BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038858
(740 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 214/703 (30%), Positives = 326/703 (46%), Gaps = 101/703 (14%)
Query: 5 SSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSM 64
+SL +L L N+L+ VTT T L + + L++L + ++L FP
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTS-LGSCSGLKFLNVSSNTLD----------FPG------ 142
Query: 65 IDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTN 124
KV+G ++ SLE LD++ I+ ++ LK+L++S G
Sbjct: 143 ---KVSGGLK------LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS----GNK 189
Query: 125 SSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSP--- 181
S +D C V+L+ L +++N+ +P+ L + ++L+ LD+S N+L+G S +
Sbjct: 190 ISGDVDVSRC--VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTC 246
Query: 182 ---LILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVT--FPKFLHHQ-NKLED 235
+L+ +N+ I P LKSL S E+ T P FL + L
Sbjct: 247 TELKLLNISSNQFVGPI--------PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTG 298
Query: 236 VDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHS---HKSLRLLDVSNNNF 292
+DLS G P + + N+ +G LP+ + + L++LD+S N F
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNN-FSG--ELPMDTLLKMRGLKVLDLSFNEF 355
Query: 293 QGRIPAEIGDILPSLSSFNISMNALDGSI-PSSFGN-MNFLQILDLSNNHLTGEIPEHLA 350
G +P + ++ SL + ++S N G I P+ N N LQ L L NN TG+IP L+
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415
Query: 351 IGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLN 410
C L L LS N L G + S +L+KL L L N EIPQ L +LE L L+
Sbjct: 416 -NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474
Query: 411 NNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYL 470
N+L+G+IP L N T L +I + N L G IP +L++L IL +S+N+ SG++P+ L
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534
Query: 471 S-----------YNRLNGSIPDRI----------------------DGLLRLSHLILAHN 497
N NG+IP + DG+ + H
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594
Query: 498 NLEGEVPVXXXXXXXXXXXXXSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIG 557
+G + G P FDN S++ +D+S N L G
Sbjct: 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG-------SMMF-LDMSYNMLSG 646
Query: 558 DIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNAL 617
IP +IG++ + LNL HN+++G+I +LR + LDL NKL+G+IP + L L
Sbjct: 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706
Query: 618 VVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPLPIC 660
++ NNLSG IPEM QF TF + + NP LCG PLP C
Sbjct: 707 TEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRC 748
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 102/360 (28%), Positives = 157/360 (43%), Gaps = 71/360 (19%)
Query: 336 LSNNH-----------------------LTGEIPEHLAIG-CVNLEILVLSNNNLE---- 367
LSN+H L+G + ++G C L+ L +S+N L+
Sbjct: 84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143
Query: 368 --GHMFSKNFNLTKLS-----------WLLLEDNHFVEEIPQS---------LSKCLSLE 405
G + + + LS W+L + ++ + S +S+C++LE
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLE 203
Query: 406 GLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGS 465
L +++NN S IP +LG+ + LQ++ I N L G A L++L IS N G
Sbjct: 204 FLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 262
Query: 466 LP-------SYLSY--NRLNGSIPDRIDGLL-RLSHLILAHNNLEGEVPVXXXXXXXXXX 515
+P YLS N+ G IPD + G L+ L L+ N+ G VP
Sbjct: 263 IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322
Query: 516 XXXSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLT-RIQTLNL 574
S N G +P L + R L +L DLS N+ G++P + NL+ + TL+L
Sbjct: 323 LALSSNNFSGELP----MDTLLKMRGLKVL---DLSFNEFSGELPESLTNLSASLLTLDL 375
Query: 575 SHNNLTGTILSTFTN--LRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIP 632
S NN +G IL ++ L L +N GKIP L + LV +++N LSG IP
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 214/703 (30%), Positives = 326/703 (46%), Gaps = 101/703 (14%)
Query: 5 SSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSM 64
+SL +L L N+L+ VTT T L + + L++L + ++L FP
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTS-LGSCSGLKFLNVSSNTLD----------FPG------ 139
Query: 65 IDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTN 124
KV+G ++ SLE LD++ I+ ++ LK+L++S G
Sbjct: 140 ---KVSGGLK------LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS----GNK 186
Query: 125 SSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSP--- 181
S +D C V+L+ L +++N+ +P+ L + ++L+ LD+S N+L+G S +
Sbjct: 187 ISGDVDVSRC--VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTC 243
Query: 182 ---LILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVT--FPKFLHHQ-NKLED 235
+L+ +N+ I P LKSL S E+ T P FL + L
Sbjct: 244 TELKLLNISSNQFVGPI--------PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTG 295
Query: 236 VDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHS---HKSLRLLDVSNNNF 292
+DLS G P + + N+ +G LP+ + + L++LD+S N F
Sbjct: 296 LDLSGNHFYGAVPPFFGSCSLLESLALSSNN-FSG--ELPMDTLLKMRGLKVLDLSFNEF 352
Query: 293 QGRIPAEIGDILPSLSSFNISMNALDGSI-PSSFGN-MNFLQILDLSNNHLTGEIPEHLA 350
G +P + ++ SL + ++S N G I P+ N N LQ L L NN TG+IP L+
Sbjct: 353 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 412
Query: 351 IGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLN 410
C L L LS N L G + S +L+KL L L N EIPQ L +LE L L+
Sbjct: 413 -NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 471
Query: 411 NNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYL 470
N+L+G+IP L N T L +I + N L G IP +L++L IL +S+N+ SG++P+ L
Sbjct: 472 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 531
Query: 471 S-----------YNRLNGSIPDRI----------------------DGLLRLSHLILAHN 497
N NG+IP + DG+ + H
Sbjct: 532 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 591
Query: 498 NLEGEVPVXXXXXXXXXXXXXSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIG 557
+G + G P FDN S++ +D+S N L G
Sbjct: 592 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG-------SMMF-LDMSYNMLSG 643
Query: 558 DIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNAL 617
IP +IG++ + LNL HN+++G+I +LR + LDL NKL+G+IP + L L
Sbjct: 644 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 703
Query: 618 VVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPLPIC 660
++ NNLSG IPEM QF TF + + NP LCG PLP C
Sbjct: 704 TEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRC 745
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 102/360 (28%), Positives = 157/360 (43%), Gaps = 71/360 (19%)
Query: 336 LSNNH-----------------------LTGEIPEHLAIG-CVNLEILVLSNNNLE---- 367
LSN+H L+G + ++G C L+ L +S+N L+
Sbjct: 81 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 140
Query: 368 --GHMFSKNFNLTKLS-----------WLLLEDNHFVEEIPQS---------LSKCLSLE 405
G + + + LS W+L + ++ + S +S+C++LE
Sbjct: 141 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLE 200
Query: 406 GLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGS 465
L +++NN S IP +LG+ + LQ++ I N L G A L++L IS N G
Sbjct: 201 FLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 259
Query: 466 LP-------SYLSY--NRLNGSIPDRIDGLL-RLSHLILAHNNLEGEVPVXXXXXXXXXX 515
+P YLS N+ G IPD + G L+ L L+ N+ G VP
Sbjct: 260 IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 319
Query: 516 XXXSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLT-RIQTLNL 574
S N G +P L + R L +L DLS N+ G++P + NL+ + TL+L
Sbjct: 320 LALSSNNFSGELP----MDTLLKMRGLKVL---DLSFNEFSGELPESLTNLSASLLTLDL 372
Query: 575 SHNNLTGTILSTFTN--LRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIP 632
S NN +G IL ++ L L +N GKIP L + LV +++N LSG IP
Sbjct: 373 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 432
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/273 (32%), Positives = 129/273 (47%), Gaps = 31/273 (11%)
Query: 408 HLNNNNLSG-------KIPQWLGNLTGLQYIIIPE-NHLEGPIPVAFCQLDSLQILGISD 459
+NN +LSG IP L NL L ++ I N+L GPIP A +L L L I+
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 460 NNISGSLPSYLS-----------YNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVP-VXX 507
N+SG++P +LS YN L+G++P I L L + N + G +P
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170
Query: 508 XXXXXXXXXXXSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLT 567
S N+L G IPP F N L + +DLS N L GD G+
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNL---------AFVDLSRNMLEGDASVLFGSDK 221
Query: 568 RIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNL 627
Q ++L+ N+L L +++ LDL +N++ G +P L +L L +V++NNL
Sbjct: 222 NTQKIHLAKNSLAFD-LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Query: 628 SGKIPEMTTQFATFNESNYKGNPFLCGLPLPIC 660
G+IP+ F+ S Y N LCG PLP C
Sbjct: 281 CGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPAC 312
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 104/221 (47%), Gaps = 23/221 (10%)
Query: 376 NLTKLSWLLLED-NHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIP 434
NL L++L + N+ V IP +++K L L++ + N+SG IP +L + L +
Sbjct: 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133
Query: 435 ENHLEGPIPVAFCQLDSLQILGISDNNISGSLP-SY-----------LSYNRLNGSIPDR 482
N L G +P + L +L + N ISG++P SY +S NRL G IP
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193
Query: 483 IDGLLRLSHLILAHNNLEGEVPVXXXXXXXXXXXXXSDNKLHGLIPPCFDNTALHERRVL 542
L L+ + L+ N LEG+ V + N L FD L + +
Sbjct: 194 FAN-LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL------AFD---LGKVGLS 243
Query: 543 SLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTI 583
L+G+DL N++ G +P + L + +LN+S NNL G I
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 99/211 (46%), Gaps = 23/211 (10%)
Query: 224 PKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLR 283
P + +L + ++H ++G P++L + T L +L ++L+G I S +L
Sbjct: 94 PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT-LVTLDFSYNALSGTLPPSISSLPNLV 152
Query: 284 LLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTG 343
+ N G IP G +S IS N L G IP +F N+N L +DLS N L G
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG 211
Query: 344 EIPEHLAIGCVNLEILVLSNNNLEGHMFSKN---FNLTK------LSWLLLEDNHFVEEI 394
+ +L S+ N + +KN F+L K L+ L L +N +
Sbjct: 212 DA-----------SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTL 260
Query: 395 PQSLSKCLSLEGLHLNNNNLSGKIPQWLGNL 425
PQ L++ L L+++ NNL G+IPQ GNL
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL 290
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 96/193 (49%), Gaps = 13/193 (6%)
Query: 256 TKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMN 315
T+L L + + +++G + K+L LD S N G +P I LP+L N
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGITFDGN 159
Query: 316 ALDGSIPSSFGNMNFL-QILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGH---MF 371
+ G+IP S+G+ + L + +S N LTG+IP A +NL + LS N LEG +F
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA--NLNLAFVDLSRNMLEGDASVLF 217
Query: 372 SKNFNLTKLSWLLLEDNHFVEEIPQ-SLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQY 430
+ N K+ L N ++ + LSK +L GL L NN + G +PQ L L L
Sbjct: 218 GSDKNTQKIH---LAKNSLAFDLGKVGLSK--NLNGLDLRNNRIYGTLPQGLTQLKFLHS 272
Query: 431 IIIPENHLEGPIP 443
+ + N+L G IP
Sbjct: 273 LNVSFNNLCGEIP 285
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 114/244 (46%), Gaps = 16/244 (6%)
Query: 104 IGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSL 163
I +S+ L YL+ Y N + + L L L++ + ++ G++P L+ + +L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 164 RTLDVSSNQLTG----SISSSPLILDAY--NNEINAEITESHSLTAPNFQLKSLSLSSGY 217
TLD S N L+G SISS P ++ N I+ I +S+ + F S+++S
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF--TSMTISRNR 185
Query: 218 EDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRL-PI 276
G P F + L VDLS + G+ + L ++ + + L +SLA F L +
Sbjct: 186 LTGKIPPTFANLN--LAFVDLSRNMLEGD-ASVLFGSDKNTQKIHLAKNSLA--FDLGKV 240
Query: 277 HSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDL 336
K+L LD+ NN G +P + L L S N+S N L G IP GN+ +
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAY 298
Query: 337 SNNH 340
+NN
Sbjct: 299 ANNK 302
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 568 RIQTLNLSHNNLTGT--ILSTFTNLRHIESLDLYH-NKLNGKIPCQLVELNALVVFSVAY 624
R+ L+LS NL I S+ NL ++ L + N L G IP + +L L + +
