241 VKGME 245 (260)
Q Consensus 241 ~~g~~ 245 (260)
+.|.+
T Consensus 353 RIGRS 357 (400)
T KOG0328|consen 353 RIGRS 357 (400)
T ss_pred hhccc
Confidence 88754
No 19
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.91 E-value=2.8e-23 Score=198.31 Aligned_cols=186 Identities=14% Similarity=0.186 Sum_probs=137.8
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCce
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLK 85 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 85 (260)
..++++++||+||||. .++.++...+...+...+. ....+
T Consensus 153 ~~l~~v~~lViDEad~-l~~~~f~~~i~~i~~~~~~---------------------------------------~~~~~ 192 (423)
T PRK04837 153 INLGAIQVVVLDEADR-MFDLGFIKDIRWLFRRMPP---------------------------------------ANQRL 192 (423)
T ss_pred cccccccEEEEecHHH-HhhcccHHHHHHHHHhCCC---------------------------------------cccee
Confidence 4578999999999994 4555544443222222221 01456
Q ss_pred EEEEeccCCHH--HHH-hhhCCCcEEEecCcee---eeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHH
Q 038855 86 LIIMSASLDAR--GFS-EYFGCAKAVHVQGRQF---PVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEI 159 (260)
Q Consensus 86 lil~SATl~~~--~~~-~~~~~~~~v~v~~~~~---~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~v 159 (260)
.++||||+... .+. .++.++..+.+..... .+.+.+..... ..+...+..+.....++++||||+++..+
T Consensus 193 ~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~----~~k~~~l~~ll~~~~~~~~lVF~~t~~~~ 268 (423)
T PRK04837 193 NMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSN----EEKMRLLQTLIEEEWPDRAIIFANTKHRC 268 (423)
T ss_pred EEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCH----HHHHHHHHHHHHhcCCCeEEEEECCHHHH
Confidence 79999999643 333 5666666665543321 23333322211 23455566666666678999999999999
Q ss_pred HHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc-eee
Q 038855 160 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA-RSY 238 (260)
Q Consensus 160 e~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~-~~y 238 (260)
+.+++.|.. .++.+..+||++++++|.++++.|++|..+||||||+++||||||+|++||++++|.. ..|
T Consensus 269 ~~l~~~L~~---------~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~y 339 (423)
T PRK04837 269 EEIWGHLAA---------DGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDY 339 (423)
T ss_pred HHHHHHHHh---------CCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhhe
Confidence 999999987 4889999999999999999999999999999999999999999999999999999987 579
Q ss_pred ecCCCc
Q 038855 239 DPVKGM 244 (260)
Q Consensus 239 d~~~g~ 244 (260)
-++.|-
T Consensus 340 iqR~GR 345 (423)
T PRK04837 340 VHRIGR 345 (423)
T ss_pred Eecccc
Confidence 888775
No 20
>PTZ00110 helicase; Provisional
Probab=99.90 E-value=1.3e-23 Score=208.04 Aligned_cols=184 Identities=17% Similarity=0.208 Sum_probs=134.2
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCce
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLK 85 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 85 (260)
..|+++++||||||| |++++++...+.+.+...++ ..|
T Consensus 273 ~~l~~v~~lViDEAd-~mld~gf~~~i~~il~~~~~-----------------------------------------~~q 310 (545)
T PTZ00110 273 TNLRRVTYLVLDEAD-RMLDMGFEPQIRKIVSQIRP-----------------------------------------DRQ 310 (545)
T ss_pred CChhhCcEEEeehHH-hhhhcchHHHHHHHHHhCCC-----------------------------------------CCe
Confidence 457899999999999 56777766655554444444 679
Q ss_pred EEEEeccCCH--HHHHh-hhCC-CcEEEecCce----eeeeEEEeeCCCcchHHHHHHHHHHHHhhc--CCCCEEEEeCC
Q 038855 86 LIIMSASLDA--RGFSE-YFGC-AKAVHVQGRQ----FPVEILYTLYPEPDFLDATLITIFQVHLDE--APGDILVFLTG 155 (260)
Q Consensus 86 lil~SATl~~--~~~~~-~~~~-~~~v~v~~~~----~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~--~~g~iLVFl~~ 155 (260)
+++||||+.. ..+.+ ++.. +..+.+.... ..+++.+....... +...+..+.... ..+++||||++
T Consensus 311 ~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~----k~~~L~~ll~~~~~~~~k~LIF~~t 386 (545)
T PTZ00110 311 TLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHE----KRGKLKMLLQRIMRDGDKILIFVET 386 (545)
T ss_pred EEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechh----HHHHHHHHHHHhcccCCeEEEEecC
Confidence 9999999943 34444 4443 2233332211 12333333222222 222233332221 46799999999
Q ss_pred HHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc
Q 038855 156 QEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA 235 (260)
Q Consensus 156 ~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~ 235 (260)
+..++.+++.|+. .++.+..+||++++++|.++++.|+.|..+|||||++++||||||+|++||++++|..
T Consensus 387 ~~~a~~l~~~L~~---------~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s 457 (545)
T PTZ00110 387 KKGADFLTKELRL---------DGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQ 457 (545)
T ss_pred hHHHHHHHHHHHH---------cCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCC
Confidence 9999999999987 4889999999999999999999999999999999999999999999999999999998
Q ss_pred e-eeecCCCc
Q 038855 236 R-SYDPVKGM 244 (260)
Q Consensus 236 ~-~yd~~~g~ 244 (260)
. .|-++.|.
T Consensus 458 ~~~yvqRiGR 467 (545)
T PTZ00110 458 IEDYVHRIGR 467 (545)
T ss_pred HHHHHHHhcc
Confidence 4 58886663
No 21
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.90 E-value=3e-23 Score=200.66 Aligned_cols=184 Identities=14% Similarity=0.202 Sum_probs=138.4
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCce
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLK 85 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 85 (260)
..|+++++||||||| +.++.++...+...+...+. ..|
T Consensus 145 ~~l~~v~~lViDEah-~ll~~~~~~~i~~il~~l~~-----------------------------------------~~q 182 (456)
T PRK10590 145 VKLDQVEILVLDEAD-RMLDMGFIHDIRRVLAKLPA-----------------------------------------KRQ 182 (456)
T ss_pred cccccceEEEeecHH-HHhccccHHHHHHHHHhCCc-----------------------------------------cCe
Confidence 368899999999999 45565555444443333333 578
Q ss_pred EEEEeccCCH--HHHH-hhhCCCcEEEecCcee---eeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHH
Q 038855 86 LIIMSASLDA--RGFS-EYFGCAKAVHVQGRQF---PVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEI 159 (260)
Q Consensus 86 lil~SATl~~--~~~~-~~~~~~~~v~v~~~~~---~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~v 159 (260)
+++||||+.. ..+. .++.++..+.+..... .+.+++...... .+...+..+.......++||||+++..+
T Consensus 183 ~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~k~~~l~~l~~~~~~~~~lVF~~t~~~~ 258 (456)
T PRK10590 183 NLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKK----RKRELLSQMIGKGNWQQVLVFTRTKHGA 258 (456)
T ss_pred EEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHH----HHHHHHHHHHHcCCCCcEEEEcCcHHHH
Confidence 9999999954 3444 5666666555543322 234444332222 2333444455555567899999999999
Q ss_pred HHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccce-ee
Q 038855 160 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKAR-SY 238 (260)
Q Consensus 160 e~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~-~y 238 (260)
+.+++.|.+ .++.+..+||++++++|.++++.|+.|..+|||||+++++|||||+|++||++++|... .|
T Consensus 259 ~~l~~~L~~---------~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~y 329 (456)
T PRK10590 259 NHLAEQLNK---------DGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDY 329 (456)
T ss_pred HHHHHHHHH---------CCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHh
Confidence 999999987 48899999999999999999999999999999999999999999999999999999984 78
Q ss_pred ecCCCc
Q 038855 239 DPVKGM 244 (260)
Q Consensus 239 d~~~g~ 244 (260)
-++.|-
T Consensus 330 vqR~GR 335 (456)
T PRK10590 330 VHRIGR 335 (456)
T ss_pred hhhccc
Confidence 887764
No 22
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.90 E-value=3.7e-23 Score=197.65 Aligned_cols=185 Identities=15% Similarity=0.205 Sum_probs=136.9
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCce
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLK 85 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 85 (260)
..+.++++||+|||| +++++.+...+.......+. ..|
T Consensus 143 ~~~~~v~~lViDEah-~~l~~~~~~~~~~i~~~~~~-----------------------------------------~~q 180 (434)
T PRK11192 143 FDCRAVETLILDEAD-RMLDMGFAQDIETIAAETRW-----------------------------------------RKQ 180 (434)
T ss_pred cCcccCCEEEEECHH-HHhCCCcHHHHHHHHHhCcc-----------------------------------------ccE
Confidence 357889999999999 45555544443333323333 568
Q ss_pred EEEEeccCCHH---HHHhhh-CCCcEEEecCce---eeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHH
Q 038855 86 LIIMSASLDAR---GFSEYF-GCAKAVHVQGRQ---FPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEE 158 (260)
Q Consensus 86 lil~SATl~~~---~~~~~~-~~~~~v~v~~~~---~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ 158 (260)
+++||||+... .+.+.+ ..+..+.+.... ..+.+++..... ...+...+..+......+++||||++++.
T Consensus 181 ~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~---~~~k~~~l~~l~~~~~~~~~lVF~~s~~~ 257 (434)
T PRK11192 181 TLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADD---LEHKTALLCHLLKQPEVTRSIVFVRTRER 257 (434)
T ss_pred EEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCC---HHHHHHHHHHHHhcCCCCeEEEEeCChHH
Confidence 99999999644 344433 333334333221 124444443322 22355556666665567899999999999
Q ss_pred HHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc-ee
Q 038855 159 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA-RS 237 (260)
Q Consensus 159 ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~-~~ 237 (260)
++.+++.|.+ .++.+..+||++++.+|..+++.|+.|..+|||||+++++|||+|+|++||++++|.. ..
T Consensus 258 ~~~l~~~L~~---------~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~ 328 (434)
T PRK11192 258 VHELAGWLRK---------AGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADT 328 (434)
T ss_pred HHHHHHHHHh---------CCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHH
Confidence 9999999987 4889999999999999999999999999999999999999999999999999999987 56
Q ss_pred eecCCCc
Q 038855 238 YDPVKGM 244 (260)
Q Consensus 238 yd~~~g~ 244 (260)
|-++.|.
T Consensus 329 yiqr~GR 335 (434)
T PRK11192 329 YLHRIGR 335 (434)
T ss_pred Hhhcccc
Confidence 8887764
No 23
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.90 E-value=3.4e-23 Score=208.60 Aligned_cols=184 Identities=14% Similarity=0.172 Sum_probs=143.2
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCce
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLK 85 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 85 (260)
..|+++++|||||||+ ++++.+...+...+...+. ..|
T Consensus 145 l~l~~l~~lVlDEAd~-ml~~gf~~di~~Il~~lp~-----------------------------------------~~q 182 (629)
T PRK11634 145 LDLSKLSGLVLDEADE-MLRMGFIEDVETIMAQIPE-----------------------------------------GHQ 182 (629)
T ss_pred cchhhceEEEeccHHH-HhhcccHHHHHHHHHhCCC-----------------------------------------CCe
Confidence 4588999999999996 3555555555444444444 678
Q ss_pred EEEEeccCCH--HHH-HhhhCCCcEEEecCcee---eeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHH
Q 038855 86 LIIMSASLDA--RGF-SEYFGCAKAVHVQGRQF---PVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEI 159 (260)
Q Consensus 86 lil~SATl~~--~~~-~~~~~~~~~v~v~~~~~---~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~v 159 (260)
+++||||+.. ..+ .+|+.++..+.+..... .+.+.|......+ +...+..+...+....+||||+|+..+
T Consensus 183 ~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~----k~~~L~~~L~~~~~~~~IVF~~tk~~a 258 (629)
T PRK11634 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMR----KNEALVRFLEAEDFDAAIIFVRTKNAT 258 (629)
T ss_pred EEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhh----HHHHHHHHHHhcCCCCEEEEeccHHHH
Confidence 9999999943 333 45777777776654432 3455555444333 344455555566678999999999999
Q ss_pred HHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc-eee
Q 038855 160 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA-RSY 238 (260)
Q Consensus 160 e~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~-~~y 238 (260)
+.+++.|.. .++.+..+||++++++|.++++.|+.|+.+|||||+++++|||+|+|++|||+++|.. ..|
T Consensus 259 ~~l~~~L~~---------~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~y 329 (629)
T PRK11634 259 LEVAEALER---------NGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESY 329 (629)
T ss_pred HHHHHHHHh---------CCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHH
Confidence 999999988 4899999999999999999999999999999999999999999999999999999987 568
Q ss_pred ecCCCc
Q 038855 239 DPVKGM 244 (260)
Q Consensus 239 d~~~g~ 244 (260)
-++.|.
T Consensus 330 vqRiGR 335 (629)
T PRK11634 330 VHRIGR 335 (629)
T ss_pred HHHhcc
Confidence 776664
No 24
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=4.1e-23 Score=199.22 Aligned_cols=185 Identities=17% Similarity=0.238 Sum_probs=153.8
Q ss_pred CCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCceEE
Q 038855 8 LSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLKLI 87 (260)
Q Consensus 8 L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qli 87 (260)
+..++++|||||| |.++++|--.+-..+...++ ++++-
T Consensus 155 ~rsLe~LVLDEAD-rLldmgFe~~~n~ILs~LPK-----------------------------------------QRRTG 192 (567)
T KOG0345|consen 155 FRSLEILVLDEAD-RLLDMGFEASVNTILSFLPK-----------------------------------------QRRTG 192 (567)
T ss_pred ccccceEEecchH-hHhcccHHHHHHHHHHhccc-----------------------------------------ccccc
Confidence 5589999999997 89999888877777777776 78899
Q ss_pred EEeccCC--HHHHHh-hhCCCcEEEecCce---ee--eeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHH
Q 038855 88 IMSASLD--ARGFSE-YFGCAKAVHVQGRQ---FP--VEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEI 159 (260)
Q Consensus 88 l~SATl~--~~~~~~-~~~~~~~v~v~~~~---~~--v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~v 159 (260)
|||||.. ++.+.. .+.++.-+.+.... -| +..+|+.+.... ++..++++......+++|||+||++.+
T Consensus 193 LFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~e----K~~~lv~~L~~~~~kK~iVFF~TCasV 268 (567)
T KOG0345|consen 193 LFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADE----KLSQLVHLLNNNKDKKCIVFFPTCASV 268 (567)
T ss_pred cccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHH----HHHHHHHHHhccccccEEEEecCcchH
Confidence 9999993 344554 56777666665443 34 777888776544 555566666667788999999999999
Q ss_pred HHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccce-ee
Q 038855 160 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKAR-SY 238 (260)
Q Consensus 160 e~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~-~y 238 (260)
+.....+...+ .+..++.+||.+.+.+|.++++.|......|++|||+|+||||||+|++||+++.|+.+ +|
T Consensus 269 eYf~~~~~~~l-------~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~F 341 (567)
T KOG0345|consen 269 EYFGKLFSRLL-------KKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSF 341 (567)
T ss_pred HHHHHHHHHHh-------CCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHH
Confidence 99999998874 47899999999999999999999999889999999999999999999999999999995 68
Q ss_pred ecCCCce
Q 038855 239 DPVKGME 245 (260)
Q Consensus 239 d~~~g~~ 245 (260)
.|+.|.+
T Consensus 342 vHR~GRT 348 (567)
T KOG0345|consen 342 VHRCGRT 348 (567)
T ss_pred Hhhcchh
Confidence 8888864
No 25
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.89 E-value=2.3e-22 Score=200.41 Aligned_cols=149 Identities=16% Similarity=0.232 Sum_probs=116.0
Q ss_pred CceEEEEeccCCHHH---HHhhhCCCcEEEecCcee---eeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCH
Q 038855 83 PLKLIIMSASLDARG---FSEYFGCAKAVHVQGRQF---PVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQ 156 (260)
Q Consensus 83 ~~qlil~SATl~~~~---~~~~~~~~~~v~v~~~~~---~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~ 156 (260)
..|+++||||+..+. ...++..+..+.+..... .+.+.+..... ..+...+..++......++||||+++
T Consensus 192 ~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~----~~k~~~L~~ll~~~~~~k~LVF~nt~ 267 (572)
T PRK04537 192 TRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPAD----EEKQTLLLGLLSRSEGARTMVFVNTK 267 (572)
T ss_pred CceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCH----HHHHHHHHHHHhcccCCcEEEEeCCH
Confidence 468999999996433 335666654444433222 13333333222 23445566666666678999999999
Q ss_pred HHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc-
Q 038855 157 EEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA- 235 (260)
Q Consensus 157 ~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~- 235 (260)
..++.+++.|.+ .++.+..+||++++.+|.++++.|++|..+|||||+++++|||+|+|++||++++|..
T Consensus 268 ~~ae~l~~~L~~---------~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~ 338 (572)
T PRK04537 268 AFVERVARTLER---------HGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDA 338 (572)
T ss_pred HHHHHHHHHHHH---------cCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCH
Confidence 999999999987 3889999999999999999999999999999999999999999999999999999987
Q ss_pred eeeecCCCc
Q 038855 236 RSYDPVKGM 244 (260)
Q Consensus 236 ~~yd~~~g~ 244 (260)
..|-++.|-
T Consensus 339 ~~yvqRiGR 347 (572)
T PRK04537 339 EDYVHRIGR 347 (572)
T ss_pred HHHhhhhcc
Confidence 468887774
No 26
>PTZ00424 helicase 45; Provisional
Probab=99.88 E-value=6.4e-22 Score=185.86 Aligned_cols=150 Identities=10% Similarity=0.243 Sum_probs=115.9
Q ss_pred CceEEEEeccCCHHH--HH-hhhCCCcEEEecCcee---eeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCH
Q 038855 83 PLKLIIMSASLDARG--FS-EYFGCAKAVHVQGRQF---PVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQ 156 (260)
Q Consensus 83 ~~qlil~SATl~~~~--~~-~~~~~~~~v~v~~~~~---~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~ 156 (260)
..|+++||||+..+. +. .|+.++..+.+..... .+.+++....... .....+..+.......++||||+++
T Consensus 201 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~ivF~~t~ 277 (401)
T PTZ00424 201 DVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEE---WKFDTLCDLYETLTITQAIIYCNTR 277 (401)
T ss_pred CcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHH---HHHHHHHHHHHhcCCCeEEEEecCc
Confidence 679999999995433 22 4666655554444322 2344444433222 2344455555555567899999999
Q ss_pred HHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc-
Q 038855 157 EEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA- 235 (260)
Q Consensus 157 ~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~- 235 (260)
+.++.+++.|.+ .++.+..+||++++++|..+++.|+.|+.+|||||+++++|+|+|++++||++++|..
T Consensus 278 ~~~~~l~~~l~~---------~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~ 348 (401)
T PTZ00424 278 RKVDYLTKKMHE---------RDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASP 348 (401)
T ss_pred HHHHHHHHHHHH---------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCH
Confidence 999999999987 3789999999999999999999999999999999999999999999999999999987
Q ss_pred eeeecCCCc
Q 038855 236 RSYDPVKGM 244 (260)
Q Consensus 236 ~~yd~~~g~ 244 (260)
..|-.+.|.
T Consensus 349 ~~y~qr~GR 357 (401)
T PTZ00424 349 ENYIHRIGR 357 (401)
T ss_pred HHEeecccc
Confidence 578777664
No 27
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.88 E-value=3.6e-22 Score=196.49 Aligned_cols=185 Identities=16% Similarity=0.175 Sum_probs=133.5
Q ss_pred CCCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCc
Q 038855 5 DPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPL 84 (260)
Q Consensus 5 d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (260)
...|+++++||+||||. +++.++...+.+.+ ...+ ..
T Consensus 265 ~~~l~~v~~lViDEad~-ml~~gf~~~i~~i~-~~l~-----------------------------------------~~ 301 (518)
T PLN00206 265 DIELDNVSVLVLDEVDC-MLERGFRDQVMQIF-QALS-----------------------------------------QP 301 (518)
T ss_pred CccchheeEEEeecHHH-HhhcchHHHHHHHH-HhCC-----------------------------------------CC
Confidence 34688999999999994 45544433333222 2222 56
Q ss_pred eEEEEeccCCH--HHHHhh-hCCCcEEEecCcee---eeeEEEeeCCCcchHHHHHHHHHHHHhh--cCCCCEEEEeCCH
Q 038855 85 KLIIMSASLDA--RGFSEY-FGCAKAVHVQGRQF---PVEILYTLYPEPDFLDATLITIFQVHLD--EAPGDILVFLTGQ 156 (260)
Q Consensus 85 qlil~SATl~~--~~~~~~-~~~~~~v~v~~~~~---~v~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~g~iLVFl~~~ 156 (260)
|+++||||+.. +.+... +.+...+.+..... .+.+.+......+ ....++.+... ...+++|||++++
T Consensus 302 q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~----k~~~l~~~l~~~~~~~~~~iVFv~s~ 377 (518)
T PLN00206 302 QVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQ----KKQKLFDILKSKQHFKPPAVVFVSSR 377 (518)
T ss_pred cEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchh----HHHHHHHHHHhhcccCCCEEEEcCCc
Confidence 89999999943 455554 44444555543322 2344444433332 22233333332 2246899999999
Q ss_pred HHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc-
Q 038855 157 EEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA- 235 (260)
Q Consensus 157 ~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~- 235 (260)
..++.+++.|... .++.+..+||++++++|.++++.|+.|..+|||||++++||||+|+|++||++++|..
T Consensus 378 ~~a~~l~~~L~~~--------~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~ 449 (518)
T PLN00206 378 LGADLLANAITVV--------TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTI 449 (518)
T ss_pred hhHHHHHHHHhhc--------cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCH
Confidence 9999999988763 3788999999999999999999999999999999999999999999999999999988
Q ss_pred eeeecCCCc
Q 038855 236 RSYDPVKGM 244 (260)
Q Consensus 236 ~~yd~~~g~ 244 (260)
..|-++.|.
T Consensus 450 ~~yihRiGR 458 (518)
T PLN00206 450 KEYIHQIGR 458 (518)
T ss_pred HHHHHhccc
Confidence 578887774
No 28
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.87 E-value=1.2e-21 Score=190.03 Aligned_cols=148 Identities=16% Similarity=0.278 Sum_probs=113.7
Q ss_pred CceEEEEeccCCH--HHHH-hhhCCCcEEEecCcee---eeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCH
Q 038855 83 PLKLIIMSASLDA--RGFS-EYFGCAKAVHVQGRQF---PVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQ 156 (260)
Q Consensus 83 ~~qlil~SATl~~--~~~~-~~~~~~~~v~v~~~~~---~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~ 156 (260)
..|+++||||+.. ..+. .|+.++..+.+..... .+++++......+ +...+..+.......++||||+++
T Consensus 270 ~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~----k~~~l~~ll~~~~~~~~IVF~~s~ 345 (475)
T PRK01297 270 ERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSD----KYKLLYNLVTQNPWERVMVFANRK 345 (475)
T ss_pred CceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchh----HHHHHHHHHHhcCCCeEEEEeCCH
Confidence 4689999999843 3333 4666665555543321 2333333333222 334455555555567899999999
Q ss_pred HHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc-
Q 038855 157 EEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA- 235 (260)
Q Consensus 157 ~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~- 235 (260)
+.++.+++.|.. .++.+..+||++++++|.++++.|+.|..+||||||++++|||||+|++||++|+|..
T Consensus 346 ~~~~~l~~~L~~---------~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~ 416 (475)
T PRK01297 346 DEVRRIEERLVK---------DGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDP 416 (475)
T ss_pred HHHHHHHHHHHH---------cCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCH
Confidence 999999999976 4788999999999999999999999999999999999999999999999999999987
Q ss_pred eeeecCCC
Q 038855 236 RSYDPVKG 243 (260)
Q Consensus 236 ~~yd~~~g 243 (260)
..|-++.|
T Consensus 417 ~~y~Qr~G 424 (475)
T PRK01297 417 DDYVHRIG 424 (475)
T ss_pred HHHHHhhC
Confidence 56877665
No 29
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.87 E-value=2.7e-21 Score=197.92 Aligned_cols=158 Identities=16% Similarity=0.138 Sum_probs=111.9
Q ss_pred CceEEEEeccC-CHHHHHh-hhCCCcEEEecCceee--eeEEEeeCCC-------------cchHHHHHHHHHHHHhhcC
Q 038855 83 PLKLIIMSASL-DARGFSE-YFGCAKAVHVQGRQFP--VEILYTLYPE-------------PDFLDATLITIFQVHLDEA 145 (260)
Q Consensus 83 ~~qlil~SATl-~~~~~~~-~~~~~~~v~v~~~~~~--v~~~~~~~~~-------------~~~~~~~~~~l~~i~~~~~ 145 (260)
++|++++|||+ ++..+.+ +++.+ +..+.....| ...+....+. ......+...+..+.. .
T Consensus 194 ~~q~i~~SATi~n~~~~~~~l~g~~-~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~--~ 270 (742)
T TIGR03817 194 SPVFVLASATTADPAAAASRLIGAP-VVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVA--E 270 (742)
T ss_pred CCEEEEEecCCCCHHHHHHHHcCCC-eEEECCCCCCcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHH--C
Confidence 67999999999 5555554 55543 4334332222 1222221111 1112233334444443 2
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCce
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIK 225 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~ 225 (260)
..++|||++|+..++.+++.|.+.+..... .-+..+..+||++++++|.++++.|+.|+.++|||||++|+|||||+|+
T Consensus 271 ~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~-~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd 349 (742)
T TIGR03817 271 GARTLTFVRSRRGAELVAAIARRLLGEVDP-DLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLD 349 (742)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhcc-ccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCccccc
Confidence 579999999999999999999886543211 1145788999999999999999999999999999999999999999999
Q ss_pred EEEeCCCccc-eeeecCCCc
Q 038855 226 YVIDPGFVKA-RSYDPVKGM 244 (260)
Q Consensus 226 ~VId~g~~~~-~~yd~~~g~ 244 (260)
+||++|+|.. .+|-++.|.
T Consensus 350 ~VI~~~~P~s~~~y~qRiGR 369 (742)
T TIGR03817 350 AVVIAGFPGTRASLWQQAGR 369 (742)
T ss_pred EEEEeCCCCCHHHHHHhccc
Confidence 9999999987 467776553
No 30
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.86 E-value=6.6e-22 Score=191.47 Aligned_cols=185 Identities=14% Similarity=0.184 Sum_probs=146.5
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCce
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLK 85 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 85 (260)
+....++++|+|||| |.++++|-.++.+.+...+. .+|
T Consensus 226 f~~r~~k~lvlDEAD-rlLd~GF~~di~~Ii~~lpk-----------------------------------------~rq 263 (543)
T KOG0342|consen 226 FLFRNLKCLVLDEAD-RLLDIGFEEDVEQIIKILPK-----------------------------------------QRQ 263 (543)
T ss_pred chhhccceeEeecch-hhhhcccHHHHHHHHHhccc-----------------------------------------cce
Confidence 344667899999997 88899888888777776666 789
Q ss_pred EEEEeccCCH--HHHHh-hhC-CCcEEEecCce-----eeeeEEEeeCCCcchHHHHHHHHHHHHhhcCC-CCEEEEeCC
Q 038855 86 LIIMSASLDA--RGFSE-YFG-CAKAVHVQGRQ-----FPVEILYTLYPEPDFLDATLITIFQVHLDEAP-GDILVFLTG 155 (260)
Q Consensus 86 lil~SATl~~--~~~~~-~~~-~~~~v~v~~~~-----~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~-g~iLVFl~~ 155 (260)
.++||||.+. +.++. -++ ++..+.+.... .-+++-|+..+.... +-.++.+.+.... .+|+|||+|
T Consensus 264 t~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~----f~ll~~~LKk~~~~~KiiVF~sT 339 (543)
T KOG0342|consen 264 TLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSR----FSLLYTFLKKNIKRYKIIVFFST 339 (543)
T ss_pred eeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccch----HHHHHHHHHHhcCCceEEEEech
Confidence 9999999953 44554 232 23344433221 236777887776553 3334444444433 899999999
Q ss_pred HHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc
Q 038855 156 QEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA 235 (260)
Q Consensus 156 ~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~ 235 (260)
+..+..++++|... ++++..|||+++|..|-.++..|.....-||||||+|+||+|+|+|++||.+|.|..
T Consensus 340 ~~~vk~~~~lL~~~---------dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d 410 (543)
T KOG0342|consen 340 CMSVKFHAELLNYI---------DLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSD 410 (543)
T ss_pred hhHHHHHHHHHhhc---------CCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCC
Confidence 99999999999974 899999999999999999999999999999999999999999999999999999999
Q ss_pred e-eeecCCCce
Q 038855 236 R-SYDPVKGME 245 (260)
Q Consensus 236 ~-~yd~~~g~~ 245 (260)
+ .|.|+-|.+
T Consensus 411 ~~~YIHRvGRT 421 (543)
T KOG0342|consen 411 PEQYIHRVGRT 421 (543)
T ss_pred HHHHHHHhccc
Confidence 5 799988764
No 31
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=9.9e-22 Score=187.76 Aligned_cols=185 Identities=14% Similarity=0.198 Sum_probs=147.2
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCce
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLK 85 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 85 (260)
-.|+.++++|||||| |+++|+|-..+-|.++..|+ ++|
T Consensus 363 i~l~siTYlVlDEAD-rMLDMgFEpqIrkilldiRP-----------------------------------------DRq 400 (629)
T KOG0336|consen 363 INLASITYLVLDEAD-RMLDMGFEPQIRKILLDIRP-----------------------------------------DRQ 400 (629)
T ss_pred eeeeeeEEEEecchh-hhhcccccHHHHHHhhhcCC-----------------------------------------cce
Confidence 468899999999997 89999999999999999998 899
Q ss_pred EEEEeccCC--HHHHH-hhhCCCcEEEecCc----eeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHH
Q 038855 86 LIIMSASLD--ARGFS-EYFGCAKAVHVQGR----QFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEE 158 (260)
Q Consensus 86 lil~SATl~--~~~~~-~~~~~~~~v~v~~~----~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ 158 (260)
+++.|||.. ++.+. .|+..+.++-+..- ...|++.++-....+++ .....+.+ ......+++|||..+.-
T Consensus 401 tvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~-~~~~~f~~--~ms~ndKvIiFv~~K~~ 477 (629)
T KOG0336|consen 401 TVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKL-EIVQFFVA--NMSSNDKVIIFVSRKVM 477 (629)
T ss_pred eeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHH-HHHHHHHH--hcCCCceEEEEEechhh
Confidence 999999993 56666 58887766655432 23566666544444433 12222222 22346789999999988
Q ss_pred HHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc-ee
Q 038855 159 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA-RS 237 (260)
Q Consensus 159 ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~-~~ 237 (260)
++.+...+.- .++.+-.|||.-.|..|+++++.|+.|..+||||||+|+||+|+|+|+||+|+.||.. .+
T Consensus 478 AD~LSSd~~l---------~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIee 548 (629)
T KOG0336|consen 478 ADHLSSDFCL---------KGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEE 548 (629)
T ss_pred hhhccchhhh---------cccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHH
Confidence 7766655544 5899999999999999999999999999999999999999999999999999999998 57
Q ss_pred eecCCCc
Q 038855 238 YDPVKGM 244 (260)
Q Consensus 238 yd~~~g~ 244 (260)
|-|+-|-
T Consensus 549 YVHRvGr 555 (629)
T KOG0336|consen 549 YVHRVGR 555 (629)
T ss_pred HHHHhcc
Confidence 8886553
No 32
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=1.8e-21 Score=182.95 Aligned_cols=187 Identities=18% Similarity=0.325 Sum_probs=136.0
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCce
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLK 85 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 85 (260)
+.+.+++++|+|||| |.+..++-.. |+-+...-+ +++|
T Consensus 149 ~~~~rlkflVlDEAD-rvL~~~f~d~-L~~i~e~lP----------------------------------------~~RQ 186 (442)
T KOG0340|consen 149 WIFQRLKFLVLDEAD-RVLAGCFPDI-LEGIEECLP----------------------------------------KPRQ 186 (442)
T ss_pred hhhhceeeEEecchh-hhhccchhhH-HhhhhccCC----------------------------------------Cccc
Confidence 557899999999997 6666544332 222222222 2689
Q ss_pred EEEEeccCCHHHHHhhhCCCcE------EEecCceee---eeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCH
Q 038855 86 LIIMSASLDARGFSEYFGCAKA------VHVQGRQFP---VEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQ 156 (260)
Q Consensus 86 lil~SATl~~~~~~~~~~~~~~------v~v~~~~~~---v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~ 156 (260)
.++||||+ .+.+++.++++.. +......-. +.+.|+..+.... ++.+.-++.-...+..++++||+++.
T Consensus 187 tLlfSATi-td~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vk-daYLv~~Lr~~~~~~~~simIFvntt 264 (442)
T KOG0340|consen 187 TLLFSATI-TDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVK-DAYLVHLLRDFENKENGSIMIFVNTT 264 (442)
T ss_pred eEEEEeeh-hhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhh-HHHHHHHHhhhhhccCceEEEEeehh
Confidence 99999999 3455556655421 222111122 3344554443321 22222333444444688999999999
Q ss_pred HHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccce
Q 038855 157 EEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKAR 236 (260)
Q Consensus 157 ~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~ 236 (260)
-+++.+...|..+ .+.++.+||-|+|.+|...+..|+.+..+||||||+|+||+|||.|+.|||+.+|..+
T Consensus 265 r~cQ~l~~~l~~l---------e~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P 335 (442)
T KOG0340|consen 265 RECQLLSMTLKNL---------EVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDP 335 (442)
T ss_pred HHHHHHHHHHhhh---------ceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCH
Confidence 9999999999985 8999999999999999999999999999999999999999999999999999999995
Q ss_pred -eeecCCCce
Q 038855 237 -SYDPVKGME 245 (260)
Q Consensus 237 -~yd~~~g~~ 245 (260)
.|-|+-|.+
T Consensus 336 ~~yiHRvGRt 345 (442)
T KOG0340|consen 336 KDYIHRVGRT 345 (442)
T ss_pred HHHHHhhcch
Confidence 799876653
No 33
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=5.6e-21 Score=180.66 Aligned_cols=150 Identities=15% Similarity=0.205 Sum_probs=128.7
Q ss_pred CceEEEEeccCC--HHHHH-hhhCCCcEEEecCce---eeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCH
Q 038855 83 PLKLIIMSASLD--ARGFS-EYFGCAKAVHVQGRQ---FPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQ 156 (260)
Q Consensus 83 ~~qlil~SATl~--~~~~~-~~~~~~~~v~v~~~~---~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~ 156 (260)
..|+++||||.+ +..|. +..+++..+.+.... ++|+++|+.++..+ .+...+..++.-..-|+.+|||.|+
T Consensus 264 ~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~---~K~~~l~~lyg~~tigqsiIFc~tk 340 (477)
T KOG0332|consen 264 NQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRD---DKYQALVNLYGLLTIGQSIIFCHTK 340 (477)
T ss_pred cceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchh---hHHHHHHHHHhhhhhhheEEEEeeh
Confidence 789999999994 33455 467888888776653 68999999998765 4666677777766779999999999
Q ss_pred HHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc-
Q 038855 157 EEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA- 235 (260)
Q Consensus 157 ~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~- 235 (260)
..+.++++.|.. .+..+..+||.|+.++|.+++..|+.|+.+|||+||+.+||||++.|..|||+.+|-.
T Consensus 341 ~ta~~l~~~m~~---------~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~ 411 (477)
T KOG0332|consen 341 ATAMWLYEEMRA---------EGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKY 411 (477)
T ss_pred hhHHHHHHHHHh---------cCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCcccc
Confidence 999999999998 5999999999999999999999999999999999999999999999999999999864
Q ss_pred ------eeeecCCCc
Q 038855 236 ------RSYDPVKGM 244 (260)
Q Consensus 236 ------~~yd~~~g~ 244 (260)
..|-|+.|.
T Consensus 412 ~~~pD~etYlHRiGR 426 (477)
T KOG0332|consen 412 TGEPDYETYLHRIGR 426 (477)
T ss_pred CCCCCHHHHHHHhcc
Confidence 245566554
No 34
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=1.9e-21 Score=181.28 Aligned_cols=185 Identities=17% Similarity=0.250 Sum_probs=147.3
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCce
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLK 85 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 85 (260)
-.|++..++|+|||| ..+..||---+-+.+...++ ..|
T Consensus 223 a~ls~c~~lV~DEAD-KlLs~~F~~~~e~li~~lP~-----------------------------------------~rQ 260 (459)
T KOG0326|consen 223 ADLSDCVILVMDEAD-KLLSVDFQPIVEKLISFLPK-----------------------------------------ERQ 260 (459)
T ss_pred ccchhceEEEechhh-hhhchhhhhHHHHHHHhCCc-----------------------------------------cce
Confidence 468899999999997 45666665555555555565 789
Q ss_pred EEEEeccCC--HHH-HHhhhCCCcEEEecCce--eeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHH
Q 038855 86 LIIMSASLD--ARG-FSEYFGCAKAVHVQGRQ--FPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIE 160 (260)
Q Consensus 86 lil~SATl~--~~~-~~~~~~~~~~v~v~~~~--~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve 160 (260)
++++|||+. +.. +.+|+..+-.+.+.... .-|.++|....+...+. .+.+++ ....-.+.+||||+.+.+|
T Consensus 261 illySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qKvh-CLntLf---skLqINQsIIFCNS~~rVE 336 (459)
T KOG0326|consen 261 ILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQKVH-CLNTLF---SKLQINQSIIFCNSTNRVE 336 (459)
T ss_pred eeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeechhhhhh-hHHHHH---HHhcccceEEEeccchHhH
Confidence 999999984 333 44688777666665432 23678888766655432 333443 3334567999999999999
Q ss_pred HHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccce-eee
Q 038855 161 SVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKAR-SYD 239 (260)
Q Consensus 161 ~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~-~yd 239 (260)
.+++.+.++ ++++..+|+.|.|+.|.++|..|++|..+.|||||+.-|||||+.|.+|||++||+.. .|-
T Consensus 337 LLAkKITel---------GyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYL 407 (459)
T KOG0326|consen 337 LLAKKITEL---------GYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYL 407 (459)
T ss_pred HHHHHHHhc---------cchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHH
Confidence 999999996 9999999999999999999999999999999999999999999999999999999995 698
Q ss_pred cCCCce
Q 038855 240 PVKGME 245 (260)
Q Consensus 240 ~~~g~~ 245 (260)
|+.|.+
T Consensus 408 HRIGRs 413 (459)
T KOG0326|consen 408 HRIGRS 413 (459)
T ss_pred HHccCC
Confidence 888753
No 35
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=4.3e-21 Score=186.53 Aligned_cols=193 Identities=16% Similarity=0.158 Sum_probs=136.0
Q ss_pred CCCCcccEEEEecCCcCCcc-hhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCc
Q 038855 6 PYLSRYSVIIVDEAHERTVH-TDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPL 84 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~-~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (260)
-.|++++++|||||| |+++ ++|.-.+=+.+..... ......
T Consensus 222 i~l~~~k~~vLDEAD-rMlD~mgF~p~Ir~iv~~~~~-------------------------------------~~~~~~ 263 (482)
T KOG0335|consen 222 ISLDNCKFLVLDEAD-RMLDEMGFEPQIRKIVEQLGM-------------------------------------PPKNNR 263 (482)
T ss_pred eehhhCcEEEecchH-HhhhhccccccHHHHhcccCC-------------------------------------CCccce
Confidence 457889999999997 6777 6665554444332211 112378
Q ss_pred eEEEEeccCC--HHHHHhhh-CC-CcEEEec---CceeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCC-----CEEEE
Q 038855 85 KLIIMSASLD--ARGFSEYF-GC-AKAVHVQ---GRQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPG-----DILVF 152 (260)
Q Consensus 85 qlil~SATl~--~~~~~~~~-~~-~~~v~v~---~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g-----~iLVF 152 (260)
|.++||||.. ...+..+| .+ ...+.+. +..--+.+-.+.....+.....+..+.........+ .++||
T Consensus 264 qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvF 343 (482)
T KOG0335|consen 264 QTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVF 343 (482)
T ss_pred eEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEE
Confidence 9999999994 33455444 32 2222222 221223333444444443333333222222111233 79999
Q ss_pred eCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCC
Q 038855 153 LTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGF 232 (260)
Q Consensus 153 l~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~ 232 (260)
+.+++.+..++..|.. .++++.++||..+|.+|.+.+..|+.|+..|+|||+||+||+|||+|+||||+.+
T Consensus 344 vEt~~~~d~l~~~l~~---------~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDm 414 (482)
T KOG0335|consen 344 VETKRGADELAAFLSS---------NGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDM 414 (482)
T ss_pred eeccchhhHHHHHHhc---------CCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeec
Confidence 9999999999999988 5999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-eeeecCCCce
Q 038855 233 VKA-RSYDPVKGME 245 (260)
Q Consensus 233 ~~~-~~yd~~~g~~ 245 (260)
|.. .+|-|+.|-+
T Consensus 415 P~d~d~YvHRIGRT 428 (482)
T KOG0335|consen 415 PADIDDYVHRIGRT 428 (482)
T ss_pred CcchhhHHHhcccc
Confidence 999 6799988754
No 36
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.84 E-value=8e-21 Score=186.36 Aligned_cols=185 Identities=15% Similarity=0.251 Sum_probs=154.9
Q ss_pred CCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCceE
Q 038855 7 YLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLKL 86 (260)
Q Consensus 7 ~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql 86 (260)
..+++.++|||||| |.++|+|--.+-..+.+.++ .+|+
T Consensus 212 ~t~~lQmLvLDEAD-R~LDMGFk~tL~~Ii~~lP~-----------------------------------------~RQT 249 (758)
T KOG0343|consen 212 STSNLQMLVLDEAD-RMLDMGFKKTLNAIIENLPK-----------------------------------------KRQT 249 (758)
T ss_pred CCCcceEEEeccHH-HHHHHhHHHHHHHHHHhCCh-----------------------------------------hhee
Confidence 34689999999997 89999987777777777777 7899
Q ss_pred EEEeccC--CHHHHHhh-hCCCcEEEecCc---eee--eeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHH
Q 038855 87 IIMSASL--DARGFSEY-FGCAKAVHVQGR---QFP--VEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEE 158 (260)
Q Consensus 87 il~SATl--~~~~~~~~-~~~~~~v~v~~~---~~~--v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ 158 (260)
+|||||- ++..++.. +.++..|.+-.. .+| +.++|+..+..+ ++..|+.....+...++|||+.++.+
T Consensus 250 LLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~----Ki~~L~sFI~shlk~K~iVF~SscKq 325 (758)
T KOG0343|consen 250 LLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLED----KIDMLWSFIKSHLKKKSIVFLSSCKQ 325 (758)
T ss_pred eeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhh----HHHHHHHHHHhccccceEEEEehhhH
Confidence 9999997 55666664 566766655321 133 678888777655 66677888888888899999999999
Q ss_pred HHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc-ee
Q 038855 159 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA-RS 237 (260)
Q Consensus 159 ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~-~~ 237 (260)
+..+++...++- .++++..|||.|.|..|+.++..|-..+--||+|||+++||+|+|.|++||..+.|.. ..
T Consensus 326 vkf~~e~F~rlr-------pg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~t 398 (758)
T KOG0343|consen 326 VKFLYEAFCRLR-------PGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDT 398 (758)
T ss_pred HHHHHHHHHhcC-------CCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHH
Confidence 999999988752 5899999999999999999999999888899999999999999999999999999998 57
Q ss_pred eecCCCc
Q 038855 238 YDPVKGM 244 (260)
Q Consensus 238 yd~~~g~ 244 (260)
|.|+-|.
T Consensus 399 YIHRvGR 405 (758)
T KOG0343|consen 399 YIHRVGR 405 (758)
T ss_pred HHHHhhh
Confidence 9888775
No 37
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=3.1e-21 Score=187.91 Aligned_cols=187 Identities=16% Similarity=0.206 Sum_probs=136.6
Q ss_pred CCCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCc
Q 038855 5 DPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPL 84 (260)
Q Consensus 5 d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (260)
.+.|+++.++|||||| |+++..|--.+-..+...++ .+
T Consensus 322 sf~ldsiEVLvlDEAD-RMLeegFademnEii~lcpk-----------------------------------------~R 359 (691)
T KOG0338|consen 322 SFNLDSIEVLVLDEAD-RMLEEGFADEMNEIIRLCPK-----------------------------------------NR 359 (691)
T ss_pred CccccceeEEEechHH-HHHHHHHHHHHHHHHHhccc-----------------------------------------cc
Confidence 4678999999999997 78887776665555555555 78
Q ss_pred eEEEEeccCC--HHHHHhh-hCCCcEEEecCcee---eeeEEEeeCC-CcchH-HHHHHHHHHHHhhcCCCCEEEEeCCH
Q 038855 85 KLIIMSASLD--ARGFSEY-FGCAKAVHVQGRQF---PVEILYTLYP-EPDFL-DATLITIFQVHLDEAPGDILVFLTGQ 156 (260)
Q Consensus 85 qlil~SATl~--~~~~~~~-~~~~~~v~v~~~~~---~v~~~~~~~~-~~~~~-~~~~~~l~~i~~~~~~g~iLVFl~~~ 156 (260)
|.+||||||. +..+... +..+--+.+..... -+.+-|+.-. ..+.. .+.+.. ++...-...++||+.|+
T Consensus 360 QTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~---l~~rtf~~~~ivFv~tK 436 (691)
T KOG0338|consen 360 QTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLAS---LITRTFQDRTIVFVRTK 436 (691)
T ss_pred cceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHH---HHHHhcccceEEEEehH
Confidence 9999999993 4445543 44444455544321 1233343221 11111 122222 22222246799999999
Q ss_pred HHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc-
Q 038855 157 EEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA- 235 (260)
Q Consensus 157 ~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~- 235 (260)
+.+..+.=+|--+ ++.+.-+||+|+|+||..+++.|+.+...||||||+|+||+||++|..|||+.+|+.
T Consensus 437 k~AHRl~IllGLl---------gl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~ 507 (691)
T KOG0338|consen 437 KQAHRLRILLGLL---------GLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTI 507 (691)
T ss_pred HHHHHHHHHHHHh---------hchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhH
Confidence 9999876666553 899999999999999999999999999999999999999999999999999999998
Q ss_pred eeeecCCCce
Q 038855 236 RSYDPVKGME 245 (260)
Q Consensus 236 ~~yd~~~g~~ 245 (260)
..|-|+-|.+
T Consensus 508 e~Y~HRVGRT 517 (691)
T KOG0338|consen 508 EHYLHRVGRT 517 (691)
T ss_pred HHHHHHhhhh
Confidence 6798877754
No 38
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.83 E-value=1.4e-19 Score=175.88 Aligned_cols=148 Identities=14% Similarity=0.167 Sum_probs=106.0
Q ss_pred CceEEEEeccCCHHH---HHhhhCC-CcEEEecCceeeeeEEEeeCCCcchHHHHHHHHHHHHhhcC-CCCEEEEeCCHH
Q 038855 83 PLKLIIMSASLDARG---FSEYFGC-AKAVHVQGRQFPVEILYTLYPEPDFLDATLITIFQVHLDEA-PGDILVFLTGQE 157 (260)
Q Consensus 83 ~~qlil~SATl~~~~---~~~~~~~-~~~v~v~~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~-~g~iLVFl~~~~ 157 (260)
..++++||||+.... +.+.++- .+.+.......|.-.+.......+.+. .+........ ...+||||+++.
T Consensus 162 ~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~~~~~~~~----~l~~~l~~~~~~~~~IIF~~s~~ 237 (470)
T TIGR00614 162 NVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRRKTPKILE----DLLRFIRKEFKGKSGIIYCPSRK 237 (470)
T ss_pred CCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEeCCccHHH----HHHHHHHHhcCCCceEEEECcHH
Confidence 567999999996643 3344431 222222221122222222222223222 2333333233 345699999999
Q ss_pred HHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccce-
Q 038855 158 EIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKAR- 236 (260)
Q Consensus 158 ~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~- 236 (260)
+++.+++.|++ .++.+..+||+|++++|.++++.|+.|..+|||||+++++|||+|+|++||++++|+..
T Consensus 238 ~~e~la~~L~~---------~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~ 308 (470)
T TIGR00614 238 KSEQVTASLQN---------LGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSME 308 (470)
T ss_pred HHHHHHHHHHh---------cCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHH
Confidence 99999999987 48899999999999999999999999999999999999999999999999999999974
Q ss_pred eeecCCC
Q 038855 237 SYDPVKG 243 (260)
Q Consensus 237 ~yd~~~g 243 (260)
.|-++.|
T Consensus 309 ~y~Qr~G 315 (470)
T TIGR00614 309 SYYQESG 315 (470)
T ss_pred HHHhhhc
Confidence 5777665
No 39
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.82 E-value=4.9e-21 Score=187.71 Aligned_cols=94 Identities=22% Similarity=0.382 Sum_probs=88.0
Q ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCC
Q 038855 143 DEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIP 222 (260)
Q Consensus 143 ~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp 222 (260)
...||..|||||+...|..+.-+|..+ ++.-.+||++|.|.+|.+.++.|+.....||||||+|+||+|||
T Consensus 460 ~ryPGrTlVF~NsId~vKRLt~~L~~L---------~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp 530 (731)
T KOG0347|consen 460 TRYPGRTLVFCNSIDCVKRLTVLLNNL---------DIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIP 530 (731)
T ss_pred eecCCceEEEechHHHHHHHHHHHhhc---------CCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCC
Confidence 456999999999999999999998885 88999999999999999999999999999999999999999999
Q ss_pred CceEEEeCCCccc-eeeecCCCce
Q 038855 223 GIKYVIDPGFVKA-RSYDPVKGME 245 (260)
Q Consensus 223 ~V~~VId~g~~~~-~~yd~~~g~~ 245 (260)
+|.|||++-.|+. .-|-|+.|.+
T Consensus 531 ~V~HVIHYqVPrtseiYVHRSGRT 554 (731)
T KOG0347|consen 531 GVQHVIHYQVPRTSEIYVHRSGRT 554 (731)
T ss_pred CcceEEEeecCCccceeEeccccc
Confidence 9999999999998 4699999865
No 40
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.81 E-value=2.1e-19 Score=180.22 Aligned_cols=147 Identities=15% Similarity=0.259 Sum_probs=108.1
Q ss_pred CceEEEEeccCCHHH---HHhhhC-CCcEEEecCceeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHH
Q 038855 83 PLKLIIMSASLDARG---FSEYFG-CAKAVHVQGRQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEE 158 (260)
Q Consensus 83 ~~qlil~SATl~~~~---~~~~~~-~~~~v~v~~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ 158 (260)
..++++||||++... +.+.++ ..+.+.+.....| ...|........ ...+........++++||||+++.+
T Consensus 174 ~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~-nl~~~v~~~~~~----~~~l~~~l~~~~~~~~IIFc~tr~~ 248 (607)
T PRK11057 174 TLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRP-NIRYTLVEKFKP----LDQLMRYVQEQRGKSGIIYCNSRAK 248 (607)
T ss_pred CCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCC-cceeeeeeccch----HHHHHHHHHhcCCCCEEEEECcHHH
Confidence 567999999996543 333332 2334444332222 122222222221 2233344444557789999999999
Q ss_pred HHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc-ee
Q 038855 159 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA-RS 237 (260)
Q Consensus 159 ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~-~~ 237 (260)
++.+++.|++ .++.+.++||+|++++|.++++.|+.|..+|||||+++++|||+|+|++||++++|+. ..
T Consensus 249 ~e~la~~L~~---------~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~ 319 (607)
T PRK11057 249 VEDTAARLQS---------RGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIES 319 (607)
T ss_pred HHHHHHHHHh---------CCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHH
Confidence 9999999988 4889999999999999999999999999999999999999999999999999999987 45
Q ss_pred eecCCC
Q 038855 238 YDPVKG 243 (260)
Q Consensus 238 yd~~~g 243 (260)
|-.+.|
T Consensus 320 y~Qr~G 325 (607)
T PRK11057 320 YYQETG 325 (607)
T ss_pred HHHHhh
Confidence 666554
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.81 E-value=3.1e-19 Score=185.67 Aligned_cols=157 Identities=18% Similarity=0.171 Sum_probs=109.8
Q ss_pred CceEEEEeccC-CHHHHHhhhCCC-------cEEEecCc---eeeeeEEEe-----eCCCcchHHHHHHHHHHHHhhcCC
Q 038855 83 PLKLIIMSASL-DARGFSEYFGCA-------KAVHVQGR---QFPVEILYT-----LYPEPDFLDATLITIFQVHLDEAP 146 (260)
Q Consensus 83 ~~qlil~SATl-~~~~~~~~~~~~-------~~v~v~~~---~~~v~~~~~-----~~~~~~~~~~~~~~l~~i~~~~~~ 146 (260)
+.|.|++|||+ +.+.+++|+++. ++..+... .+++..... ..............+..+.. ..
T Consensus 207 ~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~--~~ 284 (876)
T PRK13767 207 EFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVDDLIHTPAEEISEALYETLHELIK--EH 284 (876)
T ss_pred CCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEeccCccccccccchhHHHHHHHHHHHHh--cC
Confidence 67899999999 567788877542 12222221 111111110 00111111223333333332 35
Q ss_pred CCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceE
Q 038855 147 GDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKY 226 (260)
Q Consensus 147 g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~ 226 (260)
+++||||||+..++.++..|.+.+... ..+..+..+||++++++|..+++.|++|..+|||||+++|+|||||+|++
T Consensus 285 ~~~LVF~nTr~~ae~la~~L~~~~~~~---~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~ 361 (876)
T PRK13767 285 RTTLIFTNTRSGAERVLYNLRKRFPEE---YDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDL 361 (876)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHhchhh---ccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcE
Confidence 789999999999999999998754310 12467999999999999999999999999999999999999999999999
Q ss_pred EEeCCCccc-eeeecCCCc
Q 038855 227 VIDPGFVKA-RSYDPVKGM 244 (260)
Q Consensus 227 VId~g~~~~-~~yd~~~g~ 244 (260)
||+.|.|+. ..|-++.|-
T Consensus 362 VI~~~~P~sv~~ylQRiGR 380 (876)
T PRK13767 362 VVLLGSPKSVSRLLQRIGR 380 (876)
T ss_pred EEEeCCCCCHHHHHHhccc
Confidence 999999986 456665553
No 42
>PRK01172 ski2-like helicase; Provisional
Probab=99.81 E-value=2.9e-19 Score=180.45 Aligned_cols=199 Identities=16% Similarity=0.201 Sum_probs=130.1
Q ss_pred CCCcccEEEEecCCcCCc-c-hhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCc
Q 038855 7 YLSRYSVIIVDEAHERTV-H-TDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPL 84 (260)
Q Consensus 7 ~L~~~~~vIlDEaher~~-~-~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (260)
.+.++++||+||+|...- . ...+..++.++...++ ..
T Consensus 132 ~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~-----------------------------------------~~ 170 (674)
T PRK01172 132 IINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNP-----------------------------------------DA 170 (674)
T ss_pred HHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCc-----------------------------------------CC
Confidence 378999999999996421 1 1123334444433333 67
Q ss_pred eEEEEeccC-CHHHHHhhhCCCcEEEecCceeeeeEEEeeC-------CCcchHHHHHHHHHHHHhhcCCCCEEEEeCCH
Q 038855 85 KLIIMSASL-DARGFSEYFGCAKAVHVQGRQFPVEILYTLY-------PEPDFLDATLITIFQVHLDEAPGDILVFLTGQ 156 (260)
Q Consensus 85 qlil~SATl-~~~~~~~~~~~~~~v~v~~~~~~v~~~~~~~-------~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~ 156 (260)
|+|+||||+ +.+.+++|++.. .+....+..|++...... ...... .....+... ...++++|||+|++
T Consensus 171 riI~lSATl~n~~~la~wl~~~-~~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~-~~~~~i~~~--~~~~~~vLVF~~sr 246 (674)
T PRK01172 171 RILALSATVSNANELAQWLNAS-LIKSNFRPVPLKLGILYRKRLILDGYERSQV-DINSLIKET--VNDGGQVLVFVSSR 246 (674)
T ss_pred cEEEEeCccCCHHHHHHHhCCC-ccCCCCCCCCeEEEEEecCeeeecccccccc-cHHHHHHHH--HhCCCcEEEEeccH
Confidence 899999999 788899998754 334444445554322111 111100 011111111 13468999999999
Q ss_pred HHHHHHHHHHHHHHhcCccC------C----------CCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCC
Q 038855 157 EEIESVERLVQERLLQLPEA------S----------RKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVT 220 (260)
Q Consensus 157 ~~ve~v~~~L~~~l~~~~~~------~----------~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gid 220 (260)
.+++.+++.|.+.+...... . -...+..+||+|++++|..+++.|++|..+|||||+++++|+|
T Consensus 247 ~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvn 326 (674)
T PRK01172 247 KNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVN 326 (674)
T ss_pred HHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCC
Confidence 99999999998765421110 0 0124788999999999999999999999999999999999999
Q ss_pred CCCceEEEeCCCccceeeecCCCceeeeEEeeehhhhhcC
Q 038855 221 IPGIKYVIDPGFVKARSYDPVKGMESLIVVPISKAQALQR 260 (260)
Q Consensus 221 Ip~V~~VId~g~~~~~~yd~~~g~~~l~~~~isk~~~~qR 260 (260)
+|+..+||+ +. ..|+. ....++|+.+..||
T Consensus 327 ipa~~VII~-~~---~~~~~------~~~~~~s~~~~~Qm 356 (674)
T PRK01172 327 LPARLVIVR-DI---TRYGN------GGIRYLSNMEIKQM 356 (674)
T ss_pred CcceEEEEc-Cc---eEeCC------CCceeCCHHHHHHH
Confidence 999876665 32 22322 12245777777765
No 43
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.81 E-value=2e-20 Score=190.55 Aligned_cols=211 Identities=34% Similarity=0.475 Sum_probs=172.9
Q ss_pred CCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCceE
Q 038855 7 YLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLKL 86 (260)
Q Consensus 7 ~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql 86 (260)
-|..++++|+||+|||.+++|+++-+++....... .+++
T Consensus 490 glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~-----------------------------------------dl~v 528 (1282)
T KOG0921|consen 490 GLRGISHVIIDEIHERDVDTDFVLIVLREMISTYR-----------------------------------------DLRV 528 (1282)
T ss_pred cccccccccchhhhhhccchHHHHHHHHhhhccch-----------------------------------------hhhh
Confidence 35678999999999999999999999998876655 7899
Q ss_pred EEEeccCCHHHHHhhhCCCcEEEecCceeeeeEEEeeCC----------------------CcchH--------------
Q 038855 87 IIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYP----------------------EPDFL-------------- 130 (260)
Q Consensus 87 il~SATl~~~~~~~~~~~~~~v~v~~~~~~v~~~~~~~~----------------------~~~~~-------------- 130 (260)
++||||+|.+.|..||+.++.+.+.++.||+..+|+... .+...
T Consensus 529 ~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~ 608 (1282)
T KOG0921|consen 529 VLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPS 608 (1282)
T ss_pred hhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChh
Confidence 999999999999999999998888888888765544330 00000
Q ss_pred ------------------HHHHHHHHHHHh-hcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCH
Q 038855 131 ------------------DATLITIFQVHL-DEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPS 191 (260)
Q Consensus 131 ------------------~~~~~~l~~i~~-~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~ 191 (260)
....+.++.-.. ..-+|-|+||+|+.+.+-.+...|...-.. .....+.++++|+-++.
