Query 038856
Match_columns 257
No_of_seqs 124 out of 1200
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 03:59:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038856.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038856hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00817 tpt Tpt phosphate/ph 100.0 1.1E-32 2.4E-37 237.5 22.7 237 20-257 57-299 (302)
2 PTZ00343 triose or hexose phos 100.0 3.9E-30 8.5E-35 225.4 26.0 228 25-253 111-350 (350)
3 KOG1444 Nucleotide-sugar trans 100.0 2.7E-30 6E-35 215.0 18.7 238 19-257 68-306 (314)
4 PF08449 UAA: UAA transporter 100.0 8.8E-29 1.9E-33 213.2 22.8 232 24-257 60-303 (303)
5 KOG1441 Glucose-6-phosphate/ph 100.0 3E-30 6.6E-35 219.0 11.6 230 26-257 81-313 (316)
6 PLN00411 nodulin MtN21 family 100.0 7.7E-26 1.7E-30 197.9 25.1 230 22-256 72-333 (358)
7 KOG1442 GDP-fucose transporter 99.9 1E-28 2.2E-33 200.2 3.3 236 20-256 94-332 (347)
8 PRK11272 putative DMT superfam 99.9 1.8E-24 4E-29 185.5 27.3 222 24-255 64-289 (292)
9 TIGR00950 2A78 Carboxylate/Ami 99.9 1.5E-24 3.2E-29 182.8 24.3 215 24-246 42-259 (260)
10 PRK11453 O-acetylserine/cystei 99.9 4E-24 8.7E-29 184.0 25.7 224 30-254 60-290 (299)
11 PRK11689 aromatic amino acid e 99.9 4E-24 8.6E-29 183.7 24.8 212 30-254 63-290 (295)
12 PRK10532 threonine and homoser 99.9 6.3E-23 1.4E-27 176.0 25.3 218 22-256 65-286 (293)
13 COG5070 VRG4 Nucleotide-sugar 99.9 1E-24 2.3E-29 172.2 12.6 230 24-255 64-300 (309)
14 PRK15430 putative chlorampheni 99.9 1.1E-22 2.3E-27 174.8 25.5 215 25-251 70-285 (296)
15 PF06027 DUF914: Eukaryotic pr 99.9 7.1E-23 1.5E-27 176.1 20.6 226 22-254 73-308 (334)
16 TIGR03340 phn_DUF6 phosphonate 99.9 7.2E-22 1.6E-26 168.5 19.8 217 24-248 59-280 (281)
17 KOG1443 Predicted integral mem 99.9 1.1E-21 2.5E-26 161.7 13.3 233 18-251 73-315 (349)
18 KOG1580 UDP-galactose transpor 99.9 1.2E-21 2.5E-26 156.2 10.1 226 22-249 79-311 (337)
19 COG0697 RhaT Permeases of the 99.9 4.8E-19 1E-23 150.9 25.8 214 30-255 72-291 (292)
20 KOG1581 UDP-galactose transpor 99.8 2.8E-19 6E-24 147.8 18.8 229 25-255 80-317 (327)
21 TIGR00688 rarD rarD protein. T 99.8 1.4E-17 3.1E-22 140.2 21.6 185 28-225 70-255 (256)
22 COG5006 rhtA Threonine/homoser 99.8 1E-17 2.3E-22 135.0 18.6 220 18-253 61-284 (292)
23 PF04142 Nuc_sug_transp: Nucle 99.8 2.4E-17 5.2E-22 137.2 21.0 212 24-241 13-243 (244)
24 KOG1582 UDP-galactose transpor 99.8 2.2E-18 4.8E-23 140.2 13.3 227 28-255 106-336 (367)
25 PF03151 TPT: Triose-phosphate 99.8 8.8E-18 1.9E-22 130.4 14.0 142 109-251 1-153 (153)
26 KOG2765 Predicted membrane pro 99.8 1.8E-17 3.9E-22 140.6 14.7 223 28-254 159-393 (416)
27 TIGR00776 RhaT RhaT L-rhamnose 99.8 3E-16 6.4E-21 134.4 21.8 210 27-253 58-290 (290)
28 KOG4510 Permease of the drug/m 99.7 6.3E-19 1.4E-23 143.0 3.0 218 29-255 98-329 (346)
29 KOG2234 Predicted UDP-galactos 99.7 1.1E-15 2.4E-20 129.7 22.3 225 25-255 89-326 (345)
30 COG2962 RarD Predicted permeas 99.7 3.2E-15 6.9E-20 123.6 23.4 216 26-253 70-285 (293)
31 KOG1583 UDP-N-acetylglucosamin 99.7 1.5E-17 3.3E-22 135.6 7.2 231 21-255 60-318 (330)
32 KOG3912 Predicted integral mem 99.6 1.8E-14 4E-19 118.0 15.4 220 30-252 88-335 (372)
33 TIGR00803 nst UDP-galactose tr 99.5 6.8E-13 1.5E-17 109.4 12.0 192 52-249 2-222 (222)
34 PF00892 EamA: EamA-like trans 99.3 3.2E-11 6.9E-16 89.7 10.6 124 118-250 1-125 (126)
35 KOG4314 Predicted carbohydrate 99.3 7.1E-12 1.5E-16 98.1 6.8 228 20-254 44-279 (290)
36 KOG2766 Predicted membrane pro 99.3 1.8E-13 3.9E-18 110.8 -2.9 202 41-253 91-301 (336)
37 COG2510 Predicted membrane pro 99.3 4.2E-11 9.2E-16 87.2 9.5 134 110-250 5-138 (140)
38 PF06800 Sugar_transport: Suga 99.1 4.3E-08 9.3E-13 81.9 19.9 209 26-248 43-268 (269)
39 PRK15430 putative chlorampheni 99.0 1.7E-08 3.7E-13 86.8 16.7 143 102-251 2-145 (296)
40 PF13536 EmrE: Multidrug resis 99.0 9.3E-10 2E-14 81.0 7.0 79 26-105 32-111 (113)
41 TIGR00688 rarD rarD protein. T 99.0 2.4E-08 5.3E-13 84.0 16.2 140 108-251 2-142 (256)
42 TIGR03340 phn_DUF6 phosphonate 98.9 6.7E-08 1.4E-12 82.5 16.0 134 110-252 3-136 (281)
43 PF00892 EamA: EamA-like trans 98.7 2.5E-08 5.5E-13 73.9 6.4 79 20-98 45-124 (126)
44 PLN00411 nodulin MtN21 family 98.7 1.1E-06 2.4E-11 77.4 16.0 138 108-251 13-156 (358)
45 PRK02971 4-amino-4-deoxy-L-ara 98.7 1.1E-06 2.3E-11 66.0 13.6 124 108-257 2-128 (129)
46 PRK15051 4-amino-4-deoxy-L-ara 98.6 5.8E-07 1.3E-11 65.7 9.1 64 36-99 45-108 (111)
47 PF05653 Mg_trans_NIPA: Magnes 98.6 8.6E-07 1.9E-11 76.2 11.3 214 36-256 58-297 (300)
48 COG2510 Predicted membrane pro 98.5 1.4E-07 3.1E-12 69.0 3.8 77 23-99 62-138 (140)
49 PF13536 EmrE: Multidrug resis 98.4 6.6E-06 1.4E-10 60.4 11.9 106 145-255 4-110 (113)
50 PRK11272 putative DMT superfam 98.4 2.4E-05 5.2E-10 67.1 16.7 129 111-251 11-141 (292)
51 PTZ00343 triose or hexose phos 98.3 4.2E-05 9E-10 67.4 16.8 126 118-251 59-186 (350)
52 TIGR00950 2A78 Carboxylate/Ami 98.3 1.5E-05 3.2E-10 67.0 13.0 115 123-251 4-119 (260)
53 PRK11453 O-acetylserine/cystei 98.3 3.5E-05 7.5E-10 66.4 15.5 124 111-251 7-132 (299)
54 COG2962 RarD Predicted permeas 98.3 3.6E-05 7.8E-10 64.5 14.3 141 106-253 5-146 (293)
55 TIGR00817 tpt Tpt phosphate/ph 98.3 5.4E-05 1.2E-09 65.2 15.7 123 120-250 14-136 (302)
56 PRK11689 aromatic amino acid e 98.3 4.8E-05 1E-09 65.4 15.0 130 108-251 4-137 (295)
57 PRK13499 rhamnose-proton sympo 98.1 0.003 6.4E-08 55.2 22.5 227 23-252 68-342 (345)
58 PRK02971 4-amino-4-deoxy-L-ara 98.0 3.8E-05 8.3E-10 57.6 7.9 71 31-101 50-123 (129)
59 TIGR00776 RhaT RhaT L-rhamnose 98.0 0.00018 4E-09 61.7 12.8 132 109-253 2-138 (290)
60 PRK15051 4-amino-4-deoxy-L-ara 98.0 0.00011 2.5E-09 53.6 9.6 55 196-251 55-109 (111)
61 PF08449 UAA: UAA transporter 97.9 0.00034 7.3E-09 60.4 14.2 125 121-254 13-139 (303)
62 KOG2922 Uncharacterized conser 97.9 5.8E-05 1.3E-09 64.0 7.8 216 32-254 67-309 (335)
63 COG0697 RhaT Permeases of the 97.9 0.0011 2.4E-08 56.1 15.8 140 107-255 6-147 (292)
64 PRK10452 multidrug efflux syst 97.9 9.2E-05 2E-09 54.7 7.6 70 31-100 33-103 (120)
65 PRK10532 threonine and homoser 97.8 0.00016 3.4E-09 62.2 8.9 74 26-99 206-280 (293)
66 PF04657 DUF606: Protein of un 97.8 0.0023 4.9E-08 48.7 14.2 131 110-247 3-137 (138)
67 PF06027 DUF914: Eukaryotic pr 97.8 0.00099 2.1E-08 58.0 13.7 140 108-253 13-153 (334)
68 PRK09541 emrE multidrug efflux 97.7 0.00029 6.2E-09 51.3 7.9 66 35-100 37-103 (110)
69 PRK10650 multidrug efflux syst 97.6 0.00038 8.2E-09 50.5 7.9 66 33-98 40-106 (109)
70 PRK11431 multidrug efflux syst 97.6 0.00041 8.8E-09 50.0 8.0 66 33-98 34-100 (105)
71 COG2076 EmrE Membrane transpor 97.6 0.00037 7.9E-09 49.9 7.4 67 33-99 35-102 (106)
72 COG4975 GlcU Putative glucose 97.5 1.6E-05 3.5E-10 64.8 -0.9 215 24-253 55-287 (288)
73 PF03151 TPT: Triose-phosphate 97.5 0.00054 1.2E-08 52.6 7.7 72 26-97 79-150 (153)
74 PRK09541 emrE multidrug efflux 97.3 0.0029 6.3E-08 46.0 9.0 57 196-253 48-105 (110)
75 PF00893 Multi_Drug_Res: Small 97.2 0.0017 3.8E-08 45.8 6.8 56 36-91 37-93 (93)
76 COG2076 EmrE Membrane transpor 97.2 0.0048 1E-07 44.2 8.7 57 196-253 48-105 (106)
77 PF04142 Nuc_sug_transp: Nucle 97.1 0.0025 5.5E-08 53.2 8.1 76 178-254 17-92 (244)
78 PRK13499 rhamnose-proton sympo 97.0 0.013 2.7E-07 51.3 12.0 137 107-251 6-153 (345)
79 PRK10452 multidrug efflux syst 97.0 0.008 1.7E-07 44.4 8.6 57 196-253 48-105 (120)
80 PRK11431 multidrug efflux syst 96.9 0.01 2.2E-07 42.8 8.6 56 196-252 47-103 (105)
81 PRK10650 multidrug efflux syst 96.9 0.048 1E-06 39.6 11.8 54 196-250 53-107 (109)
82 COG5006 rhtA Threonine/homoser 96.8 0.0049 1.1E-07 50.9 7.0 73 24-96 205-278 (292)
83 PF05653 Mg_trans_NIPA: Magnes 96.7 0.0068 1.5E-07 52.2 7.5 117 106-250 5-121 (300)
84 COG3238 Uncharacterized protei 96.4 0.26 5.7E-06 37.7 13.5 140 108-253 5-148 (150)
85 PF10639 UPF0546: Uncharacteri 96.1 0.019 4.2E-07 41.8 5.8 67 31-97 44-111 (113)
86 KOG2234 Predicted UDP-galactos 96.0 0.36 7.7E-06 42.0 14.1 139 113-252 20-165 (345)
87 PF00893 Multi_Drug_Res: Small 96.0 0.032 6.9E-07 39.3 6.5 46 196-242 47-93 (93)
88 KOG4510 Permease of the drug/m 96.0 0.0015 3.2E-08 54.3 -0.7 71 181-252 100-170 (346)
89 PF06800 Sugar_transport: Suga 94.7 0.094 2E-06 44.3 6.2 61 29-89 196-256 (269)
90 KOG2765 Predicted membrane pro 93.8 0.053 1.1E-06 47.4 2.9 75 179-254 160-234 (416)
91 COG4975 GlcU Putative glucose 93.0 0.049 1.1E-06 44.9 1.4 132 109-254 3-139 (288)
92 TIGR00803 nst UDP-galactose tr 93.0 0.14 2.9E-06 42.0 4.1 62 36-97 160-221 (222)
93 PF10639 UPF0546: Uncharacteri 90.7 0.63 1.4E-05 33.9 4.8 51 197-248 60-111 (113)
94 KOG1580 UDP-galactose transpor 90.2 0.33 7.3E-06 39.9 3.3 72 26-97 239-310 (337)
95 KOG1441 Glucose-6-phosphate/ph 90.0 0.35 7.5E-06 41.9 3.5 105 123-233 32-137 (316)
96 KOG1444 Nucleotide-sugar trans 89.5 13 0.00028 32.1 13.0 133 109-252 13-150 (314)
97 COG5070 VRG4 Nucleotide-sugar 88.7 1.3 2.8E-05 36.3 5.6 75 23-97 219-293 (309)
98 KOG4314 Predicted carbohydrate 88.5 0.23 5E-06 39.7 1.3 62 192-254 67-128 (290)
99 PF07857 DUF1632: CEO family ( 87.5 1.7 3.6E-05 36.5 5.9 133 109-256 1-139 (254)
100 PF04657 DUF606: Protein of un 87.3 2.6 5.5E-05 31.9 6.3 64 34-97 70-138 (138)
101 KOG1581 UDP-galactose transpor 84.2 27 0.00057 30.2 11.5 128 119-255 25-159 (327)
102 PF00909 Ammonium_transp: Ammo 83.8 33 0.00071 30.9 14.0 84 67-153 237-322 (399)
103 KOG2922 Uncharacterized conser 82.0 0.77 1.7E-05 39.5 1.5 116 105-248 18-133 (335)
104 PF06379 RhaT: L-rhamnose-prot 80.0 41 0.00089 29.5 11.9 140 107-253 6-155 (344)
105 PF02694 UPF0060: Uncharacteri 78.0 3 6.5E-05 29.9 3.2 44 57-100 60-103 (107)
106 PRK02237 hypothetical protein; 77.6 3.8 8.2E-05 29.4 3.6 44 57-100 62-105 (109)
107 PRK02237 hypothetical protein; 77.6 6.1 0.00013 28.4 4.6 48 206-254 61-108 (109)
108 KOG3912 Predicted integral mem 74.9 21 0.00046 30.5 7.8 55 196-251 104-158 (372)
109 PF02694 UPF0060: Uncharacteri 72.9 7.1 0.00015 28.0 4.0 46 207-253 60-105 (107)
110 PF04342 DUF486: Protein of un 69.9 19 0.00042 25.8 5.6 60 38-97 45-105 (108)
111 PF05297 Herpes_LMP1: Herpesvi 66.4 1.9 4.1E-05 36.5 0.0 94 52-146 47-144 (381)
112 COG1742 Uncharacterized conser 66.2 6.7 0.00015 27.9 2.7 40 61-100 65-104 (109)
113 COG3169 Uncharacterized protei 65.6 21 0.00045 25.3 4.9 40 209-249 70-113 (116)
114 KOG4831 Unnamed protein [Funct 63.4 17 0.00036 26.1 4.2 67 31-97 55-122 (125)
115 PF07444 Ycf66_N: Ycf66 protei 56.5 15 0.00033 25.2 3.0 27 230-256 4-30 (84)
116 KOG2766 Predicted membrane pro 56.0 2.6 5.6E-05 35.3 -1.0 65 184-249 84-148 (336)
117 TIGR01167 LPXTG_anchor LPXTG-m 55.3 13 0.00028 20.3 2.1 15 230-244 9-23 (34)
118 TIGR03644 marine_trans_1 proba 46.8 2.2E+02 0.0048 25.7 15.9 86 64-152 253-339 (404)
119 KOG1442 GDP-fucose transporter 46.2 7.2 0.00016 33.1 0.2 109 138-248 61-171 (347)
120 PF09930 DUF2162: Predicted tr 44.6 1.4E+02 0.0031 24.6 7.5 72 27-98 101-175 (224)
121 PF04342 DUF486: Protein of un 44.5 1.2E+02 0.0025 21.9 8.7 28 219-247 77-104 (108)
122 TIGR00905 2A0302 transporter, 43.2 2.6E+02 0.0057 25.5 16.9 23 234-256 417-439 (473)
123 COG0004 AmtB Ammonia permease 42.6 2.6E+02 0.0057 25.3 13.6 89 63-154 239-329 (409)
124 KOG1443 Predicted integral mem 39.9 1.3E+02 0.0027 26.3 6.6 65 34-98 249-313 (349)
125 cd01324 cbb3_Oxidase_CcoQ Cyto 38.1 34 0.00074 20.7 2.2 21 236-256 16-36 (48)
126 KOG1582 UDP-galactose transpor 33.7 3.1E+02 0.0067 23.6 7.9 56 52-107 284-339 (367)
127 COG3169 Uncharacterized protei 33.6 76 0.0016 22.5 3.6 30 69-98 84-113 (116)
128 PF05545 FixQ: Cbb3-type cytoc 31.6 43 0.00092 20.2 2.0 21 236-256 15-35 (49)
129 COG1742 Uncharacterized conser 31.2 42 0.00091 24.0 2.1 45 209-254 63-107 (109)
130 PF06379 RhaT: L-rhamnose-prot 30.4 3.8E+02 0.0083 23.7 21.1 105 24-128 69-193 (344)
131 PF15055 DUF4536: Domain of un 27.5 47 0.001 20.1 1.5 22 236-257 8-29 (47)
132 COG3238 Uncharacterized protei 27.4 2.1E+02 0.0045 22.0 5.5 64 35-98 76-144 (150)
133 PRK10435 cadB lysine/cadaverin 26.8 4.7E+02 0.01 23.5 16.8 17 238-254 412-428 (435)
134 COG2211 MelB Na+/melibiose sym 26.2 5.3E+02 0.012 23.9 11.2 75 51-125 44-131 (467)
135 TIGR00836 amt ammonium transpo 26.1 5E+02 0.011 23.5 15.5 26 182-207 359-384 (403)
136 PRK10655 potE putrescine trans 24.5 5.2E+02 0.011 23.2 9.4 16 107-122 411-426 (438)
137 TIGR00909 2A0306 amino acid tr 23.9 5.2E+02 0.011 23.0 8.8 16 107-122 413-428 (429)
138 PF11384 DUF3188: Protein of u 23.7 72 0.0016 19.4 1.9 22 233-254 27-48 (49)
139 PF06570 DUF1129: Protein of u 23.0 4E+02 0.0087 21.3 9.3 24 107-130 178-201 (206)
140 PRK15462 dipeptide/tripeptide 22.6 6.3E+02 0.014 23.5 11.0 41 57-97 310-359 (493)
141 COG0382 UbiA 4-hydroxybenzoate 22.5 4.8E+02 0.01 22.1 10.6 22 110-131 169-190 (289)
142 TIGR03810 arg_ornith_anti argi 22.4 5.9E+02 0.013 23.1 16.6 23 233-255 411-433 (468)
143 PF10855 DUF2648: Protein of u 22.3 40 0.00086 18.5 0.5 18 239-256 6-23 (33)
144 PF10101 DUF2339: Predicted me 21.6 7.6E+02 0.016 24.0 15.1 19 81-99 4-22 (745)
145 PF08693 SKG6: Transmembrane a 21.2 62 0.0013 18.8 1.2 18 237-254 21-38 (40)
146 PRK10213 nepI ribonucleoside t 20.4 5.9E+02 0.013 22.3 14.1 75 21-95 12-97 (394)
147 PRK12437 prolipoprotein diacyl 20.1 1E+02 0.0022 26.1 2.9 23 231-253 235-257 (269)
No 1
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=100.00 E-value=1.1e-32 Score=237.46 Aligned_cols=237 Identities=18% Similarity=0.189 Sum_probs=196.8
Q ss_pred CCCcChhHHHHHhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhc
Q 038856 20 TTLVPLKTLVHTLPLALSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAG 99 (257)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~ 99 (257)
+++.++++++.+++.|++++.++.+.|.+++|+++++++++++++|+++++++++++|||++++++.+++++++|+.+..
T Consensus 57 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 57 RLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhh-cCCC---CCch
Q 038856 100 ARDLSFDAYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTM-NFPL---LFYP 175 (257)
Q Consensus 100 ~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~-~~~~---~~~~ 175 (257)
..|.+.+..|+.+++++++++|.|+++.||..++.+.|+.+++.|+.+.+.+.+.|.....++..... +... ..+.
T Consensus 137 ~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~ 216 (302)
T TIGR00817 137 DTELSFNWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNV 216 (302)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCc
Confidence 66777788899999999999999999999987755678999999999999998888876555422111 1100 0111
Q ss_pred -hHHHHHHHHHH-HHHHHHHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhhh
Q 038856 176 -GFQVVMLLSCI-MAFLINYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYCK 253 (257)
Q Consensus 176 -~~~~~l~~~~~-~~~~~~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~k 253 (257)
..+...+..+. .....+...+.+++++||+++++.++++|+.++++|++++|| ++|+.|++|..++++|+++|++.|
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge-~lt~~~~~G~~lil~Gv~l~~~~k 295 (302)
T TIGR00817 217 TKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGT-KISPQQVFGTGIAIAGVFLYSRVK 295 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCC-CCchhHHHHHHHHHHHHHHHHHHh
Confidence 12222333333 222233344679999999999999999999999999999996 999999999999999999999998
Q ss_pred hcCC
Q 038856 254 LQGK 257 (257)
Q Consensus 254 ~~~~ 257 (257)
+||+
T Consensus 296 ~~~~ 299 (302)
T TIGR00817 296 AQKP 299 (302)
T ss_pred ccCc
Confidence 7764
No 2
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.98 E-value=3.9e-30 Score=225.38 Aligned_cols=228 Identities=18% Similarity=0.201 Sum_probs=192.8
Q ss_pred hhHHHHHhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhcccccc
Q 038856 25 LKTLVHTLPLALSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGARDLS 104 (257)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~~~~~ 104 (257)
++++++.++.|++........+.|+++++++++++++++.|+++++++++++|||++++++++++++++|+.+...+|.+
T Consensus 111 ~~~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~ 190 (350)
T PTZ00343 111 KLFLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELH 190 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccch
Confidence 45789999999998777777889999999999999999999999999999999999999999999999999998888888
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhcccCC-----CChhhHHHHHHHHHHHHHHHHHHhcCchh--hhh-cC----CCC
Q 038856 105 FDAYGYAVVFIANICTAAYLAFISRIGRSSG-----LSSFGLMWCNGIICTPILLFWTSFRGDLE--VTM-NF----PLL 172 (257)
Q Consensus 105 ~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~~~~--~~~-~~----~~~ 172 (257)
+++.|++++++|++++|.++++.||..++.+ .++.+...++.+.+.++++|.....|+.. ... +. ...
T Consensus 191 ~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~ 270 (350)
T PTZ00343 191 FTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNY 270 (350)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhccccc
Confidence 8989999999999999999999999886542 56766777778899999988876443321 111 10 111
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhh
Q 038856 173 FYPGFQVVMLLSCIMAFLINYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYC 252 (257)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~ 252 (257)
.....+..++.+++..+..+.+.+.++++++|.++++.+++||++++++|++++|| ++|+.+++|.++++.|+++|++.
T Consensus 271 ~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge-~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 271 TKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQT-QVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCC-CCchHhHHHHHHHHHHHHHHhhc
Confidence 11122334566677777777777889999999999999999999999999999996 99999999999999999999987
Q ss_pred h
Q 038856 253 K 253 (257)
Q Consensus 253 k 253 (257)
|
T Consensus 350 k 350 (350)
T PTZ00343 350 K 350 (350)
T ss_pred C
Confidence 5
No 3
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.7e-30 Score=214.99 Aligned_cols=238 Identities=34% Similarity=0.578 Sum_probs=216.3
Q ss_pred CCCCcChhHHHHHhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhh
Q 038856 19 PTTLVPLKTLVHTLPLALSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLA 98 (257)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~ 98 (257)
+.+++++++.|+++|.++++.++.+++..+++|+|++.++++|+.+|+++++.+.+++|+|+++..+.++..+.+|....
T Consensus 68 ~~~~l~~~~~kk~~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~ 147 (314)
T KOG1444|consen 68 NFRPLDLRTAKKWFPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAA 147 (314)
T ss_pred ecCCcChHHHHHHccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhh
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhh-hhcCCCCCchhH
Q 038856 99 GARDLSFDAYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEV-TMNFPLLFYPGF 177 (257)
Q Consensus 99 ~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~ 177 (257)
..+|.++|..|+.|++.+.++.+.+.+..||..+..+.+.+.+++|+++++.+.+.......||++. ..+++.+.++.+
T Consensus 148 ~~~d~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~ 227 (314)
T KOG1444|consen 148 AFTDLSFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSV 227 (314)
T ss_pred ccccceecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhH
Confidence 9999999988999999999999999999999988778899999999999999999999988999772 134444566778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhhhhcCC
Q 038856 178 QVVMLLSCIMAFLINYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYCKLQGK 257 (257)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~k~~~~ 257 (257)
+..+.++|++++.++|+.+++.+..|+++.+++| ++-.....++.+.++|+++++..++|..+.+.|.++|++.+.|+|
T Consensus 228 ~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG-~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k 306 (314)
T KOG1444|consen 228 LVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVG-AKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKK 306 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccceeehh-hhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhc
Confidence 9999999999999999999999999999999999 555555556666666679999999999999999999999986553
No 4
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.97 E-value=8.8e-29 Score=213.23 Aligned_cols=232 Identities=23% Similarity=0.344 Sum_probs=206.3
Q ss_pred ChhHHHHHhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhccccc
Q 038856 24 PLKTLVHTLPLALSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGARDL 103 (257)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~~~~ 103 (257)
+++.++++++.++++..+..++|.|++|+|.++.+++|++.|+++++++.+++|||++++++.++++.++|+++....|.