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 625 NNLSGKIPEMTTQFATFNESNYKGNPFLCGLPLPICRSP 663
N+SG IP+ +Q T ++ N LP I P
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 133/324 (41%), Gaps = 29/324 (8%)
Query: 283 RLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLT 342
RLLD+ N + E P L ++ N + P +F N+ L+ L L +N L
Sbjct: 35 RLLDLGKNRIKTLNQDEFAS-FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
Query: 343 GEIPEHLAIGCVNLEILVLSNNN---LEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLS 399
IP + G NL L +S N L +MF +NL L + DN V ++ S
Sbjct: 94 -LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE---VGDNDLVYISHRAFS 149
Query: 400 KCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISD 459
SLE L L NL+ + L +L GL + + ++ +F +L L++L IS
Sbjct: 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS- 208
Query: 460 NNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVXXXXXXXXXXXXXS 519
+ L+ P+ + G L L+ L + H NL + S
Sbjct: 209 -----------HWPYLDTMTPNCLYG-LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLS 256
Query: 520 DNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNL 579
N + + + + LHE L L I L +L P L ++ LN+S N L
Sbjct: 257 YNPISTI-----EGSMLHE---LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308
Query: 580 TGTILSTFTNLRHIESLDLYHNKL 603
T S F ++ ++E+L L N L
Sbjct: 309 TTLEESVFHSVGNLETLILDSNPL 332
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 77/188 (40%), Gaps = 41/188 (21%)
Query: 3 SFSSLNTL---CLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSL 59
+FS LN+L L NLT I T LH + L L+I+ ++ + F L
Sbjct: 147 AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL-----IVLRLRHLNINAIRDYS--FKRL 199
Query: 60 KSLSMIDCKVNGVVRSQGFPHFKSLEYLD-MNTACI-ALNASFLQIIGASMP-------- 109
L +++ YLD M C+ LN + L I ++
Sbjct: 200 YRLKVLE--------------ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR 245
Query: 110 ---FLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTL 166
+L++L+LSY T +L + L+ LQE+ + L P+ + LR L
Sbjct: 246 HLVYLRFLNLSYNPISTIEGSMLHE----LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL 301
Query: 167 DVSSNQLT 174
+VS NQLT
Sbjct: 302 NVSGNQLT 309
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 117/300 (39%), Gaps = 60/300 (20%)
Query: 121 FGTNSSRILDQG-LCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISS 179
G N + L+Q HL+EL + N + P N+ +LRTL + SN+L
Sbjct: 39 LGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL----KL 94
Query: 180 SPL-ILDAYNNEINAEITESHSLTAPNFQLKSL----SLSSGYEDGV------------- 221
PL + +N +I+E+ + ++ + L SL G D V
Sbjct: 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL 154
Query: 222 -----------TFP-KFLHHQNKLEDVDLSHIKMNG---------------EFPNW-LLE 253
+ P + L H + L + L H+ +N E +W L+
Sbjct: 155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214
Query: 254 NNT-------KLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPS 306
T L SLS+ + +L L + LR L++S N I + L
Sbjct: 215 TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST-IEGSMLHELLR 273
Query: 307 LSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNL 366
L + L P +F +N+L++L++S N LT + E + NLE L+L +N L
Sbjct: 274 LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 91/215 (42%), Gaps = 26/215 (12%)
Query: 259 ESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALD 318
+ L LVN + P KSL+ L ++N G +E+ LPSL ++S N L
Sbjct: 331 QHLELVNCKFG---QFPTLKLKSLKRLTFTSNK-GGNAFSEVD--LPSLEFLDLSRNGLS 384
Query: 319 ----------GSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEG 368
G+I + +++F ++ +S+N L E EHL NL+ +
Sbjct: 385 FKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK---------QM 435
Query: 369 HMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGK-IPQWLGNLTG 427
FS +L L +L + H + SLE L + N+ +P L
Sbjct: 436 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 495
Query: 428 LQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNI 462
L ++ + + LE P AF L SLQ+L +S NN
Sbjct: 496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 232 KLEDVDLSH--IKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSN 289
+LE +D H +K EF +L N +S + +A F + SL +L ++
Sbjct: 421 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA--FNGIFNGLSSLEVLKMAG 478
Query: 290 NNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHL 341
N+FQ +I L +L+ ++S L+ P++F +++ LQ+L++S+N+
Sbjct: 479 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
Query: 4 FSSLNTLCLMDNNLTEIVTTTTQELHNF-TNLEYLTL---DFSSL--HISLLQSIASIFP 57
+ LN+L ++D +L I+T+ QEL +F ++L +L L DF+ H S LQ I
Sbjct: 538 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ 597
Query: 58 SLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTAC 93
L + ++C QG P L +N C
Sbjct: 598 LLVEVERMECATPS--DKQGMP------VLSLNITC 625
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 563 IGNLTRIQTLNLSHNNLTGTIL-STFTNLRHIESLDLYHNKLNG 605
IG+L ++ LN++HN + L F+NL ++E LDL NK+
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 101/381 (26%), Positives = 154/381 (40%), Gaps = 76/381 (19%)
Query: 6 SLNTLCLMDNNLTEI-VTTTTQELHNFT-NLEYLTLDFSSL---HISLLQSIASIFPSLK 60
SL LCL N L + V Q L + T ++ L+L SL +L S P+L+
Sbjct: 53 SLTELCLRTNELGDAGVHLVLQGLQSPTCKIQKLSLQNCSLTEAGCGVLPSTLRSLPTLR 112
Query: 61 SLSMID-----------CKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMP 109
L + D C+ G++ Q LEY + A AS L+ A
Sbjct: 113 ELHLSDNPLGDAGLRLLCE--GLLDPQCHLEKLQLEYCRLTAASCEPLASVLRATRA--- 167
Query: 110 FLKYLSLSYFTFGTNSSRILDQGLC-PLVHLQELHMANNDLRGS----LPWCLANMTSLR 164
LK L++S G +R+L QGL L+ L + N L + L +A+ SLR
Sbjct: 168 -LKELTVSNNDIGEAGARVLGQGLADSACQLETLRLENCGLTPANCKDLCGIVASQASLR 226
Query: 165 TLDVSSNQLTGSISSSPLILDAYNNEINAEITE-SHSLTAPNFQLKSLSL------SSGY 217
LD+ SN L +A I E L +P +LK+L L +SG
Sbjct: 227 ELDLGSNGLG-----------------DAGIAELCPGLLSPASRLKTLWLWECDITASGC 269
Query: 218 EDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLEN----NTKLESLSLVNDSLAGP-- 271
D + L + L+++ L+ K+ E L E+ +LESL + + SL
Sbjct: 270 RD---LCRVLQAKETLKELSLAGNKLGDEGARLLCESLLQPGCQLESLWVKSCSLTAACC 326
Query: 272 --FRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNAL-------DGSIP 322
L + +K L L +S+N + I ++ +LS ++ L S
Sbjct: 327 QHVSLMLTQNKHLLELQLSSNKLG---DSGIQELCQALSQPGTTLRVLCLGDCEVTNSGC 383
Query: 323 SSFGNM----NFLQILDLSNN 339
SS ++ L+ LDLSNN
Sbjct: 384 SSLASLLLANRSLRELDLSNN 404
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 90/215 (41%), Gaps = 26/215 (12%)
Query: 259 ESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALD 318
+ L LVN + P KSL+ L ++N G +E+ LPSL ++S N L
Sbjct: 307 QHLELVNCKFG---QFPTLKLKSLKRLTFTSNK-GGNAFSEVD--LPSLEFLDLSRNGLS 360
Query: 319 ----------GSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEG 368
G+ + +++F ++ +S+N L E EHL NL+ +
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK---------QM 411
Query: 369 HMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGK-IPQWLGNLTG 427
FS +L L +L + H + SLE L + N+ +P L
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471
Query: 428 LQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNI 462
L ++ + + LE P AF L SLQ+L +S NN
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 232 KLEDVDLSH--IKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSN 289
+LE +D H +K EF +L N +S + +A F + SL +L ++
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA--FNGIFNGLSSLEVLKMAG 454
Query: 290 NNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHL 341
N+FQ +I L +L+ ++S L+ P++F +++ LQ+L++S+N+
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
Query: 4 FSSLNTLCLMDNNLTEIVTTTTQELHNF-TNLEYLTL---DFSSL--HISLLQSIASIFP 57
+ LN+L ++D +L I+T+ QEL +F ++L +L L DF+ H S LQ I
Sbjct: 514 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ 573
Query: 58 SLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTAC 93
L + ++C QG P L +N C
Sbjct: 574 LLVEVERMECATPS--DKQGMP------VLSLNITC 601
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 563 IGNLTRIQTLNLSHNNLTGTIL-STFTNLRHIESLDLYHNKLNG 605
IG+L ++ LN++HN + L F+NL ++E LDL NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 103/258 (39%), Gaps = 41/258 (15%)
Query: 259 ESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALD 318
+ L LVN + P KSL+ L ++N G +E+ LPSL ++S N L
Sbjct: 307 QHLELVNCKFG---QFPTLKLKSLKRLTFTSNK-GGNAFSEVD--LPSLEFLDLSRNGLS 360
Query: 319 ----------GSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEG 368
G+ + +++F ++ +S+N L E EHL NL+ +
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK---------QM 411
Query: 369 HMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGK-IPQWLGNLTG 427
FS +L L +L + H + SLE L + N+ +P L
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471
Query: 428 LQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRI-DGL 486
L ++ + + LE P AF L SLQ+L ++ N + S+PD I D L
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK--------------SVPDGIFDRL 517
Query: 487 LRLSHLILAHNNLEGEVP 504
L + L N + P
Sbjct: 518 TSLQKIWLHTNPWDCSCP 535
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 566 LTRIQTLNLSHNNLTGTIL-STFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAY 624
L+ ++ L ++ N+ L FT LR++ LDL +L P L++L V ++A
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 625 NNLSGKIPEMTTQFATFNESNYKGNPFLCGLP 656
N L + + + + NP+ C P
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 563 IGNLTRIQTLNLSHNNLTGTIL-STFTNLRHIESLDLYHNKLN 604
IG+L ++ LN++HN + L F+NL ++E LDL NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 80/189 (42%), Gaps = 21/189 (11%)
Query: 285 LDVSNNNFQGRIPAEIGDILPSLSSFNISMNALD----------GSIPSSFGNMNFLQIL 334
L++ +N Q +P + D L L+ ++S N L G+ + +++F ++
Sbjct: 33 LELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91
Query: 335 DLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEI 394
+S+N L E EHL NL+ + FS +L L +L + H
Sbjct: 92 TMSSNFLGLEQLEHLDFQHSNLK---------QMSEFSVFLSLRNLIYLDISHTHTRVAF 142
Query: 395 PQSLSKCLSLEGLHLNNNNLSGK-IPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQ 453
+ SLE L + N+ +P L L ++ + + LE P AF L SLQ
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202
Query: 454 ILGISDNNI 462
+L +S NN
Sbjct: 203 VLNMSHNNF 211
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 232 KLEDVDLSH--IKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSN 289
+LE +D H +K EF +L N +S + +A F + SL +L ++
Sbjct: 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA--FNGIFNGLSSLEVLKMAG 159
Query: 290 NNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHL 341
N+FQ +I L +L+ ++S L+ P++F +++ LQ+L++S+N+
Sbjct: 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
Query: 4 FSSLNTLCLMDNNLTEIVTTTTQELHNF-TNLEYLTL---DFSSL--HISLLQSIASIFP 57
+ LN+L ++D +L I+T+ QEL +F ++L +L L DF+ H S LQ I
Sbjct: 219 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ 278
Query: 58 SLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTAC 93
L + ++C QG P L +N C
Sbjct: 279 LLVEVERMECATPS--DKQGMP------VLSLNITC 306
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 105/244 (43%), Gaps = 23/244 (9%)
Query: 274 LPIHSHKSLRLLDVS--NNNFQGRIPAEIGDILPSLSSFNISMNALDGSI-PSSFGNMNF 330
+P S ++ R L + ++N RI A L L ++S NA S+ P++F +
Sbjct: 46 VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 105
Query: 331 LQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHF 390
L L L L E+ L G L+ L L +N L+ +L L+ L L N
Sbjct: 106 LHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR- 163
Query: 391 VEEIPQSLSKCL-SLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQL 449
+ +P+ + L SL+ L L+ N ++ P +L L + + N+L A L
Sbjct: 164 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL 223
Query: 450 DSLQILGISDNNI---SGSLPSYLSYNRLNG-------SIPDRIDG--LLRLSHLILAHN 497
+LQ L ++DN + P + + G S+P R+ G L R LA N
Sbjct: 224 RALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKR-----LAAN 278
Query: 498 NLEG 501
+L+G
Sbjct: 279 DLQG 282
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 61/158 (38%), Gaps = 16/158 (10%)
Query: 344 EIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEI-PQSLSKCL 402
+P C NL IL L +N L + L L L L DN + + P +
Sbjct: 45 HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 104
Query: 403 SLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNI 462
