Query 038855
Match_columns 260
No_of_seqs 112 out of 1347
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 06:03:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038855.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038855hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 100.0 2E-37 6.7E-42 315.4 20.8 217 3-260 201-424 (773)
2 2va8_A SSO2462, SKI2-type heli 99.9 1.5E-24 5.1E-29 216.1 15.0 200 8-260 143-386 (715)
3 2p6r_A Afuhel308 helicase; pro 99.9 1.4E-24 4.7E-29 216.4 14.5 195 8-260 136-366 (702)
4 2jlq_A Serine protease subunit 99.9 2.3E-24 7.9E-29 205.5 11.0 184 4-260 104-290 (451)
5 3fht_A ATP-dependent RNA helic 99.9 9.2E-24 3.1E-28 192.8 12.4 142 83-236 200-347 (412)
6 2db3_A ATP-dependent RNA helic 99.9 2.7E-23 9.3E-28 196.2 15.2 184 6-243 199-389 (434)
7 3pey_A ATP-dependent RNA helic 99.9 1.8E-23 6.1E-28 189.1 12.7 140 83-234 177-322 (395)
8 2z83_A Helicase/nucleoside tri 99.9 1.2E-23 4E-28 201.3 12.1 184 3-260 105-292 (459)
9 2v6i_A RNA helicase; membrane, 99.9 5.6E-23 1.9E-27 195.1 12.5 183 4-260 87-270 (431)
10 3eiq_A Eukaryotic initiation f 99.9 8E-24 2.7E-28 193.7 5.4 183 7-243 180-369 (414)
11 1yks_A Genome polyprotein [con 99.9 7.4E-23 2.5E-27 194.9 11.5 185 4-260 93-278 (440)
12 2zj8_A DNA helicase, putative 99.9 1.2E-22 4E-27 203.0 13.2 194 7-260 135-365 (720)
13 2j0s_A ATP-dependent RNA helic 99.9 4.2E-23 1.4E-27 189.8 9.1 184 6-243 175-365 (410)
14 2whx_A Serine protease/ntpase/ 99.9 1.2E-22 4E-27 202.3 11.8 185 3-260 270-457 (618)
15 1xti_A Probable ATP-dependent 99.9 1.9E-21 6.4E-26 176.7 16.9 181 6-240 148-336 (391)
16 3fmp_B ATP-dependent RNA helic 99.9 2.9E-23 1E-27 196.6 4.1 150 83-244 267-429 (479)
17 1hv8_A Putative ATP-dependent 99.9 1.1E-21 3.8E-26 175.6 14.1 144 83-241 178-325 (367)
18 1s2m_A Putative ATP-dependent 99.9 3.1E-21 1E-25 176.5 15.8 180 6-240 159-344 (400)
19 2i4i_A ATP-dependent RNA helic 99.9 1.5E-21 5E-26 179.2 13.0 148 83-243 210-365 (417)
20 2wv9_A Flavivirin protease NS2 99.9 7.7E-22 2.6E-26 198.4 11.7 186 3-260 325-512 (673)
21 3i5x_A ATP-dependent RNA helic 99.9 3.1E-21 1.1E-25 185.8 15.0 155 83-243 264-431 (563)
22 2v1x_A ATP-dependent DNA helic 99.9 8.2E-21 2.8E-25 187.9 16.9 152 83-243 200-356 (591)
23 3o8b_A HCV NS3 protease/helica 99.9 2.4E-21 8.3E-26 194.9 12.6 98 145-260 395-496 (666)
24 3sqw_A ATP-dependent RNA helic 99.9 5.9E-21 2E-25 186.1 14.9 155 83-243 213-380 (579)
25 1fuu_A Yeast initiation factor 99.8 4.6E-22 1.6E-26 180.5 5.2 149 83-243 193-348 (394)
26 3l9o_A ATP-dependent RNA helic 99.8 2.4E-21 8.2E-26 203.9 11.2 201 8-260 288-575 (1108)
27 1oyw_A RECQ helicase, ATP-depe 99.8 4.6E-20 1.6E-24 179.4 14.4 146 83-242 174-324 (523)
28 2z0m_A 337AA long hypothetical 99.8 5.2E-20 1.8E-24 163.3 12.9 139 83-240 160-302 (337)
29 3rc3_A ATP-dependent RNA helic 99.8 3.8E-20 1.3E-24 186.4 12.4 185 6-260 235-422 (677)
30 3fho_A ATP-dependent RNA helic 99.8 6.7E-21 2.3E-25 183.7 3.3 174 7-234 256-436 (508)
31 4a4z_A Antiviral helicase SKI2 99.8 2E-19 6.9E-24 187.5 13.4 117 134-260 324-470 (997)
32 2xgj_A ATP-dependent RNA helic 99.8 5.9E-19 2E-23 184.3 15.8 168 83-260 223-477 (1010)
33 3tbk_A RIG-I helicase domain; 99.8 2.9E-18 1E-22 161.8 16.2 101 144-244 387-492 (555)
34 2ykg_A Probable ATP-dependent 99.8 1.4E-18 4.7E-23 171.2 14.1 95 145-244 397-501 (696)
35 4a2p_A RIG-I, retinoic acid in 99.8 1.7E-18 6E-23 164.1 13.8 101 144-244 388-493 (556)
36 3oiy_A Reverse gyrase helicase 99.8 2.1E-19 7.2E-24 166.6 4.2 137 83-243 193-343 (414)
37 1wp9_A ATP-dependent RNA helic 99.8 8.7E-18 3E-22 153.6 14.3 84 144-236 359-450 (494)
38 4gl2_A Interferon-induced heli 99.7 5.5E-19 1.9E-23 174.0 5.8 95 146-243 400-503 (699)
39 3eaq_A Heat resistant RNA depe 99.7 3.1E-18 1.1E-22 147.9 9.2 113 118-243 7-120 (212)
40 4f92_B U5 small nuclear ribonu 99.7 1.6E-17 5.3E-22 181.3 15.0 170 83-260 244-451 (1724)
41 3i32_A Heat resistant RNA depe 99.7 6.1E-18 2.1E-22 154.9 8.3 114 117-243 3-117 (300)
42 4a2q_A RIG-I, retinoic acid in 99.7 6.3E-17 2.2E-21 163.7 13.4 100 144-244 629-734 (797)
43 1fuk_A Eukaryotic initiation f 99.7 8.6E-17 2.9E-21 132.8 11.6 116 117-244 4-120 (165)
44 4f92_B U5 small nuclear ribonu 99.7 3.1E-16 1E-20 171.2 18.8 148 83-230 1083-1264(1724)
45 2hjv_A ATP-dependent RNA helic 99.7 5.8E-17 2E-21 133.8 10.1 115 116-243 9-124 (163)
46 4ddu_A Reverse gyrase; topoiso 99.7 1.1E-17 3.8E-22 176.1 7.0 128 83-234 250-388 (1104)
47 2eyq_A TRCF, transcription-rep 99.7 1.5E-16 5.1E-21 168.1 15.2 136 83-231 751-890 (1151)
48 2rb4_A ATP-dependent RNA helic 99.7 6.3E-17 2.2E-21 134.7 8.8 106 116-233 7-112 (175)
49 1t5i_A C_terminal domain of A 99.7 2.3E-16 7.7E-21 131.9 11.3 113 116-241 5-118 (172)
50 2p6n_A ATP-dependent RNA helic 99.7 1.3E-16 4.4E-21 136.2 7.9 130 100-243 10-143 (191)
51 4a2w_A RIG-I, retinoic acid in 99.7 6.3E-16 2.2E-20 159.9 14.6 101 144-244 629-734 (936)
52 1gm5_A RECG; helicase, replica 99.6 5.7E-17 2E-21 165.6 3.0 141 83-234 516-668 (780)
53 2jgn_A DBX, DDX3, ATP-dependen 99.6 6.3E-16 2.2E-20 130.9 7.0 114 116-242 19-134 (185)
54 1gku_B Reverse gyrase, TOP-RG; 99.6 1.1E-16 3.7E-21 167.7 2.2 129 83-234 215-353 (1054)
55 2yjt_D ATP-dependent RNA helic 99.4 1.3E-16 4.3E-21 132.6 0.0 103 133-244 17-120 (170)
56 1c4o_A DNA nucleotide excision 99.6 1.1E-14 3.7E-19 145.9 13.4 133 83-232 380-516 (664)
57 3h1t_A Type I site-specific re 99.6 2E-14 6.8E-19 140.0 14.7 90 145-236 438-530 (590)
58 2d7d_A Uvrabc system protein B 99.6 1.7E-14 5.8E-19 144.4 13.8 133 83-232 386-522 (661)
59 2oca_A DAR protein, ATP-depend 99.5 7.6E-14 2.6E-18 132.7 13.3 80 146-235 348-428 (510)
60 2fwr_A DNA repair protein RAD2 99.5 4.4E-15 1.5E-19 139.9 1.3 88 134-235 337-424 (472)
61 1nkt_A Preprotein translocase 99.5 4E-14 1.4E-18 146.0 7.2 123 85-224 397-527 (922)
62 1tf5_A Preprotein translocase 99.5 2.9E-13 1E-17 139.0 12.3 145 85-244 369-528 (844)
63 2fsf_A Preprotein translocase 99.4 9.6E-13 3.3E-17 135.2 12.3 143 85-244 378-566 (853)
64 3dmq_A RNA polymerase-associat 99.4 2E-13 6.8E-18 141.9 6.7 96 133-236 490-587 (968)
65 3jux_A Protein translocase sub 99.4 7.4E-13 2.5E-17 134.7 10.2 145 85-244 411-570 (822)
66 1z63_A Helicase of the SNF2/RA 99.3 2.6E-11 9E-16 114.9 11.8 84 145-236 340-425 (500)
67 2w00_A HSDR, R.ECOR124I; ATP-b 99.1 1.5E-09 5.1E-14 114.0 14.7 88 146-234 537-677 (1038)
68 3llm_A ATP-dependent RNA helic 99.0 2.5E-10 8.4E-15 98.9 6.7 63 7-110 173-235 (235)
69 1z5z_A Helicase of the SNF2/RA 99.0 7.3E-10 2.5E-14 99.5 8.8 89 145-241 111-202 (271)
70 3mwy_W Chromo domain-containin 98.9 9.6E-09 3.3E-13 104.4 11.5 104 145-257 571-686 (800)
71 1z3i_X Similar to RAD54-like; 98.6 1.1E-07 3.9E-12 94.4 10.3 91 137-236 407-500 (644)
72 2vl7_A XPD; helicase, unknown 98.3 2.1E-07 7E-12 90.7 1.7 94 131-240 370-469 (540)
73 1qde_A EIF4A, translation init 98.0 5.6E-06 1.9E-10 69.7 4.4 68 6-115 151-221 (224)
74 3iuy_A Probable ATP-dependent 97.8 1.3E-05 4.5E-10 67.9 4.7 62 6-109 163-227 (228)
75 3dkp_A Probable ATP-dependent 97.8 1.9E-05 6.6E-10 67.6 4.8 67 6-113 171-243 (245)
76 3ber_A Probable ATP-dependent 97.7 2.2E-05 7.5E-10 68.4 4.8 63 6-110 182-247 (249)
77 2pl3_A Probable ATP-dependent 97.7 2.4E-05 8.2E-10 66.6 4.8 65 6-112 167-234 (236)
78 2gxq_A Heat resistant RNA depe 97.7 2.1E-05 7.3E-10 65.1 4.1 28 83-110 175-205 (207)
79 3fe2_A Probable ATP-dependent 97.7 2.7E-05 9.3E-10 66.9 4.6 65 6-112 172-239 (242)
80 1q0u_A Bstdead; DEAD protein, 97.6 2.8E-05 9.6E-10 65.6 3.8 30 83-112 181-213 (219)
81 1vec_A ATP-dependent RNA helic 97.6 5.4E-05 1.9E-09 62.7 5.4 15 7-21 143-157 (206)
82 1t6n_A Probable ATP-dependent 97.6 5.9E-05 2E-09 63.4 5.3 27 83-109 190-219 (220)
83 3bor_A Human initiation factor 97.6 4.8E-05 1.6E-09 65.3 4.2 28 83-110 204-234 (237)
84 2oxc_A Probable ATP-dependent 97.5 4E-05 1.4E-09 65.3 3.3 28 83-110 198-228 (230)
85 3fmo_B ATP-dependent RNA helic 97.5 6.3E-05 2.2E-09 67.6 3.6 29 83-111 267-298 (300)
86 3ly5_A ATP-dependent RNA helic 97.4 8E-05 2.7E-09 65.3 4.0 24 6-30 197-220 (262)
87 4a15_A XPD helicase, ATP-depen 97.2 0.00068 2.3E-08 67.3 7.9 139 83-236 375-529 (620)
88 1wrb_A DJVLGB; RNA helicase, D 97.1 0.00037 1.3E-08 59.9 4.5 30 83-112 209-241 (253)
89 2ipc_A Preprotein translocase 97.1 0.0054 1.9E-07 64.0 13.4 79 85-167 380-464 (997)
90 3crv_A XPD/RAD3 related DNA he 96.7 0.01 3.6E-07 57.4 11.1 139 84-240 316-478 (551)
91 3b6e_A Interferon-induced heli 96.3 0.0023 7.8E-08 52.6 3.5 28 6-34 158-185 (216)
92 1rif_A DAR protein, DNA helica 94.8 0.019 6.4E-07 50.2 3.7 16 7-22 222-237 (282)
93 1gm5_A RECG; helicase, replica 94.1 0.15 5.1E-06 52.1 9.0 78 146-228 417-495 (780)
94 1t6n_A Probable ATP-dependent 93.3 0.51 1.7E-05 38.9 9.6 76 146-228 82-163 (220)
95 2oxc_A Probable ATP-dependent 93.0 0.64 2.2E-05 38.9 9.8 76 144-228 90-171 (230)
96 1vec_A ATP-dependent RNA helic 92.8 1.4 4.9E-05 35.6 11.4 76 145-228 70-151 (206)
97 3oiy_A Reverse gyrase helicase 92.7 0.24 8.3E-06 45.0 7.2 79 144-228 62-144 (414)
98 3fe2_A Probable ATP-dependent 92.4 0.51 1.7E-05 39.9 8.4 74 146-228 102-181 (242)
99 2eyq_A TRCF, transcription-rep 91.7 0.53 1.8E-05 49.9 9.3 79 145-228 651-730 (1151)
100 1qde_A EIF4A, translation init 91.5 0.77 2.6E-05 37.8 8.4 75 144-228 80-160 (224)
101 3ber_A Probable ATP-dependent 91.4 1.5 5.2E-05 37.4 10.4 78 142-228 107-191 (249)
102 3bor_A Human initiation factor 90.8 0.99 3.4E-05 38.0 8.5 76 145-228 97-178 (237)
103 2gxq_A Heat resistant RNA depe 90.2 0.79 2.7E-05 37.1 7.2 73 145-228 71-149 (207)
104 1xti_A Probable ATP-dependent 89.9 1.6 5.6E-05 38.5 9.5 76 146-228 76-157 (391)
105 3iuy_A Probable ATP-dependent 89.7 0.73 2.5E-05 38.2 6.6 74 145-228 93-172 (228)
106 1q0u_A Bstdead; DEAD protein, 88.8 1.1 3.6E-05 37.1 7.0 79 145-228 71-155 (219)
107 2v1x_A ATP-dependent DNA helic 88.7 0.94 3.2E-05 44.4 7.6 60 145-213 83-144 (591)
108 1wrb_A DJVLGB; RNA helicase, D 88.2 1.8 6E-05 36.5 8.1 73 147-228 101-179 (253)
109 3ly5_A ATP-dependent RNA helic 88.0 3 0.0001 35.8 9.6 75 145-228 125-206 (262)
110 2i4i_A ATP-dependent RNA helic 87.9 4.6 0.00016 35.9 11.2 73 147-228 102-180 (417)
111 2pl3_A Probable ATP-dependent 87.5 1.6 5.5E-05 36.3 7.4 73 146-228 97-176 (236)
112 1hv8_A Putative ATP-dependent 87.0 4.5 0.00015 35.0 10.2 75 144-228 72-152 (367)
113 1fuu_A Yeast initiation factor 86.9 3 0.0001 36.8 9.1 74 145-228 88-167 (394)
114 1s2m_A Putative ATP-dependent 86.2 4.6 0.00016 35.8 10.1 75 145-228 88-168 (400)
115 2db3_A ATP-dependent RNA helic 85.2 4.7 0.00016 37.2 9.9 74 146-228 129-208 (434)
116 1wp9_A ATP-dependent RNA helic 85.2 4.5 0.00015 36.0 9.5 75 144-228 50-130 (494)
117 1oyw_A RECQ helicase, ATP-depe 84.8 1.1 3.6E-05 43.1 5.4 59 146-213 65-123 (523)
118 2z0m_A 337AA long hypothetical 84.2 3.1 0.0001 35.7 7.7 73 146-228 56-134 (337)
119 4ddu_A Reverse gyrase; topoiso 83.6 1.4 4.9E-05 46.5 6.2 78 144-228 119-201 (1104)
120 3dkp_A Probable ATP-dependent 82.9 4.7 0.00016 33.6 8.1 75 146-228 98-180 (245)
121 2j0s_A ATP-dependent RNA helic 81.5 6.7 0.00023 35.0 9.1 75 145-228 104-184 (410)
122 3eiq_A Eukaryotic initiation f 81.3 11 0.00037 33.4 10.3 76 145-228 107-188 (414)
123 3tbk_A RIG-I helicase domain; 81.0 2.7 9.2E-05 38.8 6.4 74 146-228 52-132 (555)
124 4a2p_A RIG-I, retinoic acid in 79.2 4 0.00014 37.8 6.9 74 146-228 55-135 (556)
125 3fmo_B ATP-dependent RNA helic 78.5 3.6 0.00012 36.3 6.2 72 146-228 162-240 (300)
126 1gku_B Reverse gyrase, TOP-RG; 77.0 4.9 0.00017 42.1 7.6 77 145-228 98-180 (1054)
127 4a2q_A RIG-I, retinoic acid in 73.7 7 0.00024 39.1 7.5 74 146-228 296-376 (797)
128 1z3i_X Similar to RAD54-like; 68.5 2.5 8.5E-05 41.6 2.7 13 9-21 191-203 (644)
129 3b6e_A Interferon-induced heli 65.1 8.3 0.00028 30.8 4.9 58 146-213 82-140 (216)
130 3pey_A ATP-dependent RNA helic 62.3 32 0.0011 29.8 8.6 71 145-228 74-150 (395)
131 2ykg_A Probable ATP-dependent 60.3 13 0.00044 35.9 6.1 73 147-228 62-141 (696)
132 4a2w_A RIG-I, retinoic acid in 59.3 11 0.00038 38.8 5.6 59 146-213 296-354 (936)
133 3fht_A ATP-dependent RNA helic 57.4 37 0.0013 29.8 8.1 73 145-228 94-173 (412)
134 2fsf_A Preprotein translocase 56.8 29 0.00098 36.0 8.1 58 145-213 114-171 (853)
135 3te6_A Regulatory protein SIR3 56.7 13 0.00044 33.7 5.0 26 10-36 132-157 (318)
136 1tf5_A Preprotein translocase 56.6 42 0.0014 34.7 9.2 57 146-213 124-180 (844)
137 4gl2_A Interferon-induced heli 53.3 7.7 0.00026 37.6 3.1 73 146-228 56-141 (699)
138 1njg_A DNA polymerase III subu 51.4 23 0.0008 27.9 5.3 27 8-36 124-150 (250)
139 3fmp_B ATP-dependent RNA helic 50.9 44 0.0015 30.6 7.8 72 146-228 162-240 (479)
140 3hgt_A HDA1 complex subunit 3; 49.7 68 0.0023 29.4 8.7 74 145-232 124-204 (328)
141 2ipc_A Preprotein translocase 49.5 56 0.0019 34.4 8.9 58 145-213 119-176 (997)
142 1sxj_E Activator 1 40 kDa subu 47.1 23 0.00079 30.9 5.0 29 8-38 132-160 (354)
143 1a5t_A Delta prime, HOLB; zinc 45.6 19 0.00065 31.9 4.3 30 5-36 103-132 (334)
144 3i5x_A ATP-dependent RNA helic 45.5 88 0.003 29.1 9.1 63 147-213 147-209 (563)
145 1nkt_A Preprotein translocase 44.7 61 0.0021 33.9 8.3 57 146-213 152-208 (922)
146 1rif_A DAR protein, DNA helica 43.7 44 0.0015 28.4 6.2 57 145-213 156-212 (282)
147 2gno_A DNA polymerase III, gam 43.0 20 0.0007 31.8 4.0 30 5-36 77-106 (305)
148 2oca_A DAR protein, ATP-depend 42.9 50 0.0017 30.4 6.9 58 145-214 156-213 (510)
149 3sqw_A ATP-dependent RNA helic 42.4 1E+02 0.0035 29.2 9.1 64 146-213 95-158 (579)
150 1jr3_A DNA polymerase III subu 42.3 27 0.00092 30.5 4.6 29 6-36 115-143 (373)
151 1w36_D RECD, exodeoxyribonucle 41.2 16 0.00054 35.7 3.2 23 10-34 262-284 (608)
152 1uaa_A REP helicase, protein ( 37.6 1.9E+02 0.0065 27.9 10.3 44 133-185 327-372 (673)
153 1jr3_D DNA polymerase III, del 36.8 59 0.002 28.4 6.0 30 6-36 72-101 (343)
154 2p6r_A Afuhel308 helicase; pro 35.7 43 0.0015 32.7 5.4 70 146-228 68-143 (702)
155 3l9o_A ATP-dependent RNA helic 35.7 72 0.0025 33.6 7.4 64 145-228 226-295 (1108)
156 1pjr_A PCRA; DNA repair, DNA r 35.4 2.3E+02 0.0079 27.8 10.7 45 133-186 336-382 (724)
157 3o8b_A HCV NS3 protease/helica 34.5 61 0.0021 32.4 6.3 64 146-228 257-323 (666)
158 3fho_A ATP-dependent RNA helic 34.0 1.3E+02 0.0044 28.1 8.2 70 146-228 189-264 (508)
159 3u61_B DNA polymerase accessor 33.5 65 0.0022 27.7 5.7 15 7-21 102-116 (324)
160 2w58_A DNAI, primosome compone 32.7 25 0.00084 28.1 2.6 17 86-102 151-167 (202)
161 2chg_A Replication factor C sm 32.7 62 0.0021 25.1 5.0 13 9-21 101-113 (226)
162 3lfu_A DNA helicase II; SF1 he 31.7 3.3E+02 0.011 25.6 10.9 124 10-188 213-380 (647)
163 2vl7_A XPD; helicase, unknown 30.5 16 0.00055 34.9 1.3 15 7-21 172-186 (540)
164 3upu_A ATP-dependent DNA helic 30.1 3.2E+02 0.011 25.0 12.0 24 148-171 254-277 (459)
165 3hjh_A Transcription-repair-co 30.1 44 0.0015 31.9 4.3 72 145-222 38-119 (483)
166 3ec2_A DNA replication protein 30.0 92 0.0032 24.2 5.6 12 10-21 100-111 (180)
167 2fwr_A DNA repair protein RAD2 29.9 34 0.0012 31.2 3.4 46 146-213 133-179 (472)
168 3bos_A Putative DNA replicatio 29.7 34 0.0012 27.4 3.0 17 8-24 102-118 (242)
169 3syl_A Protein CBBX; photosynt 29.0 62 0.0021 27.4 4.7 11 11-21 131-141 (309)
170 2zj8_A DNA helicase, putative 28.9 19 0.00065 35.4 1.5 70 146-228 68-143 (720)
171 2fz4_A DNA repair protein RAD2 27.4 52 0.0018 27.6 3.9 46 146-213 133-179 (237)
172 1iqp_A RFCS; clamp loader, ext 26.3 83 0.0028 26.5 5.0 14 9-22 109-122 (327)
173 1c4o_A DNA nucleotide excision 26.1 1.2E+02 0.004 29.8 6.7 67 146-219 53-144 (664)
174 1vp8_A Hypothetical protein AF 25.4 2E+02 0.0068 24.6 7.1 86 117-215 15-108 (201)
175 2va8_A SSO2462, SKI2-type heli 25.4 29 0.001 33.9 2.1 71 145-228 74-150 (715)
176 2kjq_A DNAA-related protein; s 25.2 53 0.0018 25.6 3.3 14 8-21 81-94 (149)
177 2qgz_A Helicase loader, putati 24.7 44 0.0015 29.4 3.0 17 86-102 250-266 (308)
178 2qen_A Walker-type ATPase; unk 24.4 89 0.003 26.5 4.9 10 12-21 130-139 (350)
179 1sxj_D Activator 1 41 kDa subu 24.1 85 0.0029 26.9 4.7 14 9-22 132-145 (353)
180 2qz4_A Paraplegin; AAA+, SPG7, 23.5 73 0.0025 26.1 4.0 11 11-21 99-109 (262)
181 3k9c_A Transcriptional regulat 22.9 3.2E+02 0.011 22.5 9.2 131 86-227 70-218 (289)
182 1sxj_B Activator 1 37 kDa subu 22.8 70 0.0024 27.0 3.8 13 10-22 107-119 (323)
183 1wv9_A Rhodanese homolog TT165 22.5 94 0.0032 21.8 4.0 35 147-190 54-88 (94)
184 1g5t_A COB(I)alamin adenosyltr 22.4 46 0.0016 28.1 2.5 25 9-33 119-147 (196)
185 3crv_A XPD/RAD3 related DNA he 21.9 29 0.00098 33.1 1.3 13 9-21 172-184 (551)
186 1l8q_A Chromosomal replication 21.8 99 0.0034 26.6 4.7 12 10-21 98-109 (324)
187 1sxj_A Activator 1 95 kDa subu 21.7 1E+02 0.0035 29.0 5.1 15 9-23 147-161 (516)
188 3mwy_W Chromo domain-containin 21.5 2.5E+02 0.0084 28.0 8.1 62 144-213 284-353 (800)
189 2xgj_A ATP-dependent RNA helic 21.4 1.2E+02 0.0042 31.5 6.0 64 145-228 128-197 (1010)
190 1z63_A Helicase of the SNF2/RA 21.0 1.4E+02 0.0049 27.2 5.8 58 139-213 79-136 (500)
191 1sxj_C Activator 1 40 kDa subu 20.0 1.3E+02 0.0043 26.3 5.0 16 8-23 108-123 (340)
192 2l82_A Designed protein OR32; 20.0 2.6E+02 0.0088 22.1 6.2 44 150-202 6-49 (162)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=2e-37 Score=315.39 Aligned_cols=217 Identities=52% Similarity=0.788 Sum_probs=199.8
Q ss_pred ccCCCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCC
Q 038855 3 LLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFP 82 (260)
Q Consensus 3 ~~d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (260)
+.++.+.++++|||||+|+|+++.|.++++++.+...++
T Consensus 201 ~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~----------------------------------------- 239 (773)
T 2xau_A 201 MEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP----------------------------------------- 239 (773)
T ss_dssp HHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-----------------------------------------
T ss_pred hhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-----------------------------------------
Confidence 357889999999999999999999999999999987766
Q ss_pred CceEEEEeccCCHHHHHhhhCCCcEEEecCceeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHH
Q 038855 83 PLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESV 162 (260)
Q Consensus 83 ~~qlil~SATl~~~~~~~~~~~~~~v~v~~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v 162 (260)
..|+++||||++.+.+.+||++++++.++++.+|++++|...+..++....+..+.+++....++++||||||+++++.+
T Consensus 240 ~~~iIl~SAT~~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l 319 (773)
T 2xau_A 240 DLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDA 319 (773)
T ss_dssp TCEEEEEESCSCCHHHHHHTTSCCEEECCCCCCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHH
T ss_pred CceEEEEeccccHHHHHHHhcCCCcccccCcccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHH
Confidence 78999999999999999999999999999999999999999888898888888888888887899999999999999999
Q ss_pred HHHHHHHHhcC--ccCCCCeEEEEecCCCCHHHHHHHhcccC-----CCCeEEEEecCcccccCCCCCceEEEeCCCccc
Q 038855 163 ERLVQERLLQL--PEASRKLVTVPIFSSLPSEQQMKVFAPAA-----AGFRKVILATNIAETSVTIPGIKYVIDPGFVKA 235 (260)
Q Consensus 163 ~~~L~~~l~~~--~~~~~~~~~~~lh~~l~~~~r~~v~~~~~-----~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~ 235 (260)
++.|.+.+..+ .....++.+.++||+|++++|.++++.|+ +|.++||||||+||+|||||+|++|||+|+++.
T Consensus 320 ~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~ 399 (773)
T 2xau_A 320 VRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQ 399 (773)
T ss_dssp HHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEE
T ss_pred HHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccc
Confidence 99998744322 12225889999999999999999999999 999999999999999999999999999999999
Q ss_pred eeeecCCCceeeeEEeeehhhhhcC
Q 038855 236 RSYDPVKGMESLIVVPISKAQALQR 260 (260)
Q Consensus 236 ~~yd~~~g~~~l~~~~isk~~~~qR 260 (260)
..|||..|++.|.+.|+|++++.||
T Consensus 400 ~~yd~~~g~~~L~~~p~S~~s~~QR 424 (773)
T 2xau_A 400 KVYNPRIRVESLLVSPISKASAQQR 424 (773)
T ss_dssp EEEETTTTEEEEEEEECCHHHHHHH
T ss_pred eeeccccCccccccccCCHHHHHhh
Confidence 9999999999999999999999997
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.92 E-value=1.5e-24 Score=216.08 Aligned_cols=200 Identities=17% Similarity=0.136 Sum_probs=137.3
Q ss_pred CCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCceEE
Q 038855 8 LSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLKLI 87 (260)
Q Consensus 8 L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qli 87 (260)
++++++||+||+|+.. +. .....++.+....+ +.|+|
T Consensus 143 l~~~~~vIiDE~H~l~-~~-~~~~~l~~i~~~~~-----------------------------------------~~~ii 179 (715)
T 2va8_A 143 LNEVNYFVLDELHYLN-DP-ERGPVVESVTIRAK-----------------------------------------RRNLL 179 (715)
T ss_dssp GGGEEEEEECSGGGGG-CT-TTHHHHHHHHHHHH-----------------------------------------TSEEE
T ss_pred hhccCEEEEechhhcC-Cc-ccchHHHHHHHhcc-----------------------------------------cCcEE
Confidence 8899999999999743 21 22233444443333 57899
Q ss_pred EEeccC-CHHHHHhhhCCCcEEEecCceeeeeEEEeeCC-----------C---cch--HHHHHHHHHHHHhhcCCCCEE
Q 038855 88 IMSASL-DARGFSEYFGCAKAVHVQGRQFPVEILYTLYP-----------E---PDF--LDATLITIFQVHLDEAPGDIL 150 (260)
Q Consensus 88 l~SATl-~~~~~~~~~~~~~~v~v~~~~~~v~~~~~~~~-----------~---~~~--~~~~~~~l~~i~~~~~~g~iL 150 (260)
+||||+ +.+.+++||+ ++.+....+.+|++..+.... . ... .......+.+.+. .++++|
T Consensus 180 ~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L 256 (715)
T 2va8_A 180 ALSATISNYKQIAKWLG-AEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLS--KNGQVL 256 (715)
T ss_dssp EEESCCTTHHHHHHHHT-CEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHT--TTCCEE
T ss_pred EEcCCCCCHHHHHHHhC-CCccCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHHh--cCCCEE
Confidence 999999 4899999997 566777777777765543211 1 000 1233444444443 468999
Q ss_pred EEeCCHHHHHHHHHHHHHHHhc--Ccc--------------CC-----------CCeEEEEecCCCCHHHHHHHhcccCC
Q 038855 151 VFLTGQEEIESVERLVQERLLQ--LPE--------------AS-----------RKLVTVPIFSSLPSEQQMKVFAPAAA 203 (260)
Q Consensus 151 VFl~~~~~ve~v~~~L~~~l~~--~~~--------------~~-----------~~~~~~~lh~~l~~~~r~~v~~~~~~ 203 (260)
||+||+.+++.+++.|.+.+.. +.. .. -+..+.++||+|++++|..+++.|++
T Consensus 257 VF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~ 336 (715)
T 2va8_A 257 VFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQ 336 (715)
T ss_dssp EECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHT
T ss_pred EEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHc
Confidence 9999999999999999875321 000 00 01358999999999999999999999
Q ss_pred CCeEEEEecCcccccCCCCCceEEEeCCCccceeeecCCCceeeeEEeeehhhhhcC
Q 038855 204 GFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYDPVKGMESLIVVPISKAQALQR 260 (260)
Q Consensus 204 g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~~yd~~~g~~~l~~~~isk~~~~qR 260 (260)
|.++|||||+++++|||+|++++||+. ...||+.++.. ..|+|++++.||
T Consensus 337 g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~~~~s~~~~~Qr 386 (715)
T 2va8_A 337 RKIKVIVATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---YDEIPIMEYKQM 386 (715)
T ss_dssp TCSCEEEECGGGGGSSCCCBSEEEECC----C-----------------CHHHHHHH
T ss_pred CCCeEEEEChHHhcccCCCceEEEEeC----CeeccccCCCC---CCcCCHHHHHHH
Confidence 999999999999999999999999998 46789877664 789999999997
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.91 E-value=1.4e-24 Score=216.44 Aligned_cols=195 Identities=18% Similarity=0.200 Sum_probs=147.4
Q ss_pred CCcccEEEEecCCc-----CCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCC
Q 038855 8 LSRYSVIIVDEAHE-----RTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFP 82 (260)
Q Consensus 8 L~~~~~vIlDEahe-----r~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (260)
++++++||+||||+ |....+.++..++. .++
T Consensus 136 l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~---~~~----------------------------------------- 171 (702)
T 2p6r_A 136 IKAVSCLVVDEIHLLDSEKRGATLEILVTKMRR---MNK----------------------------------------- 171 (702)
T ss_dssp GGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHH---HCT-----------------------------------------
T ss_pred HhhcCEEEEeeeeecCCCCcccHHHHHHHHHHh---cCc-----------------------------------------
Confidence 78999999999997 66555555555543 333
Q ss_pred CceEEEEeccCC-HHHHHhhhCCCcEEEecCceeeeeEEEeeCCCcchHHH---------HHHHHHHHHhhcCCCCEEEE
Q 038855 83 PLKLIIMSASLD-ARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDFLDA---------TLITIFQVHLDEAPGDILVF 152 (260)
Q Consensus 83 ~~qlil~SATl~-~~~~~~~~~~~~~v~v~~~~~~v~~~~~~~~~~~~~~~---------~~~~l~~i~~~~~~g~iLVF 152 (260)
+.|+|+||||++ .+.+.+|++ ++.+....+.+|++..+.......+.+. ....+.+... .++++|||
T Consensus 172 ~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF 248 (702)
T 2p6r_A 172 ALRVIGLSATAPNVTEIAEWLD-ADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA--ENGGVLVF 248 (702)
T ss_dssp TCEEEEEECCCTTHHHHHHHTT-CEEEECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH--TTCCEEEE
T ss_pred CceEEEECCCcCCHHHHHHHhC-CCcccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh--cCCCEEEE
Confidence 689999999995 889999997 5677777887888776543221111100 2333333332 47899999
Q ss_pred eCCHHHHHHHHHHHHHHHhcCccCCC---------------------CeEEEEecCCCCHHHHHHHhcccCCCCeEEEEe
Q 038855 153 LTGQEEIESVERLVQERLLQLPEASR---------------------KLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILA 211 (260)
Q Consensus 153 l~~~~~ve~v~~~L~~~l~~~~~~~~---------------------~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlva 211 (260)
||++.+++.+++.|.+.+........ +..+.++||+|++++|..+++.|++|.++||||
T Consensus 249 ~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlva 328 (702)
T 2p6r_A 249 ESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVA 328 (702)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEE
Confidence 99999999999999876542110000 135788999999999999999999999999999
Q ss_pred cCcccccCCCCCceEEEeCCCccceeeecCCCceeeeEEeeehhhhhcC
Q 038855 212 TNIAETSVTIPGIKYVIDPGFVKARSYDPVKGMESLIVVPISKAQALQR 260 (260)
Q Consensus 212 Tdiae~gidIp~V~~VId~g~~~~~~yd~~~g~~~l~~~~isk~~~~qR 260 (260)
|+++++|||+|++++||+. ...|| |. ..|+|.+++.||
T Consensus 329 T~~l~~Gidip~~~~VI~~----~~~yd---~~----~~~~s~~~~~Qr 366 (702)
T 2p6r_A 329 TPTLAAGVNLPARRVIVRS----LYRFD---GY----SKRIKVSEYKQM 366 (702)
T ss_dssp CSTTTSSSCCCBSEEEECC----SEEES---SS----EEECCHHHHHHH
T ss_pred CcHHhccCCCCceEEEEcC----ceeeC---CC----CCcCCHHHHHHH
Confidence 9999999999999999997 46777 33 678999999986
No 4
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.91 E-value=2.3e-24 Score=205.48 Aligned_cols=184 Identities=16% Similarity=0.169 Sum_probs=139.4
Q ss_pred cCCCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCC
Q 038855 4 LDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPP 83 (260)
Q Consensus 4 ~d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (260)
.++.|+++++||+||||++....+.+++++.... ..+ .