T Consensus 609 ~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~f--g~~~~y~ilp~Hsq~~~ 686 (1282)
T KOG0921|consen 609 YNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEF--GQANKYEILPLHSQLTS 686 (1282)
T ss_pred hcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhh--ccchhcccccchhhccc
Confidence 011222221112 223788999999999999998888664221 12258899999999999
Q ss_pred HHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccceeeecCCCceeeeEEeeehhhhhcC
Q 038855 192 EQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYDPVKGMESLIVVPISKAQALQR 260 (260)
Q Consensus 192 ~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~~yd~~~g~~~l~~~~isk~~~~qR 260 (260)
.++.+++++-+.|.+++|++|++|++++||.++.+|||.+..+.+.|-..+-|....+.|.||-+-.||
T Consensus 687 ~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr 755 (1282)
T KOG0921|consen 687 QEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQR 755 (1282)
T ss_pred HhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999998887
No 44
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.80 E-value=8.6e-19 Score=189.10 Aligned_cols=159 Identities=16% Similarity=0.127 Sum_probs=108.9
Q ss_pred CceEEEEeccC-CHHHHHhhhCCC-cEEEecC---ceeeeeEEEeeCCCc--------------------chHHHHHHHH
Q 038855 83 PLKLIIMSASL-DARGFSEYFGCA-KAVHVQG---RQFPVEILYTLYPEP--------------------DFLDATLITI 137 (260)
Q Consensus 83 ~~qlil~SATl-~~~~~~~~~~~~-~~v~v~~---~~~~v~~~~~~~~~~--------------------~~~~~~~~~l 137 (260)
+.|+|++|||+ +.+.+++|+++. ++..+.. +..+++.. ...... ..+......+
T Consensus 159 ~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~-vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 159 SAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIV-VPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred CCeEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEE-EecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 68999999999 778899999754 3222211 11223322 111110 0000111112
Q ss_pred HHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCc------------------------cCCCCeEEEEecCCCCHHH
Q 038855 138 FQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLP------------------------EASRKLVTVPIFSSLPSEQ 193 (260)
Q Consensus 138 ~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~------------------------~~~~~~~~~~lh~~l~~~~ 193 (260)
+... ....++|||+||+..+|.++..|.+...... .....+.+..+||+|++++
T Consensus 238 l~~i--~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkee 315 (1490)
T PRK09751 238 LDEV--LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQ 315 (1490)
T ss_pred HHHH--hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHH
Confidence 2211 2357899999999999999999987542100 0001234678999999999
Q ss_pred HHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc-eeeecCCCc
Q 038855 194 QMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA-RSYDPVKGM 244 (260)
Q Consensus 194 r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~-~~yd~~~g~ 244 (260)
|..+.+.|++|..++||||+.+|+|||||+|++||++|.|.. .+|-++.|.
T Consensus 316 R~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGR 367 (1490)
T PRK09751 316 RAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGR 367 (1490)
T ss_pred HHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCC
Confidence 999999999999999999999999999999999999999987 467665554
No 45
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.80 E-value=2.8e-19 Score=174.32 Aligned_cols=183 Identities=19% Similarity=0.273 Sum_probs=141.3
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCce
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLK 85 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 85 (260)
-.|++++++|||||+ |+++++|+-.+=...+..|+ ++|
T Consensus 366 tn~~rvS~LV~DEad-rmfdmGfe~qVrSI~~hirp-----------------------------------------drQ 403 (731)
T KOG0339|consen 366 TNLSRVSYLVLDEAD-RMFDMGFEPQVRSIKQHIRP-----------------------------------------DRQ 403 (731)
T ss_pred ccceeeeEEEEechh-hhhccccHHHHHHHHhhcCC-----------------------------------------cce
Confidence 468999999999997 89999998888777777888 899
Q ss_pred EEEEeccCC--HHHHH-hhhCCCcEEEecC----ceeeeeEEEeeCCCcchHHHHHHHHH-HHHhhcCCCCEEEEeCCHH
Q 038855 86 LIIMSASLD--ARGFS-EYFGCAKAVHVQG----RQFPVEILYTLYPEPDFLDATLITIF-QVHLDEAPGDILVFLTGQE 157 (260)
Q Consensus 86 lil~SATl~--~~~~~-~~~~~~~~v~v~~----~~~~v~~~~~~~~~~~~~~~~~~~l~-~i~~~~~~g~iLVFl~~~~ 157 (260)
.++||||+. ++.+. .+++++.- .+++ ...-+.+.-..++... .++.++. ++.....-|++|+|++.++
T Consensus 404 tllFsaTf~~kIe~lard~L~dpVr-vVqg~vgean~dITQ~V~V~~s~~---~Kl~wl~~~L~~f~S~gkvlifVTKk~ 479 (731)
T KOG0339|consen 404 TLLFSATFKKKIEKLARDILSDPVR-VVQGEVGEANEDITQTVSVCPSEE---KKLNWLLRHLVEFSSEGKVLIFVTKKA 479 (731)
T ss_pred EEEeeccchHHHHHHHHHHhcCCee-EEEeehhccccchhheeeeccCcH---HHHHHHHHHhhhhccCCcEEEEEeccC
Confidence 999999994 44555 47766532 2222 1122322222222222 3455443 3444455799999999999
Q ss_pred HHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccce-
Q 038855 158 EIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKAR- 236 (260)
Q Consensus 158 ~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~- 236 (260)
.++.++..|.- .++.+..+||++.|.+|++++..|+.+...|++|||+|+||+|||+++.|||+.+-+..
T Consensus 480 ~~e~i~a~Lkl---------k~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardId 550 (731)
T KOG0339|consen 480 DAEEIAANLKL---------KGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDID 550 (731)
T ss_pred CHHHHHHHhcc---------ccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhH
Confidence 99999999876 59999999999999999999999999999999999999999999999999999987763
Q ss_pred eeecCCC
Q 038855 237 SYDPVKG 243 (260)
Q Consensus 237 ~yd~~~g 243 (260)
.|-++.|
T Consensus 551 ththrig 557 (731)
T KOG0339|consen 551 THTHRIG 557 (731)
T ss_pred HHHHHhh
Confidence 4555544
No 46
>PRK02362 ski2-like helicase; Provisional
Probab=99.79 E-value=2.1e-18 Score=176.15 Aligned_cols=165 Identities=20% Similarity=0.252 Sum_probs=111.8
Q ss_pred CceEEEEeccC-CHHHHHhhhCCCcEEEecCceeeeeEE--------Eee----CCCcchHHHHHHHHHHHHhhcCCCCE
Q 038855 83 PLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFPVEIL--------YTL----YPEPDFLDATLITIFQVHLDEAPGDI 149 (260)
Q Consensus 83 ~~qlil~SATl-~~~~~~~~~~~~~~v~v~~~~~~v~~~--------~~~----~~~~~~~~~~~~~l~~i~~~~~~g~i 149 (260)
..|+++||||+ +.+.+++|++... +....+..|+... +.. ...... ......+..... ..+++
T Consensus 171 ~~qii~lSATl~n~~~la~wl~~~~-~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~ 246 (737)
T PRK02362 171 DLQVVALSATIGNADELADWLDAEL-VDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSK-DDTLNLVLDTLE--EGGQC 246 (737)
T ss_pred CCcEEEEcccCCCHHHHHHHhCCCc-ccCCCCCCCCeeeEecCCeeccccccccCCCccc-hHHHHHHHHHHH--cCCCe
Confidence 67999999999 7888999987432 2111111222111 000 000000 223333333332 46899
Q ss_pred EEEeCCHHHHHHHHHHHHHHHhcCc-------------------cC-C-------CCeEEEEecCCCCHHHHHHHhcccC
Q 038855 150 LVFLTGQEEIESVERLVQERLLQLP-------------------EA-S-------RKLVTVPIFSSLPSEQQMKVFAPAA 202 (260)
Q Consensus 150 LVFl~~~~~ve~v~~~L~~~l~~~~-------------------~~-~-------~~~~~~~lh~~l~~~~r~~v~~~~~ 202 (260)
|||||++.+++.+++.|...+.... .. . -...+..+||+|++++|..+++.|+
T Consensus 247 LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr 326 (737)
T PRK02362 247 LVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFR 326 (737)
T ss_pred EEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHH
Confidence 9999999999999999876543100 00 0 0136889999999999999999999
Q ss_pred CCCeEEEEecCcccccCCCCCceEEEeCCCccceeeecCCCceeeeEEeeehhhhhcC
Q 038855 203 AGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYDPVKGMESLIVVPISKAQALQR 260 (260)
Q Consensus 203 ~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~~yd~~~g~~~l~~~~isk~~~~qR 260 (260)
+|..+||+||+++++|+++|.+++||+. ...||+..|+ .|+|..+..||
T Consensus 327 ~G~i~VLvaT~tla~GvnlPa~~VVI~~----~~~yd~~~g~-----~~~s~~~y~Qm 375 (737)
T PRK02362 327 DRLIKVISSTPTLAAGLNLPARRVIIRD----YRRYDGGAGM-----QPIPVLEYHQM 375 (737)
T ss_pred cCCCeEEEechhhhhhcCCCceEEEEec----ceeecCCCCc-----eeCCHHHHHHH
Confidence 9999999999999999999999999975 2457765554 45666666664
No 47
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.79 E-value=2.8e-19 Score=175.00 Aligned_cols=210 Identities=20% Similarity=0.263 Sum_probs=152.7
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCC-CCCCc
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGR-KFPPL 84 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 84 (260)
..++++.+||+|||| |.+++++-.++-..+....+. .| ..|+.- =++.+
T Consensus 283 i~~s~LRwlVlDEaD-rlleLGfekdit~Il~~v~~~-------~~----------------------~e~~~~~lp~q~ 332 (708)
T KOG0348|consen 283 IKFSRLRWLVLDEAD-RLLELGFEKDITQILKAVHSI-------QN----------------------AECKDPKLPHQL 332 (708)
T ss_pred heeeeeeEEEecchh-HHHhccchhhHHHHHHHHhhc-------cc----------------------hhcccccccHHH
Confidence 457899999999997 777777755543333332210 00 012221 12257
Q ss_pred eEEEEeccC--CHHHHHhh-hCCCcEEEec-----------------Cc----e---e----eeeEEEeeCCCcchHHHH
Q 038855 85 KLIIMSASL--DARGFSEY-FGCAKAVHVQ-----------------GR----Q---F----PVEILYTLYPEPDFLDAT 133 (260)
Q Consensus 85 qlil~SATl--~~~~~~~~-~~~~~~v~v~-----------------~~----~---~----~v~~~~~~~~~~~~~~~~ 133 (260)
|-+++|||| .+..++.. +.++..+.+. .. . + .+.+.|+..|+.-.+.+.
T Consensus 333 q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~L 412 (708)
T KOG0348|consen 333 QNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVAL 412 (708)
T ss_pred HhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHH
Confidence 889999999 34455542 2333222210 00 0 1 145677777887778888
Q ss_pred HHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhc-------------CccCCCCeEEEEecCCCCHHHHHHHhcc
Q 038855 134 LITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQ-------------LPEASRKLVTVPIFSSLPSEQQMKVFAP 200 (260)
Q Consensus 134 ~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~-------------~~~~~~~~~~~~lh~~l~~~~r~~v~~~ 200 (260)
...|.+.+..+..-+++||+.+.+.|+.-+.++.+.+.. .++...+..+..|||+|.|++|..+|+.
T Consensus 413 aa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~ 492 (708)
T KOG0348|consen 413 AALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQE 492 (708)
T ss_pred HHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHh
Confidence 888888888887779999999999999999999877653 2223346789999999999999999999
Q ss_pred cCCCCeEEEEecCcccccCCCCCceEEEeCCCccc-eeeecCCCce
Q 038855 201 AAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA-RSYDPVKGME 245 (260)
Q Consensus 201 ~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~-~~yd~~~g~~ 245 (260)
|....+-||+|||+|+||+|+|+|++||.+.-|.. .+|-|+.|.+
T Consensus 493 Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRT 538 (708)
T KOG0348|consen 493 FSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRT 538 (708)
T ss_pred hccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhh
Confidence 99999999999999999999999999999999988 5798887754
No 48
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.78 E-value=2.2e-18 Score=171.67 Aligned_cols=146 Identities=13% Similarity=0.184 Sum_probs=106.0
Q ss_pred ceEEEEeccCCHHH---HHhhhCCC-cEEEecCceeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHH
Q 038855 84 LKLIIMSASLDARG---FSEYFGCA-KAVHVQGRQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEI 159 (260)
Q Consensus 84 ~qlil~SATl~~~~---~~~~~~~~-~~v~v~~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~v 159 (260)
..++++|||..... +.++++-. +.+..... ......|......+. ...+.........++.||||+++..+
T Consensus 163 ~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~-~r~nl~~~v~~~~~~----~~~l~~~l~~~~~~~~IIf~~sr~~~ 237 (591)
T TIGR01389 163 VPRIALTATADAETRQDIRELLRLADANEFITSF-DRPNLRFSVVKKNNK----QKFLLDYLKKHRGQSGIIYASSRKKV 237 (591)
T ss_pred CCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCC-CCCCcEEEEEeCCCH----HHHHHHHHHhcCCCCEEEEECcHHHH
Confidence 34999999996543 44555422 22222221 112233332222222 22333444444467899999999999
Q ss_pred HHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc-eee
Q 038855 160 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA-RSY 238 (260)
Q Consensus 160 e~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~-~~y 238 (260)
+.+++.|.. .++.+.++||+|++++|..+++.|..|..+|||||+.+++|||+|+|++||++++|+. ..|
T Consensus 238 e~la~~L~~---------~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y 308 (591)
T TIGR01389 238 EELAERLES---------QGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESY 308 (591)
T ss_pred HHHHHHHHh---------CCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHH
Confidence 999999987 4889999999999999999999999999999999999999999999999999999987 456
Q ss_pred ecCCC
Q 038855 239 DPVKG 243 (260)
Q Consensus 239 d~~~g 243 (260)
-...|
T Consensus 309 ~Q~~G 313 (591)
T TIGR01389 309 YQEAG 313 (591)
T ss_pred hhhhc
Confidence 55444
No 49
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.78 E-value=3.2e-18 Score=176.53 Aligned_cols=146 Identities=15% Similarity=0.184 Sum_probs=99.2
Q ss_pred CceEEEEeccCCH--HHHHh-hhCCCcEEEecCceee---eeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCH
Q 038855 83 PLKLIIMSASLDA--RGFSE-YFGCAKAVHVQGRQFP---VEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQ 156 (260)
Q Consensus 83 ~~qlil~SATl~~--~~~~~-~~~~~~~v~v~~~~~~---v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~ 156 (260)
++|+++||||++. ..+.+ +..+...+.+...... +.+ |.......++...+..+..+. .+.++++||||||+
T Consensus 205 prQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q-~v~v~~e~Kl~~lv~~L~~ll-~e~g~~vLVF~NTv 282 (844)
T TIGR02621 205 PLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVK-LVPPSDEKFLSTMVKELNLLM-KDSGGAILVFCRTV 282 (844)
T ss_pred cceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEE-EEecChHHHHHHHHHHHHHHH-hhCCCcEEEEECCH
Confidence 4799999999953 33433 4333333333332222 222 333222223333333333333 34578999999999
Q ss_pred HHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHH-----HHhcccCC----CC-------eEEEEecCcccccCC
Q 038855 157 EEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQM-----KVFAPAAA----GF-------RKVILATNIAETSVT 220 (260)
Q Consensus 157 ~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~-----~v~~~~~~----g~-------~kVlvaTdiae~gid 220 (260)
+.++.+++.|.+. ++ ..+||.|++.+|. ++++.|++ |. .+|||||+++|+|||
T Consensus 283 ~~Aq~L~~~L~~~---------g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLD 351 (844)
T TIGR02621 283 KHVRKVFAKLPKE---------KF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVN 351 (844)
T ss_pred HHHHHHHHHHHhc---------CC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhccc
Confidence 9999999999873 44 8999999999999 77888876 43 689999999999999
Q ss_pred CCCceEEEeCCCccceeeecCCC
Q 038855 221 IPGIKYVIDPGFVKARSYDPVKG 243 (260)
Q Consensus 221 Ip~V~~VId~g~~~~~~yd~~~g 243 (260)
|+. ++||+.-.| ...|-++.|
T Consensus 352 Id~-d~VI~d~aP-~esyIQRiG 372 (844)
T TIGR02621 352 ISA-DHLVCDLAP-FESMQQRFG 372 (844)
T ss_pred CCc-ceEEECCCC-HHHHHHHhc
Confidence 987 788875554 356777665
No 50
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.77 E-value=2.1e-18 Score=183.45 Aligned_cols=145 Identities=14% Similarity=0.181 Sum_probs=107.5
Q ss_pred CceEEEEeccCCHHHHH---hhhCCCcEEEecCc-eeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHH
Q 038855 83 PLKLIIMSASLDARGFS---EYFGCAKAVHVQGR-QFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEE 158 (260)
Q Consensus 83 ~~qlil~SATl~~~~~~---~~~~~~~~v~v~~~-~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ 158 (260)
..++++||||+.++.+. .++.++..+..+.. ..++++++..+.... ....+..-. ...|+++||+|+.+.
T Consensus 748 ~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~~----~k~~il~el--~r~gqv~vf~n~i~~ 821 (1147)
T PRK10689 748 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLV----VREAILREI--LRGGQVYYLYNDVEN 821 (1147)
T ss_pred CCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEecCcHH----HHHHHHHHH--hcCCeEEEEECCHHH
Confidence 67899999998665543 24445555554332 356666655432211 111222111 136899999999999
Q ss_pred HHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEE-----eCCCc
Q 038855 159 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVI-----DPGFV 233 (260)
Q Consensus 159 ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VI-----d~g~~ 233 (260)
++.+++.|.+.+ .++.+..+||+|++++|.+++..|++|+.+|||||+++|||||||+|++|| ++|++
T Consensus 822 ie~la~~L~~~~-------p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fgla 894 (1147)
T PRK10689 822 IQKAAERLAELV-------PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLA 894 (1147)
T ss_pred HHHHHHHHHHhC-------CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHH
Confidence 999999998864 356889999999999999999999999999999999999999999999999 77876
Q ss_pred cceeeecCCC
Q 038855 234 KARSYDPVKG 243 (260)
Q Consensus 234 ~~~~yd~~~g 243 (260)
. |.++.|
T Consensus 895 q---~~Qr~G 901 (1147)
T PRK10689 895 Q---LHQLRG 901 (1147)
T ss_pred H---HHHHhh
Confidence 4 555444
No 51
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.77 E-value=3.4e-18 Score=179.87 Aligned_cols=148 Identities=18% Similarity=0.208 Sum_probs=108.2
Q ss_pred CceEEEEeccCCHH---HHHhhhCCCcE-EEecCceeeeeEEEeeCCCcchHHHHHHHHHHHHhhc-CCCCEEEEeCCHH
Q 038855 83 PLKLIIMSASLDAR---GFSEYFGCAKA-VHVQGRQFPVEILYTLYPEPDFLDATLITIFQVHLDE-APGDILVFLTGQE 157 (260)
Q Consensus 83 ~~qlil~SATl~~~---~~~~~~~~~~~-v~v~~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~-~~g~iLVFl~~~~ 157 (260)
..+++++|||+... .+.+.++-... +...+..-| ..+|...+.... ....+..+.... ..+..||||+++.
T Consensus 616 ~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~Rp-NL~y~Vv~k~kk---~le~L~~~I~~~~~~esgIIYC~SRk 691 (1195)
T PLN03137 616 NIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRP-NLWYSVVPKTKK---CLEDIDKFIKENHFDECGIIYCLSRM 691 (1195)
T ss_pred CCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCcc-ceEEEEeccchh---HHHHHHHHHHhcccCCCceeEeCchh
Confidence 56789999999654 34455543322 222221112 233433232221 222333333322 2567899999999
Q ss_pred HHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc-e
Q 038855 158 EIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA-R 236 (260)
Q Consensus 158 ~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~-~ 236 (260)
+++.+++.|+. .++.+.++||+|++++|..+++.|..|..+|||||+.+++|||+|+|++||++++|+. .
T Consensus 692 e~E~LAe~L~~---------~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiE 762 (1195)
T PLN03137 692 DCEKVAERLQE---------FGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIE 762 (1195)
T ss_pred HHHHHHHHHHH---------CCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHH
Confidence 99999999987 4899999999999999999999999999999999999999999999999999999998 4
Q ss_pred eeecCCC
Q 038855 237 SYDPVKG 243 (260)
Q Consensus 237 ~yd~~~g 243 (260)
.|-.+.|
T Consensus 763 sYyQriG 769 (1195)
T PLN03137 763 GYHQECG 769 (1195)
T ss_pred HHHhhhc
Confidence 5776655
No 52
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.77 E-value=4.9e-18 Score=157.79 Aligned_cols=90 Identities=17% Similarity=0.178 Sum_probs=75.2
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHH----HhcccCCCCeEEEEecCcccccCC
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMK----VFAPAAAGFRKVILATNIAETSVT 220 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~----v~~~~~~g~~kVlvaTdiae~gid 220 (260)
.++++||||+|++.++.+++.|.+.. ....+..+||++++.+|.+ +++.|++|..+|||||+++|+|+|
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~-------~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiD 293 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENA-------PEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLD 293 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhc-------CCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceec
Confidence 46899999999999999999998852 1346999999999999976 488999999999999999999999
Q ss_pred CCCceEEEeCCCccceeeecCCC
Q 038855 221 IPGIKYVIDPGFVKARSYDPVKG 243 (260)
Q Consensus 221 Ip~V~~VId~g~~~~~~yd~~~g 243 (260)
|| +++||+...|. .+|-++.|
T Consensus 294 i~-~~~vi~~~~~~-~~~iqr~G 314 (358)
T TIGR01587 294 IS-ADVMITELAPI-DSLIQRLG 314 (358)
T ss_pred cC-CCEEEEcCCCH-HHHHHHhc
Confidence 95 78888876663 35555544
No 53
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.77 E-value=2e-19 Score=171.14 Aligned_cols=190 Identities=17% Similarity=0.287 Sum_probs=134.9
Q ss_pred CCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCceEE
Q 038855 8 LSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLKLI 87 (260)
Q Consensus 8 L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qli 87 (260)
|.-+.++.+|||| |+++++|--++-........ .+|++
T Consensus 324 Ld~CRyL~lDEAD-RmiDmGFEddir~iF~~FK~-----------------------------------------QRQTL 361 (610)
T KOG0341|consen 324 LDACRYLTLDEAD-RMIDMGFEDDIRTIFSFFKG-----------------------------------------QRQTL 361 (610)
T ss_pred HHHHHHhhhhhHH-HHhhccchhhHHHHHHHHhh-----------------------------------------hhhee
Confidence 4567889999997 88888876554332222222 67899
Q ss_pred EEeccCCHHHHHhhhCC----CcEEEecCce---eeeeEEEeeCCCcchHH--HHHHHHHHHHhhcCCCCEEEEeCCHHH
Q 038855 88 IMSASLDARGFSEYFGC----AKAVHVQGRQ---FPVEILYTLYPEPDFLD--ATLITIFQVHLDEAPGDILVFLTGQEE 158 (260)
Q Consensus 88 l~SATl~~~~~~~~~~~----~~~v~v~~~~---~~v~~~~~~~~~~~~~~--~~~~~l~~i~~~~~~g~iLVFl~~~~~ 158 (260)
+|||||. ..+..|... +..+.+.... ..|- .+..|+. +++-.++ -|.+....++|||+-.+++
T Consensus 362 LFSATMP-~KIQ~FAkSALVKPvtvNVGRAGAAsldVi------QevEyVkqEaKiVylL-eCLQKT~PpVLIFaEkK~D 433 (610)
T KOG0341|consen 362 LFSATMP-KKIQNFAKSALVKPVTVNVGRAGAASLDVI------QEVEYVKQEAKIVYLL-ECLQKTSPPVLIFAEKKAD 433 (610)
T ss_pred eeecccc-HHHHHHHHhhcccceEEecccccccchhHH------HHHHHHHhhhhhhhHH-HHhccCCCceEEEeccccC
Confidence 9999994 333333322 2223332110 0000 0011221 1222222 2455567899999999999
Q ss_pred HHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccce-e
Q 038855 159 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKAR-S 237 (260)
Q Consensus 159 ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~-~ 237 (260)
++.+.++|-- .++.++.+||+.+|++|...+.+|+.|+..||||||+|+.|+|+|+|.||||+++|... -
T Consensus 434 VD~IhEYLLl---------KGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIEN 504 (610)
T KOG0341|consen 434 VDDIHEYLLL---------KGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIEN 504 (610)
T ss_pred hHHHHHHHHH---------ccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHH
Confidence 9999999866 49999999999999999999999999999999999999999999999999999999984 5
Q ss_pred eecCCCce------eeeEEeeehhh
Q 038855 238 YDPVKGME------SLIVVPISKAQ 256 (260)
Q Consensus 238 yd~~~g~~------~l~~~~isk~~ 256 (260)
|-|+.|.+ -+.+..|.|.+
T Consensus 505 YVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 505 YVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred HHHHhcccCCCCCcceeeeeecccc
Confidence 88866642 36677777754
No 54
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.75 E-value=1.5e-17 Score=173.83 Aligned_cols=139 Identities=17% Similarity=0.184 Sum_probs=104.4
Q ss_pred CceEEEEeccCCHHHHHhh-hC--CCcEEEec-CceeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHH
Q 038855 83 PLKLIIMSASLDARGFSEY-FG--CAKAVHVQ-GRQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEE 158 (260)
Q Consensus 83 ~~qlil~SATl~~~~~~~~-~~--~~~~v~v~-~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ 158 (260)
..++++||||+.++.+... ++ +...+..+ ....|+++++..... . .....+.... ...++++||+|+.++
T Consensus 599 ~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~-~---~i~~~i~~el--~~g~qv~if~n~i~~ 672 (926)
T TIGR00580 599 SVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEYDP-E---LVREAIRREL--LRGGQVFYVHNRIES 672 (926)
T ss_pred CCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEecCH-H---HHHHHHHHHH--HcCCeEEEEECCcHH
Confidence 5789999999977766542 22 33344432 234577777664422 1 1122222211 236899999999999
Q ss_pred HHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCcc
Q 038855 159 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVK 234 (260)
Q Consensus 159 ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~ 234 (260)
++.+++.|++.+ .++.+..+||.|++++|.++++.|+.|+.+|||||+++|+|||||++++||..+.+.
T Consensus 673 ~e~l~~~L~~~~-------p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~ 741 (926)
T TIGR00580 673 IEKLATQLRELV-------PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADK 741 (926)
T ss_pred HHHHHHHHHHhC-------CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCC
Confidence 999999998853 367899999999999999999999999999999999999999999999999765543
No 55
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.75 E-value=4.5e-17 Score=153.68 Aligned_cols=144 Identities=19% Similarity=0.214 Sum_probs=96.1
Q ss_pred CceEEEEeccCCHHHHH---hh--hCCCcEEEecCc--ee--------------------eeeEEEeeCCCcchHHHHH-
Q 038855 83 PLKLIIMSASLDARGFS---EY--FGCAKAVHVQGR--QF--------------------PVEILYTLYPEPDFLDATL- 134 (260)
Q Consensus 83 ~~qlil~SATl~~~~~~---~~--~~~~~~v~v~~~--~~--------------------~v~~~~~~~~~~~~~~~~~- 134 (260)
..++++||||++..... +. + +.+++.+.|. .+ ++++.+.. ...+....+
T Consensus 181 ~~~~i~lSAT~~~~~~~~l~~~~~~-~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~l~ 257 (357)
T TIGR03158 181 RRKFVFLSATPDPALILRLQNAKQA-GVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP--APDFKEEELS 257 (357)
T ss_pred CCcEEEEecCCCHHHHHHHHhcccc-CceeeeecCcccccCCChhhhccccccccceeccceEEEEEe--CCchhHHHHH
Confidence 35899999999764333 32 3 3456666555 11 35554544 222222222
Q ss_pred ---HHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEe
Q 038855 135 ---ITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILA 211 (260)
Q Consensus 135 ---~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlva 211 (260)
..+.+......++++||||||+..++.+++.|++.- .++.+..+||.+++.+|.++. +..||||
T Consensus 258 ~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~-------~~~~~~~l~g~~~~~~R~~~~------~~~iLVa 324 (357)
T TIGR03158 258 ELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQG-------LGDDIGRITGFAPKKDRERAM------QFDILLG 324 (357)
T ss_pred HHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhC-------CCceEEeeecCCCHHHHHHhc------cCCEEEE
Confidence 223333333456799999999999999999998730 146788999999999998764 5689999
Q ss_pred cCcccccCCCCCceEEEeCCCccceeeecCCCc
Q 038855 212 TNIAETSVTIPGIKYVIDPGFVKARSYDPVKGM 244 (260)
Q Consensus 212 Tdiae~gidIp~V~~VId~g~~~~~~yd~~~g~ 244 (260)
|+++|||||||.+ +|| +.......|-++.|.
T Consensus 325 Tdv~~rGiDi~~~-~vi-~~p~~~~~yiqR~GR 355 (357)
T TIGR03158 325 TSTVDVGVDFKRD-WLI-FSARDAAAFWQRLGR 355 (357)
T ss_pred ecHHhcccCCCCc-eEE-ECCCCHHHHhhhccc
Confidence 9999999999998 555 222223567777764
No 56
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=3.3e-17 Score=155.10 Aligned_cols=181 Identities=11% Similarity=0.245 Sum_probs=143.0
Q ss_pred CCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCceEE
Q 038855 8 LSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLKLI 87 (260)
Q Consensus 8 L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qli 87 (260)
...++++|+|||||+... ++...+.......++ ..|++
T Consensus 167 ~~~iKmfvlDEaDEmLs~-gfkdqI~~if~~lp~-----------------------------------------~vQv~ 204 (397)
T KOG0327|consen 167 TDGIKMFVLDEADEMLSR-GFKDQIYDIFQELPS-----------------------------------------DVQVV 204 (397)
T ss_pred ccceeEEeecchHhhhcc-chHHHHHHHHHHcCc-----------------------------------------chhhe
Confidence 456899999999985433 444444433334454 67999
Q ss_pred EEeccCCHHHH--H-hhhCCCcEEEecCceee---eeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHH
Q 038855 88 IMSASLDARGF--S-EYFGCAKAVHVQGRQFP---VEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIES 161 (260)
Q Consensus 88 l~SATl~~~~~--~-~~~~~~~~v~v~~~~~~---v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve~ 161 (260)
++|||+..+.+ . +|+..+-.+.+...... ++++|+....+. ++.+++.++. .-.+.+||+||++.+..
T Consensus 205 l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~----k~~~l~dl~~--~~~q~~if~nt~r~v~~ 278 (397)
T KOG0327|consen 205 LLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE----KLDTLCDLYR--RVTQAVIFCNTRRKVDN 278 (397)
T ss_pred eecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc----cccHHHHHHH--hhhcceEEecchhhHHH
Confidence 99999965543 3 46555555555544322 456677655554 7777888777 56789999999999999
Q ss_pred HHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccce-eeec
Q 038855 162 VERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKAR-SYDP 240 (260)
Q Consensus 162 v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~-~yd~ 240 (260)
+..+|.. .++.+..+||.+.+.+|..++..|+.|..+|||+|++++||+|+-.+..|||+.+|.++ .|-|
T Consensus 279 l~~~L~~---------~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yih 349 (397)
T KOG0327|consen 279 LTDKLRA---------HGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIH 349 (397)
T ss_pred HHHHHhh---------CCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhh
Confidence 9999966 48999999999999999999999999999999999999999999999999999999885 6999
Q ss_pred CCCce
Q 038855 241 VKGME 245 (260)
Q Consensus 241 ~~g~~ 245 (260)
++|..
T Consensus 350 R~gr~ 354 (397)
T KOG0327|consen 350 RIGRA 354 (397)
T ss_pred hcccc
Confidence 88864
No 57
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.72 E-value=1.3e-16 Score=162.24 Aligned_cols=140 Identities=16% Similarity=0.163 Sum_probs=100.9
Q ss_pred CceEEEEeccCCHHHHH-hhhCCCcEEEe---cCceeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHH-
Q 038855 83 PLKLIIMSASLDARGFS-EYFGCAKAVHV---QGRQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQE- 157 (260)
Q Consensus 83 ~~qlil~SATl~~~~~~-~~~~~~~~v~v---~~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~- 157 (260)
..++++||||..++.+. .+++...+..+ +....|+++.+...... ...+..+.... ....+++||||..+
T Consensus 409 ~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~---~~~~~~i~~~~--~~g~q~~v~~~~ie~ 483 (681)
T PRK10917 409 NPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPDSRR---DEVYERIREEI--AKGRQAYVVCPLIEE 483 (681)
T ss_pred CCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEEEeCcccH---HHHHHHHHHHH--HcCCcEEEEEccccc
Confidence 46799999999777655 34454333332 22234666665543322 22333333322 34679999999644
Q ss_pred -------HHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeC
Q 038855 158 -------EIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDP 230 (260)
Q Consensus 158 -------~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~ 230 (260)
.++.+++.|.+.+ .++.+..+||+|++++|.++++.|++|+.+|||||+++|+|+|+|++++||+.
T Consensus 484 s~~l~~~~~~~~~~~L~~~~-------~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~ 556 (681)
T PRK10917 484 SEKLDLQSAEETYEELQEAF-------PELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIE 556 (681)
T ss_pred ccchhHHHHHHHHHHHHHHC-------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEe
Confidence 4556666776643 24789999999999999999999999999999999999999999999999999
Q ss_pred CCcc
Q 038855 231 GFVK 234 (260)
Q Consensus 231 g~~~ 234 (260)
+.+.
T Consensus 557 ~~~r 560 (681)
T PRK10917 557 NAER 560 (681)
T ss_pred CCCC
Confidence 8875
No 58
>PRK00254 ski2-like helicase; Provisional
Probab=99.72 E-value=1.2e-16 Score=162.90 Aligned_cols=144 Identities=15% Similarity=0.211 Sum_probs=98.2
Q ss_pred CceEEEEeccC-CHHHHHhhhCCCcEEEecCceeeeeEE-Ee----eCCCc---chHHHHHHHHHHHHhhcCCCCEEEEe
Q 038855 83 PLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFPVEIL-YT----LYPEP---DFLDATLITIFQVHLDEAPGDILVFL 153 (260)
Q Consensus 83 ~~qlil~SATl-~~~~~~~~~~~~~~v~v~~~~~~v~~~-~~----~~~~~---~~~~~~~~~l~~i~~~~~~g~iLVFl 153 (260)
..|+++||||+ +++.+.+|++... +....+..|+... +. ..... .+.......+..... ..+++|||+
T Consensus 169 ~~qiI~lSATl~n~~~la~wl~~~~-~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~ 245 (720)
T PRK00254 169 RAQILGLSATVGNAEELAEWLNAEL-VVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFV 245 (720)
T ss_pred CCcEEEEEccCCCHHHHHHHhCCcc-ccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEE
Confidence 57899999999 7889999997543 2222222232211 11 00110 111122222333332 367899999
Q ss_pred CCHHHHHHHHHHHHHHHhcCc----------------cCC--------CCeEEEEecCCCCHHHHHHHhcccCCCCeEEE
Q 038855 154 TGQEEIESVERLVQERLLQLP----------------EAS--------RKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVI 209 (260)
Q Consensus 154 ~~~~~ve~v~~~L~~~l~~~~----------------~~~--------~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVl 209 (260)
+|+..++.++..|...+...- ... -...+.++||+|++++|..+.+.|++|..+||
T Consensus 246 ~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VL 325 (720)
T PRK00254 246 NTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVI 325 (720)
T ss_pred cChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEE
Confidence 999999998887755432100 000 02358999999999999999999999999999
Q ss_pred EecCcccccCCCCCceEEEe
Q 038855 210 LATNIAETSVTIPGIKYVID 229 (260)
Q Consensus 210 vaTdiae~gidIp~V~~VId 229 (260)
|||+.+++|+|+|.+++||.
T Consensus 326 vaT~tLa~Gvnipa~~vVI~ 345 (720)
T PRK00254 326 TATPTLSAGINLPAFRVIIR 345 (720)
T ss_pred EeCcHHhhhcCCCceEEEEC
Confidence 99999999999999999995
No 59
>PRK09401 reverse gyrase; Reviewed
Probab=99.71 E-value=7e-17 Score=172.27 Aligned_cols=132 Identities=17% Similarity=0.225 Sum_probs=96.6
Q ss_pred CceEEEEeccCCHHHHH-hhhCCCcEEEecCcee---eeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHH
Q 038855 83 PLKLIIMSASLDARGFS-EYFGCAKAVHVQGRQF---PVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEE 158 (260)
Q Consensus 83 ~~qlil~SATl~~~~~~-~~~~~~~~v~v~~~~~---~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ 158 (260)
..|+++||||+.++.+. .+|...-.+.+..... .+.+.|.... + ....+..+.... ++.+|||||++..
T Consensus 268 ~~q~ilfSAT~~~~~~~~~l~~~ll~~~v~~~~~~~rnI~~~yi~~~--~----k~~~L~~ll~~l-~~~~LIFv~t~~~ 340 (1176)
T PRK09401 268 KGVLVVSSATGRPRGNRVKLFRELLGFEVGSPVFYLRNIVDSYIVDE--D----SVEKLVELVKRL-GDGGLIFVPSDKG 340 (1176)
T ss_pred CceEEEEeCCCCccchHHHHhhccceEEecCcccccCCceEEEEEcc--c----HHHHHHHHHHhc-CCCEEEEEecccC
Confidence 57899999999765433 2333332234433322 3566666543 2 222333443333 3579999999777
Q ss_pred ---HHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEe----cCcccccCCCCC-ceEEEeC
Q 038855 159 ---IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILA----TNIAETSVTIPG-IKYVIDP 230 (260)
Q Consensus 159 ---ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlva----Tdiae~gidIp~-V~~VId~ 230 (260)
++.+++.|+. .++.+..+||++ .+.++.|++|+.+|||| ||+|+||||+|+ |+|||++
T Consensus 341 ~~~ae~l~~~L~~---------~gi~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y 406 (1176)
T PRK09401 341 KEYAEELAEYLED---------LGINAELAISGF-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFY 406 (1176)
T ss_pred hHHHHHHHHHHHH---------CCCcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEe
Confidence 9999999988 489999999999 23459999999999999 799999999999 8999999
Q ss_pred CCccc
Q 038855 231 GFVKA 235 (260)
Q Consensus 231 g~~~~ 235 (260)
|+|+-
T Consensus 407 ~vP~~ 411 (1176)
T PRK09401 407 GVPKF 411 (1176)
T ss_pred CCCCE
Confidence 99993
No 60
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.69 E-value=3.9e-16 Score=160.59 Aligned_cols=176 Identities=19% Similarity=0.225 Sum_probs=133.9
Q ss_pred CCCCcccEEEEecCCc-----CCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCC
Q 038855 6 PYLSRYSVIIVDEAHE-----RTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRK 80 (260)
Q Consensus 6 ~~L~~~~~vIlDEahe-----r~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (260)
..|.++++||+||+|+ |+.+.-+.|. ++.+..+
T Consensus 145 ~~l~~vr~VIVDEiHel~~sKRG~~Lsl~Le---RL~~l~~--------------------------------------- 182 (814)
T COG1201 145 ELLRDVRYVIVDEIHALAESKRGVQLALSLE---RLRELAG--------------------------------------- 182 (814)
T ss_pred HHhcCCcEEEeehhhhhhccccchhhhhhHH---HHHhhCc---------------------------------------
Confidence 3578999999999996 5554444444 4433333
Q ss_pred CCCceEEEEeccC-CHHHHHhhhCCC----cEEEecCce-eeeeEEEeeCCC---cchHHHHHHHHHHHHhhcCCCCEEE
Q 038855 81 FPPLKLIIMSASL-DARGFSEYFGCA----KAVHVQGRQ-FPVEILYTLYPE---PDFLDATLITIFQVHLDEAPGDILV 151 (260)
Q Consensus 81 ~~~~qlil~SATl-~~~~~~~~~~~~----~~v~v~~~~-~~v~~~~~~~~~---~~~~~~~~~~l~~i~~~~~~g~iLV 151 (260)
++|-|..|||. +++..++|+.+. .++.+.... ..++........ ...+......+..+.+.+ ..+||
T Consensus 183 --~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~--~ttLI 258 (814)
T COG1201 183 --DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVKKH--RTTLI 258 (814)
T ss_pred --ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHHhhc--CcEEE
Confidence 57899999999 788899998654 455555442 223333222111 122344555555555554 48999
Q ss_pred EeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCC
Q 038855 152 FLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPG 231 (260)
Q Consensus 152 Fl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g 231 (260)
|+||+..+|.++..|.+.. ...+..+||+++.++|..+.+.+++|..+++|||.-.|-||||.+|+.||+.|
T Consensus 259 F~NTR~~aE~l~~~L~~~~--------~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~ 330 (814)
T COG1201 259 FTNTRSGAERLAFRLKKLG--------PDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLG 330 (814)
T ss_pred EEeChHHHHHHHHHHHHhc--------CCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeC
Confidence 9999999999999999862 37899999999999999999999999999999999999999999999999999
Q ss_pred Cccc
Q 038855 232 FVKA 235 (260)
Q Consensus 232 ~~~~ 235 (260)
=|+.
T Consensus 331 SP~s 334 (814)
T COG1201 331 SPKS 334 (814)
T ss_pred CcHH
Confidence 9886
No 61
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.69 E-value=3.9e-16 Score=157.27 Aligned_cols=140 Identities=15% Similarity=0.166 Sum_probs=98.5
Q ss_pred CceEEEEeccCCHHHHHh-hhCCCcEE---EecCceeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHH-
Q 038855 83 PLKLIIMSASLDARGFSE-YFGCAKAV---HVQGRQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQE- 157 (260)
Q Consensus 83 ~~qlil~SATl~~~~~~~-~~~~~~~v---~v~~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~- 157 (260)
..++++||||..++.+.. .++..... ..+....|+...+...... ...+..+.... ....+++||||..+
T Consensus 386 ~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i~~~~~~~~~~---~~~~~~i~~~l--~~g~q~~v~~~~i~~ 460 (630)
T TIGR00643 386 TPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGRKPITTVLIKHDEK---DIVYEFIEEEI--AKGRQAYVVYPLIEE 460 (630)
T ss_pred CCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCceEEEEeCcchH---HHHHHHHHHHH--HhCCcEEEEEccccc
Confidence 457999999986665542 33432222 2233335666665543221 22222222211 23578999999864
Q ss_pred -------HHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeC
Q 038855 158 -------EIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDP 230 (260)
Q Consensus 158 -------~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~ 230 (260)
.++.+++.|.+.+ .++.+..+||+|++++|.++++.|++|+.+|||||+++|+|||+|++++||..
T Consensus 461 s~~~~~~~a~~~~~~L~~~~-------~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~ 533 (630)
T TIGR00643 461 SEKLDLKAAEALYERLKKAF-------PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIE 533 (630)
T ss_pred cccchHHHHHHHHHHHHhhC-------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEe
Confidence 4556666666542 37789999999999999999999999999999999999999999999999998
Q ss_pred CCcc
Q 038855 231 GFVK 234 (260)
Q Consensus 231 g~~~ 234 (260)
+.++
T Consensus 534 ~~~r 537 (630)
T TIGR00643 534 DAER 537 (630)
T ss_pred CCCc
Confidence 8775
No 62
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.68 E-value=8.9e-17 Score=158.46 Aligned_cols=188 Identities=18% Similarity=0.232 Sum_probs=140.8
Q ss_pred CCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCceE
Q 038855 7 YLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLKL 86 (260)
Q Consensus 7 ~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql 86 (260)
+|+.+.++|+|||| |.++...+...+..+..+.. + +..++
T Consensus 285 dl~~V~~lV~dEaD-~lfe~~~f~~Qla~I~sac~------------------------------------s---~~i~~ 324 (593)
T KOG0344|consen 285 DLSKVEWLVVDEAD-LLFEPEFFVEQLADIYSACQ------------------------------------S---PDIRV 324 (593)
T ss_pred hhheeeeEeechHH-hhhChhhHHHHHHHHHHHhc------------------------------------C---cchhh
Confidence 78999999999997 44444233333333333222 0 27789
Q ss_pred EEEeccC--CHHHHHhh-hCCCcEEEecCce---eeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHH
Q 038855 87 IIMSASL--DARGFSEY-FGCAKAVHVQGRQ---FPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIE 160 (260)
Q Consensus 87 il~SATl--~~~~~~~~-~~~~~~v~v~~~~---~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve 160 (260)
-+||||+ .++.+++- ..+...+.+..+. ..|++-.+.+.... .++..+.++...--+.++|||+-+.+.+.
T Consensus 325 a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~---~K~lA~rq~v~~g~~PP~lIfVQs~eRak 401 (593)
T KOG0344|consen 325 ALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEK---GKLLALRQLVASGFKPPVLIFVQSKERAK 401 (593)
T ss_pred hhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecch---hHHHHHHHHHhccCCCCeEEEEecHHHHH
Confidence 9999999 45667763 3444455554432 23444444433322 35555677766666789999999999999
Q ss_pred HHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc-eeee
Q 038855 161 SVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA-RSYD 239 (260)
Q Consensus 161 ~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~-~~yd 239 (260)
.++..|... .++.+..+||..++.+|..++++|+.|+..||+||++.+||+|+-||..|||+++|.. .+|-
T Consensus 402 ~L~~~L~~~--------~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syi 473 (593)
T KOG0344|consen 402 QLFEELEIY--------DNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYI 473 (593)
T ss_pred HHHHHhhhc--------cCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHH
Confidence 999998621 5889999999999999999999999999999999999999999999999999999998 5799
Q ss_pred cCCCce
Q 038855 240 PVKGME 245 (260)
Q Consensus 240 ~~~g~~ 245 (260)
|+.|++
T Consensus 474 hrIGRt 479 (593)
T KOG0344|consen 474 HRIGRT 479 (593)
T ss_pred HHhhcc
Confidence 988864
No 63
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.68 E-value=6e-17 Score=167.46 Aligned_cols=185 Identities=16% Similarity=0.240 Sum_probs=143.4
Q ss_pred CCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCceE
Q 038855 7 YLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLKL 86 (260)
Q Consensus 7 ~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql 86 (260)
.|.+++++|+|||| |++++.+.-...+.+.+.++ .+|+
T Consensus 512 nlrR~t~lv~deaD-rmfdmgfePq~~~Ii~nlrp-----------------------------------------drQt 549 (997)
T KOG0334|consen 512 NLRRVTYLVLDEAD-RMFDMGFEPQITRILQNLRP-----------------------------------------DRQT 549 (997)
T ss_pred cccccceeeechhh-hhheeccCcccchHHhhcch-----------------------------------------hhhh
Confidence 46678899999997 78898888888888888887 8999
Q ss_pred EEEeccCCH--HHHHh-hhCCCcEEEecCce---eeeeEEEeeCC-CcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHH
Q 038855 87 IIMSASLDA--RGFSE-YFGCAKAVHVQGRQ---FPVEILYTLYP-EPDFLDATLITIFQVHLDEAPGDILVFLTGQEEI 159 (260)
Q Consensus 87 il~SATl~~--~~~~~-~~~~~~~v~v~~~~---~~v~~~~~~~~-~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~v 159 (260)
++||||+.. +.++. .+.-+-.+.+.++. --|++....++ +.......+.+|-. ....+++|||+..++.|
T Consensus 550 vlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e---~~e~~~tiiFv~~qe~~ 626 (997)
T KOG0334|consen 550 VLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGE---RYEDGKTIIFVDKQEKA 626 (997)
T ss_pred hhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHH---HhhcCCEEEEEcCchHH
Confidence 999999943 34443 33322234444432 13555555555 44433333333222 22378999999999999
Q ss_pred HHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc-eee
Q 038855 160 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA-RSY 238 (260)
Q Consensus 160 e~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~-~~y 238 (260)
+.+.+.|++ .++.+..+||+.++..|..+++.|++|..++||||++++||+|++++..|||+.+|.. ..|
T Consensus 627 d~l~~~L~~---------ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edy 697 (997)
T KOG0334|consen 627 DALLRDLQK---------AGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDY 697 (997)
T ss_pred HHHHHHHHh---------cCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHH
Confidence 999999998 5999999999999999999999999999999999999999999999999999999997 567
Q ss_pred ecCCCce
Q 038855 239 DPVKGME 245 (260)
Q Consensus 239 d~~~g~~ 245 (260)
-|+.|-+
T Consensus 698 vhR~gRT 704 (997)
T KOG0334|consen 698 VHRVGRT 704 (997)
T ss_pred HHHhccc
Confidence 7766543
No 64
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.68 E-value=3.3e-16 Score=167.22 Aligned_cols=133 Identities=18% Similarity=0.247 Sum_probs=95.7
Q ss_pred eEEEEeccCCHHHHH-hhhCCCcEEEecCcee---eeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCH---H
Q 038855 85 KLIIMSASLDARGFS-EYFGCAKAVHVQGRQF---PVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQ---E 157 (260)
Q Consensus 85 qlil~SATl~~~~~~-~~~~~~~~v~v~~~~~---~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~---~ 157 (260)
++++||||..++... .+|...--+.+..... .+.+.|..... .. ..+..+.... .+.+|||++++ +
T Consensus 268 ~li~~SAT~~p~~~~~~l~r~ll~~~v~~~~~~~r~I~~~~~~~~~--~~----~~L~~ll~~l-~~~~IVFv~t~~~~~ 340 (1171)
T TIGR01054 268 CLIVSSATGRPRGKRAKLFRELLGFEVGGGSDTLRNVVDVYVEDED--LK----ETLLEIVKKL-GTGGIVYVSIDYGKE 340 (1171)
T ss_pred EEEEEeCCCCccccHHHHcccccceEecCccccccceEEEEEeccc--HH----HHHHHHHHHc-CCCEEEEEeccccHH
Confidence 478899995333333 3443332344433322 35566654322 11 2233333332 35799999999 9
Q ss_pred HHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEe----cCcccccCCCCC-ceEEEeCCC
Q 038855 158 EIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILA----TNIAETSVTIPG-IKYVIDPGF 232 (260)
Q Consensus 158 ~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlva----Tdiae~gidIp~-V~~VId~g~ 232 (260)
.++.+++.|++ .++.+..+||++++ ++++.|++|+.+|||| ||+++||||||+ |+|||++|+
T Consensus 341 ~a~~l~~~L~~---------~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~ 407 (1171)
T TIGR01054 341 KAEEIAEFLEN---------HGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGV 407 (1171)
T ss_pred HHHHHHHHHHh---------CCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECC
Confidence 99999999987 48999999999974 5899999999999999 599999999999 899999999
Q ss_pred cccee
Q 038855 233 VKARS 237 (260)
Q Consensus 233 ~~~~~ 237 (260)
|+.+.
T Consensus 408 P~~~~ 412 (1171)
T TIGR01054 408 PKFKV 412 (1171)
T ss_pred CCEEE
Confidence 98754
No 65
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.67 E-value=2.8e-16 Score=156.82 Aligned_cols=189 Identities=13% Similarity=0.162 Sum_probs=156.3
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCce
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLK 85 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 85 (260)
.+.++++.+||||||. .+++..+..-+.++.+.-++ ..|
T Consensus 163 ~n~s~vrlfVLDEADk-L~~t~sfq~~In~ii~slP~----------------------------------------~rQ 201 (980)
T KOG4284|consen 163 MNMSHVRLFVLDEADK-LMDTESFQDDINIIINSLPQ----------------------------------------IRQ 201 (980)
T ss_pred CCccceeEEEeccHHh-hhchhhHHHHHHHHHHhcch----------------------------------------hhe
Confidence 4678999999999984 56666666666666654332 789
Q ss_pred EEEEeccCCH---HHHHhhhCCCcEEEecCc---eeeeeEEEeeCCCcch----HHHHHHHHHHHHhhcCCCCEEEEeCC
Q 038855 86 LIIMSASLDA---RGFSEYFGCAKAVHVQGR---QFPVEILYTLYPEPDF----LDATLITIFQVHLDEAPGDILVFLTG 155 (260)
Q Consensus 86 lil~SATl~~---~~~~~~~~~~~~v~v~~~---~~~v~~~~~~~~~~~~----~~~~~~~l~~i~~~~~~g~iLVFl~~ 155 (260)
++.+|||.+. +.+++|+.++..+....+ .+-+++++.....++. +..++..|-+++...+..+.||||+.
T Consensus 202 v~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~ 281 (980)
T KOG4284|consen 202 VAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQ 281 (980)
T ss_pred eeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhh
Confidence 9999999953 467889999888877654 2557888776655532 33466777788888888899999999
Q ss_pred HHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc
Q 038855 156 QEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA 235 (260)
Q Consensus 156 ~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~ 235 (260)
...++.++..|.. .|+.+..+.|.|.|.+|.-+++..++...+|||+||+.+||||-|+|.+|||.+.|-.
T Consensus 282 ~sra~~~a~~L~s---------sG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d 352 (980)
T KOG4284|consen 282 ISRAEPIATHLKS---------SGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPAD 352 (980)
T ss_pred hhhhhHHHHHhhc---------cCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcc
Confidence 9999999999988 5999999999999999999999999999999999999999999999999999999987
Q ss_pred -eeeecCCCc
Q 038855 236 -RSYDPVKGM 244 (260)
Q Consensus 236 -~~yd~~~g~ 244 (260)
..|-|+.|.
T Consensus 353 ~eTY~HRIGR 362 (980)
T KOG4284|consen 353 EETYFHRIGR 362 (980)
T ss_pred hHHHHHHhhh
Confidence 458887663
No 66
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.65 E-value=4.6e-16 Score=149.97 Aligned_cols=151 Identities=16% Similarity=0.284 Sum_probs=122.7
Q ss_pred CceEEEEeccC--CHHHHHhh-hCCCcEEEecCceee----eeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCC
Q 038855 83 PLKLIIMSASL--DARGFSEY-FGCAKAVHVQGRQFP----VEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTG 155 (260)
Q Consensus 83 ~~qlil~SATl--~~~~~~~~-~~~~~~v~v~~~~~~----v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~ 155 (260)
..|.++||||+ |...+.+. +.++-++.+.....| +.++++.+.+.+..- .+-.++.+-. -.|++|||+||
T Consensus 201 ~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKfl-llyallKL~L--I~gKsliFVNt 277 (569)
T KOG0346|consen 201 IYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFL-LLYALLKLRL--IRGKSLIFVNT 277 (569)
T ss_pred hhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHH-HHHHHHHHHH--hcCceEEEEec
Confidence 78999999999 56677774 456666777666544 678888887666322 2222333333 36899999999
Q ss_pred HHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC----------------------
Q 038855 156 QEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN---------------------- 213 (260)
Q Consensus 156 ~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd---------------------- 213 (260)
...+-.+.-.|+.. ++..+.+.|.||...|.-++..|..|...||||||
T Consensus 278 Idr~YrLkLfLeqF---------GiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~k 348 (569)
T KOG0346|consen 278 IDRCYRLKLFLEQF---------GIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPK 348 (569)
T ss_pred hhhhHHHHHHHHHh---------CcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCC
Confidence 99999988888885 99999999999999999999999999999999999
Q ss_pred -------------cccccCCCCCceEEEeCCCccc-eeeecCCCce
Q 038855 214 -------------IAETSVTIPGIKYVIDPGFVKA-RSYDPVKGME 245 (260)
Q Consensus 214 -------------iae~gidIp~V~~VId~g~~~~-~~yd~~~g~~ 245 (260)
=++||||+-.|..|||++||.. .+|.|+.|.+
T Consensus 349 ndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRT 394 (569)
T KOG0346|consen 349 NDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRT 394 (569)
T ss_pred CccccccccCchhchhccccchheeeeeecCCCCchHHHHHhcccc
Confidence 1469999999999999999998 6899988864
No 67
>PRK14701 reverse gyrase; Provisional
Probab=99.63 E-value=1.9e-15 Score=165.18 Aligned_cols=130 Identities=15% Similarity=0.121 Sum_probs=96.4
Q ss_pred EEEEeccCCHH-HHHhhhCCCcEEEecCcee---eeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHH--
Q 038855 86 LIIMSASLDAR-GFSEYFGCAKAVHVQGRQF---PVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEI-- 159 (260)
Q Consensus 86 lil~SATl~~~-~~~~~~~~~~~v~v~~~~~---~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~v-- 159 (260)
++++|||+..+ ...++|...-.+.+..... .+.+.|........ ..+..+.... +..+||||++++.+
T Consensus 272 ll~~SAT~~~r~~~~~l~~~~l~f~v~~~~~~lr~i~~~yi~~~~~~k-----~~L~~ll~~~-g~~gIVF~~t~~~~e~ 345 (1638)
T PRK14701 272 LIVASATGKAKGDRVKLYRELLGFEVGSGRSALRNIVDVYLNPEKIIK-----EHVRELLKKL-GKGGLIFVPIDEGAEK 345 (1638)
T ss_pred EEEEecCCCchhHHHHHhhcCeEEEecCCCCCCCCcEEEEEECCHHHH-----HHHHHHHHhC-CCCeEEEEeccccchH
Confidence 77899999754 3445665544455544332 24556654332221 2344444443 45799999998865
Q ss_pred -HHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEec----CcccccCCCCC-ceEEEeCCCc
Q 038855 160 -ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILAT----NIAETSVTIPG-IKYVIDPGFV 233 (260)
Q Consensus 160 -e~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaT----diae~gidIp~-V~~VId~g~~ 233 (260)
+.+++.|.+ .++.+..+||+ |.++++.|++|...||||| ++|+||||+|+ |+|||++|+|
T Consensus 346 ae~la~~L~~---------~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~P 411 (1638)
T PRK14701 346 AEEIEKYLLE---------DGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVP 411 (1638)
T ss_pred HHHHHHHHHH---------CCCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCC
Confidence 778888887 59999999995 8899999999999999999 69999999999 9999999999
Q ss_pred cc
Q 038855 234 KA 235 (260)
Q Consensus 234 ~~ 235 (260)
+-
T Consensus 412 k~ 413 (1638)
T PRK14701 412 KF 413 (1638)
T ss_pred CC
Confidence 93
No 68
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.60 E-value=6.1e-15 Score=141.63 Aligned_cols=183 Identities=16% Similarity=0.192 Sum_probs=133.3
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCce
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLK 85 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 85 (260)
-.|+.+.+||+|||| |.+.++|-..+-+.+...+. ..|
T Consensus 160 l~l~sveyVVfdEad-rlfemgfqeql~e~l~rl~~-----------------------------------------~~Q 197 (529)
T KOG0337|consen 160 LTLSSVEYVVFDEAD-RLFEMGFQEQLHEILSRLPE-----------------------------------------SRQ 197 (529)
T ss_pred ccccceeeeeehhhh-HHHhhhhHHHHHHHHHhCCC-----------------------------------------cce
Confidence 458899999999997 67777666555555555554 679
Q ss_pred EEEEeccCCHH--HHHh-hhCCCcEEEe--cCcee-eeeEEEeeCCCcchHHHHHHHHHHHHhhc-CCCCEEEEeCCHHH
Q 038855 86 LIIMSASLDAR--GFSE-YFGCAKAVHV--QGRQF-PVEILYTLYPEPDFLDATLITIFQVHLDE-APGDILVFLTGQEE 158 (260)
Q Consensus 86 lil~SATl~~~--~~~~-~~~~~~~v~v--~~~~~-~v~~~~~~~~~~~~~~~~~~~l~~i~~~~-~~g~iLVFl~~~~~ 158 (260)
.++||||+.-. .|.+ -+-++..+.+ +..-. .++..+......+ +...|+.+.... .+.+.+||++|+..
T Consensus 198 TllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~----K~aaLl~il~~~~~~~~t~vf~~tk~h 273 (529)
T KOG0337|consen 198 TLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAE----KEAALLSILGGRIKDKQTIVFVATKHH 273 (529)
T ss_pred EEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHH----HHHHHHHHHhccccccceeEEecccch
Confidence 99999999432 3443 2223333332 22211 2344444444433 333344444332 25689999999999
Q ss_pred HHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc-ee
Q 038855 159 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA-RS 237 (260)
Q Consensus 159 ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~-~~ 237 (260)
+|.+...|.. .++..-.++|+|+++.|..-+..|..++..+++.||+|+||+|||..+-|||+.+|.. +.