L LHL+ L P L LQY+ + +N L+ F L +L L + N I
Sbjct: 105 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 164
Query: 463 SGSLPSYLSYNRLNGSIPDR-IDGLLRLSHLILAHNNL 499
S S+P+R GL L L+L N +
Sbjct: 165 S--------------SVPERAFRGLHSLDRLLLHQNRV 188
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 563 IGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSV 622
+GNLT L L N ++ F L ++ L L+ N++ P +L L+ +
Sbjct: 151 LGNLTH---LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 207
Query: 623 AYNNLSGKIPEMTTQFATFNESNYKGNPFLC 653
NNLS E NP++C
Sbjct: 208 FANNLSALPTEALAPLRALQYLRLNDNPWVC 238
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 105/244 (43%), Gaps = 23/244 (9%)
Query: 274 LPIHSHKSLRLLDVS--NNNFQGRIPAEIGDILPSLSSFNISMNALDGSI-PSSFGNMNF 330
+P S ++ R L + ++N RI A L L ++S NA S+ P++F +
Sbjct: 47 VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106
Query: 331 LQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHF 390
L L L L E+ L G L+ L L +N L+ +L L+ L L N
Sbjct: 107 LHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR- 164
Query: 391 VEEIPQSLSKCL-SLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQL 449
+ +P+ + L SL+ L L+ N ++ P +L L + + N+L A L
Sbjct: 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL 224
Query: 450 DSLQILGISDNNI---SGSLPSYLSYNRLNG-------SIPDRIDG--LLRLSHLILAHN 497
+LQ L ++DN + P + + G S+P R+ G L R LA N
Sbjct: 225 RALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKR-----LAAN 279
Query: 498 NLEG 501
+L+G
Sbjct: 280 DLQG 283
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 61/158 (38%), Gaps = 16/158 (10%)
Query: 344 EIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEI-PQSLSKCL 402
+P C NL IL L +N L + L L L L DN + + P +
Sbjct: 46 HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105
Query: 403 SLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNI 462
L LHL+ L P L LQY+ + +N L+ F L +L L + N I
Sbjct: 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165
Query: 463 SGSLPSYLSYNRLNGSIPDR-IDGLLRLSHLILAHNNL 499
S S+P+R GL L L+L N +
Sbjct: 166 S--------------SVPERAFRGLHSLDRLLLHQNRV 189
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 563 IGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSV 622
+GNLT L L N ++ F L ++ L L+ N++ P +L L+ +
Sbjct: 152 LGNLTH---LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208
Query: 623 AYNNLSGKIPEMTTQFATFNESNYKGNPFLC 653
NNLS E NP++C
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWVC 239
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 124/302 (41%), Gaps = 54/302 (17%)
Query: 325 FGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNF-NLTKLSWL 383
F + L++L+L+ N + +I + G NL++L LS NL G ++S NF L K++++
Sbjct: 286 FETLKDLKVLNLAYNKI-NKIADEAFYGLDNLQVLNLS-YNLLGELYSSNFYGLPKVAYI 343
Query: 384 LLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSG-----KIPQWLGNLTGLQYIIIP---- 434
L+ NH Q+ L+ L L +N L+ IP L+G + + +P
Sbjct: 344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIF--LSGNKLVTLPKINL 401
Query: 435 --------ENHLEG-PIPVAFCQLDSLQILGISDNNISG----SLPS--------YLSYN 473
EN LE I ++ LQIL ++ N S PS +L N
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461
Query: 474 RLNGSIP-----DRIDGLLRLSHLILAHNNLEGEVPVXXXXXXXXXXXXXSDNKLHGLIP 528
L + D +GL L L L HN L P + N+L
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL----- 516
Query: 529 PCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTI-LSTF 587
T L + + L +D+S N+L+ P +L+ L+++HN LSTF
Sbjct: 517 -----TVLSHNDLPANLEILDISRNQLLAPNPDVFVSLS---VLDITHNKFICECELSTF 568
Query: 588 TN 589
N
Sbjct: 569 IN 570
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 136 LVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLT 174
L HLQ L++ +N L P +++T+LR L ++SN+LT
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 93/197 (47%), Gaps = 16/197 (8%)
Query: 269 AGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNM 328
A P +P + K LD+ +N +P++ L L ++ N L F +
Sbjct: 30 AIPSNIPADTKK----LDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL 84
Query: 329 NFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEG---HMFSKNFNLTKLSWLLL 385
L+ L +++N L +P + VNL L L N L+ +F +LTKL++L L
Sbjct: 85 KNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFD---SLTKLTYLSL 140
Query: 386 EDNHFVEEIPQSL-SKCLSLEGLHLNNNNLSGKIPQW-LGNLTGLQYIIIPENHLEGPIP 443
N ++ +P+ + K SL+ L L NN L ++P+ LT L+ + + N L+
Sbjct: 141 GYNE-LQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPE 198
Query: 444 VAFCQLDSLQILGISDN 460
AF L+ L++L + +N
Sbjct: 199 GAFDSLEKLKMLQLQEN 215
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 17/153 (11%)
Query: 25 TQELHNFTNLEYLTLDFSSLHISLLQSI-ASIFPSLKSLSMIDCKVNGVVRSQGFP--HF 81
++ H T L L L+ + L Q++ A IF LK+L + N + Q P F
Sbjct: 54 SKAFHRLTKLRLLYLNDNKL-----QTLPAGIFKELKNLETLWVTDNKL---QALPIGVF 105
Query: 82 KSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLC-PLVHLQ 140
L +N A + L+ + L+ + + F L+Y + G N + L +G+ L L+
Sbjct: 106 DQL----VNLAELRLDRNQLKSLPPRV-FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK 160
Query: 141 ELHMANNDLRGSLPWCLANMTSLRTLDVSSNQL 173
EL + NN L+ +T L+TL + +NQL
Sbjct: 161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 19/120 (15%)
Query: 519 SDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQI-GNLTRIQTLNLSHN 577
+DNKL L FD L L+ + L N+L +PP++ +LT++ L+L +N
Sbjct: 93 TDNKLQALPIGVFDQ--------LVNLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYN 143
Query: 578 NLTGTILSTFTNLRHIESLDLYHNKLNGKIP----CQLVELNALVVFSVAYNNLSGKIPE 633
L F L ++ L LY+N+L ++P +L EL L + NN ++PE
Sbjct: 144 ELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKL----DNNQLKRVPE 198
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 81/189 (42%), Gaps = 10/189 (5%)
Query: 296 IPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVN 355
+PA +L+ + NAL G ++F + L+ LDLS+N + G +
Sbjct: 46 VPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGH 105
Query: 356 LEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLS-LEGLHLNNNNL 414
L L L L+ L L +L L+DN+ ++ +P + + L L L L+ N +
Sbjct: 106 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNN-LQALPDNTFRDLGNLTHLFLHGNRI 164
Query: 415 SGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSY----- 469
L L +++ +NH+ P AF L L L + NN+S LP+
Sbjct: 165 PSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS-MLPAEVLVPL 223
Query: 470 --LSYNRLN 476
L Y RLN
Sbjct: 224 RSLQYLRLN 232
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 104/240 (43%), Gaps = 22/240 (9%)
Query: 276 IHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNA-LDGSIPSSFGNMNFLQIL 334
S ++L +L + +N G I A L L ++S NA L P++F + L L
Sbjct: 51 FQSCRNLTILWLHSNALAG-IDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTL 109
Query: 335 DLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEI 394
L L E+ L G L+ L L +NNL+ + +L L+ L L N + +
Sbjct: 110 HLDRCGLQ-ELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNR-IPSV 167
Query: 395 PQSLSKCL-SLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQ 453
P+ + L SL+ L L+ N+++ P +L L + + N+L L SLQ
Sbjct: 168 PEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQ 227
Query: 454 ILGISDNNI---SGSLPSYLSYNRLNGS-------IPDRIDG--LLRLSHLILAHNNLEG 501
L ++DN + P + + GS +P R+ G L R LA ++LEG
Sbjct: 228 YLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCNLPQRLAGRDLKR-----LAASDLEG 282
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 562 QIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVE-LNALVVF 620
Q+ NL+ +QTLNLSHN G F +E LDL +L+ P + L+ L V
Sbjct: 368 QLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVL 427
Query: 621 SVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCG 654
++ Y L + N KGN F G
Sbjct: 428 NLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDG 461
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 9/119 (7%)
Query: 545 LSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLN 604
L ++L N+L G P + IQ L L N + F L +++L+LY N+++
Sbjct: 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115
Query: 605 GKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNE----SNYKGNPFLCGLPLPI 659
+P LN+L ++A N + A F E + G CG P +
Sbjct: 116 CVMPGSFEHLNSLTSLNLASNPFN-----CNCHLAWFAEWLRKKSLNGGAARCGAPSKV 169
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 36/91 (39%)
Query: 563 IGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSV 622
G L + L L N LTG + F HI+ L L NK+ + L+ L ++
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 623 AYNNLSGKIPEMTTQFATFNESNYKGNPFLC 653
N +S +P + N NPF C
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 27/132 (20%)
Query: 5 SSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLD-----------FSSLHI------- 46
+SLNTL + N+ + T + N TNL +L L F +LH
Sbjct: 448 TSLNTLKMAGNSFKD--NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505
Query: 47 --SLLQSIASIFPSLKSLSMIDCKVNGVVRSQG-FPHF-KSLEYLDM---NTACIALNAS 99
+LL +S + L SLS +DC N + S+G HF KSL + ++ + ACI +
Sbjct: 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQK 565
Query: 100 FLQIIGASMPFL 111
FLQ + FL
Sbjct: 566 FLQWVKEQKQFL 577
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 5/147 (3%)
Query: 294 GRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGC 353
++P DI S + ++S N L SF N + LQ LDLS + I + G
Sbjct: 24 SKVP---DDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGL 79
Query: 354 VNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNN 413
+L L+L+ N ++ LT L L+ + + + ++L+ L++ +N
Sbjct: 80 HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF 139
Query: 414 L-SGKIPQWLGNLTGLQYIIIPENHLE 439
+ S K+P + NLT L ++ + N+++
Sbjct: 140 IHSCKLPAYFSNLTNLVHVDLSYNYIQ 166
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 566 LTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVF--SVA 623
L R+Q LN+SHNNL S + L + +LD N++ L F S+A
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-------TSKGILQHFPKSLA 548
Query: 624 YNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPLPICRSPVTM 666
+ NL+ + F + + FL + C +PV M
Sbjct: 549 FFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATPVEM 591
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 27/132 (20%)
Query: 5 SSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLD-----------FSSLHI------- 46
+SLNTL + N+ + T + N TNL +L L F +LH
Sbjct: 443 TSLNTLKMAGNSFKD--NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 500
Query: 47 --SLLQSIASIFPSLKSLSMIDCKVNGVVRSQG-FPHF-KSLEYLDM---NTACIALNAS 99
+LL +S + L SLS +DC N + S+G HF KSL + ++ + ACI +
Sbjct: 501 HNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQK 560
Query: 100 FLQIIGASMPFL 111
FLQ + FL
Sbjct: 561 FLQWVKEQKQFL 572
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 5/147 (3%)
Query: 294 GRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGC 353
++P DI S + ++S N L SF N + LQ LDLS + I + G
Sbjct: 19 SKVP---DDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGL 74
Query: 354 VNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNN 413
+L L+L+ N ++ LT L L+ + + + ++L+ L++ +N
Sbjct: 75 HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF 134
Query: 414 L-SGKIPQWLGNLTGLQYIIIPENHLE 439
+ S K+P + NLT L ++ + N+++
Sbjct: 135 IHSCKLPAYFSNLTNLVHVDLSYNYIQ 161
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 566 LTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVF--SVA 623
L R+Q LN+SHNNL S + L + +LD N++ L F S+A
Sbjct: 491 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-------TSKGILQHFPKSLA 543
Query: 624 YNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPLPICRSPVTM 666
+ NL+ + F + + FL + C +PV M
Sbjct: 544 FFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATPVEM 586
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 23/190 (12%)
Query: 2 GSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKS 61
G S+ L LM+NN+ I T + LH+ L+ + + +AS L +
Sbjct: 72 GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS----LNT 127
Query: 62 LSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACI------ALNA--SFLQIIGASMPFLKY 113
L + D + V+ S F + L L + I A N S +++ + L+Y
Sbjct: 128 LELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY 186
