Query 038856
Match_columns 257
No_of_seqs 124 out of 1200
Neff 9.2
Searched_HMMs 13730
Date Mon Mar 25 06:04:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038856.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038856hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 34.2 92 0.0067 23.7 12.8 44 52-95 56-101 (447)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 15.7 58 0.0042 14.7 2.9 15 236-250 2-16 (27)
3 d2r6gf1 e.70.1.1 (F:13-260) Ma 13.6 2.1E+02 0.015 20.9 6.2 64 30-97 4-67 (248)
4 d1v54k_ f.23.5.1 (K:) Mitochon 9.3 1.5E+02 0.011 15.7 3.9 31 108-138 8-39 (49)
5 d1u7ga_ f.44.1.1 (A:) Ammonium 7.1 4.9E+02 0.036 20.0 21.2 54 75-130 249-304 (383)
6 d2iuba2 f.17.3.1 (A:286-349) M 3.1 3.6E+02 0.026 14.5 2.2 12 244-255 52-63 (64)
7 d3dtub2 f.17.2.1 (B:30-129) Ba 3.1 4.7E+02 0.034 15.5 3.0 19 235-253 35-53 (100)
8 d3ehbb2 f.17.2.1 (B:1-107) Bac 2.4 6.2E+02 0.045 15.1 2.9 16 237-252 43-58 (107)
9 d1eysh2 f.23.10.1 (H:7-43) Pho 2.3 4.6E+02 0.034 12.7 2.3 17 239-255 13-29 (37)
10 d1nyra2 d.15.10.1 (A:4-62) Thr 1.9 3.7E+02 0.027 14.2 1.0 14 5-18 3-16 (59)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=34.15 E-value=92 Score=23.72 Aligned_cols=44 Identities=11% Similarity=0.073 Sum_probs=27.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHH--hCcccCcchhHHHHHHHhhh
Q 038856 52 INVPMYTTLRRTTVAFTMIVEYLL--TGQKHSLPVVGSVGIILLGA 95 (257)
Q Consensus 52 ~~~~~~~~~~~~~pv~~~i~~~l~--~~e~~~~~~~~~~~~~~~Gv 95 (257)
.+.+....+.+...+...+...+. +-+|+.+++.+.....+.++
T Consensus 56 ~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~ 101 (447)
T d1pw4a_ 56 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 101 (447)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 455566666666666666655554 45888888876555444433
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=15.68 E-value=58 Score=14.70 Aligned_cols=15 Identities=40% Similarity=0.822 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHHHHH
Q 038856 236 IVGQALGFLGSCFYA 250 (257)
Q Consensus 236 ~~G~~li~~g~~~~~ 250 (257)
++|.+.+-.|.+.|.
T Consensus 2 vlgli~~tl~glf~a 16 (27)
T d2e74g1 2 VLGLVFATLGGLFYA 16 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHH
Confidence 356665555555554
No 3
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=13.57 E-value=2.1e+02 Score=20.90 Aligned_cols=64 Identities=17% Similarity=0.056 Sum_probs=38.4
Q ss_pred HHhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCcccCcchhHHHHHHHhhhhh
Q 038856 30 HTLPLALSYLLYMLITMEAVRGINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLPVVGSVGIILLGAFL 97 (257)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~i~~~l~~~e~~~~~~~~~~~~~~~Gv~~ 97 (257)
++..+|++.....++....+..-+...+. ..-+.+.+..++++.+|.-+.+++-=.+++..++.