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~ 139 (303)
T PF08449_consen 60 RKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDS 139 (303)
T ss_pred CcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccc
Confidence 44556888999999999999999999999999999999999999999999999999999999999999999999865543
Q ss_pred c----c------chhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHh--cCchhhhhcCCC
Q 038856 104 S----F------DAYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSF--RGDLEVTMNFPL 171 (257)
Q Consensus 104 ~----~------~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~--~~~~~~~~~~~~ 171 (257)
+ . +..|+++.+++.++.|++.+++||..++++.+++++++|.++++.+.+.+.... .+|..+..++..
T Consensus 140 ~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~ 219 (303)
T PF08449_consen 140 SSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFIS 219 (303)
T ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHH
Confidence 1 1 123999999999999999999999999999999999999999999999888877 677665544443
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHh
Q 038856 172 LFYPGFQVVMLLSCIMAFLINYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAY 251 (257)
Q Consensus 172 ~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~ 251 (257)
.++..+..++..++.+...+...+..+++.||++.++...++++.++++++++||+ ++++.||.|.++++.|..+|++
T Consensus 220 -~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~-~~~~~~~~G~~lv~~g~~~~~~ 297 (303)
T PF08449_consen 220 -AHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGH-PLSPLQWIGIVLVFAGIFLYSY 297 (303)
T ss_pred -HhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCC-cCChHHHHHHHHhHHHHHHHHH
Confidence 34556777788888888878888889999999999999999999999999999995 9999999999999999999999
Q ss_pred hhhcCC
Q 038856 252 CKLQGK 257 (257)
Q Consensus 252 ~k~~~~ 257 (257)
.|+|+|
T Consensus 298 ~~~k~~ 303 (303)
T PF08449_consen 298 AKKKKN 303 (303)
T ss_pred hhccCC
Confidence 999986
No 5
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.97 E-value=3e-30 Score=219.03 Aligned_cols=230 Identities=27% Similarity=0.453 Sum_probs=204.1
Q ss_pred hHHHHHhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhccccccc
Q 038856 26 KTLVHTLPLALSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGARDLSF 105 (257)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~~~~~~ 105 (257)
..++..+|+|+.++.+..+.|.|++++|++++|++|.++|+++.++++++.+|++++..+++++....|+.+....|.++
T Consensus 81 ~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~f 160 (316)
T KOG1441|consen 81 LPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSF 160 (316)
T ss_pred cchHHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhc--ccCCCChhhHHHHHHHHHHHHHH-HHHHhcCchhhhhcCCCCCchhHHHHHH
Q 038856 106 DAYGYAVVFIANICTAAYLAFISRIG--RSSGLSSFGLMWCNGIICTPILL-FWTSFRGDLEVTMNFPLLFYPGFQVVML 182 (257)
Q Consensus 106 ~~~G~~~~l~a~~~~a~~~v~~~~~~--~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 182 (257)
|+.|...++++.+..+.++++.|+++ ++.+.|+.++++|+++.+..+++ |+....+...........++..++..+.
T Consensus 161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (316)
T KOG1441|consen 161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLL 240 (316)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHH
Confidence 99999999999999999999999988 56789999999999999999999 8765433211100011123444455555
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhhhhcCC
Q 038856 183 LSCIMAFLINYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYCKLQGK 257 (257)
Q Consensus 183 ~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~k~~~~ 257 (257)
.+ ++++..|.+.+.+++++||+++++.+++|.+..++.|+++|+| +.|+.|.+|+++.+.|+++|++.|.+++
T Consensus 241 ~s-v~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~-pvt~~n~~G~~iai~Gv~~Y~~~k~~~~ 313 (316)
T KOG1441|consen 241 NS-VLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGN-PVTFLNALGYAIAILGVFLYSRAKLKEK 313 (316)
T ss_pred HH-HHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecC-CCchhhHHHHHHHHHHHHHHHHHhhhhh
Confidence 55 9999999999999999999999999999999999999999997 9999999999999999999999998754
No 6
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.95 E-value=7.7e-26 Score=197.95 Aligned_cols=230 Identities=15% Similarity=0.148 Sum_probs=177.5
Q ss_pred CcChhHHHHHhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHH------hCcccCcchhHHHHHHHhhh
Q 038856 22 LVPLKTLVHTLPLALSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLL------TGQKHSLPVVGSVGIILLGA 95 (257)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~------~~e~~~~~~~~~~~~~~~Gv 95 (257)
+.+++++.+....|++....+.+.+.+++|++++++.++.++.|++++++++++ +|||++++++.+++++++|+
T Consensus 72 ~~~~~~~~~l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv 151 (358)
T PLN00411 72 PLSVSILSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGA 151 (358)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHH
Confidence 345777788888887775667788999999999999999999999999999999 69999999999999999999
Q ss_pred hhhccc-cc-----------------------ccc-hhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHH
Q 038856 96 FLAGAR-DL-----------------------SFD-AYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICT 150 (257)
Q Consensus 96 ~~~~~~-~~-----------------------~~~-~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (257)
.++..+ +. ..+ ..|+.+++.++++||.|++.+|+..++++ +.....+++..++.
T Consensus 152 ~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~-~~~~~t~~~~~~~~ 230 (358)
T PLN00411 152 LVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYP-AAFTVSFLYTVCVS 230 (358)
T ss_pred HHHHHccCcccccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cHhHHHHHHHHHHH
Confidence 886531 11 112 34999999999999999999999877542 23455666666555
Q ss_pred HHHHHHHHhcCchhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHH-HHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCc
Q 038856 151 PILLFWTSFRGDLEVTMNFPLLFYPGFQVVMLLSCIMAFLINYYV-FLNTILNSALTQTICGNLKDLLTIGLGWLLFGGL 229 (257)
Q Consensus 151 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~ 229 (257)
..+.+.....++.+. ......++.. ...+++.++.. ..+|.. ++++++.+|.+++++.+++|++++++|++++||
T Consensus 231 ~~~~~~~l~~~~~~~-~~~~~~~~~~-~~~i~y~~i~t-~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE- 306 (358)
T PLN00411 231 IVTSMIGLVVEKNNP-SVWIIHFDIT-LITIVTMAIIT-SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLND- 306 (358)
T ss_pred HHHHHHHHHHccCCc-ccceeccchH-HHHHHHHHHHH-HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCC-
Confidence 555444443322110 0111112333 23466666654 456655 789999999999999999999999999999996
Q ss_pred CcchhhhhHHHHHHHHHHHHHhhhhcC
Q 038856 230 PFDLFNIVGQALGFLGSCFYAYCKLQG 256 (257)
Q Consensus 230 ~~t~~~~~G~~li~~g~~~~~~~k~~~ 256 (257)
++++.+++|++++++|+++.++.|++|
T Consensus 307 ~lt~~~~iG~~LIl~Gv~l~~~~~~~~ 333 (358)
T PLN00411 307 SLYLGCLIGGILITLGFYAVMWGKANE 333 (358)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999887664
No 7
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1e-28 Score=200.22 Aligned_cols=236 Identities=21% Similarity=0.284 Sum_probs=219.5
Q ss_pred CCCcChhHHHHHhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhc
Q 038856 20 TTLVPLKTLVHTLPLALSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAG 99 (257)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~ 99 (257)
+.+++.+..++++|+++.+..++.++|++++|.+++++++.|+++.+|+.++.++++|+|-+.....++++++.|-.+-.
T Consensus 94 ~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGv 173 (347)
T KOG1442|consen 94 SLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGV 173 (347)
T ss_pred cccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheecc
Confidence 34578889999999999999999999999999999999999999999999999999999999999999999999988755
Q ss_pred ccc---cccchhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchh
Q 038856 100 ARD---LSFDAYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFYPG 176 (257)
Q Consensus 100 ~~~---~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 176 (257)
-.| ...++.|.++++.+.++-|+..+++||.....+-.-|.+.+|+++.+.+.++|...+.||.+....+++.++..
T Consensus 174 dqE~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~ 253 (347)
T KOG1442|consen 174 DQEGSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIK 253 (347)
T ss_pred ccccccCccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHH
Confidence 444 45678999999999999999999999887655556789999999999999999999999999999999988999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhhhhcC
Q 038856 177 FQVVMLLSCIMAFLINYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYCKLQG 256 (257)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~k~~~ 256 (257)
+|..+.++|++++.++|...+.+|-+||+++++.+..|.+...+++..+++| ..+...|-|-++++.|..+|++.|++|
T Consensus 254 Fw~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E-~ks~lwwtsn~~vLvgs~~YT~vk~~e 332 (347)
T KOG1442|consen 254 FWILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSE-TKSGLWWTSNIVVLVGSLAYTLVKEHE 332 (347)
T ss_pred HHHHHHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHH-HhhhheeeeeEEEEehhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999996 999999999999999999999988643
No 8
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.94 E-value=1.8e-24 Score=185.50 Aligned_cols=222 Identities=14% Similarity=0.073 Sum_probs=183.3
Q ss_pred ChhHHHHHhHHHHHH-HHHHHHhhhhh-ccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhccc
Q 038856 24 PLKTLVHTLPLALSY-LLYMLITMEAV-RGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGAR 101 (257)
Q Consensus 24 ~~~~~~~~~~~~~~~-~~~~~~~~~al-~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~~ 101 (257)
+++++++....|.+. ...+.+.+.+. ++++++.++++.++.|+++++++++ +|||++++++.++.++++|+.++..+
T Consensus 64 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~ 142 (292)
T PRK11272 64 TLRQWLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG 142 (292)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence 466777777888665 56677888888 9999999999999999999999986 69999999999999999999887543
Q ss_pred -ccccchhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchhHHHH
Q 038856 102 -DLSFDAYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFYPGFQVV 180 (257)
Q Consensus 102 -~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (257)
+.+.+..|+.+++.++++||.+.+..||..++ ++.....++...+.+.+.+.....++. .....+...|..
T Consensus 143 ~~~~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 214 (292)
T PRK11272 143 GNLSGNPWGAILILIASASWAFGSVWSSRLPLP---VGMMAGAAEMLAAGVVLLIASLLSGER-----LTALPTLSGFLA 214 (292)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHHcCCc-----ccccCCHHHHHH
Confidence 34556679999999999999999999987542 334556778777777777766544321 111134556788
Q ss_pred HHHHHHHHHHHHHHH-HHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhhhhc
Q 038856 181 MLLSCIMAFLINYYV-FLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYCKLQ 255 (257)
Q Consensus 181 l~~~~~~~~~~~~~~-~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~k~~ 255 (257)
+++.++++....+.. ++++|+.++.+.+.+.+++|+.+++++++++|| ++|+.+++|..+++.|+++.++.++|
T Consensus 215 i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E-~~t~~~iiG~~lIi~gv~~~~~~~~~ 289 (292)
T PRK11272 215 LGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGE-TLSPIEWLALGVIVFAVVLVTLGKYL 289 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888899888887766 789999999999999999999999999999996 99999999999999999998877665
No 9
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.94 E-value=1.5e-24 Score=182.83 Aligned_cols=215 Identities=19% Similarity=0.189 Sum_probs=179.6
Q ss_pred ChhHHHHHhHHHHH-HHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhcccc
Q 038856 24 PLKTLVHTLPLALS-YLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGARD 102 (257)
Q Consensus 24 ~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~~~ 102 (257)
++++++..+..+.+ ....+.+.+.|++|++++++.++.++.|+++++++++++|||++++++.+++++++|+.++..++
T Consensus 42 ~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~ 121 (260)
T TIGR00950 42 PLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDG 121 (260)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCC
Confidence 45556666666654 57888999999999999999999999999999999999999999999999999999998875443
Q ss_pred -cccchhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchhHHHHH
Q 038856 103 -LSFDAYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFYPGFQVVM 181 (257)
Q Consensus 103 -~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 181 (257)
.+.+..|+.+++.++++++.+.+..|+..++.+.++.+...+....+.+.+.+.....++.. ..+...|..+
T Consensus 122 ~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~~~~~~~~~~ 194 (260)
T TIGR00950 122 NLSINPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-------QALSLQWGAL 194 (260)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-------CcchHHHHHH
Confidence 44556899999999999999999999988755444555555677788888877766544321 1244456778
Q ss_pred HHHHHHHHHHHHHH-HHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHH
Q 038856 182 LLSCIMAFLINYYV-FLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGS 246 (257)
Q Consensus 182 ~~~~~~~~~~~~~~-~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~ 246 (257)
++.++++...++.. ++++|+.++.+++.+.+++|+++++++++++|| ++++.+++|..+++.|+
T Consensus 195 ~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E-~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 195 LYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGE-TLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHhc
Confidence 88888887777776 889999999999999999999999999999996 99999999999999886
No 10
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.94 E-value=4e-24 Score=183.98 Aligned_cols=224 Identities=10% Similarity=0.079 Sum_probs=171.6
Q ss_pred HHhHHHHHH-HHHHHHhhhhhcc-ccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhcccc---cc
Q 038856 30 HTLPLALSY-LLYMLITMEAVRG-INVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGARD---LS 104 (257)
Q Consensus 30 ~~~~~~~~~-~~~~~~~~~al~~-~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~~~---~~ 104 (257)
..+..+... .....+.+.+++| .|++.+.++.++.|+++.+++++++|||++++++.+++++++|+.++..++ .+
T Consensus 60 ~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~ 139 (299)
T PRK11453 60 LLLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQH 139 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcc
Confidence 344445543 3445566788887 689999999999999999999999999999999999999999998876542 23
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhcccCC-CChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchhHHHHHHH
Q 038856 105 FDAYGYAVVFIANICTAAYLAFISRIGRSSG-LSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFYPGFQVVMLL 183 (257)
Q Consensus 105 ~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 183 (257)
.+..|+.+++.+++++|.|++..||..++.+ .+......++...+...+.......++.....+.....++..|..+++
T Consensus 140 ~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 219 (299)
T PRK11453 140 VAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMY 219 (299)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHH
Confidence 3457999999999999999999999765322 222334455555544433333322222111001011245667889999
Q ss_pred HHHHHHHHHHHH-HHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhhhh
Q 038856 184 SCIMAFLINYYV-FLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYCKL 254 (257)
Q Consensus 184 ~~~~~~~~~~~~-~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~k~ 254 (257)
.++++...+|.. ++++++.+|.+.+.+.+++|++++++|++++|| ++++.+++|.++++.|+++..+.++
T Consensus 220 l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE-~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 220 LAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDE-RLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHHHHHHHhcchh
Confidence 999999999987 788999999999999999999999999999996 9999999999999999998776654
No 11
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.94 E-value=4e-24 Score=183.66 Aligned_cols=212 Identities=17% Similarity=0.180 Sum_probs=161.2
Q ss_pred HHhHHHHHHHHHHHHhhhhhc----cccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhcccccc-
Q 038856 30 HTLPLALSYLLYMLITMEAVR----GINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGARDLS- 104 (257)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~al~----~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~~~~~- 104 (257)
..+..++.+..++.+.+.+++ ++++..+.++.++.|+++.+++++++|||++++++.+++++++|++++..++.+
T Consensus 63 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~ 142 (295)
T PRK11689 63 YLLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGL 142 (295)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccc
Confidence 334444556667777777765 467788899999999999999999999999999999999999999887654321
Q ss_pred ----------cchhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCc
Q 038856 105 ----------FDAYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFY 174 (257)
Q Consensus 105 ----------~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 174 (257)
.+..|+.+++.+++++|.|++..||..++ .++..... ..+...+.+.....++. ....+
T Consensus 143 ~~~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~--~~~~~~~~---~~~~~~l~~~~~~~~~~------~~~~~ 211 (295)
T PRK11689 143 SLAELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARG--KNGITLFF---ILTALALWIKYFLSPQP------AMVFS 211 (295)
T ss_pred hhhhhhhccccChHHHHHHHHHHHHHHHHHHHHhhccCC--CCchhHHH---HHHHHHHHHHHHHhcCc------cccCC
Confidence 23469999999999999999999998763 45554322 22233333322322221 11234
Q ss_pred hhHHHHHHHHHHHHHHHHHHH-HHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhhh
Q 038856 175 PGFQVVMLLSCIMAFLINYYV-FLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYCK 253 (257)
Q Consensus 175 ~~~~~~l~~~~~~~~~~~~~~-~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~k 253 (257)
...|..+++.++ +....|.. ++++|+.+|.+.+...+++|++++++|++++|| ++++.+++|.++++.|+++....+
T Consensus 212 ~~~~~~l~~~~~-~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE-~~~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 212 LPAIIKLLLAAA-AMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLST-PLSFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHHhHHHHhhhH
Confidence 555666777775 45555655 899999999999999999999999999999996 999999999999999997776554
Q ss_pred h
Q 038856 254 L 254 (257)
Q Consensus 254 ~ 254 (257)
+
T Consensus 290 ~ 290 (295)
T PRK11689 290 R 290 (295)
T ss_pred h
Confidence 3
No 12
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.92 E-value=6.3e-23 Score=176.03 Aligned_cols=218 Identities=13% Similarity=0.077 Sum_probs=174.2
Q ss_pred CcChhHHHHHhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhccc
Q 038856 22 LVPLKTLVHTLPLALSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGAR 101 (257)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~~ 101 (257)
+.++|+++..+..|+++...+.+.+++++++|++.+.++.++.|+++++++ +||+++ ..++.++++|+.++..+
T Consensus 65 ~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~--~~~~~i~~~Gv~li~~~ 138 (293)
T PRK10532 65 RFAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVD--FVWVVLAVLGLWFLLPL 138 (293)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHH--HHHHHHHHHHHheeeec
Confidence 346778888888888888888899999999999999999999999999876 355544 44567778998876432
Q ss_pred --c-cccchhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchhHH
Q 038856 102 --D-LSFDAYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFYPGFQ 178 (257)
Q Consensus 102 --~-~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (257)
+ .+.+..|+.+++.+++++|.|.+..||..++ .++... .++...+...+.|.....++ ....+...|
T Consensus 139 ~~~~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~--~~~~~~-~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~ 208 (293)
T PRK10532 139 GQDVSHVDLTGAALALGAGACWAIYILSGQRAGAE--HGPATV-AIGSLIAALIFVPIGALQAG-------EALWHWSIL 208 (293)
T ss_pred CCCcccCChHHHHHHHHHHHHHHHHHHHHHHHhcc--CCchHH-HHHHHHHHHHHHHHHHHccC-------cccCCHHHH
Confidence 2 2345679999999999999999999998763 455554 45566666666666554321 111344456
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhhhhcC
Q 038856 179 VVMLLSCIMAFLINYYV-FLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYCKLQG 256 (257)
Q Consensus 179 ~~l~~~~~~~~~~~~~~-~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~k~~~ 256 (257)
..+++.++++...+|.. ++++++.+|.+++.+.+++|++++++|++++|| ++++.+++|.++++.|++.+.+.++||
T Consensus 209 ~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE-~~~~~~~iG~~lIl~~~~~~~~~~~~~ 286 (293)
T PRK10532 209 PLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGE-TLTLIQWLALGAIIAASMGSTLTIRRE 286 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 66778999999888876 899999999999999999999999999999996 999999999999999999998776654
No 13
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.92 E-value=1e-24 Score=172.16 Aligned_cols=230 Identities=21% Similarity=0.334 Sum_probs=206.1
Q ss_pred ChhHHHHHhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhccccc
Q 038856 24 PLKTLVHTLPLALSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGARDL 103 (257)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~~~~ 103 (257)
+.++.|+|+|.+++...+++....++||.+++.+++.|+++.+.++..+.+++|+|.+..+..+..++++..++..++|.
T Consensus 64 R~t~aK~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~ 143 (309)
T COG5070 64 RLTKAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQ 143 (309)
T ss_pred ehhhhhhhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchh
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999889887
Q ss_pred ccc-------hhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchh
Q 038856 104 SFD-------AYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFYPG 176 (257)
Q Consensus 104 ~~~-------~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 176 (257)
|.. ..|+.|+...++..+++.+..|+..+-.+...++.++|+++.+.|+++.+++..||++.. +.....+..
T Consensus 144 q~~~~~~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~-n~annl~~d 222 (309)
T COG5070 144 QASAFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPG-NLANNLSVD 222 (309)
T ss_pred hHHHHHhcccCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcc-hhhcCCChH
Confidence 421 269999999999999999999987765566778899999999999999999999987643 222223445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhhhhc
Q 038856 177 FQVVMLLSCIMAFLINYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYCKLQ 255 (257)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~k~~ 255 (257)
.+.++..+|++++...|+..|+++-+|++++|+++.+++....+.|.++||| |.+.+.+..+.+-..+..+|++.|.+
T Consensus 223 ~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffda-p~nf~si~sillGflsg~iYavaks~ 300 (309)
T COG5070 223 SLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDA-PVNFLSIFSILLGFLSGAIYAVAKSK 300 (309)
T ss_pred HHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCC-chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778999999999999999999999999999999999999999999999985 99999999999999999999988754
No 14
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.92 E-value=1.1e-22 Score=174.84 Aligned_cols=215 Identities=9% Similarity=-0.029 Sum_probs=157.4
Q ss_pred hhHHHHHhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhcccccc
Q 038856 25 LKTLVHTLPLALSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGARDLS 104 (257)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~~~~~ 104 (257)
++++......++....++.++++|++++|+++++++.++.|+++++++++++|||++++++.+++++++|++++..++.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~ 149 (296)
T PRK15430 70 PQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGS 149 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33333333444556788999999999999999999999999999999999999999999999999999999987544322
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCch-hHHHHHHH
Q 038856 105 FDAYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFYP-GFQVVMLL 183 (257)
Q Consensus 105 ~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ 183 (257)
. ..++++++++||.|.+..|+..++...+......++.+.+.+...+.. ++.. . ....++ ..+..+++
T Consensus 150 ~----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~-~~~~~~~~~~~~~~~ 218 (296)
T PRK15430 150 L----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA---DSST---S-HMGQNPMSLNLLLIA 218 (296)
T ss_pred c----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc---cCCc---c-cccCCcHHHHHHHHH
Confidence 2 256888999999999999886542222333344455555444332221 1110 0 001122 22344555
Q ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHh
Q 038856 184 SCIMAFLINYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAY 251 (257)
Q Consensus 184 ~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~ 251 (257)
.++.+....+..+.++|+.+|.+.+.+.+++|++++++|++++|| ++++.+++|++++++|+.+...
T Consensus 219 ~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E-~~~~~~~~G~~lI~~~~~v~~~ 285 (296)
T PRK15430 219 AGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGE-KPGADKMVTFAFIWVALAIFVM 285 (296)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 565444434444899999999999999999999999999999996 9999999999999888776653
No 15
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.91 E-value=7.1e-23 Score=176.14 Aligned_cols=226 Identities=15% Similarity=0.129 Sum_probs=182.7
Q ss_pred CcChhHHHHHhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhccc
Q 038856 22 LVPLKTLVHTLPLALSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGAR 101 (257)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~~ 101 (257)
+..++++++++..+++-...+++.+.|++|++++.++++.+++.+++++++++++|+|+++.++.|++++++|+.++...
T Consensus 73 ~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~s 152 (334)
T PF06027_consen 73 KVLKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVS 152 (334)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeee
Confidence 34456778899999999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred cc---------ccchhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCC
Q 038856 102 DL---------SFDAYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLL 172 (257)
Q Consensus 102 ~~---------~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~ 172 (257)
|. +....|+.+++.++++||.+++.+|+..+ +.+..+...+..+++.++..+...+.| ..+..+..
T Consensus 153 D~~~~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~--~~~~~~~lg~~Glfg~ii~~iq~~ile-~~~i~~~~-- 227 (334)
T PF06027_consen 153 DVLSGSDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVK--KAPRVEFLGMLGLFGFIISGIQLAILE-RSGIESIH-- 227 (334)
T ss_pred cccccccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcc--cCCHHHHHHHHHHHHHHHHHHHHHhee-hhhhhccC--
Confidence 43 12367999999999999999999999988 456777788888888888777665543 32222222
Q ss_pred CchhHHHHHHHHHHHHHHHHHHH-HHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHh
Q 038856 173 FYPGFQVVMLLSCIMAFLINYYV-FLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAY 251 (257)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~-~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~ 251 (257)
++...+..++.-++ +....|+. -..++..||+.+++......+.++++++++||+ ++++..++|.+++++|.++|+.
T Consensus 228 w~~~~~~~~v~~~~-~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~-~~~~ly~~af~lIiiG~vvy~~ 305 (334)
T PF06027_consen 228 WTSQVIGLLVGYAL-CLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGY-KFSWLYILAFALIIIGFVVYNL 305 (334)
T ss_pred CChhhHHHHHHHHH-HHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCc-cccHHHHHHHHHHHHHhheEEc
Confidence 34443333332222 23333443 567899999999998888899999999999996 9999999999999999999987
Q ss_pred hhh
Q 038856 252 CKL 254 (257)
Q Consensus 252 ~k~ 254 (257)
.+.
T Consensus 306 ~~~ 308 (334)
T PF06027_consen 306 AES 308 (334)
T ss_pred cCC
Confidence 543
No 16
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.89 E-value=7.2e-22 Score=168.55 Aligned_cols=217 Identities=17% Similarity=0.123 Sum_probs=160.2
Q ss_pred ChhHHHHHhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhccccc
Q 038856 24 PLKTLVHTLPLALSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGARDL 103 (257)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~~~~ 103 (257)
+++.+...+..++.......+.+.++++.+++.++.+.++.|+++.+++++++|||++++++.++.+++.|+.++..++.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~ 138 (281)
T TIGR03340 59 PATFWLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRF 138 (281)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 34444445555566788899999999999999999999999999999999999999999999999999999988765432
Q ss_pred -ccchhhHHHHHHHHHHHHHHHHHHHHhcccCC--CChhhHHHHHHHHH-HHHHHHHHHhcCchhhhhcCCCCCchhHHH
Q 038856 104 -SFDAYGYAVVFIANICTAAYLAFISRIGRSSG--LSSFGLMWCNGIIC-TPILLFWTSFRGDLEVTMNFPLLFYPGFQV 179 (257)
Q Consensus 104 -~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~--~~~~~~~~~~~l~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (257)
+.+..|+.+++.++++++.|.+..|+..++.+ .+......++.... .+.. +.....++. +...+...+.
T Consensus 139 ~~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~ 211 (281)
T TIGR03340 139 AQHRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFL-LLYLKRHGR------SMFPYARQIL 211 (281)
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHH-HHHHHHhcc------chhhhHHHHH
Confidence 34557888999999999999998887643221 11112222333222 2221 211111111 0001112234
Q ss_pred HHHHHHHHHHHHHHHH-HHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHH
Q 038856 180 VMLLSCIMAFLINYYV-FLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCF 248 (257)
Q Consensus 180 ~l~~~~~~~~~~~~~~-~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~ 248 (257)
.+++.+.+....+|.. ++++++.++.+.+...+++|++++++|++++|| ++++.+++|.+++++|+++
T Consensus 212 ~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE-~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 212 PSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNE-RWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCC-CccHHHHHHHHHHHHhHHh
Confidence 5556666666666655 889999999999999999999999999999996 9999999999999999875
No 17
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.87 E-value=1.1e-21 Score=161.72 Aligned_cols=233 Identities=19% Similarity=0.261 Sum_probs=199.0
Q ss_pred CCCCCcChhH-HHHHhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhh
Q 038856 18 NPTTLVPLKT-LVHTLPLALSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAF 96 (257)
Q Consensus 18 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~ 96 (257)
+.+.+.+|++ +++..|+|+..+..+.+.|++++|+|++.+++.|+..++|+.+++.++.-||++|.-.+.+.++-+|++
T Consensus 73 r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glf 152 (349)
T KOG1443|consen 73 RARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLF 152 (349)
T ss_pred ccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhee
Confidence 3345777776 688889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccchhhHHHHHHHHHHHHHHHHHHHHhcccCC---CChhhHHHHHHHHHHHHHHHHHHhcCchhhhh---cCC
Q 038856 97 LAGARDLSFDAYGYAVVFIANICTAAYLAFISRIGRSSG---LSSFGLMWCNGIICTPILLFWTSFRGDLEVTM---NFP 170 (257)
Q Consensus 97 ~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~---~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~---~~~ 170 (257)
+..+.+.|++..|..+..+++.+.++...++|.++++.+ .+|..+++...+.....++|..+..|.+.... .+.