Query: 114 LSLSYFTFGTNSSRILDQGLC---------PLVHLQELHMANNDLRGSLPWCLANMTSLR 164
+S F G + + L+ G+C PLV L+EL M+ N P ++SL+
Sbjct: 187 ISEGAFE-GLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK 245
Query: 165 TLDVSSNQLT 174
L V ++Q++
Sbjct: 246 KLWVMNSQVS 255
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 95/220 (43%), Gaps = 22/220 (10%)
Query: 283 RLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLT 342
R L++ NN Q I A+ L L + N++ +F + L L+L +N LT
Sbjct: 78 RYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136
Query: 343 GEIPEHLAIGCVNLEILVLSNNNLEG---HMFSKNFNLTKLSWLLLEDNHFVEEIPQSLS 399
IP L L L NN +E + F++ +L +L L+ ++ E +
Sbjct: 137 -VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE--GAFE 193
Query: 400 KCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISD 459
+L+ L+L N+ +P L L GL+ + + NH P +F L SL+ L + +
Sbjct: 194 GLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251
Query: 460 NNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNL 499
+ +S + N DGL L L LAHNNL
Sbjct: 252 SQVS-----LIERNAF--------DGLASLVELNLAHNNL 278
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 566 LTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLN 604
L + LNL+HNNL+ FT LR++ L L+HN N
Sbjct: 265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 35.8 bits (81), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 73/173 (42%), Gaps = 24/173 (13%)
Query: 445 AFCQLDSLQILGISDNNISGSLPSYL-----SYNRLNGSIPDRI--------DGLLRLSH 491
AF L L+ L + +N I S+PSY S RL+ R+ +GL L +
Sbjct: 131 AFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189
Query: 492 LILAHNNLEGEVPVXXXXXXXXXXXXXSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLS 551
L LA NL E+P S N L + P F +H +++ + S I +
Sbjct: 190 LNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQG-LMHLQKLWMIQSQIQVI 246
Query: 552 CNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLN 604
NL + +NL+HNNLT FT L H+E + L+HN N
Sbjct: 247 ERN-------AFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 561 PQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNA---- 616
P + L ++ L+LS N+L+ +F L H++ L + +++ Q++E NA
Sbjct: 201 PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI------QVIERNAFDNL 254
Query: 617 --LVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLC 653
LV ++A+NNL+ ++ T + NP+ C
Sbjct: 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 73/174 (41%), Gaps = 10/174 (5%)
Query: 305 PSLSSF---NISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVN-LEILV 360
PS SSF N + N S+ + LQ L L N L L ++ LE L
Sbjct: 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD 409
Query: 361 LSNNNLEGHMFSKNFNLTKLSWLL-LEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIP 419
+S N+L H + + + +L L N + + L + + LH NN IP
Sbjct: 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLH---NNRIMSIP 466
Query: 420 QWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLP--SYLS 471
+ + +L LQ + + N L+ F +L SLQ + + DN + P YLS
Sbjct: 467 KDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLS 520
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 561 PQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNAL 617
P I L+ ++ L LSHN + F + +E LD+ HN+L C + L L
Sbjct: 70 PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHL 126
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 74/152 (48%), Gaps = 13/152 (8%)
Query: 284 LLDVSNNNFQGRIPAEIGDI-LPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLT 342
LLD+S+NN R+ AE L +L S +S N L+ +F + L+ LDLS+NHL
Sbjct: 43 LLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL- 100
Query: 343 GEIPEHLAIGCVNLEILVLSNNNL---EGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLS 399
+ E L LE+L+L NN++ + + F L KL + + F E+ + +
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN 160
Query: 400 KCLSLEGLHLNNNNLSG-------KIPQWLGN 424
K L L L++N L K+P W+ N
Sbjct: 161 KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN 192
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 110/236 (46%), Gaps = 38/236 (16%)
Query: 258 LESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNAL 317
LESL +SL LP +SL+ L V NNN + + D+ P L +S N L
Sbjct: 93 LESLVASCNSLTELPELP----QSLKSLLVDNNNLKA-----LSDLPPLLEYLGVSNNQL 143
Query: 318 DGSIPSSFGNMNFLQILDLSNNHLTG--EIP---EHLAIGCVNLEILV-LSNNNLEGHMF 371
+ +P N +FL+I+D+ NN L ++P E +A G LE L L N ++
Sbjct: 144 EK-LPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIY 201
Query: 372 SKNFNLTKLSWL------LLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNL 425
+ N +L KL L ++ N+ +EE+P+ L L ++ +NNL +P +L
Sbjct: 202 ADNNSLKKLPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYA-DNNLLKTLPDLPPSL 259
Query: 426 TGLQYIIIPENHLEGPIPVAFCQL-DSLQILGISDNNISG--SLPSYLSYNRLNGS 478
L + +N+L +L SL L +S+N SG LP L Y LN S
Sbjct: 260 EALN---VRDNYL-----TDLPELPQSLTFLDVSENIFSGLSELPPNLYY--LNAS 305
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 383 LLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPI 442
L L+ N F +P+ LS L + L+NN +S Q N+T L +I+ N L
Sbjct: 36 LYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 443 PVAFCQLDSLQILGISDNNIS 463
P F L SL++L + N+IS
Sbjct: 95 PRTFDGLKSLRLLSLHGNDIS 115
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 559 IPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALV 618
+P ++ N + ++LS+N ++ +F+N+ + +L L +N+L P L +L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 619 VFSVAYNNLSGKIPEMT-TQFATFNESNYKGNPFLC 653
+ S+ N++S +PE + + NP C
Sbjct: 106 LLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYC 140
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 104/218 (47%), Gaps = 20/218 (9%)
Query: 233 LEDVDLSHIKMN-GEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHK---SLRLLDVS 288
L ++DLSH + + N L N + L+SL+L S P L + K L LLD++
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNL---SYNEPLSLKTEAFKECPQLELLDLA 408
Query: 289 NNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHL-TGEIPE 347
+ + L L N+S + LD S F + LQ L+L NH G I +
Sbjct: 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK 468
Query: 348 HLAIGCV-NLEILVLSNNNL---EGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLS 403
++ + LEILVLS +L + H F+ +L ++ + L N ++LS
Sbjct: 469 TNSLQTLGRLEILVLSFCDLSSIDQHAFT---SLKMMNHVDLSHNRLTSSSIEALSH--- 522
Query: 404 LEGLHLN--NNNLSGKIPQWLGNLTGLQYIIIPENHLE 439
L+G++LN +N++S +P L L+ + I + +N L+
Sbjct: 523 LKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 563 IGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSV 622
+ L R++ L LS +L+ FT+L+ + +DL HN+L L L + ++
Sbjct: 472 LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG-IYLNL 530
Query: 623 AYNNLSGKIPEMTTQFATFNESNYKGNPFLC 653
A N++S +P + + N + NP C
Sbjct: 531 ASNHISIILPSLLPILSQQRTINLRQNPLDC 561
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 12/184 (6%)
Query: 257 KLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNA 316
KL+ L + + L +P + SL L + +N + ++P + L +++ + N
Sbjct: 103 KLQKLYISKNHLV---EIPPNLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNP 158
Query: 317 LD--GSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKN 374
L+ G P +F + L L +S LTG IP+ L L L L +N ++
Sbjct: 159 LENSGFEPGAFDGLK-LNYLRISEAKLTG-IPKDLP---ETLNELHLDHNKIQAIELEDL 213
Query: 375 FNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIP 434
+KL L L N SLS +L LHL+NN LS ++P L +L LQ + +
Sbjct: 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH 272
Query: 435 ENHL 438
N++
Sbjct: 273 TNNI 276
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 17/148 (11%)
Query: 230 QNKLEDVDLSHIKMNGEFP--NWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDV 287
Q L+ +L+ ++++G P L ++ +L+SL L+ +L +L +LDV
Sbjct: 59 QLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP-----------ALTVLDV 107
Query: 288 SNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPE 347
S N +P L L + N L P L+ L L+NN LT E+P
Sbjct: 108 SFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPA 165
Query: 348 HLAIGCVNLEILVLSNNNLEGHMFSKNF 375
L G NL+ L+L N+L + K F
Sbjct: 166 GLLNGLENLDTLLLQENSL--YTIPKGF 191
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 101 LQIIGASMPFLKYLSLSYFTFGTNSSRILDQG-LCPLVHLQELHMANNDLRGSLPWCLAN 159
L ++G ++P L L +S+ N L G L L LQEL++ N+L+ P L
Sbjct: 92 LPLLGQTLPALTVLDVSF-----NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 160 MTSLRTLDVSSNQLT 174
L L +++NQLT
Sbjct: 147 TPKLEKLSLANNQLT 161
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 17/148 (11%)
Query: 230 QNKLEDVDLSHIKMNGEFP--NWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDV 287
Q L+ +L+ ++++G P L ++ +L+SL L+ +L +L +LDV
Sbjct: 59 QLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP-----------ALTVLDV 107
Query: 288 SNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPE 347
S N +P L L + N L P L+ L L+NN LT E+P
Sbjct: 108 SFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPA 165
Query: 348 HLAIGCVNLEILVLSNNNLEGHMFSKNF 375
L G NL+ L+L N+L + K F
Sbjct: 166 GLLNGLENLDTLLLQENSL--YTIPKGF 191
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 101 LQIIGASMPFLKYLSLSYFTFGTNSSRILDQG-LCPLVHLQELHMANNDLRGSLPWCLAN 159
L ++G ++P L L +S+ N L G L L LQEL++ N+L+ P L
Sbjct: 92 LPLLGQTLPALTVLDVSF-----NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 160 MTSLRTLDVSSNQLT 174
L L +++NQLT
Sbjct: 147 TPKLEKLSLANNQLT 161
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 352 GCVNLEILVLSNNNLEGHMFSKNF--NLTKLSWLLLEDNHFVEEIPQSL 398
G NLE+L L+ NL+G + S NF LT L L+L DN+ + P S
Sbjct: 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 91/368 (24%), Positives = 147/368 (39%), Gaps = 79/368 (21%)
Query: 5 SSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSM 64
+S+ L L +N L +T L +TNL L L +++LH + S PSL+ LS+
Sbjct: 222 TSIQNLSLANNQLLATSESTFSGLK-WTNLTQLDLSYNNLH-DVGNGSFSYLPSLRYLSL 279
Query: 65 IDCKVNGVVR--SQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFG 122
+ N + R + F +L YL + A + S AS P + S +
Sbjct: 280 ---EYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSL-----ASHPNIDDFSFQW---- 327
Query: 123 TNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPL 182
L +L+ L+M +N++ + + SL+ L S+S +
Sbjct: 328 -------------LKYLEYLNMDDNNIPSTKSNTFTGLVSLKYL---------SLSKTFT 365
Query: 183 ILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKF-LHHQNKLEDVDLSHI 241
L NE + S LT L+L+ + + F Q ++ D+ L+ I
Sbjct: 366 SLQTLTNETFVSLAHSPLLT--------LNLTKNHISKIANGTFSWLGQLRILDLGLNEI 417
Query: 242 KMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIG 301
+ W L F + + +K L+L S ++F
Sbjct: 418 EQKLSGQEW---------------RGLRNIFEIYLSYNKYLQL---STSSFA-------- 451
Query: 302 DILPSLSSF---NISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEI 358
++PSL +++ +D S PS F + L ILDLSNN++ I E L G NLEI
Sbjct: 452 -LVPSLQRLMLRRVALKNVDIS-PSPFRPLRNLTILDLSNNNI-ANINEDLLEGLENLEI 508
Query: 359 LVLSNNNL 366
L +NNL
Sbjct: 509 LDFQHNNL 516
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 36/185 (19%)
Query: 2 GSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKS 61
GSFS L +L + I + + + +NL YL+L + S+ S+AS P++
Sbjct: 266 GSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSV--SLAS-HPNIDD 322
Query: 62 LSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNAS--FLQIIGASMPFLKYLSLSYF 119
S F K LEYL+M+ I S F ++ LKYLSLS
Sbjct: 323 FS--------------FQWLKYLEYLNMDDNNIPSTKSNTFTGLVS-----LKYLSLSK- 362
Query: 120 TFGTNSSRILDQGLCPLVH--LQELHMANNDL----RGSLPWCLANMTSLRTLDVSSNQL 173
TF T+ + ++ L H L L++ N + G+ W + LR LD+ N++
Sbjct: 363 TF-TSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSW----LGQLRILDLGLNEI 417
Query: 174 TGSIS 178
+S
Sbjct: 418 EQKLS 422
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 17/148 (11%)
Query: 230 QNKLEDVDLSHIKMNGEFP--NWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDV 287
Q L+ +L+ ++++G P L ++ +L+SL L+ +L +L +LDV
Sbjct: 59 QLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP-----------ALTVLDV 107
Query: 288 SNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPE 347
S N +P L L + N L P L+ L L+NN LT E+P
Sbjct: 108 SFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPA 165
Query: 348 HLAIGCVNLEILVLSNNNLEGHMFSKNF 375
L G NL+ L+L N+L + K F
Sbjct: 166 GLLNGLENLDTLLLQENSL--YTIPKGF 191
