Query 038856
Match_columns 257
No_of_seqs 124 out of 1200
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 06:04:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038856.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038856hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.5 3.7E-07 1.3E-11 65.7 8.2 69 33-101 35-104 (110)
2 2i68_A Protein EMRE; transmemb 98.5 3.9E-07 1.3E-11 68.0 7.3 69 184-253 35-105 (137)
3 2i68_A Protein EMRE; transmemb 98.4 4E-07 1.4E-11 67.9 6.7 68 33-100 35-103 (137)
4 3b5d_A Multidrug transporter E 98.3 5E-06 1.7E-10 59.7 9.0 67 187-254 38-106 (110)
5 2l2t_A Receptor tyrosine-prote 41.5 26 0.00088 20.0 2.8 15 241-255 25-39 (44)
6 2ks1_B Epidermal growth factor 39.7 29 0.00098 19.8 2.8 14 242-255 27-40 (44)
7 1pw4_A Glycerol-3-phosphate tr 23.2 3.2E+02 0.011 22.6 9.3 41 52-92 59-101 (451)
8 4dve_A Biotin transporter BIOY 15.8 3.8E+02 0.013 20.4 9.1 88 27-119 16-111 (198)
9 2jwa_A Receptor tyrosine-prote 13.8 1.8E+02 0.0062 16.4 2.8 8 247-254 32-39 (44)
10 3gia_A Uncharacterized protein 13.2 5.8E+02 0.02 21.3 10.8 19 71-89 360-378 (444)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.52 E-value=3.7e-07 Score=65.66 Aligned_cols=69 Identities=12% Similarity=0.211 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhhhhhccccchHHHHH-HHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhccc
Q 038856 33 PLALSYLLYMLITMEAVRGINVPMYTTL-RRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGAR 101 (257)
Q Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~~~~~~-~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~~ 101 (257)
...+.+....++...++++.|++.+..+ ..+.|+++.+.+++++||++++.++.++.++++|++.+...
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3345677888999999999999999888 89999999999999999999999999999999999987544
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.47 E-value=3.9e-07 Score=68.03 Aligned_cols=69 Identities=17% Similarity=0.237 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHH-HHHhhccchhHHHHH-hHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhhh
Q 038856 184 SCIMAFLINYYV-FLNTILNSALTQTIC-GNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYCK 253 (257)
Q Consensus 184 ~~~~~~~~~~~~-~~~i~~~~~~~~s~~-~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~k 253 (257)
.+++++...+.. ..++|+.++..+..+ ..+.|+.++++|+++||| ++|+.+++|++++++|+++.++.+
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE-~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQ-RLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHhcCC
Confidence 334444444444 788999999988777 899999999999999996 999999999999999999988754
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.44 E-value=4e-07 Score=67.94 Aligned_cols=68 Identities=12% Similarity=0.225 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhhhhhccccchHHHHH-HHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhcc
Q 038856 33 PLALSYLLYMLITMEAVRGINVPMYTTL-RRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGA 100 (257)
Q Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~~~~~~-~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~ 100 (257)
...+.+....++.+.+++++|++.+..+ .++.|++++++++++++|++++.++++++++++|++++..
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3345678889999999999999999888 8999999999999999999999999999999999998744
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.27 E-value=5e-06 Score=59.67 Aligned_cols=67 Identities=16% Similarity=0.214 Sum_probs=55.8
Q ss_pred HHHHHHHHH-HHHhhccchhHHHHH-hHhHHHHHHHHHHHhcCCcCcchhhhhHHHHHHHHHHHHHhhhh
Q 038856 187 MAFLINYYV-FLNTILNSALTQTIC-GNLKDLLTIGLGWLLFGGLPFDLFNIVGQALGFLGSCFYAYCKL 254 (257)
Q Consensus 187 ~~~~~~~~~-~~~i~~~~~~~~s~~-~~~~~i~~~~~~~~~f~e~~~t~~~~~G~~li~~g~~~~~~~k~ 254 (257)
.+....+.. ..++|+.+...+..+ ..+.|+.+++.|+++||| ++|+.+++|..++++|++..+..++
T Consensus 38 ~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E-~~s~~~~~Gi~lIi~Gv~~l~~~~~ 106 (110)
T 3b5d_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQ-RLDLPAIIGMMLICAGVLIINLLSR 106 (110)