T Consensus 153 lft~KsTqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~ 232 (349)
T KOG1443|consen 153 LFTYKSTQFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFR 232 (349)
T ss_pred EEEecccceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHH
Confidence 999999999999999999999999999999998886544 57888889888888888888877665433210 111
Q ss_pred CCCc---hhHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHH
Q 038856 171 LLFY---PGFQVVMLLSCIMAFLINYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSC 247 (257)
Q Consensus 171 ~~~~---~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~ 247 (257)
...+ ......+.+.|..++..-++.+..+.+++..+.|+.+..|.+.+.++|..+.+| .++..+|+|..++.+|+.
T Consensus 233 ~~d~~~~~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d-~ls~lN~~Gl~i~~agi~ 311 (349)
T KOG1443|consen 233 FQDTGLILRVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKD-QLSLLNWLGLAICLAGIL 311 (349)
T ss_pred hcCccHHHHHHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHHH
Confidence 1111 123345677777788888888999999999999999999999999999999996 999999999999999999
Q ss_pred HHHh
Q 038856 248 FYAY 251 (257)
Q Consensus 248 ~~~~ 251 (257)
.+.+
T Consensus 312 ~~~~ 315 (349)
T KOG1443|consen 312 LHRN 315 (349)
T ss_pred Hhcc
Confidence 9944
No 18
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.86 E-value=1.2e-21 Score=156.17 Aligned_cols=226 Identities=19% Similarity=0.143 Sum_probs=195.0
Q ss_pred CcChhHHHHHhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhccc
Q 038856 22 LVPLKTLVHTLPLALSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGAR 101 (257)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~~ 101 (257)
++++..-+.+..++..|.+.++..|.|+||.|.++..+.+++.|+.+++++.++.|++++|+++++++++++|+++..+.
T Consensus 79 ~~D~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK 158 (337)
T KOG1580|consen 79 EIDNTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYK 158 (337)
T ss_pred cccCCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcc
Confidence 34444457888999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred cc-------ccchhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCc
Q 038856 102 DL-------SFDAYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFY 174 (257)
Q Consensus 102 ~~-------~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 174 (257)
+- .--..|-.+.+++....+.....++|+...++.+..+++++.++.+.+.+-.-.+.+||......+. ...
T Consensus 159 ~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~-~Rh 237 (337)
T KOG1580|consen 159 ENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFV-QRH 237 (337)
T ss_pred ccccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHH-Hhc
Confidence 32 1224789999999999999999999888777788889999999999999888778888874432222 245
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHH
Q 038856 175 PGFQVVMLLSCIMAFLINYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFY 249 (257)
Q Consensus 175 ~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~ 249 (257)
|..|.-+.+.++.+...+.+.|..+...+|.+-|++...++.++++.|+++|++ +++..||+|..+++.|...=
T Consensus 238 P~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~n-pls~rQwlgtvlVF~aL~~D 311 (337)
T KOG1580|consen 238 PYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNN-PLSGRQWLGTVLVFSALTAD 311 (337)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcC-cCcHHHHHHHHHHHHHhhhH
Confidence 666777888888888888888999999999999999999999999999999995 99999999999999887643
No 19
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.86 E-value=4.8e-19 Score=150.85 Aligned_cols=214 Identities=19% Similarity=0.221 Sum_probs=169.5
Q ss_pred HHhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHH-HHhCcccCcchhHHHHHHHhhhhhhcccccccc--
Q 038856 30 HTLPLALSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEY-LLTGQKHSLPVVGSVGIILLGAFLAGARDLSFD-- 106 (257)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~-l~~~e~~~~~~~~~~~~~~~Gv~~~~~~~~~~~-- 106 (257)
..+..++.......+++.++++++++.++.+.++.|+++.++++ +++|||++++++.++.+.+.|+.++..++...+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~ 151 (292)
T COG0697 72 LLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGIL 151 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhH
Confidence 33444455688899999999999999999999999999999997 667999999999999999999999877665433
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHH-HHHHHHHHHHHHHHHhcCchhhhhcCCCCCchhHHHHHHHH
Q 038856 107 -AYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMW-CNGIICTPILLFWTSFRGDLEVTMNFPLLFYPGFQVVMLLS 184 (257)
Q Consensus 107 -~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~-~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 184 (257)
..|+.+++.+++++|.+.+..|+.. +.++..... ++.........+... .+. ....+...+..+.+.
T Consensus 152 ~~~g~~~~l~a~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~~~~~~~~~~ 220 (292)
T COG0697 152 SLLGLLLALAAALLWALYTALVKRLS---RLGPVTLALLLQLLLALLLLLLFFL--SGF------GAPILSRAWLLLLYL 220 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHHh--ccc------cccCCHHHHHHHHHH
Confidence 5899999999999999999999876 344544444 444322222222211 111 112344557778888
Q ss_pred HHHHHHHHHHH-HHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhhhhc
Q 038856 185 CIMAFLINYYV-FLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYCKLQ 255 (257)
Q Consensus 185 ~~~~~~~~~~~-~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~k~~ 255 (257)
++.+....+.. +.+.++.++...+...+.+|+.+++++++++|| +++..+++|..+++.|+.+...+|++
T Consensus 221 g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e-~~~~~~~~G~~li~~g~~l~~~~~~~ 291 (292)
T COG0697 221 GVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGE-PLSPAQLLGAALVVLGVLLASLRARR 291 (292)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHHHHHHHhccccc
Confidence 88877655554 889999999999999999999999999999996 99999999999999999999877443
No 20
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.84 E-value=2.8e-19 Score=147.75 Aligned_cols=229 Identities=17% Similarity=0.151 Sum_probs=200.6
Q ss_pred hhHHHHHhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhccc---
Q 038856 25 LKTLVHTLPLALSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGAR--- 101 (257)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~~--- 101 (257)
++.+.++...++.....-.++..|++|++-++..+.|++.-+.+++++.++.|+|+++.+++...++..|+.+....
T Consensus 80 ~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s 159 (327)
T KOG1581|consen 80 VAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNS 159 (327)
T ss_pred CCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCC
Confidence 44567888888888999999999999999999999999999999999999999999999999999999999876432
Q ss_pred cc------ccchhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCch
Q 038856 102 DL------SFDAYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFYP 175 (257)
Q Consensus 102 ~~------~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 175 (257)
|. ..++.|+.++..+.+..++.+..++++.++++.++++++++.++++.+.........+.+....++.. .++
T Consensus 160 ~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~-~hp 238 (327)
T KOG1581|consen 160 DSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIK-EHP 238 (327)
T ss_pred CCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHH-cCh
Confidence 21 23478999999999999999999999999999999999999999999888777666665554444443 466
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhhhhc
Q 038856 176 GFQVVMLLSCIMAFLINYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYCKLQ 255 (257)
Q Consensus 176 ~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~k~~ 255 (257)
+.+.-+++.+.++.+.|.+.+..+++.+|.+.+.+...+++++++++.++|| ++++..||.|..+++.|..+-.+.|.+
T Consensus 239 ~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~-h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 239 DVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFG-HPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred hHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhC-CccchhhccCeeeehHHHHHHHHHHHh
Confidence 7777788888888888999999999999999999999999999999999999 599999999999999999988777654
No 21
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.80 E-value=1.4e-17 Score=140.21 Aligned_cols=185 Identities=9% Similarity=-0.040 Sum_probs=134.5
Q ss_pred HHHHhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhcccccccch
Q 038856 28 LVHTLPLALSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGARDLSFDA 107 (257)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~~~~~~~~ 107 (257)
+......|++...++.+++.|++++++++++++.++.|+++++++++++|||++++++++++++++|++++..++.+.+
T Consensus 70 ~~~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~- 148 (256)
T TIGR00688 70 ILSLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP- 148 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch-
Confidence 3445667777888999999999999999999999999999999999999999999999999999999988754332222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchhHHHHHHHHHHH
Q 038856 108 YGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFYPGFQVVMLLSCIM 187 (257)
Q Consensus 108 ~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 187 (257)
.+++++++++|.|.+..|+..++ +..+... ..+...+...+.....+.. ..........|..+++.++.
T Consensus 149 ---~~~l~aa~~~a~~~i~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~g~~ 217 (256)
T TIGR00688 149 ---WEALVLAFSFTAYGLIRKALKNT---DLAGFCL-ETLSLMPVAIYYLLQTDFA----TVQQTNPFPIWLLLVLAGLI 217 (256)
T ss_pred ---HHHHHHHHHHHHHHHHHhhcCCC---CcchHHH-HHHHHHHHHHHHHHHhccC----cccccCchhHHHHHHHHHHH
Confidence 45788999999999999887542 2222222 1222222222222211111 00111112256677777776
Q ss_pred HHHHHHHH-HHHhhccchhHHHHHhHhHHHHHHHHHHHh
Q 038856 188 AFLINYYV-FLNTILNSALTQTICGNLKDLLTIGLGWLL 225 (257)
Q Consensus 188 ~~~~~~~~-~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~ 225 (257)
+ ...|.. +.++|+.+|.+.+...+++|++++++|.++
T Consensus 218 t-~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 218 T-GTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred H-HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 4 445555 899999999999999999999999999764
No 22
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.80 E-value=1e-17 Score=135.05 Aligned_cols=220 Identities=17% Similarity=0.140 Sum_probs=182.3
Q ss_pred CCCCCcChhHHHHHhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhh
Q 038856 18 NPTTLVPLKTLVHTLPLALSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFL 97 (257)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~ 97 (257)
..+++.++++++.....|+....+|.+++.+++.+|.+.+..+.++.|+.+++++. + +.++...+.+.+.|+.+
T Consensus 61 Pwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~s----R--r~~d~vwvaLAvlGi~l 134 (292)
T COG5006 61 PWRRRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALLSS----R--RLRDFVWVALAVLGIWL 134 (292)
T ss_pred HHHhccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHHHhc----c--chhhHHHHHHHHHHHHh
Confidence 34567888999999999999999999999999999999999999999998887643 2 34566677788888887
Q ss_pred hccc---ccccchhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCc
Q 038856 98 AGAR---DLSFDAYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFY 174 (257)
Q Consensus 98 ~~~~---~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 174 (257)
+.-. ..+.|+.|..+++.+..||+.|.+.-||..+ ..+..+-+...+..+.+...|+.....+ +...+
T Consensus 135 L~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~--~~~g~~g~a~gm~vAaviv~Pig~~~ag-------~~l~~ 205 (292)
T COG5006 135 LLPLGQSVWSLDPVGVALALGAGACWALYIVLGQRAGR--AEHGTAGVAVGMLVAALIVLPIGAAQAG-------PALFS 205 (292)
T ss_pred heeccCCcCcCCHHHHHHHHHHhHHHHHHHHHcchhcc--cCCCchHHHHHHHHHHHHHhhhhhhhcc-------hhhcC
Confidence 6432 3467899999999999999999999999875 4456667788888888888887653222 23345
Q ss_pred hhHHHHHHHHHHHHHHHHHHH-HHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhhh
Q 038856 175 PGFQVVMLLSCIMAFLINYYV-FLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYCK 253 (257)
Q Consensus 175 ~~~~~~l~~~~~~~~~~~~~~-~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~k 253 (257)
+..+..-+..++++..+-|+. ..++++.++.+++++..++|.++.+.|++++|| .+|+.||+|++.+++++.-.++.-
T Consensus 206 p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e-~ls~~qwlaI~~ViaAsaG~~lt~ 284 (292)
T COG5006 206 PSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGE-TLTLIQWLAIAAVIAASAGSTLTA 284 (292)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhcccccc
Confidence 665666677888889999998 899999999999999999999999999999996 999999999999999887555443
No 23
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.79 E-value=2.4e-17 Score=137.18 Aligned_cols=212 Identities=17% Similarity=0.136 Sum_probs=168.3
Q ss_pred ChhHHHHHhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhccccc
Q 038856 24 PLKTLVHTLPLALSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGARDL 103 (257)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~~~~ 103 (257)
++|+..++...+++|...+.+.+.++++++++++++++.+..+++++++++++|||++++||.++.+.++|+.+...++.
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~ 92 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS 92 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence 35677788889999999999999999999999999999999999999999999999999999999999999998733211
Q ss_pred -----------------ccchhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhh
Q 038856 104 -----------------SFDAYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVT 166 (257)
Q Consensus 104 -----------------~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ 166 (257)
+....|....++++++.++..++.+|+.|+.+.+.+......+..+.++.++.....+ .+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~-~~~~ 171 (244)
T PF04142_consen 93 QSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSD-GSAI 171 (244)
T ss_pred cccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhccc-cccc
Confidence 1124799999999999999999999999887766666666666666666655544332 2211
Q ss_pred h--cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHH
Q 038856 167 M--NFPLLFYPGFQVVMLLSCIMAFLINYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQAL 241 (257)
Q Consensus 167 ~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~l 241 (257)
. .+...++...|..+....+.|... ...+|+.+...-+....+..+.+.+.++++||. ++|....+|..+
T Consensus 172 ~~~g~f~G~~~~~~~~i~~~a~gGllv----a~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~-~~s~~f~lg~~~ 243 (244)
T PF04142_consen 172 SESGFFHGYSWWVWIVIFLQAIGGLLV----AFVLKYADNIVKGFATAVSIVLTAVLSVLLFGF-PPSLSFLLGAAL 243 (244)
T ss_pred ccCCchhhcchHHHHHHHHHHHhhHHH----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCC-CCchHHhhheec
Confidence 1 122224555566566666555544 357899999999999999999999999999985 999999999765
No 24
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.79 E-value=2.2e-18 Score=140.15 Aligned_cols=227 Identities=18% Similarity=0.129 Sum_probs=197.5
Q ss_pred HHHHhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhccccc----
Q 038856 28 LVHTLPLALSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGARDL---- 103 (257)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~~~~---- 103 (257)
||.+..++.+..+.+.+.|-++.|++.++..+.|++..+.+++.+.++-++|+.+.++.+..++.+|.......|.
T Consensus 106 ~rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sP 185 (367)
T KOG1582|consen 106 WRTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSP 185 (367)
T ss_pred hhHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCC
Confidence 3667788888889999999999999999999999999999999999999999999999999999999998876664
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchhHHHHHHH
Q 038856 104 SFDAYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFYPGFQVVMLL 183 (257)
Q Consensus 104 ~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 183 (257)
++|..|..+.-++..+.|+-...++|.++..+.++.++.+|..-++.+++...+..+||....+.+...++.+.....++
T Consensus 186 NF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~ 265 (367)
T KOG1582|consen 186 NFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFL 265 (367)
T ss_pred CcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHH
Confidence 67789999999999999999999999888878888999999999999999988888999887777766555544444455
Q ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhhhhc
Q 038856 184 SCIMAFLINYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYCKLQ 255 (257)
Q Consensus 184 ~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~k~~ 255 (257)
-...++..+.+....++..++..+..+.+.++-.++++|+++|. +|+|.+..-|..+++.|+++-.+.|+.
T Consensus 266 ~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFs-KPfT~qy~~~gllv~lgI~Ln~ysk~n 336 (367)
T KOG1582|consen 266 FSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFS-KPFTEQYVWSGLLVVLGIYLNMYSKRN 336 (367)
T ss_pred HHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHc-CchHHHHhhhhHHHHHHHHhhcccCCC
Confidence 55555555455556788899999999999999999999999998 599999999999999999998888743
No 25
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.77 E-value=8.8e-18 Score=130.43 Aligned_cols=142 Identities=28% Similarity=0.466 Sum_probs=125.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccc-----CCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCC---C-C--CchhH
Q 038856 109 GYAVVFIANICTAAYLAFISRIGRS-----SGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFP---L-L--FYPGF 177 (257)
Q Consensus 109 G~~~~l~a~~~~a~~~v~~~~~~~~-----~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~---~-~--~~~~~ 177 (257)
|.++++.+.++.|+++++.|+..++ .+.|++++.+|+++.+.+.+.|.....|+........ . . .++..
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 7889999999999999999998877 6899999999999999999999988877665221111 0 1 14466
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHh
Q 038856 178 QVVMLLSCIMAFLINYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAY 251 (257)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~ 251 (257)
+..++..|+.++..+++.+.+++++||++.++.+.+|.+..++.|+++||| ++|+.++.|..+.+.|+++|+|
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~-~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGE-PITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCC-cCCHHHHHHHHHHHHHHheeeC
Confidence 888999999999999999999999999999999999999999999999996 9999999999999999999985
No 26
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.76 E-value=1.8e-17 Score=140.56 Aligned_cols=223 Identities=16% Similarity=0.132 Sum_probs=169.1
Q ss_pred HHHHhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhccccc----
Q 038856 28 LVHTLPLALSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGARDL---- 103 (257)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~~~~---- 103 (257)
.+--+....+....++++|.||.|++++-.+++.++.-.|+..++.++..||+++.+.+++.+.+.|++++..+|.
T Consensus 159 ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~ 238 (416)
T KOG2765|consen 159 AKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNS 238 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccc
Confidence 3333444455677888899999999999999999999999999999999999999999999999999999877643
Q ss_pred ----ccchhhHHHHHHHHHHHHHHHHHHHHhcccC--CCChhhHHHHHHHHHHHHHHHHHHhcCchh-hhhcCCCCCchh
Q 038856 104 ----SFDAYGYAVVFIANICTAAYLAFISRIGRSS--GLSSFGLMWCNGIICTPILLFWTSFRGDLE-VTMNFPLLFYPG 176 (257)
Q Consensus 104 ----~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~ 176 (257)
+....|..+++.+|+.||.|.+..||...++ +.|--....|-.++..+++.|...+.+... ...+.|. +..
T Consensus 239 ~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~--~~q 316 (416)
T KOG2765|consen 239 DLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPS--STQ 316 (416)
T ss_pred cCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCC--Cce
Confidence 2336899999999999999999999977654 455544455666777777765544322110 0122332 222
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhhhh
Q 038856 177 FQVVMLLSCIMAFL-INYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYCKL 254 (257)
Q Consensus 177 ~~~~l~~~~~~~~~-~~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~k~ 254 (257)
...++..+.++.+ --|...++.-.++|+..++...+....+++....+=| .++++.+++|.+.+++|.+..++..+
T Consensus 317 -~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~-~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 317 -FSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKG-KHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred -eEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHhheecccc
Confidence 2234444444444 4566678899999999999888888888888777766 59999999999999999998886653
No 27
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.75 E-value=3e-16 Score=134.41 Aligned_cols=210 Identities=14% Similarity=0.160 Sum_probs=161.2
Q ss_pred HHHHHhHHHHHHHHHHHHhhhhhccccchHHHHHHH-HHHHHHHHHHHHHhCcccCcch----hHHHHHHHhhhhhhccc
Q 038856 27 TLVHTLPLALSYLLYMLITMEAVRGINVPMYTTLRR-TTVAFTMIVEYLLTGQKHSLPV----VGSVGIILLGAFLAGAR 101 (257)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~-~~pv~~~i~~~l~~~e~~~~~~----~~~~~~~~~Gv~~~~~~ 101 (257)
.+..-+..|+++...+.+++.|.++++++.+..+.+ +.+++..+++.+++|||.++++ +.++++.++|+++....
T Consensus 58 ~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~ 137 (290)
T TIGR00776 58 IFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS 137 (290)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence 334445555667888899999999999999999988 8889999999999999999999 99999999999887543
Q ss_pred ccc-------cc-hhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHH---H-HHHHHHHHHHhcCchhhhhcC
Q 038856 102 DLS-------FD-AYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGI---I-CTPILLFWTSFRGDLEVTMNF 169 (257)
Q Consensus 102 ~~~-------~~-~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l---~-~~~~l~~~~~~~~~~~~~~~~ 169 (257)
+.+ .+ ..|..++++++++|+.|.+..|+. +.|+++..+.+.. . +.++..+. . + ..
T Consensus 138 ~~~~~~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~-~---~-----~~ 204 (290)
T TIGR00776 138 KDKSAGIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF----GVDGLSVLLPQAIGMVIGGIIFNLGH-I---L-----AK 204 (290)
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHHHc----CCCcceehhHHHHHHHHHHHHHHHHH-h---c-----cc
Confidence 221 33 689999999999999999999875 2577777544443 3 33333222 1 0 00
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHH-HHHhh-ccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhh----hHHHHHH
Q 038856 170 PLLFYPGFQVVMLLSCIMAFLINYYV-FLNTI-LNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNI----VGQALGF 243 (257)
Q Consensus 170 ~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~i~-~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~----~G~~li~ 243 (257)
+ ...+.+......|++ ...++.. +...+ +.++.+.+++.+++|+.+++.+++++|| +.++.|+ +|.++++
T Consensus 205 ~--~~~~~~~~~~~~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E-~~~~~~~~~~~iG~~lIi 280 (290)
T TIGR00776 205 P--LKKYAILLNILPGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGE-KKTKREMIAISVGIILII 280 (290)
T ss_pred c--hHHHHHHHHHHHHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhcc-CCCcceeehhHHHHHHHH
Confidence 1 122223333447777 4556655 57788 8999999999999999999999999996 9999999 9999999
Q ss_pred HHHHHHHhhh
Q 038856 244 LGSCFYAYCK 253 (257)
Q Consensus 244 ~g~~~~~~~k 253 (257)
.|+.+....|
T Consensus 281 ~~~~l~~~~~ 290 (290)
T TIGR00776 281 IAANILGIGK 290 (290)
T ss_pred HHHHHHhccC
Confidence 9998876543
No 28
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.74 E-value=6.3e-19 Score=143.03 Aligned_cols=218 Identities=13% Similarity=0.113 Sum_probs=175.0
Q ss_pred HHHhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhccc-----c-
Q 038856 29 VHTLPLALSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGAR-----D- 102 (257)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~~-----~- 102 (257)
+.++..|++........++|++|++.+++.++...+|+++.+++|.++||++++.+.++..+.+.|+++..-+ |
T Consensus 98 ~~LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~ 177 (346)
T KOG4510|consen 98 KWLILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDT 177 (346)
T ss_pred EEEEeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCC
Confidence 3445568888888888899999999999999999999999999999999999999999999999999986332 1
Q ss_pred -----c---ccchhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCc
Q 038856 103 -----L---SFDAYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFY 174 (257)
Q Consensus 103 -----~---~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 174 (257)
. +.+..|-..++.+++..|--.+..|++.+ +.+....+.|.++++.+...+.....+++ ..| +.
T Consensus 178 t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk--~~h~~msvsyf~~i~lV~s~I~~~~ig~~----~lP--~c 249 (346)
T KOG4510|consen 178 TEGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGK--NAHAIMSVSYFSLITLVVSLIGCASIGAV----QLP--HC 249 (346)
T ss_pred ccccccccccccCCchHHHHHhHhhhhhHHHHHHHhhc--cccEEEEehHHHHHHHHHHHHHHhhccce----ecC--cc
Confidence 1 12346888888888888877788899887 45555555666666666655544333432 334 34
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhhhh
Q 038856 175 PGFQVVMLLSCIMAFLINYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYCKL 254 (257)
Q Consensus 175 ~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~k~ 254 (257)
...|..++..|++++..|.....++++..+...++..+.+-+++.++.+++||| .+|+.+|.|+++++.+.++...+|.
T Consensus 250 gkdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~-~Pt~ws~~Ga~~vvsS~v~~a~~kw 328 (346)
T KOG4510|consen 250 GKDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGH-WPTIWSWVGAVMVVSSTVWVALKKW 328 (346)
T ss_pred ccceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcC-CChHHHhhceeeeehhHHHHHHHHH
Confidence 445677888899999999888888888888888899999999999999999995 9999999999999999988887764
Q ss_pred c
Q 038856 255 Q 255 (257)
Q Consensus 255 ~ 255 (257)
.
T Consensus 329 a 329 (346)
T KOG4510|consen 329 A 329 (346)
T ss_pred h
Confidence 3
No 29
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.74 E-value=1.1e-15 Score=129.68 Aligned_cols=225 Identities=16% Similarity=0.154 Sum_probs=179.2
Q ss_pred hhHHHHHhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhcccc--
Q 038856 25 LKTLVHTLPLALSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGARD-- 102 (257)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~~~-- 102 (257)
+++..++...+.+|+..+.+.+.++.+.+++++++...+....|+++..++++||.+++||.++++.+.|+.++..+.
T Consensus 89 ~~~~lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~ 168 (345)
T KOG2234|consen 89 PRETLKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLS 168 (345)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCC
Confidence 446677788888999988899999999999999999999999999999999999999999999999999999985221
Q ss_pred ---------cccchhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhh--hcCCC
Q 038856 103 ---------LSFDAYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVT--MNFPL 171 (257)
Q Consensus 103 ---------~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~--~~~~~ 171 (257)
.+..+.|....+.++++.++-.++.+|++++.+.+.|-.....+.++.++........ |.+.. ..+-.
T Consensus 169 ~~~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~-d~~~i~~~gff~ 247 (345)
T KOG2234|consen 169 PTGAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQ-DGEAINEYGFFY 247 (345)
T ss_pred CCCccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhc-cccccccCCccc
Confidence 1223679999999999999999999999987776666555555555555554443333 33322 22333
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHh
Q 038856 172 LFYPGFQVVMLLSCIMAFLINYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAY 251 (257)
Q Consensus 172 ~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~ 251 (257)
-++...|..++..++.|...+ ..+|+.+-..-.....+..+++.+.++.+|| .++|..-.+|..+++.++.+|+.
T Consensus 248 G~s~~vw~vVl~~a~gGLlvs----~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~-~~~t~~F~lG~~lVi~Si~lY~~ 322 (345)
T KOG2234|consen 248 GYSSIVWLVVLLNAVGGLLVS----LVMKYADNILKGFSTSVAIILTTVASIALFD-FQLTLYFLLGALLVILSIFLYSL 322 (345)
T ss_pred cccHHHHHHHHHHhccchhHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHcc-CCchHHHHHHHHHHHHHHHHhhc
Confidence 366667888888888777665 4567777777777777888999999999997 69999999999999999999996
Q ss_pred hhhc
Q 038856 252 CKLQ 255 (257)
Q Consensus 252 ~k~~ 255 (257)
.+.+
T Consensus 323 ~P~~ 326 (345)
T KOG2234|consen 323 YPAR 326 (345)
T ss_pred CCcc
Confidence 6554
No 30
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.73 E-value=3.2e-15 Score=123.63 Aligned_cols=216 Identities=16% Similarity=0.085 Sum_probs=172.3
Q ss_pred hHHHHHhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhccccccc
Q 038856 26 KTLVHTLPLALSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGARDLSF 105 (257)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~~~~~~ 105 (257)
|.+......+.+...++..+.+|...-.+-++++..+..|++..+++.+++|||+++.|+.++.++.+||....+...+.