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 101 LQIIGASMPFLKYLSLSYFTFGTNSSRILDQG-LCPLVHLQELHMANNDLRGSLPWCLAN 159
L ++G ++P L L +S+ N L G L L LQEL++ N+L+ P L
Sbjct: 92 LPLLGQTLPALTVLDVSF-----NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 160 MTSLRTLDVSSNQLT 174
L L +++NQLT
Sbjct: 147 TPKLEKLSLANNQLT 161
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 352 GCVNLEILVLSNNNLEGHMFSKNF--NLTKLSWLLLEDNHFVEEIPQSL 398
G NLE+L L+ NL+G + S NF LT L L+L DN+ + P S
Sbjct: 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 304 LPSLSSFNISMNALDGSIPSS-FGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLS 362
L L N+S N L GSI S F N++ L++LDLS NH+ + + +G NL+ L L
Sbjct: 322 LTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALD 379
Query: 363 NNNLE 367
N L+
Sbjct: 380 TNQLK 384
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 549 DLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIP 608
DLS +K+ + + T ++ L L+ N + + F L H+ L+L N L G I
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSID 339
Query: 609 CQLVE-LNALVVFSVAYNNLSG 629
++ E L+ L V ++YN++
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRA 361
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 17/148 (11%)
Query: 230 QNKLEDVDLSHIKMNGEFP--NWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDV 287
Q L+ +L+ ++++G P L ++ +L+SL L+ +L +L +LDV
Sbjct: 59 QLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP-----------ALTVLDV 107
Query: 288 SNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPE 347
S N +P L L + N L P L+ L L+NN LT E+P
Sbjct: 108 SFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPA 165
Query: 348 HLAIGCVNLEILVLSNNNLEGHMFSKNF 375
L G NL+ L+L N+L + K F
Sbjct: 166 GLLNGLENLDTLLLQENSL--YTIPKGF 191
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 101 LQIIGASMPFLKYLSLSYFTFGTNSSRILDQG-LCPLVHLQELHMANNDLRGSLPWCLAN 159
L ++G ++P L L +S+ N L G L L LQEL++ N+L+ P L
Sbjct: 92 LPLLGQTLPALTVLDVSF-----NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 160 MTSLRTLDVSSNQLT 174
L L +++NQLT
Sbjct: 147 TPKLEKLSLANNQLT 161
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 17/148 (11%)
Query: 230 QNKLEDVDLSHIKMNGEFP--NWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDV 287
Q L+ +L+ ++++G P L ++ +L+SL L+ +L +L +LDV
Sbjct: 59 QLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP-----------ALTVLDV 107
Query: 288 SNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPE 347
S N +P L L + N L P L+ L L+NN+LT E+P
Sbjct: 108 SFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA 165
Query: 348 HLAIGCVNLEILVLSNNNLEGHMFSKNF 375
L G NL+ L+L N+L + K F
Sbjct: 166 GLLNGLENLDTLLLQENSL--YTIPKGF 191
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 534 TALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHI 593
T L L +L +DLS N+L +P L + L++S N LT L L +
Sbjct: 68 TKLQVDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 594 ESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLS 628
+ L L N+L P L L S+A NNL+
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 86/198 (43%), Gaps = 22/198 (11%)
Query: 302 DILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVL 361
D + +LS+FN + ++G +N L L+L +N +T P LE L
Sbjct: 47 DGIATLSAFNTGVTTIEG-----IQYLNNLIGLELKDNQITDLTPLKNLTKITELE---L 98
Query: 362 SNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQW 421
S N L+ S L + L L + P L+ +L+ L+L+ N ++ P
Sbjct: 99 SGNPLKN--VSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP-- 152
Query: 422 LGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNIS-----GSLPSYLSYNRLN 476
L LT LQY+ I N + P+A L L L DN IS SLP+ + + +
Sbjct: 153 LAGLTNLQYLSIGNNQVNDLTPLA--NLSKLTTLRADDNKISDISPLASLPNLIEVHLKD 210
Query: 477 GSIPDRIDGLLRLSHLIL 494
I D + L LS+L +
Sbjct: 211 NQISD-VSPLANLSNLFI 227
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 17/148 (11%)
Query: 230 QNKLEDVDLSHIKMNGEFP--NWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDV 287
Q L+ +L+ ++++G P L ++ +L+SL L+ +L +L +LDV
Sbjct: 60 QLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP-----------ALTVLDV 108
Query: 288 SNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPE 347
S N +P L L + N L P L+ L L+NN+LT E+P
Sbjct: 109 SFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA 166
Query: 348 HLAIGCVNLEILVLSNNNLEGHMFSKNF 375
L G NL+ L+L N+L + K F
Sbjct: 167 GLLNGLENLDTLLLQENSL--YTIPKGF 192
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 534 TALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHI 593
T L L +L +DLS N+L +P L + L++S N LT L L +
Sbjct: 69 TKLQVDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 127
Query: 594 ESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLS 628
+ L L N+L P L L S+A NNL+
Sbjct: 128 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 162
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 17/148 (11%)
Query: 230 QNKLEDVDLSHIKMNGEFP--NWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDV 287
Q L+ +L+ ++++G P L ++ +L+SL L+ +L +L +LDV
Sbjct: 59 QLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP-----------ALTVLDV 107
Query: 288 SNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPE 347
S N +P L L + N L P L+ L L+NN+LT E+P
Sbjct: 108 SFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA 165
Query: 348 HLAIGCVNLEILVLSNNNLEGHMFSKNF 375
L G NL+ L+L N+L + K F
Sbjct: 166 GLLNGLENLDTLLLQENSL--YTIPKGF 191
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 534 TALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHI 593
T L L +L +DLS N+L +P L + L++S N LT L L +
Sbjct: 68 TKLQVDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 594 ESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLS 628
+ L L N+L P L L S+A NNL+
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 140/323 (43%), Gaps = 57/323 (17%)
Query: 59 LKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSY 118
L+S++ + V QG + +LEYL++N QI S P + L+
Sbjct: 43 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGN---------QITDIS-PLSNLVKLTN 92
Query: 119 FTFGTNSSRILD-QGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSI 177
GTN +I D L L +L+EL++ +++ P LAN+T +L++ +N +
Sbjct: 93 LYIGTN--KITDISALQNLTNLRELYLNEDNISDISP--LANLTKXYSLNLGANHNLSDL 148
Query: 178 SSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDV- 236
SPL + T + LT ++K ++ + D + L++ N++ED+
Sbjct: 149 --SPL----------SNXTGLNYLTVTESKVKDVTPIANLTD--LYSLSLNY-NQIEDIS 193
Query: 237 ---DLSHIKMNGEFPNWLLE-----NNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVS 288
L+ + + N + + N T+L SL + N+ + P+ + L L++
Sbjct: 194 PLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNKITDLS--PLANLSQLTWLEIG 251
Query: 289 NNNFQGRIPAEIGDI-----LPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTG 343
N +I DI L L N+ N + S S N++ L L L+NN L
Sbjct: 252 TN--------QISDINAVKDLTKLKXLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGN 301
Query: 344 EIPEHLAIGCVNLEILVLSNNNL 366
E E + G NL L LS N++
Sbjct: 302 EDXEVIG-GLTNLTTLFLSQNHI 323
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 17/148 (11%)
Query: 230 QNKLEDVDLSHIKMNGEFP--NWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDV 287
Q L+ +L+ ++++G P L ++ +L+SL L+ +L +L +LDV
Sbjct: 59 QLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP-----------ALTVLDV 107
Query: 288 SNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPE 347
S N +P L L + N L P L+ L L+NN+LT E+P
Sbjct: 108 SFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA 165
Query: 348 HLAIGCVNLEILVLSNNNLEGHMFSKNF 375
L G NL+ L+L N+L + K F
Sbjct: 166 GLLNGLENLDTLLLQENSL--YTIPKGF 191
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 534 TALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHI 593
T L L +L +DLS N+L +P L + L++S N LT L L +
Sbjct: 68 TKLQVDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 594 ESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLS 628
+ L L N+L P L L S+A NNL+
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 17/148 (11%)
Query: 230 QNKLEDVDLSHIKMNGEFP--NWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDV 287
Q L+ +L+ ++++G P L ++ +L+SL L+ +L +L +LDV
Sbjct: 59 QLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP-----------ALTVLDV 107
Query: 288 SNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPE 347
S N +P L L + N L P L+ L L+NN+LT E+P
Sbjct: 108 SFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA 165
Query: 348 HLAIGCVNLEILVLSNNNLEGHMFSKNF 375
L G NL+ L+L N+L + K F
Sbjct: 166 GLLNGLENLDTLLLQENSL--YTIPKGF 191
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 534 TALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHI 593
T L L +L +DLS N+L +P L + L++S N LT L L +
Sbjct: 68 TKLQVDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 594 ESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLS 628
+ L L N+L P L L S+A NNL+
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 17/148 (11%)
Query: 230 QNKLEDVDLSHIKMNGEFP--NWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDV 287
Q L+ +L+ ++++G P L ++ +L+SL L+ +L +L +LDV
Sbjct: 59 QLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP-----------ALTVLDV 107
Query: 288 SNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPE 347
S N +P L L + N L P L+ L L+NN LT E+P
Sbjct: 108 SFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPA 165
Query: 348 HLAIGCVNLEILVLSNNNLEGHMFSKNF 375
L G NL+ L+L N+L + K F
Sbjct: 166 GLLNGLENLDTLLLQENSL--YTIPKGF 191
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 534 TALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHI 593
T L L +L +DLS N+L +P L + L++S N LT L L +
Sbjct: 68 TKLQVDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 594 ESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLS 628
+ L L N+L P L L S+A N+L+
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT 161
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 145/614 (23%), Positives = 240/614 (39%), Gaps = 93/614 (15%)
Query: 107 SMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTL 166
+P LK L+L + S++ D+ +L ELH+ +N ++ +L TL
Sbjct: 76 KLPMLKVLNLQH----NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 131
Query: 167 DVSSNQLTGSISSSPLILDAY------NNEINAEITESHSLTAPNFQLKSLSLSSGYEDG 220
D+S N L+ + + + L+ NN+I A +E + A N LK L LSS
Sbjct: 132 DLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA-NSSLKKLELSSNQIKE 190
Query: 221 VTFPKFLHHQNKLEDVDLSHIKMNGEFPNWL-LE-NNTKLESLSLVNDSLAGPFRLPIHS 278
+ P H +L + L+++++ L LE NT + +LSL N L+
Sbjct: 191 FS-PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 249
Query: 279 HK--SLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALD------------------ 318
K +L +LD+S NN + + LP L F + N +
Sbjct: 250 LKWTNLTMLDLSYNNL-NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 308
Query: 319 -----------GSIPS----SFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSN 363
S+P SF + L+ L++ +N + G I ++ G +NL+ L LSN
Sbjct: 309 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSN 367
Query: 364 NNLEGHMFSKNFNLTKLSWLLLEDN--HFVEEIPQSLSKCLS--------LEGLHLNNNN 413
+ F+ LT +++ L + H + +SK S LE L L N
Sbjct: 368 S------FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 421
Query: 414 LSGKI--PQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQIL---GISDNNISGSLPS 468
+ ++ +W G L + I + N +F + SLQ L ++ N+ S
Sbjct: 422 IGQELTGQEWRG-LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP 480
Query: 469 Y----------LSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVXXXXXXXXXXXXX 518
+ LS N + D ++GL +L L L HNNL
Sbjct: 481 FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL 540
Query: 519 SDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQI-GNLTRIQTLNLSHN 577
S + L FD + + L L IDL N L +P + N +++LNL N
Sbjct: 541 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL-NTLPASVFNNQVSLKSLNLQKN 599
Query: 578 NLTGTILSTF-TNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTT 636
+T F R++ LD+ N + C+ ++ F N IPE+++
Sbjct: 600 LITSVEKKVFGPAFRNLTELDMRFNPFD--CTCE-----SIAWFVNWINETHTNIPELSS 652
Query: 637 QFATFNESNYKGNP 650
+ +Y G P
Sbjct: 653 HYLCNTPPHYHGFP 666