T Consensus 104 ~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~-~~~-----------------------------------------~ 141 (451)
T 2jlq_A 104 SSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRV-EMG-----------------------------------------E 141 (451)
T ss_dssp HCSCCCCCSEEEEETTTCCSHHHHHHHHHHHHHH-HTT-----------------------------------------S
T ss_pred CcccccCCCEEEEeCCccCCcchHHHHHHHHHhh-cCC-----------------------------------------C
Confidence 4577899999999999987555555555553321 222 6
Q ss_pred ceEEEEeccCCHHHHHhhhCCCcEEEecCceeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHH
Q 038855 84 LKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVE 163 (260)
Q Consensus 84 ~qlil~SATl~~~~~~~~~~~~~~v~v~~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~ 163 (260)
.|+++||||++.+....++++.+.+.+. ...|...+ .. ... ... ...+++|||||++++++.++
T Consensus 142 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~-~~~p~~~~------~~----~~~----~l~-~~~~~~lVF~~s~~~a~~l~ 205 (451)
T 2jlq_A 142 AAAIFMTATPPGSTDPFPQSNSPIEDIE-REIPERSW------NT----GFD----WIT-DYQGKTVWFVPSIKAGNDIA 205 (451)
T ss_dssp CEEEEECSSCTTCCCSSCCCSSCEEEEE-CCCCSSCC------SS----SCH----HHH-HCCSCEEEECSSHHHHHHHH
T ss_pred ceEEEEccCCCccchhhhcCCCceEecC-ccCCchhh------HH----HHH----HHH-hCCCCEEEEcCCHHHHHHHH
Confidence 7999999999665444455555555543 22221111 00 011 111 23679999999999999999
Q ss_pred HHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccceeeecCCC
Q 038855 164 RLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYDPVKG 243 (260)
Q Consensus 164 ~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~~yd~~~g 243 (260)
+.|++ .++.+..+||++. .++++.|++|..+|||||+++|+|+|||+ ++|||+|+.+...|| ..+
T Consensus 206 ~~L~~---------~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d-~~~ 270 (451)
T 2jlq_A 206 NCLRK---------SGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVIL-TDG 270 (451)
T ss_dssp HHHHT---------TTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEE-CSS
T ss_pred HHHHH---------cCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccc-ccc
Confidence 99987 3788999999754 46899999999999999999999999999 999999999999998 678
Q ss_pred ceeeeE---EeeehhhhhcC
Q 038855 244 MESLIV---VPISKAQALQR 260 (260)
Q Consensus 244 ~~~l~~---~~isk~~~~qR 260 (260)
++.+.. .|+|.++..||
T Consensus 271 ~~~l~~~~~~p~s~~~y~Qr 290 (451)
T 2jlq_A 271 PERVILAGPIPVTPASAAQR 290 (451)
T ss_dssp SCEEEEEEEEECCHHHHHHH
T ss_pred cceeeecccccCCHHHHHHh
Confidence 888887 99999999997
No 5
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.90 E-value=9.2e-24 Score=192.81 Aligned_cols=142 Identities=11% Similarity=0.183 Sum_probs=114.7
Q ss_pred CceEEEEeccCCHHH---HHhhhCCCcEEEecCce---eeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCH
Q 038855 83 PLKLIIMSASLDARG---FSEYFGCAKAVHVQGRQ---FPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQ 156 (260)
Q Consensus 83 ~~qlil~SATl~~~~---~~~~~~~~~~v~v~~~~---~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~ 156 (260)
..|+++||||+.... ...+++++..+.+.... ..+.+.+...... ..+...+..+......+++||||+++
T Consensus 200 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~lvf~~~~ 276 (412)
T 3fht_A 200 NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSR---DEKFQALCNLYGAITIAQAMIFCHTR 276 (412)
T ss_dssp TCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSH---HHHHHHHHHHHHHHSSSEEEEECSSH
T ss_pred CceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCCh---HHHHHHHHHHHhhcCCCCEEEEeCCH
Confidence 679999999996542 33567776666655432 2345555554433 24555666666666778999999999
Q ss_pred HHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccce
Q 038855 157 EEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKAR 236 (260)
Q Consensus 157 ~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~ 236 (260)
..++.+++.|.+ .++.+..+||++++++|.++++.|++|..+|||||+++++|+|+|++++||++++|..+
T Consensus 277 ~~~~~l~~~L~~---------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~ 347 (412)
T 3fht_A 277 KTASWLAAELSK---------EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDK 347 (412)
T ss_dssp HHHHHHHHHHHH---------TTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCS
T ss_pred HHHHHHHHHHHh---------CCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCC
Confidence 999999999988 38889999999999999999999999999999999999999999999999999999654
No 6
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.90 E-value=2.7e-23 Score=196.22 Aligned_cols=184 Identities=16% Similarity=0.202 Sum_probs=137.1
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCce
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLK 85 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 85 (260)
..++++++||||||| |++++++...+.+.+..... .+..|
T Consensus 199 ~~l~~~~~lVlDEah-~~~~~gf~~~~~~i~~~~~~---------------------------------------~~~~q 238 (434)
T 2db3_A 199 ITFEDTRFVVLDEAD-RMLDMGFSEDMRRIMTHVTM---------------------------------------RPEHQ 238 (434)
T ss_dssp CCCTTCCEEEEETHH-HHTSTTTHHHHHHHHHCTTS---------------------------------------CSSCE
T ss_pred cccccCCeEEEccHh-hhhccCcHHHHHHHHHhcCC---------------------------------------CCCce
Confidence 357899999999999 45566554444333322210 12679
Q ss_pred EEEEeccCCHH--HH-HhhhCCCcEEEecCc---eeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHH
Q 038855 86 LIIMSASLDAR--GF-SEYFGCAKAVHVQGR---QFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEI 159 (260)
Q Consensus 86 lil~SATl~~~--~~-~~~~~~~~~v~v~~~---~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~v 159 (260)
+++||||+... .+ ..|+.+...+.+... ...+++.+....... +...+..+..... +++||||+++..+
T Consensus 239 ~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~----k~~~l~~~l~~~~-~~~lVF~~t~~~a 313 (434)
T 2db3_A 239 TLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYA----KRSKLIEILSEQA-DGTIVFVETKRGA 313 (434)
T ss_dssp EEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGG----HHHHHHHHHHHCC-TTEEEECSSHHHH
T ss_pred EEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHH----HHHHHHHHHHhCC-CCEEEEEeCcHHH
Confidence 99999999643 33 357776666655432 234566665554444 3344455554443 4599999999999
Q ss_pred HHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc-eee
Q 038855 160 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA-RSY 238 (260)
Q Consensus 160 e~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~-~~y 238 (260)
+.+++.|.+ .++.+..+||++++++|.++++.|+.|..+|||||++++||+|+|+|++||++++|.. ..|
T Consensus 314 ~~l~~~L~~---------~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y 384 (434)
T 2db3_A 314 DFLASFLSE---------KEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDY 384 (434)
T ss_dssp HHHHHHHHH---------TTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHH
T ss_pred HHHHHHHHh---------CCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHH
Confidence 999999988 4889999999999999999999999999999999999999999999999999999987 457
Q ss_pred ecCCC
Q 038855 239 DPVKG 243 (260)
Q Consensus 239 d~~~g 243 (260)
-++.|
T Consensus 385 ~qriG 389 (434)
T 2db3_A 385 VHRIG 389 (434)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 76554
No 7
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.90 E-value=1.8e-23 Score=189.05 Aligned_cols=140 Identities=14% Similarity=0.253 Sum_probs=111.7
Q ss_pred CceEEEEeccCCH--HHHH-hhhCCCcEEEecCcee---eeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCH
Q 038855 83 PLKLIIMSASLDA--RGFS-EYFGCAKAVHVQGRQF---PVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQ 156 (260)
Q Consensus 83 ~~qlil~SATl~~--~~~~-~~~~~~~~v~v~~~~~---~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~ 156 (260)
..|+++||||+.. ..+. .+++....+.+..... .+...+...... ......+..+......+++|||++++
T Consensus 177 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~lvf~~~~ 253 (395)
T 3pey_A 177 DTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNE---ADKFDVLTELYGLMTIGSSIIFVATK 253 (395)
T ss_dssp TCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSH---HHHHHHHHHHHTTTTSSEEEEECSCH
T ss_pred CcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCch---HHHHHHHHHHHHhccCCCEEEEeCCH
Confidence 6799999999964 2333 4666666555554432 244555544332 23455556666666678999999999
Q ss_pred HHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCcc
Q 038855 157 EEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVK 234 (260)
Q Consensus 157 ~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~ 234 (260)
+.++.+++.|++ .++.+..+||++++++|.++++.|+.|..+|||||+++++|+|+|++++||++++|.
T Consensus 254 ~~~~~l~~~l~~---------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~ 322 (395)
T 3pey_A 254 KTANVLYGKLKS---------EGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPT 322 (395)
T ss_dssp HHHHHHHHHHHH---------TTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCB
T ss_pred HHHHHHHHHHHh---------cCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCC
Confidence 999999999988 378899999999999999999999999999999999999999999999999999987
No 8
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.90 E-value=1.2e-23 Score=201.26 Aligned_cols=184 Identities=17% Similarity=0.179 Sum_probs=133.6
Q ss_pred ccCCCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCC
Q 038855 3 LLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFP 82 (260)
Q Consensus 3 ~~d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (260)
+.++.++++++|||||||++....++.++++...... +
T Consensus 105 ~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~~-~----------------------------------------- 142 (459)
T 2z83_A 105 MSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVEL-G----------------------------------------- 142 (459)
T ss_dssp HSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHHT-T-----------------------------------------
T ss_pred hccccccCCcEEEEECCccCCchhhHHHHHHHHHhcc-C-----------------------------------------
Confidence 4567899999999999999877777777777665432 2
Q ss_pred CceEEEEeccCCHHHHHhhh-CCCcEEEecCceeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHH
Q 038855 83 PLKLIIMSASLDARGFSEYF-GCAKAVHVQGRQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIES 161 (260)
Q Consensus 83 ~~qlil~SATl~~~~~~~~~-~~~~~v~v~~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve~ 161 (260)
..|+++||||++... ..+. ...++..+.. ..+...+. ..... .. ..++++|||||+++.++.
T Consensus 143 ~~~~il~SAT~~~~~-~~~~~~~~pi~~~~~----------~~~~~~~~-~~~~~----l~-~~~~~~LVF~~s~~~~~~ 205 (459)
T 2z83_A 143 EAAAIFMTATPPGTT-DPFPDSNAPIHDLQD----------EIPDRAWS-SGYEW----IT-EYAGKTVWFVASVKMGNE 205 (459)
T ss_dssp SCEEEEECSSCTTCC-CSSCCCSSCEEEEEC----------CCCSSCCS-SCCHH----HH-HCCSCEEEECSCHHHHHH
T ss_pred CccEEEEEcCCCcch-hhhccCCCCeEEecc----------cCCcchhH-HHHHH----HH-hcCCCEEEEeCChHHHHH
Confidence 679999999995331 1111 1223332211 11111110 01111 11 237899999999999999
Q ss_pred HHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccceeeecC
Q 038855 162 VERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYDPV 241 (260)
Q Consensus 162 v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~~yd~~ 241 (260)
+++.|++ .++.+..+||. +|.++++.|+.|..+|||||+++++|||||+ ++|||+|..+.+.|+ .
T Consensus 206 l~~~L~~---------~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~-~ 270 (459)
T 2z83_A 206 IAMCLQR---------AGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTIL-E 270 (459)
T ss_dssp HHHHHHH---------TTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEE-C
T ss_pred HHHHHHh---------cCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccc-c
Confidence 9999988 38899999984 7888999999999999999999999999999 999999999888876 4
Q ss_pred CCceeeeE---EeeehhhhhcC
Q 038855 242 KGMESLIV---VPISKAQALQR 260 (260)
Q Consensus 242 ~g~~~l~~---~~isk~~~~qR 260 (260)
.+.+.+.. .|+|+++..||
T Consensus 271 ~~~~~~~~~~d~p~s~~~~~QR 292 (459)
T 2z83_A 271 EGEGRVILGNPSPITSASAAQR 292 (459)
T ss_dssp SSSCEEEECSCEECCHHHHHHH
T ss_pred ccccccccccCCCCCHHHHHHh
Confidence 56666665 99999999997
No 9
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.89 E-value=5.6e-23 Score=195.09 Aligned_cols=183 Identities=15% Similarity=0.138 Sum_probs=137.4
Q ss_pred cCCCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCC
Q 038855 4 LDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPP 83 (260)
Q Consensus 4 ~d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (260)
.++.++++++||+||+|.+....+.....++.+.. +. .
T Consensus 87 ~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~~-~~-----------------------------------------~ 124 (431)
T 2v6i_A 87 QGVRVPNYNLYIMDEAHFLDPASVAARGYIETRVS-MG-----------------------------------------D 124 (431)
T ss_dssp HTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHH-TT-----------------------------------------S
T ss_pred cCccccCCCEEEEeCCccCCccHHHHHHHHHHHhh-CC-----------------------------------------C
Confidence 45679999999999999876655666666666542 22 6
Q ss_pred ceEEEEeccCCHHHHHhhhC-CCcEEEecCceeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHH
Q 038855 84 LKLIIMSASLDARGFSEYFG-CAKAVHVQGRQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESV 162 (260)
Q Consensus 84 ~qlil~SATl~~~~~~~~~~-~~~~v~v~~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v 162 (260)
.++++||||+... +.++.. ..++..+.. ..+...+ .. ++.... +.++++|||||++++++.+
T Consensus 125 ~~~l~~SAT~~~~-~~~~~~~~~~i~~~~~----------~~~~~~~-~~----~~~~l~-~~~~~~lVF~~~~~~~~~l 187 (431)
T 2v6i_A 125 AGAIFMTATPPGT-TEAFPPSNSPIIDEET----------RIPDKAW-NS----GYEWIT-EFDGRTVWFVHSIKQGAEI 187 (431)
T ss_dssp CEEEEEESSCTTC-CCSSCCCSSCCEEEEC----------CCCSSCC-SS----CCHHHH-SCSSCEEEECSSHHHHHHH
T ss_pred CcEEEEeCCCCcc-hhhhcCCCCceeeccc----------cCCHHHH-HH----HHHHHH-cCCCCEEEEeCCHHHHHHH
Confidence 7899999998532 112211 122222211 1111111 01 112222 2378999999999999999
Q ss_pred HHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccceeeecCC
Q 038855 163 ERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYDPVK 242 (260)
Q Consensus 163 ~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~~yd~~~ 242 (260)
++.|++. ++.+..+||+ +|.++++.|++|..+|||||+++|+|+|+| +.+|||+|.++.+.|| ..
T Consensus 188 ~~~L~~~---------~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d-~~ 252 (431)
T 2v6i_A 188 GTCLQKA---------GKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILL-DG 252 (431)
T ss_dssp HHHHHHT---------TCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEE-TT
T ss_pred HHHHHHc---------CCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceec-cc
Confidence 9999883 7889999997 577899999999999999999999999999 9999999999999999 67
Q ss_pred CceeeeEEeeehhhhhcC
Q 038855 243 GMESLIVVPISKAQALQR 260 (260)
Q Consensus 243 g~~~l~~~~isk~~~~qR 260 (260)
++......|.|.++..||
T Consensus 253 ~~vi~~~~p~~~~~~~Qr 270 (431)
T 2v6i_A 253 RVSMQGPIAITPASAAQR 270 (431)
T ss_dssp EEEEEEEEECCHHHHHHH
T ss_pred ceeecccccCCHHHHHHh
Confidence 788888999999999987
No 10
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.88 E-value=8e-24 Score=193.70 Aligned_cols=183 Identities=11% Similarity=0.241 Sum_probs=130.1
Q ss_pred CCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCceE
Q 038855 7 YLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLKL 86 (260)
Q Consensus 7 ~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql 86 (260)
.+.++++||+||||+ ..+.++...+.+.+...++ ..|+
T Consensus 180 ~~~~~~~vViDEah~-~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~ 217 (414)
T 3eiq_A 180 SPKYIKMFVLDEADE-MLSRGFKDQIYDIFQKLNS-----------------------------------------NTQV 217 (414)
T ss_dssp CSTTCCEEEECSHHH-HHHTTTHHHHHHHHTTSCT-----------------------------------------TCEE
T ss_pred ccccCcEEEEECHHH-hhccCcHHHHHHHHHhCCC-----------------------------------------CCeE
Confidence 467899999999995 2333333333333322333 6799
Q ss_pred EEEeccCCHHHH---HhhhCCCcEEEecCcee---eeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHH
Q 038855 87 IIMSASLDARGF---SEYFGCAKAVHVQGRQF---PVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIE 160 (260)
Q Consensus 87 il~SATl~~~~~---~~~~~~~~~v~v~~~~~---~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve 160 (260)
++||||+..... ..++.++..+.+..... .+.+.+........ +...+..++.....+++|||+++++.++
T Consensus 218 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~lvf~~~~~~~~ 294 (414)
T 3eiq_A 218 VLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEW---KLDTLCDLYETLTITQAVIFINTRRKVD 294 (414)
T ss_dssp EEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTT---HHHHHHHHHHSSCCSSCEEECSCHHHHH
T ss_pred EEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHh---HHHHHHHHHHhCCCCcEEEEeCCHHHHH
Confidence 999999965433 35666665555544332 24555665544442 4455666677777889999999999999
Q ss_pred HHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc-eeee
Q 038855 161 SVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA-RSYD 239 (260)
Q Consensus 161 ~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~-~~yd 239 (260)
.+++.|.+ .++.+..+||++++++|.++++.|++|..+|||||+++++|+|+|++++||++++|.. ..|.
T Consensus 295 ~l~~~l~~---------~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~ 365 (414)
T 3eiq_A 295 WLTEKMHA---------RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYI 365 (414)
T ss_dssp HHHHHHHT---------TTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHH
T ss_pred HHHHHHHh---------cCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhh
Confidence 99999987 4889999999999999999999999999999999999999999999999999999976 3566
Q ss_pred cCCC
Q 038855 240 PVKG 243 (260)
Q Consensus 240 ~~~g 243 (260)
.+.|
T Consensus 366 Qr~G 369 (414)
T 3eiq_A 366 HRIG 369 (414)
T ss_dssp HHSC
T ss_pred hhcC
Confidence 5554
No 11
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.88 E-value=7.4e-23 Score=194.95 Aligned_cols=185 Identities=18% Similarity=0.134 Sum_probs=127.9
Q ss_pred cCCCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCC
Q 038855 4 LDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPP 83 (260)
Q Consensus 4 ~d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (260)
.++.++++++||+||+|+.....+..++++..+.. +. .
T Consensus 93 ~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~-~~-----------------------------------------~ 130 (440)
T 1yks_A 93 EPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRAR-AN-----------------------------------------E 130 (440)
T ss_dssp SSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHH-TT-----------------------------------------S
T ss_pred CcccccCccEEEEECccccCcchHHHHHHHHHHhc-cC-----------------------------------------C
Confidence 45668999999999999875555556666665543 22 5
Q ss_pred ceEEEEeccCCHHHHHhhhCCCcEEEecCceeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHH
Q 038855 84 LKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVE 163 (260)
Q Consensus 84 ~qlil~SATl~~~~~~~~~~~~~~v~v~~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~ 163 (260)
.|+++||||+..+. ..+... ..|+.......+.... ...+..+. +.++++|||||+++.++.++
T Consensus 131 ~~~l~~SAT~~~~~-~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~l~-----~~~~~~lVF~~s~~~a~~l~ 194 (440)
T 1yks_A 131 SATILMTATPPGTS-DEFPHS---------NGEIEDVQTDIPSEPW-NTGHDWIL-----ADKRPTAWFLPSIRAANVMA 194 (440)
T ss_dssp CEEEEECSSCTTCC-CSSCCC---------SSCEEEEECCCCSSCC-SSSCHHHH-----HCCSCEEEECSCHHHHHHHH
T ss_pred ceEEEEeCCCCchh-hhhhhc---------CCCeeEeeeccChHHH-HHHHHHHH-----hcCCCEEEEeCCHHHHHHHH
Confidence 79999999985431 111111 1112221111121111 11111111 13689999999999999999
Q ss_pred HHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccceee-ecCC
Q 038855 164 RLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSY-DPVK 242 (260)
Q Consensus 164 ~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~~y-d~~~ 242 (260)
+.|++ .++.+..+|| ++|.++++.|++|..+|||||+++|+|||+| +++|||+|+...+.| ++..
T Consensus 195 ~~L~~---------~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~ 260 (440)
T 1yks_A 195 ASLRK---------AGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGR 260 (440)
T ss_dssp HHHHH---------TTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTT
T ss_pred HHHHH---------cCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeeccccc
Confidence 99988 3789999999 5688999999999999999999999999999 999999999999887 5566
Q ss_pred CceeeeEEeeehhhhhcC
Q 038855 243 GMESLIVVPISKAQALQR 260 (260)
Q Consensus 243 g~~~l~~~~isk~~~~qR 260 (260)
++...-..|.|.++..||
T Consensus 261 ~~vi~~~~p~~~~~~~Qr 278 (440)
T 1yks_A 261 KVAIKGPLRISASSAAQR 278 (440)
T ss_dssp EEEEEEEEECCHHHHHHH
T ss_pred ceeeccccccCHHHHHHh
Confidence 788888899999999987
No 12
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.88 E-value=1.2e-22 Score=203.05 Aligned_cols=194 Identities=14% Similarity=0.199 Sum_probs=139.6
Q ss_pred CCCcccEEEEecCC-----cCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCC
Q 038855 7 YLSRYSVIIVDEAH-----ERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKF 81 (260)
Q Consensus 7 ~L~~~~~vIlDEah-----er~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (260)
.++++++||+|||| +|....+.++..++ +
T Consensus 135 ~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~------~---------------------------------------- 168 (720)
T 2zj8_A 135 WIKDVKILVADEIHLIGSRDRGATLEVILAHML------G---------------------------------------- 168 (720)
T ss_dssp TGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHB------T----------------------------------------
T ss_pred hhhcCCEEEEECCcccCCCcccHHHHHHHHHhh------c----------------------------------------
Confidence 37899999999999 45555544444332 2
Q ss_pred CCceEEEEeccC-CHHHHHhhhCCCcEEEecCceeeeeEEEeeCCCcch-------HHHHHHHHHHHHhhcCCCCEEEEe
Q 038855 82 PPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDF-------LDATLITIFQVHLDEAPGDILVFL 153 (260)
Q Consensus 82 ~~~qlil~SATl-~~~~~~~~~~~~~~v~v~~~~~~v~~~~~~~~~~~~-------~~~~~~~l~~i~~~~~~g~iLVFl 153 (260)
+.|+|+||||+ +.+.+.+|++. +.+....+..|++..+.......+ .......+.+.+. .++++||||
T Consensus 169 -~~~ii~lSATl~n~~~~~~~l~~-~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~ 244 (720)
T 2zj8_A 169 -KAQIIGLSATIGNPEELAEWLNA-ELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIR--KKKGALIFV 244 (720)
T ss_dssp -TBEEEEEECCCSCHHHHHHHTTE-EEEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHH--TTCCEEEEC
T ss_pred -CCeEEEEcCCcCCHHHHHHHhCC-cccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHh--CCCCEEEEe
Confidence 57899999999 78899999964 456666666776655432211100 1112233333332 468999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCccC---------C---------------CCeEEEEecCCCCHHHHHHHhcccCCCCeEEE
Q 038855 154 TGQEEIESVERLVQERLLQLPEA---------S---------------RKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVI 209 (260)
Q Consensus 154 ~~~~~ve~v~~~L~~~l~~~~~~---------~---------------~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVl 209 (260)
+++++++.+++.|.+.+...... . -+..+.++||+|++++|..+++.|++|.++||
T Consensus 245 ~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vl 324 (720)
T 2zj8_A 245 NMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAV 324 (720)
T ss_dssp SCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEE
T ss_pred cCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEE
Confidence 99999999999998764320000 0 01248999999999999999999999999999
Q ss_pred EecCcccccCCCCCceEEEeCCCccceeeecCCCceeeeEEeeehhhhhcC
Q 038855 210 LATNIAETSVTIPGIKYVIDPGFVKARSYDPVKGMESLIVVPISKAQALQR 260 (260)
Q Consensus 210 vaTdiae~gidIp~V~~VId~g~~~~~~yd~~~g~~~l~~~~isk~~~~qR 260 (260)
|||+++++|||+|++++||+.+ ..|| ..| ..|+|.++..||
T Consensus 325 vaT~~l~~Gvdip~~~~VI~~~----~~yd-~~g-----~~~~s~~~~~Qr 365 (720)
T 2zj8_A 325 VATPTLSAGINTPAFRVIIRDI----WRYS-DFG-----MERIPIIEVHQM 365 (720)
T ss_dssp EECSTTGGGCCCCBSEEEECCS----EECC-SSS-----CEECCHHHHHHH
T ss_pred EECcHhhccCCCCceEEEEcCC----eeec-CCC-----CccCCHHHHHHH
Confidence 9999999999999999999965 4566 233 257888888886
No 13
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.88 E-value=4.2e-23 Score=189.84 Aligned_cols=184 Identities=11% Similarity=0.232 Sum_probs=135.7
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCce
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLK 85 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 85 (260)
..+.++++||+||||. ..+.++...+.+.+...++ ..|
T Consensus 175 ~~~~~~~~vViDEah~-~~~~~~~~~~~~i~~~~~~-----------------------------------------~~~ 212 (410)
T 2j0s_A 175 LRTRAIKMLVLDEADE-MLNKGFKEQIYDVYRYLPP-----------------------------------------ATQ 212 (410)
T ss_dssp SCCTTCCEEEEETHHH-HTSTTTHHHHHHHHTTSCT-----------------------------------------TCE
T ss_pred ccHhheeEEEEccHHH-HHhhhhHHHHHHHHHhCcc-----------------------------------------Cce
Confidence 3567899999999995 3344433333222222222 678
Q ss_pred EEEEeccCCHHH---HHhhhCCCcEEEecCcee---eeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHH
Q 038855 86 LIIMSASLDARG---FSEYFGCAKAVHVQGRQF---PVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEI 159 (260)
Q Consensus 86 lil~SATl~~~~---~~~~~~~~~~v~v~~~~~---~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~v 159 (260)
+++||||+.... +..|++++..+.+..... .+.+.+....... .+...+..+......+++||||++++.+
T Consensus 213 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~k~~~l~~~~~~~~~~~~lVf~~~~~~~ 289 (410)
T 2j0s_A 213 VVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREE---WKFDTLCDLYDTLTITQAVIFCNTKRKV 289 (410)
T ss_dssp EEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTT---HHHHHHHHHHHHHTSSEEEEECSSHHHH
T ss_pred EEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHH---hHHHHHHHHHHhcCCCcEEEEEcCHHHH
Confidence 999999996543 235666665555443322 2455565544443 2344455555555678999999999999
Q ss_pred HHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccce-ee
Q 038855 160 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKAR-SY 238 (260)
Q Consensus 160 e~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~-~y 238 (260)
+.+++.|.+ .++.+..+||++++++|.++++.|+.|..+|||||+++++|+|+|++++||++++|... .|
T Consensus 290 ~~l~~~L~~---------~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~ 360 (410)
T 2j0s_A 290 DWLTEKMRE---------ANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELY 360 (410)
T ss_dssp HHHHHHHHH---------TTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHH
T ss_pred HHHHHHHHh---------CCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHH
Confidence 999999988 48899999999999999999999999999999999999999999999999999998763 46
Q ss_pred ecCCC
Q 038855 239 DPVKG 243 (260)
Q Consensus 239 d~~~g 243 (260)
-.+.|
T Consensus 361 ~Qr~G 365 (410)
T 2j0s_A 361 IHRIG 365 (410)
T ss_dssp HHHHT
T ss_pred HHhcc
Confidence 55444
No 14
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.88 E-value=1.2e-22 Score=202.27 Aligned_cols=185 Identities=16% Similarity=0.192 Sum_probs=136.4
Q ss_pred ccCCCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCC
Q 038855 3 LLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFP 82 (260)
Q Consensus 3 ~~d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (260)
+.++.++++++|||||||++....+..+..+..... ++
T Consensus 270 ~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l~-~~----------------------------------------- 307 (618)
T 2whx_A 270 LSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVE-MG----------------------------------------- 307 (618)
T ss_dssp HHCSSCCCCSEEEEESTTCCSHHHHHHHHHHHHHHH-HT-----------------------------------------
T ss_pred hccccccCCeEEEEECCCCCCccHHHHHHHHHHHhc-cc-----------------------------------------
Confidence 346779999999999999875555545555544332 23
Q ss_pred CceEEEEeccCCHHHHHhhhC-CCcEEEecCceeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHH
Q 038855 83 PLKLIIMSASLDARGFSEYFG-CAKAVHVQGRQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIES 161 (260)
Q Consensus 83 ~~qlil~SATl~~~~~~~~~~-~~~~v~v~~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve~ 161 (260)
..|+++||||++.. ...++. ++..+.+... + +...+ .. ++..... .++++||||+++++++.
T Consensus 308 ~~q~il~SAT~~~~-~~~~~~~~~~~~~v~~~-~---------~~~~~-~~----ll~~l~~-~~~~~LVF~~s~~~a~~ 370 (618)
T 2whx_A 308 EAAAIFMTATPPGS-TDPFPQSNSPIEDIERE-I---------PERSW-NT----GFDWITD-YQGKTVWFVPSIKAGND 370 (618)
T ss_dssp SCEEEEECSSCTTC-CCSSCCCSSCEEEEECC-C---------CSSCC-SS----SCHHHHH-CCSCEEEECSSHHHHHH
T ss_pred CccEEEEECCCchh-hhhhhccCCceeeeccc-C---------CHHHH-HH----HHHHHHh-CCCCEEEEECChhHHHH
Confidence 67999999999533 223332 2333333321 1 11111 11 1111222 37899999999999999
Q ss_pred HHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccceee--e
Q 038855 162 VERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSY--D 239 (260)
Q Consensus 162 v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~~y--d 239 (260)
+++.|++ .++.+..+||+ +|.++++.|++|..+||||||++++||||| |++|||+|++..+.+ +
T Consensus 371 l~~~L~~---------~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~ 436 (618)
T 2whx_A 371 IANCLRK---------SGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTD 436 (618)
T ss_dssp HHHHHHH---------TTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECS
T ss_pred HHHHHHH---------cCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceeccc
Confidence 9999998 38889999984 788899999999999999999999999997 999999999888776 4
Q ss_pred cCCCceeeeEEeeehhhhhcC
Q 038855 240 PVKGMESLIVVPISKAQALQR 260 (260)
Q Consensus 240 ~~~g~~~l~~~~isk~~~~qR 260 (260)
...++......|+|.++..||
T Consensus 437 ~~~~~~i~~d~P~s~~~yiQR 457 (618)
T 2whx_A 437 GPERVILAGPIPVTPASAAQR 457 (618)
T ss_dssp SSCEEEEEEEEECCHHHHHHH
T ss_pred CCCceEEcccccCCHHHHHHh
Confidence 455678888999999999997
No 15
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.87 E-value=1.9e-21 Score=176.67 Aligned_cols=181 Identities=13% Similarity=0.229 Sum_probs=134.1
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCce
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLK 85 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 85 (260)
..+.++++||+||||...-..++...+.+.+...+. ..|
T Consensus 148 ~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~ 186 (391)
T 1xti_A 148 LNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH-----------------------------------------EKQ 186 (391)
T ss_dssp SCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCS-----------------------------------------SSE
T ss_pred ccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCC-----------------------------------------Cce
Confidence 357899999999999643323433333322222222 678
Q ss_pred EEEEeccCCH--H-HHHhhhCCCcEEEecCce----eeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHH
Q 038855 86 LIIMSASLDA--R-GFSEYFGCAKAVHVQGRQ----FPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEE 158 (260)
Q Consensus 86 lil~SATl~~--~-~~~~~~~~~~~v~v~~~~----~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ 158 (260)
+++||||+.. . .+..+++.+..+.+.... ..+..++........ ...+..+......+++|||+++++.
T Consensus 187 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~~~~~~lvf~~~~~~ 262 (391)
T 1xti_A 187 VMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEK----NRKLFDLLDVLEFNQVVIFVKSVQR 262 (391)
T ss_dssp EEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGH----HHHHHHHHHHSCCSEEEEECSCHHH
T ss_pred EEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhH----HHHHHHHHHhcCCCcEEEEeCcHHH
Confidence 9999999943 3 344677766655554332 234555655544443 3334445555567899999999999
Q ss_pred HHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccce-e
Q 038855 159 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKAR-S 237 (260)
Q Consensus 159 ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~-~ 237 (260)
++.+++.|.+ .++.+..+||++++++|.++++.|+.|..+|||||+++++|+|+|++++||+++.|... .
T Consensus 263 ~~~l~~~L~~---------~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~ 333 (391)
T 1xti_A 263 CIALAQLLVE---------QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDT 333 (391)
T ss_dssp HHHHHHHHHH---------TTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHH
T ss_pred HHHHHHHHHh---------CCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHH
Confidence 9999999988 48899999999999999999999999999999999999999999999999999999763 4
Q ss_pred eec
Q 038855 238 YDP 240 (260)
Q Consensus 238 yd~ 240 (260)
|-.
T Consensus 334 ~~Q 336 (391)
T 1xti_A 334 YLH 336 (391)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 16
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.87 E-value=2.9e-23 Score=196.56 Aligned_cols=150 Identities=13% Similarity=0.213 Sum_probs=21.1
Q ss_pred CceEEEEeccCCHH--HHH-hhhCCCcEEEecCcee---eeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCH
Q 038855 83 PLKLIIMSASLDAR--GFS-EYFGCAKAVHVQGRQF---PVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQ 156 (260)
Q Consensus 83 ~~qlil~SATl~~~--~~~-~~~~~~~~v~v~~~~~---~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~ 156 (260)
..|+++||||+... .+. .+++++..+.+..... .+++.+....... .+...+..++.....+++||||+++
T Consensus 267 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~lvF~~s~ 343 (479)
T 3fmp_B 267 NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRD---EKFQALCNLYGAITIAQAMIFCHTR 343 (479)
T ss_dssp TSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC------------------------------------------------
T ss_pred cceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHH---HHHHHHHHHHhhccCCceEEEeCcH
Confidence 68999999999654 333 5777776676655432 2334444333222 2444555666656678999999999
Q ss_pred HHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccce
Q 038855 157 EEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKAR 236 (260)
Q Consensus 157 ~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~ 236 (260)
..++.+++.|... ++.+..+||++++++|.++++.|++|..+|||||+++++|+|+|+|++||++++|..+
T Consensus 344 ~~~~~l~~~L~~~---------~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~ 414 (479)
T 3fmp_B 344 KTASWLAAELSKE---------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDK 414 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhC---------CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCC
Confidence 9999999999873 7889999999999999999999999999999999999999999999999999999643
Q ss_pred -------eeecCCCc
Q 038855 237 -------SYDPVKGM 244 (260)
Q Consensus 237 -------~yd~~~g~ 244 (260)
.|-++.|.
T Consensus 415 ~~~~s~~~~~Qr~GR 429 (479)
T 3fmp_B 415 DGNPDNETYLHRIGR 429 (479)
T ss_dssp ---------------
T ss_pred ccCCCHHHHHHHhcc
Confidence 56665553
No 17
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.87 E-value=1.1e-21 Score=175.56 Aligned_cols=144 Identities=15% Similarity=0.195 Sum_probs=113.9
Q ss_pred CceEEEEeccCCHHH---HHhhhCCCcEEEecCceeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHH
Q 038855 83 PLKLIIMSASLDARG---FSEYFGCAKAVHVQGRQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEI 159 (260)
Q Consensus 83 ~~qlil~SATl~~~~---~~~~~~~~~~v~v~~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~v 159 (260)
..++++||||+.... +..|+++...+..... ..++..+......+.. ..+..+.. ...+++||||++++.+
T Consensus 178 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~l~~~l~-~~~~~~lvf~~~~~~~ 251 (367)
T 1hv8_A 178 DKRILLFSATMPREILNLAKKYMGDYSFIKAKIN-ANIEQSYVEVNENERF----EALCRLLK-NKEFYGLVFCKTKRDT 251 (367)
T ss_dssp SCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSS-SSSEEEEEECCGGGHH----HHHHHHHC-STTCCEEEECSSHHHH
T ss_pred CceEEEEeeccCHHHHHHHHHHcCCCeEEEecCC-CCceEEEEEeChHHHH----HHHHHHHh-cCCCcEEEEECCHHHH
Confidence 678999999996543 3457776655554332 3566666665555543 33444443 4578999999999999
Q ss_pred HHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccce-ee
Q 038855 160 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKAR-SY 238 (260)
Q Consensus 160 e~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~-~y 238 (260)
+.+++.|.+ .++.+..+||++++++|.++++.|++|..+|||||+++++|+|+|++++||+++.|... .|
T Consensus 252 ~~l~~~L~~---------~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~ 322 (367)
T 1hv8_A 252 KELASMLRD---------IGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESY 322 (367)
T ss_dssp HHHHHHHHH---------TTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHH
T ss_pred HHHHHHHHh---------cCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHh
Confidence 999999988 38899999999999999999999999999999999999999999999999999998753 45
Q ss_pred ecC
Q 038855 239 DPV 241 (260)
Q Consensus 239 d~~ 241 (260)
-.+
T Consensus 323 ~Q~ 325 (367)
T 1hv8_A 323 MHR 325 (367)
T ss_dssp HHH
T ss_pred hhc
Confidence 443
No 18
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.86 E-value=3.1e-21 Score=176.51 Aligned_cols=180 Identities=14% Similarity=0.234 Sum_probs=131.5
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCce
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLK 85 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 85 (260)
..+.++++||+||||. ....++ ...+..+....+ +..+
T Consensus 159 ~~~~~~~~vIiDEaH~-~~~~~~-~~~~~~i~~~~~----------------------------------------~~~~ 196 (400)
T 1s2m_A 159 ADLSDCSLFIMDEADK-MLSRDF-KTIIEQILSFLP----------------------------------------PTHQ 196 (400)
T ss_dssp SCCTTCCEEEEESHHH-HSSHHH-HHHHHHHHTTSC----------------------------------------SSCE
T ss_pred cccccCCEEEEeCchH-hhhhch-HHHHHHHHHhCC----------------------------------------cCce
Confidence 4578899999999994 333332 233343333222 1678
Q ss_pred EEEEeccCCHH---HHHhhhCCCcEEEecCce--eeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHH
Q 038855 86 LIIMSASLDAR---GFSEYFGCAKAVHVQGRQ--FPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIE 160 (260)
Q Consensus 86 lil~SATl~~~---~~~~~~~~~~~v~v~~~~--~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve 160 (260)
+++||||+... .+..+++.+..+.+.... ..+..++....... +...+..+......+++||||++++.++
T Consensus 197 ~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----k~~~l~~~~~~~~~~~~lVf~~~~~~~~ 272 (400)
T 1s2m_A 197 SLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQ----KLHCLNTLFSKLQINQAIIFCNSTNRVE 272 (400)
T ss_dssp EEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGG----HHHHHHHHHHHSCCSEEEEECSSHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechhh----HHHHHHHHHhhcCCCcEEEEEecHHHHH
Confidence 99999999643 244566655444333221 22455555544443 3334445555556789999999999999
Q ss_pred HHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccce-eee
Q 038855 161 SVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKAR-SYD 239 (260)
Q Consensus 161 ~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~-~yd 239 (260)
.+++.|.+. ++.+..+||++++++|.++++.|+.|..+|||||+++++|+|+|++++||++++|... .|-
T Consensus 273 ~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~ 343 (400)
T 1s2m_A 273 LLAKKITDL---------GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYL 343 (400)
T ss_dssp HHHHHHHHH---------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHH
T ss_pred HHHHHHHhc---------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHH
Confidence 999999885 7889999999999999999999999999999999999999999999999999998763 454
Q ss_pred c
Q 038855 240 P 240 (260)
Q Consensus 240 ~ 240 (260)
.