T Consensus 70 ~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~l 149 (293)
T COG2962 70 KTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSL 149 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 44556667778888999999999999999999999999999999999999999999999999999999999988877787
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchhHHHHHHHHH
Q 038856 106 DAYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFYPGFQVVMLLSC 185 (257)
Q Consensus 106 ~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 185 (257)
++.. +.=++.+++|... ||.. +.|+.+-.....+.-.|..+.+....++..+ +....+...+..++.+|
T Consensus 150 pwva----l~la~sf~~Ygl~-RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~---~~~~~~~~~~~LLv~aG 218 (293)
T COG2962 150 PWVA----LALALSFGLYGLL-RKKL---KVDALTGLTLETLLLLPVALIYLLFLADSGQ---FLQQNANSLWLLLVLAG 218 (293)
T ss_pred cHHH----HHHHHHHHHHHHH-HHhc---CCchHHhHHHHHHHHhHHHHHHHHHHhcCch---hhhcCCchHHHHHHHhh
Confidence 7544 4446788888876 5433 4677777777776666666666555444322 11113444566777777
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhhh
Q 038856 186 IMAFLINYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYCK 253 (257)
Q Consensus 186 ~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~k 253 (257)
..+..--.....+-|+.+-.+.++++|++|....+++++++|| +++..+....+.+..|..+|+...
T Consensus 219 ~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E-~~~~~~~~~F~~IW~aL~l~~~d~ 285 (293)
T COG2962 219 LVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGE-PFDSDQLVTFAFIWLALALFSIDG 285 (293)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7755533333578899999999999999999999999999996 999999999999999999998653
No 31
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.71 E-value=1.5e-17 Score=135.61 Aligned_cols=231 Identities=21% Similarity=0.328 Sum_probs=178.5
Q ss_pred CCcChhHHHHHhHHHHHHHHHHHHhhhhhcc-ccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhc
Q 038856 21 TLVPLKTLVHTLPLALSYLLYMLITMEAVRG-INVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAG 99 (257)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~ 99 (257)
+++|+ |.+...-.+|...+.++|.++++ +|++.+.++|+..++.+|+++++++|+|++.+|+.++++..+|+++..
T Consensus 60 ~kipl---k~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcT 136 (330)
T KOG1583|consen 60 PKIPL---KDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICT 136 (330)
T ss_pred CCCch---hhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEE
Confidence 34454 55666777888999999999996 999999999999999999999999999999999999999999998863
Q ss_pred c---cccc------------cc----hhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHH-h
Q 038856 100 A---RDLS------------FD----AYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTS-F 159 (257)
Q Consensus 100 ~---~~~~------------~~----~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~-~ 159 (257)
. .|.. .+ ..|..+..++.+..|.-.++++...|+++-++-+.++|..+.+.|.++...- +
T Consensus 137 l~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~di 216 (330)
T KOG1583|consen 137 LFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDI 216 (330)
T ss_pred eecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchH
Confidence 2 1211 11 3599999999999999999999999998889999999999999887765421 1
Q ss_pred cCchhhhhc-----CCCC--CchhHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcc
Q 038856 160 RGDLEVTMN-----FPLL--FYPGFQVVMLLSCIMAFLINYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFD 232 (257)
Q Consensus 160 ~~~~~~~~~-----~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t 232 (257)
..++..... .+.. .-|.-|..++..++.-....-..+..-.+++++++++.-++++.++.++|++.|++ ++|
T Consensus 217 v~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~N-pft 295 (330)
T KOG1583|consen 217 VSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFEN-PFT 295 (330)
T ss_pred HHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecC-CCC
Confidence 111111111 1111 13444666666665533322222445567899999999999999999999999975 999
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhc
Q 038856 233 LFNIVGQALGFLGSCFYAYCKLQ 255 (257)
Q Consensus 233 ~~~~~G~~li~~g~~~~~~~k~~ 255 (257)
+..|+|.++++.|.++|+...++
T Consensus 296 ~~h~lGa~lVF~Gt~~fa~~~~~ 318 (330)
T KOG1583|consen 296 PWHWLGAALVFFGTLLFANVWNH 318 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999866543
No 32
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.62 E-value=1.8e-14 Score=117.98 Aligned_cols=220 Identities=17% Similarity=0.165 Sum_probs=170.9
Q ss_pred HHhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhccccc------
Q 038856 30 HTLPLALSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGARDL------ 103 (257)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~~~~------ 103 (257)
..++.+++-.....+-+.++.+++++.+|+++....+|+.+++.-+++++++.++|+++....+|++.+...|.
T Consensus 88 lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p 167 (372)
T KOG3912|consen 88 LFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDP 167 (372)
T ss_pred eecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCC
Confidence 44566777767777778899999999999999999999999999999999999999999999999999865543
Q ss_pred ----ccchhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHh-----cCchhh-h----hc-
Q 038856 104 ----SFDAYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSF-----RGDLEV-T----MN- 168 (257)
Q Consensus 104 ----~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~-----~~~~~~-~----~~- 168 (257)
+.-..|+.+.+.+-+.-|...+..+|..++.+.+|.+...|+.+++..++-..+.. .++... . ++
T Consensus 168 ~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD 247 (372)
T KOG3912|consen 168 YTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLED 247 (372)
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhh
Confidence 22256999999999999999999999999999999999999998885554333221 111100 0 00
Q ss_pred ----CCC-CCchhHHHHHHHHHHHH--HHHHHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHH
Q 038856 169 ----FPL-LFYPGFQVVMLLSCIMA--FLINYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQAL 241 (257)
Q Consensus 169 ----~~~-~~~~~~~~~l~~~~~~~--~~~~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~l 241 (257)
+.. ..++ .+.+...+... ..+|+......|..|+++-.++-.++.....+++.....| .+...|+.|..+
T Consensus 248 ~~~~~~~~~e~p--~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E-~f~llqilGFli 324 (372)
T KOG3912|consen 248 WGDAFAALQESP--SLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWE-YFHLLQILGFLI 324 (372)
T ss_pred HHHHHHHhcCCc--hhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHH-HHHHHHHHHHHH
Confidence 000 0111 12333333332 2346666677888999999999999999999999999996 999999999999
Q ss_pred HHHHHHHHHhh
Q 038856 242 GFLGSCFYAYC 252 (257)
Q Consensus 242 i~~g~~~~~~~ 252 (257)
.+.|.++|+-.
T Consensus 325 Li~Gi~lY~~i 335 (372)
T KOG3912|consen 325 LIMGIILYNQI 335 (372)
T ss_pred HHHHHHHHHHH
Confidence 99999999843
No 33
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.47 E-value=6.8e-13 Score=109.39 Aligned_cols=192 Identities=15% Similarity=0.142 Sum_probs=130.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhccccc---------------------------c
Q 038856 52 INVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGARDL---------------------------S 104 (257)
Q Consensus 52 ~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~~~~---------------------------~ 104 (257)
+++|.....++..++++++.++...+||++..++++.++...|++.....|. .
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g 81 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG 81 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence 5788899999999999999999999999999999999999999875322211 1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCC--CCCchhHHHHHH
Q 038856 105 FDAYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFP--LLFYPGFQVVML 182 (257)
Q Consensus 105 ~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ 182 (257)
..+.|....+.+.++.++..+++++..++++.+.+.......+++.+........ .+.+...+.+ ..++...|..++
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 160 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLW-SDGTLISNFGFFIGYPTAVWIVGL 160 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhh-cccchhhccCcccCCchHHHHHHH
Confidence 2245677777788888888999888776544332222222222333221111111 1111111111 112232333332
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHH
Q 038856 183 LSCIMAFLINYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFY 249 (257)
Q Consensus 183 ~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~ 249 (257)
... ..+.+..+++|+.++...++....+++.+.++++++||| ++++.++.|..+++.|+.+|
T Consensus 161 ~~a----~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~-~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 161 LNV----GGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDA-KISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHH----hcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHeeeEeC
Confidence 222 223445788999999999999999999999999999995 99999999999999987664
No 34
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.30 E-value=3.2e-11 Score=89.72 Aligned_cols=124 Identities=20% Similarity=0.266 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchhHHHHHHHHHHHHHHHHHH-HH
Q 038856 118 ICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFYPGFQVVMLLSCIMAFLINYY-VF 196 (257)
Q Consensus 118 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~ 196 (257)
+++|.+.+..|+..+ +.|+.+..++....+.+ +.+.....+..+ ....+...+....+.++++...++. .+
T Consensus 1 ~~~a~~~~~~k~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLK--KISPLSITFWRFLIAGI-LLILLLILGRKP-----FKNLSPRQWLWLLFLGLLGTALAYLLYF 72 (126)
T ss_pred ceeeeHHHHHHHHhc--cCCHHHHHHHHHHHHHH-HHHHHHhhcccc-----ccCCChhhhhhhhHhhccceehHHHHHH
Confidence 467889999999888 47899999999998887 555555443321 1223444456666777775454454 48
Q ss_pred HHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHH
Q 038856 197 LNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYA 250 (257)
Q Consensus 197 ~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~ 250 (257)
.++++.++...+.+.+++|+.+.+++++++|| ++++.+++|.++++.|+++..
T Consensus 73 ~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e-~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 73 YALKYISASIVSILQYLSPVFAAILGWLFLGE-RPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999996 999999999999999998764
No 35
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.29 E-value=7.1e-12 Score=98.07 Aligned_cols=228 Identities=11% Similarity=0.092 Sum_probs=164.2
Q ss_pred CCCcChhH-HHHHhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhh
Q 038856 20 TTLVPLKT-LVHTLPLALSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLA 98 (257)
Q Consensus 20 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~ 98 (257)
.+.++.|. .++..|.+++..+.++.+..|++.++++.++.+..+.-.|+.+++++.+|+|+...++++..+.+.|+++.
T Consensus 44 ~kG~nik~~~~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmi 123 (290)
T KOG4314|consen 44 DKGFNIKLFFIRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMI 123 (290)
T ss_pred ccCceeeeeeeeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEE
Confidence 34455443 35667788888999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccc--ccchhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHH-----HHHHHHHHHHhcCchhhhhcCCC
Q 038856 99 GARDL--SFDAYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGII-----CTPILLFWTSFRGDLEVTMNFPL 171 (257)
Q Consensus 99 ~~~~~--~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~-----~~~~l~~~~~~~~~~~~~~~~~~ 171 (257)
.+.|- ..++.|...++++++..|.|.+..|+...+.+.... ..+.+-. +..-..+..+.....++...+..
T Consensus 124 ay~DN~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gda--a~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~ 201 (290)
T KOG4314|consen 124 AYADNEHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDA--AHFMSCLGFFNLCFISFPALILAFTGVEHLQSFAA 201 (290)
T ss_pred EeccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhH--HHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHhh
Confidence 76543 456899999999999999999999998875444332 2222211 22222333333332222221211
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHh
Q 038856 172 LFYPGFQVVMLLSCIMAFLINYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAY 251 (257)
Q Consensus 172 ~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~ 251 (257)
.-|..+.........+++..+..+....|...|+-......-..... ++++|..++.....|..+++.|.++...
T Consensus 202 ----~PWG~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiD-iL~q~l~~ntl~La~T~iI~i~FiLiii 276 (290)
T KOG4314|consen 202 ----APWGCLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAID-ILFQELEFNTLFLAATCIICIGFILIII 276 (290)
T ss_pred ----CCchhhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHH-HHHHHHHHHHHHHHHHHHHHHhHHheec
Confidence 11555666666666677777777888888888875444444445554 4455567899999999999999887665
Q ss_pred hhh
Q 038856 252 CKL 254 (257)
Q Consensus 252 ~k~ 254 (257)
...
T Consensus 277 P~d 279 (290)
T KOG4314|consen 277 PED 279 (290)
T ss_pred ccc
Confidence 443
No 36
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.27 E-value=1.8e-13 Score=110.84 Aligned_cols=202 Identities=14% Similarity=0.106 Sum_probs=153.7
Q ss_pred HHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhccccc--------ccchhhHHH
Q 038856 41 YMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGARDL--------SFDAYGYAV 112 (257)
Q Consensus 41 ~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~~~~--------~~~~~G~~~ 112 (257)
.+++-..|.||++....+++.+-..+-+++++|+++|.|+.+.++.++.+++.|++.+...|. +....|+.+
T Consensus 91 aNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~l 170 (336)
T KOG2766|consen 91 ANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFL 170 (336)
T ss_pred ccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEE
Confidence 344445789999999999999999999999999999999999999999999999998765543 223479999
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchhHHHHHHHHHHHHHHHH
Q 038856 113 VFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFYPGFQVVMLLSCIMAFLIN 192 (257)
Q Consensus 113 ~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 192 (257)
.++++-+||..++..+.+.+ +.|-.+++....+++.++.++- .+.+... . ....++.. ....+...++...-
T Consensus 171 vi~GATlYaVSNv~EEflvk--n~d~~elm~~lgLfGaIIsaIQ-~i~~~~~-~--~tl~w~~~--i~~yl~f~L~MFll 242 (336)
T KOG2766|consen 171 VIAGATLYAVSNVSEEFLVK--NADRVELMGFLGLFGAIISAIQ-FIFERHH-V--STLHWDSA--IFLYLRFALTMFLL 242 (336)
T ss_pred EEecceeeeeccccHHHHHh--cCcHHHHHHHHHHHHHHHHHHH-Hhhhccc-e--eeEeehHH--HHHHHHHHHHHHHH
Confidence 99999999999999988888 6788888888888888877665 3333211 0 01112221 11222233333334
Q ss_pred HHH-HHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhhh
Q 038856 193 YYV-FLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYCK 253 (257)
Q Consensus 193 ~~~-~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~k 253 (257)
|+. -..+|..|++.+++.-......+++. ..|| -+++|...+..+.+..|.++|+-++
T Consensus 243 Ysl~pil~k~~~aT~~nlslLTsDmwsl~i--~~Fg-Yhv~wLY~laF~~i~~GliiYs~re 301 (336)
T KOG2766|consen 243 YSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFG-YHVDWLYFLAFATIATGLIIYSTRE 301 (336)
T ss_pred HHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHh-cchhhhhHHHHHHHHHhhEEeeccc
Confidence 544 45688899999988888888888887 6777 4899999999999999999996443
No 37
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.27 E-value=4.2e-11 Score=87.22 Aligned_cols=134 Identities=15% Similarity=0.074 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchhHHHHHHHHHHHHH
Q 038856 110 YAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFYPGFQVVMLLSCIMAF 189 (257)
Q Consensus 110 ~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 189 (257)
..+++.++++++...++.|--.+ +.||..-++.-++....++..+....+++. .+...++..|.+++++|+.+.
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~--~vdp~~At~IRtiVi~~~l~~v~~~~g~~~----~~~~~~~k~~lflilSGla~g 78 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLE--GVDPDFATTIRTIVILIFLLIVLLVTGNWQ----AGGEIGPKSWLFLILSGLAGG 78 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHHHHHHHHhcCcee----cccccCcceehhhhHHHHHHH
Confidence 57899999999999999887776 678877777778888888877777777653 333356777999999997766
Q ss_pred HHHHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHH
Q 038856 190 LINYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYA 250 (257)
Q Consensus 190 ~~~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~ 250 (257)
..-++-|.++|+-.+..+..+.-..+++++++|++++|| ++|..+|+|+.++.+|.++-+
T Consensus 79 lswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E-~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 79 LSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGE-RLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcC-CCCHHHHHHHHHHHhCeeeEe
Confidence 655666899999999999899999999999999999996 999999999999999987654
No 38
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.07 E-value=4.3e-08 Score=81.93 Aligned_cols=209 Identities=13% Similarity=0.129 Sum_probs=152.5
Q ss_pred hHHHHHhHHHHHHHHHHHHhhhhhccccchHHHHH-HHHHHHHHHHHHHHHhCcccCcchhH----HHHHHHhhhhhhcc
Q 038856 26 KTLVHTLPLALSYLLYMLITMEAVRGINVPMYTTL-RRTTVAFTMIVEYLLTGQKHSLPVVG----SVGIILLGAFLAGA 100 (257)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~-~~~~pv~~~i~~~l~~~e~~~~~~~~----~~~~~~~Gv~~~~~ 100 (257)
+.+..-+..|+++...+...+.|.+++.++.+.=+ ..++.+.+.+.+.++++|+.+..++. ++++.++|+.+...
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 66777788899999999999999999988865433 36778889999999999998887764 77788899988765
Q ss_pred cccc--------cchhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCC
Q 038856 101 RDLS--------FDAYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLL 172 (257)
Q Consensus 101 ~~~~--------~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~ 172 (257)
.|.+ ....|+...+++.+.|..|.+..|- .+.|+++..+=|++-..+....+.....+ ..
T Consensus 123 ~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~----~~~~~~~~~lPqaiGm~i~a~i~~~~~~~-----~~--- 190 (269)
T PF06800_consen 123 QDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKA----FHVSGWSAFLPQAIGMLIGAFIFNLFSKK-----PF--- 190 (269)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHHHHh----cCCChhHhHHHHHHHHHHHHHHHhhcccc-----cc---
Confidence 5431 1245999999999999999999765 25788888777765433333333332211 00
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchh----hhhHHHHHHHHHHH
Q 038856 173 FYPGFQVVMLLSCIMAFLINYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLF----NIVGQALGFLGSCF 248 (257)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~----~~~G~~li~~g~~~ 248 (257)
.+.. ...-+..|++-...+.+.+.+.++.+....=.+..+..+++.+.|++++|| +=+.. .++|.+++++|.++
T Consensus 191 ~~k~-~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E-~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 191 FEKK-SWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKE-KKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred cccc-hHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEe-cCchhhHHHHHHHHHHHHHhhhc
Confidence 0111 233456666666667777777888888887788889999999999999997 55644 55788888887654
No 39
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.04 E-value=1.7e-08 Score=86.85 Aligned_cols=143 Identities=12% Similarity=0.068 Sum_probs=106.6
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchhHHHHH
Q 038856 102 DLSFDAYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFYPGFQVVM 181 (257)
Q Consensus 102 ~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 181 (257)
|.+....|..+.+.++++++...+..|.. . +.++.++.++...++.+.+.+.....++....... ..+...+...
T Consensus 2 ~~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~--~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~ 76 (296)
T PRK15430 2 DAKQTRQGVLLALAAYFIWGIAPAYFKLI-Y--YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTL--IQTPQKIFML 76 (296)
T ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHHHh-c--CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH--HcCHHHHHHH
Confidence 34445679999999999999999999764 3 58899999999999888777765544332111000 0122223223
Q ss_pred HHHHHHHHHH-HHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHh
Q 038856 182 LLSCIMAFLI-NYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAY 251 (257)
Q Consensus 182 ~~~~~~~~~~-~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~ 251 (257)
. .+.++... ....+++++++++..+++..+..|++.++++++++|| +++..+++|.++.++|+.+...
T Consensus 77 ~-~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E-~~~~~~~~g~~l~~~Gv~li~~ 145 (296)
T PRK15430 77 A-VSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGE-RFRRMQWLAVILAICGVLVQLW 145 (296)
T ss_pred H-HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 3 33333443 4445899999999999999999999999999999996 9999999999999999987653
No 40
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.02 E-value=9.3e-10 Score=80.99 Aligned_cols=79 Identities=18% Similarity=0.180 Sum_probs=69.0
Q ss_pred hHHHHHhHHHHHHH-HHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhcccccc
Q 038856 26 KTLVHTLPLALSYL-LYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGARDLS 104 (257)
Q Consensus 26 ~~~~~~~~~~~~~~-~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~~~~~ 104 (257)
+++......|.+.. ..+.+++.|+++.+ +....+.++.|+++++++++++|||++++++.+++++++|++++..+|.+
T Consensus 32 ~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 32 KPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 44455556676654 88999999999999 68889999999999999999999999999999999999999999888765
Q ss_pred c
Q 038856 105 F 105 (257)
Q Consensus 105 ~ 105 (257)
.
T Consensus 111 ~ 111 (113)
T PF13536_consen 111 G 111 (113)
T ss_pred c
Confidence 3
No 41
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.01 E-value=2.4e-08 Score=83.98 Aligned_cols=140 Identities=12% Similarity=0.143 Sum_probs=105.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhh-hcCCCCCchhHHHHHHHHHH
Q 038856 108 YGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVT-MNFPLLFYPGFQVVMLLSCI 186 (257)
Q Consensus 108 ~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 186 (257)
.|..+.++++++++...+..|.. . +.++.++.++..+++.+.+.++....++.... ...+.....+.+..+...|+
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~--~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 78 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-K--PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGL 78 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-c--cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHH
Confidence 48889999999999999999873 3 48999999999999888776665443332110 01111011122444566666
Q ss_pred HHHHHHHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHh
Q 038856 187 MAFLINYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAY 251 (257)
Q Consensus 187 ~~~~~~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~ 251 (257)
+........+++++++++..++++.+..|++++++++++++| +++..+++|..+.++|+.+...
T Consensus 79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~E-k~~~~~~l~~~~~~~Gv~li~~ 142 (256)
T TIGR00688 79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKE-RISRFQFIAVIIATLGVISNIV 142 (256)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHH
Confidence 644444555889999999999999999999999999999996 9999999999999999886543
No 42
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.93 E-value=6.7e-08 Score=82.51 Aligned_cols=134 Identities=10% Similarity=0.092 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchhHHHHHHHHHHHHH
Q 038856 110 YAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFYPGFQVVMLLSCIMAF 189 (257)
Q Consensus 110 ~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 189 (257)
..+.+++++++|...+.+|+..++ .++. ..+.+..+.+.+.|+....... .+.+. .+...+..++..++...
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~--~~~~--~~~~~~~~~~~l~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~ 74 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK--EPDF--LWWALLAHSVLLTPYGLWYLAQ---VGWSR-LPATFWLLLAISAVANM 74 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc--hhHH--HHHHHHHHHHHHHHHHHHhccc---CCCCC-cchhhHHHHHHHHHHHH
Confidence 467899999999999999987663 2333 3555556666666665432110 01111 12333555666666666
Q ss_pred HHHHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhh
Q 038856 190 LINYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYC 252 (257)
Q Consensus 190 ~~~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~ 252 (257)
...++.+.+.++.++...+.+.+..|+++.+++++++|| +++..+++|..+++.|+++....
T Consensus 75 ~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e-~~~~~~~~g~~~~~~Gv~ll~~~ 136 (281)
T TIGR03340 75 VYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGE-TLSPLAWLGILIITLGLLVLGLS 136 (281)
T ss_pred HHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhcc
Confidence 666666889999999999999999999999999999996 99999999999999999876543
No 43
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.74 E-value=2.5e-08 Score=73.90 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=71.3
Q ss_pred CCCcChhHHHHHhHHHHH-HHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhh
Q 038856 20 TTLVPLKTLVHTLPLALS-YLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLA 98 (257)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~ 98 (257)
.++.+.+++......+.+ ....+.+.+.++++++++..+.+.++.|+++.+++++++||+++++++.++.+++.|++++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 45 FKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred ccCCChhhhhhhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 355666777777888877 5889999999999999999999999999999999999999999999999999999999875
No 44
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.69 E-value=1.1e-06 Score=77.42 Aligned_cols=138 Identities=11% Similarity=0.157 Sum_probs=107.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchhHHHHHHHHHHH
Q 038856 108 YGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFYPGFQVVMLLSCIM 187 (257)
Q Consensus 108 ~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 187 (257)
.-+..++..-++|+.+.++.|...+. +.++....++-..++.+.+.|+....++.. ..+ ..+...+..+...|++
T Consensus 13 ~~~~~~~~~q~~~~~~~~~~k~a~~~-G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~---~~~-~~~~~~~~~l~l~g~~ 87 (358)
T PLN00411 13 VFLTAMLATETSVVGISTLFKVATSK-GLNIYPFLGYSYLLASLLLLPSLFFTNRSR---SLP-PLSVSILSKIGLLGFL 87 (358)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHC-CCCccHHHHHHHHHHHHHHHHHHHHHHHhc---ccC-cchHHHHHHHHHHHHH
Confidence 34566777788999999999988744 789999999999888888888876532210 011 1123345666777777
Q ss_pred HHHHHHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHh------cCCcCcchhhhhHHHHHHHHHHHHHh
Q 038856 188 AFLINYYVFLNTILNSALTQTICGNLKDLLTIGLGWLL------FGGLPFDLFNIVGQALGFLGSCFYAY 251 (257)
Q Consensus 188 ~~~~~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~------f~e~~~t~~~~~G~~li~~g~~~~~~ 251 (257)
+...+...+.++++++|..++++.+..|+++.++++++ ++| +++..+++|.++.++|+.+...
T Consensus 88 g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~e-r~~~~~~~G~~l~~~Gv~ll~~ 156 (358)
T PLN00411 88 GSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKE-RSSVAKVMGTILSLIGALVVIF 156 (358)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcc-cccHHHHHHHHHHHHHHHHHHH
Confidence 74344455889999999999999999999999999999 685 9999999999999999987654
No 45
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.68 E-value=1.1e-06 Score=65.97 Aligned_cols=124 Identities=12% Similarity=0.032 Sum_probs=88.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchhHHHHHHHHHHH
Q 038856 108 YGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFYPGFQVVMLLSCIM 187 (257)
Q Consensus 108 ~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 187 (257)
.|+.+.+.+.++.+..++..|+-.++.+ ..+.... . ..... .. .++ ...++.|+.
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g--~~~~~~~-~----~~~~~-~~--------------~~p---~~~i~lgl~ 56 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLP--LLSHAWD-F----IAALL-AF--------------GLA---LRAVLLGLA 56 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCC--CccchhH-H----HHHHH-HH--------------hcc---HHHHHHHHH
Confidence 4788999999999999999998665432 1111110 0 00000 00 111 124566666
Q ss_pred HHHHHHHH-HHHhhccchhHHHHHhHhHHHHHHHHHHH--hcCCcCcchhhhhHHHHHHHHHHHHHhhhhcCC
Q 038856 188 AFLINYYV-FLNTILNSALTQTICGNLKDLLTIGLGWL--LFGGLPFDLFNIVGQALGFLGSCFYAYCKLQGK 257 (257)
Q Consensus 188 ~~~~~~~~-~~~i~~~~~~~~s~~~~~~~i~~~~~~~~--~f~e~~~t~~~~~G~~li~~g~~~~~~~k~~~~ 257 (257)
+...++.. ..++++.+...+.......++...+.++. +||| ++|+.+++|..++++|+++.++.++++|
T Consensus 57 ~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E-~ls~~~~iGi~lIi~GV~lv~~~~~~~~ 128 (129)
T PRK02971 57 GYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNE-TFSLKKTLGVACIMLGVWLINLPTTKAR 128 (129)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 66666665 78899999999988888888888888875 7996 9999999999999999999998877664
No 46
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.57 E-value=5.8e-07 Score=65.74 Aligned_cols=64 Identities=14% Similarity=0.121 Sum_probs=59.5
Q ss_pred HHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhc
Q 038856 36 LSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAG 99 (257)
Q Consensus 36 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~ 99 (257)
+.+....++...+++.+|++.+..+-++.++++.+.+++++|||+++++++++.++++|++++.