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 567 TRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNN 626
T I LNL+HN L + FT + SLD+ N ++ P +L L V ++ +N
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 627 LSGKIPEMTTQFAT 640
LS ++ + T F T
Sbjct: 90 LS-QLSDKTFAFCT 102
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 112/271 (41%), Gaps = 35/271 (12%)
Query: 364 NNLEGHMFSKN--------FNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLS 415
NNL FS N NLTKL +L+ +N + P L+ +L GL L NN ++
Sbjct: 63 NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 416 GKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLP--SYLSYN 473
P L NLT L + + N + A L SLQ L S N ++ P + +
Sbjct: 121 DIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKPLANLTTLE 176
Query: 474 RLNGSIPDRID-----GLLRLSHLILAHNNLEGEVPVXXXXXXXXXXXXXSDNKLHGLIP 528
RL+ S D L L LI +N + P+ + K G +
Sbjct: 177 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLA 236
Query: 529 PCFDNTAL----HERRVLSLLSGI------DLSCNKLIGDIPPQIGNLTRIQTLNLSHNN 578
+ T L ++ L+ LSG+ L N+ I +I P G LT + L L+ N
Sbjct: 237 SLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ-ISNISPLAG-LTALTNLELNENQ 294
Query: 579 LTGTILSTFTNLRHIESLDLYHNKLNGKIPC 609
L +S +NL+++ L LY N ++ P
Sbjct: 295 LED--ISPISNLKNLTYLTLYFNNISDISPV 323
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 94/354 (26%), Positives = 152/354 (42%), Gaps = 43/354 (12%)
Query: 136 LVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEI 195
L L ++ M NN + P LAN+T+L L + +NQ+T +D N N
Sbjct: 84 LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD--------IDPLKNLTNLNR 133
Query: 196 TESHSLTAPNFQ----LKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWL 251
E S T + L SL S + VT K L + LE +D+S K++ +
Sbjct: 134 LELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDIS---V 190
Query: 252 LENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDI--LPSLSS 309
L T LESL N+ ++ L I ++ L L ++ N + +IG + L +L+
Sbjct: 191 LAKLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQLK-----DIGTLASLTNLTD 243
Query: 310 FNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGH 369
+++ N + P + L L L N ++ P NLE L+ N LE
Sbjct: 244 LDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLE---LNENQLED- 297
Query: 370 MFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQ 429
S NL L++L L N+ + P +S L+ L NN +S L NLT +
Sbjct: 298 -ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNIN 352
Query: 430 YIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRI 483
++ N + P+A L + LG++D + + +Y + N SIP+ +
Sbjct: 353 WLSAGHNQISDLTPLA--NLTRITQLGLNDQAWTNAPVNY----KANVSIPNTV 400
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 132 GLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLT 174
L L LQ+L ++N + P LAN+T+L LD+SSN+++
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVS 186
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 32.3 bits (72), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 112/271 (41%), Gaps = 35/271 (12%)
Query: 364 NNLEGHMFSKN--------FNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLS 415
NNL FS N NLTKL +L+ +N + P L+ +L GL L NN ++
Sbjct: 63 NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 416 GKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLP--SYLSYN 473
P L NLT L + + N + A L SLQ L S N ++ P + +
Sbjct: 121 DIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKPLANLTTLE 176
Query: 474 RLNGSIPDRID-----GLLRLSHLILAHNNLEGEVPVXXXXXXXXXXXXXSDNKLHGLIP 528
RL+ S D L L LI +N + P+ + K G +
Sbjct: 177 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLA 236
Query: 529 PCFDNTAL----HERRVLSLLSGI------DLSCNKLIGDIPPQIGNLTRIQTLNLSHNN 578
+ T L ++ L+ LSG+ L N+ I +I P G LT + L L+ N
Sbjct: 237 SLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ-ISNISPLAG-LTALTNLELNENQ 294
Query: 579 LTGTILSTFTNLRHIESLDLYHNKLNGKIPC 609
L +S +NL+++ L LY N ++ P
Sbjct: 295 LED--ISPISNLKNLTYLTLYFNNISDISPV 323
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 94/354 (26%), Positives = 153/354 (43%), Gaps = 43/354 (12%)
Query: 136 LVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEI 195
L L ++ M NN + P LAN+T+L L + +NQ+T +D N N
Sbjct: 84 LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD--------IDPLKNLTNLNR 133
Query: 196 TESHSLTAPNFQ----LKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWL 251
E S T + L SL S + VT K L + LE +D+S K++ +
Sbjct: 134 LELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDIS---V 190
Query: 252 LENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDI--LPSLSS 309
L T LESL N+ ++ L I ++ L L ++ N + +IG + L +L+
Sbjct: 191 LAKLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQLK-----DIGTLASLTNLTD 243
Query: 310 FNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGH 369
+++ N + P + L L L N ++ P NLE L+ N LE
Sbjct: 244 LDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLE---LNENQLED- 297
Query: 370 MFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQ 429
S NL L++L L N+ + P +S L+ L +NN +S L NLT +
Sbjct: 298 -ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV--SSLANLTNIN 352
Query: 430 YIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRI 483
++ N + P+A L + LG++D + + +Y + N SIP+ +
Sbjct: 353 WLSAGHNQISDLTPLA--NLTRITQLGLNDQAWTNAPVNY----KANVSIPNTV 400
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 132 GLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLT 174
L L LQ+L ++N + P LAN+T+L LD+SSN+++
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVS 186
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 112/271 (41%), Gaps = 35/271 (12%)
Query: 364 NNLEGHMFSKN--------FNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLS 415
NNL FS N NLTKL +L+ +N + P L+ +L GL L NN ++
Sbjct: 63 NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 416 GKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLP--SYLSYN 473
P L NLT L + + N + A L SLQ L S N ++ P + +
Sbjct: 121 DIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKPLANLTTLE 176
Query: 474 RLNGSIPDRID-----GLLRLSHLILAHNNLEGEVPVXXXXXXXXXXXXXSDNKLHGLIP 528
RL+ S D L L LI +N + P+ + K G +
Sbjct: 177 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLA 236
Query: 529 PCFDNTAL----HERRVLSLLSGI------DLSCNKLIGDIPPQIGNLTRIQTLNLSHNN 578
+ T L ++ L+ LSG+ L N+ I +I P G LT + L L+ N
Sbjct: 237 SLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ-ISNISPLAG-LTALTNLELNENQ 294
Query: 579 LTGTILSTFTNLRHIESLDLYHNKLNGKIPC 609
L +S +NL+++ L LY N ++ P
Sbjct: 295 LED--ISPISNLKNLTYLTLYFNNISDISPV 323
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 132 GLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLT 174
L L LQ+L+ ++N + P LAN+T+L LD+SSN+++
Sbjct: 146 ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVS 186
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 93/354 (26%), Positives = 152/354 (42%), Gaps = 43/354 (12%)
Query: 136 LVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEI 195
L L ++ M NN + P LAN+T+L L + +NQ+T +D N N
Sbjct: 84 LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD--------IDPLKNLTNLNR 133
Query: 196 TESHSLTAPNFQ----LKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWL 251
E S T + L SL + + VT K L + LE +D+S K++ +
Sbjct: 134 LELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDIS---V 190
Query: 252 LENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDI--LPSLSS 309
L T LESL N+ ++ L I ++ L L ++ N + +IG + L +L+
Sbjct: 191 LAKLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQLK-----DIGTLASLTNLTD 243
Query: 310 FNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGH 369
+++ N + P + L L L N ++ P NLE L+ N LE
Sbjct: 244 LDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLE---LNENQLED- 297
Query: 370 MFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQ 429
S NL L++L L N+ + P +S L+ L NN +S L NLT +
Sbjct: 298 -ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNIN 352
Query: 430 YIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRI 483
++ N + P+A L + LG++D + + +Y + N SIP+ +
Sbjct: 353 WLSAGHNQISDLTPLA--NLTRITQLGLNDQAWTNAPVNY----KANVSIPNTV 400
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 83/201 (41%), Gaps = 32/201 (15%)
Query: 274 LPIHSHKSLRLLDVS--NNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFL 331
LP H +++ LL V N +P I P L++ ++S N L+ +F L
Sbjct: 108 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167
Query: 332 QILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFV 391
Q L LS+N LT H+ + + +F N + LS L + V
Sbjct: 168 QNLQLSSNRLT-----HVDLSLI-------------PSLFHANVSYNLLSTLAIPI--AV 207
Query: 392 EEIPQSLSKCLSLEG--------LHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIP 443
EE+ S + + G L L +NNL+ WL N GL + + N LE +
Sbjct: 208 EELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY 265
Query: 444 VAFCQLDSLQILGISDNNISG 464
F ++ L+ L IS+N +
Sbjct: 266 HPFVKMQRLERLYISNNRLVA 286
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 145/614 (23%), Positives = 240/614 (39%), Gaps = 93/614 (15%)
Query: 107 SMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTL 166
+P LK L+L + S++ D+ +L ELH+ +N ++ +L TL
Sbjct: 81 KLPMLKVLNLQH----NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 136
Query: 167 DVSSNQLTGSISSSPLILDAY------NNEINAEITESHSLTAPNFQLKSLSLSSGYEDG 220
D+S N L+ + + + L+ NN+I A +E + A N LK L LSS
Sbjct: 137 DLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA-NSSLKKLELSSNQIKE 195
Query: 221 VTFPKFLHHQNKLEDVDLSHIKMNGEFPNWL-LE-NNTKLESLSLVNDSLAGPFRLPIHS 278
+ P H +L + L+++++ L LE NT + +LSL N L+
Sbjct: 196 FS-PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 254
Query: 279 HK--SLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALD------------------ 318
K +L +LD+S NN + + LP L F + N +
Sbjct: 255 LKWTNLTMLDLSYNNL-NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 313
Query: 319 -----------GSIPS----SFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSN 363
S+P SF + L+ L++ +N + G I ++ G +NL+ L LSN
Sbjct: 314 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSN 372
Query: 364 NNLEGHMFSKNFNLTKLSWLLLEDN--HFVEEIPQSLSKCLS--------LEGLHLNNNN 413
+ F+ LT +++ L + H + +SK S LE L L N
Sbjct: 373 S------FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 426
Query: 414 LSGKI--PQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQIL---GISDNNISGSLPS 468
+ ++ +W G L + I + N +F + SLQ L ++ N+ S
Sbjct: 427 IGQELTGQEWRG-LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP 485
Query: 469 Y----------LSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVXXXXXXXXXXXXX 518
+ LS N + D ++GL +L L L HNNL
Sbjct: 486 FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL 545
Query: 519 SDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQI-GNLTRIQTLNLSHN 577
S + L FD + + L L IDL N L +P + N +++LNL N
Sbjct: 546 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL-NTLPASVFNNQVSLKSLNLQKN 604
Query: 578 NLTGTILSTF-TNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTT 636
+T F R++ LD+ N + C+ ++ F N IPE+++
Sbjct: 605 LITSVEKKVFGPAFRNLTELDMRFNPFD--CTCE-----SIAWFVNWINETHTNIPELSS 657
Query: 637 QFATFNESNYKGNP 650
+ +Y G P
Sbjct: 658 HYLCNTPPHYHGFP 671
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 567 TRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNN 626
T I LNL+HN L + FT + SLD+ N ++ P +L L V ++ +N
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 627 LSGKIPEMTTQFAT 640
LS ++ + T F T
Sbjct: 95 LS-QLSDKTFAFCT 107
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 145/614 (23%), Positives = 240/614 (39%), Gaps = 93/614 (15%)
Query: 107 SMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTL 166
+P LK L+L + S++ D+ +L ELH+ +N ++ +L TL
Sbjct: 71 KLPMLKVLNLQH----NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 126
Query: 167 DVSSNQLTGSISSSPLILDAY------NNEINAEITESHSLTAPNFQLKSLSLSSGYEDG 220
D+S N L+ + + + L+ NN+I A +E + A N LK L LSS
Sbjct: 127 DLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA-NSSLKKLELSSNQIKE 185
Query: 221 VTFPKFLHHQNKLEDVDLSHIKMNGEFPNWL-LE-NNTKLESLSLVNDSLAGPFRLPIHS 278
+ P H +L + L+++++ L LE NT + +LSL N L+
Sbjct: 186 FS-PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244