T Consensus 344 Q 344 (400)
T 1s2m_A 344 H 344 (400)
T ss_dssp H
T ss_pred H
Confidence 3
No 19
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=179.19 Aligned_cols=148 Identities=14% Similarity=0.169 Sum_probs=112.0
Q ss_pred CceEEEEeccCCHH--HH-HhhhCCCcEEEecCce---eeeeEEEeeCCCcchHHHHHHHHHHHHhhc-CCCCEEEEeCC
Q 038855 83 PLKLIIMSASLDAR--GF-SEYFGCAKAVHVQGRQ---FPVEILYTLYPEPDFLDATLITIFQVHLDE-APGDILVFLTG 155 (260)
Q Consensus 83 ~~qlil~SATl~~~--~~-~~~~~~~~~v~v~~~~---~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~-~~g~iLVFl~~ 155 (260)
..++++||||+... .+ ..+++++..+.+.... ..+...+......+ ....+..+.... ..+++|||+++
T Consensus 210 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~l~~~l~~~~~~~~~lVf~~~ 285 (417)
T 2i4i_A 210 VRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESD----KRSFLLDLLNATGKDSLTLVFVET 285 (417)
T ss_dssp TBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECCGGG----HHHHHHHHHHTCCTTCEEEEECSS
T ss_pred CcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEeccHh----HHHHHHHHHHhcCCCCeEEEEECC
Confidence 57899999999543 33 3566665555443321 12445555544444 233344444444 46789999999
Q ss_pred HHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc
Q 038855 156 QEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA 235 (260)
Q Consensus 156 ~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~ 235 (260)
++.++.+++.|.+ .++.+..+||++++++|.++++.|+.|..+|||||+++++|+|+|++++||++++|..
T Consensus 286 ~~~~~~l~~~L~~---------~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s 356 (417)
T 2i4i_A 286 KKGADSLEDFLYH---------EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSD 356 (417)
T ss_dssp HHHHHHHHHHHHH---------TTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSS
T ss_pred HHHHHHHHHHHHH---------CCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCC
Confidence 9999999999988 4889999999999999999999999999999999999999999999999999999876
Q ss_pred -eeeecCCC
Q 038855 236 -RSYDPVKG 243 (260)
Q Consensus 236 -~~yd~~~g 243 (260)
..|-.+.|
T Consensus 357 ~~~~~Qr~G 365 (417)
T 2i4i_A 357 IEEYVHRIG 365 (417)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhcC
Confidence 34555443
No 20
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.86 E-value=7.7e-22 Score=198.38 Aligned_cols=186 Identities=15% Similarity=0.157 Sum_probs=136.3
Q ss_pred ccCCCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCC
Q 038855 3 LLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFP 82 (260)
Q Consensus 3 ~~d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (260)
+.++.++++++|||||||++....+..+++++.+.. +.
T Consensus 325 ~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~-~~----------------------------------------- 362 (673)
T 2wv9_A 325 MSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVE-AG----------------------------------------- 362 (673)
T ss_dssp HSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHH-TT-----------------------------------------
T ss_pred hcccccccceEEEEeCCcccCccHHHHHHHHHHhcc-cc-----------------------------------------
Confidence 345689999999999999876666667777766542 12
Q ss_pred CceEEEEeccCCHHHHHhhhCCCcEEEecCceeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHH
Q 038855 83 PLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESV 162 (260)
Q Consensus 83 ~~qlil~SATl~~~~~~~~~~~~~~v~v~~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v 162 (260)
..|+++||||+..+ +.++.. ...|+.......+.... ...+. ... ...+++|||||++++++.+
T Consensus 363 ~~~vl~~SAT~~~~-i~~~~~---------~~~~i~~v~~~~~~~~~-~~~l~----~l~-~~~~~~lVF~~s~~~~e~l 426 (673)
T 2wv9_A 363 EAAAIFMTATPPGT-SDPFPD---------TNSPVHDVSSEIPDRAW-SSGFE----WIT-DYAGKTVWFVASVKMSNEI 426 (673)
T ss_dssp SCEEEEECSSCTTC-CCSSCC---------CSSCEEEEECCCCSSCC-SSCCH----HHH-SCCSCEEEECSSHHHHHHH
T ss_pred CCcEEEEcCCCChh-hhhhcc---------cCCceEEEeeecCHHHH-HHHHH----HHH-hCCCCEEEEECCHHHHHHH
Confidence 57899999999532 111211 11222222111111111 11111 111 2478999999999999999
Q ss_pred HHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCcccee--eec
Q 038855 163 ERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARS--YDP 240 (260)
Q Consensus 163 ~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~~--yd~ 240 (260)
++.|++ .++.+..+|| ++|.++++.|++|..+|||||+++++|||+| +++|||+|.+..+. ||.
T Consensus 427 a~~L~~---------~g~~v~~lHg----~eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da 492 (673)
T 2wv9_A 427 AQCLQR---------AGKRVIQLNR----KSYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEG 492 (673)
T ss_dssp HHHHHT---------TTCCEEEECS----SSHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECST
T ss_pred HHHHHh---------CCCeEEEeCh----HHHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecc
Confidence 999987 3789999999 3788999999999999999999999999999 99999999877653 677
Q ss_pred CCCceeeeEEeeehhhhhcC
Q 038855 241 VKGMESLIVVPISKAQALQR 260 (260)
Q Consensus 241 ~~g~~~l~~~~isk~~~~qR 260 (260)
..++..+-..|+|.++..||
T Consensus 493 ~~r~~ll~d~P~s~~~y~Qr 512 (673)
T 2wv9_A 493 EGRVILSVPSAITSASAAQR 512 (673)
T ss_dssp TCEEEECCSEECCHHHHHHH
T ss_pred cccceecccCCCCHHHHHHH
Confidence 66777777889999999997
No 21
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.86 E-value=3.1e-21 Score=185.84 Aligned_cols=155 Identities=10% Similarity=0.187 Sum_probs=113.7
Q ss_pred CceEEEEeccCCH--HHHHh-hhCCCcEEEecCc-------eeeeeEEEeeCCC-cchHHHHHHHHHHHHhh-cCCCCEE
Q 038855 83 PLKLIIMSASLDA--RGFSE-YFGCAKAVHVQGR-------QFPVEILYTLYPE-PDFLDATLITIFQVHLD-EAPGDIL 150 (260)
Q Consensus 83 ~~qlil~SATl~~--~~~~~-~~~~~~~v~v~~~-------~~~v~~~~~~~~~-~~~~~~~~~~l~~i~~~-~~~g~iL 150 (260)
..|+++||||+.. ..+.. +++.+..+.+... ...+...+..... .......+..+...... ...+++|
T Consensus 264 ~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 343 (563)
T 3i5x_A 264 NIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAI 343 (563)
T ss_dssp CCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEE
T ss_pred CceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEE
Confidence 6799999999953 44443 5555444443211 1123333333322 23333344444444333 4577999
Q ss_pred EEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeC
Q 038855 151 VFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDP 230 (260)
Q Consensus 151 VFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~ 230 (260)
|||+++..++.+++.|.+.+. .++.+..+||++++++|.++++.|+.|..+|||||+++++|||+|+|++||++
T Consensus 344 VF~~s~~~~~~l~~~L~~~~~------~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~ 417 (563)
T 3i5x_A 344 IFAPTVKFTSFLCSILKNEFK------KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQI 417 (563)
T ss_dssp EECSCHHHHHHHHHHHHHHHT------TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEE
T ss_pred EEcCcHHHHHHHHHHHHHhcc------CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEE
Confidence 999999999999999998653 37889999999999999999999999999999999999999999999999999
Q ss_pred CCccc-eeeecCCC
Q 038855 231 GFVKA-RSYDPVKG 243 (260)
Q Consensus 231 g~~~~-~~yd~~~g 243 (260)
++|.. ..|-++.|
T Consensus 418 ~~p~s~~~y~Qr~G 431 (563)
T 3i5x_A 418 GVPSELANYIHRIG 431 (563)
T ss_dssp SCCSSTTHHHHHHT
T ss_pred CCCCchhhhhhhcC
Confidence 99986 35665444
No 22
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.85 E-value=8.2e-21 Score=187.89 Aligned_cols=152 Identities=16% Similarity=0.189 Sum_probs=114.4
Q ss_pred CceEEEEeccCCHH---HHHhhhCCCcEEEecCceeeeeEEEeeCCCcchHHHHHHHHHHHHhhc-CCCCEEEEeCCHHH
Q 038855 83 PLKLIIMSASLDAR---GFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDFLDATLITIFQVHLDE-APGDILVFLTGQEE 158 (260)
Q Consensus 83 ~~qlil~SATl~~~---~~~~~~~~~~~v~v~~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~-~~g~iLVFl~~~~~ 158 (260)
..++++||||++.. .+.++++......+..........|............+..+..+.... ..+++||||+++..
T Consensus 200 ~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~ 279 (591)
T 2v1x_A 200 NASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKD 279 (591)
T ss_dssp TSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHH
T ss_pred CCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHH
Confidence 57899999999764 345666654333333222222233333223333344555566665533 56789999999999
Q ss_pred HHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccce-e
Q 038855 159 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKAR-S 237 (260)
Q Consensus 159 ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~-~ 237 (260)
++.+++.|++ .++.+..+||+|++++|.++++.|+.|..+|||||+++++|||+|+|++||++++|+.. .
T Consensus 280 ~e~la~~L~~---------~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~ 350 (591)
T 2v1x_A 280 SEQVTVSLQN---------LGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMEN 350 (591)
T ss_dssp HHHHHHHHHH---------TTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHH
T ss_pred HHHHHHHHHH---------CCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHH
Confidence 9999999988 48899999999999999999999999999999999999999999999999999999873 4
Q ss_pred eecCCC
Q 038855 238 YDPVKG 243 (260)
Q Consensus 238 yd~~~g 243 (260)
|-.+.|
T Consensus 351 y~Qr~G 356 (591)
T 2v1x_A 351 YYQESG 356 (591)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 655433
No 23
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.85 E-value=2.4e-21 Score=194.87 Aligned_cols=98 Identities=20% Similarity=0.219 Sum_probs=87.0
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCc
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGI 224 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V 224 (260)
.++++|||++++++++.+++.|++ .++.+..+||++++++ ++++.++||||||++||||||| |
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~---------~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V 457 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSG---------LGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-F 457 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHT---------TTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-B
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHh---------CCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-C
Confidence 578999999999999999999987 4889999999999885 3456679999999999999997 9
Q ss_pred eEEEeCCCcccee----eecCCCceeeeEEeeehhhhhcC
Q 038855 225 KYVIDPGFVKARS----YDPVKGMESLIVVPISKAQALQR 260 (260)
Q Consensus 225 ~~VId~g~~~~~~----yd~~~g~~~l~~~~isk~~~~qR 260 (260)
++|||+|+.+..+ |||..|+..+ ..|+|.++..||
T Consensus 458 ~~VI~~Gl~~~~ViNyDydP~~gl~~~-~~P~s~~syiQR 496 (666)
T 3o8b_A 458 DSVIDCNTCVTQTVDFSLDPTFTIETT-TVPQDAVSRSQR 496 (666)
T ss_dssp SEEEECCEEEEEEEECCCSSSCEEEEE-EEECBHHHHHHH
T ss_pred cEEEecCcccccccccccccccccccc-cCcCCHHHHHHH
Confidence 9999999988654 7788888775 789999999997
No 24
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.85 E-value=5.9e-21 Score=186.08 Aligned_cols=155 Identities=10% Similarity=0.184 Sum_probs=114.3
Q ss_pred CceEEEEeccCCH--HHHH-hhhCCCcEEEecCc-------eeeeeEEEeeCCC-cchHHHHHHHHHHHHhh-cCCCCEE
Q 038855 83 PLKLIIMSASLDA--RGFS-EYFGCAKAVHVQGR-------QFPVEILYTLYPE-PDFLDATLITIFQVHLD-EAPGDIL 150 (260)
Q Consensus 83 ~~qlil~SATl~~--~~~~-~~~~~~~~v~v~~~-------~~~v~~~~~~~~~-~~~~~~~~~~l~~i~~~-~~~g~iL 150 (260)
..|+++||||+.. ..+. .+++.+..+.+... ...+...+..... .......+..+...... ...+++|
T Consensus 213 ~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 292 (579)
T 3sqw_A 213 NIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAI 292 (579)
T ss_dssp CCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEE
T ss_pred CceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEE
Confidence 6799999999953 3333 45555554444221 1123343433332 22333344444444433 4567999
Q ss_pred EEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeC
Q 038855 151 VFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDP 230 (260)
Q Consensus 151 VFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~ 230 (260)
|||+++..++.+++.|.+.+. .++.+..+||++++++|.++++.|+.|..+|||||+++++|||+|+|++||++
T Consensus 293 VF~~t~~~~~~l~~~L~~~~~------~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~ 366 (579)
T 3sqw_A 293 IFAPTVKFTSFLCSILKNEFK------KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQI 366 (579)
T ss_dssp EECSSHHHHHHHHHHHHHHHT------TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEE
T ss_pred EECCcHHHHHHHHHHHHHhhc------CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEc
Confidence 999999999999999998653 37889999999999999999999999999999999999999999999999999
Q ss_pred CCccce-eeecCCC
Q 038855 231 GFVKAR-SYDPVKG 243 (260)
Q Consensus 231 g~~~~~-~yd~~~g 243 (260)
++|... .|-++.|
T Consensus 367 ~~p~s~~~y~Qr~G 380 (579)
T 3sqw_A 367 GVPSELANYIHRIG 380 (579)
T ss_dssp SCCSSTTHHHHHHT
T ss_pred CCCCCHHHhhhhcc
Confidence 999863 5665444
No 25
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.84 E-value=4.6e-22 Score=180.48 Aligned_cols=149 Identities=12% Similarity=0.300 Sum_probs=20.7
Q ss_pred CceEEEEeccCCHH---HHHhhhCCCcEEEecCceee---eeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCH
Q 038855 83 PLKLIIMSASLDAR---GFSEYFGCAKAVHVQGRQFP---VEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQ 156 (260)
Q Consensus 83 ~~qlil~SATl~~~---~~~~~~~~~~~v~v~~~~~~---v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~ 156 (260)
..++++||||+... .+..++..+..+.+.....+ +...+......++ ....+..+......+++|||++++
T Consensus 193 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~lVf~~~~ 269 (394)
T 1fuu_A 193 TTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEY---KYECLTDLYDSISVTQAVIFCNTR 269 (394)
T ss_dssp TCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------------------------------
T ss_pred CceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhh---HHHHHHHHHhcCCCCcEEEEECCH
Confidence 67899999999653 34457776655555443322 2333333322221 233344444445578999999999
Q ss_pred HHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc-
Q 038855 157 EEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA- 235 (260)
Q Consensus 157 ~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~- 235 (260)
+.++.+++.|++ .++.+..+||++++++|.++++.|+.|..+|||||+++++|+|+|++++||+++.|..
T Consensus 270 ~~~~~l~~~L~~---------~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~ 340 (394)
T 1fuu_A 270 RKVEELTTKLRN---------DKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANK 340 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHH---------cCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCH
Confidence 999999999987 3788999999999999999999999999999999999999999999999999999876
Q ss_pred eeeecCCC
Q 038855 236 RSYDPVKG 243 (260)
Q Consensus 236 ~~yd~~~g 243 (260)
..|-.+.|
T Consensus 341 ~~~~Qr~G 348 (394)
T 1fuu_A 341 ENYIHRIG 348 (394)
T ss_dssp --------
T ss_pred HHHHHHcC
Confidence 35666555
No 26
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.84 E-value=2.4e-21 Score=203.92 Aligned_cols=201 Identities=15% Similarity=0.152 Sum_probs=135.9
Q ss_pred CCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCceEE
Q 038855 8 LSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLKLI 87 (260)
Q Consensus 8 L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qli 87 (260)
++++++||||||| +..+.++-..+-..+...++ ..|++
T Consensus 288 l~~l~lVVIDEaH-~l~d~~rg~~~e~ii~~l~~-----------------------------------------~~qvl 325 (1108)
T 3l9o_A 288 MREVAWVIFDEVH-YMRDKERGVVWEETIILLPD-----------------------------------------KVRYV 325 (1108)
T ss_dssp HHHEEEEEEETGG-GTTSHHHHHHHHHHHHHSCT-----------------------------------------TSEEE
T ss_pred cccCCEEEEhhhh-hccccchHHHHHHHHHhcCC-----------------------------------------CceEE
Confidence 6789999999999 44444433333333333333 78999
Q ss_pred EEeccC-CHHHHHhhhC----C-CcEEEecCceeeeeEEEeeCCCc----------ch-----H----------------
Q 038855 88 IMSASL-DARGFSEYFG----C-AKAVHVQGRQFPVEILYTLYPEP----------DF-----L---------------- 130 (260)
Q Consensus 88 l~SATl-~~~~~~~~~~----~-~~~v~v~~~~~~v~~~~~~~~~~----------~~-----~---------------- 130 (260)
+||||+ +...+..|++ . ..++....+..|+++++...... .+ .
T Consensus 326 ~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~ 405 (1108)
T 3l9o_A 326 FLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNS 405 (1108)
T ss_dssp EEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC----------
T ss_pred EEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccc
Confidence 999998 5556666543 2 34555566667776665432210 00 0
Q ss_pred --------------------HHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccC--------------
Q 038855 131 --------------------DATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEA-------------- 176 (260)
Q Consensus 131 --------------------~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~-------------- 176 (260)
...+..++..+.....+++|||++++..|+.++..|...-...+..
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~ 485 (1108)
T 3l9o_A 406 TDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIAL 485 (1108)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTH
T ss_pred cccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhh
Confidence 2233345555556667899999999999999999886532111000
Q ss_pred ----CC------------CeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccceeeec
Q 038855 177 ----SR------------KLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYDP 240 (260)
Q Consensus 177 ----~~------------~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~~yd~ 240 (260)
.. ...+..+||+|++.+|..+++.|++|..+|||||+++++|||+|++++||++..+ ||+
T Consensus 486 l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~----~d~ 561 (1108)
T 3l9o_A 486 LPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRK----WDG 561 (1108)
T ss_dssp HHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEE----ESS
T ss_pred cchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcc----cCc
Confidence 00 0128999999999999999999999999999999999999999999999998653 333
Q ss_pred CCCceeeeEEeeehhhhhcC
Q 038855 241 VKGMESLIVVPISKAQALQR 260 (260)
Q Consensus 241 ~~g~~~l~~~~isk~~~~qR 260 (260)
. ..+|+|.++..||
T Consensus 562 ~------~~r~iS~~eyiQr 575 (1108)
T 3l9o_A 562 Q------QFRWVSGGEYIQM 575 (1108)
T ss_dssp S------CEEECCHHHHHHH
T ss_pred c------ccccCCHHHHHHh
Confidence 2 2457788887775
No 27
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.83 E-value=4.6e-20 Score=179.39 Aligned_cols=146 Identities=13% Similarity=0.224 Sum_probs=110.4
Q ss_pred CceEEEEeccCCHHH---HHhhhC-CCcEEEecCceeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHH
Q 038855 83 PLKLIIMSASLDARG---FSEYFG-CAKAVHVQGRQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEE 158 (260)
Q Consensus 83 ~~qlil~SATl~~~~---~~~~~~-~~~~v~v~~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ 158 (260)
..++++||||+.... +.++++ ..+.+.+.+...| ...|......+. ...+.........+++||||++++.
T Consensus 174 ~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-~l~~~v~~~~~~----~~~l~~~l~~~~~~~~IVf~~sr~~ 248 (523)
T 1oyw_A 174 TLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRP-NIRYMLMEKFKP----LDQLMRYVQEQRGKSGIIYCNSRAK 248 (523)
T ss_dssp TSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCT-TEEEEEEECSSH----HHHHHHHHHHTTTCCEEEECSSHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCC-ceEEEEEeCCCH----HHHHHHHHHhcCCCcEEEEeCCHHH
Confidence 578999999997643 445554 2344444433223 222332223332 3334444455566799999999999
Q ss_pred HHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccce-e
Q 038855 159 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKAR-S 237 (260)
Q Consensus 159 ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~-~ 237 (260)
++.+++.|++ .++.+..+||++++++|.++++.|+.|..+|||||+++++|||+|+|++||++++|+.. .
T Consensus 249 ~e~l~~~L~~---------~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~ 319 (523)
T 1oyw_A 249 VEDTAARLQS---------KGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIES 319 (523)
T ss_dssp HHHHHHHHHH---------TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHH
T ss_pred HHHHHHHHHH---------CCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHH
Confidence 9999999988 48899999999999999999999999999999999999999999999999999999873 4
Q ss_pred eecCC
Q 038855 238 YDPVK 242 (260)
Q Consensus 238 yd~~~ 242 (260)
|-.+.
T Consensus 320 y~Qr~ 324 (523)
T 1oyw_A 320 YYQET 324 (523)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55433
No 28
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.82 E-value=5.2e-20 Score=163.26 Aligned_cols=139 Identities=14% Similarity=0.176 Sum_probs=105.7
Q ss_pred CceEEEEeccCCHH---HHHhhhCCCcEEEecCceeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHH
Q 038855 83 PLKLIIMSASLDAR---GFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEI 159 (260)
Q Consensus 83 ~~qlil~SATl~~~---~~~~~~~~~~~v~v~~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~v 159 (260)
..++++||||+... .+..|+.+...+........++..+........ .. .........+++|||+++++.+
T Consensus 160 ~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~lvf~~~~~~~ 233 (337)
T 2z0m_A 160 RKITGLFSATIPEEIRKVVKDFITNYEEIEACIGLANVEHKFVHVKDDWR--SK----VQALRENKDKGVIVFVRTRNRV 233 (337)
T ss_dssp CSEEEEEESCCCHHHHHHHHHHSCSCEEEECSGGGGGEEEEEEECSSSSH--HH----HHHHHTCCCSSEEEECSCHHHH
T ss_pred ccEEEEEeCcCCHHHHHHHHHhcCCceeeecccccCCceEEEEEeChHHH--HH----HHHHHhCCCCcEEEEEcCHHHH
Confidence 56789999999654 455677776655544333345555555443321 11 2334456678999999999999
Q ss_pred HHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccce-ee
Q 038855 160 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKAR-SY 238 (260)
Q Consensus 160 e~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~-~y 238 (260)
+.+++.|. .+..+||++++++|.++++.|+.|..+|||||+++++|+|+|++++||+++.|... .|
T Consensus 234 ~~l~~~l~-------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~ 300 (337)
T 2z0m_A 234 AKLVRLFD-------------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTY 300 (337)
T ss_dssp HHHHTTCT-------------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHH
T ss_pred HHHHHHhh-------------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHh
Confidence 98777664 36789999999999999999999999999999999999999999999999998753 34
Q ss_pred ec
Q 038855 239 DP 240 (260)
Q Consensus 239 d~ 240 (260)
-.
T Consensus 301 ~Q 302 (337)
T 2z0m_A 301 IH 302 (337)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 29
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.82 E-value=3.8e-20 Score=186.38 Aligned_cols=185 Identities=20% Similarity=0.184 Sum_probs=126.6
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCce
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLK 85 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 85 (260)
+.+..+++||+||||++ .+.++-..+...+...+.+ ..+
T Consensus 235 ~l~~~v~lvVIDEaH~l-~d~~~g~~~~~~l~~l~~~----------------------------------------~i~ 273 (677)
T 3rc3_A 235 SVTTPYEVAVIDEIQMI-RDPARGWAWTRALLGLCAE----------------------------------------EVH 273 (677)
T ss_dssp CSSSCEEEEEECSGGGG-GCTTTHHHHHHHHHHCCEE----------------------------------------EEE
T ss_pred hhcccCCEEEEecceec-CCccchHHHHHHHHccCcc----------------------------------------ceE
Confidence 34678899999999965 5666666666666555421 689
Q ss_pred EEEEeccCC-HHHHHhhhCCCcEEEecCceeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHH
Q 038855 86 LIIMSASLD-ARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVER 164 (260)
Q Consensus 86 lil~SATl~-~~~~~~~~~~~~~v~v~~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~ 164 (260)
++++|||.+ ...+....+....+.-..+..| ..+....-. ......+| -+||++++++++.+++
T Consensus 274 il~~SAT~~~i~~l~~~~~~~~~v~~~~r~~~--l~~~~~~l~------------~l~~~~~g-~iIf~~s~~~ie~la~ 338 (677)
T 3rc3_A 274 LCGEPAAIDLVMELMYTTGEEVEVRDYKRLTP--ISVLDHALE------------SLDNLRPG-DCIVCFSKNDIYSVSR 338 (677)
T ss_dssp EEECGGGHHHHHHHHHHHTCCEEEEECCCSSC--EEECSSCCC------------SGGGCCTT-EEEECSSHHHHHHHHH
T ss_pred EEeccchHHHHHHHHHhcCCceEEEEeeecch--HHHHHHHHH------------HHHhcCCC-CEEEEcCHHHHHHHHH
Confidence 999999962 2333344443322221111111 111111100 11122334 4788999999999999
Q ss_pred HHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCC--CCeEEEEecCcccccCCCCCceEEEeCCCccceeeecCC
Q 038855 165 LVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAA--GFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYDPVK 242 (260)
Q Consensus 165 ~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~--g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~~yd~~~ 242 (260)
.|++ .++.+.++||+|++++|.++++.|++ |.++|||||+++++|||+ +|++||++|+++. .||+..
T Consensus 339 ~L~~---------~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~-~~~~~G 407 (677)
T 3rc3_A 339 QIEI---------RGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKP-SINEKG 407 (677)
T ss_dssp HHHH---------TTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC--------
T ss_pred HHHh---------cCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcccc-ccccCC
Confidence 9988 37899999999999999999999998 899999999999999999 9999999999988 899884
Q ss_pred CceeeeEEeeehhhhhcC
Q 038855 243 GMESLIVVPISKAQALQR 260 (260)
Q Consensus 243 g~~~l~~~~isk~~~~qR 260 (260)
+. ..+|+|.+++.||
T Consensus 408 ~~---~~~p~s~~~~~QR 422 (677)
T 3rc3_A 408 ER---ELEPITTSQALQI 422 (677)
T ss_dssp -------CBCCHHHHHHH
T ss_pred cc---ccccCCHHHHHHH
Confidence 34 3679999999997
No 30
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.80 E-value=6.7e-21 Score=183.65 Aligned_cols=174 Identities=13% Similarity=0.225 Sum_probs=112.3
Q ss_pred CCCcccEEEEecCCcCCcchhHHHHHHHHHHh-hccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCce
Q 038855 7 YLSRYSVIIVDEAHERTVHTDVLLGLLKKVQN-ARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLK 85 (260)
Q Consensus 7 ~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 85 (260)
.+.++++||+||+|...-..++... +..+.. .++ ..|
T Consensus 256 ~~~~~~lIIiDEaH~~~~~~~~~~~-~~~i~~~~~~-----------------------------------------~~~ 293 (508)
T 3fho_A 256 DARDIKVFVLDEADNMLDQQGLGDQ-SMRIKHLLPR-----------------------------------------NTQ 293 (508)
T ss_dssp CCTTCCEEEECCHHHHTTC--CHHH-HHHHHHHSCT-----------------------------------------TCE
T ss_pred cccCCCEEEEechhhhcccCCcHHH-HHHHHHhCCc-----------------------------------------CCe
Confidence 5789999999999964432333322 233333 233 678
Q ss_pred EEEEeccCC--HHHHHh-hhCCCcEEEecCceee---eeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHH
Q 038855 86 LIIMSASLD--ARGFSE-YFGCAKAVHVQGRQFP---VEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEI 159 (260)
Q Consensus 86 lil~SATl~--~~~~~~-~~~~~~~v~v~~~~~~---v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~v 159 (260)
+++||||+. .+.+.. +++....+.+.....+ +...+....... .....+..+......+++||||+++..+
T Consensus 294 ~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~k~~~l~~ll~~~~~~~~LVF~~s~~~a 370 (508)
T 3fho_A 294 IVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEE---HKYNVLVELYGLLTIGQSIIFCKKKDTA 370 (508)
T ss_dssp EEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CH---HHHHHHHHHHC---CCCEEEBCSSTTTT
T ss_pred EEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchH---HHHHHHHHHHHhcCCCcEEEEECCHHHH
Confidence 999999995 444444 5566555555444332 334444433322 3445556666666778999999999999
Q ss_pred HHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCcc
Q 038855 160 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVK 234 (260)
Q Consensus 160 e~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~ 234 (260)
+.+++.|.+ .++.+..+||++++++|.++++.|+.|..+|||||+++++|+|+|++++||+++.|.
T Consensus 371 ~~l~~~L~~---------~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~ 436 (508)
T 3fho_A 371 EEIARRMTA---------DGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPL 436 (508)
T ss_dssp THHHHHHTT---------TTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----C
T ss_pred HHHHHHHHh---------CCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCC
Confidence 999999876 378899999999999999999999999999999999999999999999999999884
No 31
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.80 E-value=2e-19 Score=187.53 Aligned_cols=117 Identities=15% Similarity=0.106 Sum_probs=87.5
Q ss_pred HHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHH------------------HhcCccCC------------CCeEEE
Q 038855 134 LITIFQVHLDEAPGDILVFLTGQEEIESVERLVQER------------------LLQLPEAS------------RKLVTV 183 (260)
Q Consensus 134 ~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~------------------l~~~~~~~------------~~~~~~ 183 (260)
+..+...+.....+++|||++++..|+.++..|.+. +..++... -...+.
T Consensus 324 ~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~ 403 (997)
T 4a4z_A 324 WPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIA 403 (997)
T ss_dssp HHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEE
T ss_pred HHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCee
Confidence 334556666666789999999999999999888541 00000000 012478
Q ss_pred EecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccceeeecCCCceeeeEEeeehhhhhcC
Q 038855 184 PIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYDPVKGMESLIVVPISKAQALQR 260 (260)
Q Consensus 184 ~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~~yd~~~g~~~l~~~~isk~~~~qR 260 (260)
++||+|++.+|..+++.|+.|..+|||||+++++|||+|+ ..||..+.++ ||.. ...|+|.++..||
T Consensus 404 ~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k---~dg~------~~~~~s~~~y~Qr 470 (997)
T 4a4z_A 404 VHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRK---HDGN------GLRELTPGEFTQM 470 (997)
T ss_dssp EECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEE---EETT------EEEECCHHHHHHH
T ss_pred eecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEecccc---ccCc------cCCCCCHHHHhHH
Confidence 9999999999999999999999999999999999999999 6666677655 5543 2347788877775
No 32
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.79 E-value=5.9e-19 Score=184.28 Aligned_cols=168 Identities=18% Similarity=0.224 Sum_probs=115.0
Q ss_pred CceEEEEeccC-CHHHHHhhhC-----CCcEEEecCceeeeeEEEeeCC----------Ccch-----H-----------
Q 038855 83 PLKLIIMSASL-DARGFSEYFG-----CAKAVHVQGRQFPVEILYTLYP----------EPDF-----L----------- 130 (260)
Q Consensus 83 ~~qlil~SATl-~~~~~~~~~~-----~~~~v~v~~~~~~v~~~~~~~~----------~~~~-----~----------- 130 (260)
..++++||||+ +...+.+|++ ...++....+..|+++++.... ...+ .
T Consensus 223 ~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 302 (1010)
T 2xgj_A 223 KVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIG 302 (1010)
T ss_dssp TCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC----
T ss_pred CCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhc
Confidence 68999999999 6777777764 2344555556667776655322 0000 0
Q ss_pred -------------------------HHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHHH---------------
Q 038855 131 -------------------------DATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERL--------------- 170 (260)
Q Consensus 131 -------------------------~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l--------------- 170 (260)
...+..+...+.....+++|||++++..++.+++.|...-
T Consensus 303 ~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~ 382 (1010)
T 2xgj_A 303 DDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFN 382 (1010)
T ss_dssp --------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Confidence 1122334444445556799999999999999998886510
Q ss_pred ---hcCccCCC------------CeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc
Q 038855 171 ---LQLPEASR------------KLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA 235 (260)
Q Consensus 171 ---~~~~~~~~------------~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~ 235 (260)
..+..... ...+..+||++++.+|..+++.|+.|..+|||||+++++|||+|++++||+. .
T Consensus 383 ~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~----~ 458 (1010)
T 2xgj_A 383 NAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS----V 458 (1010)
T ss_dssp HHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESC----S
T ss_pred HHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeC----C
Confidence 00000000 1238899999999999999999999999999999999999999999999994 2
Q ss_pred eeeecCCCceeeeEEeeehhhhhcC
Q 038855 236 RSYDPVKGMESLIVVPISKAQALQR 260 (260)
Q Consensus 236 ~~yd~~~g~~~l~~~~isk~~~~qR 260 (260)
..||... .+|+|.++..||
T Consensus 459 ~kfd~~~------~rp~s~~~y~Qr 477 (1010)
T 2xgj_A 459 RKWDGQQ------FRWVSGGEYIQM 477 (1010)
T ss_dssp EEECSSC------EEECCHHHHHHH
T ss_pred cccCCcC------CccCCHHHHhHh
Confidence 3455432 355666666664
No 33
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.78 E-value=2.9e-18 Score=161.82 Aligned_cols=101 Identities=15% Similarity=0.206 Sum_probs=61.3
Q ss_pred cCCCCEEEEeCCHHHHHHHHHHHHHHHhc---CccCCCCeEEEEecCCCCHHHHHHHhcccCC-CCeEEEEecCcccccC
Q 038855 144 EAPGDILVFLTGQEEIESVERLVQERLLQ---LPEASRKLVTVPIFSSLPSEQQMKVFAPAAA-GFRKVILATNIAETSV 219 (260)
Q Consensus 144 ~~~g~iLVFl~~~~~ve~v~~~L~~~l~~---~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~-g~~kVlvaTdiae~gi 219 (260)
..++++|||++++..++.+++.|.+.-.. .+....+.....+||++++++|.++++.|++ |..+|||||+++++||
T Consensus 387 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~Gl 466 (555)
T 3tbk_A 387 KPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGI 466 (555)
T ss_dssp CTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCE
T ss_pred CCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCC
Confidence 45689999999999999999999873100 0001123455666779999999999999999 9999999999999999
Q ss_pred CCCCceEEEeCCCccce-eeecCCCc
Q 038855 220 TIPGIKYVIDPGFVKAR-SYDPVKGM 244 (260)
Q Consensus 220 dIp~V~~VId~g~~~~~-~yd~~~g~ 244 (260)
|+|++++||++++|..+ .|-.+.|.
T Consensus 467 Dlp~v~~VI~~d~p~s~~~~~Qr~GR 492 (555)
T 3tbk_A 467 DIAECNLVILYEYVGNVIKMIQTRGR 492 (555)
T ss_dssp ETTSCSEEEEESCCSSCCCEECSSCC
T ss_pred ccccCCEEEEeCCCCCHHHHHHhcCc
Confidence 99999999999999884 68887775
No 34
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.78 E-value=1.4e-18 Score=171.17 Aligned_cols=95 Identities=14% Similarity=0.187 Sum_probs=54.6
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEe--------cCCCCHHHHHHHhcccCC-CCeEEEEecCcc
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPI--------FSSLPSEQQMKVFAPAAA-GFRKVILATNIA 215 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~l--------h~~l~~~~r~~v~~~~~~-g~~kVlvaTdia 215 (260)
..+++|||+++++.++.+++.|.+.- ....+.+..+ ||++++++|.++++.|+. |..+|||||+++
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~-----~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~ 471 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNP-----KLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVA 471 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCT-----TCCSCCEEC-----------------------------CCSCSEEEESS
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCC-----CccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechh
Confidence 56799999999999999999998830 0012677777 569999999999999998 999999999999
Q ss_pred cccCCCCCceEEEeCCCccc-eeeecCCCc
Q 038855 216 ETSVTIPGIKYVIDPGFVKA-RSYDPVKGM 244 (260)
Q Consensus 216 e~gidIp~V~~VId~g~~~~-~~yd~~~g~ 244 (260)
++|||+|++++||++++|.. ..|-.+.|.
T Consensus 472 ~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR 501 (696)
T 2ykg_A 472 DEGIDIAQCNLVILYEYVGNVIKMIQTRGR 501 (696)
T ss_dssp CCC---CCCSEEEEESCC--CCCC------
T ss_pred hcCCcCccCCEEEEeCCCCCHHHHHHhhcc
Confidence 99999999999999999987 457776664
No 35
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.77 E-value=1.7e-18 Score=164.06 Aligned_cols=101 Identities=13% Similarity=0.168 Sum_probs=45.4
Q ss_pred cCCCCEEEEeCCHHHHHHHHHHHHHHHh--cC-ccCCCCeEEEEecCCCCHHHHHHHhcccCC-CCeEEEEecCcccccC
Q 038855 144 EAPGDILVFLTGQEEIESVERLVQERLL--QL-PEASRKLVTVPIFSSLPSEQQMKVFAPAAA-GFRKVILATNIAETSV 219 (260)
Q Consensus 144 ~~~g~iLVFl~~~~~ve~v~~~L~~~l~--~~-~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~-g~~kVlvaTdiae~gi 219 (260)
..++++|||++++..++.+++.|.+... .. +....+.....+||++++++|.++++.|+. |..+|||||+++++||
T Consensus 388 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~Gi 467 (556)
T 4a2p_A 388 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 467 (556)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC------
T ss_pred CCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCC
Confidence 4578999999999999999999976300 00 000124456677889999999999999999 9999999999999999
Q ss_pred CCCCceEEEeCCCccce-eeecCCCc
Q 038855 220 TIPGIKYVIDPGFVKAR-SYDPVKGM 244 (260)
Q Consensus 220 dIp~V~~VId~g~~~~~-~yd~~~g~ 244 (260)
|+|++++||++++|..+ .|-.+.|.
T Consensus 468 Dip~v~~VI~~d~p~s~~~~~Qr~GR 493 (556)
T 4a2p_A 468 DIVQCNLVVLYEYSGNVTKMIQVRGR 493 (556)
T ss_dssp -----CEEEEETCCSCHHHHHHC---
T ss_pred CchhCCEEEEeCCCCCHHHHHHhcCC
Confidence 99999999999999874 57676665
No 36
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.76 E-value=2.1e-19 Score=166.55 Aligned_cols=137 Identities=17% Similarity=0.158 Sum_probs=95.1
Q ss_pred CceEEEEeccCCH-----HHHHhhhCCCcEEEecCceeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHH
Q 038855 83 PLKLIIMSASLDA-----RGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQE 157 (260)
Q Consensus 83 ~~qlil~SATl~~-----~~~~~~~~~~~~v~v~~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ 157 (260)
..|+++||||+.+ ..+..+++ ..+.........+.+.+..... ... +..+... .++++||||+++.