T Consensus 274 ve~~~~ll~~---------~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~kl 344 (529)
T KOG0337|consen 274 VEYVRGLLRD---------FGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKL 344 (529)
T ss_pred HHHHHHHHHh---------cCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCce
Confidence 9999999888 4889999999999999999999999999999999999999999999999999999765 55
Q ss_pred eecCCC
Q 038855 238 YDPVKG 243 (260)
Q Consensus 238 yd~~~g 243 (260)
|-|+-|
T Consensus 345 FvhRVg 350 (529)
T KOG0337|consen 345 FVHRVG 350 (529)
T ss_pred EEEEec
Confidence 666544
No 69
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.59 E-value=1.9e-15 Score=147.32 Aligned_cols=159 Identities=13% Similarity=0.249 Sum_probs=120.3
Q ss_pred CCCCCceEEEEeccC--CHHHHHhhh-CCCcEEEecC---ceee----eeEEEeeCCCcchHHHHHHHHHHHHhhcCCCC
Q 038855 79 RKFPPLKLIIMSASL--DARGFSEYF-GCAKAVHVQG---RQFP----VEILYTLYPEPDFLDATLITIFQVHLDEAPGD 148 (260)
Q Consensus 79 ~~~~~~qlil~SATl--~~~~~~~~~-~~~~~v~v~~---~~~~----v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~ 148 (260)
+-.+++..+++|||+ ++..+.++- +.+.+.++.+ ..|. +.++++...... .-..++++.......+
T Consensus 356 ~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~----kpl~~~~lI~~~k~~r 431 (620)
T KOG0350|consen 356 KLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKF----KPLAVYALITSNKLNR 431 (620)
T ss_pred CcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeeccccc----chHhHHHHHHHhhcce
Confidence 334567789999999 788888864 4444777764 2232 233344333222 1223444444455678
Q ss_pred EEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEE
Q 038855 149 ILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVI 228 (260)
Q Consensus 149 iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VI 228 (260)
+|+|+++.+.+..+...|.-.+.+ .++.+-.+.|++.+..|.+.++.|+.|..+||||||+.+||||+.+|+.||
T Consensus 432 ~lcf~~S~~sa~Rl~~~L~v~~~~-----~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VI 506 (620)
T KOG0350|consen 432 TLCFVNSVSSANRLAHVLKVEFCS-----DNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVI 506 (620)
T ss_pred EEEEecchHHHHHHHHHHHHHhcc-----ccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEe
Confidence 999999999999999999844432 355666699999999999999999999999999999999999999999999
Q ss_pred eCCCccc-eeeecCCCcee
Q 038855 229 DPGFVKA-RSYDPVKGMES 246 (260)
Q Consensus 229 d~g~~~~-~~yd~~~g~~~ 246 (260)
|+..|.. ..|-|+.|.+.
T Consensus 507 NYd~P~~~ktyVHR~GRTA 525 (620)
T KOG0350|consen 507 NYDPPASDKTYVHRAGRTA 525 (620)
T ss_pred ecCCCchhhHHHHhhcccc
Confidence 9999998 68999988653
No 70
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.54 E-value=3.1e-14 Score=142.38 Aligned_cols=145 Identities=15% Similarity=0.218 Sum_probs=104.0
Q ss_pred CceEEEEeccCCHHH---HHhhhCC-CcEEEecCceeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHH
Q 038855 83 PLKLIIMSASLDARG---FSEYFGC-AKAVHVQGRQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEE 158 (260)
Q Consensus 83 ~~qlil~SATl~~~~---~~~~~~~-~~~v~v~~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ 158 (260)
+..++.++||.+... +.+-++- ...+.+.+-.-| .++|...+..+.... +..+.. ...+..+..+|||.|+..
T Consensus 166 ~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRp-Ni~~~v~~~~~~~~q-~~fi~~-~~~~~~~~GIIYc~sRk~ 242 (590)
T COG0514 166 NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRP-NLALKVVEKGEPSDQ-LAFLAT-VLPQLSKSGIIYCLTRKK 242 (590)
T ss_pred CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCc-hhhhhhhhcccHHHH-HHHHHh-hccccCCCeEEEEeeHHh
Confidence 456999999997654 3333332 222222221111 222222222221111 112222 224456778999999999
Q ss_pred HHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccce-e
Q 038855 159 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKAR-S 237 (260)
Q Consensus 159 ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~-~ 237 (260)
+|.++++|+. .++.+.++||+|+.++|+.+.+.|.++..+|+|||....-|||.|||++||++++|... +
T Consensus 243 ~E~ia~~L~~---------~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~Es 313 (590)
T COG0514 243 VEELAEWLRK---------NGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIES 313 (590)
T ss_pred HHHHHHHHHH---------CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHH
Confidence 9999999998 48999999999999999999999999999999999999999999999999999999984 4
Q ss_pred ee
Q 038855 238 YD 239 (260)
Q Consensus 238 yd 239 (260)
|-
T Consensus 314 Yy 315 (590)
T COG0514 314 YY 315 (590)
T ss_pred HH
Confidence 54
No 71
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.53 E-value=6.9e-14 Score=138.63 Aligned_cols=165 Identities=21% Similarity=0.291 Sum_probs=132.8
Q ss_pred CCCCcccEEEEecCC-----cCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCC
Q 038855 6 PYLSRYSVIIVDEAH-----ERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRK 80 (260)
Q Consensus 6 ~~L~~~~~vIlDEah-----er~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (260)
..|.++.+||+||+| ||....|-|.+.|+.+ .+
T Consensus 334 ~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l---~~--------------------------------------- 371 (830)
T COG1202 334 KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYL---FP--------------------------------------- 371 (830)
T ss_pred CcccccceEEeeeeeeccchhcccchhhHHHHHHHh---CC---------------------------------------
Confidence 578899999999999 5666666566655555 33
Q ss_pred CCCceEEEEeccC-CHHHHHhhhCCCcEEEecCceeeeeEEEeeCCCcchHHHHHHHHHHHHh--------hcCCCCEEE
Q 038855 81 FPPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDFLDATLITIFQVHL--------DEAPGDILV 151 (260)
Q Consensus 81 ~~~~qlil~SATl-~~~~~~~~~~~~~~v~v~~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~--------~~~~g~iLV 151 (260)
.-|+|.+|||+ ++..++++++ ++.+.-+++..|++-|.+...... .+...+.++.+ .--.|++||
T Consensus 372 --~AQ~i~LSATVgNp~elA~~l~-a~lV~y~~RPVplErHlvf~~~e~---eK~~ii~~L~k~E~~~~sskg~rGQtIV 445 (830)
T COG1202 372 --GAQFIYLSATVGNPEELAKKLG-AKLVLYDERPVPLERHLVFARNES---EKWDIIARLVKREFSTESSKGYRGQTIV 445 (830)
T ss_pred --CCeEEEEEeecCChHHHHHHhC-CeeEeecCCCCChhHeeeeecCch---HHHHHHHHHHHHHHhhhhccCcCCceEE
Confidence 56899999999 9999999996 677788888889888877665322 12222322222 223689999
Q ss_pred EeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEE
Q 038855 152 FLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYV 227 (260)
Q Consensus 152 Fl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~V 227 (260)
|.+++..|..++..|.. +++.+.|+|++|+..+|.++...|.++...++|+|...+.|+|+|.-..+
T Consensus 446 FT~SRrr~h~lA~~L~~---------kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVI 512 (830)
T COG1202 446 FTYSRRRCHELADALTG---------KGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVI 512 (830)
T ss_pred EecchhhHHHHHHHhhc---------CCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHH
Confidence 99999999999999988 59999999999999999999999999999999999999999999965544
No 72
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.51 E-value=4.2e-13 Score=131.89 Aligned_cols=90 Identities=14% Similarity=0.114 Sum_probs=77.4
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEec-CcccccCCCCC
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILAT-NIAETSVTIPG 223 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaT-diae~gidIp~ 223 (260)
.++++|||++..+.++.+++.|.+ .++.+..+||++++++|.++++.|+.|...||||| +++++|+|+|+
T Consensus 343 ~~~~~lV~~~~~~h~~~L~~~L~~---------~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ 413 (501)
T PHA02558 343 KGENTFVMFKYVEHGKPLYEMLKK---------VYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKN 413 (501)
T ss_pred cCCCEEEEEEEHHHHHHHHHHHHH---------cCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecccccccc
Confidence 467899999999999999999988 37899999999999999999999999999999998 99999999999
Q ss_pred ceEEEeCCCccce-eeecCCC
Q 038855 224 IKYVIDPGFVKAR-SYDPVKG 243 (260)
Q Consensus 224 V~~VId~g~~~~~-~yd~~~g 243 (260)
+++||....++.. .|-.+.|
T Consensus 414 ld~vIl~~p~~s~~~~~QriG 434 (501)
T PHA02558 414 LHHVIFAHPSKSKIIVLQSIG 434 (501)
T ss_pred ccEEEEecCCcchhhhhhhhh
Confidence 9999977666543 3444444
No 73
>PRK09694 helicase Cas3; Provisional
Probab=99.50 E-value=7.3e-13 Score=138.16 Aligned_cols=83 Identities=11% Similarity=0.160 Sum_probs=68.7
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHH----HHHhccc-CCCC---eEEEEecCccc
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQ----MKVFAPA-AAGF---RKVILATNIAE 216 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r----~~v~~~~-~~g~---~kVlvaTdiae 216 (260)
.++++|||+||.+.++.+++.|++... ....+..+||.+++.+| .++++.| +.|+ .+|||||+++|
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~~------~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE 632 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELNN------TQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVE 632 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhCC------CCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchh
Confidence 467899999999999999999987421 24679999999999998 4567777 5565 47999999999
Q ss_pred ccCCCCCceEEEeCCCcc
Q 038855 217 TSVTIPGIKYVIDPGFVK 234 (260)
Q Consensus 217 ~gidIp~V~~VId~g~~~ 234 (260)
+|+|| +++++|.--.|.
T Consensus 633 ~GLDI-d~DvlItdlaPi 649 (878)
T PRK09694 633 QSLDL-DFDWLITQLCPV 649 (878)
T ss_pred heeec-CCCeEEECCCCH
Confidence 99999 689999866553
No 74
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.41 E-value=9.3e-13 Score=133.52 Aligned_cols=147 Identities=18% Similarity=0.123 Sum_probs=99.2
Q ss_pred eEEEEeccCC--HHHHHhhhCCCcEEEecCcee--e-eeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHH
Q 038855 85 KLIIMSASLD--ARGFSEYFGCAKAVHVQGRQF--P-VEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEI 159 (260)
Q Consensus 85 qlil~SATl~--~~~~~~~~~~~~~v~v~~~~~--~-v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~v 159 (260)
++..||||.. .+.|.+.++- .++.++...- . ....++.....+.+.+....+...+. .+.++|||++|++.+
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l-~vv~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~--~~~pvLIft~t~~~s 486 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGL-PVVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHA--QGRPVLVGTRSVAAS 486 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCC-CeEEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHHh--cCCCEEEEeCcHHHH
Confidence 4788999994 3456665543 3444544211 1 11112222333333333333322221 256799999999999
Q ss_pred HHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCC---Cce-----EEEeCC
Q 038855 160 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIP---GIK-----YVIDPG 231 (260)
Q Consensus 160 e~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp---~V~-----~VId~g 231 (260)
+.+.+.|.+ .++++..|||.+.+.++.-+. ++.+...|+||||+|+||+||+ +|. |||++.
T Consensus 487 e~L~~~L~~---------~gi~~~~Lhg~~~~rE~~ii~--~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d 555 (656)
T PRK12898 487 ERLSALLRE---------AGLPHQVLNAKQDAEEAAIVA--RAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTE 555 (656)
T ss_pred HHHHHHHHH---------CCCCEEEeeCCcHHHHHHHHH--HcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcC
Confidence 999999988 499999999997665555444 4444456999999999999999 777 999999
Q ss_pred Cccc-eeeecCCCce
Q 038855 232 FVKA-RSYDPVKGME 245 (260)
Q Consensus 232 ~~~~-~~yd~~~g~~ 245 (260)
+|.. +.|.++.|.+
T Consensus 556 ~P~s~r~y~hr~GRT 570 (656)
T PRK12898 556 RHDSARIDRQLAGRC 570 (656)
T ss_pred CCCCHHHHHHhcccc
Confidence 9998 5799887753
No 75
>PRK13766 Hef nuclease; Provisional
Probab=99.40 E-value=5.5e-12 Score=129.16 Aligned_cols=84 Identities=21% Similarity=0.358 Sum_probs=76.3
Q ss_pred cCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCC--------CCHHHHHHHhcccCCCCeEEEEecCcc
Q 038855 144 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSS--------LPSEQQMKVFAPAAAGFRKVILATNIA 215 (260)
Q Consensus 144 ~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~--------l~~~~r~~v~~~~~~g~~kVlvaTdia 215 (260)
...+++|||++++..++.+.+.|.. .++.+..+||. +++.+|.++++.|+.|..+|||||+++
T Consensus 363 ~~~~kvlIF~~~~~t~~~L~~~L~~---------~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~ 433 (773)
T PRK13766 363 NPDSRIIVFTQYRDTAEKIVDLLEK---------EGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVA 433 (773)
T ss_pred CCCCeEEEEeCcHHHHHHHHHHHHh---------CCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChh
Confidence 4578999999999999999999976 47788888886 999999999999999999999999999
Q ss_pred cccCCCCCceEEEeCCCccce
Q 038855 216 ETSVTIPGIKYVIDPGFVKAR 236 (260)
Q Consensus 216 e~gidIp~V~~VId~g~~~~~ 236 (260)
++|+|+|++++||+++.+..+
T Consensus 434 ~eGldi~~~~~VI~yd~~~s~ 454 (773)
T PRK13766 434 EEGLDIPSVDLVIFYEPVPSE 454 (773)
T ss_pred hcCCCcccCCEEEEeCCCCCH
Confidence 999999999999999987653
No 76
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.37 E-value=1.7e-12 Score=125.66 Aligned_cols=96 Identities=14% Similarity=0.279 Sum_probs=86.6
Q ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCC
Q 038855 143 DEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIP 222 (260)
Q Consensus 143 ~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp 222 (260)
.++-.+.+|||.|+.+|+.+++.+.+.- ...|+++.+||++...+|...++.|+.+..+.|||||+|+||+||-
T Consensus 502 ~h~mdkaiifcrtk~dcDnLer~~~qkg------g~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~ 575 (725)
T KOG0349|consen 502 RHAMDKAIIFCRTKQDCDNLERMMNQKG------GKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDIT 575 (725)
T ss_pred hhccCceEEEEeccccchHHHHHHHHcC------CccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhcccccc
Confidence 3456789999999999999999998853 2579999999999999999999999999999999999999999999
Q ss_pred CceEEEeCCCccce-eeecCCCc
Q 038855 223 GIKYVIDPGFVKAR-SYDPVKGM 244 (260)
Q Consensus 223 ~V~~VId~g~~~~~-~yd~~~g~ 244 (260)
++-+|||.-+|-.. -|-++.|.
T Consensus 576 g~p~~invtlpd~k~nyvhrigr 598 (725)
T KOG0349|consen 576 GLPFMINVTLPDDKTNYVHRIGR 598 (725)
T ss_pred CCceEEEEecCcccchhhhhhhc
Confidence 99999999999985 58888773
No 77
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.36 E-value=1.9e-11 Score=119.81 Aligned_cols=84 Identities=19% Similarity=0.278 Sum_probs=69.3
Q ss_pred cCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEe--------cCCCCHHHHHHHhcccCCCCeEEEEecCcc
Q 038855 144 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPI--------FSSLPSEQQMKVFAPAAAGFRKVILATNIA 215 (260)
Q Consensus 144 ~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~l--------h~~l~~~~r~~v~~~~~~g~~kVlvaTdia 215 (260)
.....++||..-++.++.+.+.|.+... ... +.+ -.+|+|.+|.++++.|++|..+|||||.|+
T Consensus 364 ~~~~RvIVFT~yRdTae~i~~~L~~~~~-------~~~-~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVg 435 (542)
T COG1111 364 NGDSRVIVFTEYRDTAEEIVNFLKKIGI-------KAR-VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVG 435 (542)
T ss_pred CCCceEEEEehhHhHHHHHHHHHHhcCC-------cce-eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccc
Confidence 3456899999999999999999988521 111 122 257999999999999999999999999999
Q ss_pred cccCCCCCceEEEeCCCccc
Q 038855 216 ETSVTIPGIKYVIDPGFVKA 235 (260)
Q Consensus 216 e~gidIp~V~~VId~g~~~~ 235 (260)
|-|+|||++++||=+.-+..
T Consensus 436 EEGLDIp~vDlVifYEpvpS 455 (542)
T COG1111 436 EEGLDIPEVDLVIFYEPVPS 455 (542)
T ss_pred cccCCCCcccEEEEecCCcH
Confidence 99999999999997665443
No 78
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.35 E-value=3.9e-12 Score=131.34 Aligned_cols=148 Identities=18% Similarity=0.201 Sum_probs=103.6
Q ss_pred eEEEEeccCC--HHHHHhhhCCCcEEEecCceeeeeEEEeeCCCcchHHHHHHHHHHHHhh--cCCCCEEEEeCCHHHHH
Q 038855 85 KLIIMSASLD--ARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDFLDATLITIFQVHLD--EAPGDILVFLTGQEEIE 160 (260)
Q Consensus 85 qlil~SATl~--~~~~~~~~~~~~~v~v~~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~g~iLVFl~~~~~ve 160 (260)
++..||.|.. .+.|.+.+ +-.++.+|.. .|+.-.-.......-...+...+...... ..+.++||||+|.+.++
T Consensus 365 kl~GmTGTa~t~~~e~~~~Y-~l~v~~IPt~-kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se 442 (790)
T PRK09200 365 KLSGMTGTAKTEEKEFFEVY-NMEVVQIPTN-RPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSE 442 (790)
T ss_pred HHhccCCCChHHHHHHHHHh-CCcEEECCCC-CCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHH
Confidence 4677888872 23444433 3466777654 23211100000000012233444433322 24678999999999999
Q ss_pred HHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCC---CCce-----EEEeCCC
Q 038855 161 SVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTI---PGIK-----YVIDPGF 232 (260)
Q Consensus 161 ~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidI---p~V~-----~VId~g~ 232 (260)
.+.+.|.+ .++++..+||.+.+.++..+..++.+| .|+||||+|+||+|| |+|. |||++.+
T Consensus 443 ~l~~~L~~---------~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~ 511 (790)
T PRK09200 443 TFSKLLDE---------AGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTER 511 (790)
T ss_pred HHHHHHHH---------CCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccC
Confidence 99999988 499999999999999998888887766 799999999999999 7999 9999999
Q ss_pred ccc-eeeecCCCce
Q 038855 233 VKA-RSYDPVKGME 245 (260)
Q Consensus 233 ~~~-~~yd~~~g~~ 245 (260)
|.. +.|.++.|.+
T Consensus 512 p~s~r~y~qr~GRt 525 (790)
T PRK09200 512 MESRRVDLQLRGRS 525 (790)
T ss_pred CCCHHHHHHhhccc
Confidence 987 5788877653
No 79
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.35 E-value=6e-12 Score=126.85 Aligned_cols=166 Identities=15% Similarity=0.193 Sum_probs=122.7
Q ss_pred CCCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCc
Q 038855 5 DPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPL 84 (260)
Q Consensus 5 d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (260)
+-.++++..+|+||-|. +++-++..-..+. +. .+
T Consensus 379 ~V~F~~LgLVIiDEQHR--------FGV~QR~~L~~KG------------------------------------~~--~P 412 (677)
T COG1200 379 KVEFHNLGLVIIDEQHR--------FGVHQRLALREKG------------------------------------EQ--NP 412 (677)
T ss_pred ceeecceeEEEEecccc--------ccHHHHHHHHHhC------------------------------------CC--CC
Confidence 46788999999999996 5555544433220 00 35
Q ss_pred eEEEEeccCCHHHHH-hhhCCCcE---EEecCceeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHH
Q 038855 85 KLIIMSASLDARGFS-EYFGCAKA---VHVQGRQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIE 160 (260)
Q Consensus 85 qlil~SATl~~~~~~-~~~~~~~~---v~v~~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve 160 (260)
.+++||||.-++.++ ..||+-.+ -..+...-|+.++.+.....+. .+..+..-+. .+.++-+-||=.++-|
T Consensus 413 h~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~---v~e~i~~ei~--~GrQaY~VcPLIeESE 487 (677)
T COG1200 413 HVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHERRPE---VYERIREEIA--KGRQAYVVCPLIEESE 487 (677)
T ss_pred cEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEeccccHHH---HHHHHHHHHH--cCCEEEEEeccccccc
Confidence 799999999888887 57777543 3445556788888887654432 3333333333 3568899999877655
Q ss_pred --------HHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEE
Q 038855 161 --------SVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVI 228 (260)
Q Consensus 161 --------~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VI 228 (260)
.+++.|+..+ .++.+..+||.|+..+..++|+.|++|...|||||.+.|.|||+|+.++.|
T Consensus 488 ~l~l~~a~~~~~~L~~~~-------~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMV 556 (677)
T COG1200 488 KLELQAAEELYEELKSFL-------PELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMV 556 (677)
T ss_pred cchhhhHHHHHHHHHHHc-------ccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEE
Confidence 4445555433 488899999999999999999999999999999999999999999999876
No 80
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.33 E-value=1.5e-11 Score=121.52 Aligned_cols=67 Identities=18% Similarity=0.188 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHH--HHHhcccCCCCeEEEEecCcccccCCCCCceEEE--eCCC
Q 038855 159 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQ--MKVFAPAAAGFRKVILATNIAETSVTIPGIKYVI--DPGF 232 (260)
Q Consensus 159 ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r--~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VI--d~g~ 232 (260)
++.+++.|.+.+ .+.++..+|+++++..+ .++++.|++|+..|||+|+++++|+|+|+|++|+ |.+.
T Consensus 271 te~~~e~l~~~f-------p~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~ 341 (505)
T TIGR00595 271 TEQVEEELAKLF-------PGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADS 341 (505)
T ss_pred HHHHHHHHHhhC-------CCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcc
Confidence 578888888764 36789999999988766 8899999999999999999999999999999984 6654
No 81
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.32 E-value=1.3e-11 Score=126.96 Aligned_cols=145 Identities=19% Similarity=0.212 Sum_probs=105.7
Q ss_pred eEEEEeccCC--HHHHHhhhCCCcEEEecCceeeeeEEE----eeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHH
Q 038855 85 KLIIMSASLD--ARGFSEYFGCAKAVHVQGRQFPVEILY----TLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEE 158 (260)
Q Consensus 85 qlil~SATl~--~~~~~~~~~~~~~v~v~~~~~~v~~~~----~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ 158 (260)
++..|+.|.. .+.|.+.+ +-.++.+|... |+.-.- +.......+.+.+..+.+.+ ..+.++||||++++.
T Consensus 361 kl~GmTGTa~~~~~Ef~~iY-~l~v~~IPt~k-p~~r~d~~d~i~~~~~~K~~ai~~~i~~~~--~~~~pvLIft~s~~~ 436 (762)
T TIGR03714 361 KLSGMTGTGKVAEKEFIETY-SLSVVKIPTNK-PIIRIDYPDKIYATLPEKLMATLEDVKEYH--ETGQPVLLITGSVEM 436 (762)
T ss_pred hhcccCCCChhHHHHHHHHh-CCCEEEcCCCC-CeeeeeCCCeEEECHHHHHHHHHHHHHHHh--hCCCCEEEEECcHHH
Confidence 4778888873 34455544 35567776542 321111 11112223333444333333 346789999999999
Q ss_pred HHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCC---------CceEEEe
Q 038855 159 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIP---------GIKYVID 229 (260)
Q Consensus 159 ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp---------~V~~VId 229 (260)
++.+.+.|.+ .++++..+||.+.++++..+..++++| .|+||||+|+||+||| ++.+|++
T Consensus 437 se~ls~~L~~---------~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit 505 (762)
T TIGR03714 437 SEIYSELLLR---------EGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGT 505 (762)
T ss_pred HHHHHHHHHH---------CCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEe
Confidence 9999999988 489999999999999998888888777 7999999999999999 9999999
Q ss_pred CCCccceeeecCCCc
Q 038855 230 PGFVKARSYDPVKGM 244 (260)
Q Consensus 230 ~g~~~~~~yd~~~g~ 244 (260)
+..|..+.+.++.|.
T Consensus 506 ~~~ps~rid~qr~GR 520 (762)
T TIGR03714 506 ERMENSRVDLQLRGR 520 (762)
T ss_pred cCCCCcHHHHHhhhc
Confidence 999998877887764
No 82
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.32 E-value=3.4e-11 Score=124.36 Aligned_cols=188 Identities=19% Similarity=0.307 Sum_probs=124.3
Q ss_pred CCCcccEEEEecCCc-----CCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCC
Q 038855 7 YLSRYSVIIVDEAHE-----RTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKF 81 (260)
Q Consensus 7 ~L~~~~~vIlDEahe-----r~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (260)
++..+++|||||+|- |+.- +..+..+......
T Consensus 143 ~~~~V~lvViDEiH~l~d~~RG~~---lE~iv~r~~~~~~---------------------------------------- 179 (766)
T COG1204 143 WIEEVDLVVIDEIHLLGDRTRGPV---LESIVARMRRLNE---------------------------------------- 179 (766)
T ss_pred hhhcccEEEEeeeeecCCcccCce---ehhHHHHHHhhCc----------------------------------------
Confidence 567899999999993 3322 3444444444433
Q ss_pred CCceEEEEeccC-CHHHHHhhhCCCcEEEecCce-------eeeeEEEeeCCCcc----hHHHHHHHHHHHHhhcCCCCE
Q 038855 82 PPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQ-------FPVEILYTLYPEPD----FLDATLITIFQVHLDEAPGDI 149 (260)
Q Consensus 82 ~~~qlil~SATl-~~~~~~~~~~~~~~v~v~~~~-------~~v~~~~~~~~~~~----~~~~~~~~l~~i~~~~~~g~i 149 (260)
..|++..|||+ +...++.|++.... ...-+. +.....+....... ..+.....+...+. ...|++
T Consensus 180 -~~rivgLSATlpN~~evA~wL~a~~~-~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~-~~~~qv 256 (766)
T COG1204 180 -LIRIVGLSATLPNAEEVADWLNAKLV-ESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESL-AEGGQV 256 (766)
T ss_pred -ceEEEEEeeecCCHHHHHHHhCCccc-ccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHH-hcCCeE
Confidence 57999999999 89999999976543 111110 11122222221111 11122222222222 247899
Q ss_pred EEEeCCHHHHHHHHHHHHHHHhcC----------------c----cCC--------CCeEEEEecCCCCHHHHHHHhccc
Q 038855 150 LVFLTGQEEIESVERLVQERLLQL----------------P----EAS--------RKLVTVPIFSSLPSEQQMKVFAPA 201 (260)
Q Consensus 150 LVFl~~~~~ve~v~~~L~~~l~~~----------------~----~~~--------~~~~~~~lh~~l~~~~r~~v~~~~ 201 (260)
|||++++......++.+...+... . ... -...+..+|++|+.++|.-+-..|
T Consensus 257 LvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~F 336 (766)
T COG1204 257 LVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAF 336 (766)
T ss_pred EEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHH
Confidence 999999999999999998533210 0 000 023578899999999999999999
Q ss_pred CCCCeEEEEecCcccccCCCCCceEEEeCCCccceeeecCCCc
Q 038855 202 AAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYDPVKGM 244 (260)
Q Consensus 202 ~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~~yd~~~g~ 244 (260)
+.|+.+||+||+..+.|+..|.=+.||-- ...|||..|+
T Consensus 337 r~g~ikVlv~TpTLA~GVNLPA~~VIIk~----~~~y~~~~g~ 375 (766)
T COG1204 337 RKGKIKVLVSTPTLAAGVNLPARTVIIKD----TRRYDPKGGI 375 (766)
T ss_pred hcCCceEEEechHHhhhcCCcceEEEEee----eEEEcCCCCe
Confidence 99999999999999999999987777732 3578885553
No 83
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.30 E-value=2.2e-11 Score=126.95 Aligned_cols=189 Identities=24% Similarity=0.284 Sum_probs=129.8
Q ss_pred CCCcccEEEEecCCc-CCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCce
Q 038855 7 YLSRYSVIIVDEAHE-RTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLK 85 (260)
Q Consensus 7 ~L~~~~~vIlDEahe-r~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 85 (260)
.++++++||+||+|- |....--+-.+++++..... +.+.++|
T Consensus 192 ~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~-------------------------------------~~~~~~q 234 (851)
T COG1205 192 LLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLR-------------------------------------RYGSPLQ 234 (851)
T ss_pred HHhcCcEEEEecceeccccchhHHHHHHHHHHHHHh-------------------------------------ccCCCce
Confidence 457799999999995 55555445556677665432 1112789
Q ss_pred EEEEeccC-CHHHHH-hhhCCCcEEEecCceee--eeEEEeeCCC---------cchHHHHHHHHHHHHhhcCCCCEEEE
Q 038855 86 LIIMSASL-DARGFS-EYFGCAKAVHVQGRQFP--VEILYTLYPE---------PDFLDATLITIFQVHLDEAPGDILVF 152 (260)
Q Consensus 86 lil~SATl-~~~~~~-~~~~~~~~v~v~~~~~~--v~~~~~~~~~---------~~~~~~~~~~l~~i~~~~~~g~iLVF 152 (260)
+|..|||+ ++..+. ++++..-...+.+...| -.......+. .+.. .....+..... ...-++|+|
T Consensus 235 ~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~-~~~~~~~~~~~-~~~~~tL~F 312 (851)
T COG1205 235 IICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSAL-AELATLAALLV-RNGIQTLVF 312 (851)
T ss_pred EEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchH-HHHHHHHHHHH-HcCceEEEE
Confidence 99999999 555444 67765433324443333 2333333331 1111 12222322222 235689999
Q ss_pred eCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCC
Q 038855 153 LTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGF 232 (260)
Q Consensus 153 l~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~ 232 (260)
+.++..++.++...++++.... -.-...+..++|++..++|.++...++.|...+++|||.+|.||||.+++.||.+|+
T Consensus 313 ~~sr~~~e~~~~~~~~~~~~~~-~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~ 391 (851)
T COG1205 313 FRSRKQVELLYLSPRRRLVREG-GKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGY 391 (851)
T ss_pred EehhhhhhhhhhchhHHHhhcc-hhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCC
Confidence 9999999999866655543221 111246899999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 038855 233 VKA 235 (260)
Q Consensus 233 ~~~ 235 (260)
|..
T Consensus 392 P~~ 394 (851)
T COG1205 392 PGV 394 (851)
T ss_pred CCc
Confidence 994
No 84
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.24 E-value=9.6e-11 Score=91.91 Aligned_cols=82 Identities=16% Similarity=0.334 Sum_probs=75.8
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCc
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGI 224 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V 224 (260)
..+++|||+++...++.+++.|.+ ....+..+||+++..+|..+++.|..+..+||++|+.++.|+|+|++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~ 97 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRK---------PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNV 97 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHh---------cCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhC
Confidence 478999999999999999999987 37789999999999999999999999999999999999999999999
Q ss_pred eEEEeCCCccc
Q 038855 225 KYVIDPGFVKA 235 (260)
Q Consensus 225 ~~VId~g~~~~ 235 (260)
++||-.+.+..
T Consensus 98 ~~vi~~~~~~~ 108 (131)
T cd00079 98 SVVINYDLPWS 108 (131)
T ss_pred CEEEEeCCCCC
Confidence 99998887554
No 85
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.22 E-value=2.3e-10 Score=116.79 Aligned_cols=69 Identities=16% Similarity=0.220 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCH--HHHHHHhcccCCCCeEEEEecCcccccCCCCCceEE--EeCCCc
Q 038855 158 EIESVERLVQERLLQLPEASRKLVTVPIFSSLPS--EQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYV--IDPGFV 233 (260)
Q Consensus 158 ~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~--~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~V--Id~g~~ 233 (260)
.++.+++.|++.+ .+.++..+|+++++ +++.++++.|++|+..|||+|+++++|+|+|+|++| +|...+
T Consensus 438 G~e~~~e~l~~~f-------p~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~ 510 (679)
T PRK05580 438 GTERLEEELAELF-------PEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLG 510 (679)
T ss_pred cHHHHHHHHHHhC-------CCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchh
Confidence 5677778887754 36789999999975 578999999999999999999999999999999999 566544
No 86
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.22 E-value=1.1e-10 Score=119.80 Aligned_cols=75 Identities=13% Similarity=0.216 Sum_probs=63.7
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCC-CeEEEEecCcccccCCCCC
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAG-FRKVILATNIAETSVTIPG 223 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g-~~kVlvaTdiae~gidIp~ 223 (260)
.+.++|||+.....++.+++.|. +..+||++++.+|+++++.|+.| ..++||+|+++.+|||+|+
T Consensus 495 ~g~kiLVF~~~~~~l~~~a~~L~--------------~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~ 560 (732)
T TIGR00603 495 RGDKIIVFSDNVFALKEYAIKLG--------------KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPE 560 (732)
T ss_pred cCCeEEEEeCCHHHHHHHHHHcC--------------CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCC
Confidence 56799999999887776655541 24589999999999999999865 7799999999999999999
Q ss_pred ceEEEeCCCc
Q 038855 224 IKYVIDPGFV 233 (260)
Q Consensus 224 V~~VId~g~~ 233 (260)
+++||....+
T Consensus 561 a~vvI~~s~~ 570 (732)
T TIGR00603 561 ANVLIQISSH 570 (732)
T ss_pred CCEEEEeCCC
Confidence 9999986544
No 87
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.20 E-value=8.6e-11 Score=121.27 Aligned_cols=147 Identities=20% Similarity=0.220 Sum_probs=104.6
Q ss_pred eEEEEeccCC--HHHHHhhhCCCcEEEecCceeeeeEEEeeCCCcchHHHHHHHHHHHHhh--cCCCCEEEEeCCHHHHH
Q 038855 85 KLIIMSASLD--ARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDFLDATLITIFQVHLD--EAPGDILVFLTGQEEIE 160 (260)
Q Consensus 85 qlil~SATl~--~~~~~~~~~~~~~v~v~~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~g~iLVFl~~~~~ve 160 (260)
++..||.|.. ...|.+.+ +-.++.+|.. .|+.-.-.+...-.-...+..++...... ..+.++||||++.+.++
T Consensus 377 kl~GmTGTa~~e~~Ef~~iY-~l~vv~IPtn-kp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se 454 (796)
T PRK12906 377 KLSGMTGTAKTEEEEFREIY-NMEVITIPTN-RPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSE 454 (796)
T ss_pred hhhccCCCCHHHHHHHHHHh-CCCEEEcCCC-CCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHH
Confidence 5788888883 34455544 3557777764 23221111110000012233334333321 24679999999999999
Q ss_pred HHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCC---CCce-----EEEeCCC
Q 038855 161 SVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTI---PGIK-----YVIDPGF 232 (260)
Q Consensus 161 ~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidI---p~V~-----~VId~g~ 232 (260)
.+.+.|.+ .+++...+|+.+.+.++..+..++++|. |+||||+|+||+|| ++|. |||++.+
T Consensus 455 ~ls~~L~~---------~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~ 523 (796)
T PRK12906 455 RLSHLLDE---------AGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTER 523 (796)
T ss_pred HHHHHHHH---------CCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeec
Confidence 99999998 4899999999999999998888888776 99999999999999 5999 9999999
Q ss_pred ccc-eeeecCCCc
Q 038855 233 VKA-RSYDPVKGM 244 (260)
Q Consensus 233 ~~~-~~yd~~~g~ 244 (260)
|.. +.|.+..|.
T Consensus 524 pes~ri~~Ql~GR 536 (796)
T PRK12906 524 HESRRIDNQLRGR 536 (796)
T ss_pred CCcHHHHHHHhhh
Confidence 987 567776664
No 88
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.20 E-value=1.1e-10 Score=119.80 Aligned_cols=146 Identities=22% Similarity=0.190 Sum_probs=106.1
Q ss_pred eEEEEeccCC--HHHHHhhhCCCcEEEecCceeeeeEEEee----CCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHH
Q 038855 85 KLIIMSASLD--ARGFSEYFGCAKAVHVQGRQFPVEILYTL----YPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEE 158 (260)
Q Consensus 85 qlil~SATl~--~~~~~~~~~~~~~v~v~~~~~~v~~~~~~----~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ 158 (260)
++..||.|.. .+.|.+.++ -.++.+|... |+.-.-.. ......+.+....+...+. .+-++||||++.+.
T Consensus 342 kl~GmTGTa~te~~E~~~iY~-l~vv~IPtnk-p~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~--~grpvLV~t~si~~ 417 (745)
T TIGR00963 342 KLSGMTGTAKTEEEEFEKIYN-LEVVVVPTNR-PVIRKDLSDLVYKTEEEKWKAVVDEIKERHA--KGQPVLVGTTSVEK 417 (745)
T ss_pred hhhccCCCcHHHHHHHHHHhC-CCEEEeCCCC-CeeeeeCCCeEEcCHHHHHHHHHHHHHHHHh--cCCCEEEEeCcHHH
Confidence 4677888873 344555443 4566676542 22111110 0112234444444444443 36789999999999
Q ss_pred HHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCC-------ceEEEeCC
Q 038855 159 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPG-------IKYVIDPG 231 (260)
Q Consensus 159 ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~-------V~~VId~g 231 (260)
++.+.+.|.+ .+++...||+. +.+|+..+..++.+.-.|+||||+|+||+||+. .-|||++.
T Consensus 418 se~ls~~L~~---------~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~ 486 (745)
T TIGR00963 418 SELLSNLLKE---------RGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTE 486 (745)
T ss_pred HHHHHHHHHH---------cCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecC
Confidence 9999999998 48999999998 888999999999899999999999999999998 45999999
Q ss_pred Cccc-eeeecCCCce
Q 038855 232 FVKA-RSYDPVKGME 245 (260)
Q Consensus 232 ~~~~-~~yd~~~g~~ 245 (260)
+|.. +.|+++.|.+
T Consensus 487 ~p~s~ri~~q~~GRt 501 (745)
T TIGR00963 487 RHESRRIDNQLRGRS 501 (745)
T ss_pred CCCcHHHHHHHhccc
Confidence 9988 5788776653
No 89
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.18 E-value=5.4e-10 Score=105.86 Aligned_cols=134 Identities=17% Similarity=0.245 Sum_probs=88.3
Q ss_pred eEEEEeccCCHHHHHhhh-CCCcEEEecCce----eeeeEEEeeCCCcchH-----HHHHHHHHHHHhhcCCCCEEEEeC
Q 038855 85 KLIIMSASLDARGFSEYF-GCAKAVHVQGRQ----FPVEILYTLYPEPDFL-----DATLITIFQVHLDEAPGDILVFLT 154 (260)
Q Consensus 85 qlil~SATl~~~~~~~~~-~~~~~v~v~~~~----~~v~~~~~~~~~~~~~-----~~~~~~l~~i~~~~~~g~iLVFl~ 154 (260)
-+|++|||..-....+.. |.-..+.++.+- .|+..+.....-...+ .-++...++-+.. ...++|||+|
T Consensus 235 ~~IylTATp~k~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~-~~~P~liF~p 313 (441)
T COG4098 235 ATIYLTATPTKKLERKILKGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRK-TGRPVLIFFP 313 (441)
T ss_pred ceEEEecCChHHHHHHhhhCCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHh-cCCcEEEEec
Confidence 489999997544444443 233346666542 2333322221111111 1122223332222 2578999999
Q ss_pred CHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEE
Q 038855 155 GQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVI 228 (260)
Q Consensus 155 ~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VI 228 (260)
+.+..+++++.|++.+ ....++..||. ...|.+-.+.|++|+.++|++|-|.|||+|+|+|+.+|
T Consensus 314 ~I~~~eq~a~~lk~~~-------~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~V 378 (441)
T COG4098 314 EIETMEQVAAALKKKL-------PKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFV 378 (441)
T ss_pred chHHHHHHHHHHHhhC-------Cccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEE
Confidence 9999999999997754 35566778853 34577778999999999999999999999999999866
No 90
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.14 E-value=9.2e-11 Score=123.48 Aligned_cols=104 Identities=11% Similarity=0.060 Sum_probs=90.4
Q ss_pred HHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCC--CCeEEEE
Q 038855 133 TLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAA--GFRKVIL 210 (260)
Q Consensus 133 ~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~--g~~kVlv 210 (260)
++..+..+.....+.++||||++++.+..+++.|+.. .++.++.+||++++.+|.++++.|+. |..+|||
T Consensus 480 Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~--------~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLI 551 (956)
T PRK04914 480 RVEWLIDFLKSHRSEKVLVICAKAATALQLEQALRER--------EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLL 551 (956)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc--------cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEE
Confidence 4445666666666789999999999999999999653 48999999999999999999999986 4689999
Q ss_pred ecCcccccCCCCCceEEEeCCCccce-eeecCCCc
Q 038855 211 ATNIAETSVTIPGIKYVIDPGFVKAR-SYDPVKGM 244 (260)
Q Consensus 211 aTdiae~gidIp~V~~VId~g~~~~~-~yd~~~g~ 244 (260)
||+++++|++++.+++||++++|..+ .|.++.|-
T Consensus 552 sTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR 586 (956)
T PRK04914 552 CSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGR 586 (956)
T ss_pred echhhccCCCcccccEEEEecCCCCHHHHHHHhcc
Confidence 99999999999999999999999986 57766654
No 91
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.13 E-value=2.4e-10 Score=119.96 Aligned_cols=146 Identities=17% Similarity=0.168 Sum_probs=104.7
Q ss_pred ceEEEEeccCCHHHHH---hhhC--CCcEEEecCceeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHH
Q 038855 84 LKLIIMSASLDARGFS---EYFG--CAKAVHVQGRQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEE 158 (260)
Q Consensus 84 ~qlil~SATl~~~~~~---~~~~--~~~~v~v~~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ 158 (260)
.-+|.++||...+.-. +-++ ++++. -..-.-|--.+.+.... + .+.....+..+-..+..+.+||+|.++.+
T Consensus 421 vP~iALTATAT~~v~~DIi~~L~l~~~~~~-~~sfnR~NL~yeV~~k~-~-~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ 497 (941)
T KOG0351|consen 421 VPFIALTATATERVREDVIRSLGLRNPELF-KSSFNRPNLKYEVSPKT-D-KDALLDILEESKLRHPDQSGIIYCLSRKE 497 (941)
T ss_pred CCeEEeehhccHHHHHHHHHHhCCCCccee-cccCCCCCceEEEEecc-C-ccchHHHHHHhhhcCCCCCeEEEeCCcch
Confidence 4589999998554433 3332 33321 11111122222222222 1 12233333344445556789999999999
Q ss_pred HHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccce-e
Q 038855 159 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKAR-S 237 (260)
Q Consensus 159 ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~-~ 237 (260)
|+.+...|+.. ++....+|++|+..+|..|-..|-.++.+|++||=...-|||-|||+.||++++|+.. .
T Consensus 498 ce~vs~~L~~~---------~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~ 568 (941)
T KOG0351|consen 498 CEQVSAVLRSL---------GKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEG 568 (941)
T ss_pred HHHHHHHHHHh---------chhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHH
Confidence 99999999994 7899999999999999999999999999999999999999999999999999999985 4
Q ss_pred eecC
Q 038855 238 YDPV 241 (260)
Q Consensus 238 yd~~ 241 (260)
|.-.
T Consensus 569 YYQE 572 (941)
T KOG0351|consen 569 YYQE 572 (941)
T ss_pred HHHh
Confidence 5433
No 92
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.12 E-value=5.6e-10 Score=113.56 Aligned_cols=91 Identities=15% Similarity=0.196 Sum_probs=80.7
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCc
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGI 224 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V 224 (260)
...++|||++|+..++.+.+.|.+ .++.+..+||++++.+|.++++.|+.|...|+|||+++++|+|+|++
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~---------~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v 515 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKE---------LGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEV 515 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhh---------cceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCC
Confidence 367899999999999999999988 48999999999999999999999999999999999999999999999
Q ss_pred eEEEeCCC-----ccc-eeeecCCCc
Q 038855 225 KYVIDPGF-----VKA-RSYDPVKGM 244 (260)
Q Consensus 225 ~~VId~g~-----~~~-~~yd~~~g~ 244 (260)
++||.++. |.. ..|-++.|.
T Consensus 516 ~lVii~d~eifG~~~~~~~yiqr~GR 541 (652)
T PRK05298 516 SLVAILDADKEGFLRSERSLIQTIGR 541 (652)
T ss_pred cEEEEeCCcccccCCCHHHHHHHhcc
Confidence 99998764 433 457666554
No 93
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.12 E-value=4.9e-10 Score=114.14 Aligned_cols=90 Identities=16% Similarity=0.238 Sum_probs=80.6
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCc
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGI 224 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V 224 (260)
.+.++|||++|+..++.+.+.|.+. ++.+..+||++++.+|.+++..|+.|...|+|||+++++|+|+|++
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~---------gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v 511 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKEL---------GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEV 511 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhh---------ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCC
Confidence 4678999999999999999999884 8899999999999999999999999999999999999999999999
Q ss_pred eEEEeCC-----Cccc-eeeecCCC
Q 038855 225 KYVIDPG-----FVKA-RSYDPVKG 243 (260)
Q Consensus 225 ~~VId~g-----~~~~-~~yd~~~g 243 (260)
++||.++ +|.. .+|-++.|
T Consensus 512 ~lVvi~DadifG~p~~~~~~iqriG 536 (655)
T TIGR00631 512 SLVAILDADKEGFLRSERSLIQTIG 536 (655)
T ss_pred cEEEEeCcccccCCCCHHHHHHHhc
Confidence 9999875 6654 45666555
No 94
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.06 E-value=3.2e-09 Score=111.04 Aligned_cols=193 Identities=16% Similarity=0.226 Sum_probs=133.9
Q ss_pred CCCCcccEEEEecCC----cCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCC
Q 038855 6 PYLSRYSVIIVDEAH----ERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKF 81 (260)
Q Consensus 6 ~~L~~~~~vIlDEah----er~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (260)
..++.+..|||||+| +|++-.+.+.+...++......
T Consensus 234 ~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs--------------------------------------- 274 (1230)
T KOG0952|consen 234 ALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQS--------------------------------------- 274 (1230)
T ss_pred hhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhh---------------------------------------
Confidence 356789999999999 3555444444444443333332
Q ss_pred CCceEEEEeccC-CHHHHHhhhCCCc---EEEecCc--eeeeeEEEeeCCCcch-------HHHHHHHHHHHHhhcCCCC
Q 038855 82 PPLKLIIMSASL-DARGFSEYFGCAK---AVHVQGR--QFPVEILYTLYPEPDF-------LDATLITIFQVHLDEAPGD 148 (260)
Q Consensus 82 ~~~qlil~SATl-~~~~~~~~~~~~~---~v~v~~~--~~~v~~~~~~~~~~~~-------~~~~~~~l~~i~~~~~~g~ 148 (260)
..+++.+|||+ +...++.|++-.+ +....++ .-|.++.++-++..+. -....+.+...+ ..+.+
T Consensus 275 -~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~--~~g~q 351 (1230)
T KOG0952|consen 275 -MIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFL--QEGHQ 351 (1230)
T ss_pred -heEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHH--HcCCe
Confidence 78999999999 7888899987532 3333333 3456666665554411 111222222222 23678
Q ss_pred EEEEeCCHHHHHHHHHHHHHHHhcCc-------cCCCC-------eEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCc
Q 038855 149 ILVFLTGQEEIESVERLVQERLLQLP-------EASRK-------LVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNI 214 (260)
Q Consensus 149 iLVFl~~~~~ve~v~~~L~~~l~~~~-------~~~~~-------~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdi 214 (260)
++|||+++.+....++.|.+...... ....+ ......|++|..+.|.-+..-|+.|..+|++||..
T Consensus 352 VlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaT 431 (1230)
T KOG0952|consen 352 VLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTAT 431 (1230)
T ss_pred EEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecce
Confidence 99999999999999999988765321 11112 45778999999999999999999999999999999
Q ss_pred ccccCCCCCceEEEeCCCccceeeecCCCc
Q 038855 215 AETSVTIPGIKYVIDPGFVKARSYDPVKGM 244 (260)
Q Consensus 215 ae~gidIp~V~~VId~g~~~~~~yd~~~g~ 244 (260)
.+-|+..|.=-.+|= | .+.||+.+|.
T Consensus 432 LAwGVNLPA~aViIK-G---T~~ydsskg~ 457 (1230)
T KOG0952|consen 432 LAWGVNLPAYAVIIK-G---TQVYDSSKGS 457 (1230)
T ss_pred eeeccCCcceEEEec-C---CcccccccCc
Confidence 999999998655552 2 4679988874
No 95
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.03 E-value=2.3e-09 Score=113.45 Aligned_cols=165 Identities=18% Similarity=0.236 Sum_probs=123.9
Q ss_pred cCCCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCC
Q 038855 4 LDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPP 83 (260)
Q Consensus 4 ~d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (260)
.|-.+.++..+|+||=|.=++.. ..-||.+ +. +
T Consensus 710 kdv~FkdLGLlIIDEEqRFGVk~---KEkLK~L---r~-----------------------------------------~ 742 (1139)
T COG1197 710 KDVKFKDLGLLIIDEEQRFGVKH---KEKLKEL---RA-----------------------------------------N 742 (1139)
T ss_pred CCcEEecCCeEEEechhhcCccH---HHHHHHH---hc-----------------------------------------c
Confidence 35667899999999998523322 2234433 33 5
Q ss_pred ceEEEEeccCCHHHHHhhhCC---CcEEEe-cCceeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHH
Q 038855 84 LKLIIMSASLDARGFSEYFGC---AKAVHV-QGRQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEI 159 (260)
Q Consensus 84 ~qlil~SATl~~~~~~~~~~~---~~~v~v-~~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~v 159 (260)
..++-||||.-++.+.=-+-+ -.++.- |...+||+++..++...- ...++..-+ ..+|++-.-.|..+.+
T Consensus 743 VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~----ireAI~REl--~RgGQvfYv~NrV~~I 816 (1139)
T COG1197 743 VDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLL----IREAILREL--LRGGQVFYVHNRVESI 816 (1139)
T ss_pred CcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHH----HHHHHHHHH--hcCCEEEEEecchhhH
Confidence 669999999977776643322 223333 445689999877654432 222233222 2479999999999999
Q ss_pred HHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEE
Q 038855 160 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVI 228 (260)
Q Consensus 160 e~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VI 228 (260)
+.+++.|+++. +..++...||-|+.++-+++|..|-+|...|||||-|.|+|||||++...|
T Consensus 817 e~~~~~L~~LV-------PEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiI 878 (1139)
T COG1197 817 EKKAERLRELV-------PEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTII 878 (1139)
T ss_pred HHHHHHHHHhC-------CceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEE
Confidence 99999999986 477899999999999999999999999999999999999999999997766
No 96
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.99 E-value=1.5e-09 Score=113.75 Aligned_cols=147 Identities=16% Similarity=0.163 Sum_probs=101.0
Q ss_pred eEEEEeccCC--HHHHHhhhCCCcEEEecCceeeeeEEEeeCCCcchHHHHHHHHHHHHhh--cCCCCEEEEeCCHHHHH
Q 038855 85 KLIIMSASLD--ARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDFLDATLITIFQVHLD--EAPGDILVFLTGQEEIE 160 (260)
Q Consensus 85 qlil~SATl~--~~~~~~~~~~~~~v~v~~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~g~iLVFl~~~~~ve 160 (260)
|+-.|+.|.. ...|.+.++ -.++.+|... |+.-.-..+.--.-...+..++...... ..+.++|||+++.+.++
T Consensus 535 kLaGMTGTA~te~~Ef~~iY~-L~Vv~IPTnr-P~~R~D~~d~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE 612 (1025)
T PRK12900 535 KLAGMTGTAETEASEFFEIYK-LDVVVIPTNK-PIVRKDMDDLVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSE 612 (1025)
T ss_pred hhcccCCCChhHHHHHHHHhC-CcEEECCCCC-CcceecCCCeEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHH
Confidence 5778888873 334555443 4566666532 3221111100000011233344433321 24679999999999999
Q ss_pred HHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCC---CceE-----EEeCCC
Q 038855 161 SVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIP---GIKY-----VIDPGF 232 (260)
Q Consensus 161 ~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp---~V~~-----VId~g~ 232 (260)
.+.+.|.. .+++...||+ .+.+|+..+.+++.+...|+||||+|+||+||+ +|.. ||++.+
T Consensus 613 ~Ls~~L~~---------~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgter 681 (1025)
T PRK12900 613 TLSRMLRA---------KRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSER 681 (1025)
T ss_pred HHHHHHHH---------cCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCC
Confidence 99999998 4899999997 688899999999989999999999999999999 6654 488888
Q ss_pred ccc-eeeecCCCc
Q 038855 233 VKA-RSYDPVKGM 244 (260)
Q Consensus 233 ~~~-~~yd~~~g~ 244 (260)
+.. +.|.++.|.
T Consensus 682 hes~Rid~Ql~GR 694 (1025)
T PRK12900 682 HESRRIDRQLRGR 694 (1025)
T ss_pred CchHHHHHHHhhh
Confidence 876 567776664
No 97
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.96 E-value=3.5e-09 Score=109.04 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=63.0
Q ss_pred cCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhccc----CCCCeEEEEecCcccccC
Q 038855 144 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPA----AAGFRKVILATNIAETSV 219 (260)
Q Consensus 144 ~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~----~~g~~kVlvaTdiae~gi 219 (260)
...++++|.+||...+..+++.|+.. +..++.+||.+....|.+..+.. +.....|+|||.+.|.|+
T Consensus 438 ~~~~kvlvI~NTV~~Aie~Y~~Lk~~---------~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagv 508 (733)
T COG1203 438 KEGKKVLVIVNTVDRAIELYEKLKEK---------GPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGV 508 (733)
T ss_pred ccCCcEEEEEecHHHHHHHHHHHHhc---------CCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEe
Confidence 34689999999999999999999984 33799999999999988876632 345778999999999999
Q ss_pred CCCCceEEE
Q 038855 220 TIPGIKYVI 228 (260)
Q Consensus 220 dIp~V~~VI 228 (260)
||. .+.+|
T Consensus 509 Did-fd~mI 516 (733)
T COG1203 509 DID-FDVLI 516 (733)
T ss_pred ccc-cCeee
Confidence 994 66666
No 98
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.95 E-value=5.5e-09 Score=110.83 Aligned_cols=158 Identities=18% Similarity=0.241 Sum_probs=113.6
Q ss_pred CceEEEEeccC-CHHHHHhhhCCCc-EEEe---cCceeeeeEEEeeCCCcchHHH---HHHHHH-HHHhhcCCCCEEEEe
Q 038855 83 PLKLIIMSASL-DARGFSEYFGCAK-AVHV---QGRQFPVEILYTLYPEPDFLDA---TLITIF-QVHLDEAPGDILVFL 153 (260)
Q Consensus 83 ~~qlil~SATl-~~~~~~~~~~~~~-~v~v---~~~~~~v~~~~~~~~~~~~~~~---~~~~l~-~i~~~~~~g~iLVFl 153 (260)
..+++.+|||+ +-.....|+++.+ -+.. .=+.-|+++.|+.....+-+.. .-+..+ ++...-..+++|||+
T Consensus 474 ~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFV 553 (1674)
T KOG0951|consen 474 GSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFV 553 (1674)
T ss_pred CceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 68899999999 5556666665433 1222 2234578888887665543332 111122 233333458999999
Q ss_pred CCHHHHHHHHHHHHHHH----------hcCc-------------cC-----CCCeEEEEecCCCCHHHHHHHhcccCCCC
Q 038855 154 TGQEEIESVERLVQERL----------LQLP-------------EA-----SRKLVTVPIFSSLPSEQQMKVFAPAAAGF 205 (260)
Q Consensus 154 ~~~~~ve~v~~~L~~~l----------~~~~-------------~~-----~~~~~~~~lh~~l~~~~r~~v~~~~~~g~ 205 (260)
.++.+..+.++.++..+ .... .+ .-.+.++.+|++|+..+|.-+..-|+.|.
T Consensus 554 HsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~ 633 (1674)
T KOG0951|consen 554 HSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGH 633 (1674)
T ss_pred EechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCc
Confidence 99999999999998333 1100 00 02567999999999999999999999999
Q ss_pred eEEEEecCcccccCCCCCceEEEeCCCccceeeecCCCc
Q 038855 206 RKVILATNIAETSVTIPGIKYVIDPGFVKARSYDPVKGM 244 (260)
Q Consensus 206 ~kVlvaTdiae~gidIp~V~~VId~g~~~~~~yd~~~g~ 244 (260)
++|+++|-..|.|+..|.=+.+|-- ..+|||.+|.
T Consensus 634 iqvlvstatlawgvnlpahtViikg----tqvy~pekg~ 668 (1674)
T KOG0951|consen 634 IQVLVSTATLAWGVNLPAHTVIIKG----TQVYDPEKGR 668 (1674)
T ss_pred eeEEEeehhhhhhcCCCcceEEecC----ccccCcccCc
Confidence 9999999999999999998877743 4689999984
No 99
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.95 E-value=3.6e-08 Score=105.72 Aligned_cols=90 Identities=14% Similarity=0.220 Sum_probs=70.1
Q ss_pred cCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCe-EEEEecCcccccCCCC
Q 038855 144 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFR-KVILATNIAETSVTIP 222 (260)
Q Consensus 144 ~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~-kVlvaTdiae~gidIp 222 (260)
..++++||||.+.+.++.+.+.|.+.....-.......+..++|+.+. +.++++.|+++.. +|+|+++++.+|+|+|
T Consensus 696 ~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~~--~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP 773 (1123)
T PRK11448 696 TGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSIDK--PDQLIRRFKNERLPNIVVTVDLLTTGIDVP 773 (1123)
T ss_pred cCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCccc--hHHHHHHHhCCCCCeEEEEecccccCCCcc
Confidence 346899999999999999999998764321111123356678998864 5678999998765 8999999999999999
Q ss_pred CceEEEeCCCccc
Q 038855 223 GIKYVIDPGFVKA 235 (260)
Q Consensus 223 ~V~~VId~g~~~~ 235 (260)
.|.+||-.-.++.
T Consensus 774 ~v~~vVf~rpvkS 786 (1123)
T PRK11448 774 SICNLVFLRRVRS 786 (1123)
T ss_pred cccEEEEecCCCC
Confidence 9999998766654
No 100
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=98.94 E-value=1e-09 Score=80.65 Aligned_cols=58 Identities=16% Similarity=0.229 Sum_probs=55.4
Q ss_pred CCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc
Q 038855 178 RKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA 235 (260)
Q Consensus 178 ~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~ 235 (260)
.++.+..+||++++.+|.++++.|..+..+||+||++++.|+|+|++++||.++.+..
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~ 63 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWS 63 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESS
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCC
Confidence 4899999999999999999999999999999999999999999999999999998655
No 101
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=98.90 E-value=2.7e-09 Score=77.03 Aligned_cols=58 Identities=22% Similarity=0.358 Sum_probs=54.2
Q ss_pred CCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc
Q 038855 178 RKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA 235 (260)
Q Consensus 178 ~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~ 235 (260)
.++.+..+||+++.++|.++++.|..+..+||++|++++.|+|+|++++||..+.+..
T Consensus 10 ~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~ 67 (82)
T smart00490 10 LGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWS 67 (82)
T ss_pred CCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCC
Confidence 3789999999999999999999999999999999999999999999999999988543
No 102
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=98.90 E-value=7.1e-09 Score=107.67 Aligned_cols=149 Identities=19% Similarity=0.231 Sum_probs=97.6
Q ss_pred ceEEEEeccC-CHHHHHhhhCCCcEEEecCceeeeeEEEeeCCC-cch-HHHHHHHHH----------------HHHhh-
Q 038855 84 LKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFPVEILYTLYPE-PDF-LDATLITIF----------------QVHLD- 143 (260)
Q Consensus 84 ~qlil~SATl-~~~~~~~~~~~~~~v~v~~~~~~v~~~~~~~~~-~~~-~~~~~~~l~----------------~i~~~- 143 (260)
+|+|.||||+ +...++.|+. +.+.+-.-+..|.+.+...... .+. -...+..+. .++..
T Consensus 378 ~~iIGMSATi~N~~lL~~~L~-A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet 456 (1008)
T KOG0950|consen 378 VQIIGMSATIPNNSLLQDWLD-AFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDEDPDHLVGLCTET 456 (1008)
T ss_pred eeEeeeecccCChHHHHHHhh-hhheecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCCCcceeeehhhh
Confidence 7899999999 7788888875 4444333333333322211100 000 001111111 11111
Q ss_pred cCCC-CEEEEeCCHHHHHHHHHHHHHHHhcCc----------------------cC-------CCCeEEEEecCCCCHHH
Q 038855 144 EAPG-DILVFLTGQEEIESVERLVQERLLQLP----------------------EA-------SRKLVTVPIFSSLPSEQ 193 (260)
Q Consensus 144 ~~~g-~iLVFl~~~~~ve~v~~~L~~~l~~~~----------------------~~-------~~~~~~~~lh~~l~~~~ 193 (260)
-..+ .+|||||++..||.++..+...+.+.. .. .-.+.++.+|++++.++
T Consensus 457 ~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eE 536 (1008)
T KOG0950|consen 457 APEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEE 536 (1008)
T ss_pred hhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccch
Confidence 1123 499999999999999977766554210 00 01456889999999999
Q ss_pred HHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCc
Q 038855 194 QMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFV 233 (260)
Q Consensus 194 r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~ 233 (260)
|..+-+.|++|-.+|+.||+..+.|+..|..+++|-.-+.