Query: 279 HK--SLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALD------------------ 318
K +L +LD+S NN + + LP L F + N +
Sbjct: 245 LKWTNLTMLDLSYNNL-NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303
Query: 319 -----------GSIPS----SFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSN 363
S+P SF + L+ L++ +N + G I ++ G +NL+ L LSN
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSN 362
Query: 364 NNLEGHMFSKNFNLTKLSWLLLEDN--HFVEEIPQSLSKCLS--------LEGLHLNNNN 413
+ F+ LT +++ L + H + +SK S LE L L N
Sbjct: 363 S------FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416
Query: 414 LSGKI--PQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQIL---GISDNNISGSLPS 468
+ ++ +W G L + I + N +F + SLQ L ++ N+ S
Sbjct: 417 IGQELTGQEWRG-LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP 475
Query: 469 Y----------LSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVXXXXXXXXXXXXX 518
+ LS N + D ++GL +L L L HNNL
Sbjct: 476 FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL 535
Query: 519 SDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQI-GNLTRIQTLNLSHN 577
S + L FD + + L L IDL N L +P + N +++LNL N
Sbjct: 536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL-NTLPASVFNNQVSLKSLNLQKN 594
Query: 578 NLTGTILSTF-TNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTT 636
+T F R++ LD+ N + C+ ++ F N IPE+++
Sbjct: 595 LITSVEKKVFGPAFRNLTELDMRFNPFD--CTCE-----SIAWFVNWINETHTNIPELSS 647
Query: 637 QFATFNESNYKGNP 650
+ +Y G P
Sbjct: 648 HYLCNTPPHYHGFP 661
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 567 TRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNN 626
T I LNL+HN L + FT + SLD+ N ++ P +L L V ++ +N
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 627 LSGKIPEMTTQFAT 640
LS ++ + T F T
Sbjct: 85 LS-QLSDKTFAFCT 97
>pdb|3O3M|A Chain A, (R)-2-Hydroxyisocaproyl-Coa Dehydratase
pdb|3O3M|C Chain C, (R)-2-Hydroxyisocaproyl-Coa Dehydratase
pdb|3O3N|A Chain A, (R)-2-Hydroxyisocaproyl-Coa Dehydratase In Complex With
Its Substrate (R)-2-Hydroxyisocaproyl-Coa
pdb|3O3N|C Chain C, (R)-2-Hydroxyisocaproyl-Coa Dehydratase In Complex With
Its Substrate (R)-2-Hydroxyisocaproyl-Coa
pdb|3O3O|A Chain A, (R)-2-Hydroxyisocaproyl-Coa Dehydratase In Complex With
(R)-2- Hydroxyisocaproate
Length = 408
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 11/125 (8%)
Query: 206 FQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVN 265
+++K+L+ G +P Q ++ D+D + + F N L+ TK SLV
Sbjct: 273 YKMKTLAKFGVNMTGSVYPHAWALQYEVNDLDGMAVAYSTMFNNVNLDRMTKYRVDSLVE 332
Query: 266 DSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSF 325
G F H ++S +L+ + Q R E G LP + F+ D + P +F
Sbjct: 333 GKCDGAF---YHMNRSCKLMSLIQYEMQRRAAEETG--LP-YAGFD-----GDQADPRAF 381
Query: 326 GNMNF 330
N F
Sbjct: 382 TNAQF 386
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 19/128 (14%)
Query: 56 FPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACI------ALNA--SFLQIIGAS 107
PSL +L + D ++ V +Q F + L L + I A N S ++
Sbjct: 82 LPSLNTLELFDNRLT-TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGE 140
Query: 108 MPFLKYLSLSYFTFGTNSSRILDQGLC---------PLVHLQELHMANNDLRGSLPWCLA 158
+ L+Y+S + F G + R L+ G+C LV L+EL ++ N L P
Sbjct: 141 LKRLEYISEAAFE-GLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQ 199
Query: 159 NMTSLRTL 166
+TSLR L
Sbjct: 200 GLTSLRKL 207
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 80/199 (40%), Gaps = 22/199 (11%)
Query: 403 SLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNI 462
SL L L +N L+ Q L+ L+ + + N +E AF ++ SL+ L + +
Sbjct: 84 SLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGE--- 140
Query: 463 SGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVXXXXXXXXXXXXXSDNK 522
RL +GL+ L +L L NL+ ++P S N+
Sbjct: 141 ---------LKRLEYISEAAFEGLVNLRYLNLGMCNLK-DIP-NLTALVRLEELELSGNR 189
Query: 523 LHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGT 582
L + P F L R L L+ + + D +L ++ LNLSHNNL
Sbjct: 190 LDLIRPGSFQ--GLTSLRKLWLMHAQVATIERNAFD------DLKSLEELNLSHNNLMSL 241
Query: 583 ILSTFTNLRHIESLDLYHN 601
FT L +E + L HN
Sbjct: 242 PHDLFTPLHRLERVHLNHN 260
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 77/188 (40%), Gaps = 30/188 (15%)
Query: 281 SLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPS-SFGNMNFLQILDLSNN 339
SL L++ +N +P + + L L + N ++ SIPS +F + L+ LDL
Sbjct: 84 SLNTLELFDNRLTT-VPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGEL 141
Query: 340 HLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLS 399
I E G VNL L L NL ++IP +L+
Sbjct: 142 KRLEYISEAAFEGLVNLRYLNLGMCNL-------------------------KDIP-NLT 175
Query: 400 KCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISD 459
+ LE L L+ N L P LT L+ + + + AF L SL+ L +S
Sbjct: 176 ALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSH 235
Query: 460 NNISGSLP 467
NN+ SLP
Sbjct: 236 NNLM-SLP 242
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 541 VLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYH 600
L L ++LS N+L P LT ++ L L H + + F +L+ +E L+L H
Sbjct: 176 ALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSH 235
Query: 601 NKL 603
N L
Sbjct: 236 NNL 238
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 33/115 (28%)
Query: 320 SIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSN---NNLEGHMFSKNFN 376
SIPS G ++ LDLS N +T I C NL++L+L + N +EG F ++
Sbjct: 45 SIPS--GLTAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAF---YS 98
Query: 377 LTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYI 431
L SLE L L++N+LS W G L+ L+Y+
Sbjct: 99 LG------------------------SLEHLDLSDNHLSSLSSSWFGPLSSLKYL 129
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 19/128 (14%)
Query: 56 FPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACI------ALNA--SFLQIIGAS 107
PSL +L + D ++ V +Q F + L L + I A N S ++
Sbjct: 82 LPSLNTLELFDNRLT-TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGE 140
Query: 108 MPFLKYLSLSYFTFGTNSSRILDQGLC---------PLVHLQELHMANNDLRGSLPWCLA 158
+ L+Y+S + F G + R L+ G+C LV L+EL ++ N L P
Sbjct: 141 LKRLEYISEAAFE-GLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQ 199
Query: 159 NMTSLRTL 166
+TSLR L
Sbjct: 200 GLTSLRKL 207
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 80/199 (40%), Gaps = 22/199 (11%)
Query: 403 SLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNI 462
SL L L +N L+ Q L+ L+ + + N +E AF ++ SL+ L + +
Sbjct: 84 SLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGE--- 140
Query: 463 SGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVXXXXXXXXXXXXXSDNK 522
RL +GL+ L +L L NL+ ++P S N+
Sbjct: 141 ---------LKRLEYISEAAFEGLVNLRYLNLGMCNLK-DIP-NLTALVRLEELELSGNR 189
Query: 523 LHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGT 582
L + P F L R L L+ + + D +L ++ LNLSHNNL
Sbjct: 190 LDLIRPGSFQ--GLTSLRKLWLMHAQVATIERNAFD------DLKSLEELNLSHNNLMSL 241
Query: 583 ILSTFTNLRHIESLDLYHN 601
FT L +E + L HN
Sbjct: 242 PHDLFTPLHRLERVHLNHN 260
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 77/188 (40%), Gaps = 30/188 (15%)
Query: 281 SLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPS-SFGNMNFLQILDLSNN 339
SL L++ +N +P + + L L + N ++ SIPS +F + L+ LDL
Sbjct: 84 SLNTLELFDNRLTT-VPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGEL 141
Query: 340 HLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLS 399
I E G VNL L L NL ++IP +L+
Sbjct: 142 KRLEYISEAAFEGLVNLRYLNLGMCNL-------------------------KDIP-NLT 175
Query: 400 KCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISD 459
+ LE L L+ N L P LT L+ + + + AF L SL+ L +S
Sbjct: 176 ALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSH 235
Query: 460 NNISGSLP 467
NN+ SLP
Sbjct: 236 NNLM-SLP 242
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 541 VLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYH 600
L L ++LS N+L P LT ++ L L H + + F +L+ +E L+L H
Sbjct: 176 ALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSH 235
Query: 601 NKL 603
N L
Sbjct: 236 NNL 238
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 33/115 (28%)
Query: 320 SIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSN---NNLEGHMFSKNFN 376
SIPS G ++ LDLS N +T I C NL++L+L + N +EG F ++
Sbjct: 19 SIPS--GLTAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAF---YS 72
Query: 377 LTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYI 431
L SLE L L++N+LS W G L+ L+Y+
Sbjct: 73 LG------------------------SLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 83/199 (41%), Gaps = 32/199 (16%)
Query: 274 LPIHSHKSLRLLDVS--NNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFL 331
LP H +++ LL V N +P I P L++ ++S N L+ +F L
Sbjct: 114 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 173
Query: 332 QILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFV 391
Q L LS+N LT H+ + + +F N + LS L + V
Sbjct: 174 QNLQLSSNRLT-----HVDLSLI-------------PSLFHANVSYNLLSTLAIPI--AV 213
Query: 392 EEIPQSLSKCLSLEG--------LHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIP 443
EE+ S + + G L L +NNL+ WL N GL + + N LE +
Sbjct: 214 EELDASHNSINVVRGPVNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMY 271
Query: 444 VAFCQLDSLQILGISDNNI 462
F ++ L+ L IS+N +
Sbjct: 272 HPFVKMQRLERLYISNNRL 290
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 64/148 (43%), Gaps = 19/148 (12%)
Query: 355 NLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSL-SKCLSLEGLHLNNNN 413
N+ L L N L H S LT L++L+L N + +P + K +L+ L L N
Sbjct: 64 NVRYLALGGNKL--HDISALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQ 120
Query: 414 LSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYN 473
L LT L Y+ + N L+ F +L +L L LSYN
Sbjct: 121 LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD-------------LSYN 167
Query: 474 RLNGSIPDRI-DGLLRLSHLILAHNNLE 500
+L S+P+ + D L +L L L N L+
Sbjct: 168 QLQ-SLPEGVFDKLTQLKDLRLYQNQLK 194
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 11/155 (7%)
Query: 323 SSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEG---HMFSKNFNLTK 379
S+ + L L L+ N L +P + NL+ LVL N L+ +F K LT
Sbjct: 79 SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDK---LTN 134
Query: 380 LSWLLLEDNHFVEEIPQSL-SKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHL 438
L++L L N + +P+ + K +L L L+ N L LT L+ + + +N L
Sbjct: 135 LTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
Query: 439 EGPIPVAFCQLDSLQILGISDNNISGSLPS--YLS 471
+ F +L SLQ + + DN + P YLS
Sbjct: 194 KSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLS 228
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 72/188 (38%), Gaps = 47/188 (25%)
Query: 422 LGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPD 481
L LT L Y+I+ N L+ F +L +L+ L + +N + S+PD
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ--------------SLPD 126
Query: 482 RI-DGLLRLSHLILAHNNLEGEVPVXXXXXXXXXXXXXSDNKLHGLIPPCFDNTALHERR 540
+ D L L++L LAH N+L L FD
Sbjct: 127 GVFDKLTNLTYLNLAH------------------------NQLQSLPKGVFDK------- 155
Query: 541 VLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYH 600
L+ L+ +DLS N+L LT+++ L L N L F L ++ + L+
Sbjct: 156 -LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 214
Query: 601 NKLNGKIP 608
N + P
Sbjct: 215 NPWDCTCP 222
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 79/188 (42%), Gaps = 19/188 (10%)
Query: 5 SSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSM 64
+L L + +N +T++ + L+ +E T S I F +K LS
Sbjct: 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE-----NGAFQGMKKLSY 175
Query: 65 ID-CKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGT 123
I N QG P + +LD N ++ AS+ L L+ +F
Sbjct: 176 IRIADTNITTIPQGLPPSLTELHLDGN--------KITKVDAASLKGLNNLAKLGLSF-- 225
Query: 124 NSSRILDQG-LCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPL 182
NS +D G L HL+ELH+ NN L +P LA+ ++ + + +N ++ +I S+
Sbjct: 226 NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDF 283
Query: 183 ILDAYNNE 190
YN +
Sbjct: 284 CPPGYNTK 291
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 542 LSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHN 601
L ++ DL K+ D+PP L+L +N +T F NL+++ +L L +N
Sbjct: 33 LRVVQCSDLGLEKVPKDLPPDTA------LLDLQNNKITEIKDGDFKNLKNLHTLILINN 86