T Consensus 193 ~~~~i~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~---~~~----l~~~l~~-~~~~~lVF~~~~~ 263 (414)
T 3oiy_A 193 PGILVVSSATAKPRGIRPLLFRDLLN-FTVGRLVSVARNITHVRISSRS---KEK----LVELLEI-FRDGILIFAQTEE 263 (414)
T ss_dssp CCEEEESSCCSSCCSSTTHHHHHHHS-CCSSCCCCCCCSEEEEEESSCC---HHH----HHHHHHH-HCSSEEEEESSHH
T ss_pred CceEEEEecCCCcchhHHHHHHHhhc-cCcCccccccccchheeeccCH---HHH----HHHHHHH-cCCCEEEEECCHH
Confidence 6899999999522 22223333 1111111111235555555432 222 2233333 3489999999999
Q ss_pred HHHHHHHHHHHHHhcCccCCCCeEEE-EecCCCCHHHHHHHhcccCCCCeEEEEe----cCcccccCCCCC-ceEEEeCC
Q 038855 158 EIESVERLVQERLLQLPEASRKLVTV-PIFSSLPSEQQMKVFAPAAAGFRKVILA----TNIAETSVTIPG-IKYVIDPG 231 (260)
Q Consensus 158 ~ve~v~~~L~~~l~~~~~~~~~~~~~-~lh~~l~~~~r~~v~~~~~~g~~kVlva----Tdiae~gidIp~-V~~VId~g 231 (260)
.++.+++.|.+ .++.+. .+||. +|. ++.|++|..+|||| |+++++|+|+|+ |++||+++
T Consensus 264 ~~~~l~~~L~~---------~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~ 328 (414)
T 3oiy_A 264 EGKELYEYLKR---------FKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWG 328 (414)
T ss_dssp HHHHHHHHHHH---------TTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEES
T ss_pred HHHHHHHHHHH---------cCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEEC
Confidence 99999999988 388888 99984 333 99999999999999 999999999999 99999999
Q ss_pred Cc--cc-eeeecCCC
Q 038855 232 FV--KA-RSYDPVKG 243 (260)
Q Consensus 232 ~~--~~-~~yd~~~g 243 (260)
+| .. ..|-++.|
T Consensus 329 ~p~~~~~~~y~qr~G 343 (414)
T 3oiy_A 329 TPSGPDVYTYIQASG 343 (414)
T ss_dssp CCTTTCHHHHHHHHG
T ss_pred CCCCCCHHHHHHHhC
Confidence 99 43 45665444
No 37
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.75 E-value=8.7e-18 Score=153.55 Aligned_cols=84 Identities=18% Similarity=0.251 Sum_probs=75.8
Q ss_pred cCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecC--------CCCHHHHHHHhcccCCCCeEEEEecCcc
Q 038855 144 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFS--------SLPSEQQMKVFAPAAAGFRKVILATNIA 215 (260)
Q Consensus 144 ~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~--------~l~~~~r~~v~~~~~~g~~kVlvaTdia 215 (260)
..++++|||++++..++.+++.|.+ .++.+..+|| ++++++|.++++.|++|..+|||||+++
T Consensus 359 ~~~~k~lVF~~~~~~~~~l~~~L~~---------~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~ 429 (494)
T 1wp9_A 359 KQNSKIIVFTNYRETAKKIVNELVK---------DGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVG 429 (494)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHH---------TTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGG
T ss_pred CCCCeEEEEEccHHHHHHHHHHHHH---------cCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCcc
Confidence 4678999999999999999999988 3889999999 9999999999999999999999999999
Q ss_pred cccCCCCCceEEEeCCCccce
Q 038855 216 ETSVTIPGIKYVIDPGFVKAR 236 (260)
Q Consensus 216 e~gidIp~V~~VId~g~~~~~ 236 (260)
++|+|+|++++||.++.+..+
T Consensus 430 ~~Gldl~~~~~Vi~~d~~~~~ 450 (494)
T 1wp9_A 430 EEGLDVPEVDLVVFYEPVPSA 450 (494)
T ss_dssp GGGGGSTTCCEEEESSCCHHH
T ss_pred ccCCCchhCCEEEEeCCCCCH
Confidence 999999999999999988753
No 38
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.75 E-value=5.5e-19 Score=174.04 Aligned_cols=95 Identities=17% Similarity=0.262 Sum_probs=75.6
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCC--------CCHHHHHHHhcccCCCCeEEEEecCcccc
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSS--------LPSEQQMKVFAPAAAGFRKVILATNIAET 217 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~--------l~~~~r~~v~~~~~~g~~kVlvaTdiae~ 217 (260)
++++|||++++..++.+++.|.+.. .....++.+..+||+ |++++|.++++.|+.|..+|||||+++++
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~---~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~ 476 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENE---KFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEE 476 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSC---SCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCT
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCc---cccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Confidence 6899999999999999999998730 001126899999999 99999999999999999999999999999
Q ss_pred cCCCCCceEEEeCCCccce-eeecCCC
Q 038855 218 SVTIPGIKYVIDPGFVKAR-SYDPVKG 243 (260)
Q Consensus 218 gidIp~V~~VId~g~~~~~-~yd~~~g 243 (260)
|||+|+|++||++++|... .|-.+.|
T Consensus 477 GIDip~v~~VI~~d~p~s~~~~~Qr~G 503 (699)
T 4gl2_A 477 GLDIKECNIVIRYGLVTNEIAMVQARG 503 (699)
T ss_dssp TSCCCSCCCCEEESCCCCHHHHHHHHT
T ss_pred CCccccCCEEEEeCCCCCHHHHHHHcC
Confidence 9999999999999999763 4554333
No 39
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.74 E-value=3.1e-18 Score=147.92 Aligned_cols=113 Identities=18% Similarity=0.257 Sum_probs=96.9
Q ss_pred eEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHH
Q 038855 118 EILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKV 197 (260)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v 197 (260)
+..+...+... ++..+..++....++++||||+++..++.+++.|.+. ++.+.++||++++++|.++
T Consensus 7 ~~~~~~~~~~~----k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~lhg~~~~~~r~~~ 73 (212)
T 3eaq_A 7 EEEAVPAPVRG----RLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL---------GHPAQALHGDLSQGERERV 73 (212)
T ss_dssp CCEEEECCTTS----HHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHH---------TCCEEEECSSSCHHHHHHH
T ss_pred eeeEEeCCHHH----HHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHH
Confidence 44455555544 5556666666777899999999999999999999884 8899999999999999999
Q ss_pred hcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc-eeeecCCC
Q 038855 198 FAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA-RSYDPVKG 243 (260)
Q Consensus 198 ~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~-~~yd~~~g 243 (260)
++.|+.|..+|||||+++++|+|+|+|++|||+|+|.. ..|.++.|
T Consensus 74 ~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~G 120 (212)
T 3eaq_A 74 LGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSG 120 (212)
T ss_dssp HHHHHSSSCCEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHT
T ss_pred HHHHHCCCCeEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhc
Confidence 99999999999999999999999999999999999987 45666544
No 40
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.73 E-value=1.6e-17 Score=181.35 Aligned_cols=170 Identities=17% Similarity=0.234 Sum_probs=121.5
Q ss_pred CceEEEEeccC-CHHHHHhhhCCCc---EEEecC--ceeeeeEEEeeCCCcchHH---HHHHHHHHHHhh-cCCCCEEEE
Q 038855 83 PLKLIIMSASL-DARGFSEYFGCAK---AVHVQG--RQFPVEILYTLYPEPDFLD---ATLITIFQVHLD-EAPGDILVF 152 (260)
Q Consensus 83 ~~qlil~SATl-~~~~~~~~~~~~~---~v~v~~--~~~~v~~~~~~~~~~~~~~---~~~~~l~~i~~~-~~~g~iLVF 152 (260)
+.|+|+||||+ +.+.+++|++..+ +..+.. +..|+++++.......... ..-..+...... ...+++|||
T Consensus 244 ~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF 323 (1724)
T 4f92_B 244 DVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVF 323 (1724)
T ss_dssp CCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEE
T ss_pred CCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEE
Confidence 78999999999 8899999997642 333333 2345666665544433221 111122222222 346789999
Q ss_pred eCCHHHHHHHHHHHHHHHhcCccCC----------------------------CCeEEEEecCCCCHHHHHHHhcccCCC
Q 038855 153 LTGQEEIESVERLVQERLLQLPEAS----------------------------RKLVTVPIFSSLPSEQQMKVFAPAAAG 204 (260)
Q Consensus 153 l~~~~~ve~v~~~L~~~l~~~~~~~----------------------------~~~~~~~lh~~l~~~~r~~v~~~~~~g 204 (260)
|+++..++.+++.|.+.+....... -...+..+||+|++++|..+.+.|+.|
T Consensus 324 ~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G 403 (1724)
T 4f92_B 324 VHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADK 403 (1724)
T ss_dssp CSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCC
Confidence 9999999999999987653211000 023488899999999999999999999
Q ss_pred CeEEEEecCcccccCCCCCceEEEeCCCccceeeecCCCceeeeEEeeehhhhhcC
Q 038855 205 FRKVILATNIAETSVTIPGIKYVIDPGFVKARSYDPVKGMESLIVVPISKAQALQR 260 (260)
Q Consensus 205 ~~kVlvaTdiae~gidIp~V~~VId~g~~~~~~yd~~~g~~~l~~~~isk~~~~qR 260 (260)
..+||+||+.+|.||++|.+++||.. ...|||..|.. .++|.++..||
T Consensus 404 ~i~vlvaTsTLa~GVNlPa~~vVI~~----~~~~~~~~~~~----~~ls~~~~~Qm 451 (1724)
T 4f92_B 404 HIQVLVSTATLAWGVNLPAHTVIIKG----TQVYSPEKGRW----TELGALDILQM 451 (1724)
T ss_dssp CCCEEEECHHHHHHSCCCBSEEEEEC----CEEEETTTTEE----EECCHHHHHHH
T ss_pred CCeEEEEcchhHhhCCCCCceEEEeC----CEEecCcCCCc----ccCCHHHHHHh
Confidence 99999999999999999999999865 35788887742 35677766664
No 41
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.72 E-value=6.1e-18 Score=154.91 Aligned_cols=114 Identities=17% Similarity=0.245 Sum_probs=98.9
Q ss_pred eeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHH
Q 038855 117 VEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMK 196 (260)
Q Consensus 117 v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~ 196 (260)
++++|+..+..+ ++..+..++....++++||||++++.++.+++.|.+ .++.+.++||++++++|.+
T Consensus 3 v~~~~i~~~~~~----K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~---------~g~~~~~lhg~l~~~~r~~ 69 (300)
T 3i32_A 3 YEEEAVPAPVRG----RLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLR---------LGHPAQALHGDMSQGERER 69 (300)
T ss_dssp SEEEEEECCSSS----HHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHT---------TTCCEEEECSCCCTHHHHH
T ss_pred eEEEEEECCHHH----HHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHh---------CCCCEEEEeCCCCHHHHHH
Confidence 577788777766 445555666666689999999999999999999987 4889999999999999999
Q ss_pred HhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc-eeeecCCC
Q 038855 197 VFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA-RSYDPVKG 243 (260)
Q Consensus 197 v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~-~~yd~~~g 243 (260)
+++.|+.|..+||||||++++|+|||+|++|||+++|.. ..|.++.|
T Consensus 70 ~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~G 117 (300)
T 3i32_A 70 VMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSG 117 (300)
T ss_dssp HHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHT
T ss_pred HHHHhhcCCceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHcc
Confidence 999999999999999999999999999999999999987 45766544
No 42
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.70 E-value=6.3e-17 Score=163.73 Aligned_cols=100 Identities=13% Similarity=0.136 Sum_probs=50.5
Q ss_pred cCCCCEEEEeCCHHHHHHHHHHHHHHHhcCc----cCCCCeEEEEecCCCCHHHHHHHhcccCC-CCeEEEEecCccccc
Q 038855 144 EAPGDILVFLTGQEEIESVERLVQERLLQLP----EASRKLVTVPIFSSLPSEQQMKVFAPAAA-GFRKVILATNIAETS 218 (260)
Q Consensus 144 ~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~----~~~~~~~~~~lh~~l~~~~r~~v~~~~~~-g~~kVlvaTdiae~g 218 (260)
...+++|||++++..++.+++.|++.. .+. ....+.....+||++++++|.++++.|+. |..+|||||+++++|
T Consensus 629 ~~~~kvLIF~~~~~~~~~L~~~L~~~~-~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~G 707 (797)
T 4a2q_A 629 NPQTRTLLFAKTRALVSALKKCMEENP-ILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEG 707 (797)
T ss_dssp CSSCCEEEEESSHHHHHHHHHHHHTCS-TTCSCCCEEC----------------------------CCSEEEEECC----
T ss_pred CCCCeEEEEECcHHHHHHHHHHHHhCc-ccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcC
Confidence 456899999999999999999997621 000 00124566778999999999999999999 999999999999999
Q ss_pred CCCCCceEEEeCCCccce-eeecCCCc
Q 038855 219 VTIPGIKYVIDPGFVKAR-SYDPVKGM 244 (260)
Q Consensus 219 idIp~V~~VId~g~~~~~-~yd~~~g~ 244 (260)
||+|++++||+++.|..+ .|-.+.|.
T Consensus 708 IDlp~v~~VI~yd~p~s~~~~iQr~GR 734 (797)
T 4a2q_A 708 IDIVQCNLVVLYEYSGNVTKMIQVRGR 734 (797)
T ss_dssp ---CCCSEEEEESCCSCHHHHHTC---
T ss_pred CCchhCCEEEEeCCCCCHHHHHHhcCC
Confidence 999999999999999874 57776664
No 43
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.70 E-value=8.6e-17 Score=132.75 Aligned_cols=116 Identities=13% Similarity=0.305 Sum_probs=98.7
Q ss_pred eeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHH
Q 038855 117 VEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMK 196 (260)
Q Consensus 117 v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~ 196 (260)
++++|...+..+. +...+..+.....++++|||+++++.++.+++.|.+ .++.+..+||++++.+|.+
T Consensus 4 i~~~~~~~~~~~~---K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~---------~~~~~~~~~~~~~~~~r~~ 71 (165)
T 1fuk_A 4 IKQFYVNVEEEEY---KYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRN---------DKFTVSAIYSDLPQQERDT 71 (165)
T ss_dssp CEEEEEEEESGGG---HHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHH---------TTCCEEEECTTSCHHHHHH
T ss_pred cEEEEEECCcchh---HHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHH---------cCCCEEEEECCCCHHHHHH
Confidence 5667776655441 344455555556678999999999999999999988 4889999999999999999
Q ss_pred HhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc-eeeecCCCc
Q 038855 197 VFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA-RSYDPVKGM 244 (260)
Q Consensus 197 v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~-~~yd~~~g~ 244 (260)
+++.|+.|..+|||||+++++|+|+|++++||++++|.. ..|..+.|.
T Consensus 72 ~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR 120 (165)
T 1fuk_A 72 IMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGR 120 (165)
T ss_dssp HHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCS
T ss_pred HHHHHHcCCCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcc
Confidence 999999999999999999999999999999999999987 467776664
No 44
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.70 E-value=3.1e-16 Score=171.23 Aligned_cols=148 Identities=12% Similarity=0.195 Sum_probs=106.9
Q ss_pred CceEEEEeccC-CHHHHHhhhCCCc--EEEecC--ceeeeeEEEeeCCCcchHHH---HHHHHHH-HHhhcCCCCEEEEe
Q 038855 83 PLKLIIMSASL-DARGFSEYFGCAK--AVHVQG--RQFPVEILYTLYPEPDFLDA---TLITIFQ-VHLDEAPGDILVFL 153 (260)
Q Consensus 83 ~~qlil~SATl-~~~~~~~~~~~~~--~v~v~~--~~~~v~~~~~~~~~~~~~~~---~~~~l~~-i~~~~~~g~iLVFl 153 (260)
+.|+|+||||+ +++.+++|++..+ +..+.. +..|++.+........+... ....+.. +......+++|||+
T Consensus 1083 ~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~ 1162 (1724)
T 4f92_B 1083 PIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFV 1162 (1724)
T ss_dssp CCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEE
T ss_pred CceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeC
Confidence 78999999999 8999999997543 333333 33455555544444332211 1112222 22334567999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCccCC-------------------------CCeEEEEecCCCCHHHHHHHhcccCCCCeEE
Q 038855 154 TGQEEIESVERLVQERLLQLPEAS-------------------------RKLVTVPIFSSLPSEQQMKVFAPAAAGFRKV 208 (260)
Q Consensus 154 ~~~~~ve~v~~~L~~~l~~~~~~~-------------------------~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kV 208 (260)
+++..++.++..|...+....... -...+..+||+|++++|..+.+.|++|..+|
T Consensus 1163 ~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~V 1242 (1724)
T 4f92_B 1163 PSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQV 1242 (1724)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCE
T ss_pred CCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeE
Confidence 999999999988866553211100 0224889999999999999999999999999
Q ss_pred EEecCcccccCCCCCceEEEeC
Q 038855 209 ILATNIAETSVTIPGIKYVIDP 230 (260)
Q Consensus 209 lvaTdiae~gidIp~V~~VId~ 230 (260)
|+||+.+++||++|.+.+||..
T Consensus 1243 LvaT~tlA~GVnlPa~~VVI~~ 1264 (1724)
T 4f92_B 1243 VVASRSLCWGMNVAAHLVIIMD 1264 (1724)
T ss_dssp EEEEGGGSSSCCCCBSEEEEEC
T ss_pred EEEChHHHcCCCCCccEEEEec
Confidence 9999999999999999999965
No 45
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.70 E-value=5.8e-17 Score=133.75 Aligned_cols=115 Identities=18% Similarity=0.275 Sum_probs=98.3
Q ss_pred eeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHH
Q 038855 116 PVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQM 195 (260)
Q Consensus 116 ~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~ 195 (260)
.++++|...+..+ +...+..+.....++++|||++++..++.+++.|.+ .++.+..+||++++.+|.
T Consensus 9 ~i~~~~~~~~~~~----K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~---------~~~~~~~~hg~~~~~~r~ 75 (163)
T 2hjv_A 9 NIEHAVIQVREEN----KFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDD---------LGYPCDKIHGGMIQEDRF 75 (163)
T ss_dssp CEEEEEEECCGGG----HHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHH---------TTCCEEEECTTSCHHHHH
T ss_pred cceEEEEECChHH----HHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHH---------cCCcEEEEeCCCCHHHHH
Confidence 3677787776655 444555555556778999999999999999999988 388999999999999999
Q ss_pred HHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccce-eeecCCC
Q 038855 196 KVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKAR-SYDPVKG 243 (260)
Q Consensus 196 ~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~-~yd~~~g 243 (260)
++++.|+.|..+|||||+++++|+|+|++++||++++|... .|-.+.|
T Consensus 76 ~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~G 124 (163)
T 2hjv_A 76 DVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTG 124 (163)
T ss_dssp HHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTT
T ss_pred HHHHHHHcCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhcc
Confidence 99999999999999999999999999999999999999763 5665544
No 46
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.69 E-value=1.1e-17 Score=176.10 Aligned_cols=128 Identities=17% Similarity=0.163 Sum_probs=92.0
Q ss_pred CceEEEEeccCCHH-----HHHhhhCCCcEEEecCceeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHH
Q 038855 83 PLKLIIMSASLDAR-----GFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQE 157 (260)
Q Consensus 83 ~~qlil~SATl~~~-----~~~~~~~~~~~v~v~~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ 157 (260)
..|+++||||+.++ .+..+++ ..+.........+.+.+..... ... +..+... .++++||||++++
T Consensus 250 ~~q~ll~SAT~~p~~~~~~~~~~~l~-i~v~~~~~~~~~i~~~~~~~~k---~~~----L~~ll~~-~~~~~LVF~~s~~ 320 (1104)
T 4ddu_A 250 PGILVVSSATAKPRGIRPLLFRDLLN-FTVGRLVSVARNITHVRISSRS---KEK----LVELLEI-FRDGILIFAQTEE 320 (1104)
T ss_dssp CCEEEEECBSSCCCSSTTHHHHHHTC-CCCCBCCCCCCCEEEEEESCCC---HHH----HHHHHHH-HCSSEEEEESSSH
T ss_pred CceEEEEcCCCCcHHHHHHHhhccee-EEeccCCCCcCCceeEEEecCH---HHH----HHHHHHh-cCCCEEEEECcHH
Confidence 68999999995322 2223332 1111111112235566655422 222 2233333 2489999999999
Q ss_pred HHHHHHHHHHHHHhcCccCCCCeEEE-EecCCCCHHHHHHHhcccCCCCeEEEEe----cCcccccCCCCC-ceEEEeCC
Q 038855 158 EIESVERLVQERLLQLPEASRKLVTV-PIFSSLPSEQQMKVFAPAAAGFRKVILA----TNIAETSVTIPG-IKYVIDPG 231 (260)
Q Consensus 158 ~ve~v~~~L~~~l~~~~~~~~~~~~~-~lh~~l~~~~r~~v~~~~~~g~~kVlva----Tdiae~gidIp~-V~~VId~g 231 (260)
.++.+++.|.. .++.+. .+|| +|.+ ++.|+.|..+|||| |++++||||+|+ |++||++|
T Consensus 321 ~a~~l~~~L~~---------~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d 385 (1104)
T 4ddu_A 321 EGKELYEYLKR---------FKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWG 385 (1104)
T ss_dssp HHHHHHHHHHH---------TTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEES
T ss_pred HHHHHHHHHHh---------CCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEEC
Confidence 99999999988 388888 9998 2555 99999999999999 999999999999 99999999
Q ss_pred Ccc
Q 038855 232 FVK 234 (260)
Q Consensus 232 ~~~ 234 (260)
+|+
T Consensus 386 ~P~ 388 (1104)
T 4ddu_A 386 TPS 388 (1104)
T ss_dssp CCE
T ss_pred CCC
Confidence 999
No 47
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.69 E-value=1.5e-16 Score=168.06 Aligned_cols=136 Identities=14% Similarity=0.166 Sum_probs=101.0
Q ss_pred CceEEEEeccCCHHHHHhhhCCCc-EEEec---CceeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHH
Q 038855 83 PLKLIIMSASLDARGFSEYFGCAK-AVHVQ---GRQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEE 158 (260)
Q Consensus 83 ~~qlil~SATl~~~~~~~~~~~~~-~v~v~---~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ 158 (260)
..++++||||+.++.+...+.+.. ...+. ....+++.++...... .....+.... ..+++++||||+.+.
T Consensus 751 ~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~~~~~~----~i~~~il~~l--~~g~qvlvf~~~v~~ 824 (1151)
T 2eyq_A 751 NVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSM----VVREAILREI--LRGGQVYYLYNDVEN 824 (1151)
T ss_dssp TSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCBCBCEEEEEEECCHH----HHHHHHHHHH--TTTCEEEEECCCSSC
T ss_pred CCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCCccccEEEEecCCHH----HHHHHHHHHH--hcCCeEEEEECCHHH
Confidence 578999999997666654443322 22221 2234566655543321 1222222222 246899999999999
Q ss_pred HHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCC
Q 038855 159 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPG 231 (260)
Q Consensus 159 ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g 231 (260)
++.+++.|++.+ .++.+..+||++++++|.++++.|++|..+|||||+++++|+|+|++++||..+
T Consensus 825 ~~~l~~~L~~~~-------p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~ 890 (1151)
T 2eyq_A 825 IQKAAERLAELV-------PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 890 (1151)
T ss_dssp HHHHHHHHHHHC-------TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETT
T ss_pred HHHHHHHHHHhC-------CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeC
Confidence 999999999864 367899999999999999999999999999999999999999999999999543
No 48
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.68 E-value=6.3e-17 Score=134.75 Aligned_cols=106 Identities=12% Similarity=0.196 Sum_probs=94.1
Q ss_pred eeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHH
Q 038855 116 PVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQM 195 (260)
Q Consensus 116 ~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~ 195 (260)
.++++|...+..+ .+...+..+.....++++|||++++..++.+++.|.+ .++.+..+||++++.+|.
T Consensus 7 ~i~q~~~~~~~~~---~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~---------~~~~~~~~~g~~~~~~R~ 74 (175)
T 2rb4_A 7 NIRQYYVLCEHRK---DKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQ---------DGHQVSLLSGELTVEQRA 74 (175)
T ss_dssp CEEEEEEECSSHH---HHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHT---------TTCCEEEECSSCCHHHHH
T ss_pred CceEEEEEcCChH---hHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHH---------cCCcEEEEeCCCCHHHHH
Confidence 3677888766543 3566677777777788999999999999999999987 388999999999999999
Q ss_pred HHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCc
Q 038855 196 KVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFV 233 (260)
Q Consensus 196 ~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~ 233 (260)
++++.|+.|..+|||||+++++|+|+|++++||++++|
T Consensus 75 ~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p 112 (175)
T 2rb4_A 75 SIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLP 112 (175)
T ss_dssp HHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCC
T ss_pred HHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCC
Confidence 99999999999999999999999999999999999998
No 49
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.67 E-value=2.3e-16 Score=131.87 Aligned_cols=113 Identities=12% Similarity=0.255 Sum_probs=97.4
Q ss_pred eeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHH
Q 038855 116 PVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQM 195 (260)
Q Consensus 116 ~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~ 195 (260)
.++++|...+..+ +...+..+.....++++|||++++..++.+++.|.. .++.+..+||++++.+|.
T Consensus 5 ~i~q~~~~~~~~~----K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~---------~~~~~~~~hg~~~~~~r~ 71 (172)
T 1t5i_A 5 GLQQYYVKLKDNE----KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVE---------QNFPAIAIHRGMPQEERL 71 (172)
T ss_dssp CCEEEEEECCGGG----HHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHH---------TTCCEEEECTTSCHHHHH
T ss_pred CeEEEEEECChHH----HHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHh---------cCCCEEEEECCCCHHHHH
Confidence 3677888776655 445566666666778999999999999999999988 388999999999999999
Q ss_pred HHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccce-eeecC
Q 038855 196 KVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKAR-SYDPV 241 (260)
Q Consensus 196 ~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~-~yd~~ 241 (260)
++++.|+.|..+|||||+++++|+|+|++++||++++|... .|-++
T Consensus 72 ~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr 118 (172)
T 1t5i_A 72 SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHR 118 (172)
T ss_dssp HHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHH
T ss_pred HHHHHHHCCCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999763 45543
No 50
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.66 E-value=1.3e-16 Score=136.22 Aligned_cols=130 Identities=16% Similarity=0.248 Sum_probs=95.6
Q ss_pred hhhCCCcEEEecCce---eeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccC
Q 038855 100 EYFGCAKAVHVQGRQ---FPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEA 176 (260)
Q Consensus 100 ~~~~~~~~v~v~~~~---~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~ 176 (260)
.|+.++..+.+.... ..+++.|...+... ++..+..+.... ++++|||++++..++.+++.|...
T Consensus 10 ~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~----K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~------- 77 (191)
T 2p6n_A 10 GVDLGTENLYFQSMGAASLDVIQEVEYVKEEA----KMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLK------- 77 (191)
T ss_dssp ------------------CCSEEEEEECCGGG----HHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHH-------
T ss_pred cccCCCEEEEECCCCCCCcCceEEEEEcChHH----HHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHc-------
Confidence 466666666554332 23667777665554 445555555543 568999999999999999999884
Q ss_pred CCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccce-eeecCCC
Q 038855 177 SRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKAR-SYDPVKG 243 (260)
Q Consensus 177 ~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~~-~yd~~~g 243 (260)
++.+..+||++++++|.++++.|+.|..+|||||+++++|+|+|++++||++++|... .|-.+.|
T Consensus 78 --g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~G 143 (191)
T 2p6n_A 78 --GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIG 143 (191)
T ss_dssp --TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHT
T ss_pred --CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhC
Confidence 8899999999999999999999999999999999999999999999999999999763 4554433
No 51
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.66 E-value=6.3e-16 Score=159.87 Aligned_cols=101 Identities=13% Similarity=0.168 Sum_probs=51.5
Q ss_pred cCCCCEEEEeCCHHHHHHHHHHHHHHHh--cC-ccCCCCeEEEEecCCCCHHHHHHHhcccCC-CCeEEEEecCcccccC
Q 038855 144 EAPGDILVFLTGQEEIESVERLVQERLL--QL-PEASRKLVTVPIFSSLPSEQQMKVFAPAAA-GFRKVILATNIAETSV 219 (260)
Q Consensus 144 ~~~g~iLVFl~~~~~ve~v~~~L~~~l~--~~-~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~-g~~kVlvaTdiae~gi 219 (260)
...+++|||++++..++.+++.|.+... .. +....+.....+||++++++|.++++.|+. |..+|||||+++++||
T Consensus 629 ~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGI 708 (936)
T 4a2w_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 708 (936)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC-----
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCC
Confidence 3468999999999999999999987310 00 000124556677999999999999999998 9999999999999999
Q ss_pred CCCCceEEEeCCCccce-eeecCCCc
Q 038855 220 TIPGIKYVIDPGFVKAR-SYDPVKGM 244 (260)
Q Consensus 220 dIp~V~~VId~g~~~~~-~yd~~~g~ 244 (260)
|+|++++||+++.|..+ .|-.+.|.
T Consensus 709 Dlp~v~~VI~yD~p~s~~~~iQr~GR 734 (936)
T 4a2w_A 709 DIVQCNLVVLYEYSGNVTKMIQVRGR 734 (936)
T ss_dssp -CCCCSEEEEESCCSCSHHHHCC---
T ss_pred cchhCCEEEEeCCCCCHHHHHHhcCC
Confidence 99999999999999874 57666664
No 52
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.63 E-value=5.7e-17 Score=165.56 Aligned_cols=141 Identities=13% Similarity=0.184 Sum_probs=95.6
Q ss_pred CceEEEEeccCCHHHHH-hhhCCCcEEEec---CceeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHH
Q 038855 83 PLKLIIMSASLDARGFS-EYFGCAKAVHVQ---GRQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEE 158 (260)
Q Consensus 83 ~~qlil~SATl~~~~~~-~~~~~~~~v~v~---~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ 158 (260)
..++++||||+.++.+. .++++..+..+. ....|+...+... .........+.... ...++++||||+.++
T Consensus 516 ~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~---~~~~~l~~~i~~~l--~~g~qvlVf~~~ie~ 590 (780)
T 1gm5_A 516 MVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQTMLVPM---DRVNEVYEFVRQEV--MRGGQAFIVYPLIEE 590 (780)
T ss_dssp CCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSSCCCCEECCCCS---STHHHHHHHHHHHT--TTSCCBCCBCCCC--
T ss_pred CCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCCCcceEEEEecc---chHHHHHHHHHHHH--hcCCcEEEEecchhh
Confidence 57899999999777666 355654433332 2234555544432 22223333333222 346789999998765
Q ss_pred H--------HHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeC
Q 038855 159 I--------ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDP 230 (260)
Q Consensus 159 v--------e~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~ 230 (260)
. +.+++.|.+. ...++.+..+||+|++++|.++++.|++|..+|||||+++++|+|+|++++||+.
T Consensus 591 se~l~~~~a~~l~~~L~~~------~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~ 664 (780)
T 1gm5_A 591 SDKLNVKSAVEMYEYLSKE------VFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIE 664 (780)
T ss_dssp ------CHHHHHHHSGGGS------CC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBC
T ss_pred hhhhhHHHHHHHHHHHHhh------hcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEe
Confidence 4 4444444330 1136789999999999999999999999999999999999999999999999999
Q ss_pred CCcc
Q 038855 231 GFVK 234 (260)
Q Consensus 231 g~~~ 234 (260)
+.+.
T Consensus 665 d~~r 668 (780)
T 1gm5_A 665 NPER 668 (780)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 8875
No 53
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.61 E-value=6.3e-16 Score=130.93 Aligned_cols=114 Identities=15% Similarity=0.179 Sum_probs=81.3
Q ss_pred eeeEEEeeCCCcchHHHHHHHHHHHHhhc-CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHH
Q 038855 116 PVEILYTLYPEPDFLDATLITIFQVHLDE-APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQ 194 (260)
Q Consensus 116 ~v~~~~~~~~~~~~~~~~~~~l~~i~~~~-~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r 194 (260)
.+++.|...+..+. +..+..+.... ..+++|||++++..++.+++.|+. .++.+..+||++++.+|
T Consensus 19 ~i~q~~~~v~~~~K----~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~---------~g~~~~~lhg~~~~~~r 85 (185)
T 2jgn_A 19 NITQKVVWVEESDK----RSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYH---------EGYACTSIHGDRSQRDR 85 (185)
T ss_dssp TEEEEEEECCGGGH----HHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHH---------TTCCEEEEC--------
T ss_pred CceEEEEEeCcHHH----HHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHH---------cCCceEEEeCCCCHHHH
Confidence 36777777666553 44444544444 467999999999999999999988 48899999999999999
Q ss_pred HHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCccc-eeeecCC
Q 038855 195 MKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKA-RSYDPVK 242 (260)
Q Consensus 195 ~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~~-~~yd~~~ 242 (260)
.++++.|+.|..+|||||+++++|+|+|++++||++++|.. ..|..+.
T Consensus 86 ~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~ 134 (185)
T 2jgn_A 86 EEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI 134 (185)
T ss_dssp CHHHHHHHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHH
T ss_pred HHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHc
Confidence 99999999999999999999999999999999999999976 3455433
No 54
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.60 E-value=1.1e-16 Score=167.70 Aligned_cols=129 Identities=10% Similarity=0.092 Sum_probs=85.9
Q ss_pred CceEEEEeccCCHH-HHH-hhhCCCcEEEecCcee---eeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHH
Q 038855 83 PLKLIIMSASLDAR-GFS-EYFGCAKAVHVQGRQF---PVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQE 157 (260)
Q Consensus 83 ~~qlil~SATl~~~-~~~-~~~~~~~~v~v~~~~~---~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ 157 (260)
..|+++||||+... .+. .+++....+.+..... .+.+.+........ +..+.... ++++||||+++.
T Consensus 215 ~~q~~l~SAT~t~~~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~~~k~~~-------L~~ll~~~-~~~~LVF~~t~~ 286 (1054)
T 1gku_B 215 EARGCLMVSTATAKKGKKAELFRQLLNFDIGSSRITVRNVEDVAVNDESIST-------LSSILEKL-GTGGIIYARTGE 286 (1054)
T ss_dssp CCSSEEEECCCCSCCCTTHHHHHHHHCCCCSCCEECCCCEEEEEESCCCTTT-------THHHHTTS-CSCEEEEESSHH
T ss_pred CCceEEEEecCCCchhHHHHHhhcceEEEccCcccCcCCceEEEechhHHHH-------HHHHHhhc-CCCEEEEEcCHH
Confidence 56789999998432 111 2332222222322222 35566653322222 22333332 678999999999
Q ss_pred HHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEe----cCcccccCCCCCc-eEEEeCCC
Q 038855 158 EIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILA----TNIAETSVTIPGI-KYVIDPGF 232 (260)
Q Consensus 158 ~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlva----Tdiae~gidIp~V-~~VId~g~ 232 (260)
.++.+++.|.+ . +.+..+||++. ++++.|+.|..+|||| ||++++|||+|+| ++||++|+
T Consensus 287 ~a~~l~~~L~~---------~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~ 351 (1054)
T 1gku_B 287 EAEEIYESLKN---------K-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGC 351 (1054)
T ss_dssp HHHHHHHTTTT---------S-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESC
T ss_pred HHHHHHHHHhh---------c-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCC
Confidence 99999988876 2 78999999983 6678889999999999 9999999999995 99999999
Q ss_pred cc
Q 038855 233 VK 234 (260)
Q Consensus 233 ~~ 234 (260)
|+
T Consensus 352 P~ 353 (1054)
T 1gku_B 352 PS 353 (1054)
T ss_dssp CE
T ss_pred Cc
Confidence 93
No 55
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.36 E-value=1.3e-16 Score=132.58 Aligned_cols=103 Identities=14% Similarity=0.243 Sum_probs=90.2
Q ss_pred HHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEec
Q 038855 133 TLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILAT 212 (260)
Q Consensus 133 ~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaT 212 (260)
+...+..+.....++++|||++++..++.+++.|... ++.+..+||++++++|.++++.|+.|..+|||||
T Consensus 17 k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT 87 (170)
T 2yjt_D 17 KTALLVHLLKQPEATRSIVFVRKRERVHELANWLREA---------GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 87 (170)
Confidence 4445555555556789999999999999999999873 8899999999999999999999999999999999
Q ss_pred CcccccCCCCCceEEEeCCCccc-eeeecCCCc
Q 038855 213 NIAETSVTIPGIKYVIDPGFVKA-RSYDPVKGM 244 (260)
Q Consensus 213 diae~gidIp~V~~VId~g~~~~-~~yd~~~g~ 244 (260)
+++++|+|+|++++||++++|.. ..|-.+.|.
T Consensus 88 ~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR 120 (170)
T 2yjt_D 88 DVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGR 120 (170)
Confidence 99999999999999999999977 457766654
No 56
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.58 E-value=1.1e-14 Score=145.87 Aligned_cols=133 Identities=13% Similarity=0.126 Sum_probs=96.5
Q ss_pred CceEEEEeccCCHHHHHhhhCCCcEEEecCc----eeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHH
Q 038855 83 PLKLIIMSASLDARGFSEYFGCAKAVHVQGR----QFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEE 158 (260)
Q Consensus 83 ~~qlil~SATl~~~~~~~~~~~~~~v~v~~~----~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ 158 (260)
..|+++||||+....+.. ...++....+ ..|. .... +........+..+.... ..++++|||++|+..
T Consensus 380 ~~q~i~~SAT~~~~~~~~---~~~~~~~~~r~~~l~~p~--i~v~-~~~~~~~~Ll~~l~~~~--~~~~~vlVf~~t~~~ 451 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH---SGRVVEQIIRPTGLLDPL--VRVK-PTENQILDLMEGIRERA--ARGERTLVTVLTVRM 451 (664)
T ss_dssp CSEEEEEESSCCHHHHHH---CSEEEEECSCTTCCCCCE--EEEE-CSTTHHHHHHHHHHHHH--HTTCEEEEECSSHHH
T ss_pred cCCEEEEecCCCHHHHHh---hhCeeeeeeccCCCCCCe--EEEe-cccchHHHHHHHHHHHH--hcCCEEEEEECCHHH
Confidence 467899999996544332 1122222111 1222 1121 12222333333333322 246799999999999
Q ss_pred HHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCC
Q 038855 159 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGF 232 (260)
Q Consensus 159 ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~ 232 (260)
++.+++.|.+ .++.+..+||++++.+|.++++.|+.|..+|||||+++++|+|+|+|++||+++.
T Consensus 452 ae~L~~~L~~---------~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~ 516 (664)
T 1c4o_A 452 AEELTSFLVE---------HGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDA 516 (664)
T ss_dssp HHHHHHHHHH---------TTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTT
T ss_pred HHHHHHHHHh---------cCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCC
Confidence 9999999988 3888999999999999999999999999999999999999999999999999986
No 57
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.57 E-value=2e-14 Score=139.95 Aligned_cols=90 Identities=14% Similarity=0.104 Sum_probs=72.3
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeE---EEEecCcccccCCC
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRK---VILATNIAETSVTI 221 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~k---VlvaTdiae~gidI 221 (260)
..+++||||++++.++.+++.|.+........ ..-.+..+||++++ +|.++++.|++|..+ ||+||+++++|+|+
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~-~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDi 515 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRK-HPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDA 515 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTT-CTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCC
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhcc-CCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccc
Confidence 35799999999999999999998864321111 12237789998764 799999999987655 89999999999999
Q ss_pred CCceEEEeCCCccce
Q 038855 222 PGIKYVIDPGFVKAR 236 (260)
Q Consensus 222 p~V~~VId~g~~~~~ 236 (260)
|++++||....+...