T Consensus 537 R~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~ 576 (1008)
T KOG0950|consen 537 REIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYV 576 (1008)
T ss_pred HHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCcc
Confidence 9999999999999999999999999999999999966443
No 103
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=98.87 E-value=1.2e-08 Score=105.92 Aligned_cols=123 Identities=21% Similarity=0.222 Sum_probs=86.8
Q ss_pred eEEEEeccCC--HHHHHhhhCCCcEEEecCceeeeeEEEeeC----CCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHH
Q 038855 85 KLIIMSASLD--ARGFSEYFGCAKAVHVQGRQFPVEILYTLY----PEPDFLDATLITIFQVHLDEAPGDILVFLTGQEE 158 (260)
Q Consensus 85 qlil~SATl~--~~~~~~~~~~~~~v~v~~~~~~v~~~~~~~----~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ 158 (260)
++..||.|.. .+.|.+.+ +-.++.+|... |+.-.-.++ ...+.+.+....+...+ ..+.++||||++.+.
T Consensus 367 kl~GmTGTa~te~~E~~~iY-~l~vv~IPtnk-p~~r~d~~d~i~~t~~~K~~aI~~~I~~~~--~~grpVLIft~Si~~ 442 (830)
T PRK12904 367 KLAGMTGTADTEAEEFREIY-NLDVVVIPTNR-PMIRIDHPDLIYKTEKEKFDAVVEDIKERH--KKGQPVLVGTVSIEK 442 (830)
T ss_pred hhcccCCCcHHHHHHHHHHh-CCCEEEcCCCC-CeeeeeCCCeEEECHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHH
Confidence 4778888873 33455544 35677777642 322111110 11223333333333333 346689999999999
Q ss_pred HHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCC
Q 038855 159 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIP 222 (260)
Q Consensus 159 ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp 222 (260)
++.+.+.|.+ .+++...||+. +.+|+..+..|+.+...|+||||+|+||+||+
T Consensus 443 se~Ls~~L~~---------~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~ 495 (830)
T PRK12904 443 SELLSKLLKK---------AGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIK 495 (830)
T ss_pred HHHHHHHHHH---------CCCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCcc
Confidence 9999999998 48999999995 78899999999999999999999999999995
No 104
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=98.82 E-value=2.9e-08 Score=103.70 Aligned_cols=123 Identities=17% Similarity=0.197 Sum_probs=89.9
Q ss_pred eEEEEeccCC--HHHHHhhhCCCcEEEecCceeeeeEE----EeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHH
Q 038855 85 KLIIMSASLD--ARGFSEYFGCAKAVHVQGRQFPVEIL----YTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEE 158 (260)
Q Consensus 85 qlil~SATl~--~~~~~~~~~~~~~v~v~~~~~~v~~~----~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ 158 (260)
|+-.|+.|.. ...|.+.++ -.++.+|.. -|+.-. .+.......+.+....+...+. .+.++|||+++.+.
T Consensus 381 kLsGMTGTa~te~~Ef~~iY~-l~Vv~IPtn-kp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~--~g~PVLVgt~Sie~ 456 (896)
T PRK13104 381 KLSGMTGTADTEAYEFQQIYN-LEVVVIPTN-RSMIRKDEADLVYLTQADKFQAIIEDVRECGV--RKQPVLVGTVSIEA 456 (896)
T ss_pred hhccCCCCChhHHHHHHHHhC-CCEEECCCC-CCcceecCCCeEEcCHHHHHHHHHHHHHHHHh--CCCCEEEEeCcHHH
Confidence 4677888873 344555443 456777654 232211 1111223344555555555554 35689999999999
Q ss_pred HHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCC
Q 038855 159 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIP 222 (260)
Q Consensus 159 ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp 222 (260)
++.+.+.|.+ .+++...||+.+.+.++..+.+++++|. |+||||+|+||+||-
T Consensus 457 sE~ls~~L~~---------~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~ 509 (896)
T PRK13104 457 SEFLSQLLKK---------ENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIV 509 (896)
T ss_pred HHHHHHHHHH---------cCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCccee
Confidence 9999999998 5999999999999999999999999994 999999999999994
No 105
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=98.81 E-value=6.1e-08 Score=94.47 Aligned_cols=77 Identities=18% Similarity=0.274 Sum_probs=69.6
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCc
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGI 224 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V 224 (260)
...+++||+...+.+..++..+.. .+. +..+.|+.++.+|..+++.|+.|..++|+++.++.-|+|+|++
T Consensus 282 ~~~~~lif~~~~~~a~~i~~~~~~---------~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~ 351 (442)
T COG1061 282 RGDKTLIFASDVEHAYEIAKLFLA---------PGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDA 351 (442)
T ss_pred CCCcEEEEeccHHHHHHHHHHhcC---------CCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCC
Confidence 366999999999999999888876 345 8899999999999999999999899999999999999999999
Q ss_pred eEEEeCC
Q 038855 225 KYVIDPG 231 (260)
Q Consensus 225 ~~VId~g 231 (260)
+++|=..
T Consensus 352 ~~~i~~~ 358 (442)
T COG1061 352 DVLIILR 358 (442)
T ss_pred cEEEEeC
Confidence 9998543
No 106
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=98.80 E-value=3.1e-08 Score=95.30 Aligned_cols=97 Identities=20% Similarity=0.237 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHh-hcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEE
Q 038855 131 DATLITIFQVHL-DEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVI 209 (260)
Q Consensus 131 ~~~~~~l~~i~~-~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVl 209 (260)
+...+.+..+.+ +..+...+|+|=++.++|.|+..|+.. ++..-.+|..|.++.+..+-+.+-+|+..|+
T Consensus 301 dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~---------gi~a~~yha~lep~dks~~hq~w~a~eiqvi 371 (695)
T KOG0353|consen 301 DDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNH---------GIHAGAYHANLEPEDKSGAHQGWIAGEIQVI 371 (695)
T ss_pred HHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhc---------CccccccccccCccccccccccccccceEEE
Confidence 344444444443 334556799999999999999999984 9999999999999999999999999999999
Q ss_pred EecCcccccCCCCCceEEEeCCCccce
Q 038855 210 LATNIAETSVTIPGIKYVIDPGFVKAR 236 (260)
Q Consensus 210 vaTdiae~gidIp~V~~VId~g~~~~~ 236 (260)
|||=...-|||-|+|++||+..+|+..
T Consensus 372 vatvafgmgidkpdvrfvihhsl~ksi 398 (695)
T KOG0353|consen 372 VATVAFGMGIDKPDVRFVIHHSLPKSI 398 (695)
T ss_pred EEEeeecccCCCCCeeEEEecccchhH
Confidence 999999999999999999999999974
No 107
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=98.72 E-value=2.2e-08 Score=97.33 Aligned_cols=81 Identities=19% Similarity=0.184 Sum_probs=76.3
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCce
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIK 225 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~ 225 (260)
.|..||+|.|+++||.++-.|.. .++....+|.+|...+|-.|-+.+-++...||+||+-..-|+|-|+|+
T Consensus 255 ~GCGIVYCRTR~~cEq~AI~l~~---------~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VR 325 (641)
T KOG0352|consen 255 TGCGIVYCRTRNECEQVAIMLEI---------AGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVR 325 (641)
T ss_pred CcceEEEeccHHHHHHHHHHhhh---------cCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCccee
Confidence 46789999999999999999988 599999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCccc
Q 038855 226 YVIDPGFVKA 235 (260)
Q Consensus 226 ~VId~g~~~~ 235 (260)
+||+-..+..
T Consensus 326 FViHW~~~qn 335 (641)
T KOG0352|consen 326 FVIHWSPSQN 335 (641)
T ss_pred EEEecCchhh
Confidence 9999887775
No 108
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.72 E-value=8e-08 Score=100.36 Aligned_cols=123 Identities=21% Similarity=0.193 Sum_probs=89.5
Q ss_pred eEEEEeccCC--HHHHHhhhCCCcEEEecCceeeeeEEEe----eCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHH
Q 038855 85 KLIIMSASLD--ARGFSEYFGCAKAVHVQGRQFPVEILYT----LYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEE 158 (260)
Q Consensus 85 qlil~SATl~--~~~~~~~~~~~~~v~v~~~~~~v~~~~~----~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ 158 (260)
++..|+.|.. ...|.+.+ +-.++.+|... |+.-.-. .......+.+.+..+..++.. +-++|||+++.+.
T Consensus 386 kL~GMTGTa~te~~Ef~~iY-~l~Vv~IPTnk-p~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~--GrpVLV~t~sv~~ 461 (908)
T PRK13107 386 KLAGMTGTADTEAFEFQHIY-GLDTVVVPTNR-PMVRKDMADLVYLTADEKYQAIIKDIKDCRER--GQPVLVGTVSIEQ 461 (908)
T ss_pred HhhcccCCChHHHHHHHHHh-CCCEEECCCCC-CccceeCCCcEEeCHHHHHHHHHHHHHHHHHc--CCCEEEEeCcHHH
Confidence 4667788873 23344433 34567776542 2211100 011233455666666666653 5689999999999
Q ss_pred HHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCC
Q 038855 159 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIP 222 (260)
Q Consensus 159 ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp 222 (260)
.+.+.+.|.+ .+++...||+.+.+.++..+.+++++|. |+||||+|.||+||.
T Consensus 462 se~ls~~L~~---------~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIk 514 (908)
T PRK13107 462 SELLARLMVK---------EKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIV 514 (908)
T ss_pred HHHHHHHHHH---------CCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCccee
Confidence 9999999998 4999999999999999999999999998 999999999999994
No 109
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.62 E-value=9.1e-09 Score=94.70 Aligned_cols=111 Identities=12% Similarity=0.210 Sum_probs=71.6
Q ss_pred CceEEEEeccCC--HHHHH-hhhCCCcEEEecCc----eeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCC
Q 038855 83 PLKLIIMSASLD--ARGFS-EYFGCAKAVHVQGR----QFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTG 155 (260)
Q Consensus 83 ~~qlil~SATl~--~~~~~-~~~~~~~~v~v~~~----~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~ 155 (260)
..|+++||||++ .+... +|+.++--+.+... .+-+.++|+.-.+.. +-..+..+.......+++||+.+
T Consensus 217 ~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~e----KNrkl~dLLd~LeFNQVvIFvKs 292 (387)
T KOG0329|consen 217 EKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENE----KNRKLNDLLDVLEFNQVVIFVKS 292 (387)
T ss_pred cceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhh----hhhhhhhhhhhhhhcceeEeeeh
Confidence 678999999994 44444 56666544444322 133456666543322 22223334434445678999876
Q ss_pred HHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc
Q 038855 156 QEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA 235 (260)
Q Consensus 156 ~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~ 235 (260)
...+. | .++ ++|||+..||+||..|..|+|+++|..
T Consensus 293 v~Rl~----------------------------------------f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~ 328 (387)
T KOG0329|consen 293 VQRLS----------------------------------------F---QKR-LVATDLFGRGMDIERVNIVFNYDMPED 328 (387)
T ss_pred hhhhh----------------------------------------h---hhh-hHHhhhhccccCcccceeeeccCCCCC
Confidence 65410 1 123 999999999999999999999999998
Q ss_pred e-eeecC
Q 038855 236 R-SYDPV 241 (260)
Q Consensus 236 ~-~yd~~ 241 (260)
. .|-++
T Consensus 329 ~DtYlHr 335 (387)
T KOG0329|consen 329 SDTYLHR 335 (387)
T ss_pred chHHHHH
Confidence 5 57664
No 110
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=98.60 E-value=1.7e-07 Score=96.13 Aligned_cols=97 Identities=13% Similarity=0.179 Sum_probs=74.8
Q ss_pred HHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEe--------cCCCCHHHHHHHhcccCCC
Q 038855 133 TLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPI--------FSSLPSEQQMKVFAPAAAG 204 (260)
Q Consensus 133 ~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~l--------h~~l~~~~r~~v~~~~~~g 204 (260)
+...+...........++||+.+++.+..+.++|.+.... +++...+ ..+|+|.+|+++++.|++|
T Consensus 400 l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~------~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G 473 (746)
T KOG0354|consen 400 LVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHEL------GIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDG 473 (746)
T ss_pred HHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhc------ccccceeeeccccccccccCHHHHHHHHHHHhCC
Confidence 3334444444444568999999999999999999863221 1111111 1589999999999999999
Q ss_pred CeEEEEecCcccccCCCCCceEEEeCCCccc
Q 038855 205 FRKVILATNIAETSVTIPGIKYVIDPGFVKA 235 (260)
Q Consensus 205 ~~kVlvaTdiae~gidIp~V~~VId~g~~~~ 235 (260)
..+|||||.|||=|+|||.++.||-++....
T Consensus 474 ~~NvLVATSV~EEGLDI~ec~lVIcYd~~sn 504 (746)
T KOG0354|consen 474 EINVLVATSVAEEGLDIGECNLVICYDYSSN 504 (746)
T ss_pred CccEEEEecchhccCCcccccEEEEecCCcc
Confidence 9999999999999999999999998887653
No 111
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.33 E-value=4.1e-06 Score=88.97 Aligned_cols=181 Identities=18% Similarity=0.211 Sum_probs=119.5
Q ss_pred CCCCCcccEEEEecCCc-CCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCC
Q 038855 5 DPYLSRYSVIIVDEAHE-RTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPP 83 (260)
Q Consensus 5 d~~L~~~~~vIlDEahe-r~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (260)
...+..+.+||+||+|- +..+-++..... +...+. .
T Consensus 224 ~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~--Ii~lP~-----------------------------------------~ 260 (1041)
T COG4581 224 SESLRDIEWVVFDEVHYIGDRERGVVWEEV--IILLPD-----------------------------------------H 260 (1041)
T ss_pred cccccccceEEEEeeeeccccccchhHHHH--HHhcCC-----------------------------------------C
Confidence 36788999999999995 222223333222 223333 6
Q ss_pred ceEEEEeccC-CHHHHHhhhC-----CCcEEEecCceeeeeEEEeeCCC--------cchHHHH----HHH---------
Q 038855 84 LKLIIMSASL-DARGFSEYFG-----CAKAVHVQGRQFPVEILYTLYPE--------PDFLDAT----LIT--------- 136 (260)
Q Consensus 84 ~qlil~SATl-~~~~~~~~~~-----~~~~v~v~~~~~~v~~~~~~~~~--------~~~~~~~----~~~--------- 136 (260)
.+++++|||+ ++..|.+|++ ++-++..+.+..|.++++..... .++.... ...
T Consensus 261 v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~ 340 (1041)
T COG4581 261 VRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVR 340 (1041)
T ss_pred CcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhcc
Confidence 7899999999 8999999996 33455556666777777654411 1111000 000
Q ss_pred -----------------------------HHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHH------------------
Q 038855 137 -----------------------------IFQVHLDEAPGDILVFLTGQEEIESVERLVQER------------------ 169 (260)
Q Consensus 137 -----------------------------l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~------------------ 169 (260)
+.........-++++|+=++..|+..+..+..+
T Consensus 341 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~ 420 (1041)
T COG4581 341 ETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDH 420 (1041)
T ss_pred ccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHH
Confidence 111111223457999999999999887776521
Q ss_pred -HhcCccCCCCe-------------EEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEE
Q 038855 170 -LLQLPEASRKL-------------VTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVI 228 (260)
Q Consensus 170 -l~~~~~~~~~~-------------~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VI 228 (260)
+.++......+ -+..+|++|=+..+..+-.-|..|..||++||.+.+-|+..|--+.|.
T Consensus 421 ~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~ 493 (1041)
T COG4581 421 AIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVF 493 (1041)
T ss_pred HHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceee
Confidence 11222222222 245899999999999999999999999999999999999998766554
No 112
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.30 E-value=6.3e-06 Score=86.36 Aligned_cols=144 Identities=17% Similarity=0.211 Sum_probs=94.1
Q ss_pred ceEEEEeccCC----HHHHHhhhCCCc--EEEecCceeee---eEEEeeC--C------CcchHHHHHHHHHHHHhhcCC
Q 038855 84 LKLIIMSASLD----ARGFSEYFGCAK--AVHVQGRQFPV---EILYTLY--P------EPDFLDATLITIFQVHLDEAP 146 (260)
Q Consensus 84 ~qlil~SATl~----~~~~~~~~~~~~--~v~v~~~~~~v---~~~~~~~--~------~~~~~~~~~~~l~~i~~~~~~ 146 (260)
..+|++|||+. .+.+.+.+|-.. ...+....|+. ...|+.. + ...+.......+..+... .+
T Consensus 596 ~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~-~~ 674 (850)
T TIGR01407 596 KSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAI-TS 674 (850)
T ss_pred CeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh-cC
Confidence 46899999995 345556565322 22222223431 1223321 1 123455556666666544 47
Q ss_pred CCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCce-
Q 038855 147 GDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIK- 225 (260)
Q Consensus 147 g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~- 225 (260)
|++|||+|+.+.++.++..|...+.. .++.+.. .+.. ..|.++++.|+.|...||++|+.+.+|||+|+..
T Consensus 675 g~~LVlftS~~~l~~v~~~L~~~~~~-----~~~~~l~--q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l 746 (850)
T TIGR01407 675 PKILVLFTSYEMLHMVYDMLNELPEF-----EGYEVLA--QGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGL 746 (850)
T ss_pred CCEEEEeCCHHHHHHHHHHHhhhccc-----cCceEEe--cCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCce
Confidence 89999999999999999999763210 2333332 2222 4678899999999999999999999999999766
Q ss_pred -EEEeCCCccce
Q 038855 226 -YVIDPGFVKAR 236 (260)
Q Consensus 226 -~VId~g~~~~~ 236 (260)
.||=+|+|...
T Consensus 747 ~~viI~~LPf~~ 758 (850)
T TIGR01407 747 VCLVIPRLPFAN 758 (850)
T ss_pred EEEEEeCCCCCC
Confidence 56668888753
No 113
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=98.27 E-value=4.7e-06 Score=87.36 Aligned_cols=88 Identities=17% Similarity=0.105 Sum_probs=69.7
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhc------------------CccCCC------------CeEEEEecCCCCHHHH
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQ------------------LPEASR------------KLVTVPIFSSLPSEQQ 194 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~------------------~~~~~~------------~~~~~~lh~~l~~~~r 194 (260)
+--+++||+=++..|+..+..|..+-.. ++...+ .-.++.+||++-+--.
T Consensus 566 ~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivK 645 (1248)
T KOG0947|consen 566 NLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVK 645 (1248)
T ss_pred ccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHH
Confidence 3457999999999999999888654210 111111 1147789999999988
Q ss_pred HHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCC
Q 038855 195 MKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGF 232 (260)
Q Consensus 195 ~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~ 232 (260)
+-|..-|..|..|||+||...+-|+..|.-++|+++=.
T Consensus 646 E~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~ 683 (1248)
T KOG0947|consen 646 EVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLR 683 (1248)
T ss_pred HHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehh
Confidence 88888899999999999999999999999998888743
No 114
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.18 E-value=2.5e-06 Score=87.57 Aligned_cols=106 Identities=22% Similarity=0.189 Sum_probs=76.0
Q ss_pred cCCCCEEEEeCCHHHHHHHHHHHHHHHh------------------cCccCCCCe------------EEEEecCCCCHHH
Q 038855 144 EAPGDILVFLTGQEEIESVERLVQERLL------------------QLPEASRKL------------VTVPIFSSLPSEQ 193 (260)
Q Consensus 144 ~~~g~iLVFl~~~~~ve~v~~~L~~~l~------------------~~~~~~~~~------------~~~~lh~~l~~~~ 193 (260)
.+..+++||.=++.+||..+-.+.++-- +++...+++ .+..+||+|-+--
T Consensus 381 ~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIl 460 (1041)
T KOG0948|consen 381 RNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPIL 460 (1041)
T ss_pred hcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHH
Confidence 3456899999999999998877755321 122222221 3667899999887
Q ss_pred HHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccceeeecCCCceeeeEEeeehhhhhc
Q 038855 194 QMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYDPVKGMESLIVVPISKAQALQ 259 (260)
Q Consensus 194 r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~~yd~~~g~~~l~~~~isk~~~~q 259 (260)
.+-+.=-|..|-.|+|+||...+-|+..|.=+.|.- ..+.|| --..+|||-.+..|
T Consensus 461 KE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT----~~rKfD------G~~fRwissGEYIQ 516 (1041)
T KOG0948|consen 461 KEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFT----AVRKFD------GKKFRWISSGEYIQ 516 (1041)
T ss_pred HHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEe----eccccC------CcceeeecccceEE
Confidence 777777789999999999999999999998776642 234443 33467777776665
No 115
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.04 E-value=3.1e-05 Score=78.06 Aligned_cols=148 Identities=18% Similarity=0.120 Sum_probs=107.8
Q ss_pred CceEEEEeccC-C-HHHHHhhhCC--CcEEEecCceeeeeEEEeeCCC---------cchHHHHHHHHHHHHhhcCCCCE
Q 038855 83 PLKLIIMSASL-D-ARGFSEYFGC--AKAVHVQGRQFPVEILYTLYPE---------PDFLDATLITIFQVHLDEAPGDI 149 (260)
Q Consensus 83 ~~qlil~SATl-~-~~~~~~~~~~--~~~v~v~~~~~~v~~~~~~~~~---------~~~~~~~~~~l~~i~~~~~~g~i 149 (260)
.++++-.|||+ + .+..++.|+- ...+++.|....-+.+-+..|+ .+++......+.++.. ..-.+
T Consensus 451 ~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~--~~~R~ 528 (1034)
T KOG4150|consen 451 NMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQ--HGLRC 528 (1034)
T ss_pred CcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHH--cCCcE
Confidence 68899999999 4 3456667654 4567887765444555554432 2233333332333322 34579
Q ss_pred EEEeCCHHHHHHHHHHHHHHHhcCccCCCCe--EEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEE
Q 038855 150 LVFLTGQEEIESVERLVQERLLQLPEASRKL--VTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYV 227 (260)
Q Consensus 150 LVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~--~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~V 227 (260)
+-||+.+.-||.+....++.+-... +.+ .+..+.|+...+.|.++...+=-|+.+-|||||..|.||||.+++.|
T Consensus 529 IAFC~~R~~CEL~~~~~R~I~~ET~---~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAV 605 (1034)
T KOG4150|consen 529 IAFCPSRKLCELVLCLTREILAETA---PHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAV 605 (1034)
T ss_pred EEeccHHHHHHHHHHHHHHHHHHhh---HHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeE
Confidence 9999999999999988888764211 122 35668899999999999888878999999999999999999999999
Q ss_pred EeCCCccc
Q 038855 228 IDPGFVKA 235 (260)
Q Consensus 228 Id~g~~~~ 235 (260)
+.+|||-.
T Consensus 606 l~~GFP~S 613 (1034)
T KOG4150|consen 606 LHLGFPGS 613 (1034)
T ss_pred EEccCchh
Confidence 99999975
No 116
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.00 E-value=7.4e-05 Score=74.77 Aligned_cols=134 Identities=13% Similarity=0.127 Sum_probs=97.5
Q ss_pred CceEEEEeccCCHHHHHhhhCCCcEEEecCceeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHH
Q 038855 83 PLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESV 162 (260)
Q Consensus 83 ~~qlil~SATl~~~~~~~~~~~~~~v~v~~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v 162 (260)
..|+|.+|||...-.+..--|. -+-.+-.++.-+.-...-.|....++..+..+..-.. ....+||-.-|+.-+|.+
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~~-vveQiIRPTGLlDP~ievRp~~~QvdDL~~EI~~r~~--~~eRvLVTtLTKkmAEdL 462 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGGN-VVEQIIRPTGLLDPEIEVRPTKGQVDDLLSEIRKRVA--KNERVLVTTLTKKMAEDL 462 (663)
T ss_pred cCCEEEEECCCChHHHHhccCc-eeEEeecCCCCCCCceeeecCCCcHHHHHHHHHHHHh--cCCeEEEEeehHHHHHHH
Confidence 4689999999855444432211 1111111111111111122334456666665554332 247899999999999999
Q ss_pred HHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEE
Q 038855 163 ERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVI 228 (260)
Q Consensus 163 ~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VI 228 (260)
.+.|.+. ++++..+||.+..-+|.+++...+.|...|||--|+.--|+|+|.|..|.
T Consensus 463 T~Yl~e~---------gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVA 519 (663)
T COG0556 463 TEYLKEL---------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVA 519 (663)
T ss_pred HHHHHhc---------CceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEE
Confidence 9999994 99999999999999999999999999999999999999999999999987
No 117
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.00 E-value=0.00022 Score=76.12 Aligned_cols=76 Identities=13% Similarity=0.103 Sum_probs=54.0
Q ss_pred EEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcc--------------------------cC
Q 038855 149 ILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAP--------------------------AA 202 (260)
Q Consensus 149 iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~--------------------------~~ 202 (260)
.||=+++...+-.+++.|...+. .....+.++.+||..+...|..+.+. ..
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~---~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~ 835 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLA---EEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPA 835 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhcc---ccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccc
Confidence 47888888888888888877643 22245778899999977666554322 11
Q ss_pred CCCeEEEEecCcccccCCCCCceEEE
Q 038855 203 AGFRKVILATNIAETSVTIPGIKYVI 228 (260)
Q Consensus 203 ~g~~kVlvaTdiae~gidIp~V~~VI 228 (260)
.+...|+|||.+.|.|+|+ +.+++|
T Consensus 836 ~~~~~i~v~Tqv~E~g~D~-dfd~~~ 860 (1110)
T TIGR02562 836 LNHLFIVLATPVEEVGRDH-DYDWAI 860 (1110)
T ss_pred cCCCeEEEEeeeEEEEecc-cCCeee
Confidence 2567899999999999999 445544
No 118
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.93 E-value=0.00022 Score=70.14 Aligned_cols=206 Identities=16% Similarity=0.148 Sum_probs=143.8
Q ss_pred CCCCcccEEEEecCCcC-CcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCc
Q 038855 6 PYLSRYSVIIVDEAHER-TVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPL 84 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher-~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (260)
..||.+.++|+|-||-. +...+-++.+++.+...+++ ..++|-.-|..|+=|..+.. -+
T Consensus 157 DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~---------~~~~DfsRVR~w~Ldg~a~~-----------~R 216 (442)
T PF06862_consen 157 DFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKK---------SHDTDFSRVRPWYLDGQAKY-----------YR 216 (442)
T ss_pred chhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCC---------CCCCCHHHHHHHHHcCcchh-----------ee
Confidence 46899999999999842 34456677788766555542 33477778888887764433 47
Q ss_pred eEEEEeccCCHHHHH---hhh----CCCcEE-------EecCceeeeeEEEeeCCCcchHH---HHHH----HHHHHHh-
Q 038855 85 KLIIMSASLDARGFS---EYF----GCAKAV-------HVQGRQFPVEILYTLYPEPDFLD---ATLI----TIFQVHL- 142 (260)
Q Consensus 85 qlil~SATl~~~~~~---~~~----~~~~~v-------~v~~~~~~v~~~~~~~~~~~~~~---~~~~----~l~~i~~- 142 (260)
|+|++|+...++..+ .+. |...+. .+.....++++.|..-+..+..+ +.+. .++--..
T Consensus 217 Qtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~~ 296 (442)
T PF06862_consen 217 QTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLKR 296 (442)
T ss_pred EeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhhh
Confidence 899999999776544 222 221111 11222346778877644433221 1111 1222222
Q ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCccc--ccCC
Q 038855 143 DEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAE--TSVT 220 (260)
Q Consensus 143 ~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae--~gid 220 (260)
....+.+|||+|+.=+--.+-+.|.+ .++.++.+|=--+..+-.++-..|..|+.+|||-|--+= +=..
T Consensus 297 ~~~~~~~LIfIPSYfDfVRlRN~lk~---------~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~ 367 (442)
T PF06862_consen 297 DSKMSGTLIFIPSYFDFVRLRNYLKK---------ENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYR 367 (442)
T ss_pred ccCCCcEEEEecchhhhHHHHHHHHh---------cCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhce
Confidence 55578899999999999999888886 589999999888888888888899999999999997653 3457
Q ss_pred CCCceEEEeCCCccceeeec
Q 038855 221 IPGIKYVIDPGFVKARSYDP 240 (260)
Q Consensus 221 Ip~V~~VId~g~~~~~~yd~ 240 (260)
|-||++||=+|+|..+.|-+
T Consensus 368 irGi~~viFY~~P~~p~fY~ 387 (442)
T PF06862_consen 368 IRGIRHVIFYGPPENPQFYS 387 (442)
T ss_pred ecCCcEEEEECCCCChhHHH
Confidence 88999999999999977543
No 119
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.87 E-value=0.0001 Score=76.71 Aligned_cols=79 Identities=13% Similarity=0.272 Sum_probs=57.6
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHH-HHhcccCCCCeEEEEecCcccccCCCCCc
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQM-KVFAPAAAGFRKVILATNIAETSVTIPGI 224 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~-~v~~~~~~g~~kVlvaTdiae~gidIp~V 224 (260)
.+++||||.+...++.+.+.+.+..++ . .+--+..+-|+-.+.++. ..|.. +.-..+|.++.++..+|||+|.|
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype---~-~~~~a~~IT~d~~~~q~~Id~f~~-ke~~P~IaitvdlL~TGiDvpev 500 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPE---Y-NGRYAMKITGDAEQAQALIDNFID-KEKYPRIAITVDLLTTGVDVPEV 500 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCcc---c-cCceEEEEeccchhhHHHHHHHHh-cCCCCceEEehhhhhcCCCchhe
Confidence 679999999999999999999887544 1 222355555555554432 22222 34567999999999999999999
Q ss_pred eEEEe
Q 038855 225 KYVID 229 (260)
Q Consensus 225 ~~VId 229 (260)
..+|=
T Consensus 501 ~nlVF 505 (875)
T COG4096 501 VNLVF 505 (875)
T ss_pred eeeee
Confidence 88773
No 120
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=97.85 E-value=0.00017 Score=72.02 Aligned_cols=83 Identities=14% Similarity=0.224 Sum_probs=64.9
Q ss_pred HHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccC-CCCeEEEEe
Q 038855 133 TLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAA-AGFRKVILA 211 (260)
Q Consensus 133 ~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~-~g~~kVlva 211 (260)
.++.|.+.|.. .+.+||||..+.-.....+-.|. --.|+|.-+|.+||++++.|+ +...+-|+-
T Consensus 531 aCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl~--------------KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFl 595 (776)
T KOG1123|consen 531 ACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKLG--------------KPFIYGPTSQNERMKILQNFQTNPKVNTIFL 595 (776)
T ss_pred HHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHcC--------------CceEECCCchhHHHHHHHhcccCCccceEEE
Confidence 55566666665 57899999987765444333332 235789999999999999998 457788899
Q ss_pred cCcccccCCCCCceEEEeC
Q 038855 212 TNIAETSVTIPGIKYVIDP 230 (260)
Q Consensus 212 Tdiae~gidIp~V~~VId~ 230 (260)
+-++.+++|+|...+.|..
T Consensus 596 SKVgDtSiDLPEAnvLIQI 614 (776)
T KOG1123|consen 596 SKVGDTSIDLPEANVLIQI 614 (776)
T ss_pred eeccCccccCCcccEEEEE
Confidence 9999999999999999864
No 121
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=97.82 E-value=0.00016 Score=74.13 Aligned_cols=79 Identities=9% Similarity=0.040 Sum_probs=58.1
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHH---------------------HHHHHhcccCC-
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSE---------------------QQMKVFAPAAA- 203 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~---------------------~r~~v~~~~~~- 203 (260)
+++.+|||.+++.+..+++.+.+.+... .+...+.++++-..+ ...++.+.|+.
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~----~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~ 589 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEK----FEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKE 589 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccc----cCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCC
Confidence 5899999999999999999988764321 123445555543332 12356777764
Q ss_pred CCeEEEEecCcccccCCCCCceEEE
Q 038855 204 GFRKVILATNIAETSVTIPGIKYVI 228 (260)
Q Consensus 204 g~~kVlvaTdiae~gidIp~V~~VI 228 (260)
+..+|+|.+|..-+|+|.|.+.+++
T Consensus 590 ~~~~ilIVvdmllTGFDaP~l~tLy 614 (667)
T TIGR00348 590 ENPKLLIVVDMLLTGFDAPILNTLY 614 (667)
T ss_pred CCceEEEEEcccccccCCCccceEE
Confidence 6789999999999999999998765
No 122
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.63 E-value=0.00082 Score=69.36 Aligned_cols=142 Identities=16% Similarity=0.203 Sum_probs=92.2
Q ss_pred ceEEEEeccCCHH----HHHhhhCC-----CcEEEecCceeee---eEEEeeC------CCcchHHHHHHHHHHHHhhcC
Q 038855 84 LKLIIMSASLDAR----GFSEYFGC-----AKAVHVQGRQFPV---EILYTLY------PEPDFLDATLITIFQVHLDEA 145 (260)
Q Consensus 84 ~qlil~SATl~~~----~~~~~~~~-----~~~v~v~~~~~~v---~~~~~~~------~~~~~~~~~~~~l~~i~~~~~ 145 (260)
..+|++|||+.+. .+.+-+|- ...+.++.. |+. -..|+.. ..+.+.......+..+.. .
T Consensus 457 ~~vIltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~Sp-F~~~~q~~l~vp~~~~~p~~~~~~~~~~~~~i~~l~~--~ 533 (697)
T PRK11747 457 PGAVLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALPSP-FDYPNQGKLVIPKMRAEPDNEEAHTAEMAEFLPELLE--K 533 (697)
T ss_pred CEEEEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcCCC-CCHHHccEEEeCCCCCCCCCcHHHHHHHHHHHHHHHh--c
Confidence 3579999999652 23333342 234444443 432 2334332 122456667777777766 4
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccC----CCCeEEEEecCcccccCCC
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAA----AGFRKVILATNIAETSVTI 221 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~----~g~~kVlvaTdiae~gidI 221 (260)
+|.+|||+|+...++.++..|.... +.. +..+|.. .+.++++.|+ .|...||++|.-..-|||+
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~--------~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~ 601 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDL--------RLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDL 601 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhc--------CCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccC
Confidence 5568999999999999999987631 222 3446643 3455664443 5778899999999999999
Q ss_pred CC--ceEEEeCCCccceeeec
Q 038855 222 PG--IKYVIDPGFVKARSYDP 240 (260)
Q Consensus 222 p~--V~~VId~g~~~~~~yd~ 240 (260)
|| .++||=.++|...--||
T Consensus 602 pGd~l~~vII~kLPF~~p~dp 622 (697)
T PRK11747 602 PGDYLTQVIITKIPFAVPDSP 622 (697)
T ss_pred CCCceEEEEEEcCCCCCCCCH
Confidence 97 89999999987633333
No 123
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=97.47 E-value=0.0012 Score=68.61 Aligned_cols=138 Identities=16% Similarity=0.133 Sum_probs=90.4
Q ss_pred eEEEEeccC--CHHHHHhhhCCCcEEEecCceeeeeEEEe----eCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHH
Q 038855 85 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYT----LYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEE 158 (260)
Q Consensus 85 qlil~SATl--~~~~~~~~~~~~~~v~v~~~~~~v~~~~~----~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ 158 (260)
++..|+.|. ..+.|.+.++ -.++.+|.. .|+...-. .......+.+.+..+...+.. +-||||.+.+.+.
T Consensus 364 kLsGMTGTa~t~~~Ef~~iY~-l~Vv~IPtn-kp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~--GrPVLVgt~sI~~ 439 (764)
T PRK12326 364 TVCGMTGTAVAAGEQLRQFYD-LGVSVIPPN-KPNIREDEADRVYATAAEKNDAIVEHIAEVHET--GQPVLVGTHDVAE 439 (764)
T ss_pred hheeecCCChhHHHHHHHHhC-CcEEECCCC-CCceeecCCCceEeCHHHHHHHHHHHHHHHHHc--CCCEEEEeCCHHH
Confidence 588899998 3456666554 446666654 23221111 111233455566666665553 5689999999999
Q ss_pred HHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCC---------------C
Q 038855 159 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIP---------------G 223 (260)
Q Consensus 159 ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp---------------~ 223 (260)
.|.+.+.|.+ .+++...|.+.-...+-.-+-++-++| .|.||||+|.||.||. |
T Consensus 440 SE~ls~~L~~---------~gI~h~vLNAk~~~~EA~IIa~AG~~g--aVTIATNMAGRGTDIkLg~~~~~~~~~V~~~G 508 (764)
T PRK12326 440 SEELAERLRA---------AGVPAVVLNAKNDAEEARIIAEAGKYG--AVTVSTQMAGRGTDIRLGGSDEADRDRVAELG 508 (764)
T ss_pred HHHHHHHHHh---------CCCcceeeccCchHhHHHHHHhcCCCC--cEEEEecCCCCccCeecCCCcccchHHHHHcC
Confidence 9999999988 488888888775554433333433333 5999999999999995 2
Q ss_pred ceEEEeCCCcccee
Q 038855 224 IKYVIDPGFVKARS 237 (260)
Q Consensus 224 V~~VId~g~~~~~~ 237 (260)
==|||=+.++..+.
T Consensus 509 GLhVIgTerheSrR 522 (764)
T PRK12326 509 GLHVIGTGRHRSER 522 (764)
T ss_pred CcEEEeccCCchHH
Confidence 34788777666543
No 124
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=97.45 E-value=0.0011 Score=69.96 Aligned_cols=139 Identities=19% Similarity=0.191 Sum_probs=89.3
Q ss_pred eEEEEeccCCH--HHHHhhhCCCcEEEecCceeeeeEEEee----CCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHH
Q 038855 85 KLIIMSASLDA--RGFSEYFGCAKAVHVQGRQFPVEILYTL----YPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEE 158 (260)
Q Consensus 85 qlil~SATl~~--~~~~~~~~~~~~v~v~~~~~~v~~~~~~----~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ 158 (260)
++..||.|... ..|.+.+ +-.++.+|.. .|+.-.-.. ......+.+.+..+...+. .+-|+||.+.+.+.
T Consensus 363 kLsGMTGTA~te~~Ef~~iY-~l~Vv~IPTn-kP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~--~gqPVLVgT~SIe~ 438 (925)
T PRK12903 363 KLSGMTGTAKTEEQEFIDIY-NMRVNVVPTN-KPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHK--KGQPILIGTAQVED 438 (925)
T ss_pred hhhccCCCCHHHHHHHHHHh-CCCEEECCCC-CCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHh--cCCCEEEEeCcHHH
Confidence 57888888733 3455544 3567777764 232211111 1122344555555555554 35689999999999
Q ss_pred HHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCC-CeEEEEecCcccccCCCCC---ce-----EEEe
Q 038855 159 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAG-FRKVILATNIAETSVTIPG---IK-----YVID 229 (260)
Q Consensus 159 ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g-~~kVlvaTdiae~gidIp~---V~-----~VId 229 (260)
.+.+.+.|.+ .+++.-.|.+.-...+-.-+- .+| .-.|.||||+|.||.||.- |. |||-
T Consensus 439 SE~ls~~L~~---------~gi~h~vLNAk~~e~EA~IIa---~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIg 506 (925)
T PRK12903 439 SETLHELLLE---------ANIPHTVLNAKQNAREAEIIA---KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLG 506 (925)
T ss_pred HHHHHHHHHH---------CCCCceeecccchhhHHHHHH---hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEe
Confidence 9999999988 478877788764444433332 334 3469999999999999952 22 9999
Q ss_pred CCCccceeee
Q 038855 230 PGFVKARSYD 239 (260)
Q Consensus 230 ~g~~~~~~yd 239 (260)
+..+..+.-|
T Consensus 507 TerheSrRID 516 (925)
T PRK12903 507 TDKAESRRID 516 (925)
T ss_pred cccCchHHHH
Confidence 9887654433
No 125
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.41 E-value=0.00095 Score=71.01 Aligned_cols=130 Identities=18% Similarity=0.249 Sum_probs=90.5
Q ss_pred CCCceEEEEeccCCHHH-----HHhhhCCCcEEEecCcee---eeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEE
Q 038855 81 FPPLKLIIMSASLDARG-----FSEYFGCAKAVHVQGRQF---PVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVF 152 (260)
Q Consensus 81 ~~~~qlil~SATl~~~~-----~~~~~~~~~~v~v~~~~~---~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF 152 (260)
...-++|++|||..+++ |.+.+|= .+.+... .+...|+.. . ....+..+.+.-. .-.|||
T Consensus 274 ~k~g~LvvsSATg~~rg~R~~LfReLlgF----evG~~~~~LRNIvD~y~~~---~----~~e~~~elvk~lG-~GgLIf 341 (1187)
T COG1110 274 RKLGILVVSSATGKPRGSRLKLFRELLGF----EVGSGGEGLRNIVDIYVES---E----SLEKVVELVKKLG-DGGLIF 341 (1187)
T ss_pred cCCceEEEeeccCCCCCchHHHHHHHhCC----ccCccchhhhheeeeeccC---c----cHHHHHHHHHHhC-CCeEEE
Confidence 33568999999985543 5555541 1111111 133334443 2 2233333333332 358999
Q ss_pred eCC---HHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEec----CcccccCCCC-Cc
Q 038855 153 LTG---QEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILAT----NIAETSVTIP-GI 224 (260)
Q Consensus 153 l~~---~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaT----diae~gidIp-~V 224 (260)
+|. ++.++.+++.|+. .++.+..+|++- .+.++.|..|...|||.. .++-||||.| -|
T Consensus 342 V~~d~G~e~aeel~e~Lr~---------~Gi~a~~~~a~~-----~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~ri 407 (1187)
T COG1110 342 VPIDYGREKAEELAEYLRS---------HGINAELIHAEK-----EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRI 407 (1187)
T ss_pred EEcHHhHHHHHHHHHHHHh---------cCceEEEeeccc-----hhhhhhhccCceeEEEEecccccceeecCCchhhe
Confidence 999 8999999999988 499999999733 567999999999999864 6889999999 58
Q ss_pred eEEEeCCCccce
Q 038855 225 KYVIDPGFVKAR 236 (260)
Q Consensus 225 ~~VId~g~~~~~ 236 (260)
+|+|=.|.|+.+
T Consensus 408 rYaIF~GvPk~r 419 (1187)
T COG1110 408 RYAVFYGVPKFR 419 (1187)
T ss_pred eEEEEecCCcee
Confidence 999999999764
No 126
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.40 E-value=0.0016 Score=67.19 Aligned_cols=150 Identities=14% Similarity=0.182 Sum_probs=88.9
Q ss_pred ceEEEEeccCC-HHHHHhhhCCC-cEEEecCceee-----------------eeEEEeeCCCcchHHHHHHHHHHHHhhc
Q 038855 84 LKLIIMSASLD-ARGFSEYFGCA-KAVHVQGRQFP-----------------VEILYTLYPEPDFLDATLITIFQVHLDE 144 (260)
Q Consensus 84 ~qlil~SATl~-~~~~~~~~~~~-~~v~v~~~~~~-----------------v~~~~~~~~~~~~~~~~~~~l~~i~~~~ 144 (260)
..+|++||||. .+.|...+|-. +........+| +...|-....+.+.......+..+...
T Consensus 442 ~svil~SgTL~p~~~~~~~Lg~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~~~i~~~~~~- 520 (705)
T TIGR00604 442 RSVILASGTLSPLDAFPRNLGFNPVSQDSPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGELLVEFSKI- 520 (705)
T ss_pred CEEEEecccCCcHHHHHHHhCCCCccceecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHHHHHHHHhhc-
Confidence 45899999995 45677666532 11111111111 111121112234555666666666554
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHH--hcCccCCCCeEEEEecCCCCHHHHHHHhcccC----CCCeEEEEec--Cccc
Q 038855 145 APGDILVFLTGQEEIESVERLVQERL--LQLPEASRKLVTVPIFSSLPSEQQMKVFAPAA----AGFRKVILAT--NIAE 216 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l--~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~----~g~~kVlvaT--diae 216 (260)
.||.+|||+|+...++.+.+.+.+.- .... ..+..+..=.+. .++.++++.|+ .|..-||+|+ .-..
T Consensus 521 ~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~--~~k~i~~E~~~~---~~~~~~l~~f~~~~~~~~gavL~av~gGk~s 595 (705)
T TIGR00604 521 IPDGIVVFFPSYSYLENIVSTWKEMGILENIE--KKKLIFVETKDA---QETSDALERYKQAVSEGRGAVLLSVAGGKVS 595 (705)
T ss_pred CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHh--cCCCEEEeCCCc---chHHHHHHHHHHHHhcCCceEEEEecCCccc
Confidence 48999999999999999998887520 0000 011111111111 45667777774 3456799999 8888
Q ss_pred ccCCCCC--ceEEEeCCCccceeee
Q 038855 217 TSVTIPG--IKYVIDPGFVKARSYD 239 (260)
Q Consensus 217 ~gidIp~--V~~VId~g~~~~~~yd 239 (260)
=|||++| .+.||=.|+|.....|
T Consensus 596 EGIDf~~~~~r~ViivGlPf~~~~~ 620 (705)
T TIGR00604 596 EGIDFCDDLGRAVIMVGIPYEYTES 620 (705)
T ss_pred CccccCCCCCcEEEEEccCCCCCCC
Confidence 9999986 7888889999853333
No 127
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.38 E-value=0.0022 Score=67.44 Aligned_cols=142 Identities=11% Similarity=0.131 Sum_probs=89.1
Q ss_pred ceEEEEeccCCHH---HHHhhhCC--CcEEEecCceee-eeEEEee--CC------CcchHHHHHHHHHHHHhhcCCCCE
Q 038855 84 LKLIIMSASLDAR---GFSEYFGC--AKAVHVQGRQFP-VEILYTL--YP------EPDFLDATLITIFQVHLDEAPGDI 149 (260)
Q Consensus 84 ~qlil~SATl~~~---~~~~~~~~--~~~v~v~~~~~~-v~~~~~~--~~------~~~~~~~~~~~l~~i~~~~~~g~i 149 (260)
..+|++||||... .+.+-+|- .....++. .+. -...++. .+ .+.|.+.....+..+. ..+|.+
T Consensus 574 ~~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~~-~~~~~~~~~i~~~~p~~~~~~~~~~~~~~~~~i~~~~--~~~g~~ 650 (820)
T PRK07246 574 CKTYFVSATLQISPRVSLADLLGFEEYLFHKIEK-DKKQDQLVVVDQDMPLVTETSDEVYAEEIAKRLEELK--QLQQPI 650 (820)
T ss_pred CeEEEEecccccCCCCcHHHHcCCCccceecCCC-ChHHccEEEeCCCCCCCCCCChHHHHHHHHHHHHHHH--hcCCCE
Confidence 5789999999432 25554552 12222221 111 1122222 11 1345556666665555 357999
Q ss_pred EEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCC--CceEE
Q 038855 150 LVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIP--GIKYV 227 (260)
Q Consensus 150 LVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp--~V~~V 227 (260)
||++|+.+.++.+++.|... .+.+ ...|.-. .+.++.+.|+.+...||++|.-.--|||+| +...|
T Consensus 651 LVLFtS~~~l~~v~~~l~~~---------~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~v 718 (820)
T PRK07246 651 LVLFNSKKHLLAVSDLLDQW---------QVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIE 718 (820)
T ss_pred EEEECcHHHHHHHHHHHhhc---------CCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEE
Confidence 99999999999999888652 2333 3334222 245578888888889999999999999997 45666
Q ss_pred EeCCCccceeeec
Q 038855 228 IDPGFVKARSYDP 240 (260)
Q Consensus 228 Id~g~~~~~~yd~ 240 (260)
|=.++|...-.||
T Consensus 719 iI~kLPF~~P~dP 731 (820)
T PRK07246 719 VITRLPFDNPEDP 731 (820)
T ss_pred EEecCCCCCCCCH
Confidence 6688887655554
No 128
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.34 E-value=0.0014 Score=69.81 Aligned_cols=143 Identities=16% Similarity=0.219 Sum_probs=93.5
Q ss_pred ceEEEEeccCCHH----HHHhhhCCC----cEEEecCceeee---eEEEeeC--CC------cchHHHHHHHHHHHHhhc
Q 038855 84 LKLIIMSASLDAR----GFSEYFGCA----KAVHVQGRQFPV---EILYTLY--PE------PDFLDATLITIFQVHLDE 144 (260)
Q Consensus 84 ~qlil~SATl~~~----~~~~~~~~~----~~v~v~~~~~~v---~~~~~~~--~~------~~~~~~~~~~l~~i~~~~ 144 (260)
..+|++|||+... .+.+-+|-. ..+.++.. |+. -..|+.. +. +.|.......+..+...
T Consensus 673 ~~~iltSATL~~~~~f~~~~~~lGl~~~~~~~~~~~Sp-F~~~~q~~l~vp~d~p~~~~~~~~~~~~~la~~i~~l~~~- 750 (928)
T PRK08074 673 KSVILTSATLTVNGSFDYIIERLGLEDFYPRTLQIPSP-FSYEEQAKLMIPTDMPPIKDVPIEEYIEEVAAYIAKIAKA- 750 (928)
T ss_pred CcEEEEeeecccCCCcHHHHHhcCCCCCCccEEEeCCC-CCHHHhcEEEeecCCCCCCCCChHHHHHHHHHHHHHHHHh-
Confidence 4689999999542 334444422 23444433 432 1223321 11 34455666666665543
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCC-
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPG- 223 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~- 223 (260)
.+|.+|||+|+.+.++.+++.|...... .++.+.. . ++....|.++++.|+.+...||++|.-..-|||+||
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~-----~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~ 823 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEEL-----EGYVLLA-Q-GVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGD 823 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccc-----cCceEEe-c-CCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCC
Confidence 4789999999999999999999864210 1233222 2 333345677888888888899999999999999996
Q ss_pred -ceEEEeCCCccc
Q 038855 224 -IKYVIDPGFVKA 235 (260)
Q Consensus 224 -V~~VId~g~~~~ 235 (260)
+++||=.++|..
T Consensus 824 ~l~~viI~kLPF~ 836 (928)
T PRK08074 824 ELSCLVIVRLPFA 836 (928)
T ss_pred ceEEEEEecCCCC
Confidence 589998888874
No 129
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.22 E-value=0.0022 Score=64.69 Aligned_cols=104 Identities=21% Similarity=0.300 Sum_probs=75.0
Q ss_pred HHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCC--CCeEEEEecCc
Q 038855 137 IFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAA--GFRKVILATNI 214 (260)
Q Consensus 137 l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~--g~~kVlvaTdi 214 (260)
+..-.....+|+++|-+ ++.+|-.+...+++. .+-.++.++|+||.+.|..=-+.|.. +..+|+||||.
T Consensus 348 ~~~sl~nlk~GDCvV~F-Skk~I~~~k~kIE~~--------g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDA 418 (700)
T KOG0953|consen 348 ALGSLSNLKPGDCVVAF-SKKDIFTVKKKIEKA--------GNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDA 418 (700)
T ss_pred hhhhhccCCCCCeEEEe-ehhhHHHHHHHHHHh--------cCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeecc
Confidence 33444556689998855 467788899999885 35569999999999987766666643 78999999999
Q ss_pred ccccCCCCCceEEEeCCCccceeeecCCCceeeeEEeeehhhhhc
Q 038855 215 AETSVTIPGIKYVIDPGFVKARSYDPVKGMESLIVVPISKAQALQ 259 (260)
Q Consensus 215 ae~gidIp~V~~VId~g~~~~~~yd~~~g~~~l~~~~isk~~~~q 259 (260)
..-|+.. +|+-||=+-+.| |+ | -.+.+|+-.|+.|
T Consensus 419 IGMGLNL-~IrRiiF~sl~K---ys---g---~e~~~it~sqikQ 453 (700)
T KOG0953|consen 419 IGMGLNL-NIRRIIFYSLIK---YS---G---RETEDITVSQIKQ 453 (700)
T ss_pred ccccccc-ceeEEEEeeccc---CC---c---ccceeccHHHHHH
Confidence 9999998 788777554433 32 2 2344566666655
No 130
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=97.21 E-value=0.0035 Score=65.20 Aligned_cols=63 Identities=14% Similarity=0.192 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHH--HHHHhcccCCCCeEEEEecCcccccCCCCCceEEE
Q 038855 159 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQ--QMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVI 228 (260)
Q Consensus 159 ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~--r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VI 228 (260)
.|.+++.|+..+ .+.+++.+-++.+... -+..+..|.+|+..|||-|.+.+-|.+.|+|+.|.
T Consensus 493 terieeeL~~~F-------P~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVg 557 (730)
T COG1198 493 TERIEEELKRLF-------PGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVG 557 (730)
T ss_pred HHHHHHHHHHHC-------CCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEE
Confidence 355566777765 3677888887777643 45678999999999999999999999999999985
No 131
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=97.16 E-value=0.002 Score=69.36 Aligned_cols=103 Identities=12% Similarity=0.022 Sum_probs=79.8
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCC---CCeEEEEecCcccccCCC
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAA---GFRKVILATNIAETSVTI 221 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~---g~~kVlvaTdiae~gidI 221 (260)
.+.++|||+.-...++.+...|.. .++.++.++|+.+.++|..++..|.+ +...+|++|..+..||++
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~~---------~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINL 556 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLMY---------RGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINL 556 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHHH---------cCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCch
Confidence 467999999888888877777766 48899999999999999999999964 245678999999999999
Q ss_pred CCceEEEeCCCccceeee-------cCCCce--eeeEEeeehhh
Q 038855 222 PGIKYVIDPGFVKARSYD-------PVKGME--SLIVVPISKAQ 256 (260)
Q Consensus 222 p~V~~VId~g~~~~~~yd-------~~~g~~--~l~~~~isk~~ 256 (260)
...++||.+..+-.+.-+ ++.|-. +.+.+.|++.+
T Consensus 557 t~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gT 600 (1033)
T PLN03142 557 ATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYT 600 (1033)
T ss_pred hhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCc
Confidence 999999999876433222 455644 34445555543
No 132
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.07 E-value=0.0073 Score=61.26 Aligned_cols=97 Identities=15% Similarity=0.207 Sum_probs=70.5
Q ss_pred chHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCe-
Q 038855 128 DFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFR- 206 (260)
Q Consensus 128 ~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~- 206 (260)
.........+..+... .+|.+|||+|+.+.++.+.+.+.... ....+..+|..+.+ ..++.|+++..
T Consensus 462 ~~~~~~~~~i~~~~~~-~~~~~lvlF~Sy~~l~~~~~~~~~~~--------~~~~v~~q~~~~~~---~~l~~f~~~~~~ 529 (654)
T COG1199 462 ELLAKLAAYLREILKA-SPGGVLVLFPSYEYLKRVAERLKDER--------STLPVLTQGEDERE---ELLEKFKASGEG 529 (654)
T ss_pred HHHHHHHHHHHHHHhh-cCCCEEEEeccHHHHHHHHHHHhhcC--------ccceeeecCCCcHH---HHHHHHHHhcCC
Confidence 4555566666665554 47799999999999999999988731 11356677777766 44555554444
Q ss_pred EEEEecCcccccCCCCCc--eEEEeCCCccce
Q 038855 207 KVILATNIAETSVTIPGI--KYVIDPGFVKAR 236 (260)
Q Consensus 207 kVlvaTdiae~gidIp~V--~~VId~g~~~~~ 236 (260)
-++|+|.-..-|||+|+= +.||=.|+|...
T Consensus 530 ~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~ 561 (654)
T COG1199 530 LILVGGGSFWEGVDFPGDALRLVVIVGLPFPN 561 (654)
T ss_pred eEEEeeccccCcccCCCCCeeEEEEEecCCCC
Confidence 899999999999999854 777777777653
No 133
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=97.02 E-value=0.0038 Score=66.38 Aligned_cols=138 Identities=20% Similarity=0.231 Sum_probs=88.8
Q ss_pred eEEEEeccC--CHHHHHhhhCCCcEEEecCceeeeeEE-E---eeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHH
Q 038855 85 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEIL-Y---TLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEE 158 (260)
Q Consensus 85 qlil~SATl--~~~~~~~~~~~~~~v~v~~~~~~v~~~-~---~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ 158 (260)
++..|+.|. ....|.+.++ -.++.+|.. .|+.-. + +.......+.+.+..+...+.. .-+|||-+.+.+.
T Consensus 505 kl~GmTGTa~~e~~Ef~~iY~-l~v~~iPt~-kp~~r~d~~d~iy~t~~~k~~ai~~ei~~~~~~--grPvLigt~si~~ 580 (970)
T PRK12899 505 KLAGMTGTAITESREFKEIYN-LYVLQVPTF-KPCLRIDHNDEFYMTEREKYHAIVAEIASIHRK--GNPILIGTESVEV 580 (970)
T ss_pred hhcccCCCCHHHHHHHHHHhC-CCEEECCCC-CCceeeeCCCcEecCHHHHHHHHHHHHHHHHhC--CCCEEEEeCcHHH
Confidence 477788887 2334555443 456667654 232211 1 1112234556666666666664 4579999999999
Q ss_pred HHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCC---Cc-----eEEEeC
Q 038855 159 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIP---GI-----KYVIDP 230 (260)
Q Consensus 159 ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp---~V-----~~VId~ 230 (260)
-+.+...|.+ .+++...|...-...+-.-+-++.++ -.|.||||+|.||.||. +| =|||-+
T Consensus 581 se~ls~~L~~---------~gi~h~vLNak~~~~Ea~iia~AG~~--g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgT 649 (970)
T PRK12899 581 SEKLSRILRQ---------NRIEHTVLNAKNHAQEAEIIAGAGKL--GAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGT 649 (970)
T ss_pred HHHHHHHHHH---------cCCcceecccchhhhHHHHHHhcCCC--CcEEEeeccccCCcccccCchHHhcCCcEEEee
Confidence 9999999988 48887778776444444434333333 45999999999999993 22 388888
Q ss_pred CCcccee
Q 038855 231 GFVKARS 237 (260)
Q Consensus 231 g~~~~~~ 237 (260)
.++..+.
T Consensus 650 er~es~R 656 (970)
T PRK12899 650 SRHQSRR 656 (970)
T ss_pred ccCchHH
Confidence 8876544
No 134
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=97.00 E-value=0.0051 Score=64.89 Aligned_cols=122 Identities=20% Similarity=0.162 Sum_probs=77.7
Q ss_pred eEEEEeccCC--HHHHHhhhCCCcEEEecCceeeeeEEEe----eCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHH
Q 038855 85 KLIIMSASLD--ARGFSEYFGCAKAVHVQGRQFPVEILYT----LYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEE 158 (260)
Q Consensus 85 qlil~SATl~--~~~~~~~~~~~~~v~v~~~~~~v~~~~~----~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ 158 (260)
++..|+.|.. ...|.+.++ -.++.+|... |+.-.-. .......+.+.+..+...+.. +-||||-+.+.+.