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4467788899999999999999999999999999999999999999999999999999998764
No 47
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.55 E-value=8.6e-07 Score=76.17 Aligned_cols=214 Identities=15% Similarity=0.140 Sum_probs=119.4
Q ss_pred HHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhcc--ccc-c-cc-----
Q 038856 36 LSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGA--RDL-S-FD----- 106 (257)
Q Consensus 36 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~--~~~-~-~~----- 106 (257)
+++.....+++.|+.+.|.+..+-+....-++.++++..++|||++++++.|+.+++.|+.+... ++. + .+
T Consensus 58 ~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~ 137 (300)
T PF05653_consen 58 LLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELI 137 (300)
T ss_pred HHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHH
Confidence 45677788999999999999999999999999999999999999999999999999999976532 111 0 10
Q ss_pred -------hhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHH---H-HHhcCchhhhhcCCCCCch
Q 038856 107 -------AYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLF---W-TSFRGDLEVTMNFPLLFYP 175 (257)
Q Consensus 107 -------~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~---~-~~~~~~~~~~~~~~~~~~~ 175 (257)
...+........+.-.+.. .+|..+ .+..--....++.+....+. . ..+.+... ......++
T Consensus 138 ~~~~~~~fl~y~~~~~~~~~~L~~~~-~~r~g~---~~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~---g~~~f~~~ 210 (300)
T PF05653_consen 138 ALLSQPGFLVYFILVLVLILILIFFI-KPRYGR---RNILVYISICSLIGSFTVLSAKAISILIKLTFS---GDNQFTYP 210 (300)
T ss_pred HHhcCcceehhHHHHHHHHHHHHHhh-cchhcc---cceEEEEEEeccccchhhhHHHHHHHHHHHHhc---Cchhhhhh
Confidence 1112112211111111111 112111 11110000111111110000 0 01111110 01112344
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHhH-hHHHHHHHHHHHhcCCc-Ccch----hhhhHHHHHHHHHHHH
Q 038856 176 GFQVVMLLSCIMAFLINYYVFLNTILNSALTQTICGN-LKDLLTIGLGWLLFGGL-PFDL----FNIVGQALGFLGSCFY 249 (257)
Q Consensus 176 ~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~-~~~i~~~~~~~~~f~e~-~~t~----~~~~G~~li~~g~~~~ 249 (257)
..|..++....++..--+..+.++++.++.......+ .-...+++-|.++|+|. ..++ ....|..+++.|+.+-
T Consensus 211 ~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL 290 (300)
T PF05653_consen 211 LTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLL 290 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhhee
Confidence 4455544444444444445588888876554333222 33456777788889852 3444 4567888899999988
Q ss_pred HhhhhcC
Q 038856 250 AYCKLQG 256 (257)
Q Consensus 250 ~~~k~~~ 256 (257)
+..|..|
T Consensus 291 ~~~~~~~ 297 (300)
T PF05653_consen 291 SSSKDKE 297 (300)
T ss_pred eccCchh
Confidence 7776554
No 48
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.48 E-value=1.4e-07 Score=69.00 Aligned_cols=77 Identities=22% Similarity=0.330 Sum_probs=72.0
Q ss_pred cChhHHHHHhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhc
Q 038856 23 VPLKTLVHTLPLALSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAG 99 (257)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~ 99 (257)
++.|.+......|+....++.+++.|++.-+++...-+..+.|+++.+++++++|||++..+|+++.++.+|++++.
T Consensus 62 ~~~k~~lflilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 62 IGPKSWLFLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred cCcceehhhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 57777888888898899999999999999999999999999999999999999999999999999999999998754
No 49
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.44 E-value=6.6e-06 Score=60.37 Aligned_cols=106 Identities=19% Similarity=0.245 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHhcCchhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHH-HHHhhccchhHHHHHhHhHHHHHHHHHH
Q 038856 145 NGIICTPILLFWTSFRGDLEVTMNFPLLFYPGFQVVMLLSCIMAFLINYYV-FLNTILNSALTQTICGNLKDLLTIGLGW 223 (257)
Q Consensus 145 ~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~i~~~~~~~~s~~~~~~~i~~~~~~~ 223 (257)
....+.+.+.......++..+...... + ..+...+..|+++...++.. +++.++.++ ..+....+.|+++.++|.
T Consensus 4 r~~~~~l~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~ 79 (113)
T PF13536_consen 4 RYLFSVLFLLIILLIRGRLRDLFRALR--R-KPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSW 79 (113)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHH--h-CcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHH
Confidence 344555555555555444432211111 1 11334555566555444444 788888885 777889999999999999
Q ss_pred HhcCCcCcchhhhhHHHHHHHHHHHHHhhhhc
Q 038856 224 LLFGGLPFDLFNIVGQALGFLGSCFYAYCKLQ 255 (257)
Q Consensus 224 ~~f~e~~~t~~~~~G~~li~~g~~~~~~~k~~ 255 (257)
++++| +++..+++|.+++++|+++..+.+.+
T Consensus 80 ~~~~e-r~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 80 LFFKE-RLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 99996 99999999999999999999887654
No 50
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.41 E-value=2.4e-05 Score=67.14 Aligned_cols=129 Identities=16% Similarity=0.109 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchhHHHHHHHHHHHHHH
Q 038856 111 AVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFYPGFQVVMLLSCIMAFL 190 (257)
Q Consensus 111 ~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 190 (257)
...+.-.+.|+...+..|...+ +.+|.+..++....+.+.+.++.....+ . ..+.+.+......|.+...
T Consensus 11 ~~~~~~~~iWg~~~~~~K~~~~--~~~p~~~~~~R~~~a~l~ll~~~~~~~~-----~---~~~~~~~~~~~~~g~~~~~ 80 (292)
T PRK11272 11 GALFALYIIWGSTYLVIRIGVE--SWPPLMMAGVRFLIAGILLLAFLLLRGH-----P---LPTLRQWLNAALIGLLLLA 80 (292)
T ss_pred HHHHHHHHHHhhHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHHhCC-----C---CCcHHHHHHHHHHHHHHHH
Confidence 3455666889999999998776 6899999999999888887776543221 1 1122334445556655433
Q ss_pred H-HHHHHHHh-hccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHh
Q 038856 191 I-NYYVFLNT-ILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAY 251 (257)
Q Consensus 191 ~-~~~~~~~i-~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~ 251 (257)
. ....+.+. ++.++...+++.+..|+++.+++.+ +|| +++..+++|..+.++|+.+...
T Consensus 81 ~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e-~~~~~~~~~~~la~~Gv~ll~~ 141 (292)
T PRK11272 81 VGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGI-RTRKLEWLGIAIGLAGIVLLNS 141 (292)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcc-cCchhHHHHHHHHHHhHHHHhc
Confidence 3 23335666 8889999999999999999999985 786 9999999999999999887654
No 51
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.34 E-value=4.2e-05 Score=67.43 Aligned_cols=126 Identities=10% Similarity=0.083 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHhcccCCCC-hhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCC-chhHHHHHHHHHHHHHHHHHHH
Q 038856 118 ICTAAYLAFISRIGRSSGLS-SFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLF-YPGFQVVMLLSCIMAFLINYYV 195 (257)
Q Consensus 118 ~~~a~~~v~~~~~~~~~~~~-~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~ 195 (257)
.+...+++..|...++ .+ |+.+..++.+.+.+.+...... + .. ..+... ....+..++..|+++....+..
T Consensus 59 ~~s~~~~~~nK~vl~~--~~~P~~l~~~~~~~~~l~~~~~~~~-~-~~---~~~~~~~~~~~~~~llp~gl~~~~~~~~~ 131 (350)
T PTZ00343 59 ALNVLYVVDNKLALNM--LPLPWTISSLQLFVGWLFALLYWAT-G-FR---KIPRIKSLKLFLKNFLPQGLCHLFVHFGA 131 (350)
T ss_pred HHHHHHHHHHHHHHHh--CChhHHHHHHHHHHHHHHHHHHHHh-C-CC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567788888874 56 9999999998887665444221 1 10 111111 1234566777888777665556
Q ss_pred HHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHh
Q 038856 196 FLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAY 251 (257)
Q Consensus 196 ~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~ 251 (257)
+.+++.+++..++++...+|+++++++.++++| +++..++.|.+++++|+.+...
T Consensus 132 ~~sl~~~svs~~~iika~~Pvft~lls~~~l~e-k~s~~~~l~l~l~v~Gv~l~~~ 186 (350)
T PTZ00343 132 VISMGLGAVSFTHVVKAAEPVFTALLSILFLKQ-FLNLYAYLSLIPIVGGVALASV 186 (350)
T ss_pred HHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCC-CccHHHHHHHHHHHHHHHheec
Confidence 788999999999999999999999999999996 9999999999999999997654
No 52
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.32 E-value=1.5e-05 Score=66.99 Aligned_cols=115 Identities=15% Similarity=0.054 Sum_probs=85.7
Q ss_pred HHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchhHHHHHHHHHHHHHHHHH-HHHHHhhc
Q 038856 123 YLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFYPGFQVVMLLSCIMAFLINY-YVFLNTIL 201 (257)
Q Consensus 123 ~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~i~~ 201 (257)
..+..|...++ ..++....++..+.+.+.+.+..... + +...+......+.++....+ ..+.++++
T Consensus 4 ~~~~~k~~~~~-~~~~~~~~~~r~~~~~l~l~~~~~~~---------~---~~~~~~~~~~~~~~~~~l~~~~~~~a~~~ 70 (260)
T TIGR00950 4 TGVVIGQYLEG-QVPLYFAVFRRLIFALLLLLPLLRRR---------P---PLKRLLRLLLLGALQIGVFYVLYFVAVKR 70 (260)
T ss_pred hHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHhc---------c---CHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455665543 57888999999888887777654321 1 11223344455555444444 44789999
Q ss_pred cchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHh
Q 038856 202 NSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAY 251 (257)
Q Consensus 202 ~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~ 251 (257)
+++...+++....|+++.+++.+++|| +++..++.|..+.++|+.+...
T Consensus 71 ~~~~~~~ii~~~~P~~~~~~~~l~~~e-~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 71 LPVGEAALLLYLAPLYVTLLSDLMGKE-RPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred cChhhhHHHHhhhHHHHHHHHHHHccC-CCcHHHHHHHHHHHHhHHhhcc
Confidence 999999999999999999999999996 9999999999999999988654
No 53
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.32 E-value=3.5e-05 Score=66.39 Aligned_cols=124 Identities=13% Similarity=0.103 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchhHHHHHHHHHHHHHH
Q 038856 111 AVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFYPGFQVVMLLSCIMAFL 190 (257)
Q Consensus 111 ~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 190 (257)
...+.++++|+...+..|...+ +.+|.+..++...++.+.+.+... .+ . .+ +..+...|+....
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~--~~~p~~~~~~R~~~a~~~l~~~~~--~~--------~-~~---~~~~~~~g~~~~~ 70 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLH--NMPPLMLAGLRFMLVAFPAIFFVA--RP--------K-VP---LNLLLGYGLTISF 70 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHhc--CC--------C-Cc---hHHHHHHHHHHHH
Confidence 5578889999999999988776 689999999988776655544321 10 0 01 1122233443333
Q ss_pred HHHH-HHHHhhc-cchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHh
Q 038856 191 INYY-VFLNTIL-NSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAY 251 (257)
Q Consensus 191 ~~~~-~~~~i~~-~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~ 251 (257)
..+. .+.+.++ .++...+++.+..|+++.++++++++| +++..+++|..+.++|+.+...
T Consensus 71 ~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e-~~~~~~~~~~~l~~~Gv~ll~~ 132 (299)
T PRK11453 71 GQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGE-RLQGKQLAGIALAIFGVLVLIE 132 (299)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcC-cCcHHHHHHHHHHHHhHHHhcc
Confidence 3332 2566776 577889999999999999999999996 9999999999999999887764
No 54
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.29 E-value=3.6e-05 Score=64.45 Aligned_cols=141 Identities=13% Similarity=0.174 Sum_probs=110.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchhHHHHHHHHH
Q 038856 106 DAYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFYPGFQVVMLLSC 185 (257)
Q Consensus 106 ~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 185 (257)
+..|.+.++.+-+.+++.-.+.|-+. +.++.++..+-.+.+.++.........+.....+ ...++..+......+
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll~---~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~--~~~~p~~~~~~~l~a 79 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLLE---PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQ--LLKQPKTLLMLALTA 79 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH--HHhCcHHHHHHHHHH
Confidence 45799999999999999888876553 5788999999999888888777666665554433 223555455555555
Q ss_pred HHHHHHHHHH-HHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhhh
Q 038856 186 IMAFLINYYV-FLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYCK 253 (257)
Q Consensus 186 ~~~~~~~~~~-~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~k 253 (257)
.. ...|... .|+..+-....+|.--+++|.+.+++|.++++| +++..|++...+..+|+..-.+..
T Consensus 80 ~l-i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkE-rls~~Q~iAV~lA~~GV~~~~~~~ 146 (293)
T COG2962 80 LL-IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKE-RLSRLQWIAVGLAAAGVLIQTWLL 146 (293)
T ss_pred HH-HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHc
Confidence 44 2335555 688999999999999999999999999999996 999999999999999998766543
No 55
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.27 E-value=5.4e-05 Score=65.23 Aligned_cols=123 Identities=7% Similarity=-0.049 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 038856 120 TAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFYPGFQVVMLLSCIMAFLINYYVFLNT 199 (257)
Q Consensus 120 ~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i 199 (257)
...+++++|+..++. ..|..+.+++...+.+.+.+.-. .+.. ..+ ..+.+.+..++..|++........+.++
T Consensus 14 ~~~~~~~NK~~l~~~-~~P~~~~~~~~~~~~~~~~~~~~-~~~~----~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~l 86 (302)
T TIGR00817 14 NVYFNIYNKKLLNVF-PYPYFKTLISLAVGSLYCLLSWS-SGLP----KRL-KISSALLKLLLPVAIVHTIGHVTSNVSL 86 (302)
T ss_pred HHHHHHHHHHHHhhC-ChhHHHHHHHHHHHHHHHHHHHH-hCCC----CCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556778877642 45888888887777665544311 1111 111 1234456667777777644444558999
Q ss_pred hccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHH
Q 038856 200 ILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYA 250 (257)
Q Consensus 200 ~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~ 250 (257)
+++++..++++....|+++.++++++++| +++..++.|.+++++|+.+..
T Consensus 87 ~~~s~s~~~li~~~~Pv~~~ll~~~~~~e-~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 87 SKVAVSFTHTIKAMEPFFSVVLSAFFLGQ-EFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HhccHHHHHHHHhcchHHHHHHHHHHhCC-CCcHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999996 999999999999999998654
No 56
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.26 E-value=4.8e-05 Score=65.41 Aligned_cols=130 Identities=16% Similarity=0.113 Sum_probs=91.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchhHHHHHHHHHHH
Q 038856 108 YGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFYPGFQVVMLLSCIM 187 (257)
Q Consensus 108 ~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 187 (257)
.++..++.++++|+...+..|...+ +.+|....++-...+.+++.++.. .. ..+. .. +..++..++.
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~--~~~P~~~~~~R~~~a~l~l~~~~~---~~----~~~~-~~---~~~~~~~~l~ 70 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSE--SLGPVGGAAMIYSVSGLLLLLTVG---FP----RLRQ-FP---KRYLLAGGLL 70 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHc--cCChHHHHHHHHHHHHHHHHHHcc---cc----cccc-cc---HHHHHHHhHH
Confidence 4567889999999999999998777 688999988888777777665421 11 1111 11 1122233332
Q ss_pred HHHHHHHHHHHh----hccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHh
Q 038856 188 AFLINYYVFLNT----ILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAY 251 (257)
Q Consensus 188 ~~~~~~~~~~~i----~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~ 251 (257)
........+.+. +..++...+++.+..|+++.++++++++| +++..+++|..+.++|+++...
T Consensus 71 ~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e-~~~~~~~~g~~l~~~Gv~li~~ 137 (295)
T PRK11689 71 FVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQ-KANWLLIPGLLLALAGVAWVLG 137 (295)
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhHhheec
Confidence 222222223344 45678888999999999999999999996 9999999999999999887653
No 57
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.09 E-value=0.003 Score=55.20 Aligned_cols=227 Identities=12% Similarity=0.081 Sum_probs=134.3
Q ss_pred cChhHHHHHhHHHHHHHHHHHHhhhhhccccchHHHH-HHHHHHHHHHHHHHHHhCccc---Cc----chhHHHHHHHhh
Q 038856 23 VPLKTLVHTLPLALSYLLYMLITMEAVRGINVPMYTT-LRRTTVAFTMIVEYLLTGQKH---SL----PVVGSVGIILLG 94 (257)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~-~~~~~pv~~~i~~~l~~~e~~---~~----~~~~~~~~~~~G 94 (257)
.+.+.+..-+..|++....+..+..+++++.++...- ...++.+...+...++++|.. +. .-..+++++++|
T Consensus 68 ~~~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliG 147 (345)
T PRK13499 68 FSGSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIG 147 (345)
T ss_pred cCHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHH
Confidence 3455666777788888999999999999999997554 445778888888899988765 32 244677788899
Q ss_pred hhhhcc----ccc--------cc-chhhHHHHHHHHHHHHHHH-------HHHHHhcccCCCChhhHHHHHHH---HHHH
Q 038856 95 AFLAGA----RDL--------SF-DAYGYAVVFIANICTAAYL-------AFISRIGRSSGLSSFGLMWCNGI---ICTP 151 (257)
Q Consensus 95 v~~~~~----~~~--------~~-~~~G~~~~l~a~~~~a~~~-------v~~~~~~~~~~~~~~~~~~~~~l---~~~~ 151 (257)
+++... .|. +. ...|..+++++.+.++.|. ...+.. .+.+.++.....-+.. .+..
T Consensus 148 i~l~s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a-~~~g~~~~~~~lp~~~~~~~G~~ 226 (345)
T PRK13499 148 VAIVGRAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAA-AALGVDPLYAALPSYVVIMGGGA 226 (345)
T ss_pred HHHHHHhhhhcccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhh-hhcCCCchHHHHHHHHHHHHHHH
Confidence 988755 222 11 2479999999999999999 333322 1234555544433332 2222
Q ss_pred HHHH-HHHh---c-CchhhhhcCCCCCc--hhHHHHHHHHHHHHHHHHHHHHHHhhccchh----HHHHHhHhHHHHHHH
Q 038856 152 ILLF-WTSF---R-GDLEVTMNFPLLFY--PGFQVVMLLSCIMAFLINYYVFLNTILNSAL----TQTICGNLKDLLTIG 220 (257)
Q Consensus 152 ~l~~-~~~~---~-~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~----~~s~~~~~~~i~~~~ 220 (257)
..-. +-.. . ++.+...++..... ....+.-.+.|+.-...++....+-++.+.. ...+...+.-+++.+
T Consensus 227 ~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~Viistl 306 (345)
T PRK13499 227 ITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNL 306 (345)
T ss_pred HHHHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHH
Confidence 2211 1110 1 11110011110000 1222333455554444333334444444222 222444566688889
Q ss_pred HHHHhcCCcCcc------hhhhhHHHHHHHHHHHHHhh
Q 038856 221 LGWLLFGGLPFD------LFNIVGQALGFLGSCFYAYC 252 (257)
Q Consensus 221 ~~~~~f~e~~~t------~~~~~G~~li~~g~~~~~~~ 252 (257)
.|++ +|| .=+ ...++|.++++.|..+....
T Consensus 307 wGi~-lkE-~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 307 WGLV-LKE-WKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred hhhh-hhh-ccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 9984 886 545 67799999999998887654
No 58
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.99 E-value=3.8e-05 Score=57.62 Aligned_cols=71 Identities=24% Similarity=0.281 Sum_probs=62.4
Q ss_pred HhHHH-HHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHH--HhCcccCcchhHHHHHHHhhhhhhccc
Q 038856 31 TLPLA-LSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYL--LTGQKHSLPVVGSVGIILLGAFLAGAR 101 (257)
Q Consensus 31 ~~~~~-~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l--~~~e~~~~~~~~~~~~~~~Gv~~~~~~ 101 (257)
++..| +++....++++.+++..|++.+.-..+..++.+.+.++. ++||++++.++.+++++++|+.++..+
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 45556 456889999999999999999999999999999888885 799999999999999999999987543
No 59
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.97 E-value=0.00018 Score=61.69 Aligned_cols=132 Identities=14% Similarity=0.088 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchhHHHHHHHHHHHH
Q 038856 109 GYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFYPGFQVVMLLSCIMA 188 (257)
Q Consensus 109 G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 188 (257)
|..++++++++|+...+..|+.. +.++.+.. ...++...+........+ +....+..+..-..+|+.-
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~---g~~~~~~~--~~~~g~l~~~~~~~~~~~-------~~~~~~~~~~~g~l~G~~w 69 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG---GGPYSQTL--GTTFGALILSIAIAIFVL-------PEFWALSIFLVGLLSGAFW 69 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC---CCHHHHHH--HHHHHHHHHHHHHHHHhC-------CcccccHHHHHHHHHHHHH
Confidence 57889999999999999998764 34444443 233344444333322221 1112244445455666655
Q ss_pred HHHHHHHHHHhhccchhHHHHHhH-hHHHHHHHHHHHhcCCcCcchhh----hhHHHHHHHHHHHHHhhh
Q 038856 189 FLINYYVFLNTILNSALTQTICGN-LKDLLTIGLGWLLFGGLPFDLFN----IVGQALGFLGSCFYAYCK 253 (257)
Q Consensus 189 ~~~~~~~~~~i~~~~~~~~s~~~~-~~~i~~~~~~~~~f~e~~~t~~~----~~G~~li~~g~~~~~~~k 253 (257)
...|+..+.++|+.+....-.+.+ +.++...+.+.++||| +.+..+ ++|.+++++|.++....|
T Consensus 70 ~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e-~~t~~~~~~~~~g~~l~l~G~~l~~~~~ 138 (290)
T TIGR00776 70 ALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGE-WSTSIQTLLGLLALILIIIGVYLTSRSK 138 (290)
T ss_pred HhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhh-ccchHHHHHHHHHHHHHHHhHheEEecc
Confidence 555677788999988888866666 8888999999999996 999999 999999999999876654
No 60
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.95 E-value=0.00011 Score=53.63 Aligned_cols=55 Identities=13% Similarity=-0.080 Sum_probs=50.1
Q ss_pred HHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHh
Q 038856 196 FLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAY 251 (257)
Q Consensus 196 ~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~ 251 (257)
..++++.+...+...-.+.++.+.++|+++||| ++|+.+++|..++++|+++...
T Consensus 55 ~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E-~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 55 LLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHE-PVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHhc
Confidence 678899999888888889999999999999996 9999999999999999987654
No 61
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.95 E-value=0.00034 Score=60.40 Aligned_cols=125 Identities=14% Similarity=0.062 Sum_probs=89.3
Q ss_pred HHHHHHHHHhcccCCCC--hhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 038856 121 AAYLAFISRIGRSSGLS--SFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFYPGFQVVMLLSCIMAFLINYYVFLN 198 (257)
Q Consensus 121 a~~~v~~~~~~~~~~~~--~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 198 (257)
..+.+.++++.++...+ +..+++.|...+.+...+....... + +....+ +.-....+++-.......+.+
T Consensus 13 ~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~-----~-~~~~~~--~~~~~~~~~~~~~~~~~~~~a 84 (303)
T PF08449_consen 13 CSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKF-----P-KSRKIP--LKKYAILSFLFFLASVLSNAA 84 (303)
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-----c-CCCcCh--HHHHHHHHHHHHHHHHHHHHH
Confidence 34667778877654445 7778888887777666655443330 0 111111 222233344444445566889
Q ss_pred hhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhhhh
Q 038856 199 TILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYCKL 254 (257)
Q Consensus 199 i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~k~ 254 (257)
+++.+..+..+....+++++++++.+++|+ +.+..++++..++.+|+.++...+.
T Consensus 85 l~~i~~p~~~~~ks~~~i~vmi~~~l~~~k-~y~~~~~~~v~li~~Gv~~~~~~~~ 139 (303)
T PF08449_consen 85 LKYISYPTQIVFKSSKPIPVMILGVLILGK-RYSRRQYLSVLLITIGVAIFTLSDS 139 (303)
T ss_pred HHhCChHHHHHHhhhHHHHHHHHHHHhcCc-cccHHHHHHHHHHHhhHheeeeccc
Confidence 999999999999999999999999999995 9999999999999999999887654
No 62
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=5.8e-05 Score=64.01 Aligned_cols=216 Identities=16% Similarity=0.060 Sum_probs=121.8
Q ss_pred hHHH-HHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhccccccc-----
Q 038856 32 LPLA-LSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGARDLSF----- 105 (257)
Q Consensus 32 ~~~~-~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~~~~~~----- 105 (257)
...| +.+...-..++.|..+-|.+..+-+.++..+..++++..++|||+++...+|+.++++|..++....++.
T Consensus 67 Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t 146 (335)
T KOG2922|consen 67 WWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIES 146 (335)
T ss_pred HHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCccccccc
Confidence 3445 4467889999999999999999999999999999999999999999999999999999998774332210
Q ss_pred ---------c--hhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHH--HhcCchh--hhhcCC
Q 038856 106 ---------D--AYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWT--SFRGDLE--VTMNFP 170 (257)
Q Consensus 106 ---------~--~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~--~~~~~~~--~~~~~~ 170 (257)
+ ..-+...+.-.++.=.+ +.|. ++.+.+. +-|..+.+.+...-.+ -..++.- .....+
T Consensus 147 ~~el~~~~~~~~Fliy~~~iil~~~il~~--~~~p--~~g~tni---lvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ 219 (335)
T KOG2922|consen 147 VEEVWELATEPGFLVYVIIIILIVLILIF--FYAP--RYGQTNI---LVYIGICSLIGSLTVMSVKALGIAIKLTFSGNN 219 (335)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHhe--eecc--cccccce---eehhhHhhhhcceeeeeHHHHHHHHHHHhcCCc
Confidence 1 11111111111111111 1121 1111222 3343333332211000 0000000 001112
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHhH-hHHHHHHHHHHHhcCCc-Ccc----hhhhhHHHHHHH
Q 038856 171 LLFYPGFQVVMLLSCIMAFLINYYVFLNTILNSALTQTICGN-LKDLLTIGLGWLLFGGL-PFD----LFNIVGQALGFL 244 (257)
Q Consensus 171 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~-~~~i~~~~~~~~~f~e~-~~t----~~~~~G~~li~~ 244 (257)
+...+..|..++....+...--...+.+++..++...+...+ +-+.++++.|.+.|+|- ..+ .....|...++.