T Consensus 516 p~v~~Vi~~~~~~s~ 530 (590)
T 3h1t_A 516 PTCKNVVLARVVNSM 530 (590)
T ss_dssp TTEEEEEEESCCCCH
T ss_pred hheeEEEEEecCCCh
Confidence 999999998877653
No 58
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.57 E-value=1.7e-14 Score=144.40 Aligned_cols=133 Identities=14% Similarity=0.131 Sum_probs=96.0
Q ss_pred CceEEEEeccCCHHHHHhhhCCCcEEEecC----ceeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHH
Q 038855 83 PLKLIIMSASLDARGFSEYFGCAKAVHVQG----RQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEE 158 (260)
Q Consensus 83 ~~qlil~SATl~~~~~~~~~~~~~~v~v~~----~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ 158 (260)
..|+++||||+....+.. . ...+.... ...|. .... +........+..+.... ..++++|||++|+..
T Consensus 386 ~~q~i~~SAT~~~~~~~~--~-~~~~~~~~r~~~l~~p~--i~v~-~~~~~~~~Ll~~l~~~~--~~~~~vlVf~~t~~~ 457 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEH--T-DEMVEQIIRPTGLLDPL--IDVR-PIEGQIDDLIGEIQARI--ERNERVLVTTLTKKM 457 (661)
T ss_dssp CSEEEEECSSCCHHHHHH--C-SSCEEECCCTTCCCCCE--EEEE-CSTTHHHHHHHHHHHHH--TTTCEEEEECSSHHH
T ss_pred CCCEEEEecCCChhHHHh--h-hCeeeeeecccCCCCCe--EEEe-cccchHHHHHHHHHHHH--hcCCeEEEEECCHHH
Confidence 468999999996544332 1 11111111 11222 1122 12222333333332222 245799999999999
Q ss_pred HHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCC
Q 038855 159 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGF 232 (260)
Q Consensus 159 ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~ 232 (260)
++.+++.|.+ .++.+..+||++++.+|.++++.|+.|..+|||||+++++|+|+|+|++||+++.
T Consensus 458 ae~L~~~L~~---------~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~ 522 (661)
T 2d7d_A 458 SEDLTDYLKE---------IGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDA 522 (661)
T ss_dssp HHHHHHHHHH---------TTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTT
T ss_pred HHHHHHHHHh---------cCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCc
Confidence 9999999998 3888999999999999999999999999999999999999999999999999986
No 59
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.52 E-value=7.6e-14 Score=132.71 Aligned_cols=80 Identities=14% Similarity=0.149 Sum_probs=69.7
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEec-CcccccCCCCCc
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILAT-NIAETSVTIPGI 224 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaT-diae~gidIp~V 224 (260)
...++||++ .+.++.+++.|.+. +..+..+||++++++|.++++.|++|..+||||| +++++|+|+|++
T Consensus 348 ~~~~ivf~~-~~~~~~l~~~L~~~---------~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v 417 (510)
T 2oca_A 348 ENAFVMFKH-VSHGKAIFDLIKNE---------YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNL 417 (510)
T ss_dssp CEEEEEESS-HHHHHHHHHHHHTT---------CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSE
T ss_pred CCeEEEEec-HHHHHHHHHHHHHc---------CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccC
Confidence 445566666 88888888888763 4589999999999999999999999999999999 999999999999
Q ss_pred eEEEeCCCccc
Q 038855 225 KYVIDPGFVKA 235 (260)
Q Consensus 225 ~~VId~g~~~~ 235 (260)
++||..+.+..
T Consensus 418 ~~vi~~~~~~s 428 (510)
T 2oca_A 418 HHVVLAHGVKS 428 (510)
T ss_dssp EEEEESSCCCS
T ss_pred cEEEEeCCCCC
Confidence 99999988864
No 60
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.48 E-value=4.4e-15 Score=139.93 Aligned_cols=88 Identities=9% Similarity=0.171 Sum_probs=76.0
Q ss_pred HHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC
Q 038855 134 LITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN 213 (260)
Q Consensus 134 ~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd 213 (260)
+..+..+.....++++|||+++.+.++.+++.|. +..+||++++.+|.++++.|+.|..+|||||+
T Consensus 337 ~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~--------------~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~ 402 (472)
T 2fwr_A 337 IRKLREILERHRKDKIIIFTRHNELVYRISKVFL--------------IPAITHRTSREEREEILEGFRTGRFRAIVSSQ 402 (472)
T ss_dssp HHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT--------------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSS
T ss_pred HHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC--------------cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcC
Confidence 3445555555668899999999999998777652 44699999999999999999999999999999
Q ss_pred cccccCCCCCceEEEeCCCccc
Q 038855 214 IAETSVTIPGIKYVIDPGFVKA 235 (260)
Q Consensus 214 iae~gidIp~V~~VId~g~~~~ 235 (260)
++++|+|+|++++||.++.+..
T Consensus 403 ~~~~Gldlp~~~~Vi~~~~~~s 424 (472)
T 2fwr_A 403 VLDEGIDVPDANVGVIMSGSGS 424 (472)
T ss_dssp CCCSSSCSCCBSEEEEECCSSC
T ss_pred chhcCcccccCcEEEEECCCCC
Confidence 9999999999999999988754
No 61
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.47 E-value=4e-14 Score=145.96 Aligned_cols=123 Identities=19% Similarity=0.182 Sum_probs=87.8
Q ss_pred eEEEEeccCC--HHHHHhhhCCCcEEEecCceeeeeEE----EeeCCCcchHHHHHHHHHHHHhh--cCCCCEEEEeCCH
Q 038855 85 KLIIMSASLD--ARGFSEYFGCAKAVHVQGRQFPVEIL----YTLYPEPDFLDATLITIFQVHLD--EAPGDILVFLTGQ 156 (260)
Q Consensus 85 qlil~SATl~--~~~~~~~~~~~~~v~v~~~~~~v~~~----~~~~~~~~~~~~~~~~l~~i~~~--~~~g~iLVFl~~~ 156 (260)
++..||+|.. ...|.+.++ ..++.++.. .|+... ++..... .+...+...... ..+.++|||++|+
T Consensus 397 kL~GMTGTa~te~~Ef~~iY~-l~vv~IPtn-~p~~R~d~~d~v~~t~~----~K~~al~~~i~~~~~~gqpvLVft~Si 470 (922)
T 1nkt_A 397 KLAGMTGTAQTEAAELHEIYK-LGVVSIPTN-MPMIREDQSDLIYKTEE----AKYIAVVDDVAERYAKGQPVLIGTTSV 470 (922)
T ss_dssp EEEEEESCCGGGHHHHHHHHC-CEEEECCCS-SCCCCEECCCEEESCHH----HHHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred hhhccccCchhHHHHHHHHhC-CCeEEeCCC-CCcccccCCcEEEeCHH----HHHHHHHHHHHHHHhcCCcEEEEECCH
Confidence 5778888883 445666554 456777663 332211 1111222 334444433322 2345899999999
Q ss_pred HHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCCc
Q 038855 157 EEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPGI 224 (260)
Q Consensus 157 ~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V 224 (260)
+.++.+.+.|.+ .++++..|||+..+.++..+.++++.| .|+||||+|+||+||+.+
T Consensus 471 e~sE~Ls~~L~~---------~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~ 527 (922)
T 1nkt_A 471 ERSEYLSRQFTK---------RRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLG 527 (922)
T ss_dssp HHHHHHHHHHHH---------TTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTT
T ss_pred HHHHHHHHHHHH---------CCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCC
Confidence 999999999998 599999999999888888888888877 599999999999999975
No 62
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.45 E-value=2.9e-13 Score=138.95 Aligned_cols=145 Identities=17% Similarity=0.173 Sum_probs=105.0
Q ss_pred eEEEEeccCC--HHHHHhhhCCCcEEEecCceeeeeEE----EeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHH
Q 038855 85 KLIIMSASLD--ARGFSEYFGCAKAVHVQGRQFPVEIL----YTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEE 158 (260)
Q Consensus 85 qlil~SATl~--~~~~~~~~~~~~~v~v~~~~~~v~~~----~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ 158 (260)
++..||+|.. ...|.+.++ ..++.++.. .|+... ++.....+...+.+..+...+. .+.++|||++|++.
T Consensus 369 kl~GmTGTa~te~~e~~~iY~-l~vv~IPtn-~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~--~~~pvLVft~s~~~ 444 (844)
T 1tf5_A 369 KLAGMTGTAKTEEEEFRNIYN-MQVVTIPTN-RPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYM--TGQPVLVGTVAVET 444 (844)
T ss_dssp EEEEEESCCGGGHHHHHHHHC-CCEEECCCS-SCCCCEECCCEEESSHHHHHHHHHHHHHHHHH--HTCCEEEEESCHHH
T ss_pred hhccCCcccchhHHHHHHHhC-CceEEecCC-CCcccccCCcEEEeCHHHHHHHHHHHHHHHHh--cCCcEEEEECCHHH
Confidence 6889999983 456666664 456666543 332110 1112222323333332322222 35679999999999
Q ss_pred HHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCC--------CceEEEeC
Q 038855 159 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIP--------GIKYVIDP 230 (260)
Q Consensus 159 ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp--------~V~~VId~ 230 (260)
++.+.+.|.+ .++++..|||++.+.+|..+..+++.| .|+||||+|+||+||+ ++.|||++
T Consensus 445 se~Ls~~L~~---------~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~ 513 (844)
T 1tf5_A 445 SELISKLLKN---------KGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGT 513 (844)
T ss_dssp HHHHHHHHHT---------TTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEES
T ss_pred HHHHHHHHHH---------CCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEe
Confidence 9999999988 499999999999999988777777666 5999999999999999 89999999
Q ss_pred CCccc-eeeecCCCc
Q 038855 231 GFVKA-RSYDPVKGM 244 (260)
Q Consensus 231 g~~~~-~~yd~~~g~ 244 (260)
.+|.. +.|.++.|-
T Consensus 514 d~p~s~r~y~hr~GR 528 (844)
T 1tf5_A 514 ERHESRRIDNQLRGR 528 (844)
T ss_dssp SCCSSHHHHHHHHTT
T ss_pred cCCCCHHHHHhhcCc
Confidence 99998 568886664
No 63
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.40 E-value=9.6e-13 Score=135.15 Aligned_cols=143 Identities=18% Similarity=0.158 Sum_probs=108.7
Q ss_pred eEEEEeccC--CHHHHHhhhCCCcEEEecCceeeeeEE----EeeCCCcchHHHHHHHHHHHHhh--cCCCCEEEEeCCH
Q 038855 85 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEIL----YTLYPEPDFLDATLITIFQVHLD--EAPGDILVFLTGQ 156 (260)
Q Consensus 85 qlil~SATl--~~~~~~~~~~~~~~v~v~~~~~~v~~~----~~~~~~~~~~~~~~~~l~~i~~~--~~~g~iLVFl~~~ 156 (260)
++..||+|. ....|.+.++ -.++.+|.. .|+... ++..... .+...+...... ..+.++|||++|+
T Consensus 378 kl~GmTGTa~te~~ef~~iY~-l~vv~IPtn-~p~~R~d~~d~v~~~~~----~K~~al~~~i~~~~~~gqpvLVft~si 451 (853)
T 2fsf_A 378 KLAGMTGTADTEAFEFSSIYK-LDTVVVPTN-RPMIRKDLPDLVYMTEA----EKIQAIIEDIKERTAKGQPVLVGTISI 451 (853)
T ss_dssp EEEEEECTTCCCHHHHHHHHC-CEEEECCCS-SCCCCEECCCEEESSHH----HHHHHHHHHHHHHHTTTCCEEEEESSH
T ss_pred hhhcCCCCchhHHHHHHHHhC-CcEEEcCCC-CCceeecCCcEEEeCHH----HHHHHHHHHHHHHhcCCCCEEEEECcH
Confidence 688999998 4567777765 567777753 343211 1111222 344444443322 2356899999999
Q ss_pred HHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCCC-------------
Q 038855 157 EEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIPG------------- 223 (260)
Q Consensus 157 ~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~------------- 223 (260)
+.++.+.+.|.+ .++++..|||++.+.++..+.++++.| .|+||||+|+||+||+.
T Consensus 452 e~se~Ls~~L~~---------~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~ 520 (853)
T 2fsf_A 452 EKSELVSNELTK---------AGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALEN 520 (853)
T ss_dssp HHHHHHHHHHHH---------TTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHH---------CCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhccc
Confidence 999999999998 599999999999999998888999988 59999999999999997
Q ss_pred -------------------c-----eEEEeCCCccc-eeeecCCCc
Q 038855 224 -------------------I-----KYVIDPGFVKA-RSYDPVKGM 244 (260)
Q Consensus 224 -------------------V-----~~VId~g~~~~-~~yd~~~g~ 244 (260)
| .|||++.+|.. +.|+++.|.
T Consensus 521 ~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GR 566 (853)
T 2fsf_A 521 PTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGR 566 (853)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTT
T ss_pred chhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccc
Confidence 4 69999999988 568886664
No 64
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.40 E-value=2e-13 Score=141.87 Aligned_cols=96 Identities=10% Similarity=0.061 Sum_probs=85.9
Q ss_pred HHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCC--eEEEE
Q 038855 133 TLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGF--RKVIL 210 (260)
Q Consensus 133 ~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~--~kVlv 210 (260)
+...+..+.....++++||||+++..++.+++.|.+. .++.+..+||++++.+|.++++.|+.|. .+|||
T Consensus 490 K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~--------~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLv 561 (968)
T 3dmq_A 490 RVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRER--------EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLL 561 (968)
T ss_dssp HHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTT--------TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEE
T ss_pred HHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHH--------cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEE
Confidence 4556666666667889999999999999999999853 3889999999999999999999999997 99999
Q ss_pred ecCcccccCCCCCceEEEeCCCccce
Q 038855 211 ATNIAETSVTIPGIKYVIDPGFVKAR 236 (260)
Q Consensus 211 aTdiae~gidIp~V~~VId~g~~~~~ 236 (260)
||+++++|+|+|++++||+++.|..+
T Consensus 562 aT~v~~~GlDl~~~~~VI~~d~p~~~ 587 (968)
T 3dmq_A 562 CSEIGSEGRNFQFASHMVMFDLPFNP 587 (968)
T ss_dssp CSCCTTCSSCCTTCCEEECSSCCSSH
T ss_pred ecchhhcCCCcccCcEEEEecCCCCH
Confidence 99999999999999999999998753
No 65
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.39 E-value=7.4e-13 Score=134.73 Aligned_cols=145 Identities=17% Similarity=0.203 Sum_probs=102.7
Q ss_pred eEEEEeccC--CHHHHHhhhCCCcEEEecCceeee---eEE-EeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHH
Q 038855 85 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPV---EIL-YTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEE 158 (260)
Q Consensus 85 qlil~SATl--~~~~~~~~~~~~~~v~v~~~~~~v---~~~-~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ 158 (260)
++..||+|+ ....|.+.++ ..++.++.. .|. ... .+.........+.+..+...+. .+.++|||++|++.
T Consensus 411 kL~GMTGTa~te~~Ef~~iY~-l~vv~IPtn-kp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~--~gqpVLVFt~S~e~ 486 (822)
T 3jux_A 411 KLAGMTGTAKTEESEFVQVYG-MEVVVIPTH-KPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYK--KGQPVLVGTTSIEK 486 (822)
T ss_dssp EEEEEESSCGGGHHHHHHHSC-CCEEECCCS-SCCCCEECCCEEESSHHHHHHHHHHHHHHHHH--HTCCEEEEESSHHH
T ss_pred HHeEECCCCchHHHHHHHHhC-CeEEEECCC-CCcceeecCcEEEecHHHHHHHHHHHHHHHhh--CCCCEEEEECCHHH
Confidence 699999999 3456666664 557777653 221 110 1111222333333333333222 35689999999999
Q ss_pred HHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCCCC--------CceEEEeC
Q 038855 159 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVTIP--------GIKYVIDP 230 (260)
Q Consensus 159 ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gidIp--------~V~~VId~ 230 (260)
++.+++.|.+ .++++..+||+..+.++..+..+++.| .|+||||+|+||+||+ |+.|||++
T Consensus 487 sE~Ls~~L~~---------~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInt 555 (822)
T 3jux_A 487 SELLSSMLKK---------KGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGT 555 (822)
T ss_dssp HHHHHHHHHT---------TTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEES
T ss_pred HHHHHHHHHH---------CCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEec
Confidence 9999999988 489999999997666666666666666 5999999999999998 77799999
Q ss_pred CCccc-eeeecCCCc
Q 038855 231 GFVKA-RSYDPVKGM 244 (260)
Q Consensus 231 g~~~~-~~yd~~~g~ 244 (260)
.+|.. +.|.++.|.
T Consensus 556 e~Pes~r~y~qriGR 570 (822)
T 3jux_A 556 ERHESRRIDNQLRGR 570 (822)
T ss_dssp SCCSSHHHHHHHHTT
T ss_pred CCCCCHHHHHHhhCc
Confidence 99987 568876654
No 66
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.26 E-value=2.6e-11 Score=114.92 Aligned_cols=84 Identities=8% Similarity=0.103 Sum_probs=73.8
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCC-Ce-EEEEecCcccccCCCC
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAG-FR-KVILATNIAETSVTIP 222 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g-~~-kVlvaTdiae~gidIp 222 (260)
.+.++|||++....++.+++.|.... ++.+..+||++++++|.++++.|++| .. .+|+||+++++|+|+|
T Consensus 340 ~~~k~lvF~~~~~~~~~l~~~l~~~~--------~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~ 411 (500)
T 1z63_A 340 EGDKIAIFTQFVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLT 411 (500)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHH--------TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCT
T ss_pred cCCcEEEEEehHHHHHHHHHHHHHhh--------CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchh
Confidence 46799999999999999999998742 67788999999999999999999877 34 4899999999999999
Q ss_pred CceEEEeCCCccce
Q 038855 223 GIKYVIDPGFVKAR 236 (260)
Q Consensus 223 ~V~~VId~g~~~~~ 236 (260)
++++||.++.+..+
T Consensus 412 ~~~~vi~~d~~~~~ 425 (500)
T 1z63_A 412 SANRVIHFDRWWNP 425 (500)
T ss_dssp TCSEEEESSCCSCC
T ss_pred hCCEEEEeCCCCCc
Confidence 99999999988764
No 67
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.05 E-value=1.5e-09 Score=114.01 Aligned_cols=88 Identities=5% Similarity=-0.053 Sum_probs=65.6
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcC---ccCCCCeEE-EEecCC----------C----------CH----------
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQL---PEASRKLVT-VPIFSS----------L----------PS---------- 191 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~---~~~~~~~~~-~~lh~~----------l----------~~---------- 191 (260)
+++.||||++++.+..+++.|.+..... .....++.+ +.+||+ + ++
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I 616 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAI 616 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHH
Confidence 4689999999999999999998865321 001123444 445542 2 22
Q ss_pred -------------------HHHHHHhcccCCCCeEEEEecCcccccCCCCCceEEEeCCCcc
Q 038855 192 -------------------EQQMKVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVK 234 (260)
Q Consensus 192 -------------------~~r~~v~~~~~~g~~kVlvaTdiae~gidIp~V~~VId~g~~~ 234 (260)
.+|..+++.|+.|..+|||+||++.+|+|+|.+ +|+..+.|.
T Consensus 617 ~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl 677 (1038)
T 2w00_A 617 REYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNL 677 (1038)
T ss_dssp HHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCC
T ss_pred HHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCC
Confidence 247788999999999999999999999999999 677776654
No 68
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.04 E-value=2.5e-10 Score=98.92 Aligned_cols=63 Identities=38% Similarity=0.584 Sum_probs=56.7
Q ss_pred CCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCceE
Q 038855 7 YLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLKL 86 (260)
Q Consensus 7 ~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql 86 (260)
.|+++++|||||||+|++++|+++..++.+....+ +.|+
T Consensus 173 ~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-----------------------------------------~~~~ 211 (235)
T 3llm_A 173 GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-----------------------------------------EVRI 211 (235)
T ss_dssp CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-----------------------------------------TSEE
T ss_pred hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC-----------------------------------------CCeE
Confidence 48899999999999999999999999998887766 7899
Q ss_pred EEEeccCCHHHHHhhhCCCcEEEe
Q 038855 87 IIMSASLDARGFSEYFGCAKAVHV 110 (260)
Q Consensus 87 il~SATl~~~~~~~~~~~~~~v~v 110 (260)
++||||++.+.+.+||++++++++
T Consensus 212 il~SAT~~~~~~~~~~~~~pvi~v 235 (235)
T 3llm_A 212 VLMSATIDTSMFCEYFFNCPIIEV 235 (235)
T ss_dssp EEEECSSCCHHHHHHTTSCCCEEC
T ss_pred EEEecCCCHHHHHHHcCCCCEEeC
Confidence 999999988889999999888764
No 69
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.01 E-value=7.3e-10 Score=99.49 Aligned_cols=89 Identities=10% Similarity=0.125 Sum_probs=76.4
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCC-CeE-EEEecCcccccCCCC
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAG-FRK-VILATNIAETSVTIP 222 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g-~~k-VlvaTdiae~gidIp 222 (260)
.+.++|||+.....++.+...|.+.. ++.+..+||++++++|.++++.|+.| ..+ +|+||+++++|++++
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~~--------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~ 182 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLT 182 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHH--------CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCT
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhc--------CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcc
Confidence 46799999999999999999998742 77889999999999999999999877 555 799999999999999
Q ss_pred CceEEEeCCCccce-eeecC
Q 038855 223 GIKYVIDPGFVKAR-SYDPV 241 (260)
Q Consensus 223 ~V~~VId~g~~~~~-~yd~~ 241 (260)
++++||+++.|..+ .|..+
T Consensus 183 ~a~~VI~~d~~wnp~~~~Q~ 202 (271)
T 1z5z_A 183 SANRVIHFDRWWNPAVEDQA 202 (271)
T ss_dssp TCSEEEECSCCSCTTTC---
T ss_pred cCCEEEEECCCCChhHHHHH
Confidence 99999999998764 34433
No 70
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.86 E-value=9.6e-09 Score=104.36 Aligned_cols=104 Identities=12% Similarity=0.049 Sum_probs=84.7
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCC---eEEEEecCcccccCCC
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGF---RKVILATNIAETSVTI 221 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~---~kVlvaTdiae~gidI 221 (260)
.+.++|||+.....++.+...|... ++.+..+||+++..+|.++++.|..+. ..+|++|.+++.||++
T Consensus 571 ~g~kvLIFsq~~~~ld~L~~~L~~~---------g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL 641 (800)
T 3mwy_W 571 DGHRVLIFSQMVRMLDILGDYLSIK---------GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINL 641 (800)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHH---------TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCC
T ss_pred CCCeEEEEechHHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCc
Confidence 4569999999999999999999874 889999999999999999999998753 4699999999999999
Q ss_pred CCceEEEeCCCccceeee-------cCCCce--eeeEEeeehhhh
Q 038855 222 PGIKYVIDPGFVKARSYD-------PVKGME--SLIVVPISKAQA 257 (260)
Q Consensus 222 p~V~~VId~g~~~~~~yd-------~~~g~~--~l~~~~isk~~~ 257 (260)
+.+++||.++.+-.+.-+ ++.|-. ..+.+.+++.+.
T Consensus 642 ~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~Ti 686 (800)
T 3mwy_W 642 MTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTV 686 (800)
T ss_dssp TTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSH
T ss_pred cccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCH
Confidence 999999999887654322 444533 345556666543
No 71
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.62 E-value=1.1e-07 Score=94.37 Aligned_cols=91 Identities=9% Similarity=0.145 Sum_probs=79.0
Q ss_pred HHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCe---EEEEecC
Q 038855 137 IFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFR---KVILATN 213 (260)
Q Consensus 137 l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~---kVlvaTd 213 (260)
++.........++|||+.....++.+++.|... ++.+..+||++++++|.++++.|..|.. .+|++|.
T Consensus 407 ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~---------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 477 (644)
T 1z3i_X 407 ILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNR---------RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK 477 (644)
T ss_dssp HHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHH---------TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG
T ss_pred HHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHC---------CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecc
Confidence 333343445779999999999999999999874 8899999999999999999999988754 5899999
Q ss_pred cccccCCCCCceEEEeCCCccce
Q 038855 214 IAETSVTIPGIKYVIDPGFVKAR 236 (260)
Q Consensus 214 iae~gidIp~V~~VId~g~~~~~ 236 (260)
+++.|++++++++||.++.+-.+
T Consensus 478 a~g~Glnl~~a~~Vi~~d~~wnp 500 (644)
T 1z3i_X 478 AGGCGLNLIGANRLVMFDPDWNP 500 (644)
T ss_dssp GSCTTCCCTTEEEEEECSCCSSH
T ss_pred cccCCcccccCCEEEEECCCCCc
Confidence 99999999999999999988654
No 72
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.25 E-value=2.1e-07 Score=90.68 Aligned_cols=94 Identities=15% Similarity=0.157 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEE
Q 038855 131 DATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVIL 210 (260)
Q Consensus 131 ~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlv 210 (260)
......+..+... .+|.+|||+|+...++.+++.+.. .. +..+|.. .+|.++++.|+.+. .|++
T Consensus 370 ~~~~~~l~~~~~~-~~g~~lvff~S~~~~~~v~~~l~~-----------~~-~~~q~~~--~~~~~~l~~f~~~~-~il~ 433 (540)
T 2vl7_A 370 PIYSILLKRIYEN-SSKSVLVFFPSYEMLESVRIHLSG-----------IP-VIEENKK--TRHEEVLELMKTGK-YLVM 433 (540)
T ss_dssp HHHHHHHHHHHHT-CSSEEEEEESCHHHHHHHHTTCTT-----------SC-EEESTTT--CCHHHHHHHHHTSC-CEEE
T ss_pred HHHHHHHHHHHHh-CCCCEEEEeCCHHHHHHHHHHhcc-----------Cc-eEecCCC--CcHHHHHHHHhcCC-eEEE
Confidence 3344445555543 688999999999999988876643 22 3456554 45667788887653 5777
Q ss_pred --ecCcccccCCCCC----ceEEEeCCCccceeeec
Q 038855 211 --ATNIAETSVTIPG----IKYVIDPGFVKARSYDP 240 (260)
Q Consensus 211 --aTdiae~gidIp~----V~~VId~g~~~~~~yd~ 240 (260)
+|+.+..|||+|+ +++||..|+|.....||
T Consensus 434 ~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~ 469 (540)
T 2vl7_A 434 LVMRAKESEGVEFREKENLFESLVLAGLPYPNVSDD 469 (540)
T ss_dssp EEC---------------CEEEEEEESCCCCCTTSH
T ss_pred EEecCceecceecCCCcccccEEEEECCCCCCCCCH
Confidence 8999999999998 99999999997655444
No 73
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.95 E-value=5.6e-06 Score=69.73 Aligned_cols=68 Identities=12% Similarity=0.194 Sum_probs=40.3
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCce
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLK 85 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 85 (260)
..++++++||+||||. ..+.++...+.+.+...++ ..|
T Consensus 151 ~~~~~~~~iViDEah~-~~~~~~~~~l~~i~~~~~~-----------------------------------------~~~ 188 (224)
T 1qde_A 151 FRTDKIKMFILDEADE-MLSSGFKEQIYQIFTLLPP-----------------------------------------TTQ 188 (224)
T ss_dssp SCCTTCCEEEEETHHH-HHHTTCHHHHHHHHHHSCT-----------------------------------------TCE
T ss_pred cchhhCcEEEEcChhH-HhhhhhHHHHHHHHHhCCc-----------------------------------------cCe
Confidence 4578899999999994 3333333333322222233 678
Q ss_pred EEEEeccCCHH---HHHhhhCCCcEEEecCcee
Q 038855 86 LIIMSASLDAR---GFSEYFGCAKAVHVQGRQF 115 (260)
Q Consensus 86 lil~SATl~~~---~~~~~~~~~~~v~v~~~~~ 115 (260)
+++||||+..+ .+..|++++..+.+.+..+
T Consensus 189 ~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~~~ 221 (224)
T 1qde_A 189 VVLLSATMPNDVLEVTTKFMRNPVRILVKKDEL 221 (224)
T ss_dssp EEEEESSCCHHHHHHHHHHCSSCEEEC------
T ss_pred EEEEEeecCHHHHHHHHHHCCCCEEEEecCCcc
Confidence 99999999653 3446888777776665443
No 74
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=97.83 E-value=1.3e-05 Score=67.90 Aligned_cols=62 Identities=18% Similarity=0.237 Sum_probs=40.1
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCce
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLK 85 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 85 (260)
..++++++||+||||. ..+.++...+.+.+...++ ..|
T Consensus 163 ~~~~~~~~lViDEah~-~~~~~~~~~~~~i~~~~~~-----------------------------------------~~~ 200 (228)
T 3iuy_A 163 VNLRSITYLVIDEADK-MLDMEFEPQIRKILLDVRP-----------------------------------------DRQ 200 (228)
T ss_dssp CCCTTCCEEEECCHHH-HHHTTCHHHHHHHHHHSCS-----------------------------------------SCE
T ss_pred cCcccceEEEEECHHH-HhccchHHHHHHHHHhCCc-----------------------------------------CCe
Confidence 3578999999999993 4444444444433333333 679
Q ss_pred EEEEeccCCH--HHH-HhhhCCCcEEE
Q 038855 86 LIIMSASLDA--RGF-SEYFGCAKAVH 109 (260)
Q Consensus 86 lil~SATl~~--~~~-~~~~~~~~~v~ 109 (260)
+++||||++. +.+ ..|+.++..+.
T Consensus 201 ~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 201 TVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp EEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred EEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 9999999964 333 35777665543
No 75
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=97.77 E-value=1.9e-05 Score=67.56 Aligned_cols=67 Identities=16% Similarity=0.151 Sum_probs=42.2
Q ss_pred CCCCcccEEEEecCCcCCcc---hhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCC
Q 038855 6 PYLSRYSVIIVDEAHERTVH---TDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFP 82 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~---~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (260)
..++++++||+||||.. .+ .++...+.+.+..... +
T Consensus 171 ~~~~~~~~lViDEah~~-~~~~~~~~~~~~~~i~~~~~~----------------------------------------~ 209 (245)
T 3dkp_A 171 IDLASVEWLVVDESDKL-FEDGKTGFRDQLASIFLACTS----------------------------------------H 209 (245)
T ss_dssp CCCTTCCEEEESSHHHH-HHHC--CHHHHHHHHHHHCCC----------------------------------------T
T ss_pred cccccCcEEEEeChHHh-cccccccHHHHHHHHHHhcCC----------------------------------------C
Confidence 45789999999999952 22 2344444433333222 1
Q ss_pred CceEEEEeccCCH--HHHH-hhhCCCcEEEecCc
Q 038855 83 PLKLIIMSASLDA--RGFS-EYFGCAKAVHVQGR 113 (260)
Q Consensus 83 ~~qlil~SATl~~--~~~~-~~~~~~~~v~v~~~ 113 (260)
..|+++||||++. ..+. .|+.++..+.+..+
T Consensus 210 ~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 210 KVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp TCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred CcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 6789999999953 3444 57777777777553
No 76
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=97.74 E-value=2.2e-05 Score=68.37 Aligned_cols=63 Identities=17% Similarity=0.158 Sum_probs=42.4
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCce
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLK 85 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 85 (260)
..++++++||+|||| +..+.++...+.+.+...++ ..|
T Consensus 182 ~~l~~~~~lViDEah-~l~~~~~~~~l~~i~~~~~~-----------------------------------------~~~ 219 (249)
T 3ber_A 182 FNLRALKYLVMDEAD-RILNMDFETEVDKILKVIPR-----------------------------------------DRK 219 (249)
T ss_dssp CCCTTCCEEEECSHH-HHHHTTCHHHHHHHHHSSCS-----------------------------------------SSE
T ss_pred cCccccCEEEEcChh-hhhccChHHHHHHHHHhCCC-----------------------------------------CCe
Confidence 357899999999999 45555555544444433333 678
Q ss_pred EEEEeccCCHH--H-HHhhhCCCcEEEe
Q 038855 86 LIIMSASLDAR--G-FSEYFGCAKAVHV 110 (260)
Q Consensus 86 lil~SATl~~~--~-~~~~~~~~~~v~v 110 (260)
+++||||++.+ . ...|++++..+.+
T Consensus 220 ~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 220 TFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp EEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred EEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 99999999643 3 3357777665554
No 77
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=97.74 E-value=2.4e-05 Score=66.62 Aligned_cols=65 Identities=14% Similarity=0.172 Sum_probs=41.7
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCce
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLK 85 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 85 (260)
..+.++++||+|||| +..+.++...+.+.+...++ ..|
T Consensus 167 ~~~~~~~~lViDEah-~~~~~~~~~~~~~i~~~~~~-----------------------------------------~~~ 204 (236)
T 2pl3_A 167 FHATDLQMLVLDEAD-RILDMGFADTMNAVIENLPK-----------------------------------------KRQ 204 (236)
T ss_dssp CCCTTCCEEEETTHH-HHHHTTTHHHHHHHHHTSCT-----------------------------------------TSE
T ss_pred cccccccEEEEeChH-HHhcCCcHHHHHHHHHhCCC-----------------------------------------CCe
Confidence 457899999999999 34444443333332222333 678
Q ss_pred EEEEeccCCH--HHHH-hhhCCCcEEEecC
Q 038855 86 LIIMSASLDA--RGFS-EYFGCAKAVHVQG 112 (260)
Q Consensus 86 lil~SATl~~--~~~~-~~~~~~~~v~v~~ 112 (260)
+++||||++. ..+. .|+.++..+.+.+
T Consensus 205 ~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 205 TLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp EEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred EEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 9999999964 3344 4777777766654
No 78
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=97.72 E-value=2.1e-05 Score=65.07 Aligned_cols=28 Identities=18% Similarity=0.393 Sum_probs=19.9
Q ss_pred CceEEEEeccCCH--HHHH-hhhCCCcEEEe
Q 038855 83 PLKLIIMSASLDA--RGFS-EYFGCAKAVHV 110 (260)
Q Consensus 83 ~~qlil~SATl~~--~~~~-~~~~~~~~v~v 110 (260)
..|+++||||++. +.+. .|++++..+.+
T Consensus 175 ~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 175 SRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp TSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred cCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 6789999999964 3344 57777666554
No 79
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=97.70 E-value=2.7e-05 Score=66.90 Aligned_cols=65 Identities=17% Similarity=0.263 Sum_probs=41.8
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCce
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLK 85 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 85 (260)
..++++++||+||||. ..+.++...+.+.+...++ ..|
T Consensus 172 ~~~~~~~~lViDEah~-l~~~~~~~~~~~i~~~~~~-----------------------------------------~~q 209 (242)
T 3fe2_A 172 TNLRRTTYLVLDEADR-MLDMGFEPQIRKIVDQIRP-----------------------------------------DRQ 209 (242)
T ss_dssp CCCTTCCEEEETTHHH-HHHTTCHHHHHHHHTTSCS-----------------------------------------SCE
T ss_pred CCcccccEEEEeCHHH-HhhhCcHHHHHHHHHhCCc-----------------------------------------cce
Confidence 3578999999999994 3444433333332222233 679
Q ss_pred EEEEeccCCH--HHHH-hhhCCCcEEEecC
Q 038855 86 LIIMSASLDA--RGFS-EYFGCAKAVHVQG 112 (260)
Q Consensus 86 lil~SATl~~--~~~~-~~~~~~~~v~v~~ 112 (260)
+++||||++. +.+. .|+.++..+.+..
T Consensus 210 ~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 210 TLMWSATWPKEVRQLAEDFLKDYIHINIGA 239 (242)
T ss_dssp EEEEESCCCHHHHHHHHHHCSSCEEEEECC
T ss_pred EEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 9999999964 3344 5777776666654
No 80
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=97.65 E-value=2.8e-05 Score=65.59 Aligned_cols=30 Identities=23% Similarity=0.439 Sum_probs=20.9
Q ss_pred CceEEEEeccCCH--H-HHHhhhCCCcEEEecC
Q 038855 83 PLKLIIMSASLDA--R-GFSEYFGCAKAVHVQG 112 (260)
Q Consensus 83 ~~qlil~SATl~~--~-~~~~~~~~~~~v~v~~ 112 (260)
..|+++||||++. . .+.+|+.++..+.+..
T Consensus 181 ~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 181 DLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp TCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred ccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 6799999999943 2 3446888776665544
No 81
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=97.64 E-value=5.4e-05 Score=62.66 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=13.4
Q ss_pred CCCcccEEEEecCCc
Q 038855 7 YLSRYSVIIVDEAHE 21 (260)
Q Consensus 7 ~L~~~~~vIlDEahe 21 (260)
.++++++||+||||.
T Consensus 143 ~~~~~~~lViDEah~ 157 (206)
T 1vec_A 143 KVDHVQMIVLDEADK 157 (206)
T ss_dssp CCTTCCEEEEETHHH
T ss_pred CcccCCEEEEEChHH
Confidence 578999999999995
No 82
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.61 E-value=5.9e-05 Score=63.37 Aligned_cols=27 Identities=15% Similarity=0.308 Sum_probs=18.8
Q ss_pred CceEEEEeccCC--HHH-HHhhhCCCcEEE
Q 038855 83 PLKLIIMSASLD--ARG-FSEYFGCAKAVH 109 (260)
Q Consensus 83 ~~qlil~SATl~--~~~-~~~~~~~~~~v~ 109 (260)
..|+++||||++ .+. ...|++++..+.
T Consensus 190 ~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 190 EKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp SSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred cCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 679999999994 333 445787765543
No 83
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=97.57 E-value=4.8e-05 Score=65.28 Aligned_cols=28 Identities=11% Similarity=0.319 Sum_probs=18.9
Q ss_pred CceEEEEeccCCHH--H-HHhhhCCCcEEEe
Q 038855 83 PLKLIIMSASLDAR--G-FSEYFGCAKAVHV 110 (260)
Q Consensus 83 ~~qlil~SATl~~~--~-~~~~~~~~~~v~v 110 (260)
..|+++||||++.+ . +..|++++..+.+
T Consensus 204 ~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 204 SIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp TCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred CCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 67999999999643 3 3357776655544
No 84
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=97.54 E-value=4e-05 Score=65.35 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=19.6
Q ss_pred CceEEEEeccCCHH---HHHhhhCCCcEEEe
Q 038855 83 PLKLIIMSASLDAR---GFSEYFGCAKAVHV 110 (260)
Q Consensus 83 ~~qlil~SATl~~~---~~~~~~~~~~~v~v 110 (260)
..|+++||||++.+ .+..|++++..+.+
T Consensus 198 ~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 198 SKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp SCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred CCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 57899999999653 24467777655543
No 85
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=97.45 E-value=6.3e-05 Score=67.63 Aligned_cols=29 Identities=10% Similarity=0.330 Sum_probs=21.3
Q ss_pred CceEEEEeccCCH--HHHH-hhhCCCcEEEec
Q 038855 83 PLKLIIMSASLDA--RGFS-EYFGCAKAVHVQ 111 (260)
Q Consensus 83 ~~qlil~SATl~~--~~~~-~~~~~~~~v~v~ 111 (260)
..|+++||||+.. ..+. .|+.++..+.+.