T Consensus 361 kL~GMTGTa~te~~Ef~~iY~-l~vv~IPtnk-p~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~--grPVLIgT~SIe~ 436 (870)
T CHL00122 361 KLSGMTGTAKTEELEFEKIYN-LEVVCIPTHR-PMLRKDLPDLIYKDELSKWRAIADECLQMHQT--GRPILIGTTTIEK 436 (870)
T ss_pred hhcccCCCCHHHHHHHHHHhC-CCEEECCCCC-CccceeCCCeEEeCHHHHHHHHHHHHHHHHhc--CCCEEEeeCCHHH
Confidence 4778888883 334555443 4566676542 2211111 112223445555555555543 5689999999999
Q ss_pred HHHHHHHHHHHHhcCccCCCCeEEEEecCCC--CHHHHHHHhcccCCCCeEEEEecCcccccCCC
Q 038855 159 IESVERLVQERLLQLPEASRKLVTVPIFSSL--PSEQQMKVFAPAAAGFRKVILATNIAETSVTI 221 (260)
Q Consensus 159 ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l--~~~~r~~v~~~~~~g~~kVlvaTdiae~gidI 221 (260)
.|.+.+.|.+ .+++.-.|++.- ...|-.-+-++-++ -.|.||||+|.||.||
T Consensus 437 SE~ls~~L~~---------~gi~h~vLNAk~~~~~~EA~IIA~AG~~--G~VTIATNMAGRGTDI 490 (870)
T CHL00122 437 SELLSQLLKE---------YRLPHQLLNAKPENVRRESEIVAQAGRK--GSITIATNMAGRGTDI 490 (870)
T ss_pred HHHHHHHHHH---------cCCccceeeCCCccchhHHHHHHhcCCC--CcEEEeccccCCCcCe
Confidence 9999999988 488888888763 23343333333333 3599999999999999
No 135
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=96.85 E-value=0.0055 Score=64.97 Aligned_cols=120 Identities=18% Similarity=0.218 Sum_probs=76.5
Q ss_pred eEEEEeccCC--HHHHHhhhCCCcEEEecCceeeee------EEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCH
Q 038855 85 KLIIMSASLD--ARGFSEYFGCAKAVHVQGRQFPVE------ILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQ 156 (260)
Q Consensus 85 qlil~SATl~--~~~~~~~~~~~~~v~v~~~~~~v~------~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~ 156 (260)
++..|+.|.. ...|.+.++ -.++.+|.. -|+. ..|. .....+.+.+..+...+.. +-+|||-+.+.
T Consensus 386 kLsGMTGTa~te~~Ef~~iY~-l~Vv~IPTn-kP~~R~D~~d~vy~--t~~eK~~Ai~~ei~~~~~~--GrPVLVGT~SV 459 (913)
T PRK13103 386 KLSGMTGTADTEAFEFRQIYG-LDVVVIPPN-KPLARKDFNDLVYL--TAEEKYAAIITDIKECMAL--GRPVLVGTATI 459 (913)
T ss_pred hhccCCCCCHHHHHHHHHHhC-CCEEECCCC-CCcccccCCCeEEc--CHHHHHHHHHHHHHHHHhC--CCCEEEEeCCH
Confidence 4677788872 334555443 456666654 2221 1111 1233445555655555553 56899999999
Q ss_pred HHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCC
Q 038855 157 EEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTI 221 (260)
Q Consensus 157 ~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidI 221 (260)
+..|.+.+.|.+ .+++.-.|.......+-.-+-++-++ -.|.||||+|.||.||
T Consensus 460 e~SE~ls~~L~~---------~gi~h~VLNAk~~~~EA~IIa~AG~~--GaVTIATNMAGRGTDI 513 (913)
T PRK13103 460 ETSEHMSNLLKK---------EGIEHKVLNAKYHEKEAEIIAQAGRP--GALTIATNMAGRGTDI 513 (913)
T ss_pred HHHHHHHHHHHH---------cCCcHHHhccccchhHHHHHHcCCCC--CcEEEeccCCCCCCCE
Confidence 999999999988 47776666666554444434333333 3599999999999999
No 136
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=96.83 E-value=0.00029 Score=74.04 Aligned_cols=203 Identities=8% Similarity=-0.160 Sum_probs=143.2
Q ss_pred CCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCceEE
Q 038855 8 LSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLKLI 87 (260)
Q Consensus 8 L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qli 87 (260)
....++.+.||.|+++.+||+++-++..+ .++.
T Consensus 519 m~~ty~dl~v~lmsatIdTd~f~~~f~~~-----------------------------------------------p~~~ 551 (1282)
T KOG0921|consen 519 MISTYRDLRVVLMSATIDTDLFTNFFSSI-----------------------------------------------PDVT 551 (1282)
T ss_pred hhccchhhhhhhhhcccchhhhhhhhccc-----------------------------------------------ccee
Confidence 34567889999999999999999887643 4579
Q ss_pred EEeccCCHHHHHhhhCCCcEEEecCceeeeeEEE----e----e---------C-------------------CCcchHH
Q 038855 88 IMSASLDARGFSEYFGCAKAVHVQGRQFPVEILY----T----L---------Y-------------------PEPDFLD 131 (260)
Q Consensus 88 l~SATl~~~~~~~~~~~~~~v~v~~~~~~v~~~~----~----~---------~-------------------~~~~~~~ 131 (260)
++++|++...|-.++-..+..++++..++++.++ . . + ..-...+
T Consensus 552 ~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~E 631 (1282)
T KOG0921|consen 552 VHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIE 631 (1282)
T ss_pred eccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHHHH
Confidence 9999999988776655556666665554433211 0 0 0 1123444
Q ss_pred HHHHHHHH------HHhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCC
Q 038855 132 ATLITIFQ------VHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGF 205 (260)
Q Consensus 132 ~~~~~l~~------i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~ 205 (260)
+.+..+.. +.--..++..|+||+++.-.-.....+... ..++. ....+.+.|......+.+.+++....+.
T Consensus 632 al~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y-~ilp~--Hsq~~~~eqrkvf~~~p~gv~kii~stn 708 (1282)
T KOG0921|consen 632 ALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKY-EILPL--HSQLTSQEQRKVFEPVPEGVTKIILSTN 708 (1282)
T ss_pred HHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhc-ccccc--hhhcccHhhhhccCcccccccccccccc
Confidence 44443332 222245778999999999888777776552 22221 3567888999999999999999999999
Q ss_pred eEEEEecCcccccCCCCCceEEEeCCCccceeeecCCCceeeeEEeeehhhhhcC
Q 038855 206 RKVILATNIAETSVTIPGIKYVIDPGFVKARSYDPVKGMESLIVVPISKAQALQR 260 (260)
Q Consensus 206 ~kVlvaTdiae~gidIp~V~~VId~g~~~~~~yd~~~g~~~l~~~~isk~~~~qR 260 (260)
+++...|..+++.+.+..+.+|++++--+....-...-++...+.|-++-.-.||
T Consensus 709 iaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR 763 (1282)
T KOG0921|consen 709 IAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVR 763 (1282)
T ss_pred eeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceec
Confidence 9999999999999999999999999988886443333455555556555544444
No 137
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=96.76 E-value=0.0013 Score=53.72 Aligned_cols=16 Identities=50% Similarity=0.779 Sum_probs=13.2
Q ss_pred CCCcccEEEEecCCcC
Q 038855 7 YLSRYSVIIVDEAHER 22 (260)
Q Consensus 7 ~L~~~~~vIlDEaher 22 (260)
.+.++++||+||+|..
T Consensus 116 ~~~~~~~iViDE~h~l 131 (169)
T PF00270_consen 116 NISRLSLIVIDEAHHL 131 (169)
T ss_dssp TGTTESEEEEETHHHH
T ss_pred ccccceeeccCccccc
Confidence 4566999999999963
No 138
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=96.74 E-value=0.011 Score=62.71 Aligned_cols=122 Identities=19% Similarity=0.104 Sum_probs=76.5
Q ss_pred eEEEEeccCC--HHHHHhhhCCCcEEEecCceeeeeEEEee----CCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHH
Q 038855 85 KLIIMSASLD--ARGFSEYFGCAKAVHVQGRQFPVEILYTL----YPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEE 158 (260)
Q Consensus 85 qlil~SATl~--~~~~~~~~~~~~~v~v~~~~~~v~~~~~~----~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ 158 (260)
++..|+.|.. ...|.+.+ +-.++.+|.. .|+.-.-.. ......+.+.+..+...+.. +-||||-+.+.+.
T Consensus 376 kLsGMTGTa~te~~Ef~~iY-~l~Vv~IPTn-kP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~--GrPVLIgT~SVe~ 451 (939)
T PRK12902 376 KLAGMTGTAKTEEVEFEKTY-KLEVTVIPTN-RPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQ--GRPVLVGTTSVEK 451 (939)
T ss_pred hhcccCCCCHHHHHHHHHHh-CCcEEEcCCC-CCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhC--CCCEEEeeCCHHH
Confidence 5778888872 33455544 3556777654 232211111 11223445555555555543 5689999999999
Q ss_pred HHHHHHHHHHHHhcCccCCCCeEEEEecCC-CC-HHHHHHHhcccCCCCeEEEEecCcccccCCC
Q 038855 159 IESVERLVQERLLQLPEASRKLVTVPIFSS-LP-SEQQMKVFAPAAAGFRKVILATNIAETSVTI 221 (260)
Q Consensus 159 ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~-l~-~~~r~~v~~~~~~g~~kVlvaTdiae~gidI 221 (260)
-|.+.+.|.+ .+++.-.|... .. ..+-.-+-++-++ -.|.||||+|.||.||
T Consensus 452 SE~ls~~L~~---------~gi~h~vLNAk~~~~~~EA~IIa~AG~~--GaVTIATNMAGRGTDI 505 (939)
T PRK12902 452 SELLSALLQE---------QGIPHNLLNAKPENVEREAEIVAQAGRK--GAVTIATNMAGRGTDI 505 (939)
T ss_pred HHHHHHHHHH---------cCCchheeeCCCcchHhHHHHHHhcCCC--CcEEEeccCCCCCcCE
Confidence 9999999988 48887778775 22 2333323333333 3599999999999998
No 139
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=96.66 E-value=0.012 Score=63.33 Aligned_cols=139 Identities=21% Similarity=0.213 Sum_probs=91.4
Q ss_pred eEEEEeccCC--HHHHHhhhCCCcEEEecCceeeeeEE----EeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHH
Q 038855 85 KLIIMSASLD--ARGFSEYFGCAKAVHVQGRQFPVEIL----YTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEE 158 (260)
Q Consensus 85 qlil~SATl~--~~~~~~~~~~~~~v~v~~~~~~v~~~----~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ 158 (260)
++-.|+.|.. ...|.+.++ -.++.+|.. .|+.-. .+.......+.+.+..+..++.. +-|+||-+.+.+.
T Consensus 565 kLsGMTGTA~tea~Ef~~IY~-L~Vv~IPTn-rP~~R~D~~D~vy~t~~eK~~Aii~ei~~~~~~--GrPVLVGT~SVe~ 640 (1112)
T PRK12901 565 KLAGMTGTAETEAGEFWDIYK-LDVVVIPTN-RPIARKDKEDLVYKTKREKYNAVIEEITELSEA--GRPVLVGTTSVEI 640 (1112)
T ss_pred hhcccCCCCHHHHHHHHHHhC-CCEEECCCC-CCcceecCCCeEecCHHHHHHHHHHHHHHHHHC--CCCEEEEeCcHHH
Confidence 5778888873 334555443 456777654 232211 11112233455666666666653 5689999999999
Q ss_pred HHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCC--------CceEEEeC
Q 038855 159 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIP--------GIKYVIDP 230 (260)
Q Consensus 159 ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp--------~V~~VId~ 230 (260)
-|.+.+.|.. .+++.-.|.+.....+-.-+-++-.+| .|-||||+|.||.||. |==|||-+
T Consensus 641 SE~lS~~L~~---------~gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAGRGTDIkLg~~V~e~GGL~VIgT 709 (1112)
T PRK12901 641 SELLSRMLKM---------RKIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAGRGTDIKLSPEVKAAGGLAIIGT 709 (1112)
T ss_pred HHHHHHHHHH---------cCCcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCcCCCcCcccchhhHHcCCCEEEEc
Confidence 9999999988 477776776665555555444444444 4899999999999995 34588888
Q ss_pred CCccceee
Q 038855 231 GFVKARSY 238 (260)
Q Consensus 231 g~~~~~~y 238 (260)
..+..+.-
T Consensus 710 erheSrRI 717 (1112)
T PRK12901 710 ERHESRRV 717 (1112)
T ss_pred cCCCcHHH
Confidence 77775443
No 140
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=96.36 E-value=0.0054 Score=52.19 Aligned_cols=16 Identities=31% Similarity=0.436 Sum_probs=13.6
Q ss_pred CCCCcccEEEEecCCc
Q 038855 6 PYLSRYSVIIVDEAHE 21 (260)
Q Consensus 6 ~~L~~~~~vIlDEahe 21 (260)
..+.+++++|+||+|.
T Consensus 139 ~~~~~l~~lIvDE~h~ 154 (203)
T cd00268 139 LDLSKVKYLVLDEADR 154 (203)
T ss_pred CChhhCCEEEEeChHH
Confidence 3567899999999996
No 141
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.33 E-value=0.0029 Score=53.77 Aligned_cols=88 Identities=24% Similarity=0.383 Sum_probs=59.7
Q ss_pred cCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC--cccccCCC
Q 038855 144 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN--IAETSVTI 221 (260)
Q Consensus 144 ~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd--iae~gidI 221 (260)
..+|.+|||+|+.+.++.+.+.+...... .++.+..- ...++.++++.|+.+..-||+|+. -..-|||+
T Consensus 7 ~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~-----~~~~v~~q----~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~ 77 (167)
T PF13307_consen 7 AVPGGVLVFFPSYRRLEKVYERLKERLEE-----KGIPVFVQ----GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDF 77 (167)
T ss_dssp CCSSEEEEEESSHHHHHHHHTT-TSS-E------ETSCEEES----TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhhccc-----ccceeeec----CcchHHHHHHHHHhccCeEEEEEecccEEEeecC
Confidence 45799999999999999999888763210 12222222 355677788899999999999998 88889999
Q ss_pred CC--ceEEEeCCCccceeeec
Q 038855 222 PG--IKYVIDPGFVKARSYDP 240 (260)
Q Consensus 222 p~--V~~VId~g~~~~~~yd~ 240 (260)
|+ .+.||=.|+|...-.||
T Consensus 78 ~~~~~r~vii~glPfp~~~d~ 98 (167)
T PF13307_consen 78 PGDLLRAVIIVGLPFPPPSDP 98 (167)
T ss_dssp ECESEEEEEEES-----TTCH
T ss_pred CCchhheeeecCCCCCCCCCH
Confidence 96 88999999997554443
No 142
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.80 E-value=0.048 Score=56.24 Aligned_cols=79 Identities=14% Similarity=0.167 Sum_probs=67.4
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC-cccccCCCCC
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN-IAETSVTIPG 223 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd-iae~gidIp~ 223 (260)
...+++|.+||++=+.+.++.+++.+.. -++.+..+||+++..+|.++++....|...|+|+|. .....+...+
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~-----~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~ 383 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEP-----LGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHN 383 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhh-----cCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcc
Confidence 4568999999999999999999987653 268899999999999999999999999999999997 3444566788
Q ss_pred ceEEE
Q 038855 224 IKYVI 228 (260)
Q Consensus 224 V~~VI 228 (260)
+.+||
T Consensus 384 l~lvV 388 (681)
T PRK10917 384 LGLVI 388 (681)
T ss_pred cceEE
Confidence 88877
No 143
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=95.45 E-value=0.12 Score=53.35 Aligned_cols=96 Identities=19% Similarity=0.158 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCC----C
Q 038855 129 FLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAA----G 204 (260)
Q Consensus 129 ~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~----g 204 (260)
|.+.....+..+... ..|.+||-+++...++.+++.|...+ .+ -+.+.|..+. +...++.|++ |
T Consensus 454 ~~~~~~~~~~~~~~~-~~G~~lvLfTS~~~~~~~~~~l~~~l--------~~-~~l~qg~~~~--~~~l~~~f~~~~~~~ 521 (636)
T TIGR03117 454 WLENVSLSTAAILRK-AQGGTLVLTTAFSHISAIGQLVELGI--------PA-EIVIQSEKNR--LASAEQQFLALYANG 521 (636)
T ss_pred HHHHHHHHHHHHHHH-cCCCEEEEechHHHHHHHHHHHHhhc--------CC-CEEEeCCCcc--HHHHHHHHHHhhcCC
Confidence 444456666665543 47899999999999999999998743 22 3455665532 2234444543 5
Q ss_pred CeEEEEecCcccccCCC----------CCceEEEeCCCccce
Q 038855 205 FRKVILATNIAETSVTI----------PGIKYVIDPGFVKAR 236 (260)
Q Consensus 205 ~~kVlvaTdiae~gidI----------p~V~~VId~g~~~~~ 236 (260)
..-||++|+-+--|||+ +.+++||=.-+|..+
T Consensus 522 ~~~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~ 563 (636)
T TIGR03117 522 IQPVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGL 563 (636)
T ss_pred CCcEEEeCCccccccccCCccCCCCCCCcccEEEEEeCCCCc
Confidence 78999999999999999 248888877777653
No 144
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=95.38 E-value=0.073 Score=53.61 Aligned_cols=104 Identities=20% Similarity=0.227 Sum_probs=80.2
Q ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCC-C-eEEEEecCcccccCC
Q 038855 143 DEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAG-F-RKVILATNIAETSVT 220 (260)
Q Consensus 143 ~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g-~-~kVlvaTdiae~gid 220 (260)
+..+.+.|||+.-..-.+.+...+.+ +++..+.|-|+-++..|.-.-+.|... . +--+++--.|..|+|
T Consensus 489 d~~~~KflVFaHH~~vLd~Iq~~~~~---------r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt 559 (689)
T KOG1000|consen 489 DAPPRKFLVFAHHQIVLDTIQVEVNK---------RKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLT 559 (689)
T ss_pred cCCCceEEEEehhHHHHHHHHHHHHH---------cCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeeccccee
Confidence 45577999999999999999888888 599999999999999999999999743 3 334566667889999
Q ss_pred CCCceEEEeCCCccceeee-------cCCCceeee--EEeeehh
Q 038855 221 IPGIKYVIDPGFVKARSYD-------PVKGMESLI--VVPISKA 255 (260)
Q Consensus 221 Ip~V~~VId~g~~~~~~yd-------~~~g~~~l~--~~~isk~ 255 (260)
....+.||=..++..+.|- |+.|-.+.+ ..-+-|.
T Consensus 560 ~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKg 603 (689)
T KOG1000|consen 560 LTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKG 603 (689)
T ss_pred eeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecC
Confidence 9999999966666655443 677765533 3334443
No 145
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.37 E-value=0.073 Score=57.24 Aligned_cols=82 Identities=12% Similarity=0.175 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEE
Q 038855 130 LDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVI 209 (260)
Q Consensus 130 ~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVl 209 (260)
...++..++.++....++.+++.+||..=+.++++.|+++..+.. .-...++ +||.|+..+++++++.+..|-..|+
T Consensus 109 GKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~--~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIl 185 (1187)
T COG1110 109 GKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAG--SLDVLVV-YHSALPTKEKEEALERIESGDFDIL 185 (1187)
T ss_pred chhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcC--Ccceeee-eccccchHHHHHHHHHHhcCCccEE
Confidence 356777888888887788999999999999999999999865433 2344455 9999999999999999999999999
Q ss_pred EecCc
Q 038855 210 LATNI 214 (260)
Q Consensus 210 vaTdi 214 (260)
|+|+-
T Consensus 186 itTs~ 190 (1187)
T COG1110 186 ITTSQ 190 (1187)
T ss_pred EEeHH
Confidence 99974
No 146
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=95.29 E-value=0.03 Score=47.74 Aligned_cols=30 Identities=33% Similarity=0.481 Sum_probs=17.9
Q ss_pred CCCcccEEEEecCCcCCcchhHHHHHHHHH
Q 038855 7 YLSRYSVIIVDEAHERTVHTDVLLGLLKKV 36 (260)
Q Consensus 7 ~L~~~~~vIlDEaher~~~~d~ll~~lk~~ 36 (260)
.+.+|++||+||+|--+...=...++++..
T Consensus 92 ~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~ 121 (148)
T PF07652_consen 92 RLKNYDVIIMDECHFTDPTSIAARGYLREL 121 (148)
T ss_dssp CTTS-SEEEECTTT--SHHHHHHHHHHHHH
T ss_pred cccCccEEEEeccccCCHHHHhhheeHHHh
Confidence 367999999999996544443344445444
No 147
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.11 E-value=0.03 Score=45.49 Aligned_cols=17 Identities=41% Similarity=0.540 Sum_probs=13.3
Q ss_pred CCCcccEEEEecCCcCC
Q 038855 7 YLSRYSVIIVDEAHERT 23 (260)
Q Consensus 7 ~L~~~~~vIlDEaher~ 23 (260)
...+++++|+||+|...
T Consensus 126 ~~~~~~~iIiDE~h~~~ 142 (201)
T smart00487 126 ELSNVDLVILDEAHRLL 142 (201)
T ss_pred CHhHCCEEEEECHHHHh
Confidence 34578899999999644
No 148
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.08 E-value=0.067 Score=55.31 Aligned_cols=74 Identities=15% Similarity=0.187 Sum_probs=62.6
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCce
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIK 225 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~ 225 (260)
++++||.+|+++-+.++.+.+++.+ +..+..+||+++..+|.+.+.....|..+|+|+|.-+- -+.+.++.
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~f--------g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~ 260 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARF--------GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLG 260 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh--------CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCC
Confidence 5689999999999999999998764 45799999999999999999888889999999997543 35567888
Q ss_pred EEE
Q 038855 226 YVI 228 (260)
Q Consensus 226 ~VI 228 (260)
+||
T Consensus 261 liV 263 (679)
T PRK05580 261 LII 263 (679)
T ss_pred EEE
Confidence 777
No 149
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=94.93 E-value=0.19 Score=50.22 Aligned_cols=72 Identities=13% Similarity=0.294 Sum_probs=58.9
Q ss_pred EEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC-----ccccc-CCCC
Q 038855 149 ILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN-----IAETS-VTIP 222 (260)
Q Consensus 149 iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd-----iae~g-idIp 222 (260)
.||++||++-+.++++.+....... .++.++.++|+.+...|...++. | ..|||||+ ..+++ ++..
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~----~~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVaTPGRllD~i~~~~l~l~ 173 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNL----GGLRVAVVYGGVSIRKQIEALKR---G-VDIVVATPGRLLDLIKRGKLDLS 173 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhc----CCccEEEEECCCCHHHHHHHHhc---C-CCEEEECccHHHHHHHcCCcchh
Confidence 9999999999999999999875432 16789999999999988877665 5 78999997 45555 7777
Q ss_pred CceEEE
Q 038855 223 GIKYVI 228 (260)
Q Consensus 223 ~V~~VI 228 (260)
.|.++|
T Consensus 174 ~v~~lV 179 (513)
T COG0513 174 GVETLV 179 (513)
T ss_pred hcCEEE
Confidence 888776
No 150
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=94.83 E-value=0.15 Score=54.71 Aligned_cols=79 Identities=11% Similarity=0.177 Sum_probs=66.1
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC-cccccCCCCC
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN-IAETSVTIPG 223 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd-iae~gidIp~ 223 (260)
...+++|.+||.+=+.+.++.+++++... ++.+..++|..+..++.++++..+.|...|||+|+ +....+.+.+
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~-----~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~ 573 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANF-----PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKD 573 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccC-----CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCccc
Confidence 35789999999999999999999876532 56788999999999999999999999999999998 3344567778
Q ss_pred ceEEE
Q 038855 224 IKYVI 228 (260)
Q Consensus 224 V~~VI 228 (260)
+.+||
T Consensus 574 L~llV 578 (926)
T TIGR00580 574 LGLLI 578 (926)
T ss_pred CCEEE
Confidence 88776
No 151
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=94.72 E-value=0.035 Score=42.33 Aligned_cols=14 Identities=43% Similarity=0.828 Sum_probs=12.1
Q ss_pred CCcccEEEEecCCc
Q 038855 8 LSRYSVIIVDEAHE 21 (260)
Q Consensus 8 L~~~~~vIlDEahe 21 (260)
..++++||+||+|.
T Consensus 101 ~~~~~~iiiDE~h~ 114 (144)
T cd00046 101 LKKLDLLILDEAHR 114 (144)
T ss_pred hhcCCEEEEeCHHH
Confidence 45789999999995
No 152
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.64 E-value=0.092 Score=52.47 Aligned_cols=74 Identities=14% Similarity=0.183 Sum_probs=62.2
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCce
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIK 225 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~ 225 (260)
++++||.+|+.+-+.++++.+++.+ +..+..+||+++..+|.+.+.....|..+|+|+|.-+- -..+.++.
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f--------~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal-f~p~~~l~ 95 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRF--------GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL-FLPFKNLG 95 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh--------CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH-cCcccCCC
Confidence 5689999999999999999998864 44688899999999999999888889999999997543 34567888
Q ss_pred EEE
Q 038855 226 YVI 228 (260)
Q Consensus 226 ~VI 228 (260)
+||
T Consensus 96 lII 98 (505)
T TIGR00595 96 LII 98 (505)
T ss_pred EEE
Confidence 776
No 153
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.42 E-value=0.2 Score=51.15 Aligned_cols=79 Identities=14% Similarity=0.137 Sum_probs=65.6
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCccc-ccCCCCC
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAE-TSVTIPG 223 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae-~gidIp~ 223 (260)
...+++|-+||++=+.+.++.+++.+.. -++.+..+||+++..+|...++....|...|+|+|.-.= ..+...+
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~-----~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~ 357 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAP-----LGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKR 357 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcc-----cCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccc
Confidence 4568999999999999999999987643 268999999999999999999999999999999997432 2355667
Q ss_pred ceEEE
Q 038855 224 IKYVI 228 (260)
Q Consensus 224 V~~VI 228 (260)
+.+||
T Consensus 358 l~lvV 362 (630)
T TIGR00643 358 LALVI 362 (630)
T ss_pred cceEE
Confidence 77776
No 154
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=93.83 E-value=1.4 Score=46.86 Aligned_cols=64 Identities=19% Similarity=0.118 Sum_probs=49.3
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCC
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPG 223 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~ 223 (260)
.+.+|-||+.|....+.+++..... ...+..+.|.-+.++ + +.+ +..+|++=|++...|+++..
T Consensus 281 ~gknIcvfsSt~~~~~~v~~~~~~~---------~~~Vl~l~s~~~~~d---v-~~W--~~~~VviYT~~itvG~Sf~~ 344 (824)
T PF02399_consen 281 AGKNICVFSSTVSFAEIVARFCARF---------TKKVLVLNSTDKLED---V-ESW--KKYDVVIYTPVITVGLSFEE 344 (824)
T ss_pred CCCcEEEEeChHHHHHHHHHHHHhc---------CCeEEEEcCCCCccc---c-ccc--cceeEEEEeceEEEEeccch
Confidence 3668889999999999888888773 556777777666652 2 223 47889999999999999964
No 155
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=93.11 E-value=0.72 Score=47.43 Aligned_cols=76 Identities=12% Similarity=0.208 Sum_probs=56.8
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC-----cccc-c
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN-----IAET-S 218 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd-----iae~-g 218 (260)
....+||.+||++-+.++++.+..+.... .++.++.+||+.+.+.+.+.+. ....|||+|+ ...+ .
T Consensus 73 ~~~~~LIL~PTreLa~Qv~~~l~~~~~~~----~~i~v~~~~gG~~~~~q~~~l~----~~~~IVVgTPgrl~d~l~r~~ 144 (629)
T PRK11634 73 KAPQILVLAPTRELAVQVAEAMTDFSKHM----RGVNVVALYGGQRYDVQLRALR----QGPQIVVGTPGRLLDHLKRGT 144 (629)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHHhhc----CCceEEEEECCcCHHHHHHHhc----CCCCEEEECHHHHHHHHHcCC
Confidence 34579999999999999999888765432 3788999999998887766654 2357999995 3333 3
Q ss_pred CCCCCceEEE
Q 038855 219 VTIPGIKYVI 228 (260)
Q Consensus 219 idIp~V~~VI 228 (260)
+++.++++||
T Consensus 145 l~l~~l~~lV 154 (629)
T PRK11634 145 LDLSKLSGLV 154 (629)
T ss_pred cchhhceEEE
Confidence 5677887766
No 156
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=92.78 E-value=0.87 Score=44.28 Aligned_cols=75 Identities=11% Similarity=0.190 Sum_probs=56.8
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC-----ccc-ccC
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN-----IAE-TSV 219 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd-----iae-~gi 219 (260)
...+||.+||++-+.++++.++.+.... .++.+..++|+.+...+.+.++ ....|+|+|+ ... ..+
T Consensus 72 ~~~~lil~PtreLa~Q~~~~~~~~~~~~----~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~ 143 (460)
T PRK11776 72 RVQALVLCPTRELADQVAKEIRRLARFI----PNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTL 143 (460)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhC----CCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCc
Confidence 3468999999999999999888764321 3678999999999988776665 3457999994 333 346
Q ss_pred CCCCceEEE
Q 038855 220 TIPGIKYVI 228 (260)
Q Consensus 220 dIp~V~~VI 228 (260)
++.++++||
T Consensus 144 ~l~~l~~lV 152 (460)
T PRK11776 144 DLDALNTLV 152 (460)
T ss_pred cHHHCCEEE
Confidence 777888876
No 157
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=92.66 E-value=1.3 Score=37.46 Aligned_cols=75 Identities=13% Similarity=0.219 Sum_probs=55.2
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCc-----c-ccc
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNI-----A-ETS 218 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdi-----a-e~g 218 (260)
..+.+||.+|+.+-+.+..+.+...... .+..+..++|+.+.....+.+. +...|+|+|+- . ..-
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~ 138 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKH-----TNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGK 138 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhcc-----CCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCC
Confidence 4567999999999999999988886432 3678889999999887766654 44579999952 2 222
Q ss_pred CCCCCceEEE
Q 038855 219 VTIPGIKYVI 228 (260)
Q Consensus 219 idIp~V~~VI 228 (260)
..+++++++|
T Consensus 139 ~~~~~l~~lI 148 (203)
T cd00268 139 LDLSKVKYLV 148 (203)
T ss_pred CChhhCCEEE
Confidence 4566777765
No 158
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=92.57 E-value=0.43 Score=50.54 Aligned_cols=140 Identities=21% Similarity=0.213 Sum_probs=79.1
Q ss_pred eEEEEeccCCH--HHHHhhhCCCcEEEecCceeeeeEEE---e-eCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHH
Q 038855 85 KLIIMSASLDA--RGFSEYFGCAKAVHVQGRQFPVEILY---T-LYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEE 158 (260)
Q Consensus 85 qlil~SATl~~--~~~~~~~~~~~~v~v~~~~~~v~~~~---~-~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ 158 (260)
++..|+.|.+. ..|.++++ -.++.++.. .|+.-.- . .......+.+.+..+...+. .+.|+||-..+.+.
T Consensus 366 kl~gmTGTa~te~~EF~~iY~-l~vv~iPTn-rp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~--~gqPvLvgT~sie~ 441 (822)
T COG0653 366 KLAGMTGTADTEEEEFDVIYG-LDVVVIPTN-RPIIRLDEPDLVYKTEEEKFKAIVEDIKERHE--KGQPVLVGTVSIEK 441 (822)
T ss_pred hhcCCCCcchhhhhhhhhccC-CceeeccCC-CcccCCCCccccccchHHHHHHHHHHHHHHHh--cCCCEEEcCcceec
Confidence 46677777643 34555554 234444433 1221000 0 00112223344444444444 36789999999999
Q ss_pred HHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCC---Cce--------EE
Q 038855 159 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIP---GIK--------YV 227 (260)
Q Consensus 159 ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp---~V~--------~V 227 (260)
-|.+.+.|.+. +++...|-..-...+-..+-.+.+.| -|-||||+|.||-||- ++. ||
T Consensus 442 SE~ls~~L~~~---------~i~h~VLNAk~h~~EA~Iia~AG~~g--aVTiATNMAGRGTDIkLg~~~~~V~~lGGL~V 510 (822)
T COG0653 442 SELLSKLLRKA---------GIPHNVLNAKNHAREAEIIAQAGQPG--AVTIATNMAGRGTDIKLGGNPEFVMELGGLHV 510 (822)
T ss_pred chhHHHHHHhc---------CCCceeeccccHHHHHHHHhhcCCCC--ccccccccccCCcccccCCCHHHHHHhCCcEE
Confidence 99999999873 66655554444444444343333333 4789999999999993 332 56
Q ss_pred EeCCCccceeee
Q 038855 228 IDPGFVKARSYD 239 (260)
Q Consensus 228 Id~g~~~~~~yd 239 (260)
|-+..-+.+..|
T Consensus 511 IgTERhESRRID 522 (822)
T COG0653 511 IGTERHESRRID 522 (822)
T ss_pred EecccchhhHHH
Confidence 666555544444
No 159
>PRK14873 primosome assembly protein PriA; Provisional
Probab=92.51 E-value=0.27 Score=50.91 Aligned_cols=75 Identities=15% Similarity=0.195 Sum_probs=62.1
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCce
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIK 225 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~ 225 (260)
++++||-+|....+..+.+.++++++ .-.++.+||+++..+|.+.+.....|..+|+|-|=-| --.-+++..
T Consensus 188 Gk~vLvLvPEi~lt~q~~~rl~~~f~-------~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA-vFaP~~~Lg 259 (665)
T PRK14873 188 GRGALVVVPDQRDVDRLEAALRALLG-------AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA-VFAPVEDLG 259 (665)
T ss_pred CCeEEEEecchhhHHHHHHHHHHHcC-------CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee-EEeccCCCC
Confidence 66899999999999999999998752 2468889999999999999999999999999988643 234556666
Q ss_pred EEE
Q 038855 226 YVI 228 (260)
Q Consensus 226 ~VI 228 (260)
.||
T Consensus 260 LII 262 (665)
T PRK14873 260 LVA 262 (665)
T ss_pred EEE
Confidence 665
No 160
>PRK10689 transcription-repair coupling factor; Provisional
Probab=92.50 E-value=0.59 Score=51.33 Aligned_cols=79 Identities=13% Similarity=0.175 Sum_probs=64.4
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC-cccccCCCCC
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN-IAETSVTIPG 223 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd-iae~gidIp~ 223 (260)
...+++|-+||++-+.++++.+++++... ++.+..++|..+..++.++++..+.|...|+|+|+ +....+...+
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~-----~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~ 722 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANW-----PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKD 722 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccC-----CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhh
Confidence 46789999999999999999998865432 56788899999999999999888888899999997 3444566677
Q ss_pred ceEEE
Q 038855 224 IKYVI 228 (260)
Q Consensus 224 V~~VI 228 (260)
+.+||
T Consensus 723 L~lLV 727 (1147)
T PRK10689 723 LGLLI 727 (1147)
T ss_pred CCEEE
Confidence 87765
No 161
>PRK14701 reverse gyrase; Provisional
Probab=92.49 E-value=0.53 Score=53.43 Aligned_cols=67 Identities=9% Similarity=0.052 Sum_probs=56.2
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCc
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNI 214 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdi 214 (260)
....+||.+||++=+.++.+.++....... .++.++.+||+++..++.++++.++.|...|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~---~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKAN---LDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcC---CceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 345899999999999999999988654321 2578899999999999999888888888899999973
No 162
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=92.42 E-value=0.28 Score=50.11 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=50.0
Q ss_pred EEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC
Q 038855 149 ILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN 213 (260)
Q Consensus 149 iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd 213 (260)
.|||.||++-+.++...|...+. ..++.+..|.|+|....|.+++.. ...|+|||+
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~-----~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAE-----KTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhcc-----ccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 69999999999999999988754 369999999999999999999876 457999998
No 163
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=91.73 E-value=1 Score=49.63 Aligned_cols=77 Identities=16% Similarity=0.269 Sum_probs=66.1
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCC-CeE-EEEecCcccccCCCCC
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAG-FRK-VILATNIAETSVTIPG 223 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g-~~k-VlvaTdiae~gidIp~ 223 (260)
...+||||.=+..++.|++-|-+.. ...+....+-|+.+...|+++.+.|.++ ... .|++|-+..-|+...|
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k~~------mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTG 1413 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFKKY------MPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTG 1413 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhhhh------cCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCC
Confidence 4579999999999999999886632 2466777899999999999999999987 444 5689999999999999
Q ss_pred ceEEE
Q 038855 224 IKYVI 228 (260)
Q Consensus 224 V~~VI 228 (260)
.+.||
T Consensus 1414 ADTVV 1418 (1549)
T KOG0392|consen 1414 ADTVV 1418 (1549)
T ss_pred CceEE
Confidence 99998
No 164
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=91.38 E-value=0.99 Score=43.42 Aligned_cols=74 Identities=20% Similarity=0.269 Sum_probs=55.3
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC------cccccC
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN------IAETSV 219 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd------iae~gi 219 (260)
+..+||.+||++-+.++++.+..+... .++.+..++|+.+...+...+. +...|||||+ +....+
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~l~~~-----~~~~v~~~~gg~~~~~~~~~l~----~~~~IlV~Tp~rl~~~~~~~~~ 143 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARELAKH-----THLDIATITGGVAYMNHAEVFS----ENQDIVVATPGRLLQYIKEENF 143 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHHcc-----CCcEEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCc
Confidence 457999999999999999888876432 3678999999999988877764 3457999997 122345
Q ss_pred CCCCceEEE
Q 038855 220 TIPGIKYVI 228 (260)
Q Consensus 220 dIp~V~~VI 228 (260)
+..++++||
T Consensus 144 ~~~~v~~lV 152 (434)
T PRK11192 144 DCRAVETLI 152 (434)
T ss_pred CcccCCEEE
Confidence 556666655
No 165
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=91.11 E-value=0.43 Score=50.03 Aligned_cols=14 Identities=50% Similarity=0.890 Sum_probs=13.0
Q ss_pred CCcccEEEEecCCc
Q 038855 8 LSRYSVIIVDEAHE 21 (260)
Q Consensus 8 L~~~~~vIlDEahe 21 (260)
|+.++++|+||||.
T Consensus 177 ls~fs~iv~DE~Hr 190 (746)
T KOG0354|consen 177 LSDFSLIVFDECHR 190 (746)
T ss_pred cceEEEEEEccccc
Confidence 88899999999994
No 166
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=90.52 E-value=0.94 Score=49.92 Aligned_cols=68 Identities=10% Similarity=0.109 Sum_probs=53.1
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCc
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNI 214 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdi 214 (260)
...++||.+||++-+.++++.+.+...... .....+..+||+++..+|.+.++.+.+|...|||+|+-
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~--i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAG--VGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTM 187 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcC--CceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 357899999999999999999988754211 01122456899999999988888888888899999973
No 167
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=90.04 E-value=0.84 Score=48.26 Aligned_cols=87 Identities=13% Similarity=0.226 Sum_probs=74.0
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCC--eEEEEecCcccccCCCCC
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGF--RKVILATNIAETSVTIPG 223 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~--~kVlvaTdiae~gidIp~ 223 (260)
+..+|+|-.++.-++-++..|... .++.++.+-|.-+...|..+...|.++. .-.|++|-+...|+++-+
T Consensus 546 g~rvllFsqs~~mLdilE~fL~~~--------~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTg 617 (923)
T KOG0387|consen 546 GDRVLLFSQSRQMLDILESFLRRA--------KGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTG 617 (923)
T ss_pred CCEEEEehhHHHHHHHHHHHHHhc--------CCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEeccccccccccc
Confidence 568999999999999998888852 5999999999999999999999998664 557899999999999999
Q ss_pred ceEEEeCCCccceeeecCCCc
Q 038855 224 IKYVIDPGFVKARSYDPVKGM 244 (260)
Q Consensus 224 V~~VId~g~~~~~~yd~~~g~ 244 (260)
..-||=++ +.|||.+.+
T Consensus 618 AnRVIIfD----PdWNPStD~ 634 (923)
T KOG0387|consen 618 ANRVIIFD----PDWNPSTDN 634 (923)
T ss_pred CceEEEEC----CCCCCccch
Confidence 98887442 457777765
No 168
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=90.02 E-value=1.6 Score=42.56 Aligned_cols=73 Identities=15% Similarity=0.215 Sum_probs=54.8
Q ss_pred CCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC------cccccCC
Q 038855 147 GDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN------IAETSVT 220 (260)
Q Consensus 147 g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd------iae~gid 220 (260)
..+||.+||++-+.++.+.++..... .++.+..++|+.+...+...+. +...|+|||+ +....++
T Consensus 76 ~~aLil~PtreLa~Qi~~~~~~~~~~-----~~~~~~~~~gg~~~~~~~~~l~----~~~~IiV~TP~rL~~~~~~~~~~ 146 (456)
T PRK10590 76 VRALILTPTRELAAQIGENVRDYSKY-----LNIRSLVVFGGVSINPQMMKLR----GGVDVLVATPGRLLDLEHQNAVK 146 (456)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhcc-----CCCEEEEEECCcCHHHHHHHHc----CCCcEEEEChHHHHHHHHcCCcc
Confidence 36899999999999999998876432 3678888999999887655442 4568999996 2344566
Q ss_pred CCCceEEE
Q 038855 221 IPGIKYVI 228 (260)
Q Consensus 221 Ip~V~~VI 228 (260)
+.++++||
T Consensus 147 l~~v~~lV 154 (456)
T PRK10590 147 LDQVEILV 154 (456)
T ss_pred cccceEEE
Confidence 77777765
No 169
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=89.18 E-value=2 Score=41.34 Aligned_cols=73 Identities=12% Similarity=0.146 Sum_probs=54.4
Q ss_pred CCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC------cccccCC
Q 038855 147 GDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN------IAETSVT 220 (260)
Q Consensus 147 g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd------iae~gid 220 (260)
..+||.+||++-+.++++.+..+... .++.+..++|+...+.+.+.++ ....|||+|+ +-...++
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~-----~~~~v~~~~gg~~~~~~~~~l~----~~~~IlV~TP~~l~~~l~~~~~~ 154 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQA-----TGLKLGLAYGGDGYDKQLKVLE----SGVDILIGTTGRLIDYAKQNHIN 154 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhcc-----CCceEEEEECCCCHHHHHHHhc----CCCCEEEECHHHHHHHHHcCCcc
Confidence 56899999999999998888776432 3678899999988777666553 2347999997 2234566
Q ss_pred CCCceEEE
Q 038855 221 IPGIKYVI 228 (260)
Q Consensus 221 Ip~V~~VI 228 (260)
+.++++||
T Consensus 155 l~~v~~lV 162 (423)
T PRK04837 155 LGAIQVVV 162 (423)
T ss_pred cccccEEE
Confidence 77777776
No 170
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=88.88 E-value=2.9 Score=42.41 Aligned_cols=96 Identities=21% Similarity=0.316 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhh-----cCCC-CEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCC
Q 038855 131 DATLITIFQVHLD-----EAPG-DILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAG 204 (260)
Q Consensus 131 ~~~~~~l~~i~~~-----~~~g-~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g 204 (260)
.-.+..+.++... ...+ .+||-+||++-+.++.+...+.... .++.+..++|+.+...|.+-++.-
T Consensus 144 ay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~-----~~~~~~cvyGG~~~~~Q~~~l~~g--- 215 (519)
T KOG0331|consen 144 AYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKS-----LRLRSTCVYGGAPKGPQLRDLERG--- 215 (519)
T ss_pred hhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCC-----CCccEEEEeCCCCccHHHHHHhcC---
Confidence 3345555555541 2223 4899999999999999999887432 357799999999999998877543
Q ss_pred CeEEEEecC-----ccc-ccCCCCCceEEE--------eCCCccc
Q 038855 205 FRKVILATN-----IAE-TSVTIPGIKYVI--------DPGFVKA 235 (260)
Q Consensus 205 ~~kVlvaTd-----iae-~gidIp~V~~VI--------d~g~~~~ 235 (260)
..|+|||+ +.+ ..++...++|+| |.||...
T Consensus 216 -vdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~q 259 (519)
T KOG0331|consen 216 -VDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQ 259 (519)
T ss_pred -CcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHH
Confidence 37999996 334 345566888876 6777664
No 171
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=88.08 E-value=1.8 Score=43.87 Aligned_cols=73 Identities=12% Similarity=0.119 Sum_probs=54.4
Q ss_pred CCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC-----cccc--cC
Q 038855 147 GDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN-----IAET--SV 219 (260)
Q Consensus 147 g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd-----iae~--gi 219 (260)
..+||.+||++-+.++++.+..+... .++.+..+||+.+...+.+.+. +...|||+|+ .+.+ .+
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~-----~~i~v~~l~Gg~~~~~q~~~l~----~~~dIiV~TP~rL~~~l~~~~~~ 155 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGAD-----LGLRFALVYGGVDYDKQRELLQ----QGVDVIIATPGRLIDYVKQHKVV 155 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhcc-----CCceEEEEECCCCHHHHHHHHh----CCCCEEEECHHHHHHHHHhcccc
Confidence 57999999999999999988876432 3678999999999888777664 2457999995 3332 35
Q ss_pred CCCCceEEE
Q 038855 220 TIPGIKYVI 228 (260)
Q Consensus 220 dIp~V~~VI 228 (260)
.+..+++||
T Consensus 156 ~l~~v~~lV 164 (572)
T PRK04537 156 SLHACEICV 164 (572)
T ss_pred chhheeeeE
Confidence 555666554
No 172
>PRK09401 reverse gyrase; Reviewed
Probab=87.62 E-value=2.9 Score=46.27 Aligned_cols=67 Identities=10% Similarity=0.086 Sum_probs=51.1
Q ss_pred cCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC
Q 038855 144 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN 213 (260)
Q Consensus 144 ~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd 213 (260)
...+++||.+||++=+.++++.++....... ....+...|++++..++.+..+.+..|...|+|+|+
T Consensus 121 ~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~---~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp 187 (1176)
T PRK09401 121 KKGKKSYIIFPTRLLVEQVVEKLEKFGEKVG---CGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTS 187 (1176)
T ss_pred hcCCeEEEEeccHHHHHHHHHHHHHHhhhcC---ceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECH
Confidence 3467899999999999999999998754321 133445567777777877777777778889999995
No 173
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=85.98 E-value=11 Score=30.26 Aligned_cols=75 Identities=9% Similarity=0.185 Sum_probs=52.8
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHH-HHHHHhcccCCCCeEEEEecCc------ccc
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSE-QQMKVFAPAAAGFRKVILATNI------AET 217 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~-~r~~v~~~~~~g~~kVlvaTdi------ae~ 217 (260)
..+.+++.+|+++-++.+.+.+...+.. .++.+..+|++.+.. +....+ .+...|+|+|+- ...
T Consensus 43 ~~~~~lii~P~~~l~~q~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilv~T~~~l~~~~~~~ 113 (169)
T PF00270_consen 43 KDARVLIIVPTRALAEQQFERLRKFFSN-----TNVRVVLLHGGQSISEDQREVL----SNQADILVTTPEQLLDLISNG 113 (169)
T ss_dssp SSSEEEEEESSHHHHHHHHHHHHHHTTT-----TTSSEEEESTTSCHHHHHHHHH----HTTSSEEEEEHHHHHHHHHTT
T ss_pred CCceEEEEeecccccccccccccccccc-----cccccccccccccccccccccc----cccccccccCcchhhcccccc
Confidence 4568999999999999999999887543 367888999999865 333333 345678888862 222
Q ss_pred cCCCCCceEEE
Q 038855 218 SVTIPGIKYVI 228 (260)
Q Consensus 218 gidIp~V~~VI 228 (260)
.+.+..+++||
T Consensus 114 ~~~~~~~~~iV 124 (169)
T PF00270_consen 114 KINISRLSLIV 124 (169)
T ss_dssp SSTGTTESEEE
T ss_pred ccccccceeec
Confidence 23455566665
No 174
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=85.69 E-value=2.8 Score=43.11 Aligned_cols=76 Identities=14% Similarity=0.180 Sum_probs=68.2
Q ss_pred CEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCC--CeEEEEecCcccccCCCCCce
Q 038855 148 DILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAG--FRKVILATNIAETSVTIPGIK 225 (260)
Q Consensus 148 ~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g--~~kVlvaTdiae~gidIp~V~ 225 (260)
++|||.+-..-.+.+...+... ++.++.++|+.+.++|...+..|.++ ....+++|-.+..|++.-..+
T Consensus 713 kvlifsq~t~~l~il~~~l~~~---------~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~ 783 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKAL---------GIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGAD 783 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhc---------CCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccc
Confidence 7999999999999999998883 57899999999999999999999875 667888899999999999999
Q ss_pred EEEeCCC
Q 038855 226 YVIDPGF 232 (260)
Q Consensus 226 ~VId~g~ 232 (260)
+||-+..
T Consensus 784 ~vi~~d~ 790 (866)
T COG0553 784 TVILFDP 790 (866)
T ss_pred eEEEecc
Confidence 9997764
No 175
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=85.63 E-value=7.6 Score=38.04 Aligned_cols=74 Identities=14% Similarity=0.194 Sum_probs=52.6
Q ss_pred CCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC------cccccCC
Q 038855 147 GDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN------IAETSVT 220 (260)
Q Consensus 147 g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd------iae~gid 220 (260)
..+||.+||++-+.++.+.++.+... .++.+..++|+.+...+.+.+. .+...|||+|+ .....+.
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~-----~~~~v~~~~gg~~~~~~~~~~~---~~~~~Iiv~TP~~Ll~~~~~~~~~ 234 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKY-----TGLNVMTFVGGMDFDKQLKQLE---ARFCDILVATPGRLLDFNQRGEVH 234 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhcc-----CCCEEEEEEccCChHHHHHHHh---CCCCCEEEECHHHHHHHHHcCCcc
Confidence 47899999999999999988876432 3678899999987766544432 34567999997 2223445
Q ss_pred CCCceEEE
Q 038855 221 IPGIKYVI 228 (260)
Q Consensus 221 Ip~V~~VI 228 (260)
+.++++||
T Consensus 235 l~~l~~lV 242 (475)
T PRK01297 235 LDMVEVMV 242 (475)
T ss_pred cccCceEE
Confidence 56666655
No 176
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.59 E-value=2.4 Score=41.56 Aligned_cols=60 Identities=22% Similarity=0.117 Sum_probs=51.8
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCc
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNI 214 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdi 214 (260)
.+.+||.+|+++=+....+.|+. .++.+..++|+.+.+++..++.....|..+|+++|+-
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~---------~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe 110 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKA---------SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPE 110 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHH---------cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 57899999999988877777765 3788999999999999999988888888999999973
No 177
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=85.33 E-value=2.8 Score=42.30 Aligned_cols=60 Identities=12% Similarity=0.087 Sum_probs=52.2
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN 213 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd 213 (260)
..|.++|..|+.+-+....+.|+.. ++.+..+||+++..++..++.....|..++++.|+
T Consensus 52 ~~g~~lVisPl~sL~~dq~~~l~~~---------gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tp 111 (591)
T TIGR01389 52 LKGLTVVISPLISLMKDQVDQLRAA---------GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAP 111 (591)
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECh
Confidence 3678999999999988877777763 78899999999999999999888889999998886
No 178
>PTZ00110 helicase; Provisional
Probab=84.81 E-value=2.9 Score=42.08 Aligned_cols=72 Identities=14% Similarity=0.253 Sum_probs=51.8
Q ss_pred CEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC-----ccccc-CCC
Q 038855 148 DILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN-----IAETS-VTI 221 (260)
Q Consensus 148 ~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd-----iae~g-idI 221 (260)
.+||.+||++-+.++.+.+.++... .++.+..++|+.+...+...+.. ...|||||+ ..+++ +.+
T Consensus 205 ~~LIL~PTreLa~Qi~~~~~~~~~~-----~~i~~~~~~gg~~~~~q~~~l~~----~~~IlVaTPgrL~d~l~~~~~~l 275 (545)
T PTZ00110 205 IVLVLAPTRELAEQIREQCNKFGAS-----SKIRNTVAYGGVPKRGQIYALRR----GVEILIACPGRLIDFLESNVTNL 275 (545)
T ss_pred EEEEECChHHHHHHHHHHHHHHhcc-----cCccEEEEeCCCCHHHHHHHHHc----CCCEEEECHHHHHHHHHcCCCCh
Confidence 4789999999999999888886432 36778889999988776655532 247999996 44433 455
Q ss_pred CCceEEE
Q 038855 222 PGIKYVI 228 (260)
Q Consensus 222 p~V~~VI 228 (260)
..+++||
T Consensus 276 ~~v~~lV 282 (545)
T PTZ00110 276 RRVTYLV 282 (545)
T ss_pred hhCcEEE
Confidence 6677655
No 179
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=83.91 E-value=3 Score=43.95 Aligned_cols=74 Identities=16% Similarity=0.236 Sum_probs=61.8
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCce
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIK 225 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~ 225 (260)
+.++||-+|-.+-...+...++.+. +..+..+||+|+..+|.........|..+|+|-|=-| --.-++++.
T Consensus 245 GkqvLvLVPEI~Ltpq~~~rf~~rF--------g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSA-lF~Pf~~LG 315 (730)
T COG1198 245 GKQVLVLVPEIALTPQLLARFKARF--------GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSA-LFLPFKNLG 315 (730)
T ss_pred CCEEEEEeccccchHHHHHHHHHHh--------CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechh-hcCchhhcc
Confidence 5689999999999999999998875 5689999999999999999999999999999977533 334556776
Q ss_pred EEE
Q 038855 226 YVI 228 (260)
Q Consensus 226 ~VI 228 (260)
.+|
T Consensus 316 LII 318 (730)
T COG1198 316 LII 318 (730)
T ss_pred EEE
Confidence 665
No 180
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=83.49 E-value=5.9 Score=44.20 Aligned_cols=88 Identities=18% Similarity=0.199 Sum_probs=68.8
Q ss_pred HHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCC--eEEEE
Q 038855 133 TLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGF--RKVIL 210 (260)
Q Consensus 133 ~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~--~kVlv 210 (260)
++..|++-++.+ +..+|||..-..-.+-++..|.- .++..+.|-|.-..|+|...++.|.+.. ...|+
T Consensus 1264 tLAiLLqQLk~e-ghRvLIfTQMtkmLDVLeqFLny---------HgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfIL 1333 (1958)
T KOG0391|consen 1264 TLAILLQQLKSE-GHRVLIFTQMTKMLDVLEQFLNY---------HGYLYVRLDGNTSVEQRQALMERFNADRRIFCFIL 1333 (1958)
T ss_pred HHHHHHHHHHhc-CceEEehhHHHHHHHHHHHHHhh---------cceEEEEecCCccHHHHHHHHHHhcCCCceEEEEE
Confidence 333344444433 66899998776666666666665 4999999999999999999999998765 45789
Q ss_pred ecCcccccCCCCCceEEEeC
Q 038855 211 ATNIAETSVTIPGIKYVIDP 230 (260)
Q Consensus 211 aTdiae~gidIp~V~~VId~ 230 (260)
+|---..||.+-+.+.||=+
T Consensus 1334 STrSggvGiNLtgADTVvFY 1353 (1958)
T KOG0391|consen 1334 STRSGGVGINLTGADTVVFY 1353 (1958)
T ss_pred eccCCccccccccCceEEEe
Confidence 99999999999999999933
No 181
>PRK13766 Hef nuclease; Provisional
Probab=83.42 E-value=12 Score=38.94 Aligned_cols=75 Identities=16% Similarity=0.264 Sum_probs=54.9
Q ss_pred cCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCc------ccc
Q 038855 144 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNI------AET 217 (260)
Q Consensus 144 ~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdi------ae~ 217 (260)
...+++||.+|+.+-+++..+.+++.+.. ....+..++|+.+..+|.+.+.. ..|+++|+- ...
T Consensus 56 ~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~-----~~~~v~~~~g~~~~~~r~~~~~~-----~~iiv~T~~~l~~~l~~~ 125 (773)
T PRK13766 56 KKGGKVLILAPTKPLVEQHAEFFRKFLNI-----PEEKIVVFTGEVSPEKRAELWEK-----AKVIVATPQVIENDLIAG 125 (773)
T ss_pred hCCCeEEEEeCcHHHHHHHHHHHHHHhCC-----CCceEEEEeCCCCHHHHHHHHhC-----CCEEEECHHHHHHHHHcC
Confidence 34689999999999999998888886421 13468889999999988877653 359999962 223
Q ss_pred cCCCCCceEEE
Q 038855 218 SVTIPGIKYVI 228 (260)
Q Consensus 218 gidIp~V~~VI 228 (260)
-+.+.++++||
T Consensus 126 ~~~~~~~~liV 136 (773)
T PRK13766 126 RISLEDVSLLI 136 (773)
T ss_pred CCChhhCcEEE
Confidence 34556777655
No 182
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=82.94 E-value=6.1 Score=40.42 Aligned_cols=74 Identities=14% Similarity=0.205 Sum_probs=53.7
Q ss_pred CCCE-EEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC------ccccc
Q 038855 146 PGDI-LVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN------IAETS 218 (260)
Q Consensus 146 ~g~i-LVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd------iae~g 218 (260)
.|++ ||-+||++-+.++.....++.+- -++.++.+||+.+.-+|.+-++. ..-|+|||+ +---+
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf~K~-----ygl~~v~~ygGgsk~eQ~k~Lk~----g~EivVaTPgRlid~VkmKa 365 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKFGKA-----YGLRVVAVYGGGSKWEQSKELKE----GAEIVVATPGRLIDMVKMKA 365 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhhhh-----ccceEEEeecCCcHHHHHHhhhc----CCeEEEechHHHHHHHHhhc
Confidence 4566 67789999999888877765321 37899999999999999888872 236999998 12234
Q ss_pred CCCCCceEEE
Q 038855 219 VTIPGIKYVI 228 (260)
Q Consensus 219 idIp~V~~VI 228 (260)
+++..|+|.|
T Consensus 366 tn~~rvS~LV 375 (731)
T KOG0339|consen 366 TNLSRVSYLV 375 (731)
T ss_pred ccceeeeEEE
Confidence 5556666644
No 183
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=82.92 E-value=4.6 Score=42.98 Aligned_cols=78 Identities=15% Similarity=0.105 Sum_probs=64.4
Q ss_pred cCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCC---CeEEEEecCcccccCC
Q 038855 144 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAG---FRKVILATNIAETSVT 220 (260)
Q Consensus 144 ~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g---~~kVlvaTdiae~gid 220 (260)
+.+..+|||-.-..-.+-+..++.- ++|.++.+-|+.+-++|...++.|.+. +.-.+++|=....||.
T Consensus 485 ~~GhRVLIFSQmt~mLDILeDyc~~---------R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGIN 555 (971)
T KOG0385|consen 485 EQGHRVLIFSQMTRMLDILEDYCML---------RGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGIN 555 (971)
T ss_pred hCCCeEEEeHHHHHHHHHHHHHHHh---------cCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccc
Confidence 3467899998776666666666665 599999999999999999999999643 4557789999999999
Q ss_pred CCCceEEEeC
Q 038855 221 IPGIKYVIDP 230 (260)
Q Consensus 221 Ip~V~~VId~ 230 (260)
.-..+.||=+
T Consensus 556 L~aADtVIly 565 (971)
T KOG0385|consen 556 LTAADTVILY 565 (971)
T ss_pred cccccEEEEe
Confidence 9999999833
No 184
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=81.18 E-value=5 Score=42.52 Aligned_cols=53 Identities=11% Similarity=0.071 Sum_probs=44.2
Q ss_pred CCeEEEEecCCCCHHHHHHHhcccCC--CC-eEEEEecCcccccCCCCCceEEEeC
Q 038855 178 RKLVTVPIFSSLPSEQQMKVFAPAAA--GF-RKVILATNIAETSVTIPGIKYVIDP 230 (260)
Q Consensus 178 ~~~~~~~lh~~l~~~~r~~v~~~~~~--g~-~kVlvaTdiae~gidIp~V~~VId~ 230 (260)
.++.++.+||+++..+|.+++..|.. +. .-.|++|-...-||..-|...||=+
T Consensus 618 ~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~ 673 (776)
T KOG0390|consen 618 RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILF 673 (776)
T ss_pred cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEe
Confidence 49999999999999999999999963 33 4456777888899999999888844
No 185
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=78.07 E-value=8.1 Score=39.58 Aligned_cols=59 Identities=15% Similarity=0.201 Sum_probs=47.3
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN 213 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd 213 (260)
...+||.|||++-+-+|+...+++.. . ..+.++..-|+|+-..|+.++...+ .|+|||+
T Consensus 252 ~TRVLVL~PTRELaiQv~sV~~qlaq-F----t~I~~~L~vGGL~lk~QE~~LRs~P----DIVIATP 310 (691)
T KOG0338|consen 252 ATRVLVLVPTRELAIQVHSVTKQLAQ-F----TDITVGLAVGGLDLKAQEAVLRSRP----DIVIATP 310 (691)
T ss_pred ceeEEEEeccHHHHHHHHHHHHHHHh-h----ccceeeeeecCccHHHHHHHHhhCC----CEEEecc
Confidence 34799999999987777766665431 1 3688999999999999999987665 8999998
No 186
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=75.63 E-value=3.1 Score=45.30 Aligned_cols=47 Identities=17% Similarity=0.130 Sum_probs=42.3
Q ss_pred EEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEE
Q 038855 182 TVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVI 228 (260)
Q Consensus 182 ~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VI 228 (260)
+..+|++|....|--|.--|+.|.-.|++||...+-||..|=-++|.