T Consensus 220 ql~~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~ 299 (335)
T KOG2922|consen 220 QLFYPLTWIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFL 299 (335)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhh
Confidence 223344444444443333332233477888766555544444 44567788888888752 223 445677888888
Q ss_pred HHHHHHhhhh
Q 038856 245 GSCFYAYCKL 254 (257)
Q Consensus 245 g~~~~~~~k~ 254 (257)
|+.+-...|.
T Consensus 300 G~flL~~~kd 309 (335)
T KOG2922|consen 300 GIFLLHRTKD 309 (335)
T ss_pred eeeEeeeecc
Confidence 8877765553
No 63
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.87 E-value=0.0011 Score=56.09 Aligned_cols=140 Identities=17% Similarity=0.136 Sum_probs=92.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchhHHHHHHHHHH
Q 038856 107 AYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFYPGFQVVMLLSCI 186 (257)
Q Consensus 107 ~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 186 (257)
..+....+.....++......|+..+. ..+.....++......+...+...... . .......+ +......+.
T Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~--~~~~~~~~~ 77 (292)
T COG0697 6 LLGLLALLLWGLLWGLSFIALKLAVES-LDPFLFAAALRFLIAALLLLPLLLLEP-R----GLRPALRP--WLLLLLLAL 77 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-cCChHHHHHHHHHHHHHHHHHHHHhhc-c----cccccccc--hHHHHHHHH
Confidence 356777778888888888888877653 244555555565555554333222110 0 00110111 223333344
Q ss_pred HHHHH-HHHHHHHhhccchhHHHHHhHhHHHHHHHHHH-HhcCCcCcchhhhhHHHHHHHHHHHHHhhhhc
Q 038856 187 MAFLI-NYYVFLNTILNSALTQTICGNLKDLLTIGLGW-LLFGGLPFDLFNIVGQALGFLGSCFYAYCKLQ 255 (257)
Q Consensus 187 ~~~~~-~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~-~~f~e~~~t~~~~~G~~li~~g~~~~~~~k~~ 255 (257)
+.... .+..+.+++++++...+...+..|++..+++. ++++| +++..++.|..+.+.|+++..+....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e-~~~~~~~~~~~~~~~Gv~lv~~~~~~ 147 (292)
T COG0697 78 LGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGE-RLSLLQILGILLALAGVLLILLGGGG 147 (292)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHhHHheecCCCc
Confidence 33333 34447789999999999999999999999997 66686 99999999999999999988776543
No 64
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.85 E-value=9.2e-05 Score=54.65 Aligned_cols=70 Identities=17% Similarity=0.192 Sum_probs=61.6
Q ss_pred HhHHHHHHHHHHHHhhhhhccccchHHHHHH-HHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhcc
Q 038856 31 TLPLALSYLLYMLITMEAVRGINVPMYTTLR-RTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGA 100 (257)
Q Consensus 31 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~-~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~ 100 (257)
....-+++..+.++...+++++|++.+..+- ....+.+.+.+.+++||++++.++.++.++++|++.+-.
T Consensus 33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 3445567788999999999999999988774 689999999999999999999999999999999988743
No 65
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.76 E-value=0.00016 Score=62.17 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=63.4
Q ss_pred hHHHHHhHHHHHH-HHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhc
Q 038856 26 KTLVHTLPLALSY-LLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAG 99 (257)
Q Consensus 26 ~~~~~~~~~~~~~-~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~ 99 (257)
..+...+..++.. .....+++.++++++++.++...++.|++..++++++++|++++.++++..+++.|+....
T Consensus 206 ~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~ 280 (293)
T PRK10532 206 SILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGST 280 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 3333344556554 5677789999999999999999999999999999999999999999999999999998764
No 66
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.76 E-value=0.0023 Score=48.66 Aligned_cols=131 Identities=21% Similarity=0.206 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchhHHHHHHHHHHHHH
Q 038856 110 YAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFYPGFQVVMLLSCIMAF 189 (257)
Q Consensus 110 ~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 189 (257)
..+++.+-.+.+.....+.++.++.+ |++.-.+.+...+.+.+.......++. +.....+..+| ....|+++.
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~g-s~~~as~i~~~~G~i~~~i~~~~~~~~----~~~~~~~~p~w--~~lGG~lG~ 75 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALG-SPLVASFISFGVGFILLLIILLITGRP----SLASLSSVPWW--AYLGGLLGV 75 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHHHHhccc----ccchhccCChH--HhccHHHHH
Confidence 45677777888888888888876433 588888888888888887776666553 11111222223 334888888
Q ss_pred HHHHHHHHHhhccchhHHHHHhHhHHHHH-HHHHHH-hcC--CcCcchhhhhHHHHHHHHHH
Q 038856 190 LINYYVFLNTILNSALTQTICGNLKDLLT-IGLGWL-LFG--GLPFDLFNIVGQALGFLGSC 247 (257)
Q Consensus 190 ~~~~~~~~~i~~~~~~~~s~~~~~~~i~~-~~~~~~-~f~--e~~~t~~~~~G~~li~~g~~ 247 (257)
..-++....+++.++...........+.+ .+++.+ +|+ .+++++.+++|.+++++|++
T Consensus 76 ~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~ 137 (138)
T PF04657_consen 76 FFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI 137 (138)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence 87777788899999999888777666555 444443 232 13789999999999999986
No 67
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.75 E-value=0.00099 Score=58.03 Aligned_cols=140 Identities=12% Similarity=0.173 Sum_probs=93.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcccCCCC-hhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchhHHHHHHHHHH
Q 038856 108 YGYAVVFIANICTAAYLAFISRIGRSSGLS-SFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFYPGFQVVMLLSCI 186 (257)
Q Consensus 108 ~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~-~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 186 (257)
.+.+++=.-++|-+..++....+.++ +.+ |....+++.........+........+. +.......+|..++ .++
T Consensus 13 ~~~~lgQ~lsl~~~~t~~~s~~l~~~-~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~---~~~~~~~~~w~y~l-la~ 87 (334)
T PF06027_consen 13 IVLLLGQVLSLCITGTGTFSSLLANK-GVNIPTFQSFFNYVLLALVYTPILLYRRGFKK---WLKVLKRPWWKYFL-LAL 87 (334)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhc-CccCcHHHHHHHHHHHHHHHhhhhhhcccccc---chhhcchhHHHHHH-HHH
Confidence 34455555555555566665555544 333 5555566665444444444333221111 00001122344444 467
Q ss_pred HHHHHHHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhhh
Q 038856 187 MAFLINYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYCK 253 (257)
Q Consensus 187 ~~~~~~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~k 253 (257)
+=...+|....+.++++.+.++++.....+++.+++++++++ ++++.+++|+.++++|+.+....+
T Consensus 88 ~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~-ry~~~~~~gv~i~i~Gv~lv~~sD 153 (334)
T PF06027_consen 88 LDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKR-RYSWFHILGVLICIAGVVLVVVSD 153 (334)
T ss_pred HHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHh-hhhHHHHHHHHHHHhhhhheeeec
Confidence 777889999999999999999999999999999999999996 999999999999999988766554
No 68
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.68 E-value=0.00029 Score=51.29 Aligned_cols=66 Identities=12% Similarity=0.234 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhhhhhccccchHHHHHH-HHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhcc
Q 038856 35 ALSYLLYMLITMEAVRGINVPMYTTLR-RTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGA 100 (257)
Q Consensus 35 ~~~~~~~~~~~~~al~~~~~~~~~~~~-~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~ 100 (257)
-+.+..+.++...+++.+|++.+...- ....+.+.+.+++++||++++.++.++.++++|++.+..
T Consensus 37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 455677888888999999999988774 478999999999999999999999999999999998743
No 69
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.63 E-value=0.00038 Score=50.48 Aligned_cols=66 Identities=20% Similarity=0.204 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhhhhhccccchHHHHHH-HHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhh
Q 038856 33 PLALSYLLYMLITMEAVRGINVPMYTTLR-RTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLA 98 (257)
Q Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~~~~~~~-~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~ 98 (257)
..-+.+..+.++-..++|.+|++.+...- ....+.+.+.+.+++||++++.++.++.+++.|++.+
T Consensus 40 ~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 40 LSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 33455677888888999999999966554 4788999999999999999999999999999999874
No 70
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.63 E-value=0.00041 Score=50.03 Aligned_cols=66 Identities=15% Similarity=0.110 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhhhhhccccchHHHHHHH-HHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhh
Q 038856 33 PLALSYLLYMLITMEAVRGINVPMYTTLRR-TTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLA 98 (257)
Q Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~~~~~~~~-~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~ 98 (257)
..-+.+..+.++-..+++.+|++.+...-. ...+.+.+.+.+++||++++.++.++.+.+.|++.+
T Consensus 34 ~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 34 ITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 334566778888889999999999665555 889999999999999999999999999999999875
No 71
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.62 E-value=0.00037 Score=49.91 Aligned_cols=67 Identities=21% Similarity=0.169 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhhhhhccccchHHH-HHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhc
Q 038856 33 PLALSYLLYMLITMEAVRGINVPMYT-TLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAG 99 (257)
Q Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~~~~-~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~ 99 (257)
..-+.+..+..+-..|++.+|++.+. +-.....+.+.+.+++++||+.++.++.++.+.++|++.+-
T Consensus 35 l~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 35 LTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLK 102 (106)
T ss_pred HHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhh
Confidence 33455677788888999999999855 45567889999999999999999999999999999998753
No 72
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=97.49 E-value=1.6e-05 Score=64.83 Aligned_cols=215 Identities=13% Similarity=0.159 Sum_probs=142.7
Q ss_pred ChhHHHHHhHHHHHHHHHHHHhhhhhccccchHHHHH-HHHHHHHHHHHHHHHhCcccCcchh----HHHHHHHhhhhhh
Q 038856 24 PLKTLVHTLPLALSYLLYMLITMEAVRGINVPMYTTL-RRTTVAFTMIVEYLLTGQKHSLPVV----GSVGIILLGAFLA 98 (257)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~-~~~~pv~~~i~~~l~~~e~~~~~~~----~~~~~~~~Gv~~~ 98 (257)
+.+.+..-+..|++....+...+.|++++.++.+.=+ ..++-+-+.+++.+.+||+.+..+. .++++.+.|+.+.
T Consensus 55 T~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lT 134 (288)
T COG4975 55 TLTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLT 134 (288)
T ss_pred chhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEe
Confidence 4455556666778888899999999999999876543 3467788899999999999888776 5677788888887
Q ss_pred ccccc---c-----cchhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCC
Q 038856 99 GARDL---S-----FDAYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFP 170 (257)
Q Consensus 99 ~~~~~---~-----~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~ 170 (257)
...|. + .--.|....+.+.+.|-.|.+..+.. +.|.++...-|+.-..+.-+.+....+|.
T Consensus 135 s~~~~~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f----~v~g~saiLPqAiGMv~~ali~~~~~~~~------- 203 (288)
T COG4975 135 SKQDRNNKEEENPSNLKKGIVILLISTLGYVGYVVLFQLF----DVDGLSAILPQAIGMVIGALILGFFKMEK------- 203 (288)
T ss_pred eeeccccccccChHhhhhheeeeeeeccceeeeEeeeccc----cccchhhhhHHHHHHHHHHHHHhhccccc-------
Confidence 66543 1 11358888999999999999887643 46666666655543222222222222111
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhhccc-hhHHHHHhHhHHHHHHHHHHHhcCCcCcchhh----hhHHHHHHHH
Q 038856 171 LLFYPGFQVVMLLSCIMAFLINYYVFLNTILNS-ALTQTICGNLKDLLTIGLGWLLFGGLPFDLFN----IVGQALGFLG 245 (257)
Q Consensus 171 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~-~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~----~~G~~li~~g 245 (257)
........-...|+.-...|...+.+-++.+ ++.+|. ..+.-+.+.+-|+++++| +=|..+ +.|.+++++|
T Consensus 204 --~~~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSl-SQlgViisTiGGIl~L~e-kKtkkEm~~v~iGiilivvg 279 (288)
T COG4975 204 --RFNKYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSL-SQLGVIISTIGGILFLGE-KKTKKEMVYVIIGIILIVVG 279 (288)
T ss_pred --chHHHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeH-hhheeeeeecceEEEEec-cCchhhhhhhhhhHHHHHHH
Confidence 1112234456667666666776655555443 333333 445568888999999996 777665 4677888888
Q ss_pred HHHHHhhh
Q 038856 246 SCFYAYCK 253 (257)
Q Consensus 246 ~~~~~~~k 253 (257)
..+....|
T Consensus 280 ai~lg~~K 287 (288)
T COG4975 280 AILLGIAK 287 (288)
T ss_pred hhhhheec
Confidence 77665544
No 73
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.49 E-value=0.00054 Score=52.64 Aligned_cols=72 Identities=14% Similarity=0.223 Sum_probs=65.7
Q ss_pred hHHHHHhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhh
Q 038856 26 KTLVHTLPLALSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFL 97 (257)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~ 97 (257)
+.+...+..+++....+.+.+..++++++-+++++.....+.+.+.++++++|+++..++.|+++++.|+..
T Consensus 79 ~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 79 NFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 445566666777889999999999999999999999999999999999999999999999999999999875
No 74
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.30 E-value=0.0029 Score=46.05 Aligned_cols=57 Identities=21% Similarity=0.238 Sum_probs=45.9
Q ss_pred HHHhhccch-hHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhhh
Q 038856 196 FLNTILNSA-LTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYCK 253 (257)
Q Consensus 196 ~~~i~~~~~-~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~k 253 (257)
..++|+.+. .-+++..-+..+.+++.|+++||| ++|+.+++|+.++++|++.-+..+
T Consensus 48 ~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e-~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 48 AQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQ-RLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHhcCC
Confidence 456666543 334555667888899999999996 999999999999999999987654
No 75
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.20 E-value=0.0017 Score=45.77 Aligned_cols=56 Identities=16% Similarity=0.215 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhhhhccccchHHHHH-HHHHHHHHHHHHHHHhCcccCcchhHHHHHH
Q 038856 36 LSYLLYMLITMEAVRGINVPMYTTL-RRTTVAFTMIVEYLLTGQKHSLPVVGSVGII 91 (257)
Q Consensus 36 ~~~~~~~~~~~~al~~~~~~~~~~~-~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~ 91 (257)
..+..+.++...+++++|++.+... .....+.+.+.+.+++||++++.++.++.++
T Consensus 37 ~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 37 VGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 4678888999999999999997655 5699999999999999999999999998763
No 76
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.16 E-value=0.0048 Score=44.21 Aligned_cols=57 Identities=23% Similarity=0.207 Sum_probs=48.2
Q ss_pred HHHhhccc-hhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhhh
Q 038856 196 FLNTILNS-ALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYCK 253 (257)
Q Consensus 196 ~~~i~~~~-~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~k 253 (257)
..++|+.+ .+-+++..-+..+.+++.|+++||| ++++.+++|..++++|++.-+..+
T Consensus 48 s~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E-~l~~~~~~gl~LiiaGvi~Lk~~s 105 (106)
T COG2076 48 SLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGE-SLSLIKLLGLALILAGVIGLKLGS 105 (106)
T ss_pred HHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCC-cCCHHHHHHHHHHHHHHHHhhhcC
Confidence 56777765 3456788888999999999999996 999999999999999999876543
No 77
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.11 E-value=0.0025 Score=53.23 Aligned_cols=76 Identities=13% Similarity=0.071 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhhhh
Q 038856 178 QVVMLLSCIMAFLINYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYCKL 254 (257)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~k~ 254 (257)
...+...+++-..-+...+.++++.+|.++++....|.+.+.++++++++. +++..||++..+.+.|+.+.+....
T Consensus 17 ~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r-~ls~~qW~aL~lL~~Gv~lv~~~~~ 92 (244)
T PF04142_consen 17 TLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKR-RLSRRQWLALFLLVAGVVLVQLSSS 92 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHc-ccchhhHHHHHHHHHHHheeecCCc
Confidence 445566666666667777899999999999999999999999999999995 9999999999999999998776543
No 78
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.05 E-value=0.013 Score=51.34 Aligned_cols=137 Identities=12% Similarity=0.082 Sum_probs=88.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHH--HHHHHHHHHHH--HHhcCchhhhhcCCCCCchhHHHHHH
Q 038856 107 AYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCN--GIICTPILLFW--TSFRGDLEVTMNFPLLFYPGFQVVML 182 (257)
Q Consensus 107 ~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~--~l~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~ 182 (257)
..|+.+.+++++|++-..+-+|| .++ -+|+.. |- .+++.+++... .+..++. .++-...++..+..-.
T Consensus 6 ~~G~~~~~i~~~~~GS~~~p~K~-~k~---w~wE~~-W~v~gi~~wl~~~~~~g~~~~~~f---~~~~~~~~~~~~~~~~ 77 (345)
T PRK13499 6 ILGIIWHLIGGASSGSFYAPFKK-VKK---WSWETM-WSVGGIFSWLILPWLIAALLLPDF---WAYYSSFSGSTLLPVF 77 (345)
T ss_pred HHHHHHHHHHHHHhhcccccccc-cCC---CchhHH-HHHHHHHHHHHHHHHHHHHHhhhH---HHHHHhcCHHHHHHHH
Confidence 46999999999999999888887 342 344443 32 22333333211 1111121 1222224566667777
Q ss_pred HHHHHHHHHHHHHHHHhhccchh-HHHHHhHhHHHHHHHHHHHhcCCcC------cchhhhhHHHHHHHHHHHHHh
Q 038856 183 LSCIMAFLINYYVFLNTILNSAL-TQTICGNLKDLLTIGLGWLLFGGLP------FDLFNIVGQALGFLGSCFYAY 251 (257)
Q Consensus 183 ~~~~~~~~~~~~~~~~i~~~~~~-~~s~~~~~~~i~~~~~~~~~f~e~~------~t~~~~~G~~li~~g~~~~~~ 251 (257)
++|++-...|...+..+|+.+-. ...+..-+.-+..++++.+++||-+ -.....+|.+++++|+.+.++
T Consensus 78 l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 78 LFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred HHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 78887777777777888876544 3444455777888999999998511 124578899999999999998
No 79
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=96.97 E-value=0.008 Score=44.39 Aligned_cols=57 Identities=14% Similarity=0.089 Sum_probs=45.4
Q ss_pred HHHhhccchh-HHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhhh
Q 038856 196 FLNTILNSAL-TQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYCK 253 (257)
Q Consensus 196 ~~~i~~~~~~-~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~k 253 (257)
..++|+.+.. -+++..-+..+.+++.|+++||| ++|+.+++|+.++++|++.-+...
T Consensus 48 s~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E-~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 48 SFAVKKIALGVAYALWEGIGILFITLFSVLLFDE-SLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHhhcCC
Confidence 4566665433 34555567888999999999996 999999999999999999887644
No 80
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.91 E-value=0.01 Score=42.77 Aligned_cols=56 Identities=11% Similarity=-0.014 Sum_probs=46.8
Q ss_pred HHHhhccc-hhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhh
Q 038856 196 FLNTILNS-ALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYC 252 (257)
Q Consensus 196 ~~~i~~~~-~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~ 252 (257)
..++|+.+ ...+++..-+..+.+++.|+++||| ++|+.+++|+.++++|++.-+..
T Consensus 47 s~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e-~~~~~~~~gi~lIi~GVv~l~l~ 103 (105)
T PRK11431 47 AWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGE-SASPARLLSLALIVAGIIGLKLS 103 (105)
T ss_pred HHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHhhhcc
Confidence 56677654 4556777888899999999999996 99999999999999999876543
No 81
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.86 E-value=0.048 Score=39.56 Aligned_cols=54 Identities=19% Similarity=0.283 Sum_probs=45.3
Q ss_pred HHHhhccch-hHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHH
Q 038856 196 FLNTILNSA-LTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYA 250 (257)
Q Consensus 196 ~~~i~~~~~-~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~ 250 (257)
..+.|+.+. ..+++..-+..+.+++.|+++||| ++|+.+++|+.+++.|++.-+
T Consensus 53 s~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e-~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 53 SQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQ-RLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHhc
Confidence 566777653 456777788889999999999996 999999999999999998753
No 82
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=96.82 E-value=0.0049 Score=50.85 Aligned_cols=73 Identities=16% Similarity=0.161 Sum_probs=59.5
Q ss_pred ChhHHHHHhHHHHHH-HHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhh
Q 038856 24 PLKTLVHTLPLALSY-LLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAF 96 (257)
Q Consensus 24 ~~~~~~~~~~~~~~~-~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~ 96 (257)
+.+....-+..+++. ..=+.+.+.+++.+|...+.++.++.|.+.++.++++++|++|..||+++..++.++.
T Consensus 205 ~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa 278 (292)
T COG5006 205 SPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA 278 (292)
T ss_pred ChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 333333444444443 3457788899999999999999999999999999999999999999999998887765
No 83
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.69 E-value=0.0068 Score=52.21 Aligned_cols=117 Identities=20% Similarity=0.182 Sum_probs=81.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchhHHHHHHHHH
Q 038856 106 DAYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFYPGFQVVMLLSC 185 (257)
Q Consensus 106 ~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 185 (257)
...|..+++.++++.+...+++|+-..+.+.++..-. ++ ..+...++.+|..++..+
T Consensus 5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~------------------~~-----~~~~l~~~~W~~G~~~~~ 61 (300)
T PF05653_consen 5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG------------------SG-----GRSYLRRPLWWIGLLLMV 61 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc------------------ch-----hhHHHhhHHHHHHHHHHh
Confidence 3579999999999999999999986543222111000 00 001113444555554433
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHH
Q 038856 186 IMAFLINYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYA 250 (257)
Q Consensus 186 ~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~ 250 (257)
+ +-..+ +.++...++...+.++.+.-+...+++..++|| +++..++.|..+++.|..+..
T Consensus 62 ~-g~~~~---~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e-~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 62 L-GEILN---FVALGFAPASLVAPLGALSLVFNAVLARFFLGE-KLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred c-chHHH---HHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcc-cchHhHHhhHHHHHhhheeeE
Confidence 3 22222 456777888889999999999999999999996 999999999999999987543
No 84
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.38 E-value=0.26 Score=37.72 Aligned_cols=140 Identities=14% Similarity=0.039 Sum_probs=85.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchhHHHHHHHHHHH
Q 038856 108 YGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFYPGFQVVMLLSCIM 187 (257)
Q Consensus 108 ~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 187 (257)
...+.++.+..+.+...-...++.+..+ +|..-.+.+...+...+.......++.... . ...+..+| ....|++
T Consensus 5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~-spl~As~isf~vGt~~L~~l~l~~~~~~~~-a--~~~~~pwW--~~~GG~l 78 (150)
T COG3238 5 LYLLFAILAGALLPLQAAINGRLARYLG-SPLLASLISFLVGTVLLLILLLIKQGHPGL-A--AVASAPWW--AWIGGLL 78 (150)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCch-h--hccCCchH--HHHccch
Confidence 4566777778888888877777766433 566666677777777776665553332211 1 11222223 3345566
Q ss_pred HHHHHHHHHHHhhccchhHHHHHhHhHHH-HHHHHHHHhcC---CcCcchhhhhHHHHHHHHHHHHHhhh
Q 038856 188 AFLINYYVFLNTILNSALTQTICGNLKDL-LTIGLGWLLFG---GLPFDLFNIVGQALGFLGSCFYAYCK 253 (257)
Q Consensus 188 ~~~~~~~~~~~i~~~~~~~~s~~~~~~~i-~~~~~~~~~f~---e~~~t~~~~~G~~li~~g~~~~~~~k 253 (257)
+..+-+.......+.++.....+.....+ .+.+++.+=+. +.+++...++|..++++|+++.++.+
T Consensus 79 Ga~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~~ 148 (150)
T COG3238 79 GAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRFG 148 (150)
T ss_pred hhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcccc
Confidence 66655555667777777776665554443 34444443222 23789999999999999966655544
No 85
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.11 E-value=0.019 Score=41.78 Aligned_cols=67 Identities=15% Similarity=0.124 Sum_probs=55.8
Q ss_pred HhHHHHHHHHHHHHhhhhhccccchHHHHH-HHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhh
Q 038856 31 TLPLALSYLLYMLITMEAVRGINVPMYTTL-RRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFL 97 (257)
Q Consensus 31 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~~-~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~ 97 (257)
+...-.++......+++.++..+++.+.-+ .+++=++|++.++++.+|..++++++++.+++.|+.+
T Consensus 44 y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 44 YIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 333334566677778889999999998777 5899999999999998888899999999999999875
No 86
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.03 E-value=0.36 Score=42.02 Aligned_cols=139 Identities=14% Similarity=0.100 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHHhcc--cCCCChhhHHHHHHHHHHHHHHHHHHhcCch--hhhhcCC---CCCchhHHHHHHHHH
Q 038856 113 VFIANICTAAYLAFISRIGR--SSGLSSFGLMWCNGIICTPILLFWTSFRGDL--EVTMNFP---LLFYPGFQVVMLLSC 185 (257)
Q Consensus 113 ~l~a~~~~a~~~v~~~~~~~--~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~--~~~~~~~---~~~~~~~~~~l~~~~ 185 (257)
++...+-.+......|...+ +.+..+.+..+..=+.-.+++.......+.. +...... .+.++....-+..-.
T Consensus 20 l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vPa 99 (345)
T KOG2234|consen 20 LIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVPA 99 (345)
T ss_pred HHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHHH
Confidence 33334444444444443332 2345666666666566566665544433211 1110000 011221223334444
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhh
Q 038856 186 IMAFLINYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYC 252 (257)
Q Consensus 186 ~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~ 252 (257)
.+-..-|...+.+..+.+|.++++...+|...+.+++.+++++ +++..||....+.++|+..-+..
T Consensus 100 ~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~r-kLs~~Qw~Al~lL~~Gv~~vQ~~ 165 (345)
T KOG2234|consen 100 LIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRR-KLSRLQWMALVLLFAGVALVQLP 165 (345)
T ss_pred HHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHhcc
Confidence 4444445555888999999999999999999999999999995 99999999999999999988733
No 87
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.01 E-value=0.032 Score=39.28 Aligned_cols=46 Identities=17% Similarity=0.111 Sum_probs=25.7
Q ss_pred HHHhhccchhHH-HHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHH
Q 038856 196 FLNTILNSALTQ-TICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALG 242 (257)
Q Consensus 196 ~~~i~~~~~~~~-s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li 242 (257)
..++|+.+...+ ++..-+..+...+.|.++||| ++|+.+++|+.++
T Consensus 47 ~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E-~~s~~~~~gi~lI 93 (93)
T PF00893_consen 47 SLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGE-SLSLSKWLGIGLI 93 (93)
T ss_dssp HHHH-------HHHHHHHHHHHHHHHHHHHHH---------HHHHHHH
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHhheeeC
Confidence 567888655444 666678889999999999996 9999999998875
No 88
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=95.95 E-value=0.0015 Score=54.32 Aligned_cols=71 Identities=18% Similarity=0.341 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhh
Q 038856 181 MLLSCIMAFLINYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYC 252 (257)
Q Consensus 181 l~~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~ 252 (257)
+++=|+.|+..-+..+++.++.+-..++++....|+++++++|.+++| ++|..+.+|..+++.|+++..|.