T ss_pred HHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 333334443 678999988888776 899999999999999996 9999999999999999999887653
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=41.46 E-value=26 Score=20.03 Aligned_cols=15 Identities=20% Similarity=-0.040 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhhhhc
Q 038856 241 LGFLGSCFYAYCKLQ 255 (257)
Q Consensus 241 li~~g~~~~~~~k~~ 255 (257)
++..+..+|.+++++
T Consensus 25 ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 25 IVGLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhhhhhh
Confidence 333444455554443
No 6
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=39.68 E-value=29 Score=19.83 Aligned_cols=14 Identities=14% Similarity=0.062 Sum_probs=6.2
Q ss_pred HHHHHHHHHhhhhc
Q 038856 242 GFLGSCFYAYCKLQ 255 (257)
Q Consensus 242 i~~g~~~~~~~k~~ 255 (257)
+..+..+|.+++++
T Consensus 27 i~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 27 VALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHHTTTC
T ss_pred HHHHHHHHhhhhHh
Confidence 33444455544433
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=23.16 E-value=3.2e+02 Score=22.57 Aligned_cols=41 Identities=10% Similarity=0.064 Sum_probs=23.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHH--hCcccCcchhHHHHHHH
Q 038856 52 INVPMYTTLRRTTVAFTMIVEYLL--TGQKHSLPVVGSVGIIL 92 (257)
Q Consensus 52 ~~~~~~~~~~~~~pv~~~i~~~l~--~~e~~~~~~~~~~~~~~ 92 (257)
.+......+.+...+...+...+. +.+|+.+++.+.+...+
T Consensus 59 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 59 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 455556666666655555555544 34777777765544443
No 8
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=15.81 E-value=3.8e+02 Score=20.45 Aligned_cols=88 Identities=14% Similarity=0.107 Sum_probs=51.0
Q ss_pred HHHHHhHHHHHHHHHHHHhhhh---hccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhhhccccc
Q 038856 27 TLVHTLPLALSYLLYMLITMEA---VRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFLAGARDL 103 (257)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~a---l~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~~~~~~~ 103 (257)
+.|+....+++-+....+...+ +-..|++. .++...+++.+.++..++=.....+=++++.+|.=+...+..
T Consensus 16 k~r~l~~~alfaAliavla~i~~Ipip~~pVPi-----TlQtl~V~LaG~~LG~r~G~lsv~lYlllG~~GlPVFagg~g 90 (198)
T 4dve_A 16 KVKTLTYSAFMTAFIIILGFLPGIPIGFIPVPI-----ILQNMGIMMAGGLLGPKYGTISVGAFLALALIGLPVLTGGNG 90 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCBCCSSSSCCB-----CSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBTTTBC
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCCcCc-----cHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHcCccccCCCC
Confidence 4566666666666665655543 33445553 356677777777765555445555556777788766544322
Q ss_pred c-----cchhhHHHHHHHHHH
Q 038856 104 S-----FDAYGYAVVFIANIC 119 (257)
Q Consensus 104 ~-----~~~~G~~~~l~a~~~ 119 (257)
. ....|+.++..-+..
T Consensus 91 G~~~l~gPTgGYLiGF~~aA~ 111 (198)
T 4dve_A 91 GAASFLGPSGGYRIAWLFTPF 111 (198)
T ss_dssp CSGGGGSTTHHHHHHHHHHHH
T ss_pred chhHHhcchhHHHHHHHHHHH
Confidence 1 123577776655433
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=13.80 E-value=1.8e+02 Score=16.44 Aligned_cols=8 Identities=0% Similarity=-0.205 Sum_probs=3.4
Q ss_pred HHHHhhhh
Q 038856 247 CFYAYCKL 254 (257)
Q Consensus 247 ~~~~~~k~ 254 (257)
.+|-++++
T Consensus 32 ~~~~RRR~ 39 (44)
T 2jwa_A 32 GILIKRRQ 39 (44)
T ss_dssp HHHHHHHC
T ss_pred Hhheehhh
Confidence 34444443
No 10
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=13.23 E-value=5.8e+02 Score=21.28 Aligned_cols=19 Identities=0% Similarity=-0.333 Sum_probs=8.4
Q ss_pred HHHHHhCcccCcchhHHHH
Q 038856 71 VEYLLTGQKHSLPVVGSVG 89 (257)
Q Consensus 71 ~~~l~~~e~~~~~~~~~~~ 89 (257)
.+.+.+++|....++....
T Consensus 360 ~~~~~~r~~~~~~~~~~~~ 378 (444)
T 3gia_A 360 LSHYILIDEVGGRKEIVIF 378 (444)
T ss_dssp HHHHHTHHHHCCCHHHHHH
T ss_pred HHHHHhhhcCCCcchHHHH
Confidence 3444455444444444433
Done!