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF 1011 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVF 1011 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEE
Confidence 56789999999999999999999999999999999999998655553
No 187
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=74.78 E-value=7.5 Score=43.15 Aligned_cols=87 Identities=14% Similarity=0.131 Sum_probs=71.5
Q ss_pred cCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCC-C--CeEEEEecCcccccCC
Q 038855 144 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAA-G--FRKVILATNIAETSVT 220 (260)
Q Consensus 144 ~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~-g--~~kVlvaTdiae~gid 220 (260)
..+..+|||-.-..-.+-++++|.. ++|++-.|-|+...+.|..++..|.+ + ....|+||=....||.
T Consensus 697 ~~GHrVLIFSQMVRmLDIL~eYL~~---------r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGIN 767 (1373)
T KOG0384|consen 697 EGGHRVLIFSQMVRMLDILAEYLSL---------RGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGIN 767 (1373)
T ss_pred cCCceEEEhHHHHHHHHHHHHHHHH---------cCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCccccc
Confidence 4467899999888888888888887 59999999999999999999999964 2 5678999999999999
Q ss_pred CCCceEEEeCCCccceeeecCCC
Q 038855 221 IPGIKYVIDPGFVKARSYDPVKG 243 (260)
Q Consensus 221 Ip~V~~VId~g~~~~~~yd~~~g 243 (260)
+...+.||=++ ..|||...
T Consensus 768 LatADTVIIFD----SDWNPQND 786 (1373)
T KOG0384|consen 768 LATADTVIIFD----SDWNPQND 786 (1373)
T ss_pred ccccceEEEeC----CCCCcchH
Confidence 99999888332 24665543
No 188
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=74.71 E-value=1.2 Score=39.59 Aligned_cols=12 Identities=50% Similarity=0.913 Sum_probs=10.8
Q ss_pred cccEEEEecCCc
Q 038855 10 RYSVIIVDEAHE 21 (260)
Q Consensus 10 ~~~~vIlDEahe 21 (260)
+++.||+||+|.
T Consensus 134 ~~~~vIvDEaH~ 145 (299)
T PF00176_consen 134 KWDRVIVDEAHR 145 (299)
T ss_dssp EEEEEEETTGGG
T ss_pred cceeEEEecccc
Confidence 589999999996
No 189
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=74.51 E-value=10 Score=38.73 Aligned_cols=59 Identities=19% Similarity=0.143 Sum_probs=51.0
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN 213 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd 213 (260)
.+.+||..|+++-+....+.++. .++.+..++|+.+.+++..++.....|..+++++|+
T Consensus 65 ~g~tlVisPl~sL~~dqv~~l~~---------~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tP 123 (607)
T PRK11057 65 DGLTLVVSPLISLMKDQVDQLLA---------NGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAP 123 (607)
T ss_pred CCCEEEEecHHHHHHHHHHHHHH---------cCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEECh
Confidence 57899999999988887777776 377888999999999998888888889999998885
No 190
>PTZ00424 helicase 45; Provisional
Probab=74.05 E-value=34 Score=32.16 Aligned_cols=75 Identities=12% Similarity=0.149 Sum_probs=50.3
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcc------ccc
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIA------ETS 218 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdia------e~g 218 (260)
....+||++|+++-+.++.+.+...... .+..+..+.|+.........+. .+ ..|+|+|+=. .+.
T Consensus 95 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~---~~-~~Ivv~Tp~~l~~~l~~~~ 165 (401)
T PTZ00424 95 NACQALILAPTRELAQQIQKVVLALGDY-----LKVRCHACVGGTVVRDDINKLK---AG-VHMVVGTPGRVYDMIDKRH 165 (401)
T ss_pred CCceEEEECCCHHHHHHHHHHHHHHhhh-----cCceEEEEECCcCHHHHHHHHc---CC-CCEEEECcHHHHHHHHhCC
Confidence 3567999999999998888877775321 2556777788877655443332 22 4699999721 234
Q ss_pred CCCCCceEEE
Q 038855 219 VTIPGIKYVI 228 (260)
Q Consensus 219 idIp~V~~VI 228 (260)
+.+.++++||
T Consensus 166 ~~l~~i~lvV 175 (401)
T PTZ00424 166 LRVDDLKLFI 175 (401)
T ss_pred cccccccEEE
Confidence 5677888776
No 191
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=72.88 E-value=1.3e+02 Score=31.76 Aligned_cols=74 Identities=14% Similarity=0.199 Sum_probs=42.7
Q ss_pred CCCE-EEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCc
Q 038855 146 PGDI-LVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGI 224 (260)
Q Consensus 146 ~g~i-LVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V 224 (260)
+... +|..|+...+..+...+++.+...........+..-.|. ..|+.|- +|++.-|--+.|+-=.++
T Consensus 562 ~~~~~lIla~tn~~v~~LN~~ir~~L~~~g~l~~~~~~~~~~g~----------~~~~~GD-rV~~~~N~~~~gv~NGd~ 630 (744)
T TIGR02768 562 PAGSQIMLAHTRKDVRALNEAAREALIERGELGESILFQTARGE----------RKFAAGD-RIVFLENNRDLGVKNGML 630 (744)
T ss_pred cccceEEEcCchHhHHHHHHHHHHHHHhcCccCcCceeeccCCC----------ceecCCC-EEEEEecccccCCcCCCE
Confidence 4445 899999999999999999987532111111111111111 1344555 566666666666665666
Q ss_pred eEEEeC
Q 038855 225 KYVIDP 230 (260)
Q Consensus 225 ~~VId~ 230 (260)
-.|+..
T Consensus 631 g~V~~i 636 (744)
T TIGR02768 631 GTVEEI 636 (744)
T ss_pred EEEEEe
Confidence 666654
No 192
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=71.92 E-value=12 Score=41.46 Aligned_cols=60 Identities=13% Similarity=0.162 Sum_probs=48.9
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCC--CCeEEEEecC
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAA--GFRKVILATN 213 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~--g~~kVlvaTd 213 (260)
.+|.+||..|+++=+..-...|.. .++.+..+.|+++..++.+++..... |..+||++|+
T Consensus 499 ~~GiTLVISPLiSLmqDQV~~L~~---------~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTP 560 (1195)
T PLN03137 499 CPGITLVISPLVSLIQDQIMNLLQ---------ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTP 560 (1195)
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHh---------CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEECh
Confidence 367899999999988644444444 38899999999999999999887765 8889999998
No 193
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=70.95 E-value=20 Score=35.81 Aligned_cols=74 Identities=12% Similarity=0.058 Sum_probs=49.1
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC-----ccc-ccC
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN-----IAE-TSV 219 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd-----iae-~gi 219 (260)
...+||.+||++=+.++++.++.+... .++.++.+.|+-+..++...+. . ...|||+|+ +.. .++
T Consensus 196 ~~~aLIL~PTreLa~Qi~~~~~~l~~~-----~~~~~~~~~gG~~~~~q~~~l~---~-~~~IiV~TPgrL~~~l~~~~~ 266 (518)
T PLN00206 196 NPLAMVLTPTRELCVQVEDQAKVLGKG-----LPFKTALVVGGDAMPQQLYRIQ---Q-GVELIVGTPGRLIDLLSKHDI 266 (518)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCC-----CCceEEEEECCcchHHHHHHhc---C-CCCEEEECHHHHHHHHHcCCc
Confidence 457899999999999888887765322 2466777777766665543332 2 247999995 333 355
Q ss_pred CCCCceEEE
Q 038855 220 TIPGIKYVI 228 (260)
Q Consensus 220 dIp~V~~VI 228 (260)
.+.++++||
T Consensus 267 ~l~~v~~lV 275 (518)
T PLN00206 267 ELDNVSVLV 275 (518)
T ss_pred cchheeEEE
Confidence 666777654
No 194
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=70.67 E-value=13 Score=35.16 Aligned_cols=75 Identities=12% Similarity=0.197 Sum_probs=57.0
Q ss_pred CEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC------cccccCCC
Q 038855 148 DILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN------IAETSVTI 221 (260)
Q Consensus 148 ~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd------iae~gidI 221 (260)
.+||.|.|++-+-.+.+.-...- .......+..++|+++-..-+++++. ...|+|+|+ +-++++.+
T Consensus 112 svlvmchtrelafqi~~ey~rfs----kymP~vkvaVFfGG~~Ikkdee~lk~----~PhivVgTPGrilALvr~k~l~l 183 (387)
T KOG0329|consen 112 SVLVMCHTRELAFQISKEYERFS----KYMPSVKVSVFFGGLFIKKDEELLKN----CPHIVVGTPGRILALVRNRSLNL 183 (387)
T ss_pred EEEEEeccHHHHHHHHHHHHHHH----hhCCCceEEEEEcceeccccHHHHhC----CCeEEEcCcHHHHHHHHhccCch
Confidence 57999999998777766655432 22357899999999998887777765 568999998 45778888
Q ss_pred CCceEEE-eC
Q 038855 222 PGIKYVI-DP 230 (260)
Q Consensus 222 p~V~~VI-d~ 230 (260)
.+|+|-| |-
T Consensus 184 k~vkhFvlDE 193 (387)
T KOG0329|consen 184 KNVKHFVLDE 193 (387)
T ss_pred hhcceeehhh
Confidence 8888754 44
No 195
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=69.60 E-value=3.6 Score=44.55 Aligned_cols=13 Identities=38% Similarity=0.879 Sum_probs=11.4
Q ss_pred CcccEEEEecCCc
Q 038855 9 SRYSVIIVDEAHE 21 (260)
Q Consensus 9 ~~~~~vIlDEahe 21 (260)
.++++||+||||.
T Consensus 271 ~~wdlvIvDEAH~ 283 (956)
T PRK04914 271 AEWDLLVVDEAHH 283 (956)
T ss_pred cCCCEEEEechhh
Confidence 3789999999995
No 196
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=69.55 E-value=13 Score=38.28 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=55.6
Q ss_pred HHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC
Q 038855 138 FQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN 213 (260)
Q Consensus 138 ~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd 213 (260)
+|+..--.+|-+||-.|-..=+..-.+.|+. .++.+..++|+++.++|..++.....|..++|.-++
T Consensus 49 yQiPAll~~G~TLVVSPLiSLM~DQV~~l~~---------~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisP 115 (590)
T COG0514 49 YQIPALLLEGLTLVVSPLISLMKDQVDQLEA---------AGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISP 115 (590)
T ss_pred hhhHHHhcCCCEEEECchHHHHHHHHHHHHH---------cCceeehhhcccCHHHHHHHHHHHhcCceeEEEECc
Confidence 3433333378999999999988877777777 489999999999999999999999999999887655
No 197
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=68.55 E-value=31 Score=36.37 Aligned_cols=58 Identities=14% Similarity=0.095 Sum_probs=46.0
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN 213 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd 213 (260)
....+|+.+||++=+....+.++++. ..++.+..++|+.+.++|..+.+ ...|||+|+
T Consensus 80 ~~~~aL~l~PtraLa~q~~~~l~~l~------~~~i~v~~~~Gdt~~~~r~~i~~-----~~~IivtTP 137 (742)
T TIGR03817 80 PRATALYLAPTKALAADQLRAVRELT------LRGVRPATYDGDTPTEERRWARE-----HARYVLTNP 137 (742)
T ss_pred CCcEEEEEcChHHHHHHHHHHHHHhc------cCCeEEEEEeCCCCHHHHHHHhc-----CCCEEEECh
Confidence 34689999999999999999988763 13678899999999888865543 247999996
No 198
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=68.24 E-value=32 Score=34.20 Aligned_cols=72 Identities=11% Similarity=0.042 Sum_probs=51.6
Q ss_pred HHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEec
Q 038855 133 TLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILAT 212 (260)
Q Consensus 133 ~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaT 212 (260)
.+..+-.+.....+.-+||-.||++-+.++.+..+.+ + ..-++.+..+-|++....++..+. .+..|||||
T Consensus 116 aLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~L-g----~~iglr~~~lvGG~~m~~q~~~L~----kkPhilVaT 186 (476)
T KOG0330|consen 116 ALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEAL-G----SGIGLRVAVLVGGMDMMLQANQLS----KKPHILVAT 186 (476)
T ss_pred HHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHh-c----cccCeEEEEEecCchHHHHHHHhh----cCCCEEEeC
Confidence 3444444444555678999999999888888776664 2 125899999999999887664432 245789999
Q ss_pred C
Q 038855 213 N 213 (260)
Q Consensus 213 d 213 (260)
+
T Consensus 187 P 187 (476)
T KOG0330|consen 187 P 187 (476)
T ss_pred c
Confidence 7
No 199
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=68.16 E-value=18 Score=38.72 Aligned_cols=76 Identities=14% Similarity=0.137 Sum_probs=66.8
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCC-CeEEEEecCcccccCCCCCc
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAG-FRKVILATNIAETSVTIPGI 224 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g-~~kVlvaTdiae~gidIp~V 224 (260)
+..+|+|+.-..-++.++.+|.. +++..+.+-|+..-+.|..+...|... ..-.|++|-....||.+...
T Consensus 1044 gHRvL~yfQMTkM~dl~EdYl~y---------r~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAA 1114 (1185)
T KOG0388|consen 1044 GHRVLMYFQMTKMIDLIEDYLVY---------RGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAA 1114 (1185)
T ss_pred CceEEehhHHHHHHHHHHHHHHh---------hccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCccccccccc
Confidence 56899999988999999999987 499999999999999999999999864 34567899999999999999
Q ss_pred eEEEeC
Q 038855 225 KYVIDP 230 (260)
Q Consensus 225 ~~VId~ 230 (260)
+.||=+
T Consensus 1115 DTViFY 1120 (1185)
T KOG0388|consen 1115 DTVIFY 1120 (1185)
T ss_pred ceEEEe
Confidence 999944
No 200
>PRK07952 DNA replication protein DnaC; Validated
Probab=67.16 E-value=13 Score=33.93 Aligned_cols=56 Identities=16% Similarity=0.249 Sum_probs=40.6
Q ss_pred CCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCceEE
Q 038855 8 LSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLKLI 87 (260)
Q Consensus 8 L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qli 87 (260)
+.++++|||||++... .+++-..++-.+.+.|.. ..+-.
T Consensus 160 l~~~dlLvIDDig~~~-~s~~~~~~l~~Ii~~Ry~----------------------------------------~~~~t 198 (244)
T PRK07952 160 LSNVDLLVIDEIGVQT-ESRYEKVIINQIVDRRSS----------------------------------------SKRPT 198 (244)
T ss_pred hccCCEEEEeCCCCCC-CCHHHHHHHHHHHHHHHh----------------------------------------CCCCE
Confidence 5689999999998643 567767777777776641 23457
Q ss_pred EEeccCCHHHHHhhhCC
Q 038855 88 IMSASLDARGFSEYFGC 104 (260)
Q Consensus 88 l~SATl~~~~~~~~~~~ 104 (260)
+++.-++...+.+++++
T Consensus 199 iitSNl~~~~l~~~~g~ 215 (244)
T PRK07952 199 GMLTNSNMEEMTKLLGE 215 (244)
T ss_pred EEeCCCCHHHHHHHhCh
Confidence 78888888888877754
No 201
>PRK13767 ATP-dependent helicase; Provisional
Probab=66.91 E-value=39 Score=36.25 Aligned_cols=63 Identities=13% Similarity=0.047 Sum_probs=46.0
Q ss_pred CCEEEEeCCHHHHHHHHHHHHHHHhc-------CccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC
Q 038855 147 GDILVFLTGQEEIESVERLVQERLLQ-------LPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN 213 (260)
Q Consensus 147 g~iLVFl~~~~~ve~v~~~L~~~l~~-------~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd 213 (260)
..+|+.+|+++-+..+++.|.+.+.. ......++.+..+||+.++.++.+.+.. ...|+|+|+
T Consensus 85 ~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~----~p~IlVtTP 154 (876)
T PRK13767 85 VYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKK----PPHILITTP 154 (876)
T ss_pred eEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhC----CCCEEEecH
Confidence 35899999999998888766643321 1122237789999999999998877653 347999997
No 202
>PRK06893 DNA replication initiation factor; Validated
Probab=65.74 E-value=10 Score=33.61 Aligned_cols=15 Identities=13% Similarity=0.346 Sum_probs=12.4
Q ss_pred CCcccEEEEecCCcC
Q 038855 8 LSRYSVIIVDEAHER 22 (260)
Q Consensus 8 L~~~~~vIlDEaher 22 (260)
+.+++++||||+|..
T Consensus 89 ~~~~dlLilDDi~~~ 103 (229)
T PRK06893 89 LEQQDLVCLDDLQAV 103 (229)
T ss_pred cccCCEEEEeChhhh
Confidence 567899999999953
No 203
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=65.37 E-value=13 Score=30.87 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=37.8
Q ss_pred CCHHHHHHHhcccCCCC-eEEEEecCcccccCCCCC--ceEEEeCCCccceeeec
Q 038855 189 LPSEQQMKVFAPAAAGF-RKVILATNIAETSVTIPG--IKYVIDPGFVKARSYDP 240 (260)
Q Consensus 189 l~~~~r~~v~~~~~~g~-~kVlvaTdiae~gidIp~--V~~VId~g~~~~~~yd~ 240 (260)
....+..++++.|+... .-||++|.-..-|||+|+ .+.||=.|+|...-.||
T Consensus 31 ~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~ 85 (141)
T smart00492 31 EDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSP 85 (141)
T ss_pred CChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCH
Confidence 33334566777776543 379999988999999997 57899999987655444
No 204
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=64.89 E-value=26 Score=37.63 Aligned_cols=62 Identities=19% Similarity=0.214 Sum_probs=40.3
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCC--CCeEEEEecCccc
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAA--GFRKVILATNIAE 216 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~--g~~kVlvaTdiae 216 (260)
.+|+=||-||+.. + ..+|++.-.=| +.+.+.++||+. .+|.++-..+.. +...|||+|=-.+
T Consensus 447 ~~gpHLVVvPsST-l---eNWlrEf~kwC----Psl~Ve~YyGSq--~ER~~lR~~i~~~~~~ydVllTTY~la 510 (941)
T KOG0389|consen 447 NPGPHLVVVPSST-L---ENWLREFAKWC----PSLKVEPYYGSQ--DERRELRERIKKNKDDYDVLLTTYNLA 510 (941)
T ss_pred CCCCcEEEecchh-H---HHHHHHHHHhC----CceEEEeccCcH--HHHHHHHHHHhccCCCccEEEEEeecc
Confidence 4899999999753 3 44444433323 378999999987 555555444443 3778888884333
No 205
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=64.50 E-value=49 Score=35.64 Aligned_cols=116 Identities=10% Similarity=0.050 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhh--cCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCC--eE
Q 038855 132 ATLITIFQVHLD--EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGF--RK 207 (260)
Q Consensus 132 ~~~~~l~~i~~~--~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~--~k 207 (260)
.++..|..++.. ..+..+|+|--=..-.+-++..|.- .++.++.|-|+-.-+.|..++..|-..+ .-
T Consensus 761 gK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~---------l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difV 831 (941)
T KOG0389|consen 761 GKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDT---------LGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFV 831 (941)
T ss_pred hhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHh---------cCceEEeecCCccchHHHHHHHhhccCCceEE
Confidence 455555444432 2356899998666666666666665 3999999999999999999999997543 45
Q ss_pred EEEecCcccccCCCCCceEEEeCCCccceeee-------cCCCce--eeeEEeeehhh
Q 038855 208 VILATNIAETSVTIPGIKYVIDPGFVKARSYD-------PVKGME--SLIVVPISKAQ 256 (260)
Q Consensus 208 VlvaTdiae~gidIp~V~~VId~g~~~~~~yd-------~~~g~~--~l~~~~isk~~ 256 (260)
.|++|-...-||..-...+||=++.-..+.-| |+-|-+ +-+.+-|||..
T Consensus 832 FLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 832 FLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred EEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCc
Confidence 78999999999999999999844443333222 555644 46677787754
No 206
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=63.20 E-value=3.2e+02 Score=32.49 Aligned_cols=146 Identities=18% Similarity=0.209 Sum_probs=79.4
Q ss_pred CCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCceEE
Q 038855 8 LSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLKLI 87 (260)
Q Consensus 8 L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qli 87 (260)
|..-++|||||| -++++..+..+++..... ..|+|
T Consensus 527 l~~~~vlIVDEA--sMl~~~~~~~Ll~~a~~~-------------------------------------------garvV 561 (1960)
T TIGR02760 527 FSNKDIFVVDEA--NKLSNNELLKLIDKAEQH-------------------------------------------NSKLI 561 (1960)
T ss_pred CCCCCEEEEECC--CCCCHHHHHHHHHHHhhc-------------------------------------------CCEEE
Confidence 567899999999 477877777777655432 34677
Q ss_pred EEeccCCH------HHHHhhh-CCCcEEEecC---ceeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHH
Q 038855 88 IMSASLDA------RGFSEYF-GCAKAVHVQG---RQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQE 157 (260)
Q Consensus 88 l~SATl~~------~~~~~~~-~~~~~v~v~~---~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ 157 (260)
++.=+-.. ..|..+- .+.+.+.+.. ...++ ....................+.. .....+|+.++.+
T Consensus 562 lvGD~~QL~sV~aG~~f~~L~~~gv~t~~l~~i~rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~--~r~~tliv~~t~~ 637 (1960)
T TIGR02760 562 LLNDSAQRQGMSAGSAIDLLKEGGVTTYAWVDTKQQKASV--EISEAVDKLRVDYIASAWLDLTP--DRQNSQVLATTHR 637 (1960)
T ss_pred EEcChhhcCccccchHHHHHHHCCCcEEEeecccccCcce--eeeccCchHHHHHHHHHHHhccc--ccCceEEEcCCcH
Confidence 77544211 2233211 2334433322 11222 11121222222233333333333 2346899999999
Q ss_pred HHHHHHHHHHHHHh---cCccCCCCeEEEEe-cCCCCHHHHHHHhcccCCCC
Q 038855 158 EIESVERLVQERLL---QLPEASRKLVTVPI-FSSLPSEQQMKVFAPAAAGF 205 (260)
Q Consensus 158 ~ve~v~~~L~~~l~---~~~~~~~~~~~~~l-h~~l~~~~r~~v~~~~~~g~ 205 (260)
+...+...++..|. .+.. ....+..+ -..+++.++... ..++.|-
T Consensus 638 dr~~Ln~~iR~~L~~~G~L~~--~~~~~~~L~p~~lt~~e~r~~-~~Yr~Gd 686 (1960)
T TIGR02760 638 EQQDLTQIIRNALKQEGQLSR--QEVTVPTLKPVNLTGIQRRNA-AHYKQGM 686 (1960)
T ss_pred HHHHHHHHHHHHHHHcCCcCC--CceEEEEeccCCCCHHHHhhH-hhcCCCC
Confidence 99999999999883 3322 13332222 346777777643 5555554
No 207
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=62.64 E-value=36 Score=34.64 Aligned_cols=87 Identities=17% Similarity=0.257 Sum_probs=61.2
Q ss_pred hhcCCC--CEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC-----c
Q 038855 142 LDEAPG--DILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN-----I 214 (260)
Q Consensus 142 ~~~~~g--~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd-----i 214 (260)
....|+ ..||..||++-+.++.+.++..+.++ .++.+..+-|+.+-++-.+ .|++....|+|+|+ +
T Consensus 73 ~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l----~~l~~~l~vGG~~v~~Di~---~fkee~~nIlVgTPGRL~di 145 (567)
T KOG0345|consen 73 AKTPPGQVGALIISPTRELARQIREVAQPFLEHL----PNLNCELLVGGRSVEEDIK---TFKEEGPNILVGTPGRLLDI 145 (567)
T ss_pred cCCCccceeEEEecCcHHHHHHHHHHHHHHHHhh----hccceEEEecCccHHHHHH---HHHHhCCcEEEeCchhHHHH
Confidence 344566 46999999999988888888877765 3788888999977776544 45566778999997 3
Q ss_pred ccc---cCCC--------CCceEEEeCCCccc
Q 038855 215 AET---SVTI--------PGIKYVIDPGFVKA 235 (260)
Q Consensus 215 ae~---gidI--------p~V~~VId~g~~~~ 235 (260)
..+ .++. ...+-.+|+||...
T Consensus 146 ~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~ 177 (567)
T KOG0345|consen 146 LQREAEKLSFRSLEILVLDEADRLLDMGFEAS 177 (567)
T ss_pred HhchhhhccccccceEEecchHhHhcccHHHH
Confidence 443 2232 34444557888765
No 208
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=62.33 E-value=43 Score=38.33 Aligned_cols=79 Identities=19% Similarity=0.172 Sum_probs=55.9
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCc-------cCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCc----
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLP-------EASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNI---- 214 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~-------~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdi---- 214 (260)
...+|+..|+++=+..+.+.|+..+.... ....++.+..+||+.++.+|.+.++. ...|||+|+-
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~~----ppdILVTTPEsL~~ 112 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRN----PPDILITTPESLYL 112 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhcC----CCCEEEecHHHHHH
Confidence 35799999999999999888875432111 11136889999999999999877653 3479999983
Q ss_pred --cccc-CCCCCceEEE
Q 038855 215 --AETS-VTIPGIKYVI 228 (260)
Q Consensus 215 --ae~g-idIp~V~~VI 228 (260)
..+. -.+.+|++||
T Consensus 113 LLtsk~r~~L~~Vr~VI 129 (1490)
T PRK09751 113 MLTSRARETLRGVETVI 129 (1490)
T ss_pred HHhhhhhhhhccCCEEE
Confidence 1222 2467788877
No 209
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=62.25 E-value=6.5 Score=30.52 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=15.5
Q ss_pred cEEEEecCCcCCcchhHHHHHHHHHHh
Q 038855 12 SVIIVDEAHERTVHTDVLLGLLKKVQN 38 (260)
Q Consensus 12 ~~vIlDEaher~~~~d~ll~~lk~~~~ 38 (260)
.+|||||||.-. . +-.+..++.+.+
T Consensus 89 ~~lviDe~~~l~-~-~~~l~~l~~l~~ 113 (131)
T PF13401_consen 89 VLLVIDEADHLF-S-DEFLEFLRSLLN 113 (131)
T ss_dssp EEEEEETTHHHH-T-HHHHHHHHHHTC
T ss_pred eEEEEeChHhcC-C-HHHHHHHHHHHh
Confidence 589999999621 2 444555555544
No 210
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=62.10 E-value=62 Score=23.97 Aligned_cols=61 Identities=18% Similarity=0.213 Sum_probs=44.5
Q ss_pred cCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCc
Q 038855 144 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNI 214 (260)
Q Consensus 144 ~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdi 214 (260)
...+.++|++|+..-++++.+.+...... ...+..+++......+.... .....|+++|.-
T Consensus 28 ~~~~~~lv~~p~~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~----~~~~~i~i~t~~ 88 (144)
T cd00046 28 LKGGQVLVLAPTRELANQVAERLKELFGE------GIKVGYLIGGTSIKQQEKLL----SGKTDIVVGTPG 88 (144)
T ss_pred ccCCCEEEEcCcHHHHHHHHHHHHHHhhC------CcEEEEEecCcchhHHHHHh----cCCCCEEEECcH
Confidence 35689999999999999999888876421 46677888877766654222 245678888876
No 211
>PRK06526 transposase; Provisional
Probab=61.56 E-value=18 Score=32.98 Aligned_cols=15 Identities=47% Similarity=0.693 Sum_probs=12.4
Q ss_pred CCcccEEEEecCCcC
Q 038855 8 LSRYSVIIVDEAHER 22 (260)
Q Consensus 8 L~~~~~vIlDEaher 22 (260)
+.++++|||||+|.-
T Consensus 157 l~~~dlLIIDD~g~~ 171 (254)
T PRK06526 157 LGRYPLLIVDEVGYI 171 (254)
T ss_pred hccCCEEEEcccccC
Confidence 567899999999853
No 212
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=60.90 E-value=12 Score=35.61 Aligned_cols=11 Identities=18% Similarity=0.178 Sum_probs=9.1
Q ss_pred CceEEEEeccC
Q 038855 83 PLKLIIMSASL 93 (260)
Q Consensus 83 ~~qlil~SATl 93 (260)
.-+++.+|||-
T Consensus 210 ~ARvvY~SATg 220 (303)
T PF13872_consen 210 NARVVYASATG 220 (303)
T ss_pred CCcEEEecccc
Confidence 45799999995
No 213
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=59.87 E-value=42 Score=36.18 Aligned_cols=63 Identities=16% Similarity=0.195 Sum_probs=47.0
Q ss_pred CCCEEEEe-CCHHHHHHHHHHHHHHHhcCc------------------cCCCCeEEEEecCCCCHHHHHHHhcccCCCCe
Q 038855 146 PGDILVFL-TGQEEIESVERLVQERLLQLP------------------EASRKLVTVPIFSSLPSEQQMKVFAPAAAGFR 206 (260)
Q Consensus 146 ~g~iLVFl-~~~~~ve~v~~~L~~~l~~~~------------------~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~ 206 (260)
..+.|||+ |+++-+.++++.+++....++ .+..++.+..++|+.+.+.+.+.+. ...
T Consensus 61 ~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~----~~p 136 (844)
T TIGR02621 61 VPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDP----HRP 136 (844)
T ss_pred ccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcC----CCC
Confidence 34678877 999999999988888765442 2234689999999999887765543 234
Q ss_pred EEEEec
Q 038855 207 KVILAT 212 (260)
Q Consensus 207 kVlvaT 212 (260)
.|||+|
T Consensus 137 ~IIVgT 142 (844)
T TIGR02621 137 AVIVGT 142 (844)
T ss_pred cEEEEC
Confidence 799999
No 214
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=59.71 E-value=1.1e+02 Score=33.35 Aligned_cols=110 Identities=20% Similarity=0.264 Sum_probs=67.1
Q ss_pred CcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHH-----HHhcCccCCCCeEEEEecCCCCHHHHHHHhcc
Q 038855 126 EPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQE-----RLLQLPEASRKLVTVPIFSSLPSEQQMKVFAP 200 (260)
Q Consensus 126 ~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~-----~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~ 200 (260)
.+.|....-..|..++..-+.| +|+|+|+..-.+++....+. .+... .++.+-|=-++.-.+......+.
T Consensus 542 ~~ey~~~lg~~i~~v~rvVp~G-~L~FfPSY~vmdk~~tfw~~~~~we~~~~v----k~l~vEPr~k~~f~e~m~~y~~~ 616 (945)
T KOG1132|consen 542 TPEYLSELGEAILNVARVVPYG-LLIFFPSYPVMDKLITFWQNRGLWERMEKV----KKLVVEPRSKSEFTEVMSRYYNA 616 (945)
T ss_pred CHHHHHHHHHHHHHHHhhcccc-eEEeccchHHHHHHHHHHHcchHHHHhhcc----cCceeccCCccchHHHHHHHHHH
Confidence 3456666666677766665444 99999999888877444332 22211 23444444333333322222222
Q ss_pred cC----CCCeEEEEecCcccccCCCC--CceEEEeCCCccceeeec
Q 038855 201 AA----AGFRKVILATNIAETSVTIP--GIKYVIDPGFVKARSYDP 240 (260)
Q Consensus 201 ~~----~g~~kVlvaTdiae~gidIp--~V~~VId~g~~~~~~yd~ 240 (260)
.. .|..-.-||=-=++.|+|.- +-+.||=+|+|.-+.=||
T Consensus 617 i~~pes~ga~~~aVcRGKVSEGlDFsD~~~RaVI~tGlPyP~~~D~ 662 (945)
T KOG1132|consen 617 IADPESSGAVFFAVCRGKVSEGLDFSDDNGRAVIITGLPYPPVMDP 662 (945)
T ss_pred hhCccccceEEEEEecccccCCCCccccCCceeEEecCCCCCCCCH
Confidence 22 24445667777888999995 678999999998766654
No 215
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=59.26 E-value=55 Score=34.43 Aligned_cols=83 Identities=16% Similarity=0.158 Sum_probs=70.1
Q ss_pred HhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC-cccccC
Q 038855 141 HLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN-IAETSV 219 (260)
Q Consensus 141 ~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd-iae~gi 219 (260)
..-++++++..-.||-==+++-++.+.+.+..+ ++.+..+-|++...+|.++++...+|...|+|-|- +..-.+
T Consensus 306 ~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~-----~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V 380 (677)
T COG1200 306 AAIEAGYQAALMAPTEILAEQHYESLRKWLEPL-----GIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKV 380 (677)
T ss_pred HHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhc-----CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcce
Confidence 344567899999999888888888888877643 68999999999999999999999999999999886 456677
Q ss_pred CCCCceEEE
Q 038855 220 TIPGIKYVI 228 (260)
Q Consensus 220 dIp~V~~VI 228 (260)
..-+..+||
T Consensus 381 ~F~~LgLVI 389 (677)
T COG1200 381 EFHNLGLVI 389 (677)
T ss_pred eecceeEEE
Confidence 788888877
No 216
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.85 E-value=4.6 Score=41.37 Aligned_cols=204 Identities=18% Similarity=0.208 Sum_probs=116.1
Q ss_pred CCCCcccEEEEecCCcCC-cchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCc
Q 038855 6 PYLSRYSVIIVDEAHERT-VHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPL 84 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~-~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (260)
..|+.+..+|+|-||-.. ....-++-++.-+...+.+ .-.+|-.-+..|+-|. ++ +. -+
T Consensus 411 dfLSSIEl~iIDQa~~~l~QNwEhl~~ifdHLn~~P~k---------~h~~DfSRVR~wyL~~---------qs-r~-~r 470 (698)
T KOG2340|consen 411 DFLSSIELLIIDQADIMLMQNWEHLLHIFDHLNLQPSK---------QHDVDFSRVRMWYLDG---------QS-RY-FR 470 (698)
T ss_pred hhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHhhcCccc---------ccCCChhheehheecc---------HH-HH-HH
Confidence 568999999999998421 1122244444444334431 1234555677777665 11 11 36
Q ss_pred eEEEEeccCCHHH---HHhhh----CCCcEEEecC------ceeeeeEEEeeCCCcc---hHHHHHHHHH-HHH---hhc
Q 038855 85 KLIIMSASLDARG---FSEYF----GCAKAVHVQG------RQFPVEILYTLYPEPD---FLDATLITIF-QVH---LDE 144 (260)
Q Consensus 85 qlil~SATl~~~~---~~~~~----~~~~~v~v~~------~~~~v~~~~~~~~~~~---~~~~~~~~l~-~i~---~~~ 144 (260)
|+++||+=.++.. |..|. |..+.-.+.+ ...|+.+.+..-...+ -.++-+.... .+. ...
T Consensus 471 Qtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D~RFkyFv~~ImPq~~k~ 550 (698)
T KOG2340|consen 471 QTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPDARFKYFVDKIMPQLIKR 550 (698)
T ss_pred HHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCchHHHHHHHHhhchhhccc
Confidence 8899998765432 33332 2222211211 1244444443321111 1112222111 111 112
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCccc--ccCCCC
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAE--TSVTIP 222 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae--~gidIp 222 (260)
....|||+.|+.-+--.+-..+.+ ..+.++.+|---+++.-.++-.-|-.|...|++-|.-|- |--+|.
T Consensus 551 t~s~~LiyIPSYfDFVRvRNy~K~---------e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ik 621 (698)
T KOG2340|consen 551 TESGILIYIPSYFDFVRVRNYMKK---------EEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIK 621 (698)
T ss_pred ccCceEEEecchhhHHHHHHHhhh---------hhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheec
Confidence 245689999999999998888877 356666666333333333334445678889999998764 567899
Q ss_pred CceEEEeCCCccceee
Q 038855 223 GIKYVIDPGFVKARSY 238 (260)
Q Consensus 223 ~V~~VId~g~~~~~~y 238 (260)
||+-||=++.|..+.|
T Consensus 622 GVk~vVfYqpP~~P~F 637 (698)
T KOG2340|consen 622 GVKNVVFYQPPNNPHF 637 (698)
T ss_pred ceeeEEEecCCCCcHH
Confidence 9999999999998753
No 217
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=57.90 E-value=63 Score=33.87 Aligned_cols=66 Identities=12% Similarity=0.057 Sum_probs=51.7
Q ss_pred cCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCC
Q 038855 144 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTI 221 (260)
Q Consensus 144 ~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidI 221 (260)
.....++|..||.+=+...++.+...+.- -++.+..+.|+++.++|...+. ..|+++|+ .|-|.|.
T Consensus 142 l~G~~v~VvTptreLA~qdae~~~~l~~~-----lGlsv~~i~gg~~~~~r~~~y~------~dIvygT~-~e~~FDy 207 (656)
T PRK12898 142 LAGLPVHVITVNDYLAERDAELMRPLYEA-----LGLTVGCVVEDQSPDERRAAYG------ADITYCTN-KELVFDY 207 (656)
T ss_pred hcCCeEEEEcCcHHHHHHHHHHHHHHHhh-----cCCEEEEEeCCCCHHHHHHHcC------CCEEEECC-Cchhhhh
Confidence 34568999999999999999998887543 3789999999999887776652 36999998 5566655
No 218
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=57.88 E-value=57 Score=33.33 Aligned_cols=76 Identities=12% Similarity=0.162 Sum_probs=60.7
Q ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC------ccc
Q 038855 143 DEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN------IAE 216 (260)
Q Consensus 143 ~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd------iae 216 (260)
...+|++|+-.||+-=+.+-++.+.+.++- +.-.++.|-|..+.++|..... +.+|++||+ +.+
T Consensus 55 ~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~i-----p~~~i~~ltGev~p~~R~~~w~-----~~kVfvaTPQvveNDl~~ 124 (542)
T COG1111 55 RWFGGKVLFLAPTKPLVLQHAEFCRKVTGI-----PEDEIAALTGEVRPEEREELWA-----KKKVFVATPQVVENDLKA 124 (542)
T ss_pred HhcCCeEEEecCCchHHHHHHHHHHHHhCC-----ChhheeeecCCCChHHHHHHHh-----hCCEEEeccHHHHhHHhc
Confidence 344668999999999999999998887531 2346899999999999998875 447999996 556
Q ss_pred ccCCCCCceEEE
Q 038855 217 TSVTIPGIKYVI 228 (260)
Q Consensus 217 ~gidIp~V~~VI 228 (260)
==||+.+|.++|
T Consensus 125 Grid~~dv~~li 136 (542)
T COG1111 125 GRIDLDDVSLLI 136 (542)
T ss_pred CccChHHceEEE
Confidence 667888888877
No 219
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=57.34 E-value=28 Score=35.79 Aligned_cols=90 Identities=9% Similarity=0.154 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCC--CeE
Q 038855 130 LDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAG--FRK 207 (260)
Q Consensus 130 ~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g--~~k 207 (260)
+++..+.++-+-.....-+.|||-.=..-.+.+.-.|.+ .++.++.+-|+|+...|...++.|++. .+-
T Consensus 622 IEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~k---------aGfscVkL~GsMs~~ardatik~F~nd~~c~v 692 (791)
T KOG1002|consen 622 IEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGK---------AGFSCVKLVGSMSPAARDATIKYFKNDIDCRV 692 (791)
T ss_pred HHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhc---------cCceEEEeccCCChHHHHHHHHHhccCCCeEE
Confidence 344555555444444455778887555555555555544 599999999999999999999999865 333
Q ss_pred EEEecCcccccCCCCCceEEE
Q 038855 208 VILATNIAETSVTIPGIKYVI 228 (260)
Q Consensus 208 VlvaTdiae~gidIp~V~~VI 228 (260)
.|++--.....+.+-...+|.
T Consensus 693 fLvSLkAGGVALNLteASqVF 713 (791)
T KOG1002|consen 693 FLVSLKAGGVALNLTEASQVF 713 (791)
T ss_pred EEEEeccCceEeeechhceeE
Confidence 444333222333334445554
No 220
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=57.33 E-value=8 Score=36.49 Aligned_cols=16 Identities=50% Similarity=0.700 Sum_probs=13.6
Q ss_pred CCCCcccEEEEecCCc
Q 038855 6 PYLSRYSVIIVDEAHE 21 (260)
Q Consensus 6 ~~L~~~~~vIlDEahe 21 (260)
....++++||+||||.
T Consensus 79 ~~~~~~DviivDEAqr 94 (352)
T PF09848_consen 79 KEKNKYDVIIVDEAQR 94 (352)
T ss_pred ccCCcCCEEEEehhHh
Confidence 4567899999999995
No 221
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=56.80 E-value=11 Score=41.27 Aligned_cols=12 Identities=50% Similarity=0.855 Sum_probs=10.6
Q ss_pred cccEEEEecCCc
Q 038855 10 RYSVIIVDEAHE 21 (260)
Q Consensus 10 ~~~~vIlDEahe 21 (260)
++.+||+||||.
T Consensus 291 ~W~~VIvDEAHr 302 (1033)
T PLN03142 291 SWRYIIIDEAHR 302 (1033)
T ss_pred CCCEEEEcCccc
Confidence 578999999995
No 222
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=56.56 E-value=16 Score=39.13 Aligned_cols=34 Identities=41% Similarity=0.542 Sum_probs=22.5
Q ss_pred CCCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhc
Q 038855 5 DPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNAR 40 (260)
Q Consensus 5 d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~ 40 (260)
.|..++++++||||+|..+ .+-.-.+||.+-+-.
T Consensus 115 ~p~~~~~KV~IIDEad~lt--~~a~NaLLK~LEEpP 148 (824)
T PRK07764 115 APAESRYKIFIIDEAHMVT--PQGFNALLKIVEEPP 148 (824)
T ss_pred chhcCCceEEEEechhhcC--HHHHHHHHHHHhCCC
Confidence 4566899999999999644 334445555554433
No 223
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=56.49 E-value=6.5 Score=39.86 Aligned_cols=33 Identities=33% Similarity=0.577 Sum_probs=24.6
Q ss_pred cCCCCCcccEEEEecCCcCCcchhHHHHHHHHHHh
Q 038855 4 LDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQN 38 (260)
Q Consensus 4 ~d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~ 38 (260)
--|.-.+|+++||||+| ++-..-.-++||.+..
T Consensus 113 y~P~~~ryKVyiIDEvH--MLS~~afNALLKTLEE 145 (515)
T COG2812 113 YAPSEGRYKVYIIDEVH--MLSKQAFNALLKTLEE 145 (515)
T ss_pred cCCccccceEEEEecHH--hhhHHHHHHHhccccc
Confidence 34778899999999999 4555556677776644
No 224
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=55.81 E-value=68 Score=34.16 Aligned_cols=58 Identities=14% Similarity=0.086 Sum_probs=48.9
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCc
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNI 214 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdi 214 (260)
+..++|-+||.+=+...++.+...... -++.+..+.|+++.++|...+. ..|+++|+-
T Consensus 97 G~~V~VvTpt~~LA~qdae~~~~l~~~-----LGLsv~~i~g~~~~~~r~~~y~------~dIvyGT~~ 154 (745)
T TIGR00963 97 GKGVHVVTVNDYLAQRDAEWMGQVYRF-----LGLSVGLILSGMSPEERREAYA------CDITYGTNN 154 (745)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhcc-----CCCeEEEEeCCCCHHHHHHhcC------CCEEEECCC
Confidence 557999999999999999998887643 3789999999999998887764 479999985
No 225
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=55.56 E-value=61 Score=35.95 Aligned_cols=96 Identities=17% Similarity=0.087 Sum_probs=73.5
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccC-------------CCCeEEEEecCCCCHHHHHHHhcccCCC----CeE
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEA-------------SRKLVTVPIFSSLPSEQQMKVFAPAAAG----FRK 207 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~-------------~~~~~~~~lh~~l~~~~r~~v~~~~~~g----~~k 207 (260)
-+.+.|||-.+....+.++..|...-..-... .++.....|-|+...++|.+.-+.|..- .+.
T Consensus 1141 IGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl 1220 (1567)
T KOG1015|consen 1141 IGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARL 1220 (1567)
T ss_pred hcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEE
Confidence 37789999999999998888887654321100 1355678899999999999998888642 467
Q ss_pred EEEecCcccccCCCCCceEEEeCCCccceeeec
Q 038855 208 VILATNIAETSVTIPGIKYVIDPGFVKARSYDP 240 (260)
Q Consensus 208 VlvaTdiae~gidIp~V~~VId~g~~~~~~yd~ 240 (260)
.||+|-....||.+-...-||=+.-.=.++||.
T Consensus 1221 ~LISTRAGsLGiNLvAANRVIIfDasWNPSyDt 1253 (1567)
T KOG1015|consen 1221 FLISTRAGSLGINLVAANRVIIFDASWNPSYDT 1253 (1567)
T ss_pred EEEeeccCccccceeecceEEEEecccCCccch
Confidence 899999999999998777777666655677774
No 226
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.80 E-value=14 Score=38.89 Aligned_cols=30 Identities=30% Similarity=0.555 Sum_probs=20.4
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHH
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQ 37 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~ 37 (260)
|...+++++||||+|..+ ..-.-.+||.+-
T Consensus 120 P~~gr~KViIIDEah~Ls--~~AaNALLKTLE 149 (700)
T PRK12323 120 PTAGRFKVYMIDEVHMLT--NHAFNAMLKTLE 149 (700)
T ss_pred hhcCCceEEEEEChHhcC--HHHHHHHHHhhc
Confidence 456689999999999543 334455666543
No 227
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=54.05 E-value=37 Score=38.41 Aligned_cols=129 Identities=19% Similarity=0.145 Sum_probs=71.4
Q ss_pred CceEEEEeccC-CHHHHHhhhCCCcEEEe--cCceeeeeEEEeeCCCcchHHH-------HHHHHHHHHhhcCCCCEEEE
Q 038855 83 PLKLIIMSASL-DARGFSEYFGCAKAVHV--QGRQFPVEILYTLYPEPDFLDA-------TLITIFQVHLDEAPGDILVF 152 (260)
Q Consensus 83 ~~qlil~SATl-~~~~~~~~~~~~~~v~v--~~~~~~v~~~~~~~~~~~~~~~-------~~~~l~~i~~~~~~g~iLVF 152 (260)
.++++.+|.++ +++.+ -++...-++.. ..+..|.+++........|... ....+.+- ...+.+.+||
T Consensus 1289 ~ir~v~ls~~lana~d~-ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~--a~~~k~~~vf 1365 (1674)
T KOG0951|consen 1289 KIRVVALSSSLANARDL-IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRH--AGNRKPAIVF 1365 (1674)
T ss_pred heeEEEeehhhccchhh-ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHH--hcCCCCeEEE
Confidence 67889999888 55555 22211122222 2334555555443333222211 11122221 2247789999
Q ss_pred eCCHHHHHHHHHHHHHHHh------------cCccC-CCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCc
Q 038855 153 LTGQEEIESVERLVQERLL------------QLPEA-SRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNI 214 (260)
Q Consensus 153 l~~~~~ve~v~~~L~~~l~------------~~~~~-~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdi 214 (260)
+|++..+..++-.+-.... ++... ...++...=|-+++...++-+-.-|..|...|+|..--
T Consensus 1366 ~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~ 1440 (1674)
T KOG0951|consen 1366 LPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD 1440 (1674)
T ss_pred eccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc
Confidence 9999998877654432211 11100 01222222288999999999988899999999887543
No 228
>PRK14873 primosome assembly protein PriA; Provisional
Probab=53.71 E-value=1e+02 Score=32.32 Aligned_cols=18 Identities=17% Similarity=0.027 Sum_probs=14.8
Q ss_pred CceEEEEeccCCHHHHHh
Q 038855 83 PLKLIIMSASLDARGFSE 100 (260)
Q Consensus 83 ~~qlil~SATl~~~~~~~ 100 (260)
...+|+.|||.+.+.+..
T Consensus 293 ~~~lvLgSaTPSles~~~ 310 (665)
T PRK14873 293 GCALLIGGHARTAEAQAL 310 (665)
T ss_pred CCcEEEECCCCCHHHHHH
Confidence 567999999999887654
No 229
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=53.50 E-value=22 Score=36.25 Aligned_cols=33 Identities=30% Similarity=0.630 Sum_probs=22.7
Q ss_pred CCCCCcccEEEEecCCcCCcchhHHHHHHHHHHhh
Q 038855 5 DPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNA 39 (260)
Q Consensus 5 d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~ 39 (260)
-|...+++++||||||..+ .+-.-++|+.+-.-
T Consensus 112 ~P~~~~~KVvIIDEad~Lt--~~A~NALLK~LEEp 144 (535)
T PRK08451 112 KPSMARFKIFIIDEVHMLT--KEAFNALLKTLEEP 144 (535)
T ss_pred CcccCCeEEEEEECcccCC--HHHHHHHHHHHhhc
Confidence 3667899999999998643 34455566655443
No 230
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=53.40 E-value=22 Score=39.17 Aligned_cols=21 Identities=19% Similarity=0.610 Sum_probs=16.5
Q ss_pred CceEEEEeccC-CHHHHHhhhC
Q 038855 83 PLKLIIMSASL-DARGFSEYFG 103 (260)
Q Consensus 83 ~~qlil~SATl-~~~~~~~~~~ 103 (260)
++-++..|||+ ++..+.+|+.
T Consensus 661 ~CP~L~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 661 PCPFLVLSATIGNPNLFQKWLN 682 (1330)
T ss_pred CCCeeEEecccCCHHHHHHHHH
Confidence 45579999999 7888888775
No 231
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=53.24 E-value=46 Score=36.43 Aligned_cols=59 Identities=20% Similarity=0.283 Sum_probs=48.1
Q ss_pred CCCE-EEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC
Q 038855 146 PGDI-LVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN 213 (260)
Q Consensus 146 ~g~i-LVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd 213 (260)
.|++ ||-+||++-+.++.+.+..++.. .++.++..+|+-..+++...+ +.| .-|+|||+
T Consensus 437 dGPi~li~aPtrela~QI~r~~~kf~k~-----l~ir~v~vygg~~~~~qiael---kRg-~eIvV~tp 496 (997)
T KOG0334|consen 437 DGPIALILAPTRELAMQIHREVRKFLKL-----LGIRVVCVYGGSGISQQIAEL---KRG-AEIVVCTP 496 (997)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHHhh-----cCceEEEecCCccHHHHHHHH---hcC-CceEEecc
Confidence 4565 88899999999999999988654 488899999999999886655 455 57888886
No 232
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=53.01 E-value=18 Score=29.98 Aligned_cols=46 Identities=17% Similarity=0.214 Sum_probs=33.1
Q ss_pred HHHhcccCCCC---eEEEEecCc--ccccCCCCC--ceEEEeCCCccceeeec
Q 038855 195 MKVFAPAAAGF---RKVILATNI--AETSVTIPG--IKYVIDPGFVKARSYDP 240 (260)
Q Consensus 195 ~~v~~~~~~g~---~kVlvaTdi--ae~gidIp~--V~~VId~g~~~~~~yd~ 240 (260)
.++++.|+... .-||+|+.- ..=|||+|+ .+.||=.|+|.....||
T Consensus 34 ~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~ 86 (142)
T smart00491 34 EELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSP 86 (142)
T ss_pred HHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCH
Confidence 45555555432 268888876 788999997 68999999987655554
No 233
>PRK08727 hypothetical protein; Validated
Probab=52.93 E-value=25 Score=31.25 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=12.5
Q ss_pred CCcccEEEEecCCcCC
Q 038855 8 LSRYSVIIVDEAHERT 23 (260)
Q Consensus 8 L~~~~~vIlDEaher~ 23 (260)
+.++.+|||||+|.-.
T Consensus 91 l~~~dlLiIDDi~~l~ 106 (233)
T PRK08727 91 LEGRSLVALDGLESIA 106 (233)
T ss_pred HhcCCEEEEeCccccc
Confidence 4577899999998543
No 234
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=52.92 E-value=79 Score=34.08 Aligned_cols=70 Identities=14% Similarity=0.223 Sum_probs=53.5
Q ss_pred HHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC
Q 038855 137 IFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN 213 (260)
Q Consensus 137 l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd 213 (260)
+++-+........|++-|+++=+..=.+.|.+.+...+. ++.+..++|+.+.++|+.++. +...||++++
T Consensus 106 Ild~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~---~v~~~~y~Gdt~~~~r~~~~~----~pp~IllTNp 175 (851)
T COG1205 106 ILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPG---KVTFGRYTGDTPPEERRAIIR----NPPDILLTNP 175 (851)
T ss_pred HHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCC---cceeeeecCCCChHHHHHHHh----CCCCEEEeCH
Confidence 333334444557899999999998888888887766543 789999999999999986664 4457888875
No 235
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=52.41 E-value=17 Score=36.64 Aligned_cols=29 Identities=31% Similarity=0.510 Sum_probs=20.4
Q ss_pred CCCcccEEEEecCCcCCcchhHHHHHHHHHH
Q 038855 7 YLSRYSVIIVDEAHERTVHTDVLLGLLKKVQ 37 (260)
Q Consensus 7 ~L~~~~~vIlDEaher~~~~d~ll~~lk~~~ 37 (260)
.-.+++++||||||. +..+..-++|+.+-
T Consensus 118 ~~g~~KV~IIDEah~--Ls~~A~NALLKtLE 146 (484)
T PRK14956 118 MGGKYKVYIIDEVHM--LTDQSFNALLKTLE 146 (484)
T ss_pred hcCCCEEEEEechhh--cCHHHHHHHHHHhh
Confidence 345789999999994 44455666666663
No 236
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=52.39 E-value=18 Score=36.40 Aligned_cols=32 Identities=31% Similarity=0.490 Sum_probs=21.3
Q ss_pred CCCCCcccEEEEecCCcCCcchhHHHHHHHHHHh
Q 038855 5 DPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQN 38 (260)
Q Consensus 5 d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~ 38 (260)
-|..++++++|+||+|.. ...-.-+++|.+..
T Consensus 111 ~P~~~~~KVvIIDEah~L--s~~A~NaLLK~LEe 142 (491)
T PRK14964 111 LPISSKFKVYIIDEVHML--SNSAFNALLKTLEE 142 (491)
T ss_pred ccccCCceEEEEeChHhC--CHHHHHHHHHHHhC
Confidence 366789999999999953 33334455555543
No 237
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=52.39 E-value=34 Score=35.18 Aligned_cols=31 Identities=48% Similarity=0.599 Sum_probs=21.6
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHHh
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQN 38 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~ 38 (260)
|...+++++||||+|.. ..+-.-.+||.+-.
T Consensus 114 P~~~~~KVvIIDEah~L--t~~A~NALLK~LEE 144 (584)
T PRK14952 114 PAQSRYRIFIVDEAHMV--TTAGFNALLKIVEE 144 (584)
T ss_pred hhcCCceEEEEECCCcC--CHHHHHHHHHHHhc
Confidence 56689999999999953 34445555665544
No 238
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=52.17 E-value=20 Score=38.33 Aligned_cols=31 Identities=29% Similarity=0.533 Sum_probs=20.0
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHHh
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQN 38 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~ 38 (260)
|.-.+++++||||+|..+ ..-.-.+||.+-.
T Consensus 115 P~~gr~KVIIIDEah~LT--~~A~NALLKtLEE 145 (830)
T PRK07003 115 PVDARFKVYMIDEVHMLT--NHAFNAMLKTLEE 145 (830)
T ss_pred cccCCceEEEEeChhhCC--HHHHHHHHHHHHh
Confidence 344679999999999533 3334455665443
No 239
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.41 E-value=27 Score=36.21 Aligned_cols=29 Identities=31% Similarity=0.574 Sum_probs=19.2
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHH
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKV 36 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~ 36 (260)
|...+++++||||+|..+ .+-.-.+||.+
T Consensus 120 p~~g~~KV~IIDEvh~Ls--~~a~NaLLKtL 148 (618)
T PRK14951 120 PVQGRFKVFMIDEVHMLT--NTAFNAMLKTL 148 (618)
T ss_pred cccCCceEEEEEChhhCC--HHHHHHHHHhc
Confidence 556789999999999533 33344455444
No 240
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.14 E-value=21 Score=35.95 Aligned_cols=31 Identities=29% Similarity=0.514 Sum_probs=20.7
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHHh
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQN 38 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~ 38 (260)
|.-.+++++||||+|..+ .+-.-++||.+-.
T Consensus 115 p~~~~~kV~iIDE~~~ls--~~a~naLLk~LEe 145 (509)
T PRK14958 115 PTKGRFKVYLIDEVHMLS--GHSFNALLKTLEE 145 (509)
T ss_pred cccCCcEEEEEEChHhcC--HHHHHHHHHHHhc
Confidence 445689999999999533 3445556665544
No 241
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=50.37 E-value=20 Score=30.33 Aligned_cols=30 Identities=27% Similarity=0.341 Sum_probs=19.5
Q ss_pred CCCCCcccEEEEecCCcCCcchhHHHHHHHHH
Q 038855 5 DPYLSRYSVIIVDEAHERTVHTDVLLGLLKKV 36 (260)
Q Consensus 5 d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~ 36 (260)
.|.....++|||||+|..+. +..-.+++.+
T Consensus 91 ~~~~~~~kviiide~~~l~~--~~~~~Ll~~l 120 (188)
T TIGR00678 91 TPQESGRRVVIIEDAERMNE--AAANALLKTL 120 (188)
T ss_pred CcccCCeEEEEEechhhhCH--HHHHHHHHHh
Confidence 46678899999999986332 2333444444
No 242
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=50.02 E-value=56 Score=36.36 Aligned_cols=79 Identities=11% Similarity=0.160 Sum_probs=67.5
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC-cccccCCCCC
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN-IAETSVTIPG 223 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd-iae~gidIp~ 223 (260)
++.++.|.+||.==+++-++-+.++...+ .+.+..+..=.+..++..+++..++|+..|||-|- +...+|..-|
T Consensus 642 ~GKQVAvLVPTTlLA~QHy~tFkeRF~~f-----PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~Fkd 716 (1139)
T COG1197 642 DGKQVAVLVPTTLLAQQHYETFKERFAGF-----PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKD 716 (1139)
T ss_pred CCCeEEEEcccHHhHHHHHHHHHHHhcCC-----CeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEec
Confidence 35789999999999999999999987654 56677787778899999999999999999999986 5677788888
Q ss_pred ceEEE
Q 038855 224 IKYVI 228 (260)
Q Consensus 224 V~~VI 228 (260)
+..||
T Consensus 717 LGLlI 721 (1139)
T COG1197 717 LGLLI 721 (1139)
T ss_pred CCeEE
Confidence 88776
No 243
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=49.90 E-value=37 Score=28.47 Aligned_cols=35 Identities=34% Similarity=0.528 Sum_probs=22.1
Q ss_pred CCCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhcc
Q 038855 5 DPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARS 41 (260)
Q Consensus 5 d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~ 41 (260)
.|.-..++++|+||||.++ .+---++||.+-.-+.
T Consensus 97 ~~~~~~~KviiI~~ad~l~--~~a~NaLLK~LEepp~ 131 (162)
T PF13177_consen 97 SPSEGKYKVIIIDEADKLT--EEAQNALLKTLEEPPE 131 (162)
T ss_dssp S-TTSSSEEEEEETGGGS---HHHHHHHHHHHHSTTT
T ss_pred HHhcCCceEEEeehHhhhh--HHHHHHHHHHhcCCCC
Confidence 4555789999999998644 3445556666654433
No 244
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.78 E-value=27 Score=38.02 Aligned_cols=31 Identities=29% Similarity=0.505 Sum_probs=21.0
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHHh
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQN 38 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~ 38 (260)
|.-.+++++||||||.. ..+..-.+||.+-.
T Consensus 115 P~~gk~KViIIDEAh~L--T~eAqNALLKtLEE 145 (944)
T PRK14949 115 PSRGRFKVYLIDEVHML--SRSSFNALLKTLEE 145 (944)
T ss_pred hhcCCcEEEEEechHhc--CHHHHHHHHHHHhc
Confidence 33467899999999953 34455566665544
No 245
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=47.90 E-value=63 Score=27.61 Aligned_cols=17 Identities=12% Similarity=0.245 Sum_probs=12.6
Q ss_pred CCcccEEEEecCCcCCc
Q 038855 8 LSRYSVIIVDEAHERTV 24 (260)
Q Consensus 8 L~~~~~vIlDEaher~~ 24 (260)
+.+.++|||||+|.-..
T Consensus 88 ~~~~~lLvIDdi~~l~~ 104 (226)
T TIGR03420 88 LEQADLVCLDDVEAIAG 104 (226)
T ss_pred cccCCEEEEeChhhhcC
Confidence 45668999999996433
No 246
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=47.67 E-value=51 Score=23.35 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=36.4
Q ss_pred EEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccc
Q 038855 149 ILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAET 217 (260)
Q Consensus 149 iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~ 217 (260)
.|+.+-+..++..+..... .+..++...|.....+..+.++.+.+. .+|++|+|--..