Query: 602 KLNGKIP---CQLVELNALVVFSVAYNNLSGKIPE 633
K++ P LV+L L + L K+P+
Sbjct: 87 KISKISPGAFAPLVKLERLYLSKNQLKELPEKMPK 121
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 79/188 (42%), Gaps = 19/188 (10%)
Query: 5 SSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSM 64
+L L + +N +T++ + L+ +E T S I F +K LS
Sbjct: 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE-----NGAFQGMKKLSY 175
Query: 65 ID-CKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGT 123
I N QG P + +LD N ++ AS+ L L+ +F
Sbjct: 176 IRIADTNITTIPQGLPPSLTELHLDGN--------KITKVDAASLKGLNNLAKLGLSF-- 225
Query: 124 NSSRILDQG-LCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPL 182
NS +D G L HL+ELH+ NN L +P LA+ ++ + + +N ++ +I S+
Sbjct: 226 NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDF 283
Query: 183 ILDAYNNE 190
YN +
Sbjct: 284 CPPGYNTK 291
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 542 LSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHN 601
L ++ DL K+ D+PP L+L +N +T F NL+++ +L L +N
Sbjct: 33 LRVVQCSDLGLEKVPKDLPPDTA------LLDLQNNKITEIKDGDFKNLKNLHTLILINN 86
Query: 602 KLNGKIP---CQLVELNALVVFSVAYNNLSGKIPE 633
K++ P LV+L L + L K+P+
Sbjct: 87 KISKISPGAFAPLVKLERLYLSKNQLKELPEKMPK 121
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 563 IGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPC 609
I +L++++ L +SHN + +S F + +E LDL HNKL KI C
Sbjct: 41 ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL-VKISC 86
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 81/206 (39%), Gaps = 51/206 (24%)
Query: 407 LHLN--NNNLSGKIPQWLGNLTGLQYIIIPENHLE--GPIPVAFCQLDSLQILGISDNNI 462
LHL+ NN L+ + + G+LT L+ +I+ N L+ I Q+ SLQ L IS N++
Sbjct: 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386
Query: 463 SGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVXXXXXXXXXXXXXSDNK 522
S Y+ G LL L+ ++ N L +
Sbjct: 387 S--------YDEKKGDC-SWTKSLLSLN---MSSNILT--------------------DT 414
Query: 523 LHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGT 582
+ +PP + +DL NK I IP Q+ L +Q LN++ N L
Sbjct: 415 IFRCLPP--------------RIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQLKSV 459
Query: 583 ILSTFTNLRHIESLDLYHNKLNGKIP 608
F L ++ + L+ N + P
Sbjct: 460 PDGIFDRLTSLQKIWLHTNPWDCSCP 485
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 59/143 (41%), Gaps = 36/143 (25%)
Query: 320 SIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTK 379
SIPS G ++ LDLSNN +T I CVNL+ LVL++N +
Sbjct: 19 SIPS--GLTEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGI------------- 62
Query: 380 LSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLE 439
+ +EE S S SLE L L+ N LS W L+ L ++ N L
Sbjct: 63 ---------NTIEE--DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL----NLLG 107
Query: 440 GPIPV-----AFCQLDSLQILGI 457
P F L LQIL +
Sbjct: 108 NPYKTLGETSLFSHLTKLQILRV 130
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 59/143 (41%), Gaps = 36/143 (25%)
Query: 320 SIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTK 379
SIPS G ++ LDLSNN +T I CVNL+ LVL++N +
Sbjct: 45 SIPS--GLTEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGI------------- 88
Query: 380 LSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLE 439
+ +EE S S SLE L L+ N LS W L+ L ++ N L
Sbjct: 89 ---------NTIEE--DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL----NLLG 133
Query: 440 GPIPV-----AFCQLDSLQILGI 457
P F L LQIL +
Sbjct: 134 NPYKTLGETSLFSHLTKLQILRV 156
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 65/144 (45%), Gaps = 11/144 (7%)
Query: 334 LDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEG---HMFSKNFNLTKLSWLLLEDNHF 390
LDL N L +P + +L L L N L+ +F+K LT L++L L N
Sbjct: 33 LDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNK---LTSLTYLNLSTNQ- 87
Query: 391 VEEIPQSL-SKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQL 449
++ +P + K L+ L LN N L LT L+ + + +N L+ F +L
Sbjct: 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 147
Query: 450 DSLQILGISDNNISGSLPS--YLS 471
SLQ + + DN + P YLS
Sbjct: 148 TSLQYIWLHDNPWDCTCPGIRYLS 171
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 11/135 (8%)
Query: 520 DNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQI-GNLTRIQTLNLSHNN 578
DN++ L P FD+ L L + L N+L G +P + +LT++ L+L N
Sbjct: 49 DNQITKLEPGVFDS--------LINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQ 99
Query: 579 LTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQF 638
LT + F L H++ L + NKL ++P + L L ++ N L +
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL 158
Query: 639 ATFNESNYKGNPFLC 653
++ + GNP+ C
Sbjct: 159 SSLTHAYLFGNPWDC 173
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 569 IQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLS 628
++ L+L+H +LT +L L + LDL HN+L +P L L L V + N L
Sbjct: 443 VRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE 499
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 569 IQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLS 628
++ L+L+H +LT +L L + LDL HN+L +P L L L V + N L
Sbjct: 443 VRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE 499
>pdb|3BCY|A Chain A, Crystal Structure Of Yer067w
Length = 155
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 33/69 (47%)
Query: 217 YEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPI 276
+ED F F+ ++ + +D D H K+N P L E++ E +S +S + F +
Sbjct: 19 FEDLQGFETFIANETEDDDFDHLHCKLNYYPPFVLHESHEDPEKISDAANSHSKKFVRHL 78
Query: 277 HSHKSLRLL 285
H H LL
Sbjct: 79 HQHIEKHLL 87
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 93/354 (26%), Positives = 154/354 (43%), Gaps = 44/354 (12%)
Query: 136 LVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEI 195
L L ++ M NN + P LAN+T+L L + +NQ+T +D N N
Sbjct: 84 LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD--------IDPLKNLTNLNR 133
Query: 196 TESHSLTAPNFQLKSLSLSS----GYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWL 251
E S T + S L+S + + VT K L + LE +D+S K++ +
Sbjct: 134 LELSSNTISDISALS-GLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDIS---V 189
Query: 252 LENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDI--LPSLSS 309
L T LESL N+ ++ L I ++ L L ++ N + +IG + L +L+
Sbjct: 190 LAKLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQLK-----DIGTLASLTNLTD 242
Query: 310 FNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGH 369
+++ N + P + L L L N ++ P NLE L+ N LE
Sbjct: 243 LDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLE---LNENQLED- 296
Query: 370 MFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQ 429
S NL L++L L N+ + P +S L+ L +NN +S L NLT +
Sbjct: 297 -ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV--SSLANLTNIN 351
Query: 430 YIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRI 483
++ N + P+A L + LG++D + + +Y + N SIP+ +
Sbjct: 352 WLSAGHNQISDLTPLA--NLTRITQLGLNDQAWTNAPVNY----KANVSIPNTV 399
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 563 IGNLTRIQTLNLSHNNLTGTILST-FTNLRHIESLDLYHNKLNG 605
IG+L ++ LN++HN + L F+NL ++E LDL NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 563 IGNLTRIQTLNLSHNNLTGTILST-FTNLRHIESLDLYHNKLNG 605
IG+L ++ LN++HN + L F+NL ++E LDL NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 563 IGNLTRIQTLNLSHNNLTGTILST-FTNLRHIESLDLYHNKLN 604
IG+L ++ LN++HN + L F+NL ++E LDL NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 563 IGNLTRIQTLNLSHNNLTGTILST-FTNLRHIESLDLYHNKLN 604
IG+L ++ LN++HN + L F+NL ++E LDL NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 563 IGNLTRIQTLNLSHNNLTGTILST-FTNLRHIESLDLYHNKLN 604
IG+L ++ LN++HN + L F+NL ++E LDL NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 51/136 (37%), Gaps = 10/136 (7%)
Query: 470 LSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVXXXXXXXXXXXXXSDNKLHGLIPP 529
L YN+L D L L L LA+N L N+L L
Sbjct: 66 LDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSG 125
Query: 530 CFDN-TALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFT 588
FD T L E R L+ N+L LT +QTL+LS N L F
Sbjct: 126 VFDRLTKLKELR---------LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176
Query: 589 NLRHIESLDLYHNKLN 604
L ++++ L+ N+ +
Sbjct: 177 RLGKLQTITLFGNQFD 192
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 51/136 (37%), Gaps = 10/136 (7%)
Query: 470 LSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVXXXXXXXXXXXXXSDNKLHGLIPP 529
L YN+L D L L L LA+N L N+L L
Sbjct: 66 LDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSG 125
Query: 530 CFDN-TALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFT 588
FD T L E R L+ N+L LT +QTL+LS N L F
Sbjct: 126 VFDRLTKLKELR---------LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176
Query: 589 NLRHIESLDLYHNKLN 604
L ++++ L+ N+ +
Sbjct: 177 RLGKLQTITLFGNQFD 192
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 94/354 (26%), Positives = 153/354 (43%), Gaps = 44/354 (12%)
Query: 136 LVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEI 195
L L ++ M NN + P LAN+T+L L + +NQ+T +D N N
Sbjct: 88 LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD--------IDPLKNLTNLNR 137
Query: 196 TESHSLTAPNFQ----LKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWL 251
E S T + L SL S + + VT K L + LE +D+S K++ +
Sbjct: 138 LELSSNTISDISALSGLTSLQQLS-FGNQVTDLKPLANLTTLERLDISSNKVSDIS---V 193
Query: 252 LENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDI--LPSLSS 309
L T LESL N+ ++ L I ++ L L ++ N + +IG + L +L+
Sbjct: 194 LAKLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQLK-----DIGTLASLTNLTD 246
Query: 310 FNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGH 369
+++ N + P + L L L N ++ P NLE L+ N LE
Sbjct: 247 LDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLE---LNENQLED- 300
Query: 370 MFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQ 429
S NL L++L L N+ + P +S L+ L NN +S L NLT +
Sbjct: 301 -ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTNIN 355
Query: 430 YIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRI 483
++ N + P+A L + LG++D + + +Y + N SIP+ +
Sbjct: 356 WLSAGHNQISDLTPLA--NLTRITQLGLNDQAWTNAPVNY----KANVSIPNTV 403
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 126/305 (41%), Gaps = 54/305 (17%)
Query: 306 SLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNN 365
S+ S N+ + S+F +Q LDL+ HL G +P + G +L+ LVL+ N+
Sbjct: 254 SVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIE-GMNSLKKLVLNANS 311
Query: 366 LEGHMFSKNFNLTKLSWLLLEDNHFVEEI-PQSLSKCLSLEGLHLNNNNLSGK--IPQWL 422
+ + L L ++ N ++ + L K +L+ L L+++++ L
Sbjct: 312 FDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQL 371
Query: 423 GNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSY------------L 470
NL LQY+ + N G AF + L++L ++ ++ P L
Sbjct: 372 KNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNL 431
Query: 471 SYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVXXXXXXXXXXXXXSDNKLHGLIPPC 530
S+ L+ S + GL L HL NL+G
Sbjct: 432 SHCLLDTSNQHLLAGLQDLRHL-----NLQGN---------------------------S 459
Query: 531 FDNTALHERRVLSLLSGIDL----SCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILST 586
F + ++ + +L ++ +++ SCN L D G L + L+LSHN+LTG +
Sbjct: 460 FQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHG-LRNVNHLDLSHNSLTGDSMDA 518
Query: 587 FTNLR 591
++L+
Sbjct: 519 LSHLK 523
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 13/77 (16%)
Query: 347 EHLAIGCVN-------LEILVLSNNNLEG-HMFSKNFNLTKLSWLLLEDNHFVEEIPQSL 398
EH I +N LE L L NN + + S+ LTKL L LEDN +P L
Sbjct: 118 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSR---LTKLDTLSLEDNQIRRIVP--L 172
Query: 399 SKCLSLEGLHLNNNNLS 415
++ L+ L+L+ N++S
Sbjct: 173 ARLTKLQNLYLSKNHIS 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,612,909
Number of Sequences: 62578
Number of extensions: 897728
Number of successful extensions: 2743
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 1838
Number of HSP's gapped (non-prelim): 520
length of query: 740
length of database: 14,973,337
effective HSP length: 106
effective length of query: 634
effective length of database: 8,340,069
effective search space: 5287603746
effective search space used: 5287603746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)