T Consensus 267 ~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 267 NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp TCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred CCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 6899999999954 3444 577777777664
No 86
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=97.44 E-value=8e-05 Score=65.25 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=17.2
Q ss_pred CCCCcccEEEEecCCcCCcchhHHH
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLL 30 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll 30 (260)
..++++++||+||||. ..+.++..
T Consensus 197 ~~~~~l~~lViDEah~-l~~~~~~~ 220 (262)
T 3ly5_A 197 FMYKNLQCLVIDEADR-ILDVGFEE 220 (262)
T ss_dssp CCCTTCCEEEECSHHH-HHHTTCHH
T ss_pred cccccCCEEEEcChHH-HhhhhHHH
Confidence 4678999999999993 44444433
No 87
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.19 E-value=0.00068 Score=67.30 Aligned_cols=139 Identities=19% Similarity=0.234 Sum_probs=82.9
Q ss_pred CceEEEEeccCC-HHHHHhhhCC-CcEEEecCceeee---eEEEeeCCC-------cchHHHHHHHHHHHHhhcCCCCEE
Q 038855 83 PLKLIIMSASLD-ARGFSEYFGC-AKAVHVQGRQFPV---EILYTLYPE-------PDFLDATLITIFQVHLDEAPGDIL 150 (260)
Q Consensus 83 ~~qlil~SATl~-~~~~~~~~~~-~~~v~v~~~~~~v---~~~~~~~~~-------~~~~~~~~~~l~~i~~~~~~g~iL 150 (260)
...+|++||||. .+.+.+-+|- ...+.++.. |+- ..++....+ +.+.......+..+... .+|.+|
T Consensus 375 ~~~~il~SaTL~p~~~~~~~lGl~~~~~~~~sp-f~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~-~~g~~l 452 (620)
T 4a15_A 375 ESKTIHMSGTLDPFDFYSDITGFEIPFKKIGEI-FPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILK-VKKNTI 452 (620)
T ss_dssp GSEEEEEESSCCSHHHHHHHHCCCCCEEECCCC-SCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHH-HCSCEE
T ss_pred CCeEEEEccCCCcHHHHHHHhCCCceeeecCCC-CCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHh-CCCCEE
Confidence 345799999994 4556665554 233333322 321 122222111 12234445555555554 478899
Q ss_pred EEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC--cccccCCCCC--ceE
Q 038855 151 VFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN--IAETSVTIPG--IKY 226 (260)
Q Consensus 151 VFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd--iae~gidIp~--V~~ 226 (260)
||+|+...++.+++.++. -+.. ...+++..++.++++.|+ +..-||++|. -..-|||+|+ .+.
T Consensus 453 vlF~Sy~~l~~v~~~l~~---------~~~~---~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~ 519 (620)
T 4a15_A 453 VYFPSYSLMDRVENRVSF---------EHMK---EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEM 519 (620)
T ss_dssp EEESCHHHHHHHTSSCCS---------CCEE---CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCE
T ss_pred EEeCCHHHHHHHHHHHHh---------cchh---ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEE
Confidence 999999999888777651 1222 444555667888999998 8888999974 7888999985 778
Q ss_pred EEeCCCccce
Q 038855 227 VIDPGFVKAR 236 (260)
Q Consensus 227 VId~g~~~~~ 236 (260)
||=.|+|...
T Consensus 520 viI~~lPfp~ 529 (620)
T 4a15_A 520 IILAGLPFPR 529 (620)
T ss_dssp EEESSCCCCC
T ss_pred EEEEcCCCCC
Confidence 9989998764
No 88
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=97.11 E-value=0.00037 Score=59.88 Aligned_cols=30 Identities=10% Similarity=0.152 Sum_probs=20.5
Q ss_pred CceEEEEeccCCHH--HHH-hhhCCCcEEEecC
Q 038855 83 PLKLIIMSASLDAR--GFS-EYFGCAKAVHVQG 112 (260)
Q Consensus 83 ~~qlil~SATl~~~--~~~-~~~~~~~~v~v~~ 112 (260)
..|+++||||+..+ .+. .|+.++..+.+..
T Consensus 209 ~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 241 (253)
T 1wrb_A 209 NRQTLMFSATFPKEIQKLAADFLYNYIFMTVGR 241 (253)
T ss_dssp GCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-
T ss_pred CcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECC
Confidence 46899999999543 344 5777776666654
No 89
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=97.07 E-value=0.0054 Score=64.03 Aligned_cols=79 Identities=20% Similarity=0.178 Sum_probs=51.8
Q ss_pred eEEEEeccC--CHHHHHhhhCCCcEEEecCceeeee-E--E-EeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHH
Q 038855 85 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVE-I--L-YTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEE 158 (260)
Q Consensus 85 qlil~SATl--~~~~~~~~~~~~~~v~v~~~~~~v~-~--~-~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ 158 (260)
++..||.|. ....|.+.++ -.++.+|.. .|+. . - .+.......+.+.+..+...+.. +-++||++.+.+.
T Consensus 380 kLsGMTGTA~tE~~Ef~~iY~-l~Vv~IPTn-~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~--GqPVLVgT~SIe~ 455 (997)
T 2ipc_A 380 KRAGMTGTAKTEEKEFQEIYG-MDVVVVPTN-RPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYER--GQPVLVGTISIEK 455 (997)
T ss_dssp EEEEEESSCGGGHHHHHHHHC-CCEEECCCS-SCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHH--TCCEEEECSSHHH
T ss_pred HheecCCCchHHHHHHHHHhC-CCEEEcCCC-CCcccccCCCeEEcCHHHHHHHHHHHHHHHHHC--CCCEEEEeCCHHH
Confidence 588999998 3456777665 346777764 2321 1 1 11122334455566666655554 4679999999999
Q ss_pred HHHHHHHHH
Q 038855 159 IESVERLVQ 167 (260)
Q Consensus 159 ve~v~~~L~ 167 (260)
.|.+.+.|.
T Consensus 456 SE~LS~~L~ 464 (997)
T 2ipc_A 456 SERLSQMLK 464 (997)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999998
No 90
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=96.66 E-value=0.01 Score=57.42 Aligned_cols=139 Identities=15% Similarity=0.157 Sum_probs=86.1
Q ss_pred ceEEEEeccCC-HHHHHhhhCCC-cEE------EecCceee-eeEEEeeC--CC------cchHHHHHHHHHHHHhhcCC
Q 038855 84 LKLIIMSASLD-ARGFSEYFGCA-KAV------HVQGRQFP-VEILYTLY--PE------PDFLDATLITIFQVHLDEAP 146 (260)
Q Consensus 84 ~qlil~SATl~-~~~~~~~~~~~-~~v------~v~~~~~~-v~~~~~~~--~~------~~~~~~~~~~l~~i~~~~~~ 146 (260)
..+|++||||. .+.+.+-+|-. +.. .++. .|+ --..|+.. +. +.+.......+..+... .+
T Consensus 316 ~svIltSaTL~~~~~~~~~lGl~~~~~~~~~~~~~~s-pf~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~-~~ 393 (551)
T 3crv_A 316 LSIILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQK-RVSGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQ-AK 393 (551)
T ss_dssp CEEEEEESSCCCHHHHHHTSCCCSCEEEEEHHHHTTS-CCSCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHH-CS
T ss_pred ceEEEEeeCCCcHHHHHHHhCCCCccccccceeecCC-cCCCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHh-CC
Confidence 68999999995 45566655543 221 1111 121 01223321 11 22345555566666554 58
Q ss_pred CCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEec--CcccccCCCC--
Q 038855 147 GDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILAT--NIAETSVTIP-- 222 (260)
Q Consensus 147 g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaT--diae~gidIp-- 222 (260)
|.+|||+|+...++.+++. .+..+..=..+++.++..+.|+ ....-|++|| .-..-|||+|
T Consensus 394 g~~lvlF~Sy~~l~~v~~~------------~~~~v~~q~~~~~~~~~~~~~~---~~~~~vl~~v~gg~~~EGiD~~d~ 458 (551)
T 3crv_A 394 ANVLVVFPSYEIMDRVMSR------------ISLPKYVESEDSSVEDLYSAIS---ANNKVLIGSVGKGKLAEGIELRNN 458 (551)
T ss_dssp SEEEEEESCHHHHHHHHTT------------CCSSEEECCSSCCHHHHHHHTT---SSSSCEEEEESSCCSCCSSCCEET
T ss_pred CCEEEEecCHHHHHHHHHh------------cCCcEEEcCCCCCHHHHHHHHH---hcCCeEEEEEecceeccccccccc
Confidence 8999999999999888851 1333433333456666655554 2234799998 6788899999
Q ss_pred ---CceEEEeCCCccceeeec
Q 038855 223 ---GIKYVIDPGFVKARSYDP 240 (260)
Q Consensus 223 ---~V~~VId~g~~~~~~yd~ 240 (260)
..+.||=.|+|...- ||
T Consensus 459 ~g~~l~~viI~~lPfp~~-dp 478 (551)
T 3crv_A 459 DRSLISDVVIVGIPYPPP-DD 478 (551)
T ss_dssp TEESEEEEEEESCCCCCC-SH
T ss_pred CCcceeEEEEEcCCCCCC-CH
Confidence 389999999998766 66
No 91
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.33 E-value=0.0023 Score=52.62 Aligned_cols=28 Identities=32% Similarity=0.533 Sum_probs=15.0
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHH
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLK 34 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk 34 (260)
..+.++++||+||||.. ....+...+++
T Consensus 158 ~~~~~~~~iIiDEah~~-~~~~~~~~~~~ 185 (216)
T 3b6e_A 158 VQLSDFSLIIIDECHHT-NKEAVYNNIMR 185 (216)
T ss_dssp CCGGGCSEEEETTC--------CHHHHHH
T ss_pred cchhcccEEEEECchhh-ccCCcHHHHHH
Confidence 45789999999999953 33333333333
No 92
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=94.81 E-value=0.019 Score=50.20 Aligned_cols=16 Identities=25% Similarity=0.648 Sum_probs=13.6
Q ss_pred CCCcccEEEEecCCcC
Q 038855 7 YLSRYSVIIVDEAHER 22 (260)
Q Consensus 7 ~L~~~~~vIlDEaher 22 (260)
.+.++++||+||||..
T Consensus 222 ~~~~~~~vIiDEaH~~ 237 (282)
T 1rif_A 222 WFSQFGMMMNDECHLA 237 (282)
T ss_dssp GGGGEEEEEEETGGGC
T ss_pred HHhhCCEEEEECCccC
Confidence 4678999999999953
No 93
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.10 E-value=0.15 Score=52.09 Aligned_cols=78 Identities=12% Similarity=0.083 Sum_probs=65.7
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCc-ccccCCCCCc
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNI-AETSVTIPGI 224 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdi-ae~gidIp~V 224 (260)
+.+++|.+||++-+.+.++.+.+.+.. .++.+..+||+.+..+|.+.++....|...|+|+|+- ....+...++
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~-----~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l 491 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSK-----FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNL 491 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTC-----SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCC
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhh-----cCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCC
Confidence 578999999999999999999987643 2688999999999999999998888899999999972 2344677888
Q ss_pred eEEE
Q 038855 225 KYVI 228 (260)
Q Consensus 225 ~~VI 228 (260)
++||
T Consensus 492 ~lVV 495 (780)
T 1gm5_A 492 GLVI 495 (780)
T ss_dssp CEEE
T ss_pred ceEE
Confidence 8776
No 94
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=93.34 E-value=0.51 Score=38.93 Aligned_cols=76 Identities=16% Similarity=0.184 Sum_probs=55.7
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCc-----c-cccC
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNI-----A-ETSV 219 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdi-----a-e~gi 219 (260)
...+||.+|+++-+.++++.+++..... .++.+..++|+.+...+.+.+.. +...|+|+|+= . ...+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~----~~~~v~~~~g~~~~~~~~~~~~~---~~~~i~v~T~~~l~~~~~~~~~ 154 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYM----PNVKVAVFFGGLSIKKDEEVLKK---NCPHIVVGTPGRILALARNKSL 154 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTS----TTCCEEEESCCSCHHHHHHHHHH---SCCSEEEECHHHHHHHHHTTSS
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhC----CCceEEEEeCCCChHHHHHHHhc---CCCCEEEeCHHHHHHHHHhCCC
Confidence 3489999999999999999998864322 26789999999998776655532 44579999962 1 2345
Q ss_pred CCCCceEEE
Q 038855 220 TIPGIKYVI 228 (260)
Q Consensus 220 dIp~V~~VI 228 (260)
...++++||
T Consensus 155 ~~~~~~~lV 163 (220)
T 1t6n_A 155 NLKHIKHFI 163 (220)
T ss_dssp CCTTCCEEE
T ss_pred CcccCCEEE
Confidence 667777766
No 95
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=92.99 E-value=0.64 Score=38.92 Aligned_cols=76 Identities=11% Similarity=0.113 Sum_probs=55.6
Q ss_pred cCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcc------cc
Q 038855 144 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIA------ET 217 (260)
Q Consensus 144 ~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdia------e~ 217 (260)
.....+||.+|+++-+.++++.+++..... .++.+..++|+....++.+.+. ...|+|+|+-. ..
T Consensus 90 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~-----~~~Iiv~Tp~~l~~~~~~~ 160 (230)
T 2oxc_A 90 NLSTQILILAPTREIAVQIHSVITAIGIKM----EGLECHVFIGGTPLSQDKTRLK-----KCHIAVGSPGRIKQLIELD 160 (230)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTS----TTCCEEEECTTSCHHHHHHHTT-----SCSEEEECHHHHHHHHHTT
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHhccc----CCceEEEEeCCCCHHHHHHhcc-----CCCEEEECHHHHHHHHhcC
Confidence 345689999999999999999998864321 3678899999999888776653 35799999721 23
Q ss_pred cCCCCCceEEE
Q 038855 218 SVTIPGIKYVI 228 (260)
Q Consensus 218 gidIp~V~~VI 228 (260)
.+...++++||
T Consensus 161 ~~~~~~~~~lV 171 (230)
T 2oxc_A 161 YLNPGSIRLFI 171 (230)
T ss_dssp SSCGGGCCEEE
T ss_pred CcccccCCEEE
Confidence 44556676655
No 96
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=92.78 E-value=1.4 Score=35.57 Aligned_cols=76 Identities=8% Similarity=0.104 Sum_probs=54.2
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC-----cc-ccc
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN-----IA-ETS 218 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd-----ia-e~g 218 (260)
....+||.+|+++-++.+++.+.+..... .++.+..++|+....++...+. +...|+|+|+ .. ...
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~ 141 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHM----GGAKVMATTGGTNLRDDIMRLD----DTVHVVIATPGRILDLIKKGV 141 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTS----SSCCEEEECSSSCHHHHHHHTT----SCCSEEEECHHHHHHHHHTTC
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhc----CCceEEEEeCCccHHHHHHhcC----CCCCEEEeCHHHHHHHHHcCC
Confidence 34579999999999999999998865322 2677889999998876654442 3457999997 12 223
Q ss_pred CCCCCceEEE
Q 038855 219 VTIPGIKYVI 228 (260)
Q Consensus 219 idIp~V~~VI 228 (260)
+...++++||
T Consensus 142 ~~~~~~~~lV 151 (206)
T 1vec_A 142 AKVDHVQMIV 151 (206)
T ss_dssp SCCTTCCEEE
T ss_pred cCcccCCEEE
Confidence 4566777665
No 97
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=92.66 E-value=0.24 Score=44.99 Aligned_cols=79 Identities=9% Similarity=0.063 Sum_probs=60.8
Q ss_pred cCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCccc----ccC
Q 038855 144 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAE----TSV 219 (260)
Q Consensus 144 ~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae----~gi 219 (260)
...+.+||.+|+++-+.++++.+++... .++.+..+||+.+..++.+.+.....|...|+|+|+=.- .-+
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~------~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~ 135 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLAD------EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKL 135 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCC------SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHcc------CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHh
Confidence 4567899999999999999999988532 378899999999998777777777777788999997321 013
Q ss_pred CCCCceEEE
Q 038855 220 TIPGIKYVI 228 (260)
Q Consensus 220 dIp~V~~VI 228 (260)
...++++||
T Consensus 136 ~~~~~~~iV 144 (414)
T 3oiy_A 136 SQKRFDFVF 144 (414)
T ss_dssp TTCCCSEEE
T ss_pred ccccccEEE
Confidence 445677665
No 98
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=92.42 E-value=0.51 Score=39.87 Aligned_cols=74 Identities=18% Similarity=0.228 Sum_probs=55.8
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC-----ccc-ccC
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN-----IAE-TSV 219 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd-----iae-~gi 219 (260)
.+.+||.+|+++-+.++++.+++.... .++.+..++|+.+...+.+.+.. ...|+|+|+ ... ..+
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~ 172 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRA-----CRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKT 172 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHH-----TTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhh-----cCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCC
Confidence 567999999999999999998887543 36789999999998877666543 247999995 222 234
Q ss_pred CCCCceEEE
Q 038855 220 TIPGIKYVI 228 (260)
Q Consensus 220 dIp~V~~VI 228 (260)
.+.++++||
T Consensus 173 ~~~~~~~lV 181 (242)
T 3fe2_A 173 NLRRTTYLV 181 (242)
T ss_dssp CCTTCCEEE
T ss_pred CcccccEEE
Confidence 667777765
No 99
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=91.72 E-value=0.53 Score=49.89 Aligned_cols=79 Identities=13% Similarity=0.178 Sum_probs=65.6
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC-cccccCCCCC
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN-IAETSVTIPG 223 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd-iae~gidIp~ 223 (260)
.+.+++|.+||+.-+.+.++.+.+++.. .++.+..++|..+..++...++....|...|+|+|. +....+...+
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~-----~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~ 725 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFAN-----WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKD 725 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTT-----TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSS
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhc-----CCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccc
Confidence 4568999999999999999999887543 257889999999999999999888889999999995 4455577788
Q ss_pred ceEEE
Q 038855 224 IKYVI 228 (260)
Q Consensus 224 V~~VI 228 (260)
+++||
T Consensus 726 l~lvI 730 (1151)
T 2eyq_A 726 LGLLI 730 (1151)
T ss_dssp EEEEE
T ss_pred cceEE
Confidence 88776
No 100
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=91.55 E-value=0.77 Score=37.83 Aligned_cols=75 Identities=9% Similarity=0.096 Sum_probs=47.4
Q ss_pred cCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCc------ccc
Q 038855 144 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNI------AET 217 (260)
Q Consensus 144 ~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdi------ae~ 217 (260)
...+.+||.+|+++-+.++++.+.+.... .++.+..++|+.+..++.+.+.. ..|+|+|+- ...
T Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~-----~~iiv~Tp~~l~~~~~~~ 149 (224)
T 1qde_A 80 VKAPQALMLAPTRELALQIQKVVMALAFH-----MDIKVHACIGGTSFVEDAEGLRD-----AQIVVGTPGRVFDNIQRR 149 (224)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTT-----SCCCEEEECC----------CTT-----CSEEEECHHHHHHHHHTT
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHHhcc-----cCceEEEEeCCcchHHHHhcCCC-----CCEEEECHHHHHHHHHhC
Confidence 34568999999999999999999886432 36788999999887766554432 579999962 233
Q ss_pred cCCCCCceEEE
Q 038855 218 SVTIPGIKYVI 228 (260)
Q Consensus 218 gidIp~V~~VI 228 (260)
.+....+++||
T Consensus 150 ~~~~~~~~~iV 160 (224)
T 1qde_A 150 RFRTDKIKMFI 160 (224)
T ss_dssp SSCCTTCCEEE
T ss_pred CcchhhCcEEE
Confidence 45566777765
No 101
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=91.42 E-value=1.5 Score=37.39 Aligned_cols=78 Identities=17% Similarity=0.111 Sum_probs=56.1
Q ss_pred hhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC-----ccc
Q 038855 142 LDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN-----IAE 216 (260)
Q Consensus 142 ~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd-----iae 216 (260)
.......+||.+|+++-+..+++.+++.... .++.+..++|+.....+...+. +...|+|+|+ ...
T Consensus 107 ~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~ 177 (249)
T 3ber_A 107 ETPQRLFALVLTPTRELAFQISEQFEALGSS-----IGVQSAVIVGGIDSMSQSLALA----KKPHIIIATPGRLIDHLE 177 (249)
T ss_dssp HSCCSSCEEEECSSHHHHHHHHHHHHHHHGG-----GTCCEEEECTTSCHHHHHHHHH----TCCSEEEECHHHHHHHHH
T ss_pred cCCCCceEEEEeCCHHHHHHHHHHHHHHhcc-----CCeeEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHH
Confidence 3333567999999999999999998886532 2678889999998876655442 3457999995 222
Q ss_pred --ccCCCCCceEEE
Q 038855 217 --TSVTIPGIKYVI 228 (260)
Q Consensus 217 --~gidIp~V~~VI 228 (260)
.++...++++||
T Consensus 178 ~~~~~~l~~~~~lV 191 (249)
T 3ber_A 178 NTKGFNLRALKYLV 191 (249)
T ss_dssp HSTTCCCTTCCEEE
T ss_pred cCCCcCccccCEEE
Confidence 346677787666
No 102
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=90.77 E-value=0.99 Score=37.99 Aligned_cols=76 Identities=11% Similarity=0.093 Sum_probs=46.9
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC-----cccc-c
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN-----IAET-S 218 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd-----iae~-g 218 (260)
....+||.+|+++-+..+++.+++.... .++.+..++|+.....+.+ ....+...|+|+|+ ...+ .
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~---~l~~~~~~Ilv~Tp~~l~~~l~~~~ 168 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDY-----MGATCHACIGGTNVRNEMQ---KLQAEAPHIVVGTPGRVFDMLNRRY 168 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTT-----TTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTS
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhh-----cCceEEEEECCCchHHHHH---HHhcCCCCEEEECHHHHHHHHHhCC
Confidence 4568999999999999999999886432 2567888888876554432 33345568999994 3333 3
Q ss_pred CCCCCceEEE
Q 038855 219 VTIPGIKYVI 228 (260)
Q Consensus 219 idIp~V~~VI 228 (260)
+....+++||
T Consensus 169 ~~~~~~~~lV 178 (237)
T 3bor_A 169 LSPKWIKMFV 178 (237)
T ss_dssp SCSTTCCEEE
T ss_pred cCcccCcEEE
Confidence 5566777765
No 103
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=90.24 E-value=0.79 Score=37.08 Aligned_cols=73 Identities=12% Similarity=0.114 Sum_probs=51.9
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC-----cc-ccc
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN-----IA-ETS 218 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd-----ia-e~g 218 (260)
....+||.+|+++-+..+++.+++... .+.+..++|+.....+.+.+.. ...|+|+|+ .. ...
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~ 139 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAP-------HLKVVAVYGGTGYGKQKEALLR----GADAVVATPGRALDYLRQGV 139 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCT-------TSCEEEECSSSCSHHHHHHHHH----CCSEEEECHHHHHHHHHHTS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhh-------cceEEEEECCCChHHHHHHhhC----CCCEEEECHHHHHHHHHcCC
Confidence 356799999999999999999988642 4678889988876555444322 346999996 22 234
Q ss_pred CCCCCceEEE
Q 038855 219 VTIPGIKYVI 228 (260)
Q Consensus 219 idIp~V~~VI 228 (260)
+...++++||
T Consensus 140 ~~~~~~~~iV 149 (207)
T 2gxq_A 140 LDLSRVEVAV 149 (207)
T ss_dssp SCCTTCSEEE
T ss_pred cchhhceEEE
Confidence 5667777766
No 104
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=89.88 E-value=1.6 Score=38.49 Aligned_cols=76 Identities=14% Similarity=0.171 Sum_probs=55.4
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcc------cccC
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIA------ETSV 219 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdia------e~gi 219 (260)
...+||.+|+++-++++++.+++..... .++.+..++|+.+...+.+.+.. +...|+|+|+=. ...+
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~---~~~~iiv~T~~~l~~~~~~~~~ 148 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYM----PNVKVAVFFGGLSIKKDEEVLKK---NCPHIVVGTPGRILALARNKSL 148 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTC----TTCCEEEECTTSCHHHHHHHHHH---SCCSEEEECHHHHHHHHHTTSS
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhC----CCeEEEEEeCCCCHHHHHHHHhc---CCCCEEEECHHHHHHHHHcCCc
Confidence 5589999999999999999988865332 26789999999998877665532 445799999521 2234
Q ss_pred CCCCceEEE
Q 038855 220 TIPGIKYVI 228 (260)
Q Consensus 220 dIp~V~~VI 228 (260)
...++++||
T Consensus 149 ~~~~~~~vV 157 (391)
T 1xti_A 149 NLKHIKHFI 157 (391)
T ss_dssp CCTTCSEEE
T ss_pred cccccCEEE
Confidence 566777665
No 105
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=89.66 E-value=0.73 Score=38.25 Aligned_cols=74 Identities=20% Similarity=0.236 Sum_probs=49.0
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC------ccccc
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN------IAETS 218 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd------iae~g 218 (260)
....+||.+|+++-+.++++.+++.. ..++.+..++|+.....+.+.+.. ...|+|+|+ +....
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~----~~~iiv~Tp~~l~~~~~~~~ 162 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYS------YKGLKSICIYGGRNRNGQIEDISK----GVDIIIATPGRLNDLQMNNS 162 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHC------CTTCCEEEECC------CHHHHHS----CCSEEEECHHHHHHHHHTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhc------ccCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCC
Confidence 45679999999999999999998853 247788889998887765544422 357999995 22334
Q ss_pred CCCCCceEEE
Q 038855 219 VTIPGIKYVI 228 (260)
Q Consensus 219 idIp~V~~VI 228 (260)
+...++++||
T Consensus 163 ~~~~~~~~lV 172 (228)
T 3iuy_A 163 VNLRSITYLV 172 (228)
T ss_dssp CCCTTCCEEE
T ss_pred cCcccceEEE
Confidence 5667777765
No 106
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=88.80 E-value=1.1 Score=37.07 Aligned_cols=79 Identities=8% Similarity=0.111 Sum_probs=52.9
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC-----cccc-c
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN-----IAET-S 218 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd-----iae~-g 218 (260)
....+||.+|+++-+.++++.+++.....+. ..++.+..++|+.+...+.+.+ . ....|+|+|+ ...+ .
T Consensus 71 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~---~-~~~~Iiv~Tp~~l~~~l~~~~ 145 (219)
T 1q0u_A 71 AEVQAVITAPTRELATQIYHETLKITKFCPK-DRMIVARCLIGGTDKQKALEKL---N-VQPHIVIGTPGRINDFIREQA 145 (219)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSCG-GGCCCEEEECCCSHHHHTTCCC---S-SCCSEEEECHHHHHHHHHTTC
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhhhccc-ccceEEEEEeCCCCHHHHHHHc---C-CCCCEEEeCHHHHHHHHHcCC
Confidence 3568999999999999999999887643221 1257788899988766543322 2 3457999995 2222 3
Q ss_pred CCCCCceEEE
Q 038855 219 VTIPGIKYVI 228 (260)
Q Consensus 219 idIp~V~~VI 228 (260)
+....+++||
T Consensus 146 ~~~~~~~~lV 155 (219)
T 1q0u_A 146 LDVHTAHILV 155 (219)
T ss_dssp CCGGGCCEEE
T ss_pred CCcCcceEEE
Confidence 4455666655
No 107
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=88.73 E-value=0.94 Score=44.41 Aligned_cols=60 Identities=18% Similarity=0.073 Sum_probs=52.6
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhccc--CCCCeEEEEecC
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPA--AAGFRKVILATN 213 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~--~~g~~kVlvaTd 213 (260)
.++.+||.+|+++-+....+.|.+. ++.+..++|+++..++..++... ..+..+|+++|+
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~---------gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQL---------GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHH---------TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhc---------CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 3678999999999999999998885 78899999999999988887766 567889999998
No 108
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=88.18 E-value=1.8 Score=36.55 Aligned_cols=73 Identities=14% Similarity=0.159 Sum_probs=53.0
Q ss_pred CCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCc------ccccCC
Q 038855 147 GDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNI------AETSVT 220 (260)
Q Consensus 147 g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdi------ae~gid 220 (260)
..+||.+|+++-+..+++.+++.... .++.+..++|+.....+.+.+. ....|+|+|+- ....+.
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~ 171 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLN-----TPLRSCVVYGGADTHSQIREVQ----MGCHLLVATPGRLVDFIEKNKIS 171 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTT-----SSCCEEEECSSSCSHHHHHHHS----SCCSEEEECHHHHHHHHHTTSBC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhcc-----CCceEEEEECCCCHHHHHHHhC----CCCCEEEECHHHHHHHHHcCCCC
Confidence 58999999999999999999886432 3577888999888766655442 24579999972 122356
Q ss_pred CCCceEEE
Q 038855 221 IPGIKYVI 228 (260)
Q Consensus 221 Ip~V~~VI 228 (260)
..++++||
T Consensus 172 ~~~~~~lV 179 (253)
T 1wrb_A 172 LEFCKYIV 179 (253)
T ss_dssp CTTCCEEE
T ss_pred hhhCCEEE
Confidence 67777766
No 109
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=88.02 E-value=3 Score=35.82 Aligned_cols=75 Identities=11% Similarity=0.136 Sum_probs=54.8
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC-----cccc--
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN-----IAET-- 217 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd-----iae~-- 217 (260)
.+..+||.+|+++-+.++++.+++.+.. .+..+..++|+.....+...+.. + ..|+|+|+ ...+
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~---~-~~Iiv~Tp~~l~~~~~~~~ 195 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTH-----HVHTYGLIMGGSNRSAEAQKLGN---G-INIIVATPGRLLDHMQNTP 195 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTT-----CCSCEEEECSSSCHHHHHHHHHH---C-CSEEEECHHHHHHHHHHCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhh-----cCceEEEEECCCCHHHHHHHhcC---C-CCEEEEcHHHHHHHHHccC
Confidence 3567999999999999999999987543 35678889998887766554432 2 57999994 2222
Q ss_pred cCCCCCceEEE
Q 038855 218 SVTIPGIKYVI 228 (260)
Q Consensus 218 gidIp~V~~VI 228 (260)
++...++++||
T Consensus 196 ~~~~~~l~~lV 206 (262)
T 3ly5_A 196 GFMYKNLQCLV 206 (262)
T ss_dssp TCCCTTCCEEE
T ss_pred CcccccCCEEE
Confidence 35677788765
No 110
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=87.95 E-value=4.6 Score=35.94 Aligned_cols=73 Identities=14% Similarity=0.154 Sum_probs=53.7
Q ss_pred CCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC-----cccc-cCC
Q 038855 147 GDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN-----IAET-SVT 220 (260)
Q Consensus 147 g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd-----iae~-gid 220 (260)
..+||.+|+++-+.++++.+++.... .++.+..++|+....++.+.+. ....|+|+|+ ...+ .+.
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~ 172 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYR-----SRVRPCVVYGGADIGQQIRDLE----RGCHLLVATPGRLVDMMERGKIG 172 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTT-----SSCCEEEECSSSCHHHHHHHHT----TCCSEEEECHHHHHHHHHTTSBC
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCc-----CCceEEEEECCCCHHHHHHHhh----CCCCEEEEChHHHHHHHHcCCcC
Confidence 57999999999999999999886532 3678899999998887665543 2347999997 2222 245
Q ss_pred CCCceEEE
Q 038855 221 IPGIKYVI 228 (260)
Q Consensus 221 Ip~V~~VI 228 (260)
...+++||
T Consensus 173 ~~~~~~iV 180 (417)
T 2i4i_A 173 LDFCKYLV 180 (417)
T ss_dssp CTTCCEEE
T ss_pred hhhCcEEE
Confidence 66777666
No 111
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=87.53 E-value=1.6 Score=36.32 Aligned_cols=73 Identities=7% Similarity=0.050 Sum_probs=51.4
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCc-----ccc--c
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNI-----AET--S 218 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdi-----ae~--g 218 (260)
...+||.+|+++-+..+++.+++.... .++.+..++|+.+...+.+.+. ...|+|+|+- ..+ .
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~-----~~~iiv~Tp~~l~~~l~~~~~ 166 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKN-----HDFSAGLIIGGKDLKHEAERIN-----NINILVCTPGRLLQHMDETVS 166 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTT-----SSCCEEEECCC--CHHHHHHHT-----TCSEEEECHHHHHHHHHHCSS
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCC-----CCeeEEEEECCCCHHHHHHhCC-----CCCEEEECHHHHHHHHHhcCC
Confidence 567999999999999999999886432 3578889999988766655542 4579999961 222 3
Q ss_pred CCCCCceEEE
Q 038855 219 VTIPGIKYVI 228 (260)
Q Consensus 219 idIp~V~~VI 228 (260)
+...++++||
T Consensus 167 ~~~~~~~~lV 176 (236)
T 2pl3_A 167 FHATDLQMLV 176 (236)
T ss_dssp CCCTTCCEEE
T ss_pred cccccccEEE
Confidence 5566777665
No 112
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=86.99 E-value=4.5 Score=35.00 Aligned_cols=75 Identities=13% Similarity=0.191 Sum_probs=54.1
Q ss_pred cCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcc------cc
Q 038855 144 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIA------ET 217 (260)
Q Consensus 144 ~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdia------e~ 217 (260)
.....+||.+|+++-++.+++.+.+.... .++.+..++|+.....+.+.+. ...|+|+|+-. ..
T Consensus 72 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv~T~~~l~~~~~~~ 141 (367)
T 1hv8_A 72 NNGIEAIILTPTRELAIQVADEIESLKGN-----KNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDHINRG 141 (367)
T ss_dssp SSSCCEEEECSCHHHHHHHHHHHHHHHCS-----SCCCEEEECTTSCHHHHHHHHH-----TCSEEEECHHHHHHHHHTT
T ss_pred cCCCcEEEEcCCHHHHHHHHHHHHHHhCC-----CCceEEEEECCcchHHHHhhcC-----CCCEEEecHHHHHHHHHcC
Confidence 34668999999999999999999887542 3677889999998877665554 34699999621 12
Q ss_pred cCCCCCceEEE
Q 038855 218 SVTIPGIKYVI 228 (260)
Q Consensus 218 gidIp~V~~VI 228 (260)
.+...++++||
T Consensus 142 ~~~~~~~~~iI 152 (367)
T 1hv8_A 142 TLNLKNVKYFI 152 (367)
T ss_dssp CSCTTSCCEEE
T ss_pred CcccccCCEEE
Confidence 24456666665
No 113
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=86.88 E-value=3 Score=36.77 Aligned_cols=74 Identities=9% Similarity=0.086 Sum_probs=53.6
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcc------ccc
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIA------ETS 218 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdia------e~g 218 (260)
..+++||.+|+++-+.++++.+.+.... .++.+..++|+....++...+. ...|+|+|+=. ...
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~ 157 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFH-----MDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRR 157 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTT-----SCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTS
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhcc-----CCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCC
Confidence 4568999999999999999998886432 3678899999999877766554 24699998421 223
Q ss_pred CCCCCceEEE
Q 038855 219 VTIPGIKYVI 228 (260)
Q Consensus 219 idIp~V~~VI 228 (260)
+...++++||
T Consensus 158 ~~~~~~~~vI 167 (394)
T 1fuu_A 158 FRTDKIKMFI 167 (394)
T ss_dssp SCCTTCCEEE
T ss_pred cchhhCcEEE
Confidence 4455666655
No 114
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=86.24 E-value=4.6 Score=35.81 Aligned_cols=75 Identities=8% Similarity=0.065 Sum_probs=54.0
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC-----ccc-cc
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN-----IAE-TS 218 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd-----iae-~g 218 (260)
....+||.+|+++-++++++.+++.... .++.+..++|+.....+...+ .+...|+|+|+ ... ..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~~~~~~ 158 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKH-----CGISCMVTTGGTNLRDDILRL----NETVHILVGTPGRVLDLASRKV 158 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTT-----TTCCEEEECSSSCHHHHHHHT----TSCCSEEEECHHHHHHHHHTTC
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcc-----cCceEEEEeCCcchHHHHHHh----cCCCCEEEEchHHHHHHHHhCC
Confidence 4568999999999999999999887532 267788899998876654433 24557999995 223 33
Q ss_pred CCCCCceEEE
Q 038855 219 VTIPGIKYVI 228 (260)
Q Consensus 219 idIp~V~~VI 228 (260)
....++++||
T Consensus 159 ~~~~~~~~vI 168 (400)
T 1s2m_A 159 ADLSDCSLFI 168 (400)
T ss_dssp SCCTTCCEEE
T ss_pred cccccCCEEE
Confidence 5667777765
No 115
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=85.25 E-value=4.7 Score=37.18 Aligned_cols=74 Identities=11% Similarity=0.142 Sum_probs=54.7
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC-----cccc-cC
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN-----IAET-SV 219 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd-----iae~-gi 219 (260)
...+||.+||++-+.++++.+++.... .++.+..++|+.+...+.+.+. ....|+|+|+ ...+ .+
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~-----~~~~~~~~~gg~~~~~~~~~l~----~~~~Ivv~Tp~~l~~~l~~~~~ 199 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFE-----SYLKIGIVYGGTSFRHQNECIT----RGCHVVIATPGRLLDFVDRTFI 199 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTT-----SSCCCCEECTTSCHHHHHHHHT----TCCSEEEECHHHHHHHHHTTSC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhcc-----CCcEEEEEECCCCHHHHHHHhh----cCCCEEEEChHHHHHHHHhCCc
Confidence 458999999999999999999886432 3577888999999887766553 2357999995 2233 34
Q ss_pred CCCCceEEE
Q 038855 220 TIPGIKYVI 228 (260)
Q Consensus 220 dIp~V~~VI 228 (260)
....+++||
T Consensus 200 ~l~~~~~lV 208 (434)
T 2db3_A 200 TFEDTRFVV 208 (434)
T ss_dssp CCTTCCEEE
T ss_pred ccccCCeEE
Confidence 567777776
No 116
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=85.16 E-value=4.5 Score=35.96 Aligned_cols=75 Identities=15% Similarity=0.202 Sum_probs=54.6
Q ss_pred cCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcc------cc
Q 038855 144 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIA------ET 217 (260)
Q Consensus 144 ~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdia------e~ 217 (260)
...+++||.+|+++-++...+.+.+.+. .....+..+||+....++...... ..|+|+|.=. ..