T Consensus 100 LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE-~~t~~eaL~s~itl~GVVLIvRP 170 (346)
T KOG4510|consen 100 LILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKE-PFTKFEALGSLITLLGVVLIVRP 170 (346)
T ss_pred EEeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcC-CCcHHHHHHHHHhhheEEEEecC
Confidence 344455555444556788899999999999999999999999999996 99999999999999999876543
No 89
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=94.73 E-value=0.094 Score=44.26 Aligned_cols=61 Identities=11% Similarity=0.014 Sum_probs=54.2
Q ss_pred HHHhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHH
Q 038856 29 VHTLPLALSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVG 89 (257)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~ 89 (257)
++-...|+++...+.++..|.+...++.+..+..+.++...+.+.+++||+-+++++....
T Consensus 196 ~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~ 256 (269)
T PF06800_consen 196 WKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTL 256 (269)
T ss_pred HHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHH
Confidence 4456778999999999999999999999999999999999999999999998888775433
No 90
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=93.77 E-value=0.053 Score=47.38 Aligned_cols=75 Identities=17% Similarity=0.178 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhhhh
Q 038856 179 VVMLLSCIMAFLINYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYCKL 254 (257)
Q Consensus 179 ~~l~~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~k~ 254 (257)
-.-++.|.+-+..+|..+.+++.++....+++......++..+|.++-+| ++|+..+++.++.++|+++.+..+.
T Consensus 160 k~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e-~ft~sKllav~~si~GViiVt~~~s 234 (416)
T KOG2765|consen 160 KLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVE-RFTLSKLLAVFVSIAGVIIVTMGDS 234 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcc-hhhHHHHHHHHHhhccEEEEEeccc
Confidence 34567788888889999999999999999999999999999999999986 9999999999999999988776644
No 91
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=93.02 E-value=0.049 Score=44.94 Aligned_cols=132 Identities=9% Similarity=-0.019 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchhHHHHHHHHHHHH
Q 038856 109 GYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFYPGFQVVMLLSCIMA 188 (257)
Q Consensus 109 G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 188 (257)
.+.++++-++.|+..-....|.. -+|.+...=..+ +.+.+.....+..+ ...++..++.=..+|.+-
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~G----G~p~qQ~lGtT~-GALifaiiv~~~~~--------p~~T~~~~iv~~isG~~W 69 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFG----GKPYQQTLGTTL-GALIFAIIVFLFVS--------PELTLTIFIVGFISGAFW 69 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecC----CChhHhhhhccH-HHHHHHHHHheeec--------CccchhhHHHHHHhhhHh
Confidence 45677888888887666655543 244444333333 33333333222211 123444455666777777
Q ss_pred HHHHHHHHHHhhccchhHHHHHhH-hHHHHHHHHHHHhcCCcCcchhhh----hHHHHHHHHHHHHHhhhh
Q 038856 189 FLINYYVFLNTILNSALTQTICGN-LKDLLTIGLGWLLFGGLPFDLFNI----VGQALGFLGSCFYAYCKL 254 (257)
Q Consensus 189 ~~~~~~~~~~i~~~~~~~~s~~~~-~~~i~~~~~~~~~f~e~~~t~~~~----~G~~li~~g~~~~~~~k~ 254 (257)
...+..++.+++..+..++..+.+ .+-+-+.++|++.||| -.++.+. +..++++.|+++.+++++
T Consensus 70 s~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~E-W~t~~~~IlG~iAliliviG~~lTs~~~~ 139 (288)
T COG4975 70 SFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHE-WTTPTQIILGFIALILIVIGIYLTSKQDR 139 (288)
T ss_pred hhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEec-cCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence 777777788888776666554443 5667889999999996 7776554 456788889998888876
No 92
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=92.98 E-value=0.14 Score=42.01 Aligned_cols=62 Identities=16% Similarity=0.068 Sum_probs=54.1
Q ss_pred HHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhh
Q 038856 36 LSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFL 97 (257)
Q Consensus 36 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~ 97 (257)
+.......+-.+.++|.+.....+...+.++++.+++.++++|+++..++.+..+.+.|+.+
T Consensus 160 ~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 160 LLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 34445556667889999999999999999999999999999999999999999999988754
No 93
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=90.65 E-value=0.63 Score=33.91 Aligned_cols=51 Identities=22% Similarity=0.118 Sum_probs=36.7
Q ss_pred HHhhccchhHHHH-HhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHH
Q 038856 197 LNTILNSALTQTI-CGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCF 248 (257)
Q Consensus 197 ~~i~~~~~~~~s~-~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~ 248 (257)
..+++.+-+.+.. .+.+.-+++++.++++.+ |..+...++|+++++.|+.+
T Consensus 60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge-~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGE-EVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHhcCCceeeehHHhHHHHHHHHHHHHHhcC-cccchhHHHHHHHHHcCeee
Confidence 3455544333333 356777899999988875 48899999999999999754
No 94
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=90.18 E-value=0.33 Score=39.91 Aligned_cols=72 Identities=14% Similarity=0.050 Sum_probs=60.3
Q ss_pred hHHHHHhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhh
Q 038856 26 KTLVHTLPLALSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFL 97 (257)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~ 97 (257)
..+.++...++..+..+.+-+.-..+-..=+.++...+--.|+.+.+.++++..++.+||++..+.+.|...
T Consensus 239 ~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 239 YVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA 310 (337)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence 346777888888888888888877776666667777788889999999999999999999999999988765
No 95
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=89.96 E-value=0.35 Score=41.94 Aligned_cols=105 Identities=11% Similarity=-0.047 Sum_probs=65.9
Q ss_pred HHHHHHHhcccCCC-ChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038856 123 YLAFISRIGRSSGL-SSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFYPGFQVVMLLSCIMAFLINYYVFLNTIL 201 (257)
Q Consensus 123 ~~v~~~~~~~~~~~-~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~ 201 (257)
.++..|+..++++. -|+.++......+....... ...+.. +.+...+...+.-++-.+++........+..+++
T Consensus 32 ~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~-~~l~~~----~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~ 106 (316)
T KOG1441|consen 32 VIILNKYILSKYGFPFPITLTMLHLFCGALALLVI-KVLKLV----PPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSY 106 (316)
T ss_pred eEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHH-HHhcCC----CCCccccccchHHHHHHHHHHHHHHHhcchhhhc
Confidence 45566777763332 35555555444343333322 211111 1111123334566666777666655666889999
Q ss_pred cchhHHHHHhHhHHHHHHHHHHHhcCCcCcch
Q 038856 202 NSALTQTICGNLKDLLTIGLGWLLFGGLPFDL 233 (257)
Q Consensus 202 ~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~ 233 (257)
.+-....++..+.|+++++++.++.+| +.+.
T Consensus 107 v~VsF~q~iKa~~P~~tvl~~~~~~~~-~~s~ 137 (316)
T KOG1441|consen 107 VPVSFYQTIKALMPPFTVLLSVLLLGK-TYSS 137 (316)
T ss_pred cchhHHHHHHhhcchhHHHHHHHHhCC-CCcc
Confidence 999999999999999999999999996 7765
No 96
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.47 E-value=13 Score=32.09 Aligned_cols=133 Identities=15% Similarity=0.058 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcccCCCCh-hhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCC--CCchhHHH--HHHH
Q 038856 109 GYAVVFIANICTAAYLAFISRIGRSSGLSS-FGLMWCNGIICTPILLFWTSFRGDLEVTMNFPL--LFYPGFQV--VMLL 183 (257)
Q Consensus 109 G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~-~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~--~l~~ 183 (257)
...-++..+++...-.+..|.....++.+. ..++.+|++.+.+.....-.. + ..+++. +...+.|. .+++
T Consensus 13 ~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~-~----lv~~~~l~~~~~kk~~P~~~lf 87 (314)
T KOG1444|consen 13 PLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRL-G----LVNFRPLDLRTAKKWFPVSLLF 87 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHh-c----eeecCCcChHHHHHHccHHHHH
Confidence 456667777777777777787777666653 345568888777666544321 1 112221 11222232 2333
Q ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhh
Q 038856 184 SCIMAFLINYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYC 252 (257)
Q Consensus 184 ~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~ 252 (257)
.+.. ++....+|+.+-..+.++....++.+.+...+++| .+++...+.....+.+|...+...
T Consensus 88 ~~~i-----~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~-~~~~~~v~~Sv~~m~~~s~~~~~~ 150 (314)
T KOG1444|consen 88 VGML-----FTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFG-KRPSNKVWASVFAMIIGSVAAAFT 150 (314)
T ss_pred HHHH-----HHccccccccCchHHHHHhhchHHHHHHhHHhhcC-cCchhhHHHHHHHHHHHHHhhccc
Confidence 3322 33456789999999999999999999999999999 599999999999999998876543
No 97
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=88.71 E-value=1.3 Score=36.29 Aligned_cols=75 Identities=9% Similarity=0.048 Sum_probs=61.5
Q ss_pred cChhHHHHHhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhh
Q 038856 23 VPLKTLVHTLPLALSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFL 97 (257)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~ 97 (257)
++.+.+...++.|++-.+..++.-+.++.++.+++.+...+.-...++.+.+++++..+...+.++++++...++
T Consensus 219 l~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~i 293 (309)
T COG5070 219 LSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAI 293 (309)
T ss_pred CChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHH
Confidence 344445667788888888899999999999999999999999999999999999998888888887777544433
No 98
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=88.49 E-value=0.23 Score=39.69 Aligned_cols=62 Identities=23% Similarity=0.235 Sum_probs=53.6
Q ss_pred HHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhhhh
Q 038856 192 NYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYCKL 254 (257)
Q Consensus 192 ~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~k~ 254 (257)
+|--..++++.+|+.++-+..-+..+.-+++++++|| ++.-..++..++.+.|+++.++.++
T Consensus 67 NY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D-~~~~~kIlaailAI~GiVmiay~DN 128 (290)
T KOG4314|consen 67 NYLYLLALKKISASDASAIFACNAAFVFILAIIVLGD-RFMGFKILAAILAIGGIVMIAYADN 128 (290)
T ss_pred CcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhcc-chhhhhHHHHHHHhCcEEEEEeccc
Confidence 5555678999999999999999999999999999997 9999999999998888887766543
No 99
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=87.45 E-value=1.7 Score=36.52 Aligned_cols=133 Identities=19% Similarity=0.179 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchhHHHHHHHHHHHH
Q 038856 109 GYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFYPGFQVVMLLSCIMA 188 (257)
Q Consensus 109 G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 188 (257)
|++.+++|+++++...+=.||.. .-|++-.+.+++....+.......+.+. +.. . ..-++.|.+-
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~---~gDg~~fQw~~~~~i~~~g~~v~~~~~~-------p~f-~----p~amlgG~lW 65 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFD---TGDGFFFQWVMCSGIFLVGLVVNLILGF-------PPF-Y----PWAMLGGALW 65 (254)
T ss_pred CchhHHHHHHHhcccceeeEecc---CCCcHHHHHHHHHHHHHHHHHHHHhcCC-------Ccc-e----eHHHhhhhhh
Confidence 56778888888888888777653 2466555555544333333333333221 111 1 1122333332
Q ss_pred HHHHHHHHHHhhccch-hHHHHHhHhHHHHHHHHHHH-hcCCc--C--cchhhhhHHHHHHHHHHHHHhhhhcC
Q 038856 189 FLINYYVFLNTILNSA-LTQTICGNLKDLLTIGLGWL-LFGGL--P--FDLFNIVGQALGFLGSCFYAYCKLQG 256 (257)
Q Consensus 189 ~~~~~~~~~~i~~~~~-~~~s~~~~~~~i~~~~~~~~-~f~e~--~--~t~~~~~G~~li~~g~~~~~~~k~~~ 256 (257)
...|....-.+|..+- .-..+-+..+-+.+...|-+ +||++ . -.+.+++|.+++++|..+|...|..+
T Consensus 66 ~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 66 ATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred hcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 2223333333444332 22223333444455554433 55431 1 35889999999999999999877543
No 100
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=87.31 E-value=2.6 Score=31.93 Aligned_cols=64 Identities=14% Similarity=0.246 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhhhhhccccchHHHHHH-HHHHHHHHHHHHH----HhCcccCcchhHHHHHHHhhhhh
Q 038856 34 LALSYLLYMLITMEAVRGINVPMYTTLR-RTTVAFTMIVEYL----LTGQKHSLPVVGSVGIILLGAFL 97 (257)
Q Consensus 34 ~~~~~~~~~~~~~~al~~~~~~~~~~~~-~~~pv~~~i~~~l----~~~e~~~~~~~~~~~~~~~Gv~~ 97 (257)
-|++......+...+...+.++....+. ..+-+..++.+.+ .-|+++++.+.+++.++++|+.+
T Consensus 70 GG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 70 GGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred cHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 5677788888889999998888766554 4566667777775 35688999999999999999863
No 101
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=84.17 E-value=27 Score=30.17 Aligned_cols=128 Identities=16% Similarity=0.092 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHhcc-cCC------CChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchhHHHHHHHHHHHHHHH
Q 038856 119 CTAAYLAFISRIGR-SSG------LSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFYPGFQVVMLLSCIMAFLI 191 (257)
Q Consensus 119 ~~a~~~v~~~~~~~-~~~------~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 191 (257)
.+-.+.++++|+.. ++. -++.-+.+.|.+.+.+....+.. ... -+. .....|.---+.++....-
T Consensus 25 t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~--~~k-----~~~-~~~apl~~y~~is~tn~~s 96 (327)
T KOG1581|consen 25 TFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLK--WWK-----KEL-SGVAPLYKYSLISFTNTLS 96 (327)
T ss_pred HHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHh--ccc-----ccC-CCCCchhHHhHHHHHhhcc
Confidence 34446677777662 221 13444566777776665533322 111 111 1111233444555555566
Q ss_pred HHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhhhhc
Q 038856 192 NYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYCKLQ 255 (257)
Q Consensus 192 ~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~k~~ 255 (257)
..+.+.++|+.|=.+..+.-.-|-+..++++.++.+. +.++...+=..++-.|+.++...+..
T Consensus 97 ~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~-ky~~~eYl~~~LIs~GvsiF~l~~~s 159 (327)
T KOG1581|consen 97 SWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGR-KYSSFEYLVAFLISLGVSIFSLFPNS 159 (327)
T ss_pred hHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcC-ccCcHHHHHHHHHHhheeeEEEecCC
Confidence 6677889999999999999999999999999999995 99999999999999998888776543
No 102
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=83.75 E-value=33 Score=30.89 Aligned_cols=84 Identities=18% Similarity=0.137 Sum_probs=32.7
Q ss_pred HHHHHHHHHhCcccCcchhHHHHHHHhhhhhhcccccccchh-hHHHHHHH-HHHHHHHHHHHHHhcccCCCChhhHHHH
Q 038856 67 FTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGARDLSFDAY-GYAVVFIA-NICTAAYLAFISRIGRSSGLSSFGLMWC 144 (257)
Q Consensus 67 ~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~~~~~~~~~-G~~~~l~a-~~~~a~~~v~~~~~~~~~~~~~~~~~~~ 144 (257)
...+.+++ .++|++..... --.++|.+-...+....++. ..+.++++ .+++-.+..+.||..-+-..+...+=..
T Consensus 237 ~~~~~~~~-~~gk~~~~~~~--nG~laGlVaita~~~~v~p~~A~~iG~iag~i~~~~~~~l~~~~~iDD~~~~~~vHg~ 313 (399)
T PF00909_consen 237 TWLLISYL-LSGKWSMVGIC--NGALAGLVAITAGAGYVTPWGALLIGAIAGLISYFGVSWLLKRLKIDDPVGAFAVHGV 313 (399)
T ss_dssp HHHHHHHH-HCSS--HHHHH--HHHHHHHHHHTTTTTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HTTGHHHHCHH
T ss_pred HHHHhhhc-cccccchhhhh--hhhhhhhhheecccCCCcHHHHHHhhhhHhhhhhhheecccceeEeccccceEeeeec
Confidence 33333433 34555544332 23344554443333333333 45555655 3444444434444432212333333333
Q ss_pred HHHHHHHHH
Q 038856 145 NGIICTPIL 153 (257)
Q Consensus 145 ~~l~~~~~l 153 (257)
..+.+.+..
T Consensus 314 ~Gi~G~i~~ 322 (399)
T PF00909_consen 314 GGIWGTILT 322 (399)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 344444333
No 103
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.05 E-value=0.77 Score=39.51 Aligned_cols=116 Identities=19% Similarity=0.200 Sum_probs=76.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCCchhHHHHHHHH
Q 038856 105 FDAYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLFYPGFQVVMLLS 184 (257)
Q Consensus 105 ~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 184 (257)
.+..|.++++.+.+..+...++.||-+++..... .--+| ..++...++.+|..++..
T Consensus 18 d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~-------------------~ra~~----gg~~yl~~~~Ww~G~ltm 74 (335)
T KOG2922|consen 18 DNIIGLVLAISSSIFIGSSFILKKKGLKRAGASG-------------------LRAGE----GGYGYLKEPLWWAGMLTM 74 (335)
T ss_pred CceeeeeehhhccEEEeeehhhhHHHHHHHhhhc-------------------ccccC----CCcchhhhHHHHHHHHHH
Confidence 3457888888888888888877776554321100 00011 111222334445555444
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHH
Q 038856 185 CIMAFLINYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCF 248 (257)
Q Consensus 185 ~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~ 248 (257)
++. =..| |.+....+++..+.++.+.-+.+++++..+++| ++++...+|++++++|...
T Consensus 75 ~vG-ei~N---FaAYaFAPasLVtPLGAlsvi~saila~~~L~E-kl~~~g~lGc~l~v~Gst~ 133 (335)
T KOG2922|consen 75 IVG-EIAN---FAAYAFAPASLVTPLGALSVIISAILASFFLKE-KLNLLGILGCVLCVVGSTT 133 (335)
T ss_pred HHH-hHhh---HHHHhhchHhhhccchhHHHHHHHHHHHHHHHH-HHHHhhhhheeEEecccEE
Confidence 443 2223 445566678888888889999999999999985 9999999999999998753
No 104
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=79.98 E-value=41 Score=29.52 Aligned_cols=140 Identities=14% Similarity=0.098 Sum_probs=69.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHHH-HHHHHHHHHHHHHHH--hcCchhhhhcCCCCCchhHHHHHHH
Q 038856 107 AYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLMW-CNGIICTPILLFWTS--FRGDLEVTMNFPLLFYPGFQVVMLL 183 (257)
Q Consensus 107 ~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~-~~~l~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~ 183 (257)
..|.++..+++++.+-+.+-.||..+ -+|+..- .+.+++.++.++..- ...++.+.. ...+...+....+
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkvk~----WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~---~~~~~~~l~~~~l 78 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKVKG----WSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIY---SATPASTLFWTFL 78 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhcCC----ccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH---HhCChhHHHHHHH
Confidence 36999999999999998888776532 3444432 255666655543221 122222211 1112222233333
Q ss_pred HHHHHHHHHHHHHHHhhccc-hhHHHHHhHhHHHHHHHHHHHhcCC------cCcchhhhhHHHHHHHHHHHHHhhh
Q 038856 184 SCIMAFLINYYVFLNTILNS-ALTQTICGNLKDLLTIGLGWLLFGG------LPFDLFNIVGQALGFLGSCFYAYCK 253 (257)
Q Consensus 184 ~~~~~~~~~~~~~~~i~~~~-~~~~s~~~~~~~i~~~~~~~~~f~e------~~~t~~~~~G~~li~~g~~~~~~~k 253 (257)
.|++--..+...-..+|+.+ +...++.--+-.++..++-.++.|+ .+-....++|..++++|+.+..+.-
T Consensus 79 ~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG 155 (344)
T PF06379_consen 79 FGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAG 155 (344)
T ss_pred HHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHH
Confidence 33321111111112344432 2333333333334444443333221 1234578999999999999888663
No 105
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=78.05 E-value=3 Score=29.86 Aligned_cols=44 Identities=14% Similarity=0.144 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhcc
Q 038856 57 YTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGA 100 (257)
Q Consensus 57 ~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~ 100 (257)
+..-.-...+...+..+.+-|+||++.++++..++++|+.+...
T Consensus 60 YAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 60 YAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILF 103 (107)
T ss_pred HHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEe
Confidence 34444566788889999999999999999999999999988644
No 106
>PRK02237 hypothetical protein; Provisional
Probab=77.62 E-value=3.8 Score=29.44 Aligned_cols=44 Identities=16% Similarity=0.106 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhcc
Q 038856 57 YTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGA 100 (257)
Q Consensus 57 ~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~ 100 (257)
+..-.....+...+..+.+-|+||++.++.+..++++|+.+...
T Consensus 62 YAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 62 YAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred HHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhee
Confidence 33334456677778999999999999999999999999987643
No 107
>PRK02237 hypothetical protein; Provisional
Probab=77.56 E-value=6.1 Score=28.41 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=38.6
Q ss_pred HHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhhhh
Q 038856 206 TQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYCKL 254 (257)
Q Consensus 206 ~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~k~ 254 (257)
.++..+-+-.+.+.+.++.+-|. +++...++|..++++|+.+..+..|
T Consensus 61 vYAAYGGvyI~~Sl~W~w~vdg~-~Pd~~D~iGa~v~L~G~~iI~~~pR 108 (109)
T PRK02237 61 VYAAYGGVYVAGSLLWLWVVDGV-RPDRWDWIGAAICLVGMAVIMYAPR 108 (109)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCc-CCChhHHHhHHHHHHhHHHheecCC
Confidence 34455666678888999999995 9999999999999999987765443
No 108
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=74.91 E-value=21 Score=30.51 Aligned_cols=55 Identities=11% Similarity=0.029 Sum_probs=47.4
Q ss_pred HHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHh
Q 038856 196 FLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAY 251 (257)
Q Consensus 196 ~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~ 251 (257)
+.++-.++++.+++.--...+++-+++.-+++. +++..||+|+.-+..|.+....
T Consensus 104 ~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~-ti~~~qWl~i~fv~lGlviVg~ 158 (372)
T KOG3912|consen 104 YVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNR-TITGRQWLGILFVSLGLVIVGS 158 (372)
T ss_pred HHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhc-ccchhhHHHHHHHHhhhheeee
Confidence 556777888999998888899999999999984 9999999999999999875443
No 109
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=72.94 E-value=7.1 Score=27.99 Aligned_cols=46 Identities=20% Similarity=0.385 Sum_probs=38.0
Q ss_pred HHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhhh
Q 038856 207 QTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYCK 253 (257)
Q Consensus 207 ~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~k 253 (257)
++..+-+-.+.+.+.++.+-|+ +++...++|..++++|+.+..+..
T Consensus 60 YAAYGGvfI~~Sl~W~w~vdg~-~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 60 YAAYGGVFIVASLLWGWLVDGV-RPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred HHHhhhhHHHHHHHHHhhhcCc-CCChHHHHhHHHHHHhHHheEecC
Confidence 4455666678889999999995 999999999999999998766544
No 110
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=69.89 E-value=19 Score=25.76 Aligned_cols=60 Identities=10% Similarity=0.094 Sum_probs=38.1
Q ss_pred HHHHHHHhhhhhccccchHHHHHHH-HHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhh
Q 038856 38 YLLYMLITMEAVRGINVPMYTTLRR-TTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFL 97 (257)
Q Consensus 38 ~~~~~~~~~~al~~~~~~~~~~~~~-~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~ 97 (257)
|+...-.+-.+.+..+.+.-.++.= .+-..-+.++.+++||++++....+.+....++.+
T Consensus 45 Y~l~VPANRiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 45 YCLQVPANRIGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHhCcchhhhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 4444444445666555554333332 23333456778889999999999998888777654
No 111
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=66.43 E-value=1.9 Score=36.46 Aligned_cols=94 Identities=11% Similarity=0.077 Sum_probs=0.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHH-hCcc-cCcchhHHHHHHHhhhhhhcccc--cccchhhHHHHHHHHHHHHHHHHHH
Q 038856 52 INVPMYTTLRRTTVAFTMIVEYLL-TGQK-HSLPVVGSVGIILLGAFLAGARD--LSFDAYGYAVVFIANICTAAYLAFI 127 (257)
Q Consensus 52 ~~~~~~~~~~~~~pv~~~i~~~l~-~~e~-~~~~~~~~~~~~~~Gv~~~~~~~--~~~~~~G~~~~l~a~~~~a~~~v~~ 127 (257)
.+-+-.+++.+...+++.|.-.++ +|+| +-+.-.++++++++-..+...-. .|.=..|+++.+++....-.-..+
T Consensus 47 ~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLtGQ~LF~Gi~~l~l~~lLaL~vW~Y- 125 (381)
T PF05297_consen 47 LTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLTGQTLFVGIVILFLCCLLALGVWFY- 125 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHH-
Confidence 334444555555555554444433 4544 33444455544444333322222 233346776655554322222222
Q ss_pred HHhcccCCCChhhHHHHHH
Q 038856 128 SRIGRSSGLSSFGLMWCNG 146 (257)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~ 146 (257)
-.+.+++..+-|+++.+..
T Consensus 126 m~lLr~~GAs~WtiLaFcL 144 (381)
T PF05297_consen 126 MWLLRELGASFWTILAFCL 144 (381)
T ss_dssp -------------------
T ss_pred HHHHHHhhhHHHHHHHHHH
Confidence 2355677888888877654
No 112
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=66.23 E-value=6.7 Score=27.95 Aligned_cols=40 Identities=13% Similarity=0.022 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhcc
Q 038856 61 RRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGA 100 (257)
Q Consensus 61 ~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~ 100 (257)
.-...+...+..++.-|++|++.++.+..++++|+.++..
T Consensus 65 GGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~ 104 (109)
T COG1742 65 GGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILF 104 (109)
T ss_pred cchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEe
Confidence 3455677788889999999999999999999999877543
No 113
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.57 E-value=21 Score=25.25 Aligned_cols=40 Identities=10% Similarity=0.143 Sum_probs=30.0
Q ss_pred HHhHhHHHHH----HHHHHHhcCCcCcchhhhhHHHHHHHHHHHH
Q 038856 209 ICGNLKDLLT----IGLGWLLFGGLPFDLFNIVGQALGFLGSCFY 249 (257)
Q Consensus 209 ~~~~~~~i~~----~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~ 249 (257)
.+..++.+++ +.+|.+.++| |+.+..+.|..+++.|+.+.