T Consensus 2 ~l~ivEg~~da~~~~~~~~----------~~~~~~~~~G~~~~~~~~~~l~~~~~~-~~Iii~~D~D~~ 59 (76)
T smart00493 2 VLIIVEGPADAIALEKAGG----------FGGNVVALGGHLLKKEIIKLLKRLAKK-KEVILATDPDRE 59 (76)
T ss_pred EEEEEcCHHHHHHHHHhcC----------CCEEEEEEeeeecHHHHHHHHHHHhcC-CEEEEEcCCChh
Confidence 4666777777766555442 145677777766555556666665444 679999985433
No 247
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=47.54 E-value=4.3e+02 Score=29.23 Aligned_cols=73 Identities=11% Similarity=0.124 Sum_probs=41.8
Q ss_pred CCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceE
Q 038855 147 GDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKY 226 (260)
Q Consensus 147 g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~ 226 (260)
..++|.+|+..++..+...+++.+...........+..-.|. ..|..|- +|++..|--+.|+-=.++-.
T Consensus 557 ~~~lVLaptn~~v~~LN~~iR~~L~~~G~lg~~~~~~~~~g~----------r~~~vGD-rVm~~rNd~~lgV~NGd~Gt 625 (988)
T PRK13889 557 RSRIILTHTNDEVRALNEAARERMRAAGDLGDDVRVTVERGE----------RSFASGD-RVMFLQNERGLGVKNGTLGT 625 (988)
T ss_pred ccEEEEcCCcccHHHHHHHHHHHhhccCCccccceeccccCC----------ccccCCC-EEEEeecCCcCCEeCCCeEE
Confidence 578999999999999999999987532111001111111111 1355555 56666665555555555555
Q ss_pred EEeC
Q 038855 227 VIDP 230 (260)
Q Consensus 227 VId~ 230 (260)
|+..
T Consensus 626 V~~I 629 (988)
T PRK13889 626 IEQV 629 (988)
T ss_pred EEEe
Confidence 5544
No 248
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=47.50 E-value=1.1e+02 Score=33.45 Aligned_cols=57 Identities=7% Similarity=0.121 Sum_probs=47.5
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN 213 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd 213 (260)
+..++|-.||.+=+...++.+.....- -++.+..+.|+++..+|...+. ..|+++|+
T Consensus 123 G~~V~VvTpn~yLA~qd~e~m~~l~~~-----lGLtv~~i~gg~~~~~r~~~y~------~dIvygT~ 179 (896)
T PRK13104 123 GRGVHIVTVNDYLAKRDSQWMKPIYEF-----LGLTVGVIYPDMSHKEKQEAYK------ADIVYGTN 179 (896)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhcc-----cCceEEEEeCCCCHHHHHHHhC------CCEEEECC
Confidence 456999999999999999999887543 3789999999999999877763 46999998
No 249
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=47.06 E-value=20 Score=38.25 Aligned_cols=14 Identities=36% Similarity=0.646 Sum_probs=12.0
Q ss_pred CCcccEEEEecCCc
Q 038855 8 LSRYSVIIVDEAHE 21 (260)
Q Consensus 8 L~~~~~vIlDEahe 21 (260)
+..++++|+||.|.
T Consensus 374 ~~~~glLVcDEGHr 387 (776)
T KOG0390|consen 374 LIRPGLLVCDEGHR 387 (776)
T ss_pred cCCCCeEEECCCCC
Confidence 46789999999994
No 250
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=47.06 E-value=27 Score=36.82 Aligned_cols=31 Identities=29% Similarity=0.581 Sum_probs=20.9
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHHh
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQN 38 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~ 38 (260)
|.+.++++|||||+|. +.....-.+||.+..
T Consensus 115 P~~gk~KVIIIDEad~--Ls~~A~NALLKtLEE 145 (709)
T PRK08691 115 PTAGKYKVYIIDEVHM--LSKSAFNAMLKTLEE 145 (709)
T ss_pred hhhCCcEEEEEECccc--cCHHHHHHHHHHHHh
Confidence 4567889999999995 333444556666544
No 251
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=46.70 E-value=21 Score=36.81 Aligned_cols=58 Identities=14% Similarity=0.068 Sum_probs=38.2
Q ss_pred CEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC
Q 038855 148 DILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN 213 (260)
Q Consensus 148 ~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd 213 (260)
-.||.+||++-|.+.++.+++++..+.+- ++...+-|..-..|..++ ....+|||+|+
T Consensus 213 ~ALVivPTREL~~Q~y~~~qKLl~~~hWI---VPg~lmGGEkkKSEKARL-----RKGiNILIgTP 270 (708)
T KOG0348|consen 213 YALVIVPTRELALQIYETVQKLLKPFHWI---VPGVLMGGEKKKSEKARL-----RKGINILIGTP 270 (708)
T ss_pred eEEEEechHHHHHHHHHHHHHHhcCceEE---eeceeecccccccHHHHH-----hcCceEEEcCc
Confidence 46999999999999999999987533221 122334444444444333 34568999997
No 252
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=45.99 E-value=30 Score=33.08 Aligned_cols=31 Identities=16% Similarity=0.350 Sum_probs=21.5
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHHh
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQN 38 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~ 38 (260)
+.-.++++|||||||.. +..-..++||.+-.
T Consensus 137 ~~~g~~rVviIDeAd~l--~~~aanaLLk~LEE 167 (351)
T PRK09112 137 SGDGNWRIVIIDPADDM--NRNAANAILKTLEE 167 (351)
T ss_pred cccCCceEEEEEchhhc--CHHHHHHHHHHHhc
Confidence 44568999999999964 34445566766644
No 253
>PRK08181 transposase; Validated
Probab=45.78 E-value=50 Score=30.51 Aligned_cols=20 Identities=15% Similarity=0.200 Sum_probs=15.6
Q ss_pred EEEEeccCCHHHHHhhhCCC
Q 038855 86 LIIMSASLDARGFSEYFGCA 105 (260)
Q Consensus 86 lil~SATl~~~~~~~~~~~~ 105 (260)
-++++.-+.+..+.+.|++.
T Consensus 201 s~IiTSN~~~~~w~~~~~D~ 220 (269)
T PRK08181 201 SILITANQPFGEWNRVFPDP 220 (269)
T ss_pred CEEEEcCCCHHHHHHhcCCc
Confidence 47778888888888888754
No 254
>PF05729 NACHT: NACHT domain
Probab=45.60 E-value=90 Score=24.62 Aligned_cols=30 Identities=20% Similarity=0.194 Sum_probs=20.8
Q ss_pred CceEEEEeccCCHHHHHhhhCCCcEEEecC
Q 038855 83 PLKLIIMSASLDARGFSEYFGCAKAVHVQG 112 (260)
Q Consensus 83 ~~qlil~SATl~~~~~~~~~~~~~~v~v~~ 112 (260)
..++++.|.+-....+.+++.....+.+++
T Consensus 120 ~~~liit~r~~~~~~~~~~~~~~~~~~l~~ 149 (166)
T PF05729_consen 120 GVKLIITSRPRAFPDLRRRLKQAQILELEP 149 (166)
T ss_pred CCeEEEEEcCChHHHHHHhcCCCcEEEECC
Confidence 677888877766666777777665555543
No 255
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=45.25 E-value=40 Score=30.61 Aligned_cols=90 Identities=12% Similarity=0.126 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCC----CCeEEEEecCcccccCCCCCceEEEeC-
Q 038855 156 QEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAA----GFRKVILATNIAETSVTIPGIKYVIDP- 230 (260)
Q Consensus 156 ~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~----g~~kVlvaTdiae~gidIp~V~~VId~- 230 (260)
...-+.+...|...+. .++.+..+.|+-+.+. ..+.. |...|+|.=+..+||+|++|+....=+
T Consensus 93 ~~s~~ei~~~l~~~~~------~~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R 161 (239)
T PF10593_consen 93 PPSWEEIKPELPKAIS------DGIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLR 161 (239)
T ss_pred CcCHHHHHHHHHHHHh------cCceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecC
Confidence 3344445566666542 1488999997776654 23333 348899999999999999998654311
Q ss_pred -------CCccceeeecCCCceeeeEEeeehhh
Q 038855 231 -------GFVKARSYDPVKGMESLIVVPISKAQ 256 (260)
Q Consensus 231 -------g~~~~~~yd~~~g~~~l~~~~isk~~ 256 (260)
=+...+-|=.+.|-.-+...|++...
T Consensus 162 ~s~~~DTL~QmgRwFGYR~gY~dl~Ri~~~~~l 194 (239)
T PF10593_consen 162 NSKQYDTLMQMGRWFGYRPGYEDLCRIYMPEEL 194 (239)
T ss_pred CCchHHHHHHHhhcccCCcccccceEEecCHHH
Confidence 11112222245555566666666543
No 256
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=44.83 E-value=23 Score=38.51 Aligned_cols=26 Identities=8% Similarity=0.174 Sum_probs=21.5
Q ss_pred CCCCeEEEEecCcccccCCCCCceEE
Q 038855 202 AAGFRKVILATNIAETSVTIPGIKYV 227 (260)
Q Consensus 202 ~~g~~kVlvaTdiae~gidIp~V~~V 227 (260)
+....++||-+|..=+|.|-|-+...
T Consensus 590 ~~d~~kilIV~dmlLTGFDaP~L~Tm 615 (962)
T COG0610 590 KDDPLDLLIVVDMLLTGFDAPCLNTL 615 (962)
T ss_pred cCCCCCEEEEEccccccCCccccceE
Confidence 45678999999999999999976543
No 257
>PRK05642 DNA replication initiation factor; Validated
Probab=44.63 E-value=37 Score=30.21 Aligned_cols=14 Identities=21% Similarity=0.572 Sum_probs=11.3
Q ss_pred CCcccEEEEecCCc
Q 038855 8 LSRYSVIIVDEAHE 21 (260)
Q Consensus 8 L~~~~~vIlDEahe 21 (260)
+.+++++|+|++|-
T Consensus 95 ~~~~d~LiiDDi~~ 108 (234)
T PRK05642 95 LEQYELVCLDDLDV 108 (234)
T ss_pred hhhCCEEEEechhh
Confidence 45678999999984
No 258
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.77 E-value=31 Score=35.22 Aligned_cols=31 Identities=39% Similarity=0.658 Sum_probs=20.8
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHHh
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQN 38 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~ 38 (260)
|...+++++||||+|..+ .+-.-.++|.+-.
T Consensus 115 p~~~~~KVvIIdev~~Lt--~~a~naLLk~LEe 145 (576)
T PRK14965 115 PSRSRYKIFIIDEVHMLS--TNAFNALLKTLEE 145 (576)
T ss_pred cccCCceEEEEEChhhCC--HHHHHHHHHHHHc
Confidence 667899999999999533 3334455555543
No 259
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=43.37 E-value=1.2e+02 Score=30.96 Aligned_cols=72 Identities=11% Similarity=0.070 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhc-CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCC-HHHHHHHhcccCCCCeEEEE
Q 038855 133 TLITIFQVHLDE-APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLP-SEQQMKVFAPAAAGFRKVIL 210 (260)
Q Consensus 133 ~~~~l~~i~~~~-~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~-~~~r~~v~~~~~~g~~kVlv 210 (260)
+++.++..-... ++-.+||.|||++-+-+.+..+.+++.-.+ ++.+..+-|+-. +.+..+.-+ ...++|
T Consensus 140 aie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~----~~~v~~viGG~~~~~e~~kl~k-----~~nili 210 (543)
T KOG0342|consen 140 AIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHE----SITVGIVIGGNNFSVEADKLVK-----GCNILI 210 (543)
T ss_pred HHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCC----CcceEEEeCCccchHHHHHhhc-----cccEEE
Confidence 444444333322 344689999999999999988888775332 444444444443 333333322 458999
Q ss_pred ecC
Q 038855 211 ATN 213 (260)
Q Consensus 211 aTd 213 (260)
||+
T Consensus 211 ATP 213 (543)
T KOG0342|consen 211 ATP 213 (543)
T ss_pred eCC
Confidence 997
No 260
>PRK04296 thymidine kinase; Provisional
Probab=42.82 E-value=44 Score=28.67 Aligned_cols=25 Identities=16% Similarity=0.397 Sum_probs=16.1
Q ss_pred cccEEEEecCCcCCcchhHHHHHHHHH
Q 038855 10 RYSVIIVDEAHERTVHTDVLLGLLKKV 36 (260)
Q Consensus 10 ~~~~vIlDEaher~~~~d~ll~~lk~~ 36 (260)
++++|||||||- ++.+.+..+++.+
T Consensus 78 ~~dvviIDEaq~--l~~~~v~~l~~~l 102 (190)
T PRK04296 78 KIDCVLIDEAQF--LDKEQVVQLAEVL 102 (190)
T ss_pred CCCEEEEEcccc--CCHHHHHHHHHHH
Confidence 688999999962 3334344555443
No 261
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.78 E-value=37 Score=32.30 Aligned_cols=30 Identities=33% Similarity=0.551 Sum_probs=19.1
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHH
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQ 37 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~ 37 (260)
|...+++++|+||+|..+ .+-.-.+|+.+.
T Consensus 115 p~~~~~kviIIDEa~~l~--~~a~naLLk~lE 144 (363)
T PRK14961 115 PSKSRFKVYLIDEVHMLS--RHSFNALLKTLE 144 (363)
T ss_pred cccCCceEEEEEChhhcC--HHHHHHHHHHHh
Confidence 556788999999998533 222334555443
No 262
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=42.45 E-value=30 Score=37.09 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=19.3
Q ss_pred CcccEEEEecCCc-CCcchhHHHHHH
Q 038855 9 SRYSVIIVDEAHE-RTVHTDVLLGLL 33 (260)
Q Consensus 9 ~~~~~vIlDEahe-r~~~~d~ll~~l 33 (260)
..+.++||||.|. |.+++..-++..
T Consensus 336 ~~W~y~ILDEGH~IrNpns~islack 361 (923)
T KOG0387|consen 336 ILWDYVILDEGHRIRNPNSKISLACK 361 (923)
T ss_pred ccccEEEecCcccccCCccHHHHHHH
Confidence 3789999999996 677777666543
No 263
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.31 E-value=37 Score=34.26 Aligned_cols=32 Identities=28% Similarity=0.500 Sum_probs=21.3
Q ss_pred CCCCCcccEEEEecCCcCCcchhHHHHHHHHHHh
Q 038855 5 DPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQN 38 (260)
Q Consensus 5 d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~ 38 (260)
.|...+++++||||+|..+. .-.-.+||.+..
T Consensus 114 ~p~~~~~kVvIIDEad~ls~--~a~naLLK~LEe 145 (527)
T PRK14969 114 APTRGRFKVYIIDEVHMLSK--SAFNAMLKTLEE 145 (527)
T ss_pred CcccCCceEEEEcCcccCCH--HHHHHHHHHHhC
Confidence 46677899999999995432 234455665544
No 264
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=41.34 E-value=1.6e+02 Score=32.36 Aligned_cols=55 Identities=16% Similarity=0.123 Sum_probs=45.2
Q ss_pred CEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC
Q 038855 148 DILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN 213 (260)
Q Consensus 148 ~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd 213 (260)
.++|.+||++=+...++.+...... -++.+..+.|+++.++|.+.+. ..|+++|+
T Consensus 137 ~v~IVTpTrELA~Qdae~m~~L~k~-----lGLsV~~i~GG~~~~eq~~~y~------~DIVygTP 191 (970)
T PRK12899 137 PVHLVTVNDYLAQRDCEWVGSVLRW-----LGLTTGVLVSGSPLEKRKEIYQ------CDVVYGTA 191 (970)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhh-----cCCeEEEEeCCCCHHHHHHHcC------CCEEEECC
Confidence 4788899999999999998886432 3688999999999999876652 46999998
No 265
>PHA02653 RNA helicase NPH-II; Provisional
Probab=41.29 E-value=1e+02 Score=32.34 Aligned_cols=75 Identities=12% Similarity=-0.050 Sum_probs=47.8
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCce
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIK 225 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~ 225 (260)
.++++|-+|+++-+..+...+.+.++-. ...+.++...+|+.++....... ....++++|.-.. --.+.+++
T Consensus 222 ~~~ilvt~PrreLa~qi~~~i~~~vg~~--~~~g~~v~v~~Gg~~~~~~~t~~-----k~~~Ilv~T~~L~-l~~L~~v~ 293 (675)
T PHA02653 222 ERPIVLSLPRVALVRLHSITLLKSLGFD--EIDGSPISLKYGSIPDELINTNP-----KPYGLVFSTHKLT-LNKLFDYG 293 (675)
T ss_pred CcEEEEECcHHHHHHHHHHHHHHHhCcc--ccCCceEEEEECCcchHHhhccc-----CCCCEEEEeCccc-ccccccCC
Confidence 5689999999999888888877654321 12356778889999853322111 1346999985220 01355677
Q ss_pred EEE
Q 038855 226 YVI 228 (260)
Q Consensus 226 ~VI 228 (260)
+||
T Consensus 294 ~VV 296 (675)
T PHA02653 294 TVI 296 (675)
T ss_pred EEE
Confidence 776
No 266
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.25 E-value=32 Score=36.27 Aligned_cols=31 Identities=32% Similarity=0.582 Sum_probs=20.0
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHHh
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQN 38 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~ 38 (260)
|...+++++||||+|. +...-.-.++|.+..
T Consensus 114 P~~gk~KV~IIDEVh~--LS~~A~NALLKtLEE 144 (702)
T PRK14960 114 PTQGRFKVYLIDEVHM--LSTHSFNALLKTLEE 144 (702)
T ss_pred hhcCCcEEEEEechHh--cCHHHHHHHHHHHhc
Confidence 4456889999999994 333344455555443
No 267
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=41.23 E-value=36 Score=35.12 Aligned_cols=32 Identities=38% Similarity=0.592 Sum_probs=21.1
Q ss_pred CCCCCcccEEEEecCCcCCcchhHHHHHHHHHHh
Q 038855 5 DPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQN 38 (260)
Q Consensus 5 d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~ 38 (260)
-|...++++|||||+|..+ ..-.-.+||.+..
T Consensus 127 ~P~~a~~KVvIIDEad~Ls--~~a~naLLKtLEe 158 (598)
T PRK09111 127 RPVSARYKVYIIDEVHMLS--TAAFNALLKTLEE 158 (598)
T ss_pred chhcCCcEEEEEEChHhCC--HHHHHHHHHHHHh
Confidence 3667899999999998643 2334445555443
No 268
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=41.23 E-value=37 Score=32.65 Aligned_cols=33 Identities=27% Similarity=0.393 Sum_probs=23.2
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhc
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNAR 40 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~ 40 (260)
+.-..+++|||||+|. ++..-...+||.+...+
T Consensus 137 ~~~~~~kVviIDead~--m~~~aanaLLK~LEepp 169 (365)
T PRK07471 137 AAEGGWRVVIVDTADE--MNANAANALLKVLEEPP 169 (365)
T ss_pred cccCCCEEEEEechHh--cCHHHHHHHHHHHhcCC
Confidence 5557889999999985 34455666777665433
No 269
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=40.93 E-value=3.4e+02 Score=29.17 Aligned_cols=116 Identities=16% Similarity=0.220 Sum_probs=60.7
Q ss_pred eeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHH--HhcCccCCCCeEEEEecCCCCHH
Q 038855 115 FPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQER--LLQLPEASRKLVTVPIFSSLPSE 192 (260)
Q Consensus 115 ~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~--l~~~~~~~~~~~~~~lh~~l~~~ 192 (260)
-|.+..|.....+..+......+..+.. .-||-+++|+|+.+-...+.+.+.+. +... .+-+-+..-+.-+.+
T Consensus 599 ~p~eftf~~R~s~~~l~~l~~~~~nL~~-~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri----~~kK~vF~E~k~~~~ 673 (821)
T KOG1133|consen 599 QPLEFTFETRESPEMIKDLGSSISNLSN-AVPGGVVCFFPSYAYLGQVRKRWEQNGILARI----VGKKKVFYEPKDTVE 673 (821)
T ss_pred CceEEEeeccCChHHHHHHHHHHHHHHh-hCCCcEEEEeccHHHHHHHHHHHHhcchHHHh----hccchhhccCcccHH
Confidence 3556666655566655544443333443 44799999999999988888877631 0000 011222222233323
Q ss_pred HHHHHhc-ccCCCCeEEEEe--cCcccccCCCCC--ceEEEeCCCccc
Q 038855 193 QQMKVFA-PAAAGFRKVILA--TNIAETSVTIPG--IKYVIDPGFVKA 235 (260)
Q Consensus 193 ~r~~v~~-~~~~g~~kVlva--Tdiae~gidIp~--V~~VId~g~~~~ 235 (260)
+-..-++ +...|.--+|+| -.-.+-||...| -+.||=.|+|.-
T Consensus 674 dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 674 DVLEGYAEAAERGRGAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYP 721 (821)
T ss_pred HHHHHHHHHhhcCCCeEEEEEeccccccccccccccccEEEEeecCCC
Confidence 2222221 122344345544 344455777643 367777787764
No 270
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=40.93 E-value=40 Score=34.11 Aligned_cols=83 Identities=11% Similarity=0.223 Sum_probs=57.8
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCc-----ccccCC
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNI-----AETSVT 220 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdi-----ae~gid 220 (260)
....+|.+||++-+.+++..++++..-|+ ..++++-+-++++.+...-++ .+...|+|+|+- ++.|+-
T Consensus 93 ~~sa~iLvPTkEL~qQvy~viekL~~~c~---k~lr~~nl~s~~sdsv~~~~L----~d~pdIvV~TP~~ll~~~~~~~~ 165 (569)
T KOG0346|consen 93 GPSAVILVPTKELAQQVYKVIEKLVEYCS---KDLRAINLASSMSDSVNSVAL----MDLPDIVVATPAKLLRHLAAGVL 165 (569)
T ss_pred cceeEEEechHHHHHHHHHHHHHHHHHHH---HhhhhhhhhcccchHHHHHHH----ccCCCeEEeChHHHHHHHhhccc
Confidence 44679999999999999998888765443 356777788788877655444 355689999983 445541
Q ss_pred ----------CCCceEEEeCCCccc
Q 038855 221 ----------IPGIKYVIDPGFVKA 235 (260)
Q Consensus 221 ----------Ip~V~~VId~g~~~~ 235 (260)
+..++.+..+|+.+.
T Consensus 166 ~~~~~l~~LVvDEADLllsfGYeed 190 (569)
T KOG0346|consen 166 EYLDSLSFLVVDEADLLLSFGYEED 190 (569)
T ss_pred hhhhheeeEEechhhhhhhcccHHH
Confidence 245555666777664
No 271
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=40.51 E-value=1.2e+02 Score=31.85 Aligned_cols=103 Identities=12% Similarity=0.144 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhhcCCC-CEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHH-HHHHHhcccCCCCeEEE
Q 038855 132 ATLITIFQVHLDEAPG-DILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSE-QQMKVFAPAAAGFRKVI 209 (260)
Q Consensus 132 ~~~~~l~~i~~~~~~g-~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~-~r~~v~~~~~~g~~kVl 209 (260)
-.+..|+..-.....| -+||..||++-+-+.++.|.+.-. ...|++..+-|+..-. ++.++ ...+||
T Consensus 126 PvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk-----~h~fSaGLiiGG~~~k~E~eRi------~~mNIL 194 (758)
T KOG0343|consen 126 PVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGK-----HHDFSAGLIIGGKDVKFELERI------SQMNIL 194 (758)
T ss_pred HHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhh-----ccccccceeecCchhHHHHHhh------hcCCeE
Confidence 3444444433333233 579999999999999999987532 2467788888888755 33333 456899
Q ss_pred EecCc-------ccccCCC--------CCceEEEeCCCccc----eeeecCCCce
Q 038855 210 LATNI-------AETSVTI--------PGIKYVIDPGFVKA----RSYDPVKGME 245 (260)
Q Consensus 210 vaTdi-------ae~gidI--------p~V~~VId~g~~~~----~~yd~~~g~~ 245 (260)
|||+= -.-++.- ...+-++|+||.+. .+|-|...-+
T Consensus 195 VCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQT 249 (758)
T KOG0343|consen 195 VCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQT 249 (758)
T ss_pred EechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhhee
Confidence 99971 0112222 34455668888775 2455555544
No 272
>PRK08084 DNA replication initiation factor; Provisional
Probab=40.44 E-value=36 Score=30.23 Aligned_cols=14 Identities=14% Similarity=0.254 Sum_probs=11.0
Q ss_pred CcccEEEEecCCcC
Q 038855 9 SRYSVIIVDEAHER 22 (260)
Q Consensus 9 ~~~~~vIlDEaher 22 (260)
.+++++||||+|.-
T Consensus 96 ~~~dlliiDdi~~~ 109 (235)
T PRK08084 96 EQLSLVCIDNIECI 109 (235)
T ss_pred hhCCEEEEeChhhh
Confidence 45679999999853
No 273
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=40.42 E-value=98 Score=31.88 Aligned_cols=75 Identities=11% Similarity=0.055 Sum_probs=50.3
Q ss_pred CCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHH-HHHHhcccCCCCeEEEEecCc-------cccc
Q 038855 147 GDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQ-QMKVFAPAAAGFRKVILATNI-------AETS 218 (260)
Q Consensus 147 g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~-r~~v~~~~~~g~~kVlvaTdi-------ae~g 218 (260)
=.++|.+|+++-+-+|+..+..... ..++.++.+-|.-+-+. ..+.....+.-+..|||||+= +--|
T Consensus 216 LRavVivPtr~L~~QV~~~f~~~~~-----~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~ 290 (620)
T KOG0350|consen 216 LRAVVIVPTRELALQVYDTFKRLNS-----GTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKS 290 (620)
T ss_pred eEEEEEeeHHHHHHHHHHHHHHhcc-----CCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCC
Confidence 3689999999999999999988643 25778877776555443 233333333346689999982 2345
Q ss_pred CCCCCceE
Q 038855 219 VTIPGIKY 226 (260)
Q Consensus 219 idIp~V~~ 226 (260)
++...++|
T Consensus 291 f~Lk~Lrf 298 (620)
T KOG0350|consen 291 FDLKHLRF 298 (620)
T ss_pred cchhhceE
Confidence 55555555
No 274
>PF13173 AAA_14: AAA domain
Probab=40.18 E-value=43 Score=26.53 Aligned_cols=27 Identities=22% Similarity=0.151 Sum_probs=16.4
Q ss_pred cccEEEEecCCcCCcchhHHHHHHHHHHhhc
Q 038855 10 RYSVIIVDEAHERTVHTDVLLGLLKKVQNAR 40 (260)
Q Consensus 10 ~~~~vIlDEaher~~~~d~ll~~lk~~~~~~ 40 (260)
+-.+|+|||+|. .. + +...++.+....
T Consensus 61 ~~~~i~iDEiq~-~~--~-~~~~lk~l~d~~ 87 (128)
T PF13173_consen 61 GKKYIFIDEIQY-LP--D-WEDALKFLVDNG 87 (128)
T ss_pred CCcEEEEehhhh-hc--c-HHHHHHHHHHhc
Confidence 557899999984 22 2 344555554433
No 275
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=39.80 E-value=1.7e+02 Score=31.49 Aligned_cols=59 Identities=10% Similarity=0.069 Sum_probs=47.6
Q ss_pred cCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCC-HHHHHHHhcccCCCCeEEEEecC
Q 038855 144 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLP-SEQQMKVFAPAAAGFRKVILATN 213 (260)
Q Consensus 144 ~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~-~~~r~~v~~~~~~g~~kVlvaTd 213 (260)
..+..++|..||.+=+..-++.+...+.- -++.+..+.|+++ .++|...+. ..|+++|+
T Consensus 117 l~G~~v~VvTpt~~LA~qd~e~~~~l~~~-----lGl~v~~i~g~~~~~~~r~~~y~------~dIvygT~ 176 (790)
T PRK09200 117 LEGKGVHLITVNDYLAKRDAEEMGQVYEF-----LGLTVGLNFSDIDDASEKKAIYE------ADIIYTTN 176 (790)
T ss_pred HcCCCeEEEeCCHHHHHHHHHHHHHHHhh-----cCCeEEEEeCCCCcHHHHHHhcC------CCEEEECC
Confidence 34678999999999999988888877643 3889999999999 887776543 46999996
No 276
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=39.71 E-value=72 Score=32.27 Aligned_cols=31 Identities=26% Similarity=0.485 Sum_probs=20.6
Q ss_pred CCCCCcccEEEEecCCcCCcchhHHHHHHHHHH
Q 038855 5 DPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQ 37 (260)
Q Consensus 5 d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~ 37 (260)
.|...+++++||||+|..+ ..-...+++.+.
T Consensus 123 ~P~~~~~KVvIIDEa~~Ls--~~a~naLLk~LE 153 (507)
T PRK06645 123 KPLQGKHKIFIIDEVHMLS--KGAFNALLKTLE 153 (507)
T ss_pred ccccCCcEEEEEEChhhcC--HHHHHHHHHHHh
Confidence 4677899999999999533 333444555443
No 277
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=39.69 E-value=39 Score=33.38 Aligned_cols=30 Identities=33% Similarity=0.367 Sum_probs=18.6
Q ss_pred cccEEEEecCCcCCcchhHHHHHHHHHHhhcc
Q 038855 10 RYSVIIVDEAHERTVHTDVLLGLLKKVQNARS 41 (260)
Q Consensus 10 ~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~ 41 (260)
+.+++|+||+|+.. .+-+...++.-+..++
T Consensus 123 ~~~~~i~DE~h~~~--~~~~~~~l~~g~~~r~ 152 (477)
T PF03354_consen 123 NPSLAIFDELHAHK--DDELYDALESGMGARP 152 (477)
T ss_pred CCceEEEeCCCCCC--CHHHHHHHHhhhccCC
Confidence 56899999999732 2224555555444444
No 278
>PRK00254 ski2-like helicase; Provisional
Probab=38.79 E-value=2.1e+02 Score=29.84 Aligned_cols=71 Identities=17% Similarity=0.168 Sum_probs=48.7
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC-----ccccc-
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN-----IAETS- 218 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd-----iae~g- 218 (260)
..+++|+.+|+++-+.+.++.+... .. -++.+..++|+.+...+. + +...|+|+|+ +..++
T Consensus 67 ~~~~~l~l~P~~aLa~q~~~~~~~~-~~-----~g~~v~~~~Gd~~~~~~~--~-----~~~~IiV~Tpe~~~~ll~~~~ 133 (720)
T PRK00254 67 EGGKAVYLVPLKALAEEKYREFKDW-EK-----LGLRVAMTTGDYDSTDEW--L-----GKYDIIIATAEKFDSLLRHGS 133 (720)
T ss_pred cCCeEEEEeChHHHHHHHHHHHHHH-hh-----cCCEEEEEeCCCCCchhh--h-----ccCCEEEEcHHHHHHHHhCCc
Confidence 4678999999999999888887753 11 367899999998764321 1 3467999994 22211
Q ss_pred CCCCCceEEE
Q 038855 219 VTIPGIKYVI 228 (260)
Q Consensus 219 idIp~V~~VI 228 (260)
..+.+|++||
T Consensus 134 ~~l~~l~lvV 143 (720)
T PRK00254 134 SWIKDVKLVV 143 (720)
T ss_pred hhhhcCCEEE
Confidence 2346777766
No 279
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=38.68 E-value=85 Score=30.67 Aligned_cols=19 Identities=16% Similarity=0.181 Sum_probs=14.0
Q ss_pred ceEEEEeccCCHHHHHhhh
Q 038855 84 LKLIIMSASLDARGFSEYF 102 (260)
Q Consensus 84 ~qlil~SATl~~~~~~~~~ 102 (260)
-.++.+|||.....+.+.|
T Consensus 288 e~~LVlsat~~~~~~~~~~ 306 (388)
T PRK12723 288 EFHLAVSSTTKTSDVKEIF 306 (388)
T ss_pred eEEEEEcCCCCHHHHHHHH
Confidence 3679999999776666544
No 280
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.47 E-value=43 Score=33.52 Aligned_cols=30 Identities=40% Similarity=0.643 Sum_probs=19.6
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHH
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQ 37 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~ 37 (260)
|..+++.++||||||..+ .+-.-.+++.+.
T Consensus 115 P~~~~~KVvIIDEad~Lt--~~a~naLLk~LE 144 (486)
T PRK14953 115 PIKGKYKVYIIDEAHMLT--KEAFNALLKTLE 144 (486)
T ss_pred cccCCeeEEEEEChhhcC--HHHHHHHHHHHh
Confidence 667889999999999533 333344455443
No 281
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=38.31 E-value=2e+02 Score=22.72 Aligned_cols=59 Identities=17% Similarity=0.069 Sum_probs=37.5
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEec
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILAT 212 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaT 212 (260)
..++||.+|+..-+..+...+...+... .......+++....+... ....+...|+++|
T Consensus 54 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~t 112 (201)
T smart00487 54 GKRVLVLVPTRELAEQWAEELKKLGPSL----GLKVVGLYGGDSKREQLR----KLESGKTDILVTT 112 (201)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHHhccC----CeEEEEEeCCcchHHHHH----HHhcCCCCEEEeC
Confidence 5789999999999998888888764321 124455566554433322 2233344788888
No 282
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=38.24 E-value=45 Score=33.97 Aligned_cols=30 Identities=37% Similarity=0.590 Sum_probs=20.5
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHH
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQ 37 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~ 37 (260)
|...+++++||||+|..+ .+-.-.+++.+.
T Consensus 115 p~~~~~kViIIDE~~~Lt--~~a~naLLKtLE 144 (559)
T PRK05563 115 PSEAKYKVYIIDEVHMLS--TGAFNALLKTLE 144 (559)
T ss_pred cccCCeEEEEEECcccCC--HHHHHHHHHHhc
Confidence 667889999999999533 334445555543
No 283
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=37.74 E-value=37 Score=35.50 Aligned_cols=31 Identities=29% Similarity=0.519 Sum_probs=21.0
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHHh
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQN 38 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~ 38 (260)
|.-.+++++||||+|..+ ..-.-.+||.+-.
T Consensus 115 p~~g~~KV~IIDEah~Ls--~~a~NALLKtLEE 145 (647)
T PRK07994 115 PARGRFKVYLIDEVHMLS--RHSFNALLKTLEE 145 (647)
T ss_pred hhcCCCEEEEEechHhCC--HHHHHHHHHHHHc
Confidence 445689999999999543 3445566665543
No 284
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=37.42 E-value=2.7e+02 Score=29.54 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=26.2
Q ss_pred HHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHH
Q 038855 137 IFQVHLDEAPGDILVFLTGQEEIESVERLVQE 168 (260)
Q Consensus 137 l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~ 168 (260)
+..-......+.+.|.|++..+|..+...|++
T Consensus 646 ii~~mkk~~~etiaVi~kt~~d~~~~~d~lre 677 (747)
T COG3973 646 IIPRMKKRGSETIAVICKTDHDCKAVMDSLRE 677 (747)
T ss_pred HHHHHHhcCCCceEEECCcHHHHHHHHHHHhh
Confidence 33344556678999999999999999999987
No 285
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.34 E-value=43 Score=32.28 Aligned_cols=19 Identities=42% Similarity=0.669 Sum_probs=15.8
Q ss_pred CCCCCcccEEEEecCCcCC
Q 038855 5 DPYLSRYSVIIVDEAHERT 23 (260)
Q Consensus 5 d~~L~~~~~vIlDEaher~ 23 (260)
.|..++++++||||+|..+
T Consensus 122 ~p~~~~~kvvIIdea~~l~ 140 (397)
T PRK14955 122 GPQKGRYRVYIIDEVHMLS 140 (397)
T ss_pred chhcCCeEEEEEeChhhCC
Confidence 4778899999999999643
No 286
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=37.24 E-value=1.3e+02 Score=30.57 Aligned_cols=80 Identities=20% Similarity=0.271 Sum_probs=56.4
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCc------ccccC
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNI------AETSV 219 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdi------ae~gi 219 (260)
...+||.+||++-+..++....+.- -.++..+.++|+-...++.+-++ +..-|++||+= .+-.|
T Consensus 294 ~p~~lvl~ptreLalqie~e~~kys------yng~ksvc~ygggnR~eqie~lk----rgveiiiatPgrlndL~~~n~i 363 (629)
T KOG0336|consen 294 GPGVLVLTPTRELALQIEGEVKKYS------YNGLKSVCVYGGGNRNEQIEDLK----RGVEIIIATPGRLNDLQMDNVI 363 (629)
T ss_pred CCceEEEeccHHHHHHHHhHHhHhh------hcCcceEEEecCCCchhHHHHHh----cCceEEeeCCchHhhhhhcCee
Confidence 4468999999998777776665431 14778888888888777766553 45578999972 34456
Q ss_pred CCCCceEEE--------eCCCccc
Q 038855 220 TIPGIKYVI--------DPGFVKA 235 (260)
Q Consensus 220 dIp~V~~VI--------d~g~~~~ 235 (260)
++..|+|+| |+||+..
T Consensus 364 ~l~siTYlVlDEADrMLDMgFEpq 387 (629)
T KOG0336|consen 364 NLASITYLVLDEADRMLDMGFEPQ 387 (629)
T ss_pred eeeeeEEEEecchhhhhcccccHH
Confidence 677888876 6777654
No 287
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=37.06 E-value=42 Score=32.37 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=19.6
Q ss_pred CCCcccEEEEecCCcCCcchhHHHHHHHHHHhh
Q 038855 7 YLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNA 39 (260)
Q Consensus 7 ~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~ 39 (260)
-.+.+++|||||+|-++-+. .+-|++....
T Consensus 126 ~~~~fKiiIlDEcdsmtsda---q~aLrr~mE~ 155 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSDA---QAALRRTMED 155 (346)
T ss_pred CCCcceEEEEechhhhhHHH---HHHHHHHHhc
Confidence 35678999999999655444 3445555443
No 288
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=36.94 E-value=21 Score=37.15 Aligned_cols=16 Identities=44% Similarity=0.602 Sum_probs=14.0
Q ss_pred CCCCcccEEEEecCCc
Q 038855 6 PYLSRYSVIIVDEAHE 21 (260)
Q Consensus 6 ~~L~~~~~vIlDEahe 21 (260)
+.|..++++|+||||.
T Consensus 202 ~iLP~~~~lIiDEAH~ 217 (636)
T TIGR03117 202 GLLPQPDILIVDEAHL 217 (636)
T ss_pred CCCCCCCEEEEeCCcc
Confidence 4678899999999993
No 289
>PRK06620 hypothetical protein; Validated
Probab=36.27 E-value=47 Score=29.28 Aligned_cols=26 Identities=15% Similarity=0.473 Sum_probs=15.7
Q ss_pred CcccEEEEecCCcCCcchhHHHHHHHHH
Q 038855 9 SRYSVIIVDEAHERTVHTDVLLGLLKKV 36 (260)
Q Consensus 9 ~~~~~vIlDEaher~~~~d~ll~~lk~~ 36 (260)
.+.++++|||+|. .....++.++..+
T Consensus 84 ~~~d~lliDdi~~--~~~~~lf~l~N~~ 109 (214)
T PRK06620 84 EKYNAFIIEDIEN--WQEPALLHIFNII 109 (214)
T ss_pred hcCCEEEEecccc--chHHHHHHHHHHH
Confidence 4568999999993 2223444444444
No 290
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=36.09 E-value=49 Score=33.16 Aligned_cols=94 Identities=21% Similarity=0.284 Sum_probs=66.9
Q ss_pred CCC-EEEEeCCHHHHHHHHHHHHHHHhcCccC-CCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCc---------
Q 038855 146 PGD-ILVFLTGQEEIESVERLVQERLLQLPEA-SRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNI--------- 214 (260)
Q Consensus 146 ~g~-iLVFl~~~~~ve~v~~~L~~~l~~~~~~-~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdi--------- 214 (260)
.|+ .||.||+++-+...+..++.....+... ...++.+.--|+++-.++.++... ...|+|||+=
T Consensus 245 EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~----GvHivVATPGRL~DmL~KK 320 (610)
T KOG0341|consen 245 EGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRR----GVHIVVATPGRLMDMLAKK 320 (610)
T ss_pred CCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhc----CeeEEEcCcchHHHHHHHh
Confidence 344 4999999998888777776665433322 235567777899999999988753 3478888872
Q ss_pred -----ccccCCCCCceEEEeCCCccc--eeeecCCC
Q 038855 215 -----AETSVTIPGIKYVIDPGFVKA--RSYDPVKG 243 (260)
Q Consensus 215 -----ae~gidIp~V~~VId~g~~~~--~~yd~~~g 243 (260)
+-|-++....+-.||.||... ..|++-+|
T Consensus 321 ~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~ 356 (610)
T KOG0341|consen 321 IMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKG 356 (610)
T ss_pred hccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhh
Confidence 346677888899999999876 23555444
No 291
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=35.68 E-value=44 Score=28.90 Aligned_cols=27 Identities=41% Similarity=0.532 Sum_probs=17.5
Q ss_pred CCcccEEEEecCCcCCcchhHHHHHHHHH
Q 038855 8 LSRYSVIIVDEAHERTVHTDVLLGLLKKV 36 (260)
Q Consensus 8 L~~~~~vIlDEaher~~~~d~ll~~lk~~ 36 (260)
+.+.++||||||- +++...+..+++.+
T Consensus 91 ~~~~~vliVDEas--mv~~~~~~~ll~~~ 117 (196)
T PF13604_consen 91 LPKKDVLIVDEAS--MVDSRQLARLLRLA 117 (196)
T ss_dssp -TSTSEEEESSGG--G-BHHHHHHHHHHS
T ss_pred CCcccEEEEeccc--ccCHHHHHHHHHHH
Confidence 6778999999994 45555555555544
No 292
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=35.66 E-value=1.2e+02 Score=29.99 Aligned_cols=59 Identities=17% Similarity=0.033 Sum_probs=44.1
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN 213 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd 213 (260)
.--.|||.||++-+-..++.+... +++ -++++..+.|+++.-.+...+.. +..|++||+
T Consensus 75 giFalvlTPTrELA~QiaEQF~al-Gk~----l~lK~~vivGG~d~i~qa~~L~~----rPHvVvatP 133 (442)
T KOG0340|consen 75 GIFALVLTPTRELALQIAEQFIAL-GKL----LNLKVSVIVGGTDMIMQAAILSD----RPHVVVATP 133 (442)
T ss_pred cceEEEecchHHHHHHHHHHHHHh-ccc----ccceEEEEEccHHHhhhhhhccc----CCCeEecCc
Confidence 345799999999999888888663 221 37789999999998877666543 446787775
No 293
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=35.01 E-value=2.3e+02 Score=30.71 Aligned_cols=65 Identities=14% Similarity=0.092 Sum_probs=51.4
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCC
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTI 221 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidI 221 (260)
....+-|..||..=+..-++.+.....- -++.+..+.|+++.++|.+.++ ..|+++|+ ++-|+|.
T Consensus 121 ~G~~V~IvTpn~yLA~rd~e~~~~l~~~-----LGlsv~~i~~~~~~~er~~~y~------~dI~ygT~-~elgfDy 185 (830)
T PRK12904 121 TGKGVHVVTVNDYLAKRDAEWMGPLYEF-----LGLSVGVILSGMSPEERREAYA------ADITYGTN-NEFGFDY 185 (830)
T ss_pred cCCCEEEEecCHHHHHHHHHHHHHHHhh-----cCCeEEEEcCCCCHHHHHHhcC------CCeEEECC-cchhhhh
Confidence 3456889999999888888888776543 2889999999999999998874 46999998 5666554
No 294
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=34.99 E-value=7e+02 Score=28.05 Aligned_cols=73 Identities=12% Similarity=0.126 Sum_probs=41.4
Q ss_pred CCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceE
Q 038855 147 GDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKY 226 (260)
Q Consensus 147 g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~ 226 (260)
..++|.+|+..++..+...+++.+.....-..+..+..-.|. ..|..|- +|++..|--+.||-=.++-.
T Consensus 590 ~~~lILa~tn~~v~~LN~~iR~~L~~~G~L~~~~~~~~~~G~----------r~f~vGD-rV~f~rNd~~lgV~NGd~Gt 658 (1102)
T PRK13826 590 KTTLILAHLRRDVRMLNEMARAKLVERGIVGEGHAFRTADGE----------RRFAAGD-QIVFLKNEGSLGVKNGMIGK 658 (1102)
T ss_pred cceEEECCchHHHHHHHHHHHHHhhhccCCCcCceeeeccCC----------ccccCCC-EEEEeeecCccCccCCCeEE
Confidence 468999999999999999999877531100011112111221 1344554 55555555555555455555
Q ss_pred EEeC
Q 038855 227 VIDP 230 (260)
Q Consensus 227 VId~ 230 (260)
|++.
T Consensus 659 V~~i 662 (1102)
T PRK13826 659 VVEA 662 (1102)
T ss_pred EEEe
Confidence 5543
No 295
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=34.83 E-value=21 Score=38.01 Aligned_cols=17 Identities=35% Similarity=0.595 Sum_probs=14.4
Q ss_pred CCCCCcccEEEEecCCc
Q 038855 5 DPYLSRYSVIIVDEAHE 21 (260)
Q Consensus 5 d~~L~~~~~vIlDEahe 21 (260)
++.+..++++|+||||.
T Consensus 431 ~~~~p~~~~lIiDEAH~ 447 (820)
T PRK07246 431 DKDFARNKVLVFDEAQK 447 (820)
T ss_pred ccCCCCCCEEEEECcch
Confidence 45678899999999994
No 296
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=34.40 E-value=50 Score=30.46 Aligned_cols=30 Identities=33% Similarity=0.527 Sum_probs=19.7
Q ss_pred CCCCCcccEEEEecCCcCCcchhHHHHHHHHH
Q 038855 5 DPYLSRYSVIIVDEAHERTVHTDVLLGLLKKV 36 (260)
Q Consensus 5 d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~ 36 (260)
-|...+.++|||||||.. ..+....+++.+
T Consensus 112 ~p~~~~~~vviidea~~l--~~~~~~~Ll~~l 141 (355)
T TIGR02397 112 APSSGKYKVYIIDEVHML--SKSAFNALLKTL 141 (355)
T ss_pred CcccCCceEEEEeChhhc--CHHHHHHHHHHH
Confidence 467788899999999853 223344455544
No 297
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=34.32 E-value=91 Score=22.11 Aligned_cols=41 Identities=7% Similarity=0.033 Sum_probs=30.4
Q ss_pred hhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeE-EEEecCCCCH
Q 038855 142 LDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLV-TVPIFSSLPS 191 (260)
Q Consensus 142 ~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~-~~~lh~~l~~ 191 (260)
.......++|+|.+......++..|... ++. +..+.|++..
T Consensus 52 ~~~~~~~iv~~c~~g~~a~~~~~~l~~~---------G~~~v~~l~GG~~~ 93 (100)
T smart00450 52 GLDKDKPVVVYCRSGNRSAKAAWLLREL---------GFKNVYLLDGGYKE 93 (100)
T ss_pred CCCCCCeEEEEeCCCcHHHHHHHHHHHc---------CCCceEEecCCHHH
Confidence 3344568999999988888888888774 554 7777787754
No 298
>PRK08116 hypothetical protein; Validated
Probab=33.06 E-value=92 Score=28.46 Aligned_cols=32 Identities=16% Similarity=0.227 Sum_probs=20.8
Q ss_pred CCcccEEEEecCCcCCcchhHHHHHHHHHHhhc
Q 038855 8 LSRYSVIIVDEAHERTVHTDVLLGLLKKVQNAR 40 (260)
Q Consensus 8 L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~ 40 (260)
+.++++|||||++-- -.+++....|-.+.+.+
T Consensus 176 l~~~dlLviDDlg~e-~~t~~~~~~l~~iin~r 207 (268)
T PRK08116 176 LVNADLLILDDLGAE-RDTEWAREKVYNIIDSR 207 (268)
T ss_pred hcCCCEEEEecccCC-CCCHHHHHHHHHHHHHH
Confidence 568899999999631 23455555555555554
No 299
>PRK11054 helD DNA helicase IV; Provisional
Probab=33.00 E-value=6e+02 Score=26.72 Aligned_cols=30 Identities=23% Similarity=0.380 Sum_probs=19.5
Q ss_pred CCCCCcccEEEEecCCcCCcchhHHHHHHHHHH
Q 038855 5 DPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQ 37 (260)
Q Consensus 5 d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~ 37 (260)
.+.++++++|+|||+++-+. .-..+++.+.
T Consensus 425 ~~~~~~~~~IlVDE~QD~s~---~q~~ll~~l~ 454 (684)
T PRK11054 425 GRFISPWKHILVDEFQDISP---QRAALLAALR 454 (684)
T ss_pred hhhhhcccEEEEEccccCCH---HHHHHHHHHh
Confidence 34567899999999985332 2344555553
No 300
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=31.98 E-value=35 Score=29.19 Aligned_cols=56 Identities=21% Similarity=0.300 Sum_probs=30.0
Q ss_pred CCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCceEE
Q 038855 8 LSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLKLI 87 (260)
Q Consensus 8 L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qli 87 (260)
+.+++++||||.=-. ..+++....+-.+.+.|.. . +-.
T Consensus 106 l~~~dlLilDDlG~~-~~~~~~~~~l~~ii~~R~~----------------------------------------~-~~t 143 (178)
T PF01695_consen 106 LKRVDLLILDDLGYE-PLSEWEAELLFEIIDERYE----------------------------------------R-KPT 143 (178)
T ss_dssp HHTSSCEEEETCTSS----HHHHHCTHHHHHHHHH----------------------------------------T--EE
T ss_pred cccccEeccccccee-eecccccccchhhhhHhhc----------------------------------------c-cCe
Confidence 457899999999432 2234444445555555541 1 235
Q ss_pred EEeccCCHHHHHhhhCCC
Q 038855 88 IMSASLDARGFSEYFGCA 105 (260)
Q Consensus 88 l~SATl~~~~~~~~~~~~ 105 (260)
+++.-++...+.+++++.
T Consensus 144 IiTSN~~~~~l~~~~~d~ 161 (178)
T PF01695_consen 144 IITSNLSPSELEEVLGDR 161 (178)
T ss_dssp EEEESS-HHHHHT-----
T ss_pred EeeCCCchhhHhhccccc
Confidence 667778999999999864
No 301
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.80 E-value=57 Score=33.72 Aligned_cols=32 Identities=25% Similarity=0.539 Sum_probs=21.6
Q ss_pred CCCCCcccEEEEecCCcCCcchhHHHHHHHHHHh
Q 038855 5 DPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQN 38 (260)
Q Consensus 5 d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~ 38 (260)
-|..++++++||||+|..+. +-.-.+++.+..
T Consensus 116 ~P~~~~~KVvIIdea~~Ls~--~a~naLLK~LEe 147 (614)
T PRK14971 116 PPQIGKYKIYIIDEVHMLSQ--AAFNAFLKTLEE 147 (614)
T ss_pred CcccCCcEEEEEECcccCCH--HHHHHHHHHHhC
Confidence 47788999999999996432 334445554443
No 302
>PRK02362 ski2-like helicase; Provisional
Probab=31.47 E-value=2e+02 Score=30.11 Aligned_cols=71 Identities=13% Similarity=0.047 Sum_probs=47.9
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC-----ccccc-
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN-----IAETS- 218 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd-----iae~g- 218 (260)
..+++|+.+|+++=+.+.++.+++. .. -++.+..++|+.....+ . -+...|+|||+ +...+
T Consensus 66 ~~~kal~i~P~raLa~q~~~~~~~~-~~-----~g~~v~~~tGd~~~~~~--~-----l~~~~IiV~Tpek~~~llr~~~ 132 (737)
T PRK02362 66 RGGKALYIVPLRALASEKFEEFERF-EE-----LGVRVGISTGDYDSRDE--W-----LGDNDIIVATSEKVDSLLRNGA 132 (737)
T ss_pred cCCcEEEEeChHHHHHHHHHHHHHh-hc-----CCCEEEEEeCCcCcccc--c-----cCCCCEEEECHHHHHHHHhcCh
Confidence 4678999999999999999888863 21 26788889998765431 1 13457999995 22222
Q ss_pred CCCCCceEEE
Q 038855 219 VTIPGIKYVI 228 (260)
Q Consensus 219 idIp~V~~VI 228 (260)
.-+.++++||
T Consensus 133 ~~l~~v~lvV 142 (737)
T PRK02362 133 PWLDDITCVV 142 (737)
T ss_pred hhhhhcCEEE
Confidence 1235666665
No 303
>PRK09087 hypothetical protein; Validated
Probab=31.34 E-value=1.1e+02 Score=27.14 Aligned_cols=25 Identities=12% Similarity=0.312 Sum_probs=14.7
Q ss_pred cEEEEecCCcCCcchhHHHHHHHHH
Q 038855 12 SVIIVDEAHERTVHTDVLLGLLKKV 36 (260)
Q Consensus 12 ~~vIlDEaher~~~~d~ll~~lk~~ 36 (260)
..|+||++|......+-++.++..+
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~ 113 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSV 113 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHH
Confidence 5799999986433333344444433
No 304
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.30 E-value=65 Score=32.88 Aligned_cols=32 Identities=41% Similarity=0.644 Sum_probs=20.8
Q ss_pred CCCCCcccEEEEecCCcCCcchhHHHHHHHHHHh
Q 038855 5 DPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQN 38 (260)
Q Consensus 5 d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~ 38 (260)
-|.+.++++|||||+|..+ .+-.-.+++.+..
T Consensus 115 ~p~~~~~kVvIIDEa~~L~--~~a~naLLk~LEe 146 (585)
T PRK14950 115 RPALARYKVYIIDEVHMLS--TAAFNALLKTLEE 146 (585)
T ss_pred CcccCCeEEEEEeChHhCC--HHHHHHHHHHHhc
Confidence 3667889999999998533 3334445555433
No 305
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=31.25 E-value=6.2e+02 Score=26.35 Aligned_cols=48 Identities=10% Similarity=0.087 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCC
Q 038855 133 TLITIFQVHLDE--APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLP 190 (260)
Q Consensus 133 ~~~~l~~i~~~~--~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~ 190 (260)
....+.++.... .++++.|.+.+......++..|.+ .++++... |+..
T Consensus 329 ia~~I~~l~~~~~~~~~diAVL~R~~~~~~~l~~~L~~---------~gIP~~~~-g~~~ 378 (726)
T TIGR01073 329 VAGEIDKLVKNGERKYGDFAILYRTNAQSRVFEETLLK---------ANIPYKIV-GGLK 378 (726)
T ss_pred HHHHHHHHHHcCCCCcCCEEEEEeCchhHHHHHHHHHH---------cCCCEEEe-CCcc
Confidence 334444544432 467999999999999999999988 37776544 4433
No 306
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=31.16 E-value=58 Score=34.55 Aligned_cols=32 Identities=31% Similarity=0.522 Sum_probs=21.4
Q ss_pred CCCCCcccEEEEecCCcCCcchhHHHHHHHHHHh
Q 038855 5 DPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQN 38 (260)
Q Consensus 5 d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~ 38 (260)
-|..++++++||||||..+ ..-.-++|+.+-.
T Consensus 113 ~P~~g~~KV~IIDEa~~LT--~~A~NALLKtLEE 144 (725)
T PRK07133 113 LPTQSKYKIYIIDEVHMLS--KSAFNALLKTLEE 144 (725)
T ss_pred chhcCCCEEEEEEChhhCC--HHHHHHHHHHhhc
Confidence 3667899999999999533 3344455555543
No 307
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.12 E-value=75 Score=32.02 Aligned_cols=32 Identities=31% Similarity=0.418 Sum_probs=21.4
Q ss_pred CCCCCcccEEEEecCCcCCcchhHHHHHHHHHHh
Q 038855 5 DPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQN 38 (260)
Q Consensus 5 d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~ 38 (260)
.|.+.+.++|||||+|.. ..+.+..+++.+..
T Consensus 111 ~p~~~~~kVVIIDEad~l--s~~a~naLLk~LEe 142 (504)
T PRK14963 111 APLRGGRKVYILDEAHMM--SKSAFNALLKTLEE 142 (504)
T ss_pred ccccCCCeEEEEECcccc--CHHHHHHHHHHHHh
Confidence 366788999999999853 23345555555544
No 308
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.03 E-value=57 Score=34.00 Aligned_cols=30 Identities=43% Similarity=0.678 Sum_probs=19.3
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHH
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQ 37 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~ 37 (260)
|...++++|||||+|..+ .+..-.+++.+.
T Consensus 115 p~~g~~kVIIIDEad~Lt--~~a~naLLk~LE 144 (624)
T PRK14959 115 PMEGRYKVFIIDEAHMLT--REAFNALLKTLE 144 (624)
T ss_pred hhcCCceEEEEEChHhCC--HHHHHHHHHHhh
Confidence 455678999999998533 333444555443
No 309
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.41 E-value=64 Score=32.98 Aligned_cols=31 Identities=32% Similarity=0.566 Sum_probs=20.2
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHHh
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQN 38 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~ 38 (260)
|...+++++||||||..+ .+-.-.+|+.+-.
T Consensus 115 p~~g~~kViIIDEa~~ls--~~a~naLLK~LEe 145 (546)
T PRK14957 115 PSQGRYKVYLIDEVHMLS--KQSFNALLKTLEE 145 (546)
T ss_pred hhcCCcEEEEEechhhcc--HHHHHHHHHHHhc
Confidence 456789999999999633 3334455555543
No 310
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=30.39 E-value=2.1e+02 Score=30.80 Aligned_cols=55 Identities=11% Similarity=0.160 Sum_probs=41.6
Q ss_pred CCeEEEEecCCCCHHHHHHHhcccC--CC-CeEEEEecCcccccCCCCCceEEEeCCC
Q 038855 178 RKLVTVPIFSSLPSEQQMKVFAPAA--AG-FRKVILATNIAETSVTIPGIKYVIDPGF 232 (260)
Q Consensus 178 ~~~~~~~lh~~l~~~~r~~v~~~~~--~g-~~kVlvaTdiae~gidIp~V~~VId~g~ 232 (260)
.++.+..+||.....+|+.+...|. +| .+-.|++=-.-.-|+..-+-.|+|=.++
T Consensus 769 ~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDl 826 (901)
T KOG4439|consen 769 GGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDL 826 (901)
T ss_pred CCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEec
Confidence 4889999999999999999999884 34 5555555444566777788888885443
No 311
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=30.36 E-value=1.2e+02 Score=24.86 Aligned_cols=69 Identities=13% Similarity=0.045 Sum_probs=32.6
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCce
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIK 225 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~ 225 (260)
+..++|+|+..+.++.+-+.|... +.-.++|+. -.. ...+....|+|+++... -..+.-+
T Consensus 29 g~rv~V~~~d~~~a~~lD~~LW~~--------~~~sFlPH~-~~~---------~~~~~~~PV~i~~~~~~--~~~~~~~ 88 (137)
T PF04364_consen 29 GQRVLVLCPDEEQAEALDELLWTF--------SPDSFLPHG-LAG---------EPPAARQPVLITWDQEA--NPNNHAD 88 (137)
T ss_dssp T--EEEE-SSHHHHHHHHHHTTTS--------STT----EE-ETT----------SSTT--SEEEE-TTS------S--S
T ss_pred CCeEEEEeCCHHHHHHHHHHHHCC--------CCCCCCCCc-ccC---------CCCCCCCeEEEecCccc--CCCCCCC
Confidence 678999999999999988888763 222344432 111 01122346999987643 1223467
Q ss_pred EEEeCCCcc
Q 038855 226 YVIDPGFVK 234 (260)
Q Consensus 226 ~VId~g~~~ 234 (260)
++||.+-..
T Consensus 89 vLinL~~~~ 97 (137)
T PF04364_consen 89 VLINLSGEV 97 (137)
T ss_dssp EEEE--SS-
T ss_pred EEEECCCCC
Confidence 888876544
No 312
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=30.15 E-value=1e+02 Score=28.03 Aligned_cols=15 Identities=27% Similarity=0.525 Sum_probs=11.9
Q ss_pred CCCcccEEEEecCCc
Q 038855 7 YLSRYSVIIVDEAHE 21 (260)
Q Consensus 7 ~L~~~~~vIlDEahe 21 (260)
.....++|||||+|.