T Consensus 50 ~~~~~~liv~P~~~L~~q~~~~~~~~~~-----~~~~~v~~~~g~~~~~~~~~~~~~-----~~ivv~T~~~l~~~~~~~ 119 (494)
T 1wp9_A 50 KYGGKVLMLAPTKPLVLQHAESFRRLFN-----LPPEKIVALTGEKSPEERSKAWAR-----AKVIVATPQTIENDLLAG 119 (494)
T ss_dssp HSCSCEEEECSSHHHHHHHHHHHHHHBC-----SCGGGEEEECSCSCHHHHHHHHHH-----CSEEEECHHHHHHHHHTT
T ss_pred cCCCeEEEEECCHHHHHHHHHHHHHHhC-----cchhheEEeeCCcchhhhhhhccC-----CCEEEecHHHHHHHHhcC
Confidence 3577999999999999999999988641 123489999999998887766543 4699988521 12
Q ss_pred cCCCCCceEEE
Q 038855 218 SVTIPGIKYVI 228 (260)
Q Consensus 218 gidIp~V~~VI 228 (260)
.+...++++||
T Consensus 120 ~~~~~~~~~vI 130 (494)
T 1wp9_A 120 RISLEDVSLIV 130 (494)
T ss_dssp SCCTTSCSEEE
T ss_pred CcchhhceEEE
Confidence 35566777666
No 117
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=84.85 E-value=1.1 Score=43.10 Aligned_cols=59 Identities=15% Similarity=0.141 Sum_probs=52.2
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN 213 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd 213 (260)
++.+||.+|+++-+....+.|++. ++.+..+||+.+..++..++.....|..+|+++|+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~---------gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQAN---------GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 578999999999999988888873 78899999999999988888888788889999996
No 118
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=84.23 E-value=3.1 Score=35.72 Aligned_cols=73 Identities=14% Similarity=0.179 Sum_probs=52.7
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCc------ccccC
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNI------AETSV 219 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdi------ae~gi 219 (260)
..++||.+|+++-+.++++.+++.... .+..+..+||+.+...+...+.. ..|+|+|+- ....+
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-----~~i~v~T~~~l~~~~~~~~~ 125 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRY-----MDTKVAEVYGGMPYKAQINRVRN-----ADIVVATPGRLLDLWSKGVI 125 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTT-----SCCCEEEECTTSCHHHHHHHHTT-----CSEEEECHHHHHHHHHTTSC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhh-----cCCcEEEEECCcchHHHHhhcCC-----CCEEEECHHHHHHHHHcCCc
Confidence 578999999999999999999876422 25678899999998876665542 469999952 12233
Q ss_pred CCCCceEEE
Q 038855 220 TIPGIKYVI 228 (260)
Q Consensus 220 dIp~V~~VI 228 (260)
...++++||
T Consensus 126 ~~~~~~~iV 134 (337)
T 2z0m_A 126 DLSSFEIVI 134 (337)
T ss_dssp CGGGCSEEE
T ss_pred chhhCcEEE
Confidence 455666655
No 119
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=83.58 E-value=1.4 Score=46.49 Aligned_cols=78 Identities=10% Similarity=0.114 Sum_probs=60.2
Q ss_pred cCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCc-----cccc
Q 038855 144 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNI-----AETS 218 (260)
Q Consensus 144 ~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdi-----ae~g 218 (260)
...+.+||.+|+++-+.++++.++++. ..++.+..+||+.+..+|.+.......|...|+|+|+= .++
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~------~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~- 191 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLA------DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK- 191 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTS------CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhh------CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-
Confidence 456789999999999999999988832 24789999999999877777777777787889999962 111
Q ss_pred CCCCCceEEE
Q 038855 219 VTIPGIKYVI 228 (260)
Q Consensus 219 idIp~V~~VI 228 (260)
+...++++||
T Consensus 192 l~~~~l~~lV 201 (1104)
T 4ddu_A 192 LSQKRFDFVF 201 (1104)
T ss_dssp HHTSCCSEEE
T ss_pred hcccCcCEEE
Confidence 3345777765
No 120
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=82.87 E-value=4.7 Score=33.62 Aligned_cols=75 Identities=9% Similarity=0.165 Sum_probs=50.6
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC-----cccc---
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN-----IAET--- 217 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd-----iae~--- 217 (260)
...+||.+|+++-+.++++.+++.... .++.+..++|+..... .+.....+...|+|+|+ ...+
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~ 169 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEG-----TGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPP 169 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTT-----SCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSC
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcc-----cCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCC
Confidence 347999999999999999999887532 3567777776543322 22333445678999994 2222
Q ss_pred cCCCCCceEEE
Q 038855 218 SVTIPGIKYVI 228 (260)
Q Consensus 218 gidIp~V~~VI 228 (260)
.++..++++||
T Consensus 170 ~~~~~~~~~lV 180 (245)
T 3dkp_A 170 GIDLASVEWLV 180 (245)
T ss_dssp SCCCTTCCEEE
T ss_pred CcccccCcEEE
Confidence 46777888765
No 121
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=81.53 E-value=6.7 Score=34.97 Aligned_cols=75 Identities=9% Similarity=0.069 Sum_probs=54.2
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC-----cccc-c
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN-----IAET-S 218 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd-----iae~-g 218 (260)
..+++||.+|+++-+.++++.+.+.... .++.+..++|+....++.+.+.. ...|+|+|+ ...+ .
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~----~~~ivv~Tp~~l~~~l~~~~ 174 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDY-----MNVQCHACIGGTNVGEDIRKLDY----GQHVVAGTPGRVFDMIRRRS 174 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTT-----TTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHTTS
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhcc-----CCeEEEEEECCCCHHHHHHHhhc----CCCEEEcCHHHHHHHHHhCC
Confidence 4678999999999999999998886322 36778889999988776655432 237999995 3333 3
Q ss_pred CCCCCceEEE
Q 038855 219 VTIPGIKYVI 228 (260)
Q Consensus 219 idIp~V~~VI 228 (260)
+....+++||
T Consensus 175 ~~~~~~~~vV 184 (410)
T 2j0s_A 175 LRTRAIKMLV 184 (410)
T ss_dssp SCCTTCCEEE
T ss_pred ccHhheeEEE
Confidence 5556677665
No 122
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=81.27 E-value=11 Score=33.41 Aligned_cols=76 Identities=11% Similarity=0.079 Sum_probs=53.9
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC-----cccc-c
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN-----IAET-S 218 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd-----iae~-g 218 (260)
..+.+||.+|+++-+.++++.+++.... .+..+..++|+.....+...+ ..+...|+|+|+ ...+ .
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiv~T~~~l~~~l~~~~ 178 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDY-----MGASCHACIGGTNVRAEVQKL---QMEAPHIIVGTPGRVFDMLNRRY 178 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGG-----SCCCEEECCCCTTHHHHHHHH---TTTCCSEEEECHHHHHHHHHHTS
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcc-----cCceEEEEECCcchHHHHHHH---hcCCCCEEEECHHHHHHHHHcCC
Confidence 4678999999999999999999886432 366788888888776654443 335568999995 2222 3
Q ss_pred CCCCCceEEE
Q 038855 219 VTIPGIKYVI 228 (260)
Q Consensus 219 idIp~V~~VI 228 (260)
+....+++||
T Consensus 179 ~~~~~~~~vV 188 (414)
T 3eiq_A 179 LSPKYIKMFV 188 (414)
T ss_dssp SCSTTCCEEE
T ss_pred cccccCcEEE
Confidence 4556676654
No 123
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=80.99 E-value=2.7 Score=38.85 Aligned_cols=74 Identities=9% Similarity=0.130 Sum_probs=51.5
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcc-----ccc-C
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIA-----ETS-V 219 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdia-----e~g-i 219 (260)
.+.+||.+|+++-+....+.+++.+.. .++.+..+||+.+...+...+. +...|+|+|+=. ..+ +
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~ 122 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFER-----LGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAI 122 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHT-----TTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhcc-----CCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCcc
Confidence 678999999999999999999887653 2778999999997665433322 134699998522 222 2
Q ss_pred -CCCCceEEE
Q 038855 220 -TIPGIKYVI 228 (260)
Q Consensus 220 -dIp~V~~VI 228 (260)
...++++||
T Consensus 123 ~~~~~~~~vV 132 (555)
T 3tbk_A 123 PSLSVFTLMI 132 (555)
T ss_dssp CCGGGCSEEE
T ss_pred cccccCCEEE
Confidence 455666655
No 124
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=79.15 E-value=4 Score=37.84 Aligned_cols=74 Identities=11% Similarity=0.098 Sum_probs=48.9
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcc-----ccc-C
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIA-----ETS-V 219 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdia-----e~g-i 219 (260)
.+.+||.+|+++-+....+.+.+.+.. .++.+..+||+.+...+...+.. ...|+|+|+=. .++ +
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~ 125 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFER-----QGYSVQGISGENFSNVSVEKVIE----DSDIIVVTPQILVNSFEDGTL 125 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGG-----GTCCEEECCCC-----CHHHHHH----HCSEEEECHHHHHHHHHSSSC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcc-----cCceEEEEeCCCCcchhHHHhhC----CCCEEEECHHHHHHHHHhCcc
Confidence 678999999999999999999887643 27789999999977654433321 24699998632 222 3
Q ss_pred -CCCCceEEE
Q 038855 220 -TIPGIKYVI 228 (260)
Q Consensus 220 -dIp~V~~VI 228 (260)
...++++||
T Consensus 126 ~~~~~~~~vV 135 (556)
T 4a2p_A 126 TSLSIFTLMI 135 (556)
T ss_dssp CCSTTCSEEE
T ss_pred cccccCCEEE
Confidence 566777655
No 125
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=78.54 E-value=3.6 Score=36.26 Aligned_cols=72 Identities=10% Similarity=-0.011 Sum_probs=49.4
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcc------c-cc
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIA------E-TS 218 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdia------e-~g 218 (260)
...+||.+||++-+.++++.++.+.... .++.+..++|+.....+ ......|+|+|+=. . ..
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~ 230 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFY----PELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKF 230 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTS----TTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhC----CCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCC
Confidence 4479999999999999999988864322 35677777776653321 12345799999732 1 35
Q ss_pred CCCCCceEEE
Q 038855 219 VTIPGIKYVI 228 (260)
Q Consensus 219 idIp~V~~VI 228 (260)
+++.++++||
T Consensus 231 ~~l~~l~~lV 240 (300)
T 3fmo_B 231 IDPKKIKVFV 240 (300)
T ss_dssp CCGGGCSEEE
T ss_pred CChhhceEEE
Confidence 6677888766
No 126
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=77.03 E-value=4.9 Score=42.05 Aligned_cols=77 Identities=5% Similarity=0.092 Sum_probs=56.6
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCe----EEEEecCCCCHHHHHHHhcccCCCCeEEEEecCc-ccccC
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKL----VTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNI-AETSV 219 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~----~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdi-ae~gi 219 (260)
..+.+||.+|+++-+.++++.+++..... ++ .+..+||+.+..+|.+..+.... ..|+|+|+= +-.-+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~-----~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l 170 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKA-----GVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHY 170 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTT-----CCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCS
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhc-----CCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHH
Confidence 46789999999999999999999876432 45 78999999999887766666654 789999971 11111
Q ss_pred C-CCCceEEE
Q 038855 220 T-IPGIKYVI 228 (260)
Q Consensus 220 d-Ip~V~~VI 228 (260)
. +.++++||
T Consensus 171 ~~L~~l~~lV 180 (1054)
T 1gku_B 171 RELGHFDFIF 180 (1054)
T ss_dssp TTSCCCSEEE
T ss_pred HHhccCCEEE
Confidence 1 44666665
No 127
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=73.71 E-value=7 Score=39.10 Aligned_cols=74 Identities=11% Similarity=0.090 Sum_probs=49.0
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCc-----cccc-C
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNI-----AETS-V 219 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdi-----ae~g-i 219 (260)
++++||.+|+++-+....+.+++.+.. .++.+..+||+.+...+...+. +...|+|+|+= ..++ +
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~-----~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~ 366 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFER-----QGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTL 366 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGG-----GTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhccc-----CCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhccc
Confidence 678999999999999999999887643 2788999999997766433332 23469999942 2222 3
Q ss_pred -CCCCceEEE
Q 038855 220 -TIPGIKYVI 228 (260)
Q Consensus 220 -dIp~V~~VI 228 (260)
...++++||
T Consensus 367 ~~~~~~~~iV 376 (797)
T 4a2q_A 367 TSLSIFTLMI 376 (797)
T ss_dssp CCGGGCSEEE
T ss_pred cccccCCEEE
Confidence 455667665
No 128
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=68.54 E-value=2.5 Score=41.59 Aligned_cols=13 Identities=31% Similarity=0.680 Sum_probs=11.3
Q ss_pred CcccEEEEecCCc
Q 038855 9 SRYSVIIVDEAHE 21 (260)
Q Consensus 9 ~~~~~vIlDEahe 21 (260)
.++++||+||||.
T Consensus 191 ~~~~~vI~DEaH~ 203 (644)
T 1z3i_X 191 GKVGLVICDEGHR 203 (644)
T ss_dssp SCCCEEEETTGGG
T ss_pred CCccEEEEECcee
Confidence 4788999999995
No 129
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=65.06 E-value=8.3 Score=30.82 Aligned_cols=58 Identities=14% Similarity=0.179 Sum_probs=37.3
Q ss_pred CCCEEEEeCCHHHHHH-HHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC
Q 038855 146 PGDILVFLTGQEEIES-VERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN 213 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~-v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd 213 (260)
.+.+||.+|+++-++. +.+.+..... .++.+..++|+.....+...+. ....|+|+|+
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~------~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLK------KWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHT------TTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhc------cCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 6789999999999888 6677776543 2577888888765433221111 1346888885
No 130
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=62.33 E-value=32 Score=29.77 Aligned_cols=71 Identities=17% Similarity=0.105 Sum_probs=47.8
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcc------ccc
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIA------ETS 218 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdia------e~g 218 (260)
..+.+||.+|+++-+.++++.+++.... .++.+..++++..... ......|+|+|+-. ...
T Consensus 74 ~~~~~lil~P~~~L~~q~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--------~~~~~~iiv~T~~~l~~~~~~~~ 140 (395)
T 3pey_A 74 ASPQAICLAPSRELARQTLEVVQEMGKF-----TKITSQLIVPDSFEKN--------KQINAQVIVGTPGTVLDLMRRKL 140 (395)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTT-----SCCCEEEESTTSSCTT--------SCBCCSEEEECHHHHHHHHHTTC
T ss_pred CCccEEEECCCHHHHHHHHHHHHHHhcc-----cCeeEEEEecCchhhh--------ccCCCCEEEEcHHHHHHHHHcCC
Confidence 4668999999999999999999886422 3566666776543221 22346799999632 334
Q ss_pred CCCCCceEEE
Q 038855 219 VTIPGIKYVI 228 (260)
Q Consensus 219 idIp~V~~VI 228 (260)
+...++++||
T Consensus 141 ~~~~~~~~iI 150 (395)
T 3pey_A 141 MQLQKIKIFV 150 (395)
T ss_dssp BCCTTCCEEE
T ss_pred cccccCCEEE
Confidence 5667777765
No 131
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=60.29 E-value=13 Score=35.91 Aligned_cols=73 Identities=10% Similarity=0.150 Sum_probs=50.3
Q ss_pred CCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCc-----cccc-C-
Q 038855 147 GDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNI-----AETS-V- 219 (260)
Q Consensus 147 g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdi-----ae~g-i- 219 (260)
+++||.+|+++-+....+.+++.+.. .++.+..++|+.+...+...+. ....|+|+|+= ..++ +
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~-----~~~~v~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~L~~~l~~~~~~ 132 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFER-----HGYRVTGISGATAENVPVEQIV----ENNDIIILTPQILVNNLKKGTIP 132 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTT-----TTCCEEEECSSSCSSSCHHHHH----HTCSEEEECHHHHHHHHHTTSSC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhcc-----CCceEEEEeCCccccccHHHhc----cCCCEEEECHHHHHHHHhcCccc
Confidence 78999999999999999998887532 3788999999986543322221 13579999962 2222 3
Q ss_pred CCCCceEEE
Q 038855 220 TIPGIKYVI 228 (260)
Q Consensus 220 dIp~V~~VI 228 (260)
...++++||
T Consensus 133 ~l~~~~~vV 141 (696)
T 2ykg_A 133 SLSIFTLMI 141 (696)
T ss_dssp CGGGCSEEE
T ss_pred ccccccEEE
Confidence 456677765
No 132
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=59.28 E-value=11 Score=38.76 Aligned_cols=59 Identities=10% Similarity=0.064 Sum_probs=41.3
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN 213 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd 213 (260)
++++||.+|+++-+....+.+++.+.. .++.+..+||+.+...+...+. +...|+|+|+
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~-----~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp 354 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFER-----QGYSVQGISGENFSNVSVEKVI----EDSDIIVVTP 354 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHT-----TTCCEEEECCC-----CCHHHH----HHCSEEEECH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcc-----cCceEEEEECCcchhhHHHHhc----cCCCEEEecH
Confidence 678999999999999999999887643 2788999999997665433322 1346999984
No 133
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=57.37 E-value=37 Score=29.75 Aligned_cols=73 Identities=10% Similarity=-0.020 Sum_probs=47.5
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCccc-------c
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAE-------T 217 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae-------~ 217 (260)
..+.+||.+|+++-+.++++.+++..... .++.+...+++..... .......|+|+|+-.- .
T Consensus 94 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-------~~~~~~~ivv~T~~~l~~~~~~~~ 162 (412)
T 3fht_A 94 KYPQCLCLSPTYELALQTGKVIEQMGKFY----PELKLAYAVRGNKLER-------GQKISEQIVIGTPGTVLDWCSKLK 162 (412)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTS----TTCCEEEECTTCCCCT-------TCCCCCSEEEECHHHHHHHHTTSC
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHhhc----ccceEEEeecCcchhh-------hhcCCCCEEEECchHHHHHHHhcC
Confidence 34589999999999999999988864322 2556666666654321 1234457999996221 2
Q ss_pred cCCCCCceEEE
Q 038855 218 SVTIPGIKYVI 228 (260)
Q Consensus 218 gidIp~V~~VI 228 (260)
.+...++++||
T Consensus 163 ~~~~~~~~~iV 173 (412)
T 3fht_A 163 FIDPKKIKVFV 173 (412)
T ss_dssp SSCGGGCCEEE
T ss_pred CcChhhCcEEE
Confidence 44556677755
No 134
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=56.84 E-value=29 Score=35.99 Aligned_cols=58 Identities=9% Similarity=0.027 Sum_probs=46.5
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN 213 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd 213 (260)
.+..++|-+||++=+...++.+...... -++.+..+.|+++.++|.... ...|+++|+
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~-----lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTp 171 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEF-----LGLTVGINLPGMPAPAKREAY------AADITYGTN 171 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHH-----TTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHh-----cCCeEEEEeCCCCHHHHHHhc------CCCEEEECC
Confidence 3457999999999999988888876543 278999999999988776554 246999997
No 135
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=56.72 E-value=13 Score=33.73 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=19.3
Q ss_pred cccEEEEecCCcCCcchhHHHHHHHHH
Q 038855 10 RYSVIIVDEAHERTVHTDVLLGLLKKV 36 (260)
Q Consensus 10 ~~~~vIlDEaher~~~~d~ll~~lk~~ 36 (260)
...+|||||+|.-. ..++|..++...
T Consensus 132 ~~~ii~lDE~d~l~-~q~~L~~l~~~~ 157 (318)
T 3te6_A 132 RKTLILIQNPENLL-SEKILQYFEKWI 157 (318)
T ss_dssp CEEEEEEECCSSSC-CTHHHHHHHHHH
T ss_pred CceEEEEecHHHhh-cchHHHHHHhcc
Confidence 45689999999544 778888777643
No 136
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=56.57 E-value=42 Score=34.74 Aligned_cols=57 Identities=11% Similarity=0.073 Sum_probs=46.5
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN 213 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd 213 (260)
+..++|.+||++=+...++.+...... -++.+..+.|+++.++|..... ..|+++||
T Consensus 124 g~~vlVltptreLA~qd~e~~~~l~~~-----lgl~v~~i~gg~~~~~r~~~~~------~dIv~gTp 180 (844)
T 1tf5_A 124 GKGVHVVTVNEYLASRDAEQMGKIFEF-----LGLTVGLNLNSMSKDEKREAYA------ADITYSTN 180 (844)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHHHHH-----TTCCEEECCTTSCHHHHHHHHH------SSEEEEEH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhh-----cCCeEEEEeCCCCHHHHHHhcC------CCEEEECc
Confidence 457999999999999998888876543 3789999999999888776542 36999997
No 137
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=53.35 E-value=7.7 Score=37.57 Aligned_cols=73 Identities=14% Similarity=0.217 Sum_probs=47.7
Q ss_pred CCCEEEEeCCHHHHHHH-HHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcc---------
Q 038855 146 PGDILVFLTGQEEIESV-ERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIA--------- 215 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v-~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdia--------- 215 (260)
++.+||.+|+++=+... .+.+.+.+.. .+.+..+||+....++...+. +...|+|+|+=.
T Consensus 56 ~~~vlvl~P~~~L~~Q~~~~~l~~~~~~------~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~ 125 (699)
T 4gl2_A 56 PGKVIVLVNKVLLVEQLFRKEFQPFLKK------WYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLE 125 (699)
T ss_dssp CCCBCCEESCSHHHHHHHHHTHHHHHTT------TSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC---
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHHcCc------CceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccc
Confidence 48899999999999998 8989887532 488999999987665433332 345788888522
Q ss_pred ---cccCCCCCceEEE
Q 038855 216 ---ETSVTIPGIKYVI 228 (260)
Q Consensus 216 ---e~gidIp~V~~VI 228 (260)
...+...++++||
T Consensus 126 ~~~~~~~~~~~~~lvV 141 (699)
T 4gl2_A 126 NGEDAGVQLSDFSLII 141 (699)
T ss_dssp -----CCCGGGCSEEE
T ss_pred cccccceecccCcEEE
Confidence 1224556777765
No 138
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=51.40 E-value=23 Score=27.92 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=16.4
Q ss_pred CCcccEEEEecCCcCCcchhHHHHHHHHH
Q 038855 8 LSRYSVIIVDEAHERTVHTDVLLGLLKKV 36 (260)
Q Consensus 8 L~~~~~vIlDEaher~~~~d~ll~~lk~~ 36 (260)
..+-.+|||||+|. +..+.+..+++.+
T Consensus 124 ~~~~~vlviDe~~~--l~~~~~~~l~~~l 150 (250)
T 1njg_A 124 RGRFKVYLIDEVHM--LSRHSFNALLKTL 150 (250)
T ss_dssp SSSSEEEEEETGGG--SCHHHHHHHHHHH
T ss_pred cCCceEEEEECccc--ccHHHHHHHHHHH
Confidence 34567999999985 3334444444444
No 139
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=50.94 E-value=44 Score=30.62 Aligned_cols=72 Identities=10% Similarity=-0.029 Sum_probs=45.5
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCccc-------cc
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAE-------TS 218 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae-------~g 218 (260)
.+.+||.+|+++-+.++++.+++..... .++.+....++.... ........|+|+|+=.= ..
T Consensus 162 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~----~~~~~~~~~~~~~~~-------~~~~~~~~Ivv~Tp~~l~~~l~~~~~ 230 (479)
T 3fmp_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFY----PELKLAYAVRGNKLE-------RGQKISEQIVIGTPGTVLDWCSKLKF 230 (479)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTS----TTCCEEEESTTCCCC-------TTCCCCCSEEEECHHHHHHHHTTSCC
T ss_pred CCcEEEEeChHHHHHHHHHHHHHHHhhC----CCceEEEEeCCcccc-------ccccCCCCEEEECchHHHHHHHhcCC
Confidence 3479999999999999988888765322 244455544443321 11123447999997432 25
Q ss_pred CCCCCceEEE
Q 038855 219 VTIPGIKYVI 228 (260)
Q Consensus 219 idIp~V~~VI 228 (260)
++..++++||
T Consensus 231 ~~~~~~~~iV 240 (479)
T 3fmp_B 231 IDPKKIKVFV 240 (479)
T ss_dssp CCGGGCCEEE
T ss_pred cCcccCCEEE
Confidence 6667788766
No 140
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=49.69 E-value=68 Score=29.39 Aligned_cols=74 Identities=9% Similarity=-0.029 Sum_probs=47.5
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcccccCC----
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIAETSVT---- 220 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdiae~gid---- 220 (260)
.+.++|||.......+-++..+.. +++.+..+-|+...+++. . ..+...+.+.|.-..-|+.
T Consensus 124 ~~~kVLIfsq~t~~LDilE~~l~~---------~~~~y~RlDG~~~~~~~k-~----~~~~~~i~Lltsag~~gin~~~~ 189 (328)
T 3hgt_A 124 YETETAIVCRPGRTMDLLEALLLG---------NKVHIKRYDGHSIKSAAA-A----NDFSCTVHLFSSEGINFTKYPIK 189 (328)
T ss_dssp SCEEEEEEECSTHHHHHHHHHHTT---------SSCEEEESSSCCC------------CCSEEEEEEESSCCCTTTSCCC
T ss_pred CCCEEEEEECChhHHHHHHHHHhc---------CCCceEeCCCCchhhhhh-c----ccCCceEEEEECCCCCCcCcccc
Confidence 467999999999999998888877 589999999996554322 1 2344555555553333453
Q ss_pred -CCCceEEE--eCCC
Q 038855 221 -IPGIKYVI--DPGF 232 (260)
Q Consensus 221 -Ip~V~~VI--d~g~ 232 (260)
....+.|| |+.+
T Consensus 190 nl~~aD~VI~~Dsdw 204 (328)
T 3hgt_A 190 SKARFDMLICLDTTV 204 (328)
T ss_dssp CCSCCSEEEECSTTC
T ss_pred cCCCCCEEEEECCCC
Confidence 44566666 5543
No 141
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=49.52 E-value=56 Score=34.42 Aligned_cols=58 Identities=12% Similarity=0.011 Sum_probs=48.0
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN 213 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd 213 (260)
.+..++|-+||.+=+...++.+...... -++.+..+.|+++.++|..... ..|+++|+
T Consensus 119 ~G~qv~VvTPTreLA~Qdae~m~~l~~~-----lGLsv~~i~Gg~~~~~r~~ay~------~DIvyGTp 176 (997)
T 2ipc_A 119 TGKGVHVVTVNDYLARRDAEWMGPVYRG-----LGLSVGVIQHASTPAERRKAYL------ADVTYVTN 176 (997)
T ss_dssp TCSCCEEEESSHHHHHHHHHHHHHHHHT-----TTCCEEECCTTCCHHHHHHHHT------SSEEEEEH
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHHh-----cCCeEEEEeCCCCHHHHHHHcC------CCEEEECc
Confidence 3557999999999999999988887653 3789999999999888877763 47999996
No 142
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=47.08 E-value=23 Score=30.87 Aligned_cols=29 Identities=24% Similarity=0.504 Sum_probs=18.3
Q ss_pred CCcccEEEEecCCcCCcchhHHHHHHHHHHh
Q 038855 8 LSRYSVIIVDEAHERTVHTDVLLGLLKKVQN 38 (260)
Q Consensus 8 L~~~~~vIlDEaher~~~~d~ll~~lk~~~~ 38 (260)
..+.+++||||+|. ++.+....+++.+..
T Consensus 132 ~~~~~vlilDE~~~--L~~~~~~~L~~~le~ 160 (354)
T 1sxj_E 132 AHRYKCVIINEANS--LTKDAQAALRRTMEK 160 (354)
T ss_dssp --CCEEEEEECTTS--SCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCccc--cCHHHHHHHHHHHHh
Confidence 45788999999986 555544455554443
No 143
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=45.64 E-value=19 Score=31.92 Aligned_cols=30 Identities=27% Similarity=0.216 Sum_probs=19.8
Q ss_pred CCCCCcccEEEEecCCcCCcchhHHHHHHHHH
Q 038855 5 DPYLSRYSVIIVDEAHERTVHTDVLLGLLKKV 36 (260)
Q Consensus 5 d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~ 36 (260)
.|...+++++||||||..+ .+..-.+++.+
T Consensus 103 ~~~~~~~kvviIdead~l~--~~a~naLLk~l 132 (334)
T 1a5t_A 103 HARLGGAKVVWVTDAALLT--DAAANALLKTL 132 (334)
T ss_dssp CCTTSSCEEEEESCGGGBC--HHHHHHHHHHH
T ss_pred ccccCCcEEEEECchhhcC--HHHHHHHHHHh
Confidence 4556789999999998643 23334455544
No 144
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=45.54 E-value=88 Score=29.15 Aligned_cols=63 Identities=11% Similarity=0.042 Sum_probs=45.0
Q ss_pred CCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC
Q 038855 147 GDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN 213 (260)
Q Consensus 147 g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd 213 (260)
..+||.+|+++-+.++++.+++...... ....+.+..+.|+.....+...+. .+...|+|+|+
T Consensus 147 ~~~lil~Ptr~La~Q~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~Iiv~Tp 209 (563)
T 3i5x_A 147 VKAVIVAPTRDLALQIEAEVKKIHDMNY-GLKKYACVSLVGGTDFRAAMNKMN---KLRPNIVIATP 209 (563)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCG-GGTTSCEEEECTTSCHHHHHHHHH---HHCCSEEEECH
T ss_pred eeEEEEcCcHHHHHHHHHHHHHHHhhcc-ccCceeEEEEECCcCHHHHHHHHh---cCCCCEEEECc
Confidence 4799999999999999999988654211 123566888888887666544432 23457999996
No 145
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=44.71 E-value=61 Score=33.89 Aligned_cols=57 Identities=7% Similarity=0.060 Sum_probs=46.6
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN 213 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd 213 (260)
+..++|-+||.+=+...++.+.....- -++.+..+.|+++.++|...+. ..|+++||
T Consensus 152 g~~v~VvTpTreLA~Qdae~m~~l~~~-----lGLsv~~i~gg~~~~~r~~~y~------~DIvygTp 208 (922)
T 1nkt_A 152 GNGVHIVTVNDYLAKRDSEWMGRVHRF-----LGLQVGVILATMTPDERRVAYN------ADITYGTN 208 (922)
T ss_dssp TSCEEEEESSHHHHHHHHHHHHHHHHH-----TTCCEEECCTTCCHHHHHHHHH------SSEEEEEH
T ss_pred CCCeEEEeCCHHHHHHHHHHHHHHHhh-----cCCeEEEEeCCCCHHHHHHhcC------CCEEEECc
Confidence 457999999999998888888776543 2789999999999888776653 36999997
No 146
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=43.73 E-value=44 Score=28.40 Aligned_cols=57 Identities=12% Similarity=0.060 Sum_probs=39.7
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN 213 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd 213 (260)
..+++||.+|+++-++...+.+.+.... ....+..++|+..... ...+...|+|+|.
T Consensus 156 ~~~~~lil~Pt~~L~~q~~~~l~~~~~~-----~~~~~~~~~~~~~~~~-------~~~~~~~I~v~T~ 212 (282)
T 1rif_A 156 YEGKILIIVPTTALTTQMADDFVDYRLF-----SHAMIKKIGGGASKDD-------KYKNDAPVVVGTW 212 (282)
T ss_dssp CSSEEEEECSSHHHHHHHHHHHHHHTSC-----CGGGEEECSTTCSSTT-------CCCTTCSEEEECH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHhccc-----ccceEEEEeCCCcchh-------hhccCCcEEEEch
Confidence 3568999999999999999999876321 2346677777764332 1124567999997
No 147
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=42.95 E-value=20 Score=31.81 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=20.0
Q ss_pred CCCCCcccEEEEecCCcCCcchhHHHHHHHHH
Q 038855 5 DPYLSRYSVIIVDEAHERTVHTDVLLGLLKKV 36 (260)
Q Consensus 5 d~~L~~~~~vIlDEaher~~~~d~ll~~lk~~ 36 (260)
-|...+++++||||||..+. +-.-+++|.+
T Consensus 77 ~p~~~~~kvviIdead~lt~--~a~naLLk~L 106 (305)
T 2gno_A 77 SPELYTRKYVIVHDCERMTQ--QAANAFLKAL 106 (305)
T ss_dssp CCSSSSSEEEEETTGGGBCH--HHHHHTHHHH
T ss_pred ccccCCceEEEeccHHHhCH--HHHHHHHHHH
Confidence 46677899999999996442 2234445444
No 148
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=42.93 E-value=50 Score=30.42 Aligned_cols=58 Identities=12% Similarity=0.058 Sum_probs=42.7
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCc
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNI 214 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdi 214 (260)
..+++||.+|+++-++...+.+++... ..+..+..++|+.+..++ ..+...|+|+|.=
T Consensus 156 ~~~~vlvl~P~~~L~~Q~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~-------~~~~~~I~i~T~~ 213 (510)
T 2oca_A 156 YEGKILIIVPTTALTTQMADDFVDYRL-----FSHAMIKKIGGGASKDDK-------YKNDAPVVVGTWQ 213 (510)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHHHTTS-----SCGGGEEECGGGCCTTGG-------GCTTCSEEEEEHH
T ss_pred CCCeEEEEECcHHHHHHHHHHHHHhhc-----CCccceEEEecCCccccc-------cccCCcEEEEeHH
Confidence 345999999999999998888876411 124578889998876654 2456789999863
No 149
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=42.44 E-value=1e+02 Score=29.16 Aligned_cols=64 Identities=11% Similarity=0.027 Sum_probs=45.6
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN 213 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd 213 (260)
...+||.+|+++-+.++++.+++...... ....+.+..++|+.....+...+.. +...|+|+|+
T Consensus 95 ~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~-~~~~~~~~~~~gg~~~~~~~~~l~~---~~~~IlV~Tp 158 (579)
T 3sqw_A 95 MVKAVIVAPTRDLALQIEAEVKKIHDMNY-GLKKYACVSLVGGTDFRAAMNKMNK---LRPNIVIATP 158 (579)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCG-GGTTSCEEEECTTSCHHHHHHHHHH---HCCSEEEECH
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHHhhcc-cccceEEEEEECCccHHHHHHHHhc---CCCCEEEECH
Confidence 34799999999999999999988653211 1235678888888887665544432 3457999996
No 150
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=42.29 E-value=27 Score=30.49 Aligned_cols=29 Identities=31% Similarity=0.505 Sum_probs=18.1
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHH
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKV 36 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~ 36 (260)
|...+..+|||||+|.. ..+....+++.+
T Consensus 115 ~~~~~~~vliiDe~~~l--~~~~~~~Ll~~l 143 (373)
T 1jr3_A 115 PARGRFKVYLIDEVHML--SRHSFNALLKTL 143 (373)
T ss_dssp CSSSSSEEEEEECGGGS--CHHHHHHHHHHH
T ss_pred cccCCeEEEEEECcchh--cHHHHHHHHHHH
Confidence 44567889999999853 333344444444
No 151
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=41.19 E-value=16 Score=35.71 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=16.1
Q ss_pred cccEEEEecCCcCCcchhHHHHHHH
Q 038855 10 RYSVIIVDEAHERTVHTDVLLGLLK 34 (260)
Q Consensus 10 ~~~~vIlDEaher~~~~d~ll~~lk 34 (260)
++++||||||+ +++.+.+..+++
T Consensus 262 ~~d~lIIDEAs--ml~~~~~~~Ll~ 284 (608)
T 1w36_D 262 HLDVLVVDEAS--MIDLPMMSRLID 284 (608)
T ss_dssp SCSEEEECSGG--GCBHHHHHHHHH
T ss_pred CCCEEEEechh--hCCHHHHHHHHH
Confidence 78999999998 455554444443
No 152
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=37.59 E-value=1.9e+02 Score=27.94 Aligned_cols=44 Identities=9% Similarity=0.126 Sum_probs=30.3
Q ss_pred HHHHHHHHH--hhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEe
Q 038855 133 TLITIFQVH--LDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPI 185 (260)
Q Consensus 133 ~~~~l~~i~--~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~l 185 (260)
....+.++. ....+++|.|.+++......+.+.|.+ .++++...
T Consensus 327 va~~I~~l~~~~g~~~~diaVL~r~~~~~~~l~~~L~~---------~gIp~~~~ 372 (673)
T 1uaa_A 327 VTGELIAHHFVNKTQYKDYAILYRGNHQSRVFEKFLMQ---------NRIPYKIS 372 (673)
T ss_dssp HHHHHHHHHHHHCCCTTTEEEEESSSGGGTTHHHHHHH---------TTCCEEES
T ss_pred HHHHHHHHHhccCCCccCEEEEEechhhHHHHHHHHHH---------CCCCEEEe
Confidence 344444444 234578999999999888888888877 37766543
No 153
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=36.76 E-value=59 Score=28.44 Aligned_cols=30 Identities=7% Similarity=0.056 Sum_probs=18.8
Q ss_pred CCCCcccEEEEecCCcCCcchhHHHHHHHHH
Q 038855 6 PYLSRYSVIIVDEAHERTVHTDVLLGLLKKV 36 (260)
Q Consensus 6 ~~L~~~~~vIlDEaher~~~~d~ll~~lk~~ 36 (260)
|.+++.++|||||+|. .+..+..-.+++.+
T Consensus 72 plf~~~kvvii~~~~~-kl~~~~~~aLl~~l 101 (343)
T 1jr3_D 72 SLFASRQTLLLLLPEN-GPNAAINEQLLTLT 101 (343)
T ss_dssp HHCCSCEEEEEECCSS-CCCTTHHHHHHHHH
T ss_pred CCccCCeEEEEECCCC-CCChHHHHHHHHHH
Confidence 5678899999999985 12233333444444
No 154
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=35.72 E-value=43 Score=32.70 Aligned_cols=70 Identities=11% Similarity=0.076 Sum_probs=48.0
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC-----cccccCC
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN-----IAETSVT 220 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd-----iae~gid 220 (260)
++++++.+|+++-+...++.++. +. ..++.+..++|+....++ ..+...|+|+|+ +..++-.