T Consensus 70 QLK~mQEVItL~iFv~Fsvfyl~e-pl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 70 QLKTMQEVITLAIFVPFSVFYLKE-PLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHHHHh
Confidence 3344555544 5578899996 99999999999998887654
No 114
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=63.42 E-value=17 Score=26.12 Aligned_cols=67 Identities=16% Similarity=0.105 Sum_probs=48.9
Q ss_pred HhHHHHHHHHHHHHhhhhhccccchHHH-HHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhh
Q 038856 31 TLPLALSYLLYMLITMEAVRGINVPMYT-TLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFL 97 (257)
Q Consensus 31 ~~~~~~~~~~~~~~~~~al~~~~~~~~~-~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~ 97 (257)
+...-.+.-....+++.-++..+.+.+. +-.+++-.|+.+.+.....|...++.+++..+.+.|+.+
T Consensus 55 Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~L 122 (125)
T KOG4831|consen 55 YLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWL 122 (125)
T ss_pred HHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhh
Confidence 3333444455667777888888877654 445678889999999876666778888999999999865
No 115
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=56.48 E-value=15 Score=25.18 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=23.1
Q ss_pred CcchhhhhHHHHHHHHHHHHHhhhhcC
Q 038856 230 PFDLFNIVGQALGFLGSCFYAYCKLQG 256 (257)
Q Consensus 230 ~~t~~~~~G~~li~~g~~~~~~~k~~~ 256 (257)
.+++..++|.++++.|..+|..++.++
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~~P 30 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFFRP 30 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 478999999999999999998776554
No 116
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=55.99 E-value=2.6 Score=35.35 Aligned_cols=65 Identities=15% Similarity=0.267 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHH
Q 038856 184 SCIMAFLINYYVFLNTILNSALTQTICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFY 249 (257)
Q Consensus 184 ~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~ 249 (257)
.++.-.-.||....+.++++-+..+.+..-..+...+++|++++ .+.-+.++.|..+++.|+++.
T Consensus 84 la~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLk-trYrlmki~gV~iCi~Gvvmv 148 (336)
T KOG2766|consen 84 LAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLK-TRYRLMKISGVVICIVGVVMV 148 (336)
T ss_pred eeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHH-HHHhhheeeeEEeEecceEEE
Confidence 33333444666567788889999999999999999999999999 599999999999999987643
No 117
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=55.30 E-value=13 Score=20.31 Aligned_cols=15 Identities=27% Similarity=0.126 Sum_probs=8.9
Q ss_pred CcchhhhhHHHHHHH
Q 038856 230 PFDLFNIVGQALGFL 244 (257)
Q Consensus 230 ~~t~~~~~G~~li~~ 244 (257)
.-++..++|.+++..
T Consensus 9 ~~~~~~~~G~~l~~~ 23 (34)
T TIGR01167 9 GNSLLLLLGLLLLGL 23 (34)
T ss_pred ccHHHHHHHHHHHHH
Confidence 445667777744444
No 118
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=46.79 E-value=2.2e+02 Score=25.74 Aligned_cols=86 Identities=13% Similarity=0.103 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhccc-ccccchhhHHHHHHHHHHHHHHHHHHHHhcccCCCChhhHH
Q 038856 64 TVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGAR-DLSFDAYGYAVVFIANICTAAYLAFISRIGRSSGLSSFGLM 142 (257)
Q Consensus 64 ~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~~-~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~ 142 (257)
.-+..++.+++. ++|++.... +--+++|.+-.... +.-..+...++++++....-...-+.||+.-+-..+.+.+=
T Consensus 253 g~l~~~~~~~~~-~gk~~~~~~--~nG~LAGLVaITa~~~~v~p~~A~iiG~iag~v~~~~~~~~~~~~iDD~~~~~~vH 329 (404)
T TIGR03644 253 GAIAALLLTKLL-FGKADLTMV--LNGALAGLVAITAEPLTPSPLAATLIGAVGGVIVVFSIVLLDKLKIDDPVGAISVH 329 (404)
T ss_pred HHHHHHHHHHHH-cCCCCHHHH--HHHHHhhhhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCchHhh
Confidence 334444455543 345554442 22335555544333 33233344556665554433333334543322233444443
Q ss_pred HHHHHHHHHH
Q 038856 143 WCNGIICTPI 152 (257)
Q Consensus 143 ~~~~l~~~~~ 152 (257)
....+.+.+.
T Consensus 330 g~~Gi~G~i~ 339 (404)
T TIGR03644 330 GVAGIWGTLV 339 (404)
T ss_pred hHHHHHHHHH
Confidence 3444444433
No 119
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.21 E-value=7.2 Score=33.12 Aligned_cols=109 Identities=18% Similarity=0.196 Sum_probs=62.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcCchhhhhcCCCCC-chhHHHHH-HHHHHHHHHHHHHHHHHhhccchhHHHHHhHhHH
Q 038856 138 SFGLMWCNGIICTPILLFWTSFRGDLEVTMNFPLLF-YPGFQVVM-LLSCIMAFLINYYVFLNTILNSALTQTICGNLKD 215 (257)
Q Consensus 138 ~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l-~~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~ 215 (257)
|.-+..||.+....++.......-.......+++.. +...-.-+ =++-+. ...--+-+.+++..+..-+.+-..+..
T Consensus 61 plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVf-i~mI~fnnlcL~yVgVaFYyvgRsLtt 139 (347)
T KOG1442|consen 61 PLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVF-ILMISFNNLCLKYVGVAFYYVGRSLTT 139 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhhee-eeehhccceehhhcceEEEEeccchhh
Confidence 556677888887777776654433322223344321 11110001 111111 111111256777777777767777888
Q ss_pred HHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHH
Q 038856 216 LLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCF 248 (257)
Q Consensus 216 i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~ 248 (257)
++++++++.++++ +=+..-..++.+++.|..+
T Consensus 140 vFtVlLtyvllkq-kTs~~~~~~C~lIi~GF~l 171 (347)
T KOG1442|consen 140 VFTVLLTYVLLKQ-KTSFFALGCCLLIILGFGL 171 (347)
T ss_pred hHHHHhHHhhccc-ccccccceeehhheehhee
Confidence 9999999999986 7677777777777776543
No 120
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=44.65 E-value=1.4e+02 Score=24.57 Aligned_cols=72 Identities=15% Similarity=0.275 Sum_probs=49.8
Q ss_pred HHHHHhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHH---HHHHhCcccCcchhHHHHHHHhhhhhh
Q 038856 27 TLVHTLPLALSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIV---EYLLTGQKHSLPVVGSVGIILLGAFLA 98 (257)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~---~~l~~~e~~~~~~~~~~~~~~~Gv~~~ 98 (257)
.+....||-+|+......-....+..+.+...+...+..+|.... +.+..+.+.+....++-.+.+.|...+
T Consensus 101 ~lal~~PCPvCl~Ai~~S~~l~a~~~~~s~~~ig~~~g~if~i~il~ss~i~r~~~~~~p~~LG~~Mi~~GlyfL 175 (224)
T PF09930_consen 101 FLALSLPCPVCLTAIFFSIMLLAPSIGLSGWEIGLVLGLIFFILILLSSFIFRRLKKPYPIILGNFMIFLGLYFL 175 (224)
T ss_pred hhhhhcCchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 356778888898888777778888888888887777666655433 333344455566677777777777654
No 121
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=44.55 E-value=1.2e+02 Score=21.86 Aligned_cols=28 Identities=7% Similarity=-0.002 Sum_probs=24.2
Q ss_pred HHHHHHhcCCcCcchhhhhHHHHHHHHHH
Q 038856 219 IGLGWLLFGGLPFDLFNIVGQALGFLGSC 247 (257)
Q Consensus 219 ~~~~~~~f~e~~~t~~~~~G~~li~~g~~ 247 (257)
+.++++.++| ++++....|..+++.+++
T Consensus 77 ~~Fsv~~l~E-~l~~n~l~af~~i~~av~ 104 (108)
T PF04342_consen 77 APFSVFYLGE-PLKWNYLWAFLCILGAVY 104 (108)
T ss_pred HHHHHHHhCC-CccHHHHHHHHHHHHhhh
Confidence 5678899996 999999999999987764
No 122
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=43.25 E-value=2.6e+02 Score=25.53 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=16.8
Q ss_pred hhhhHHHHHHHHHHHHHhhhhcC
Q 038856 234 FNIVGQALGFLGSCFYAYCKLQG 256 (257)
Q Consensus 234 ~~~~G~~li~~g~~~~~~~k~~~ 256 (257)
....|.++...|..+|.+.++++
T Consensus 417 ~~~~~~~~~~~g~~~y~~~~~~~ 439 (473)
T TIGR00905 417 YLLLGFILYAPGIIFYGRARKER 439 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45568888889988887766544
No 123
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=42.60 E-value=2.6e+02 Score=25.33 Aligned_cols=89 Identities=21% Similarity=0.242 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhcccccccchhh-HHHHHHHH-HHHHHHHHHHHHhcccCCCChhh
Q 038856 63 TTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGARDLSFDAYG-YAVVFIAN-ICTAAYLAFISRIGRSSGLSSFG 140 (257)
Q Consensus 63 ~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~~~~~~~~~G-~~~~l~a~-~~~a~~~v~~~~~~~~~~~~~~~ 140 (257)
..-+--++.+++. ++|++..- .+--+++|.+-..-.-.-.++.| .+.++++. +|+-....+.||+.-+-..|.+.
T Consensus 239 ~g~l~w~~~e~~~-~~Kp~~lg--~~sG~vAGLVaITpaag~V~p~~A~iiGii~g~i~~~a~~~lk~~l~~DD~ld~f~ 315 (409)
T COG0004 239 AGALGWMLIEWLR-NGKPSLLG--AASGAVAGLVAITPAAGFVSPWGALIIGLIAGVICYFAVKLLKKKLGVDDALDVFG 315 (409)
T ss_pred HHHHHHHHHHHHH-cCCCchhh--hhhHHHhHHHhcCCcccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccee
Confidence 3334445555555 55555432 23344566655433322334443 44544444 56665555544443222345554
Q ss_pred HHHHHHHHHHHHHH
Q 038856 141 LMWCNGIICTPILL 154 (257)
Q Consensus 141 ~~~~~~l~~~~~l~ 154 (257)
.=....+.+.+...
T Consensus 316 vHGvgGi~G~i~~G 329 (409)
T COG0004 316 VHGVGGIVGAILTG 329 (409)
T ss_pred ccchhhHHHHHHHH
Confidence 44444444444443
No 124
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=39.88 E-value=1.3e+02 Score=26.27 Aligned_cols=65 Identities=14% Similarity=0.081 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhh
Q 038856 34 LALSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLA 98 (257)
Q Consensus 34 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~ 98 (257)
.|.+-.+.-.+.+.-++.+++=+.++..-..-+.+.+++..+++++++-..|+++.++..|+..-
T Consensus 249 ~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 249 GGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 33333344444455555666655556666666777888888888888888888888888888764
No 125
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=38.05 E-value=34 Score=20.71 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHhhhhcC
Q 038856 236 IVGQALGFLGSCFYAYCKLQG 256 (257)
Q Consensus 236 ~~G~~li~~g~~~~~~~k~~~ 256 (257)
.+-+.++++|+++|.+.++++
T Consensus 16 l~~~~~~Figiv~wa~~p~~k 36 (48)
T cd01324 16 LLYLALFFLGVVVWAFRPGRK 36 (48)
T ss_pred HHHHHHHHHHHHHHHhCCCcc
Confidence 334567889999999887654
No 126
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=33.67 E-value=3.1e+02 Score=23.59 Aligned_cols=56 Identities=18% Similarity=0.188 Sum_probs=42.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhcccccccch
Q 038856 52 INVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGARDLSFDA 107 (257)
Q Consensus 52 ~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~~~~~~~~ 107 (257)
-.+..+..+...--..|.+++++++.|.++.--.-+.+++..|+.+-..++.+-.+
T Consensus 284 fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~nk~~ 339 (367)
T KOG1582|consen 284 FGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKRNKIP 339 (367)
T ss_pred hchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCCCCCc
Confidence 34455555666666778899999999999988888899999999987777654443
No 127
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.57 E-value=76 Score=22.49 Aligned_cols=30 Identities=7% Similarity=0.025 Sum_probs=23.3
Q ss_pred HHHHHHHhCcccCcchhHHHHHHHhhhhhh
Q 038856 69 MIVEYLLTGQKHSLPVVGSVGIILLGAFLA 98 (257)
Q Consensus 69 ~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~ 98 (257)
..++.+++||.+++..+.+.+++..|+.++
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 346777889999999988888777777653
No 128
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=31.65 E-value=43 Score=20.15 Aligned_cols=21 Identities=24% Similarity=0.233 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHhhhhcC
Q 038856 236 IVGQALGFLGSCFYAYCKLQG 256 (257)
Q Consensus 236 ~~G~~li~~g~~~~~~~k~~~ 256 (257)
.+-..++++|++++.+.++++
T Consensus 15 ~v~~~~~F~gi~~w~~~~~~k 35 (49)
T PF05545_consen 15 TVLFFVFFIGIVIWAYRPRNK 35 (49)
T ss_pred HHHHHHHHHHHHHHHHcccch
Confidence 344556677888888876643
No 129
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=31.24 E-value=42 Score=24.02 Aligned_cols=45 Identities=16% Similarity=0.313 Sum_probs=35.1
Q ss_pred HHhHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhhhh
Q 038856 209 ICGNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYCKL 254 (257)
Q Consensus 209 ~~~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~k~ 254 (257)
-.+-+-.+.+.+..+.+=| ..++...+.|..++++|+.+..+..+
T Consensus 63 AYGGvyI~~sL~W~~~Vdg-~~pdr~D~~Ga~icl~G~~vil~~pR 107 (109)
T COG1742 63 AYGGVYIAASLAWLWVVDG-VRPDRYDWIGAAICLAGVAVILFGPR 107 (109)
T ss_pred HhcchHHHHHHHHHHHHcC-cCCcHHHhhhHHHHHhceeeeEeCCC
Confidence 3455666788888888888 49999999999999999776655433
No 130
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=30.43 E-value=3.8e+02 Score=23.66 Aligned_cols=105 Identities=18% Similarity=0.264 Sum_probs=69.2
Q ss_pred ChhHHHHHhHHHHHHHHHHHHhhhhhccccchHHH-HHHHHHHHHHHHHHHHHhC-------cccCcchhHHHHHHHhhh
Q 038856 24 PLKTLVHTLPLALSYLLYMLITMEAVRGINVPMYT-TLRRTTVAFTMIVEYLLTG-------QKHSLPVVGSVGIILLGA 95 (257)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-~~~~~~pv~~~i~~~l~~~-------e~~~~~~~~~~~~~~~Gv 95 (257)
|.+++......|++.......+-.+++|+.++..+ +..-++.++-.++-.++.+ ++-.....++++++++|+
T Consensus 69 ~~~~l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGI 148 (344)
T PF06379_consen 69 PASTLFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGI 148 (344)
T ss_pred ChhHHHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHH
Confidence 44566666777888888888888999998877633 2233344444444444433 222356778999999999
Q ss_pred hhhccc----c--c-----ccc-hhhHHHHHHHHHHHHHHHHHHH
Q 038856 96 FLAGAR----D--L-----SFD-AYGYAVVFIANICTAAYLAFIS 128 (257)
Q Consensus 96 ~~~~~~----~--~-----~~~-~~G~~~~l~a~~~~a~~~v~~~ 128 (257)
.+.... | . ++| ..|..+++.|-+..|..+.-..
T Consensus 149 ai~g~AG~~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ 193 (344)
T PF06379_consen 149 AICGKAGSMKEKELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLD 193 (344)
T ss_pred HHHhHHHHhhhhhhccchhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 886321 1 1 222 3699999999998888887554
No 131
>PF15055 DUF4536: Domain of unknown function (DUF4536)
Probab=27.53 E-value=47 Score=20.08 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHhhhhcCC
Q 038856 236 IVGQALGFLGSCFYAYCKLQGK 257 (257)
Q Consensus 236 ~~G~~li~~g~~~~~~~k~~~~ 257 (257)
+-|..++=+|.++|...|++.|
T Consensus 8 vSG~GLig~G~Yv~~~ark~~k 29 (47)
T PF15055_consen 8 VSGGGLIGAGAYVYAQARKRMK 29 (47)
T ss_pred ecccchHHHHHHHHHHHhhccc
Confidence 3467777889999988887643
No 132
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.45 E-value=2.1e+02 Score=22.02 Aligned_cols=64 Identities=11% Similarity=0.184 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhhhhccccchH-HHHHHHHHHHHHHHHHHHHh----CcccCcchhHHHHHHHhhhhhh
Q 038856 35 ALSYLLYMLITMEAVRGINVPM-YTTLRRTTVAFTMIVEYLLT----GQKHSLPVVGSVGIILLGAFLA 98 (257)
Q Consensus 35 ~~~~~~~~~~~~~al~~~~~~~-~~~~~~~~pv~~~i~~~l~~----~e~~~~~~~~~~~~~~~Gv~~~ 98 (257)
|.+.......+......+.+++ ..+..+.+-+..++++.+=. ++++++.+++++++.++|+.+.
T Consensus 76 G~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 76 GLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred cchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 3444444555555555555444 45556666677777776632 4789999999999999996553
No 133
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=26.81 E-value=4.7e+02 Score=23.52 Aligned_cols=17 Identities=18% Similarity=0.086 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHhhhh
Q 038856 238 GQALGFLGSCFYAYCKL 254 (257)
Q Consensus 238 G~~li~~g~~~~~~~k~ 254 (257)
+..+...+...|.++++
T Consensus 412 ~~~~~~~~~~~~~~~~~ 428 (435)
T PRK10435 412 TFIVSLIILMFYARKMH 428 (435)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34444555556665553
No 134
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=26.18 E-value=5.3e+02 Score=23.90 Aligned_cols=75 Identities=11% Similarity=0.172 Sum_probs=39.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHh----C------cccCcchhHHHHHHHhhhhhhcccccccc---hhhHHHHHHHH
Q 038856 51 GINVPMYTTLRRTTVAFTMIVEYLLT----G------QKHSLPVVGSVGIILLGAFLAGARDLSFD---AYGYAVVFIAN 117 (257)
Q Consensus 51 ~~~~~~~~~~~~~~pv~~~i~~~l~~----~------e~~~~~~~~~~~~~~~Gv~~~~~~~~~~~---~~G~~~~l~a~ 117 (257)
-+|++.+..+....=++-++.+.+.. | |+..+.-+.++-.+++.+.....+|.+.+ .+.++.-++-.
T Consensus 44 Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~ 123 (467)
T COG2211 44 GLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLG 123 (467)
T ss_pred CCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHH
Confidence 36777777777777777777776651 2 22223333444455555544445554322 34444444444
Q ss_pred HHHHHHHH
Q 038856 118 ICTAAYLA 125 (257)
Q Consensus 118 ~~~a~~~v 125 (257)
++|+.-++
T Consensus 124 l~YT~vni 131 (467)
T COG2211 124 LGYTLVNI 131 (467)
T ss_pred HHHHheeC
Confidence 66655443
No 135
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=26.05 E-value=5e+02 Score=23.52 Aligned_cols=26 Identities=12% Similarity=0.087 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhHH
Q 038856 182 LLSCIMAFLINYYVFLNTILNSALTQ 207 (257)
Q Consensus 182 ~~~~~~~~~~~~~~~~~i~~~~~~~~ 207 (257)
+.....++...+..+..+|+..+.+.
T Consensus 359 ~~~~~~s~~~~~ii~~il~~~~~lRv 384 (403)
T TIGR00836 359 AAIIAWAFVVTFIILKILDKTIGLRV 384 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccC
Confidence 33333344445555666776655443
No 136
>PRK10655 potE putrescine transporter; Provisional
Probab=24.45 E-value=5.2e+02 Score=23.18 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=10.8
Q ss_pred hhhHHHHHHHHHHHHH
Q 038856 107 AYGYAVVFIANICTAA 122 (257)
Q Consensus 107 ~~G~~~~l~a~~~~a~ 122 (257)
..|..+.+++...|+.
T Consensus 411 ~~~~~~~~~g~~~y~~ 426 (438)
T PRK10655 411 LYGSIVTFLGWTLYGL 426 (438)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4577777777777764
No 137
>TIGR00909 2A0306 amino acid transporter.
Probab=23.91 E-value=5.2e+02 Score=23.01 Aligned_cols=16 Identities=0% Similarity=0.036 Sum_probs=9.6
Q ss_pred hhhHHHHHHHHHHHHH
Q 038856 107 AYGYAVVFIANICTAA 122 (257)
Q Consensus 107 ~~G~~~~l~a~~~~a~ 122 (257)
..+.++..++...|.+
T Consensus 413 ~~~~~~~~~g~~~y~~ 428 (429)
T TIGR00909 413 VWFLVWMLLGSVFYFI 428 (429)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3566666666666643
No 138
>PF11384 DUF3188: Protein of unknown function (DUF3188); InterPro: IPR021524 This bacterial family of proteins has no known function.
Probab=23.71 E-value=72 Score=19.44 Aligned_cols=22 Identities=14% Similarity=-0.026 Sum_probs=15.3
Q ss_pred hhhhhHHHHHHHHHHHHHhhhh
Q 038856 233 LFNIVGQALGFLGSCFYAYCKL 254 (257)
Q Consensus 233 ~~~~~G~~li~~g~~~~~~~k~ 254 (257)
|.-.+|..+++.|.+...++++
T Consensus 27 P~~~~Gi~Lii~g~v~r~~~rk 48 (49)
T PF11384_consen 27 PAILIGIGLIISGGVGRRRRRK 48 (49)
T ss_pred HHHHHhHHHHhhhhhhhhhhcc
Confidence 5567788888888776665544
No 139
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=22.95 E-value=4e+02 Score=21.35 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=17.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHh
Q 038856 107 AYGYAVVFIANICTAAYLAFISRI 130 (257)
Q Consensus 107 ~~G~~~~l~a~~~~a~~~v~~~~~ 130 (257)
..+.+..+++++.++++..+-||.
T Consensus 178 l~~~~~iiig~i~~~~~~~lkkk~ 201 (206)
T PF06570_consen 178 LPPWVYIIIGVIAFALRFYLKKKY 201 (206)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHh
Confidence 346778888899998887665543
No 140
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=22.59 E-value=6.3e+02 Score=23.50 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHH----H--h--Cc-ccCcchhHHHHHHHhhhhh
Q 038856 57 YTTLRRTTVAFTMIVEYL----L--T--GQ-KHSLPVVGSVGIILLGAFL 97 (257)
Q Consensus 57 ~~~~~~~~pv~~~i~~~l----~--~--~e-~~~~~~~~~~~~~~~Gv~~ 97 (257)
.+-..+.+|+++.+++.+ + + ++ +++...-.++.+.+.|+..
T Consensus 310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f 359 (493)
T PRK15462 310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGF 359 (493)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHH
Confidence 344457777777766654 2 2 22 3555555666666666654
No 141
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=22.46 E-value=4.8e+02 Score=22.08 Aligned_cols=22 Identities=18% Similarity=0.067 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 038856 110 YAVVFIANICTAAYLAFISRIG 131 (257)
Q Consensus 110 ~~~~l~a~~~~a~~~v~~~~~~ 131 (257)
..+..+++..+.+..-..+...
T Consensus 169 ~~~l~~~~~l~~~~~~~i~~~~ 190 (289)
T COG0382 169 AWLLLLAAILWTLGYDIIYAIQ 190 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3445555555555554555444
No 142
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=22.44 E-value=5.9e+02 Score=23.15 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=17.4
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhc
Q 038856 233 LFNIVGQALGFLGSCFYAYCKLQ 255 (257)
Q Consensus 233 ~~~~~G~~li~~g~~~~~~~k~~ 255 (257)
.....|..+...|..+|.+.+++
T Consensus 411 ~~~~~~~~~~~~g~~~y~~~~~~ 433 (468)
T TIGR03810 411 KYLLLSAILYAPGIYFYARARKE 433 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678888889999988765544
No 143
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=22.33 E-value=40 Score=18.46 Aligned_cols=18 Identities=33% Similarity=0.491 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhhhhcC
Q 038856 239 QALGFLGSCFYAYCKLQG 256 (257)
Q Consensus 239 ~~li~~g~~~~~~~k~~~ 256 (257)
+++++.|...+.+.|.++
T Consensus 6 i~L~l~ga~f~~fKKyQ~ 23 (33)
T PF10855_consen 6 IILILGGAAFYGFKKYQN 23 (33)
T ss_pred ehhhhhhHHHHHHHHHHH
Confidence 457778888888887653
No 144
>PF10101 DUF2339: Predicted membrane protein (DUF2339); InterPro: IPR019286 This entry, found in various hypothetical bacterial proteins, has no known function.
Probab=21.61 E-value=7.6e+02 Score=24.04 Aligned_cols=19 Identities=21% Similarity=0.195 Sum_probs=13.6
Q ss_pred CcchhHHHHHHHhhhhhhc
Q 038856 81 SLPVVGSVGIILLGAFLAG 99 (257)
Q Consensus 81 ~~~~~~~~~~~~~Gv~~~~ 99 (257)
++..++++++.+.|+++..
T Consensus 4 n~l~~iG~~~l~lG~~fl~ 22 (745)
T PF10101_consen 4 NWLVRIGILVLLLGVVFLL 22 (745)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 3456678888888887764
No 145
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=21.19 E-value=62 Score=18.84 Aligned_cols=18 Identities=22% Similarity=0.480 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHhhhh
Q 038856 237 VGQALGFLGSCFYAYCKL 254 (257)
Q Consensus 237 ~G~~li~~g~~~~~~~k~ 254 (257)
+|.++++.+.+++-+.++
T Consensus 21 V~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 21 VGVIIIVLGAFLFFWYRR 38 (40)
T ss_pred hHHHHHHHHHHhheEEec
Confidence 345555666666644443
No 146
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=20.42 E-value=5.9e+02 Score=22.33 Aligned_cols=75 Identities=13% Similarity=0.102 Sum_probs=37.4
Q ss_pred CCcChhHHHHHhHHHHHHHHHHHHhhh--hh-------ccccchHHHHHHHHHHHHHHHHHHHH--hCcccCcchhHHHH
Q 038856 21 TLVPLKTLVHTLPLALSYLLYMLITME--AV-------RGINVPMYTTLRRTTVAFTMIVEYLL--TGQKHSLPVVGSVG 89 (257)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--al-------~~~~~~~~~~~~~~~pv~~~i~~~l~--~~e~~~~~~~~~~~ 89 (257)
+..+|++|+....+...........+. ++ ...+.+......+...+...+...+. +-+|..+++.....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~ 91 (394)
T PRK10213 12 DAITRPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILF 91 (394)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHH
Confidence 455666777656555443222222211 11 12344444555555555555554444 34788888776555
Q ss_pred HHHhhh
Q 038856 90 IILLGA 95 (257)
Q Consensus 90 ~~~~Gv 95 (257)
..+.++
T Consensus 92 ~~~~~~ 97 (394)
T PRK10213 92 AVLLTL 97 (394)
T ss_pred HHHHHH
Confidence 444443
No 147
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=20.10 E-value=1e+02 Score=26.05 Aligned_cols=23 Identities=13% Similarity=0.345 Sum_probs=18.8
Q ss_pred cchhhhhHHHHHHHHHHHHHhhh
Q 038856 231 FDLFNIVGQALGFLGSCFYAYCK 253 (257)
Q Consensus 231 ~t~~~~~G~~li~~g~~~~~~~k 253 (257)
+|..|+++..+++.|+.+..+++
T Consensus 235 ls~~Q~~sl~~i~~g~~~~~~~~ 257 (269)
T PRK12437 235 LRIAQVISIPLIIIGIILIIYRR 257 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999987765443
Done!