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~Fv 67 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFV 67 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccceehhhhHHHHHHHHH
Confidence 56666766655555554444444433333 44566777778888888888887655554444443
No 4
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.32 E-value=1.5e+02 Score=15.72 Aligned_cols=31 Identities=26% Similarity=0.419 Sum_probs=19.0
Q ss_pred hhH-HHHHHHHHHHHHHHHHHHHhcccCCCCh
Q 038856 108 YGY-AVVFIANICTAAYLAFISRIGRSSGLSS 138 (257)
Q Consensus 108 ~G~-~~~l~a~~~~a~~~v~~~~~~~~~~~~~ 138 (257)
+|. +++-.+++|.|.+....-+..-+.+++|
T Consensus 8 YGn~vL~~Ga~fc~avW~yv~TQ~gI~WnlSP 39 (49)
T d1v54k_ 8 YGNAVLASGATFCVAVWVYMATQIGIEWNPSP 39 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCC
T ss_pred cCcEEEecccchhhhhhhheeeeeeeeecccc
Confidence 454 4455566888888777666654444444
No 5
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=7.07 E-value=4.9e+02 Score=19.97 Aligned_cols=54 Identities=9% Similarity=-0.167 Sum_probs=24.2
Q ss_pred HhCcccCcchhHHHHHHHhhhhhhcccccccchh-hHHHHHHHH-HHHHHHHHHHHHh
Q 038856 75 LTGQKHSLPVVGSVGIILLGAFLAGARDLSFDAY-GYAVVFIAN-ICTAAYLAFISRI 130 (257)
Q Consensus 75 ~~~e~~~~~~~~~~~~~~~Gv~~~~~~~~~~~~~-G~~~~l~a~-~~~a~~~v~~~~~ 130 (257)
+.++|++...... -.++|.+.......-.++. ..+.+.++. +++-.+..+.+|.
T Consensus 249 ~~~~k~~~~~~~n--G~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~ 304 (383)
T d1u7ga_ 249 ALRGLPSLLGACS--GAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLL 304 (383)
T ss_dssp HHHSSCCHHHHHH--HHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHH--HhhhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHhhc
Confidence 3455666554332 2344555443332223434 355555544 4444444444444
No 6
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=3.12 E-value=3.6e+02 Score=14.52 Aligned_cols=12 Identities=17% Similarity=0.318 Sum_probs=5.1
Q ss_pred HHHHHHHhhhhc
Q 038856 244 LGSCFYAYCKLQ 255 (257)
Q Consensus 244 ~g~~~~~~~k~~ 255 (257)
.+..++.+.|+|
T Consensus 52 ~~~~~~~~f~rk 63 (64)
T d2iuba2 52 IAVIMVVYFKKK 63 (64)
T ss_dssp HHHHHHTTTTSC
T ss_pred HHHHHHHHHhcc
Confidence 344444444443
No 7
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.09 E-value=4.7e+02 Score=15.46 Aligned_cols=19 Identities=16% Similarity=0.039 Sum_probs=8.9
Q ss_pred hhhHHHHHHHHHHHHHhhh
Q 038856 235 NIVGQALGFLGSCFYAYCK 253 (257)
Q Consensus 235 ~~~G~~li~~g~~~~~~~k 253 (257)
-..++.+.+.+...|...|
T Consensus 35 i~~~I~~~V~~~l~~~~~~ 53 (100)
T d3dtub2 35 IIAAITIFVTLLILYAVWR 53 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 3344444455555555433
No 8
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=2.35 E-value=6.2e+02 Score=15.10 Aligned_cols=16 Identities=0% Similarity=-0.228 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHHHHhh
Q 038856 237 VGQALGFLGSCFYAYC 252 (257)
Q Consensus 237 ~G~~li~~g~~~~~~~ 252 (257)
.+..+.+.|...|...
T Consensus 43 ~~I~~~V~~~~~~~~~ 58 (107)
T d3ehbb2 43 TAVTIFVCLLLLICIV 58 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3334444455554433
No 9
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=2.30 E-value=4.6e+02 Score=12.74 Aligned_cols=17 Identities=24% Similarity=0.145 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhhhhc
Q 038856 239 QALGFLGSCFYAYCKLQ 255 (257)
Q Consensus 239 ~~li~~g~~~~~~~k~~ 255 (257)
.-+-++|.+.|-+++.+
T Consensus 13 Fw~FFagLi~YL~rE~~ 29 (37)
T d1eysh2 13 FWLFFFGLIIYLRREDK 29 (37)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccc
Confidence 33456677777766544
No 10
>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]}
Probab=1.93 E-value=3.7e+02 Score=14.24 Aligned_cols=14 Identities=21% Similarity=0.403 Sum_probs=7.7
Q ss_pred EEeccCCccccCCC
Q 038856 5 ISFTVGEPQTTSNN 18 (257)
Q Consensus 5 ~~f~~~~~~~~~~~ 18 (257)
+.|||++..+++++
T Consensus 3 ItlPDG~~~~~~~g 16 (59)
T d1nyra2 3 IQFPDGNKKAFDKG 16 (59)
T ss_dssp BCCTTSCCCBCCTT
T ss_pred EECCCCCEEEcCCC
Confidence 34666666555443
Done!