T Consensus 122 ~~~~~~vlilDe~~~ 136 (337)
T PRK12402 122 LSADYKTILLDNAEA 136 (337)
T ss_pred CCCCCcEEEEeCccc
Confidence 345678999999985
No 313
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=30.08 E-value=1.7e+02 Score=31.84 Aligned_cols=59 Identities=15% Similarity=0.128 Sum_probs=40.1
Q ss_pred cCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhccc-CCCCeEEEEec
Q 038855 144 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPA-AAGFRKVILAT 212 (260)
Q Consensus 144 ~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~-~~g~~kVlvaT 212 (260)
..+|+.||.+|-.---.++.+. .+.. +.+.++.+||+. ++|....+.+ .+|...|+|+|
T Consensus 215 ~~~GPfLVi~P~StL~NW~~Ef-~rf~-------P~l~~~~~~Gdk--~eR~~~~r~~~~~~~fdV~iTs 274 (971)
T KOG0385|consen 215 GIPGPFLVIAPKSTLDNWMNEF-KRFT-------PSLNVVVYHGDK--EERAALRRDIMLPGRFDVCITS 274 (971)
T ss_pred CCCCCeEEEeeHhhHHHHHHHH-HHhC-------CCcceEEEeCCH--HHHHHHHHHhhccCCCceEeeh
Confidence 3489999999976543433333 3322 488999999976 6666666555 45677888877
No 314
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=29.98 E-value=49 Score=31.48 Aligned_cols=33 Identities=27% Similarity=0.479 Sum_probs=22.2
Q ss_pred CCCcccEEEEecCCcCCcchhHHHHHHHHHHhhcc
Q 038855 7 YLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARS 41 (260)
Q Consensus 7 ~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~ 41 (260)
.|...++||+||+ -++..+.+..+-+.+...++
T Consensus 99 ~l~~~~~lIiDEi--sm~~~~~l~~i~~~lr~i~~ 131 (364)
T PF05970_consen 99 RLRKADVLIIDEI--SMVSADMLDAIDRRLRDIRK 131 (364)
T ss_pred hhhhheeeecccc--cchhHHHHHHHHHhhhhhhc
Confidence 4678899999999 45666666555454544443
No 315
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=29.96 E-value=77 Score=23.24 Aligned_cols=36 Identities=8% Similarity=0.059 Sum_probs=27.7
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCC
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLP 190 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~ 190 (260)
..+++++|.+-......++.|+.. ++.+..+.|++.
T Consensus 51 ~~~vvl~c~~g~~a~~~a~~L~~~---------G~~v~~l~GG~~ 86 (90)
T cd01524 51 DKEIIVYCAVGLRGYIAARILTQN---------GFKVKNLDGGYK 86 (90)
T ss_pred CCcEEEEcCCChhHHHHHHHHHHC---------CCCEEEecCCHH
Confidence 457899998877778888888763 667888888874
No 316
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.91 E-value=63 Score=32.29 Aligned_cols=17 Identities=41% Similarity=0.735 Sum_probs=14.0
Q ss_pred CCCCCcccEEEEecCCc
Q 038855 5 DPYLSRYSVIIVDEAHE 21 (260)
Q Consensus 5 d~~L~~~~~vIlDEahe 21 (260)
.|...++++|||||+|.
T Consensus 112 ~p~~~~~kVvIIDE~h~ 128 (472)
T PRK14962 112 RPMEGKYKVYIIDEVHM 128 (472)
T ss_pred ChhcCCeEEEEEEChHH
Confidence 35667889999999995
No 317
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=29.79 E-value=20 Score=39.49 Aligned_cols=79 Identities=18% Similarity=0.371 Sum_probs=41.4
Q ss_pred CCceEEEEeccC-CHHHHHhhhCCCcE-------------EEecCceeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCC-
Q 038855 82 PPLKLIIMSASL-DARGFSEYFGCAKA-------------VHVQGRQFPVEILYTLYPEPDFLDATLITIFQVHLDEAP- 146 (260)
Q Consensus 82 ~~~qlil~SATl-~~~~~~~~~~~~~~-------------v~v~~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~- 146 (260)
++.+++.+|--+ +...+++|++-.+- +++.| ||...++......+ ...++..+.++|
T Consensus 1082 ~~vr~~glsta~~na~dla~wl~~~~~~nf~~svrpvp~~~~i~g--fp~~~~cprm~smn------kpa~qaik~~sp~ 1153 (1230)
T KOG0952|consen 1082 EPVRYLGLSTALANANDLADWLNIKDMYNFRPSVRPVPLEVHIDG--FPGQHYCPRMMSMN------KPAFQAIKTHSPI 1153 (1230)
T ss_pred cchhhhhHhhhhhccHHHHHHhCCCCcCCCCcccccCCceEeecC--CCchhcchhhhhcc------cHHHHHHhcCCCC
Confidence 367777776555 77788888764322 22222 34422222221111 223444555554
Q ss_pred CCEEEEeCCHHHHHHHHHHHHH
Q 038855 147 GDILVFLTGQEEIESVERLVQE 168 (260)
Q Consensus 147 g~iLVFl~~~~~ve~v~~~L~~ 168 (260)
.+.|||+.++..-..-+..|-.
T Consensus 1154 ~p~lifv~srrqtrlta~~li~ 1175 (1230)
T KOG0952|consen 1154 KPVLIFVSSRRQTRLTALDLIA 1175 (1230)
T ss_pred CceEEEeecccccccchHhHHh
Confidence 5789999988765544444433
No 318
>PRK06921 hypothetical protein; Provisional
Probab=29.52 E-value=1.1e+02 Score=27.92 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=20.4
Q ss_pred CCcccEEEEecCCc---C-CcchhHHHHHHHHHHhhcc
Q 038855 8 LSRYSVIIVDEAHE---R-TVHTDVLLGLLKKVQNARS 41 (260)
Q Consensus 8 L~~~~~vIlDEahe---r-~~~~d~ll~~lk~~~~~~~ 41 (260)
+.++++|||||+|. . ...+++-...|-.+.+.|.
T Consensus 175 ~~~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~ 212 (266)
T PRK06921 175 MKKVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRY 212 (266)
T ss_pred hcCCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHH
Confidence 45789999999963 1 1123555554555555543
No 319
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=29.44 E-value=29 Score=32.10 Aligned_cols=12 Identities=50% Similarity=0.833 Sum_probs=10.5
Q ss_pred cccEEEEecCCc
Q 038855 10 RYSVIIVDEAHE 21 (260)
Q Consensus 10 ~~~~vIlDEahe 21 (260)
...+||+||||.
T Consensus 236 ~~~~lIiDEAHn 247 (289)
T smart00489 236 KDSIVIFDEAHN 247 (289)
T ss_pred cccEEEEeCccC
Confidence 578999999994
No 320
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=29.44 E-value=29 Score=32.10 Aligned_cols=12 Identities=50% Similarity=0.833 Sum_probs=10.5
Q ss_pred cccEEEEecCCc
Q 038855 10 RYSVIIVDEAHE 21 (260)
Q Consensus 10 ~~~~vIlDEahe 21 (260)
...+||+||||.
T Consensus 236 ~~~~lIiDEAHn 247 (289)
T smart00488 236 KDSIVIFDEAHN 247 (289)
T ss_pred cccEEEEeCccC
Confidence 578999999994
No 321
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=29.42 E-value=2.3e+02 Score=27.64 Aligned_cols=32 Identities=34% Similarity=0.242 Sum_probs=22.0
Q ss_pred CCCeEEEEecCccccc----CCCCCceEEEeCCCcc
Q 038855 203 AGFRKVILATNIAETS----VTIPGIKYVIDPGFVK 234 (260)
Q Consensus 203 ~g~~kVlvaTdiae~g----idIp~V~~VId~g~~~ 234 (260)
.|-.|||.|||-.++- |...-|+-=|-+++|-
T Consensus 322 rgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pD 357 (440)
T KOG0726|consen 322 RGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPD 357 (440)
T ss_pred cCCeEEEEecccccccCHhhcCCCccccccccCCCc
Confidence 4789999999988752 2234566666666664
No 322
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=29.32 E-value=79 Score=32.96 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=17.7
Q ss_pred cCCCCCcccEEEEecCCcCCcch
Q 038855 4 LDPYLSRYSVIIVDEAHERTVHT 26 (260)
Q Consensus 4 ~d~~L~~~~~vIlDEaher~~~~ 26 (260)
.|.|=+.+++||+|++ ||.++.
T Consensus 592 ~DAYkS~lsiivvDdi-ErLiD~ 613 (744)
T KOG0741|consen 592 EDAYKSPLSIIVVDDI-ERLLDY 613 (744)
T ss_pred HHhhcCcceEEEEcch-hhhhcc
Confidence 4677889999999999 676553
No 323
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.63 E-value=79 Score=32.77 Aligned_cols=32 Identities=31% Similarity=0.554 Sum_probs=21.0
Q ss_pred CCCCCcccEEEEecCCcCCcchhHHHHHHHHHHh
Q 038855 5 DPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQN 38 (260)
Q Consensus 5 d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~ 38 (260)
.|...++++|||||+|..+ .+-.-.+||.+-.
T Consensus 116 ~p~~~~~KViIIDEad~Lt--~~a~naLLK~LEe 147 (620)
T PRK14948 116 APVQARWKVYVIDECHMLS--TAAFNALLKTLEE 147 (620)
T ss_pred ChhcCCceEEEEECccccC--HHHHHHHHHHHhc
Confidence 4556789999999999543 3334455555543
No 324
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=28.52 E-value=1.4e+02 Score=25.58 Aligned_cols=32 Identities=13% Similarity=0.162 Sum_probs=18.5
Q ss_pred CcccEEEEecCCcCCcchhHHHHHHHHHHhhcc
Q 038855 9 SRYSVIIVDEAHERTVHTDVLLGLLKKVQNARS 41 (260)
Q Consensus 9 ~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~ 41 (260)
...-++||||++. .+|..-...+.+.+....+
T Consensus 157 ~~~p~~ilDEvd~-~LD~~~~~~l~~~l~~~~~ 188 (220)
T PF02463_consen 157 KPSPFLILDEVDA-ALDEQNRKRLADLLKELSK 188 (220)
T ss_dssp S--SEEEEESTTT-TS-HHHHHHHHHHHHHHTT
T ss_pred ccccccccccccc-ccccccccccccccccccc
Confidence 3567899999973 5565555555555555544
No 325
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=28.52 E-value=2.7e+02 Score=22.25 Aligned_cols=48 Identities=8% Similarity=0.023 Sum_probs=26.4
Q ss_pred EEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHH
Q 038855 119 ILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQ 167 (260)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~ 167 (260)
-.+++......-...+..+...... .++++|+||.+-..+..+..+-+
T Consensus 60 y~~iPv~~~~~~~~~v~~f~~~l~~-~~~Pvl~hC~sG~Ra~~l~~l~~ 107 (110)
T PF04273_consen 60 YVHIPVDGGAITEEDVEAFADALES-LPKPVLAHCRSGTRASALWALAQ 107 (110)
T ss_dssp EEE----TTT--HHHHHHHHHHHHT-TTTSEEEE-SCSHHHHHHHHHHH
T ss_pred EEEeecCCCCCCHHHHHHHHHHHHh-CCCCEEEECCCChhHHHHHHHHh
Confidence 3444444444434444444444443 57899999999998887766544
No 326
>PF04763 DUF562: Protein of unknown function (DUF562); InterPro: IPR006850 This represents a conserved region found in a number of Chlamydophila pneumoniae proteins.
Probab=28.17 E-value=3.8e+02 Score=22.90 Aligned_cols=79 Identities=18% Similarity=0.205 Sum_probs=53.6
Q ss_pred HHhhcCCCCEEEEeC----C-----HHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEE
Q 038855 140 VHLDEAPGDILVFLT----G-----QEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVIL 210 (260)
Q Consensus 140 i~~~~~~g~iLVFl~----~-----~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlv 210 (260)
+..++..+.++|-|+ + -..+..+.+.|+.. .=.-+.++..|+.-+.-+..+++..-..|+.--+|
T Consensus 9 v~~de~Ek~vvVv~~~~~~~~~~l~~~s~~~l~~eL~~~------GYSylNIfs~~~~~~~V~eR~~l~~~~~grsFTvI 82 (146)
T PF04763_consen 9 VLHDEKEKNVVVVCNHSWPGPESLPPESVSLLIEELEES------GYSYLNIFSCSSESMCVKERQILNDDSQGRSFTVI 82 (146)
T ss_pred heeccccCcEEEEEeCCcccccCCChHHHHHHHHHHhhc------CCceEEEEEEcCCCcchHHHHHhcCCccCceEEEE
Confidence 344556677888777 2 34455556666552 11245788888888888888899988889988888
Q ss_pred ecCcccccCCCCCc
Q 038855 211 ATNIAETSVTIPGI 224 (260)
Q Consensus 211 aTdiae~gidIp~V 224 (260)
.|+.-..+-||-.+
T Consensus 83 ~~elp~g~~DiR~L 96 (146)
T PF04763_consen 83 LTELPEGSADIRCL 96 (146)
T ss_pred EEcCCCCccchhhh
Confidence 88766666666443
No 327
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=27.91 E-value=2.2e+02 Score=24.53 Aligned_cols=15 Identities=13% Similarity=0.104 Sum_probs=11.8
Q ss_pred CCcccEEEEecCCcC
Q 038855 8 LSRYSVIIVDEAHER 22 (260)
Q Consensus 8 L~~~~~vIlDEaher 22 (260)
....++|||||+|.-
T Consensus 88 ~~~~~~liiDdi~~l 102 (227)
T PRK08903 88 DPEAELYAVDDVERL 102 (227)
T ss_pred cccCCEEEEeChhhc
Confidence 446789999999853
No 328
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=27.79 E-value=2.3e+02 Score=27.08 Aligned_cols=90 Identities=12% Similarity=0.091 Sum_probs=57.9
Q ss_pred CHHHHHhhhCCCcEEEecCce-eeeeEEEeeC-CCc--chHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHH
Q 038855 94 DARGFSEYFGCAKAVHVQGRQ-FPVEILYTLY-PEP--DFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQER 169 (260)
Q Consensus 94 ~~~~~~~~~~~~~~v~v~~~~-~~v~~~~~~~-~~~--~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~ 169 (260)
++..+.+.+.++.++.+..++ |.+.+-.-.. ..+ .........+.+......+.+|+.||+|-=.||+...+|.+
T Consensus 116 ~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~tFrefP~~v~~~~~~~~~KkVvmyCTGGIRCEKas~~m~~- 194 (308)
T COG1054 116 SPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIETFREFPAWVEENLDLLKDKKVVMYCTGGIRCEKASAWMKE- 194 (308)
T ss_pred CHHHHHHHhcCCCeEEEEcCcceeEeeeeecCccCCChhhhhhhHHHHHHHHHhccCCcEEEEcCCceeehhhHHHHHH-
Confidence 566677777777788887764 4444332222 112 11122233344434444566999999999999999999988
Q ss_pred HhcCccCCCCeE-EEEecCCCCHH
Q 038855 170 LLQLPEASRKLV-TVPIFSSLPSE 192 (260)
Q Consensus 170 l~~~~~~~~~~~-~~~lh~~l~~~ 192 (260)
.+|. |.-|+|++-.-
T Consensus 195 --------~GF~eVyhL~GGIl~Y 210 (308)
T COG1054 195 --------NGFKEVYHLEGGILKY 210 (308)
T ss_pred --------hcchhhhcccchHHHH
Confidence 3775 77799987644
No 329
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=27.60 E-value=7.3e+02 Score=25.95 Aligned_cols=43 Identities=9% Similarity=0.021 Sum_probs=30.3
Q ss_pred HHHHHHHHhh-cCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEe
Q 038855 134 LITIFQVHLD-EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPI 185 (260)
Q Consensus 134 ~~~l~~i~~~-~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~l 185 (260)
...+.++... ..+++|.|.+.+......+++.|.+ .++++...
T Consensus 334 a~~I~~l~~~g~~~~diAVL~R~~~~~~~le~~L~~---------~gIPy~~~ 377 (721)
T PRK11773 334 VERIKTWQDNGGALSDCAILYRSNAQSRVLEEALLQ---------AGIPYRIY 377 (721)
T ss_pred HHHHHHHHHcCCCcccEEEEEecchhHHHHHHHHHH---------CCCCEEEE
Confidence 3344444432 3467899999999999999998888 37776554
No 330
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=27.50 E-value=44 Score=31.77 Aligned_cols=32 Identities=25% Similarity=0.294 Sum_probs=21.5
Q ss_pred cccEEEEecCCc----CCcchhHHHHHHHHHHhhcc
Q 038855 10 RYSVIIVDEAHE----RTVHTDVLLGLLKKVQNARS 41 (260)
Q Consensus 10 ~~~~vIlDEahe----r~~~~d~ll~~lk~~~~~~~ 41 (260)
+++++|+||+|- .....--.+..||.+.+.-+
T Consensus 145 ~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ 180 (302)
T PF05621_consen 145 GVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQ 180 (302)
T ss_pred CCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccC
Confidence 578999999994 12223446777888876543
No 331
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=27.44 E-value=1e+02 Score=30.02 Aligned_cols=30 Identities=27% Similarity=0.486 Sum_probs=19.8
Q ss_pred CCCCCcccEEEEecCCcCCcchhHHHHHHHHH
Q 038855 5 DPYLSRYSVIIVDEAHERTVHTDVLLGLLKKV 36 (260)
Q Consensus 5 d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~ 36 (260)
.|...+++++||||+|..+.. ..-.+||.+
T Consensus 112 ~p~~~~~kViiIDead~m~~~--aanaLLk~L 141 (394)
T PRK07940 112 RPSTGRWRIVVIEDADRLTER--AANALLKAV 141 (394)
T ss_pred CcccCCcEEEEEechhhcCHH--HHHHHHHHh
Confidence 456678999999999864333 234455544
No 332
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=27.21 E-value=3.5e+02 Score=23.29 Aligned_cols=63 Identities=17% Similarity=0.178 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCC
Q 038855 133 TLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAA 203 (260)
Q Consensus 133 ~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~ 203 (260)
....+++....+ .-++-++-.+.+.++.+++.|++.. .++.++..||-...++...+.+...+
T Consensus 36 l~~~l~~~~~~~-~~~vfllG~~~~v~~~~~~~l~~~y-------P~l~i~g~~g~f~~~~~~~i~~~I~~ 98 (177)
T TIGR00696 36 LMEELCQRAGKE-KLPIFLYGGKPDVLQQLKVKLIKEY-------PKLKIVGAFGPLEPEERKAALAKIAR 98 (177)
T ss_pred HHHHHHHHHHHc-CCeEEEECCCHHHHHHHHHHHHHHC-------CCCEEEEECCCCChHHHHHHHHHHHH
Confidence 333444444332 2355555556666678888888764 36676667888887766666555543
No 333
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=27.11 E-value=1.7e+02 Score=30.36 Aligned_cols=77 Identities=10% Similarity=-0.072 Sum_probs=46.8
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCc-cCC-------------CCeEEEEecCC----CCHHHHHHHhcccCCCCeE
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLP-EAS-------------RKLVTVPIFSS----LPSEQQMKVFAPAAAGFRK 207 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~-~~~-------------~~~~~~~lh~~----l~~~~r~~v~~~~~~g~~k 207 (260)
+.++||-+|+...++.+++.|...++... ..- ....+.+.... -....|.+++.....+...
T Consensus 57 ~r~vLIVt~~~~~A~~l~~dL~~~~~~~~v~~f~s~~~~~~~~~~~P~~d~~~~~~~~~~~~~~~~R~~~l~~L~~~~~~ 136 (652)
T PRK05298 57 QRPTLVLAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINEEIERLRHSATKSLLERRDV 136 (652)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHhcCCCeEEEeCChhhccCccccCCCCcccccccCCCChHHHHHHHHHHHHHHhCCCE
Confidence 46899999999999999999988764210 000 00011122111 1133588888888766666
Q ss_pred EEEecCcccccCCCC
Q 038855 208 VILATNIAETSVTIP 222 (260)
Q Consensus 208 VlvaTdiae~gidIp 222 (260)
|+|||--|-.++-.|
T Consensus 137 ivv~s~~al~~~~~~ 151 (652)
T PRK05298 137 IVVASVSCIYGLGSP 151 (652)
T ss_pred EEEEcHHHhcCCCCH
Confidence 777776555555444
No 334
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=26.83 E-value=94 Score=29.78 Aligned_cols=14 Identities=7% Similarity=0.320 Sum_probs=11.2
Q ss_pred CCcccEEEEecCCc
Q 038855 8 LSRYSVIIVDEAHE 21 (260)
Q Consensus 8 L~~~~~vIlDEahe 21 (260)
+.++++|||||+|.
T Consensus 197 ~~~~dlLiiDDi~~ 210 (405)
T TIGR00362 197 YRSVDLLLIDDIQF 210 (405)
T ss_pred HHhCCEEEEehhhh
Confidence 34578999999984
No 335
>PRK06835 DNA replication protein DnaC; Validated
Probab=26.81 E-value=1.3e+02 Score=28.69 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=20.7
Q ss_pred CCcccEEEEecCCcCCcchhHHHHHHHHHHhhcc
Q 038855 8 LSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARS 41 (260)
Q Consensus 8 L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~ 41 (260)
+.+++++|||+.+-- ..+++....|-.+.+.|.
T Consensus 244 l~~~DLLIIDDlG~e-~~t~~~~~~Lf~iin~R~ 276 (329)
T PRK06835 244 LINCDLLIIDDLGTE-KITEFSKSELFNLINKRL 276 (329)
T ss_pred hccCCEEEEeccCCC-CCCHHHHHHHHHHHHHHH
Confidence 468899999999742 334454455555555443
No 336
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=26.71 E-value=4e+02 Score=22.70 Aligned_cols=89 Identities=18% Similarity=0.078 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEe
Q 038855 132 ATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILA 211 (260)
Q Consensus 132 ~~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlva 211 (260)
+.+..+-+........++||.=.|.---..+++.|.+ .+..+...+... ++..+.+... --|+.|
T Consensus 30 a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~---------~g~~V~v~~r~~--~~l~~~l~~a----DiVIsa 94 (168)
T cd01080 30 GILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLN---------RNATVTVCHSKT--KNLKEHTKQA----DIVIVA 94 (168)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhh---------CCCEEEEEECCc--hhHHHHHhhC----CEEEEc
Confidence 3444333343344456777776654434447777776 255555555433 3344444333 256667
Q ss_pred cCcccccCCC---CCceEEEeCCCccce
Q 038855 212 TNIAETSVTI---PGIKYVIDPGFVKAR 236 (260)
Q Consensus 212 Tdiae~gidI---p~V~~VId~g~~~~~ 236 (260)
|.-.. =++- ..-.+|||.+.|+..
T Consensus 95 t~~~~-ii~~~~~~~~~viIDla~prdv 121 (168)
T cd01080 95 VGKPG-LVKGDMVKPGAVVIDVGINRVP 121 (168)
T ss_pred CCCCc-eecHHHccCCeEEEEccCCCcc
Confidence 76544 3443 334699999999864
No 337
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=26.61 E-value=35 Score=36.84 Aligned_cols=17 Identities=53% Similarity=0.954 Sum_probs=14.4
Q ss_pred CCCCCcccEEEEecCCc
Q 038855 5 DPYLSRYSVIIVDEAHE 21 (260)
Q Consensus 5 d~~L~~~~~vIlDEahe 21 (260)
.+.|..++++|+||||.
T Consensus 450 ~~ilp~~~~lViDEAH~ 466 (928)
T PRK08074 450 EPLLPSYEHIIIDEAHH 466 (928)
T ss_pred cccCCCCCeEEEECCch
Confidence 35678899999999994
No 338
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=26.51 E-value=65 Score=34.17 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=15.8
Q ss_pred cccEEEEecCCcCCcchhHHHHHH
Q 038855 10 RYSVIIVDEAHERTVHTDVLLGLL 33 (260)
Q Consensus 10 ~~~~vIlDEaher~~~~d~ll~~l 33 (260)
.++.+|+|||+. +..+.+..++
T Consensus 352 tfDLLIVDEAqF--Ik~~al~~il 373 (738)
T PHA03368 352 DFNLLFVDEANF--IRPDAVQTIM 373 (738)
T ss_pred cccEEEEechhh--CCHHHHHHHH
Confidence 689999999986 3345555555
No 339
>PRK12377 putative replication protein; Provisional
Probab=26.39 E-value=1.5e+02 Score=26.93 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=20.7
Q ss_pred CCcccEEEEecCCcCCcchhHHHHHHHHHHhhcc
Q 038855 8 LSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARS 41 (260)
Q Consensus 8 L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~ 41 (260)
+.++++|||||++-. ..+.+-...|-.+.+.|.
T Consensus 161 l~~~dLLiIDDlg~~-~~s~~~~~~l~~ii~~R~ 193 (248)
T PRK12377 161 LCKVDLLVLDEIGIQ-RETKNEQVVLNQIIDRRT 193 (248)
T ss_pred hcCCCEEEEcCCCCC-CCCHHHHHHHHHHHHHHH
Confidence 578999999999632 223444555555555554
No 340
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=26.29 E-value=75 Score=32.50 Aligned_cols=30 Identities=40% Similarity=0.596 Sum_probs=20.1
Q ss_pred CCCCCcccEEEEecCCcCCcchhHHHHHHHHH
Q 038855 5 DPYLSRYSVIIVDEAHERTVHTDVLLGLLKKV 36 (260)
Q Consensus 5 d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~ 36 (260)
-|...+++++||||+|..+ ....-.+|+.+
T Consensus 114 ~p~~~~~KVvIIDEa~~Ls--~~a~naLLK~L 143 (563)
T PRK06647 114 PPASSRYRVYIIDEVHMLS--NSAFNALLKTI 143 (563)
T ss_pred chhcCCCEEEEEEChhhcC--HHHHHHHHHhh
Confidence 4667899999999999533 23334455544
No 341
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=26.23 E-value=41 Score=35.82 Aligned_cols=16 Identities=31% Similarity=0.640 Sum_probs=13.4
Q ss_pred CCCCcccEEEEecCCc
Q 038855 6 PYLSRYSVIIVDEAHE 21 (260)
Q Consensus 6 ~~L~~~~~vIlDEahe 21 (260)
+.|..+.++|+||||.
T Consensus 436 ~ilp~~~~lIiDEAH~ 451 (850)
T TIGR01407 436 ELFPSFRDLIIDEAHH 451 (850)
T ss_pred ccCCCCCEEEEECcch
Confidence 4577889999999993
No 342
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=26.03 E-value=96 Score=23.10 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=28.7
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCC
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLP 190 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~ 190 (260)
..+++|+|.+-.....++..|+.. ++.+..+.|++.
T Consensus 61 ~~~ivv~C~~G~rs~~aa~~L~~~---------G~~~~~l~GG~~ 96 (100)
T cd01523 61 DQEVTVICAKEGSSQFVAELLAER---------GYDVDYLAGGMK 96 (100)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHc---------CceeEEeCCcHH
Confidence 457999999877888888888873 788777888874
No 343
>PRK01172 ski2-like helicase; Provisional
Probab=25.93 E-value=3.4e+02 Score=27.93 Aligned_cols=70 Identities=4% Similarity=-0.023 Sum_probs=45.6
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC-----ccccc-C
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN-----IAETS-V 219 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd-----iae~g-i 219 (260)
.+++|+.+|+++-+.+.++.+++.. . .+..+....|+.....+. + ....|+|+|+ +..+. .
T Consensus 65 ~~k~v~i~P~raLa~q~~~~~~~l~-~-----~g~~v~~~~G~~~~~~~~--~-----~~~dIiv~Tpek~~~l~~~~~~ 131 (674)
T PRK01172 65 GLKSIYIVPLRSLAMEKYEELSRLR-S-----LGMRVKISIGDYDDPPDF--I-----KRYDVVILTSEKADSLIHHDPY 131 (674)
T ss_pred CCcEEEEechHHHHHHHHHHHHHHh-h-----cCCeEEEEeCCCCCChhh--h-----ccCCEEEECHHHHHHHHhCChh
Confidence 5789999999999999888887632 1 266777788877643221 1 2347999997 22222 2
Q ss_pred CCCCceEEE
Q 038855 220 TIPGIKYVI 228 (260)
Q Consensus 220 dIp~V~~VI 228 (260)
.+.++++||
T Consensus 132 ~l~~v~lvV 140 (674)
T PRK01172 132 IINDVGLIV 140 (674)
T ss_pred HHhhcCEEE
Confidence 245666665
No 344
>PHA02558 uvsW UvsW helicase; Provisional
Probab=25.77 E-value=2.4e+02 Score=28.00 Aligned_cols=27 Identities=7% Similarity=0.123 Sum_probs=22.5
Q ss_pred cCCCCEEEEeCCHHHHHHHHHHHHHHH
Q 038855 144 EAPGDILVFLTGQEEIESVERLVQERL 170 (260)
Q Consensus 144 ~~~g~iLVFl~~~~~ve~v~~~L~~~l 170 (260)
...+++||.+||++-+++..+.+++..
T Consensus 156 ~~~~~vLilvpt~eL~~Q~~~~l~~~~ 182 (501)
T PHA02558 156 NYEGKVLIIVPTTSLVTQMIDDFVDYR 182 (501)
T ss_pred cCCCeEEEEECcHHHHHHHHHHHHHhc
Confidence 334589999999999999999888753
No 345
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=25.74 E-value=1.1e+02 Score=29.90 Aligned_cols=14 Identities=14% Similarity=0.358 Sum_probs=11.5
Q ss_pred CCcccEEEEecCCc
Q 038855 8 LSRYSVIIVDEAHE 21 (260)
Q Consensus 8 L~~~~~vIlDEahe 21 (260)
+.++++|||||+|.
T Consensus 209 ~~~~dlLiiDDi~~ 222 (450)
T PRK00149 209 YRSVDVLLIDDIQF 222 (450)
T ss_pred HhcCCEEEEehhhh
Confidence 34678999999984
No 346
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=25.71 E-value=1.7e+02 Score=27.20 Aligned_cols=49 Identities=20% Similarity=0.316 Sum_probs=34.9
Q ss_pred eeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHH
Q 038855 116 PVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQER 169 (260)
Q Consensus 116 ~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~ 169 (260)
++...++..+.|.. .+..+....+ +.|.+.+|+|+.+++++..+.|++.
T Consensus 163 ~vDav~LDmp~PW~---~le~~~~~Lk--pgg~~~~y~P~veQv~kt~~~l~~~ 211 (256)
T COG2519 163 DVDAVFLDLPDPWN---VLEHVSDALK--PGGVVVVYSPTVEQVEKTVEALRER 211 (256)
T ss_pred ccCEEEEcCCChHH---HHHHHHHHhC--CCcEEEEEcCCHHHHHHHHHHHHhc
Confidence 56677777777653 2333333332 3578999999999999999999984
No 347
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=25.62 E-value=1.7e+02 Score=30.53 Aligned_cols=73 Identities=7% Similarity=-0.058 Sum_probs=48.6
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEE-------------------Ee----cCCCCHHHHHHHhcccC
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTV-------------------PI----FSSLPSEQQMKVFAPAA 202 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~-------------------~l----h~~l~~~~r~~v~~~~~ 202 (260)
..++||.+++...+..++..|+..++.. .+... +. .+.--...|..++....
T Consensus 54 ~~p~Lvi~~n~~~A~ql~~el~~f~p~~-----~V~~f~sy~d~y~pe~y~P~~d~~~~k~~~~~~~i~~~R~~al~~L~ 128 (655)
T TIGR00631 54 NRPTLVIAHNKTLAAQLYNEFKEFFPEN-----AVEYFVSYYDYYQPEAYVPSKDTYIEKDASINDEIERLRHSATRSLL 128 (655)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHhCCCC-----eEEEEeeecccCCccccCCCccccccccCCCChHHHHHHHHHHHHHH
Confidence 4689999999999999999999976421 11111 11 11222335788887777
Q ss_pred CCCeEEEEecCcccccCCCCC
Q 038855 203 AGFRKVILATNIAETSVTIPG 223 (260)
Q Consensus 203 ~g~~kVlvaTdiae~gidIp~ 223 (260)
.+...|+|||--|-.|+-.|.
T Consensus 129 ~~~~~ivVasv~~i~~l~~p~ 149 (655)
T TIGR00631 129 ERRDVIVVASVSCIYGLGSPE 149 (655)
T ss_pred hCCCeEEEEcHHHhcCCCCHH
Confidence 666678888876666666553
No 348
>PRK08939 primosomal protein DnaI; Reviewed
Probab=25.02 E-value=2e+02 Score=26.93 Aligned_cols=54 Identities=9% Similarity=0.173 Sum_probs=35.9
Q ss_pred CCcccEEEEecCCcCCcchhHHH-HHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCceE
Q 038855 8 LSRYSVIIVDEAHERTVHTDVLL-GLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLKL 86 (260)
Q Consensus 8 L~~~~~vIlDEaher~~~~d~ll-~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql 86 (260)
+.+++++||||+.-..+ +++.. .+|..+...|-. ..+-
T Consensus 215 l~~~dlLiIDDiG~e~~-s~~~~~~ll~~Il~~R~~----------------------------------------~~~~ 253 (306)
T PRK08939 215 VKEAPVLMLDDIGAEQM-SSWVRDEVLGVILQYRMQ----------------------------------------EELP 253 (306)
T ss_pred hcCCCEEEEecCCCccc-cHHHHHHHHHHHHHHHHH----------------------------------------CCCe
Confidence 57899999999974332 34443 455655554420 2345
Q ss_pred EEEeccCCHHHHHhhh
Q 038855 87 IIMSASLDARGFSEYF 102 (260)
Q Consensus 87 il~SATl~~~~~~~~~ 102 (260)
.++|.-++.+.+.+.|
T Consensus 254 ti~TSNl~~~el~~~~ 269 (306)
T PRK08939 254 TFFTSNFDFDELEHHL 269 (306)
T ss_pred EEEECCCCHHHHHHHH
Confidence 8888888888888877
No 349
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=24.89 E-value=1.3e+02 Score=30.43 Aligned_cols=73 Identities=11% Similarity=0.226 Sum_probs=51.5
Q ss_pred CCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC-----ccccc-CC
Q 038855 147 GDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN-----IAETS-VT 220 (260)
Q Consensus 147 g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd-----iae~g-id 220 (260)
+.+||..||++-++.+++..++.... ..+..+..+|+.+-..+.+- -.....|++||+ +.++| |.
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~-----s~~~~~~~ygg~~~~~q~~~----~~~gcdIlvaTpGrL~d~~e~g~i~ 223 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYL-----SGMKSVVVYGGTDLGAQLRF----IKRGCDILVATPGRLKDLIERGKIS 223 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhccc-----ccceeeeeeCCcchhhhhhh----hccCccEEEecCchhhhhhhcceee
Confidence 57899999999999999998887433 47788888888554443322 234568999995 55554 45
Q ss_pred CCCceEEE
Q 038855 221 IPGIKYVI 228 (260)
Q Consensus 221 Ip~V~~VI 228 (260)
.++++++|
T Consensus 224 l~~~k~~v 231 (482)
T KOG0335|consen 224 LDNCKFLV 231 (482)
T ss_pred hhhCcEEE
Confidence 56666554
No 350
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.79 E-value=88 Score=32.49 Aligned_cols=19 Identities=42% Similarity=0.669 Sum_probs=15.7
Q ss_pred CCCCCcccEEEEecCCcCC
Q 038855 5 DPYLSRYSVIIVDEAHERT 23 (260)
Q Consensus 5 d~~L~~~~~vIlDEaher~ 23 (260)
.|...++++|||||+|..+
T Consensus 122 ~P~~~~~KVvIIdEad~Lt 140 (620)
T PRK14954 122 GPQKGRYRVYIIDEVHMLS 140 (620)
T ss_pred hhhcCCCEEEEEeChhhcC
Confidence 3677899999999999644
No 351
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=24.53 E-value=68 Score=28.00 Aligned_cols=23 Identities=39% Similarity=0.548 Sum_probs=13.3
Q ss_pred cccEEEEecCCcCCcchhHHHHHHHHHHh
Q 038855 10 RYSVIIVDEAHERTVHTDVLLGLLKKVQN 38 (260)
Q Consensus 10 ~~~~vIlDEaher~~~~d~ll~~lk~~~~ 38 (260)
..+++|||||= -+=+.+|+++..
T Consensus 90 ~~DlliVDEAA------aIp~p~L~~ll~ 112 (177)
T PF05127_consen 90 QADLLIVDEAA------AIPLPLLKQLLR 112 (177)
T ss_dssp --SCEEECTGG------GS-HHHHHHHHC
T ss_pred CCCEEEEechh------cCCHHHHHHHHh
Confidence 45899999993 222445555543
No 352
>PRK14974 cell division protein FtsY; Provisional
Probab=24.31 E-value=2.1e+02 Score=27.38 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=18.3
Q ss_pred CcccEEEEecCCcCCcchhHHHHHHHHHHh
Q 038855 9 SRYSVIIVDEAHERTVHTDVLLGLLKKVQN 38 (260)
Q Consensus 9 ~~~~~vIlDEaher~~~~d~ll~~lk~~~~ 38 (260)
.++++||+|.+. |.....-++.-|+++..
T Consensus 221 ~~~DvVLIDTaG-r~~~~~~lm~eL~~i~~ 249 (336)
T PRK14974 221 RGIDVVLIDTAG-RMHTDANLMDELKKIVR 249 (336)
T ss_pred CCCCEEEEECCC-ccCCcHHHHHHHHHHHH
Confidence 467899999997 44323334555566654
No 353
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=23.63 E-value=1.2e+02 Score=27.12 Aligned_cols=10 Identities=60% Similarity=0.846 Sum_probs=8.0
Q ss_pred cEEEEecCCc
Q 038855 12 SVIIVDEAHE 21 (260)
Q Consensus 12 ~~vIlDEahe 21 (260)
++||+|||..
T Consensus 121 ~~iIvDEaQN 130 (205)
T PF02562_consen 121 AFIIVDEAQN 130 (205)
T ss_dssp EEEEE-SGGG
T ss_pred eEEEEecccC
Confidence 8999999974
No 354
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=23.14 E-value=2.4e+02 Score=24.50 Aligned_cols=31 Identities=32% Similarity=0.492 Sum_probs=19.5
Q ss_pred CcccEEEEecCCcCCcchhHHHHHHHHHHhhc
Q 038855 9 SRYSVIIVDEAHERTVHTDVLLGLLKKVQNAR 40 (260)
Q Consensus 9 ~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~ 40 (260)
+++++|++|-+- |.....-++.-++.+....
T Consensus 82 ~~~D~vlIDT~G-r~~~d~~~~~el~~~~~~~ 112 (196)
T PF00448_consen 82 KGYDLVLIDTAG-RSPRDEELLEELKKLLEAL 112 (196)
T ss_dssp TTSSEEEEEE-S-SSSTHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEecCC-cchhhHHHHHHHHHHhhhc
Confidence 358899999995 5555555555566655543
No 355
>PF12846 AAA_10: AAA-like domain
Probab=22.94 E-value=1e+02 Score=26.92 Aligned_cols=13 Identities=46% Similarity=0.846 Sum_probs=10.3
Q ss_pred CcccEEEEecCCc
Q 038855 9 SRYSVIIVDEAHE 21 (260)
Q Consensus 9 ~~~~~vIlDEahe 21 (260)
..-.++++||||.
T Consensus 219 ~~~~~i~iDEa~~ 231 (304)
T PF12846_consen 219 GRPKIIVIDEAHN 231 (304)
T ss_pred CceEEEEeCCccc
Confidence 4567889999995
No 356
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=22.90 E-value=98 Score=32.59 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=18.3
Q ss_pred CcccEEEEecCCcCCcchhHHHHHHHH
Q 038855 9 SRYSVIIVDEAHERTVHTDVLLGLLKK 35 (260)
Q Consensus 9 ~~~~~vIlDEaher~~~~d~ll~~lk~ 35 (260)
...++||||||+ +++...+..+++.
T Consensus 415 ~~~~llIvDEaS--Mvd~~~~~~Ll~~ 439 (720)
T TIGR01448 415 IDCDLLIVDESS--MMDTWLALSLLAA 439 (720)
T ss_pred ccCCEEEEeccc--cCCHHHHHHHHHh
Confidence 467899999996 5777666666553
No 357
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=22.87 E-value=51 Score=34.44 Aligned_cols=16 Identities=25% Similarity=0.409 Sum_probs=12.3
Q ss_pred CCCC--cccEEEEecCCc
Q 038855 6 PYLS--RYSVIIVDEAHE 21 (260)
Q Consensus 6 ~~L~--~~~~vIlDEahe 21 (260)
+.|. +++++|+||||.
T Consensus 240 ~iLp~~~~~~lViDEAH~ 257 (697)
T PRK11747 240 VVLPDPENLLYVLDEGHH 257 (697)
T ss_pred cccCCCCCCEEEEECccc
Confidence 3454 488899999994
No 358
>PRK04132 replication factor C small subunit; Provisional
Probab=22.87 E-value=1.5e+02 Score=32.13 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=12.2
Q ss_pred cccEEEEecCCcCCc
Q 038855 10 RYSVIIVDEAHERTV 24 (260)
Q Consensus 10 ~~~~vIlDEaher~~ 24 (260)
+++++||||||..+.
T Consensus 630 ~~KVvIIDEaD~Lt~ 644 (846)
T PRK04132 630 SFKIIFLDEADALTQ 644 (846)
T ss_pred CCEEEEEECcccCCH
Confidence 589999999996543
No 359
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=22.81 E-value=1e+02 Score=28.97 Aligned_cols=32 Identities=25% Similarity=0.235 Sum_probs=21.2
Q ss_pred CCCCCcccEEEEecCCcCCcchhHHHHHHHHHHh
Q 038855 5 DPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQN 38 (260)
Q Consensus 5 d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~ 38 (260)
.|...+++++|+||||..+. .-.-.+||.+-.
T Consensus 105 ~~~~~~~kvviI~~a~~~~~--~a~NaLLK~LEE 136 (329)
T PRK08058 105 SGVESNKKVYIIEHADKMTA--SAANSLLKFLEE 136 (329)
T ss_pred CCcccCceEEEeehHhhhCH--HHHHHHHHHhcC
Confidence 35678899999999986433 233455555543
No 360
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=22.74 E-value=4.9e+02 Score=27.97 Aligned_cols=57 Identities=11% Similarity=0.071 Sum_probs=40.8
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCC-----CCHHHHHHHhcccCCCCeEEEEecC
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSS-----LPSEQQMKVFAPAAAGFRKVILATN 213 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~-----l~~~~r~~v~~~~~~g~~kVlvaTd 213 (260)
+..++|.+|+.+=+...++.+......+ ++.+..++++ +..++|..+.. ..|+++||
T Consensus 111 g~~V~VVTpn~yLA~Rdae~m~~l~~~L-----GLsv~~~~~~s~~~~~~~~~rr~~y~------~dIvygTp 172 (762)
T TIGR03714 111 GKGAMLVTTNDYLAKRDAEEMGPVYEWL-----GLTVSLGVVDDPDEEYDANEKRKIYN------SDIVYTTN 172 (762)
T ss_pred CCceEEeCCCHHHHHHHHHHHHHHHhhc-----CCcEEEEECCCCccccCHHHHHHhCC------CCEEEECc
Confidence 4569999999999998888887765432 6666665553 66666665542 46899988
No 361
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.49 E-value=99 Score=29.03 Aligned_cols=17 Identities=35% Similarity=0.722 Sum_probs=14.2
Q ss_pred CCCCCcccEEEEecCCc
Q 038855 5 DPYLSRYSVIIVDEAHE 21 (260)
Q Consensus 5 d~~L~~~~~vIlDEahe 21 (260)
-|.+.+.++||+||+|.
T Consensus 103 ~p~~~~~kiviIDE~~~ 119 (367)
T PRK14970 103 PPQTGKYKIYIIDEVHM 119 (367)
T ss_pred ccccCCcEEEEEeChhh
Confidence 36678889999999985
No 362
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=22.48 E-value=1.9e+02 Score=28.17 Aligned_cols=30 Identities=7% Similarity=0.180 Sum_probs=20.6
Q ss_pred CCcccEEEEecCCcCCcchhHHHHHHHHHHh
Q 038855 8 LSRYSVIIVDEAHERTVHTDVLLGLLKKVQN 38 (260)
Q Consensus 8 L~~~~~vIlDEaher~~~~d~ll~~lk~~~~ 38 (260)
+.+.++|+||++= |....+.+...++.+..
T Consensus 213 l~~~DlVLIDTaG-~~~~d~~l~e~La~L~~ 242 (374)
T PRK14722 213 LRNKHMVLIDTIG-MSQRDRTVSDQIAMLHG 242 (374)
T ss_pred hcCCCEEEEcCCC-CCcccHHHHHHHHHHhc
Confidence 5678999999994 45444556666666543
No 363
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=22.44 E-value=1.3e+02 Score=27.54 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=35.9
Q ss_pred eeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHH
Q 038855 117 VEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQE 168 (260)
Q Consensus 117 v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~ 168 (260)
+.-.+++.|.|.. .+..+...+ ....|.+.+|+|+.+++..+.+.|++
T Consensus 114 ~DavfLDlp~Pw~---~i~~~~~~L-~~~gG~i~~fsP~ieQv~~~~~~L~~ 161 (247)
T PF08704_consen 114 FDAVFLDLPDPWE---AIPHAKRAL-KKPGGRICCFSPCIEQVQKTVEALRE 161 (247)
T ss_dssp EEEEEEESSSGGG---GHHHHHHHE--EEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred ccEEEEeCCCHHH---HHHHHHHHH-hcCCceEEEECCCHHHHHHHHHHHHH
Confidence 5677888888873 333333444 33578899999999999999999998
No 364
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=22.27 E-value=90 Score=28.01 Aligned_cols=19 Identities=42% Similarity=0.639 Sum_probs=14.6
Q ss_pred CCCCcccEEEEecCCcCCc
Q 038855 6 PYLSRYSVIIVDEAHERTV 24 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~ 24 (260)
+....+++|||||||..+.
T Consensus 105 ~~~~~~kviiidead~mt~ 123 (325)
T COG0470 105 PLEGGYKVVIIDEADKLTE 123 (325)
T ss_pred CCCCCceEEEeCcHHHHhH
Confidence 4457899999999985443
No 365
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=22.16 E-value=4.8e+02 Score=21.98 Aligned_cols=69 Identities=10% Similarity=0.147 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEE-ecCCCCHHHHHHHhcccCCCCeEEE
Q 038855 133 TLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVP-IFSSLPSEQQMKVFAPAAAGFRKVI 209 (260)
Q Consensus 133 ~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~-lh~~l~~~~r~~v~~~~~~g~~kVl 209 (260)
....+++..... +.++-++-.+.+.++.+++.|++.. .++.++. .||-...++...+.+........+|
T Consensus 34 l~~~ll~~~~~~-~~~v~llG~~~~~~~~~~~~l~~~y-------p~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv 103 (171)
T cd06533 34 LMPALLELAAQK-GLRVFLLGAKPEVLEKAAERLRARY-------PGLKIVGYHHGYFGPEEEEEIIERINASGADIL 103 (171)
T ss_pred HHHHHHHHHHHc-CCeEEEECCCHHHHHHHHHHHHHHC-------CCcEEEEecCCCCChhhHHHHHHHHHHcCCCEE
Confidence 344444444432 4567777777777888888888864 3677776 6777777766656555554444433
No 366
>PLN03025 replication factor C subunit; Provisional
Probab=22.05 E-value=1.1e+02 Score=28.21 Aligned_cols=15 Identities=40% Similarity=0.603 Sum_probs=12.1
Q ss_pred CcccEEEEecCCcCC
Q 038855 9 SRYSVIIVDEAHERT 23 (260)
Q Consensus 9 ~~~~~vIlDEaher~ 23 (260)
.++++|||||+|..+
T Consensus 98 ~~~kviiiDE~d~lt 112 (319)
T PLN03025 98 GRHKIVILDEADSMT 112 (319)
T ss_pred CCeEEEEEechhhcC
Confidence 368999999999644
No 367
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=21.75 E-value=1.7e+02 Score=32.16 Aligned_cols=60 Identities=12% Similarity=0.128 Sum_probs=45.6
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCC--CeEEEEecCc
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAG--FRKVILATNI 214 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g--~~kVlvaTdi 214 (260)
+|-+||.-|=..=++.....|.. .++....|||.++..+|+.+++.+..| .++|+.-|+-
T Consensus 304 ~gitvVISPL~SLm~DQv~~L~~---------~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE 365 (941)
T KOG0351|consen 304 GGVTVVISPLISLMQDQVTHLSK---------KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPE 365 (941)
T ss_pred CCceEEeccHHHHHHHHHHhhhh---------cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHH
Confidence 34456666655555544444422 489999999999999999999999999 8999988773
No 368
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=21.74 E-value=9.2e+02 Score=25.09 Aligned_cols=44 Identities=9% Similarity=0.035 Sum_probs=30.0
Q ss_pred HHHHHHHHHhh-cCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEe
Q 038855 133 TLITIFQVHLD-EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPI 185 (260)
Q Consensus 133 ~~~~l~~i~~~-~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~l 185 (260)
....+..+... ..+++|.|.+.+......++..|.+ .++++...
T Consensus 328 ia~~I~~l~~~g~~~~diAVL~R~~~~~~~le~~L~~---------~gIPy~~~ 372 (715)
T TIGR01075 328 VVSRIKTWQRNGGALDECAVLYRSNAQSRVLEEALLQ---------ASIPYRIY 372 (715)
T ss_pred HHHHHHHHHHcCCCccCEEEEEecCchHHHHHHHHHH---------cCCCEEEe
Confidence 33344443332 2467899999999999999998887 36666544
No 369
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=21.70 E-value=1.5e+02 Score=23.14 Aligned_cols=38 Identities=18% Similarity=0.208 Sum_probs=30.0
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCe--EEEEecCCCCH
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKL--VTVPIFSSLPS 191 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~--~~~~lh~~l~~ 191 (260)
...+++++|.+.......+..|++. ++ .+..+.|++..
T Consensus 71 ~~~~ivv~C~~G~rs~~aa~~L~~~---------G~~~~v~~l~GG~~~ 110 (122)
T cd01526 71 KDSPIYVVCRRGNDSQTAVRKLKEL---------GLERFVRDIIGGLKA 110 (122)
T ss_pred CCCcEEEECCCCCcHHHHHHHHHHc---------CCccceeeecchHHH
Confidence 3568999998887888888888874 77 57888998844
No 370
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=21.59 E-value=52 Score=25.09 Aligned_cols=56 Identities=13% Similarity=0.226 Sum_probs=34.0
Q ss_pred EEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHH------------HHHHhcccCCCCeEEEEecCc
Q 038855 150 LVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQ------------QMKVFAPAAAGFRKVILATNI 214 (260)
Q Consensus 150 LVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~------------r~~v~~~~~~g~~kVlvaTdi 214 (260)
|+.+=+...+..+++.|.. ..+.+.+..|-+.... +.+.+.....+...|++|||-
T Consensus 2 liIvE~ps~a~~i~~~l~~---------~~~~v~~~~Ghl~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~iiiatD~ 69 (100)
T PF01751_consen 2 LIIVEKPSDAKAIAKALGG---------EEYIVIATSGHLLELAKPEDYDPKDKKKQIKNLKKLLKKADEIIIATDP 69 (100)
T ss_dssp EEEESSHHHHHHHHHHSST---------TTEEEEEESSSSEESTTSSHHHCHTTHHHHHHHHHHHHSCSEEEEEC-S
T ss_pred EEEEeCHHHHHHHHHHcCC---------CCEEEEEeCCcccccccccccccccccccchhhHHHhhhccEeeecCCC
Confidence 5556666666666655542 3577888887764332 244444443567799999994
No 371
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=21.20 E-value=1e+02 Score=29.22 Aligned_cols=32 Identities=28% Similarity=0.318 Sum_probs=22.2
Q ss_pred CCCCCcccEEEEecCCcCCcchhHHHHHHHHHHh
Q 038855 5 DPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQN 38 (260)
Q Consensus 5 d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~ 38 (260)
.|....++++|||+||.++. .---++||.+-.
T Consensus 108 ~p~~g~~kV~iI~~ae~m~~--~AaNaLLKtLEE 139 (319)
T PRK08769 108 TPQYGIAQVVIVDPADAINR--AACNALLKTLEE 139 (319)
T ss_pred CcccCCcEEEEeccHhhhCH--HHHHHHHHHhhC
Confidence 46778899999999986433 334566775544
No 372
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=21.04 E-value=1.9e+02 Score=30.84 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=16.4
Q ss_pred CceEEEEeccCCHHHHHhhhCC
Q 038855 83 PLKLIIMSASLDARGFSEYFGC 104 (260)
Q Consensus 83 ~~qlil~SATl~~~~~~~~~~~ 104 (260)
..+++++|.+-+...+-.++++
T Consensus 322 ~~k~IiISS~~~~~s~tS~L~n 343 (752)
T PHA03333 322 GTKQIHISSPVDADSWISRVGE 343 (752)
T ss_pred CCceEEEeCCCCcchHHHHhhh
Confidence 3468999999877777766654
No 373
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=20.95 E-value=4.8e+02 Score=28.34 Aligned_cols=40 Identities=20% Similarity=0.227 Sum_probs=29.9
Q ss_pred HhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCcccee
Q 038855 197 VFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARS 237 (260)
Q Consensus 197 v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~~ 237 (260)
.+...++.. -.++-+++-..+=+||+|-+||..+++-+-+
T Consensus 538 llsDAPaH~-LFvLl~PVd~~~~~iPdvlcviQv~lEG~is 577 (1011)
T KOG2036|consen 538 LLSDAPAHH-LFVLLGPVDPSQNAIPDVLCVIQVCLEGRIS 577 (1011)
T ss_pred hhccCcccc-eEEEecCcCcccCCCCcceEEEEEeecceec
Confidence 344444444 4556689999888999999999999987644
No 374
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=20.79 E-value=1.4e+02 Score=28.36 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=22.3
Q ss_pred CCCCCcccEEEEecCCcCCcchhHHHHHHHHHHh
Q 038855 5 DPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQN 38 (260)
Q Consensus 5 d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~ 38 (260)
-|..+.++++||||||.++. .---++||.+-.
T Consensus 101 ~~~~~~~kv~iI~~a~~m~~--~aaNaLLK~LEE 132 (328)
T PRK05707 101 TAQLGGRKVVLIEPAEAMNR--NAANALLKSLEE 132 (328)
T ss_pred ccccCCCeEEEECChhhCCH--HHHHHHHHHHhC
Confidence 46678899999999986443 345566665543
No 375
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=20.68 E-value=2.3e+02 Score=26.35 Aligned_cols=33 Identities=39% Similarity=0.588 Sum_probs=22.8
Q ss_pred CCCCcccEEEEecCCcCCcchhH-----HHHHHHHHHhhcc
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDV-----LLGLLKKVQNARS 41 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~-----ll~~lk~~~~~~~ 41 (260)
-.|..++++.|||+ +++.|+ |+.+||+-...|.
T Consensus 161 GLL~PfkVLLLDEV---TVDLDVlARadLLeFlkeEce~Rg 198 (291)
T KOG2355|consen 161 GLLKPFKVLLLDEV---TVDLDVLARADLLEFLKEECEQRG 198 (291)
T ss_pred hcccceeEEEeeee---EeehHHHHHHHHHHHHHHHHhhcC
Confidence 35788999999999 678777 3455555444443
No 376
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=20.60 E-value=3.1e+02 Score=24.88 Aligned_cols=14 Identities=36% Similarity=0.370 Sum_probs=11.5
Q ss_pred CCcccEEEEecCCc
Q 038855 8 LSRYSVIIVDEAHE 21 (260)
Q Consensus 8 L~~~~~vIlDEahe 21 (260)
....++|||||+|.
T Consensus 98 ~~~~~vliiDe~d~ 111 (316)
T PHA02544 98 TGGGKVIIIDEFDR 111 (316)
T ss_pred cCCCeEEEEECccc
Confidence 35688999999985
No 377
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=20.55 E-value=1.9e+02 Score=28.69 Aligned_cols=14 Identities=0% Similarity=0.230 Sum_probs=11.9
Q ss_pred CCcccEEEEecCCc
Q 038855 8 LSRYSVIIVDEAHE 21 (260)
Q Consensus 8 L~~~~~vIlDEahe 21 (260)
+.+++++|+||+|.
T Consensus 200 ~~~~dvLiIDDiq~ 213 (445)
T PRK12422 200 YRNVDALFIEDIEV 213 (445)
T ss_pred cccCCEEEEcchhh
Confidence 46788999999985
No 378
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=20.30 E-value=1.2e+02 Score=31.54 Aligned_cols=31 Identities=39% Similarity=0.503 Sum_probs=19.6
Q ss_pred CCCCCcccEEEEecCCcCCcchhHHHHHHHHHH
Q 038855 5 DPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQ 37 (260)
Q Consensus 5 d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~ 37 (260)
-|...+++++|+||||..+ ..-.-++++.+-
T Consensus 114 ~P~~~~~KVIIIDEad~Lt--~~A~NaLLKtLE 144 (605)
T PRK05896 114 LPTTFKYKVYIIDEAHMLS--TSAWNALLKTLE 144 (605)
T ss_pred chhhCCcEEEEEechHhCC--HHHHHHHHHHHH
Confidence 3566789999999998533 233334455443
No 379
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=20.17 E-value=1.9e+02 Score=25.56 Aligned_cols=80 Identities=15% Similarity=0.146 Sum_probs=53.8
Q ss_pred HHhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCC--CCeEEEEecCcccc
Q 038855 140 VHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAA--GFRKVILATNIAET 217 (260)
Q Consensus 140 i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~--g~~kVlvaTdiae~ 217 (260)
+.......+.+|.+==+-.+-.++.+++.+- .+....-+.+..+|+++++...-++.++... ..|.||+--||.++
T Consensus 28 I~~~y~g~~~~vv~iLkGs~~F~~dL~r~i~--~~~e~dFm~vSSYg~~t~ssg~v~i~kDld~di~grdVLiVeDIiDs 105 (178)
T COG0634 28 ITEDYGGKDPLVVGVLKGSFPFMADLIRAID--FPLEVDFMHVSSYGGGTSSSGEVKILKDLDEDIKGRDVLIVEDIIDS 105 (178)
T ss_pred HHHhhCCCceEEEEEcccchhhHHHHHHhcC--CCceeEEEEEeccCCCcccCCceEEecccccCCCCCeEEEEeccccc
Confidence 3333334566666666666777777776642 2322234567778999999887777777543 35789999999998
Q ss_pred cCCC
Q 038855 218 SVTI 221 (260)
Q Consensus 218 gidI 221 (260)
|.|+
T Consensus 106 G~TL 109 (178)
T COG0634 106 GLTL 109 (178)
T ss_pred ChhH
Confidence 8887
No 380
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=20.12 E-value=1.2e+02 Score=32.77 Aligned_cols=45 Identities=13% Similarity=0.012 Sum_probs=0.0
Q ss_pred CCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCceE
Q 038855 7 YLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLKL 86 (260)
Q Consensus 7 ~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql 86 (260)
.++.++.||+|||| |...+-----+++......+ ..-+
T Consensus 28 ~~~~itgiiv~~Ah-r~~~~~~eaFI~rlyr~~n~-----------------------------------------~gfI 65 (814)
T TIGR00596 28 PPELITGILVLRAD-RIIESSQEAFILRLYRQKNK-----------------------------------------TGFI 65 (814)
T ss_pred CHHHccEEEEeecc-cccccccHHHHHHHHHHhCC-----------------------------------------Ccce
Q ss_pred EEEeccC
Q 038855 87 IIMSASL 93 (260)
Q Consensus 87 il~SATl 93 (260)
.+|||+.
T Consensus 66 kafSdsP 72 (814)
T TIGR00596 66 KAFSDNP 72 (814)
T ss_pred EEecCCC
No 381
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=20.08 E-value=3.3e+02 Score=25.17 Aligned_cols=12 Identities=33% Similarity=0.545 Sum_probs=9.9
Q ss_pred CcccEEEEecCC
Q 038855 9 SRYSVIIVDEAH 20 (260)
Q Consensus 9 ~~~~~vIlDEah 20 (260)
.++++||+|-+=
T Consensus 153 ~~~D~ViIDt~G 164 (270)
T PRK06731 153 ARVDYILIDTAG 164 (270)
T ss_pred CCCCEEEEECCC
Confidence 368999999993
Done!