T Consensus 68 ~~~~l~i~P~r~La~q~~~~~~~-~~-----~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~l~~~~~ 134 (702)
T 2p6r_A 68 GGKSLYVVPLRALAGEKYESFKK-WE-----KIGLRIGISTGDYESRDE-------HLGDCDIIVTTSEKADSLIRNRAS 134 (702)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTT-TT-----TTTCCEEEECSSCBCCSS-------CSTTCSEEEEEHHHHHHHHHTTCS
T ss_pred CCcEEEEeCcHHHHHHHHHHHHH-HH-----hcCCEEEEEeCCCCcchh-------hccCCCEEEECHHHHHHHHHcChh
Confidence 67999999999999988888743 21 136788899998765432 124678999996 3333322
Q ss_pred -CCCceEEE
Q 038855 221 -IPGIKYVI 228 (260)
Q Consensus 221 -Ip~V~~VI 228 (260)
+.++++||
T Consensus 135 ~l~~~~~vI 143 (702)
T 2p6r_A 135 WIKAVSCLV 143 (702)
T ss_dssp GGGGCCEEE
T ss_pred HHhhcCEEE
Confidence 45676666
No 155
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=35.70 E-value=72 Score=33.59 Aligned_cols=64 Identities=6% Similarity=-0.027 Sum_probs=47.0
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEec-----CcccccC
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILAT-----NIAETSV 219 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaT-----diae~gi 219 (260)
.++.+||.+|+++-+.+.++.+.+.+. .+..++|+.+ ..+...|+|+| +...++-
T Consensus 226 ~g~rvlvl~PtraLa~Q~~~~l~~~~~---------~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~ 285 (1108)
T 3l9o_A 226 NKQRVIYTSPIKALSNQKYRELLAEFG---------DVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGS 285 (1108)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHTS---------SEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCS
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHhC---------CccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCc
Confidence 467899999999999999999998642 4666888876 23456799999 3444443
Q ss_pred -CCCCceEEE
Q 038855 220 -TIPGIKYVI 228 (260)
Q Consensus 220 -dIp~V~~VI 228 (260)
.+.++++||
T Consensus 286 ~~l~~l~lVV 295 (1108)
T 3l9o_A 286 EVMREVAWVI 295 (1108)
T ss_dssp SHHHHEEEEE
T ss_pred cccccCCEEE
Confidence 356777766
No 156
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=35.44 E-value=2.3e+02 Score=27.84 Aligned_cols=45 Identities=9% Similarity=0.016 Sum_probs=31.2
Q ss_pred HHHHHHHHHh--hcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEec
Q 038855 133 TLITIFQVHL--DEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIF 186 (260)
Q Consensus 133 ~~~~l~~i~~--~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh 186 (260)
....+.++.. ...+++|-|.+++......+++.|.+ .++++...-
T Consensus 336 va~~I~~l~~~~g~~~~diAIL~R~~~~~~~le~~L~~---------~gIPy~~~g 382 (724)
T 1pjr_A 336 VAGRIREAVERGERRYRDFAVLYRTNAQSRVMEEMLLK---------ANIPYQIVG 382 (724)
T ss_dssp HHHHHHHHHTTTSCCGGGEEEEESSGGGHHHHHHHHHH---------TTCCEEEET
T ss_pred HHHHHHHHHHhcCCChhheeeeeecchhHHHHHHHHHH---------cCCCEEEeC
Confidence 3344444443 22467899999999999989888887 377765553
No 157
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=34.46 E-value=61 Score=32.43 Aligned_cols=64 Identities=9% Similarity=-0.034 Sum_probs=44.3
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC---cccccCCCC
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN---IAETSVTIP 222 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd---iae~gidIp 222 (260)
+.++||..|+++-+.++++.+.+.+ +..+....|... ..+..+|+++|+ +....+...
T Consensus 257 g~~vLVl~PTReLA~Qia~~l~~~~--------g~~vg~~vG~~~-----------~~~~~~IlV~TPGrLl~~~~l~l~ 317 (666)
T 3o8b_A 257 GYKVLVLNPSVAATLGFGAYMSKAH--------GIDPNIRTGVRT-----------ITTGAPVTYSTYGKFLADGGCSGG 317 (666)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHHH--------SCCCEEECSSCE-----------ECCCCSEEEEEHHHHHHTTSCCTT
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHh--------CCCeeEEECcEe-----------ccCCCCEEEECcHHHHhCCCcccC
Confidence 5589999999999999998887754 333444555532 235568999987 344456666
Q ss_pred CceEEE
Q 038855 223 GIKYVI 228 (260)
Q Consensus 223 ~V~~VI 228 (260)
++++||
T Consensus 318 ~l~~lV 323 (666)
T 3o8b_A 318 AYDIII 323 (666)
T ss_dssp SCSEEE
T ss_pred cccEEE
Confidence 777665
No 158
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=33.96 E-value=1.3e+02 Score=28.08 Aligned_cols=70 Identities=10% Similarity=0.031 Sum_probs=40.9
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecCcc------cccC
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATNIA------ETSV 219 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTdia------e~gi 219 (260)
.+.+||.+|+++-+.++.+.+++.... .++.+....++...... .....|+|+|+=. ...+
T Consensus 189 ~~~vLvl~P~~~L~~Q~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~--------~~~~~Ivv~T~~~l~~~l~~~~~ 255 (508)
T 3fho_A 189 KPQAICLAPSRELARQIMDVVTEMGKY-----TEVKTAFGIKDSVPKGA--------KIDAQIVIGTPGTVMDLMKRRQL 255 (508)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHSTT-----SSCCEEC------------------CCCCSEEEECHHHHHHHHHTTCS
T ss_pred CceEEEEECcHHHHHHHHHHHHHhCCc-----cCeeEEEEeCCcccccc--------cCCCCEEEECHHHHHHHHHcCCc
Confidence 558999999999999999999886432 23334443333222211 1245799999532 1245
Q ss_pred CCCCceEEE
Q 038855 220 TIPGIKYVI 228 (260)
Q Consensus 220 dIp~V~~VI 228 (260)
...++++||
T Consensus 256 ~~~~~~lII 264 (508)
T 3fho_A 256 DARDIKVFV 264 (508)
T ss_dssp CCTTCCEEE
T ss_pred cccCCCEEE
Confidence 667777766
No 159
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=33.51 E-value=65 Score=27.72 Aligned_cols=15 Identities=33% Similarity=0.556 Sum_probs=12.3
Q ss_pred CCCcccEEEEecCCc
Q 038855 7 YLSRYSVIIVDEAHE 21 (260)
Q Consensus 7 ~L~~~~~vIlDEahe 21 (260)
...+..+|||||+|.
T Consensus 102 ~~~~~~vliiDEi~~ 116 (324)
T 3u61_B 102 FDGRQKVIVIDEFDR 116 (324)
T ss_dssp CSSCEEEEEEESCCC
T ss_pred cCCCCeEEEEECCcc
Confidence 345789999999985
No 160
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=32.73 E-value=25 Score=28.13 Aligned_cols=17 Identities=6% Similarity=0.256 Sum_probs=12.8
Q ss_pred EEEEeccCCHHHHHhhh
Q 038855 86 LIIMSASLDARGFSEYF 102 (260)
Q Consensus 86 lil~SATl~~~~~~~~~ 102 (260)
.+++++..+++.+...+
T Consensus 151 ~~i~tsn~~~~~l~~~~ 167 (202)
T 2w58_A 151 PTFFTSNFDMQQLAHHL 167 (202)
T ss_dssp CEEEEESSCHHHHHHHS
T ss_pred CEEEEcCCCHHHHHHHH
Confidence 47777777888888766
No 161
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=32.67 E-value=62 Score=25.09 Aligned_cols=13 Identities=31% Similarity=0.677 Sum_probs=10.9
Q ss_pred CcccEEEEecCCc
Q 038855 9 SRYSVIIVDEAHE 21 (260)
Q Consensus 9 ~~~~~vIlDEahe 21 (260)
.+..+|||||+|.
T Consensus 101 ~~~~vliiDe~~~ 113 (226)
T 2chg_A 101 APFKIIFLDEADA 113 (226)
T ss_dssp CSCEEEEEETGGG
T ss_pred cCceEEEEeChhh
Confidence 4678999999985
No 162
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=31.74 E-value=3.3e+02 Score=25.63 Aligned_cols=124 Identities=12% Similarity=0.085 Sum_probs=0.0
Q ss_pred cccEEEEecCCcCCcchhHHHHHHHHHHhhccCCcCCCCCCCCCCCCccccccccCCccCccccccccCCCCCCceEEEE
Q 038855 10 RYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQCQGRKFPPLKLIIM 89 (260)
Q Consensus 10 ~~~~vIlDEaher~~~~d~ll~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qlil~ 89 (260)
++++|+|||++ |+-...+..+...... ..+++++
T Consensus 213 ~~~~ilVDE~Q------D~~~~q~~ll~~l~~~----------------------------------------~~~l~~v 246 (647)
T 3lfu_A 213 RFTNILVDEFQ------DTNNIQYAWIRLLAGD----------------------------------------TGKVMIV 246 (647)
T ss_dssp HCCEEEESSGG------GCCHHHHHHHHHHHTT----------------------------------------TCEEEEE
T ss_pred hCCEEEEECcc------cCCHHHHHHHHHHhcC----------------------------------------CCEEEEE
Q ss_pred -----------eccC-CHHHHHhhhCCCcEEEec--------------------------------CceeeeeEEEeeCC
Q 038855 90 -----------SASL-DARGFSEYFGCAKAVHVQ--------------------------------GRQFPVEILYTLYP 125 (260)
Q Consensus 90 -----------SATl-~~~~~~~~~~~~~~v~v~--------------------------------~~~~~v~~~~~~~~ 125 (260)
.|+. ....+.+-+++.+.+.+. ....++..+.....
T Consensus 247 GD~~QsIy~frga~~~~~~~~~~~~~~~~~~~L~~nyRs~~~I~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (647)
T 3lfu_A 247 GDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENNNGRLGKKLWTDGADGEPISLYCAFNE 326 (647)
T ss_dssp ECGGGCCCGGGTCCTTHHHHHHHHCTTCEEEEECBCSSSCHHHHHHHHHHHTTCSSCCCCCCBCSSCCCCCEEEEEEEEH
T ss_pred cCchhhhccccCCCHHHHHHHHHhCCCCeEEEcccCCCCCHHHHHHHHHHHHhcccccCCccccCCCCCCceEEEecCCh
Q ss_pred CcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCC
Q 038855 126 EPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSS 188 (260)
Q Consensus 126 ~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~ 188 (260)
....-...-.....+.....+++|.|.+++......+.+.|.+ .++++....+.
T Consensus 327 ~~e~~~ia~~I~~l~~~g~~~~diaVL~r~~~~~~~l~~~l~~---------~~Ip~~~~~~~ 380 (647)
T 3lfu_A 327 LDEARFVVNRIKTWQDNGGALAECAILYRSNAQSRVLEEALLQ---------ASMPYRIYGGM 380 (647)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEESSGGGHHHHHHHHHH---------TTCCEEESSSC
T ss_pred HHHHHHHHHHHHHHHHcCCCccCEEEEEeCchhHHHHHHHHHH---------CCCCEEEeCCC
No 163
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=30.55 E-value=16 Score=34.92 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=13.0
Q ss_pred CCCcccEEEEecCCc
Q 038855 7 YLSRYSVIIVDEAHE 21 (260)
Q Consensus 7 ~L~~~~~vIlDEahe 21 (260)
.+.+.+++|+||||.
T Consensus 172 ~~~~~~~vIiDEAHn 186 (540)
T 2vl7_A 172 LKLEDYLIVIDEAHN 186 (540)
T ss_dssp CCGGGEEEEETTGGG
T ss_pred cCcCCCEEEEEcccc
Confidence 467889999999995
No 164
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=30.11 E-value=3.2e+02 Score=24.97 Aligned_cols=24 Identities=4% Similarity=0.346 Sum_probs=21.5
Q ss_pred CEEEEeCCHHHHHHHHHHHHHHHh
Q 038855 148 DILVFLTGQEEIESVERLVQERLL 171 (260)
Q Consensus 148 ~iLVFl~~~~~ve~v~~~L~~~l~ 171 (260)
.+.|.++|.+++..+.+.|+..+.
T Consensus 254 ~~aIL~rtN~~~~~~n~~lr~~~~ 277 (459)
T 3upu_A 254 ENRVMAFTNKSVDKLNSIIRKKIF 277 (459)
T ss_dssp TEEEEESSHHHHHHHHHHHHHHHT
T ss_pred ceEEEEehHhHHHHHHHHHHHHhh
Confidence 899999999999999999988643
No 165
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=30.06 E-value=44 Score=31.90 Aligned_cols=72 Identities=8% Similarity=0.118 Sum_probs=48.0
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEe-----cCCCC-----HHHHHHHhcccCCCCeEEEEecCc
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPI-----FSSLP-----SEQQMKVFAPAAAGFRKVILATNI 214 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~l-----h~~l~-----~~~r~~v~~~~~~g~~kVlvaTdi 214 (260)
.++++||.+++..++..++..|...++. .+...|- |.... ..+|++++.....+...|+|||--
T Consensus 38 ~~~p~lvv~~~~~~A~~l~~~l~~~~~~------~v~~fp~~e~lpyd~~~p~~~~~~~Rl~~l~~L~~~~~~ivv~sv~ 111 (483)
T 3hjh_A 38 HAGPVVLIAPDMQNALRLHDEISQFTDQ------MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVN 111 (483)
T ss_dssp SSSCEEEEESSHHHHHHHHHHHHHTCSS------CEEECCCCCSCTTCSSCCCHHHHHHHHHHHHHGGGCCSSEEEEEHH
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHhhCCC------cEEEEeCcccccccccCCChHHHHHHHHHHHHHHhCCCCEEEEEHH
Confidence 3678999999999999999999886431 2222221 11111 235888888887777778888765
Q ss_pred ccccCCCC
Q 038855 215 AETSVTIP 222 (260)
Q Consensus 215 ae~gidIp 222 (260)
+-.+.-.|
T Consensus 112 al~~~~~p 119 (483)
T 3hjh_A 112 TLMQRVCP 119 (483)
T ss_dssp HHHBCCCC
T ss_pred HHhhcCCC
Confidence 55554444
No 166
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=30.03 E-value=92 Score=24.20 Aligned_cols=12 Identities=17% Similarity=0.415 Sum_probs=10.2
Q ss_pred cccEEEEecCCc
Q 038855 10 RYSVIIVDEAHE 21 (260)
Q Consensus 10 ~~~~vIlDEahe 21 (260)
+.+++||||++.
T Consensus 100 ~~~llilDE~~~ 111 (180)
T 3ec2_A 100 NSPVLVLDDLGS 111 (180)
T ss_dssp TCSEEEEETCSS
T ss_pred CCCEEEEeCCCC
Confidence 568999999984
No 167
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=29.94 E-value=34 Score=31.19 Aligned_cols=46 Identities=7% Similarity=0.017 Sum_probs=35.5
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeE-EEEecCCCCHHHHHHHhcccCCCCeEEEEecC
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLV-TVPIFSSLPSEQQMKVFAPAAAGFRKVILATN 213 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~-~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd 213 (260)
++++||.+|+++-+....+.+.+ + +.. +..+||+... ...|+|+|.
T Consensus 133 ~~~~Lvl~P~~~L~~Q~~~~~~~-~--------~~~~v~~~~g~~~~-------------~~~Ivv~T~ 179 (472)
T 2fwr_A 133 STPTLIVVPTLALAEQWKERLGI-F--------GEEYVGEFSGRIKE-------------LKPLTVSTY 179 (472)
T ss_dssp CSCEEEEESSHHHHHHHHHHGGG-G--------CGGGEEEBSSSCBC-------------CCSEEEEEH
T ss_pred CCCEEEEECCHHHHHHHHHHHHh-C--------CCcceEEECCCcCC-------------cCCEEEEEc
Confidence 57899999999988888877776 2 566 8889987752 245888875
No 168
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=29.70 E-value=34 Score=27.39 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=12.7
Q ss_pred CCcccEEEEecCCcCCc
Q 038855 8 LSRYSVIIVDEAHERTV 24 (260)
Q Consensus 8 L~~~~~vIlDEaher~~ 24 (260)
+.+..+|||||+|....
T Consensus 102 ~~~~~vliiDe~~~~~~ 118 (242)
T 3bos_A 102 LEQFDLICIDDVDAVAG 118 (242)
T ss_dssp GGGSSEEEEETGGGGTT
T ss_pred ccCCCEEEEeccccccC
Confidence 35578999999986443
No 169
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=29.04 E-value=62 Score=27.42 Aligned_cols=11 Identities=36% Similarity=0.380 Sum_probs=9.2
Q ss_pred ccEEEEecCCc
Q 038855 11 YSVIIVDEAHE 21 (260)
Q Consensus 11 ~~~vIlDEahe 21 (260)
-.+|+|||+|.
T Consensus 131 ~~vl~iDEid~ 141 (309)
T 3syl_A 131 GGVLFIDEAYY 141 (309)
T ss_dssp TSEEEEETGGG
T ss_pred CCEEEEEChhh
Confidence 36999999984
No 170
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=28.88 E-value=19 Score=35.38 Aligned_cols=70 Identities=16% Similarity=0.157 Sum_probs=48.3
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC-----cccccCC
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN-----IAETSVT 220 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd-----iae~gid 220 (260)
++++++.+|+++-+..+++.+.. +.. .++.+..++|+.....+. .+...|+|+|+ +..++..
T Consensus 68 ~~~~l~i~P~raLa~q~~~~~~~-l~~-----~g~~v~~~~G~~~~~~~~-------~~~~~Iiv~Tpe~l~~~~~~~~~ 134 (720)
T 2zj8_A 68 GGKAVYIVPLKALAEEKFQEFQD-WEK-----IGLRVAMATGDYDSKDEW-------LGKYDIIIATAEKFDSLLRHGSS 134 (720)
T ss_dssp CSEEEEECSSGGGHHHHHHHTGG-GGG-----GTCCEEEECSCSSCCCGG-------GGGCSEEEECHHHHHHHHHHTCT
T ss_pred CCEEEEEcCcHHHHHHHHHHHHH-HHh-----cCCEEEEecCCCCccccc-------cCCCCEEEECHHHHHHHHHcChh
Confidence 57899999999999998888853 221 267899999987655431 13568999997 2223222
Q ss_pred -CCCceEEE
Q 038855 221 -IPGIKYVI 228 (260)
Q Consensus 221 -Ip~V~~VI 228 (260)
+.++++||
T Consensus 135 ~l~~~~~vI 143 (720)
T 2zj8_A 135 WIKDVKILV 143 (720)
T ss_dssp TGGGEEEEE
T ss_pred hhhcCCEEE
Confidence 45677766
No 171
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=27.36 E-value=52 Score=27.56 Aligned_cols=46 Identities=7% Similarity=0.017 Sum_probs=33.2
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeE-EEEecCCCCHHHHHHHhcccCCCCeEEEEecC
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLV-TVPIFSSLPSEQQMKVFAPAAAGFRKVILATN 213 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~-~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd 213 (260)
.+++||++|+++-+..+.+.+.+ + +.. +..++|+... ...|+|+|.
T Consensus 133 ~~~~liv~P~~~L~~q~~~~~~~-~--------~~~~v~~~~g~~~~-------------~~~i~v~T~ 179 (237)
T 2fz4_A 133 STPTLIVVPTLALAEQWKERLGI-F--------GEEYVGEFSGRIKE-------------LKPLTVSTY 179 (237)
T ss_dssp CSCEEEEESSHHHHHHHHHHHGG-G--------CGGGEEEESSSCBC-------------CCSEEEEEH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHh-C--------CCCeEEEEeCCCCC-------------cCCEEEEeH
Confidence 67899999999988887777766 2 455 7777776531 346788774
No 172
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=26.28 E-value=83 Score=26.54 Aligned_cols=14 Identities=29% Similarity=0.593 Sum_probs=11.5
Q ss_pred CcccEEEEecCCcC
Q 038855 9 SRYSVIIVDEAHER 22 (260)
Q Consensus 9 ~~~~~vIlDEaher 22 (260)
.+..+||+||+|..
T Consensus 109 ~~~~vliiDe~~~l 122 (327)
T 1iqp_A 109 ASFKIIFLDEADAL 122 (327)
T ss_dssp CSCEEEEEETGGGS
T ss_pred CCCeEEEEeCCCcC
Confidence 56789999999853
No 173
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=26.06 E-value=1.2e+02 Score=29.85 Aligned_cols=67 Identities=7% Similarity=-0.060 Sum_probs=45.9
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEe--------------------cCCC--C---HHHHHHHhcc
Q 038855 146 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPI--------------------FSSL--P---SEQQMKVFAP 200 (260)
Q Consensus 146 ~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~l--------------------h~~l--~---~~~r~~v~~~ 200 (260)
+.++||.+|+...+..++..|...++. -.+..+ |... . ...|..++..
T Consensus 53 ~~~~lvv~~~~~~A~ql~~el~~~~~~-------~~V~~fps~yd~~~pe~~~~~~d~~~~~~~~~~~~i~~~R~~~l~~ 125 (664)
T 1c4o_A 53 GRPALVLAPNKILAAQLAAEFRELFPE-------NAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRS 125 (664)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHCTT-------SEEEECCCGGGTSCCCEEEGGGTEEECCCCSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHCCC-------CeEEEcCchhhccCcccccchhhhhhhhhcccCHHHHHHHHHHHHH
Confidence 457999999999999999999998532 122222 2232 2 4468888877
Q ss_pred cCCCCeEEEEecCcccccC
Q 038855 201 AAAGFRKVILATNIAETSV 219 (260)
Q Consensus 201 ~~~g~~kVlvaTdiae~gi 219 (260)
...+...|+|||--|-.++
T Consensus 126 L~~~~~~ivV~s~~~l~~~ 144 (664)
T 1c4o_A 126 LLTRRDVIVVASVSAIYGL 144 (664)
T ss_dssp HHHCSCEEEEEEGGGCSCC
T ss_pred HHhCCCeEEEecHHHHhcC
Confidence 7656667888876555554
No 174
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=25.45 E-value=2e+02 Score=24.65 Aligned_cols=86 Identities=14% Similarity=0.141 Sum_probs=59.7
Q ss_pred eeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCC-------
Q 038855 117 VEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSL------- 189 (260)
Q Consensus 117 v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l------- 189 (260)
-++.|-..+.+..-+..+.....-.....-..++|+-.+-+.+..+.+.+.. -++.++.+|.+.
T Consensus 15 ~~~~YF~~~G~eNT~~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~~~---------i~lVvVTh~~GF~~pg~~e 85 (201)
T 1vp8_A 15 KKIVYFNKPGRENTEETLRLAVERAKELGIKHLVVASSYGDTAMKALEMAEG---------LEVVVVTYHTGFVREGENT 85 (201)
T ss_dssp CCCEEESSCSGGGHHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHCTT---------CEEEEEECCTTSSSTTCCS
T ss_pred heEEEecCCCcccHHHHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHhcC---------CeEEEEeCcCCCCCCCCCc
Confidence 4677888888887777777776666665667899999999988877775511 266777777654
Q ss_pred -CHHHHHHHhcccCCCCeEEEEecCcc
Q 038855 190 -PSEQQMKVFAPAAAGFRKVILATNIA 215 (260)
Q Consensus 190 -~~~~r~~v~~~~~~g~~kVlvaTdia 215 (260)
+++.|.+.. +...+|+-+|-+.
T Consensus 86 ~~~e~~~~L~----~~G~~V~t~tH~l 108 (201)
T 1vp8_A 86 MPPEVEEELR----KRGAKIVRQSHIL 108 (201)
T ss_dssp SCHHHHHHHH----HTTCEEEECCCTT
T ss_pred CCHHHHHHHH----hCCCEEEEEeccc
Confidence 445555443 3445888888764
No 175
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=25.40 E-value=29 Score=33.86 Aligned_cols=71 Identities=6% Similarity=0.038 Sum_probs=48.5
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC-----cccccC
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN-----IAETSV 219 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd-----iae~gi 219 (260)
.++++++.+|+++-+..+++.++. +.. .++.+..++|+....++. + +...|+|+|+ +..++-
T Consensus 74 ~~~~il~i~P~r~La~q~~~~~~~-~~~-----~g~~v~~~~G~~~~~~~~--~-----~~~~Iiv~Tpe~l~~~~~~~~ 140 (715)
T 2va8_A 74 NGGKAIYVTPLRALTNEKYLTFKD-WEL-----IGFKVAMTSGDYDTDDAW--L-----KNYDIIITTYEKLDSLWRHRP 140 (715)
T ss_dssp SCSEEEEECSCHHHHHHHHHHHGG-GGG-----GTCCEEECCSCSSSCCGG--G-----GGCSEEEECHHHHHHHHHHCC
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHH-hhc-----CCCEEEEEeCCCCCchhh--c-----CCCCEEEEcHHHHHHHHhCCh
Confidence 367999999999999888888743 221 267888899987654421 1 2567999997 333333
Q ss_pred C-CCCceEEE
Q 038855 220 T-IPGIKYVI 228 (260)
Q Consensus 220 d-Ip~V~~VI 228 (260)
. +.++++||
T Consensus 141 ~~l~~~~~vI 150 (715)
T 2va8_A 141 EWLNEVNYFV 150 (715)
T ss_dssp GGGGGEEEEE
T ss_pred hHhhccCEEE
Confidence 2 55777776
No 176
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=25.20 E-value=53 Score=25.63 Aligned_cols=14 Identities=14% Similarity=0.164 Sum_probs=11.5
Q ss_pred CCcccEEEEecCCc
Q 038855 8 LSRYSVIIVDEAHE 21 (260)
Q Consensus 8 L~~~~~vIlDEahe 21 (260)
+.+.+++||||++.
T Consensus 81 ~~~~~lLilDE~~~ 94 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK 94 (149)
T ss_dssp GGGCSEEEEESTTC
T ss_pred HhCCCEEEEeCccc
Confidence 34678999999985
No 177
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=24.72 E-value=44 Score=29.44 Aligned_cols=17 Identities=0% Similarity=0.100 Sum_probs=12.8
Q ss_pred EEEEeccCCHHHHHhhh
Q 038855 86 LIIMSASLDARGFSEYF 102 (260)
Q Consensus 86 lil~SATl~~~~~~~~~ 102 (260)
.+++|+..+++.+...|
T Consensus 250 ~~IitSN~~~~~l~~~~ 266 (308)
T 2qgz_A 250 PTFFTSNYSFADLERKW 266 (308)
T ss_dssp CEEEEESSCHHHHHTTC
T ss_pred cEEEECCCCHHHHHHHH
Confidence 37777777888888766
No 178
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=24.43 E-value=89 Score=26.50 Aligned_cols=10 Identities=30% Similarity=0.398 Sum_probs=8.5
Q ss_pred cEEEEecCCc
Q 038855 12 SVIIVDEAHE 21 (260)
Q Consensus 12 ~~vIlDEahe 21 (260)
-+|||||+|.
T Consensus 130 ~vlvlDe~~~ 139 (350)
T 2qen_A 130 FIVAFDEAQY 139 (350)
T ss_dssp EEEEEETGGG
T ss_pred EEEEEeCHHH
Confidence 4789999995
No 179
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=24.08 E-value=85 Score=26.93 Aligned_cols=14 Identities=43% Similarity=0.712 Sum_probs=11.3
Q ss_pred CcccEEEEecCCcC
Q 038855 9 SRYSVIIVDEAHER 22 (260)
Q Consensus 9 ~~~~~vIlDEaher 22 (260)
.+..+||+||+|..
T Consensus 132 ~~~~vliiDE~~~l 145 (353)
T 1sxj_D 132 PPYKIIILDEADSM 145 (353)
T ss_dssp CSCEEEEETTGGGS
T ss_pred CCceEEEEECCCcc
Confidence 46689999999853
No 180
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=23.52 E-value=73 Score=26.13 Aligned_cols=11 Identities=18% Similarity=0.410 Sum_probs=7.9
Q ss_pred ccEEEEecCCc
Q 038855 11 YSVIIVDEAHE 21 (260)
Q Consensus 11 ~~~vIlDEahe 21 (260)
-.+|+|||+|.
T Consensus 99 ~~vl~iDeid~ 109 (262)
T 2qz4_A 99 PCIVYIDEIDA 109 (262)
T ss_dssp SEEEEEECC--
T ss_pred CeEEEEeCcch
Confidence 46899999985
No 181
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=22.91 E-value=3.2e+02 Score=22.49 Aligned_cols=131 Identities=8% Similarity=0.037 Sum_probs=58.6
Q ss_pred EEEEeccCCHHHHHhhhCCCcEEEecCceeeeeEEEeeCCCcchHHHHHHHHHHHHhhcCCCCEEEEeCC-----HHHHH
Q 038855 86 LIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDFLDATLITIFQVHLDEAPGDILVFLTG-----QEEIE 160 (260)
Q Consensus 86 lil~SATl~~~~~~~~~~~~~~v~v~~~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~-----~~~ve 160 (260)
+|+++...+...+...-.+.|++.+..........++. .+.........-.+.. ....+|.++... .+..+
T Consensus 70 iIi~~~~~~~~~~~~~~~~iPvV~i~~~~~~~~~~~V~---~D~~~~~~~a~~~L~~-~G~~~I~~i~~~~~~~~~~R~~ 145 (289)
T 3k9c_A 70 AILLGTRFDTDELGALADRVPALVVARASGLPGVGAVR---GDDVAGITLAVDHLTE-LGHRNIAHIDGADAPGGADRRA 145 (289)
T ss_dssp EEEETCCCCHHHHHHHHTTSCEEEESSCCSSTTSEEEE---ECHHHHHHHHHHHHHH-TTCCSEEEECCTTSTTHHHHHH
T ss_pred EEEECCCCCHHHHHHHHcCCCEEEEcCCCCCCCCCEEE---eChHHHHHHHHHHHHH-CCCCcEEEEeCCCCccHHHHHH
Confidence 55555555555454444467787776532111111221 2222222222222222 334455444332 22333
Q ss_pred HHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhccc-C-CCCeEEEEecC----------cccccCCCC-CceEE
Q 038855 161 SVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPA-A-AGFRKVILATN----------IAETSVTIP-GIKYV 227 (260)
Q Consensus 161 ~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~-~-~g~~kVlvaTd----------iae~gidIp-~V~~V 227 (260)
-+.+.|.+. ...+....+++..+.+.-.+.++.+ . ......|+|++ +.+.|+.+| +|..|
T Consensus 146 Gf~~al~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~di~vi 218 (289)
T 3k9c_A 146 GFLAAMDRH-------GLSASATVVTGGTTETEGAEGMHTLLEMPTPPTAVVAFNDRCATGVLDLLVRSGRDVPADISVV 218 (289)
T ss_dssp HHHHHHHHT-------TCGGGEEEECCCSSHHHHHHHHHHHHTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHHC-------CCCCCccEEECCCCHHHHHHHHHHHHcCCCCCCEEEECChHHHHHHHHHHHHcCCCCCCceEEE
Confidence 333444432 0122234556777766544443333 2 12445666654 457899998 56544
No 182
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=22.80 E-value=70 Score=26.96 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=10.9
Q ss_pred cccEEEEecCCcC
Q 038855 10 RYSVIIVDEAHER 22 (260)
Q Consensus 10 ~~~~vIlDEaher 22 (260)
+..+|||||+|..
T Consensus 107 ~~~viiiDe~~~l 119 (323)
T 1sxj_B 107 KHKIVILDEADSM 119 (323)
T ss_dssp CCEEEEEESGGGS
T ss_pred CceEEEEECcccC
Confidence 4889999999853
No 183
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=22.55 E-value=94 Score=21.81 Aligned_cols=35 Identities=6% Similarity=0.017 Sum_probs=28.1
Q ss_pred CCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCC
Q 038855 147 GDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLP 190 (260)
Q Consensus 147 g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~ 190 (260)
.+++|+|.+-.....++..|+.. ++.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~---------G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAE---------GYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHH---------TCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHc---------CCcEEEEcccHH
Confidence 68999999988888888888874 666677777764
No 184
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=22.41 E-value=46 Score=28.12 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=16.6
Q ss_pred CcccEEEEecC----CcCCcchhHHHHHH
Q 038855 9 SRYSVIIVDEA----HERTVHTDVLLGLL 33 (260)
Q Consensus 9 ~~~~~vIlDEa----her~~~~d~ll~~l 33 (260)
.+|++|||||+ +-+.+..+-++.++
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l 147 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISAL 147 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHH
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHH
Confidence 57999999999 33445555444444
No 185
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=21.94 E-value=29 Score=33.15 Aligned_cols=13 Identities=46% Similarity=0.703 Sum_probs=11.3
Q ss_pred CcccEEEEecCCc
Q 038855 9 SRYSVIIVDEAHE 21 (260)
Q Consensus 9 ~~~~~vIlDEahe 21 (260)
.+.+++|+||||.
T Consensus 172 ~~~~~vIiDEAHn 184 (551)
T 3crv_A 172 LREYMIVIDEAHN 184 (551)
T ss_dssp STTEEEEETTGGG
T ss_pred cCCeEEEEecccc
Confidence 4778999999995
No 186
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=21.85 E-value=99 Score=26.62 Aligned_cols=12 Identities=8% Similarity=0.368 Sum_probs=10.1
Q ss_pred cccEEEEecCCc
Q 038855 10 RYSVIIVDEAHE 21 (260)
Q Consensus 10 ~~~~vIlDEahe 21 (260)
+..+++|||+|.
T Consensus 98 ~~~vL~iDEi~~ 109 (324)
T 1l8q_A 98 SVDLLLLDDVQF 109 (324)
T ss_dssp TCSEEEEECGGG
T ss_pred CCCEEEEcCccc
Confidence 367999999985
No 187
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=21.65 E-value=1e+02 Score=28.97 Aligned_cols=15 Identities=33% Similarity=0.421 Sum_probs=11.6
Q ss_pred CcccEEEEecCCcCC
Q 038855 9 SRYSVIIVDEAHERT 23 (260)
Q Consensus 9 ~~~~~vIlDEaher~ 23 (260)
.+..+|||||+|...
T Consensus 147 ~~~~vliIDEid~l~ 161 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMS 161 (516)
T ss_dssp TTSEEEEECSGGGCC
T ss_pred CCCeEEEEECCCccc
Confidence 456799999999643
No 188
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=21.48 E-value=2.5e+02 Score=27.99 Aligned_cols=62 Identities=10% Similarity=0.085 Sum_probs=41.0
Q ss_pred cCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhccc--------CCCCeEEEEecC
Q 038855 144 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPA--------AAGFRKVILATN 213 (260)
Q Consensus 144 ~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~--------~~g~~kVlvaTd 213 (260)
...+++||.+| ..-+....+.+.+.. ..+.+..+||+.......+.+.-+ ..+...|+|+|-
T Consensus 284 ~~~~~~LIV~P-~sll~qW~~E~~~~~-------p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy 353 (800)
T 3mwy_W 284 RQNGPHIIVVP-LSTMPAWLDTFEKWA-------PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTY 353 (800)
T ss_dssp SCCSCEEEECC-TTTHHHHHHHHHHHS-------TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECT
T ss_pred CCCCCEEEEEC-chHHHHHHHHHHHHC-------CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecH
Confidence 45788999999 555666667776653 367889999987766554443322 223456888774
No 189
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=21.35 E-value=1.2e+02 Score=31.48 Aligned_cols=64 Identities=8% Similarity=-0.023 Sum_probs=45.8
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC-----cccc-c
Q 038855 145 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN-----IAET-S 218 (260)
Q Consensus 145 ~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd-----iae~-g 218 (260)
.++++|+.+|+++-+.+.++.+.+.+. .+..++|+.+.. ....|+|+|+ ...+ .
T Consensus 128 ~g~rvL~l~PtkaLa~Q~~~~l~~~~~---------~vglltGd~~~~-----------~~~~IvV~Tpe~L~~~L~~~~ 187 (1010)
T 2xgj_A 128 NKQRVIYTSPIKALSNQKYRELLAEFG---------DVGLMTGDITIN-----------PDAGCLVMTTEILRSMLYRGS 187 (1010)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHHS---------CEEEECSSCEEC-----------TTCSEEEEEHHHHHHHHHHTC
T ss_pred cCCeEEEECChHHHHHHHHHHHHHHhC---------CEEEEeCCCccC-----------CCCCEEEEcHHHHHHHHHcCc
Confidence 457899999999999999999988652 466788876532 2346888886 2233 3
Q ss_pred CCCCCceEEE
Q 038855 219 VTIPGIKYVI 228 (260)
Q Consensus 219 idIp~V~~VI 228 (260)
..+.++++||
T Consensus 188 ~~l~~l~lVV 197 (1010)
T 2xgj_A 188 EVMREVAWVI 197 (1010)
T ss_dssp TTGGGEEEEE
T ss_pred chhhcCCEEE
Confidence 4556777776
No 190
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=21.01 E-value=1.4e+02 Score=27.18 Aligned_cols=58 Identities=12% Similarity=0.013 Sum_probs=36.3
Q ss_pred HHHhhcCCCCEEEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccCCCCeEEEEecC
Q 038855 139 QVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAAAGFRKVILATN 213 (260)
Q Consensus 139 ~i~~~~~~g~iLVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~~g~~kVlvaTd 213 (260)
.+......+++||.+|+ .-+....+.+++.. ..+.+..+||+... ...+...|+|+|.
T Consensus 79 ~~~~~~~~~~~LIv~P~-~l~~qw~~e~~~~~-------~~~~v~~~~g~~~~---------~~~~~~~ivi~t~ 136 (500)
T 1z63_A 79 DAKKENELTPSLVICPL-SVLKNWEEELSKFA-------PHLRFAVFHEDRSK---------IKLEDYDIILTTY 136 (500)
T ss_dssp HHHHTTCCSSEEEEECS-TTHHHHHHHHHHHC-------TTSCEEECSSSTTS---------CCGGGSSEEEEEH
T ss_pred HHHhcCCCCCEEEEccH-HHHHHHHHHHHHHC-------CCceEEEEecCchh---------ccccCCcEEEeeH
Confidence 33333445789999995 46677777777653 25677888887632 1123446788775
No 191
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=20.02 E-value=1.3e+02 Score=26.27 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=12.5
Q ss_pred CCcccEEEEecCCcCC
Q 038855 8 LSRYSVIIVDEAHERT 23 (260)
Q Consensus 8 L~~~~~vIlDEaher~ 23 (260)
...++++|+||+|..+
T Consensus 108 ~~~~~viiiDe~~~l~ 123 (340)
T 1sxj_C 108 SKGFKLIILDEADAMT 123 (340)
T ss_dssp SCSCEEEEETTGGGSC
T ss_pred CCCceEEEEeCCCCCC
Confidence 3568999999998543
No 192
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=20.02 E-value=2.6e+02 Score=22.10 Aligned_cols=44 Identities=14% Similarity=0.270 Sum_probs=30.0
Q ss_pred EEEeCCHHHHHHHHHHHHHHHhcCccCCCCeEEEEecCCCCHHHHHHHhcccC
Q 038855 150 LVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMKVFAPAA 202 (260)
Q Consensus 150 LVFl~~~~~ve~v~~~L~~~l~~~~~~~~~~~~~~lh~~l~~~~r~~v~~~~~ 202 (260)
+||...-+-...+.+.+.. .+..++.+++......|.+-++.|.
T Consensus 6 vvfssdpeilkeivreikr---------qgvrvvllysdqdekrrrerleefe 49 (162)
T 2l82_A 6 VVFSSDPEILKEIVREIKR---------QGVRVVLLYSDQDEKRRRERLEEFE 49 (162)
T ss_dssp EEEESCHHHHHHHHHHHHH---------TTCEEEEEECCSCHHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHHHh---------CCeEEEEEecCchHHHHHHHHHHHH
Confidence 5666666655555555555 4888888888888777766666553
Done!