Query 038858
Match_columns 740
No_of_seqs 562 out of 5099
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 04:00:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038858.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038858hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.8E-60 8.2E-65 563.1 42.7 542 58-656 70-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.8E-57 6.2E-62 538.5 41.1 522 81-657 68-589 (968)
3 KOG4194 Membrane glycoprotein 100.0 5.9E-44 1.3E-48 357.1 4.2 400 256-680 78-497 (873)
4 KOG4194 Membrane glycoprotein 100.0 4.6E-39 1E-43 322.1 6.0 373 207-603 79-451 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 1.6E-39 3.5E-44 311.6 -14.8 368 224-628 153-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 3.3E-39 7.1E-44 309.5 -13.6 389 226-652 132-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 4E-35 8.7E-40 309.8 -4.6 484 37-627 3-488 (1081)
8 KOG0618 Serine/threonine phosp 100.0 1.5E-34 3.3E-39 305.5 -2.9 508 9-625 2-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 5.6E-33 1.2E-37 280.4 -4.6 365 231-628 7-375 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 2.6E-32 5.7E-37 275.6 -1.5 385 207-624 8-395 (1255)
11 KOG4237 Extracellular matrix p 99.9 1.5E-26 3.3E-31 222.5 -2.5 100 558-657 264-364 (498)
12 PLN03210 Resistant to P. syrin 99.9 1.4E-22 3.1E-27 241.1 26.2 344 252-626 554-904 (1153)
13 PLN03210 Resistant to P. syrin 99.9 8.5E-22 1.8E-26 234.5 26.9 339 225-602 552-904 (1153)
14 KOG4237 Extracellular matrix p 99.9 1.4E-25 3E-30 216.0 -4.5 252 280-554 67-357 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 2.2E-20 4.7E-25 205.8 16.7 154 281-463 202-355 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 5.8E-20 1.3E-24 202.4 18.4 261 307-633 203-463 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 3.2E-18 7E-23 190.2 13.3 247 305-604 178-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 2.1E-18 4.6E-23 191.6 11.7 204 330-580 221-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 6E-20 1.3E-24 190.6 -0.8 90 562-651 216-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 7.5E-19 1.6E-23 182.4 -2.2 62 566-627 249-319 (319)
21 KOG0617 Ras suppressor protein 99.6 6E-18 1.3E-22 144.6 -3.5 161 424-611 31-192 (264)
22 KOG0617 Ras suppressor protein 99.5 1.2E-16 2.7E-21 136.7 -4.3 164 376-589 31-194 (264)
23 PLN03150 hypothetical protein; 99.5 3.9E-14 8.4E-19 157.5 10.6 118 544-661 419-538 (623)
24 KOG0532 Leucine-rich repeat (L 99.2 2.1E-12 4.5E-17 131.5 -2.1 195 401-626 74-271 (722)
25 KOG3207 Beta-tubulin folding c 99.2 1.6E-11 3.4E-16 121.5 3.5 164 3-174 119-284 (505)
26 KOG1259 Nischarin, modulator o 99.1 1.1E-11 2.4E-16 116.3 0.5 131 487-631 284-415 (490)
27 KOG0532 Leucine-rich repeat (L 99.1 5.2E-12 1.1E-16 128.7 -2.2 213 359-602 55-271 (722)
28 COG4886 Leucine-rich repeat (L 99.1 9.9E-11 2.1E-15 125.0 6.7 195 382-606 97-292 (394)
29 KOG1909 Ran GTPase-activating 99.1 1.7E-11 3.6E-16 118.0 0.4 192 108-341 91-310 (382)
30 KOG1909 Ran GTPase-activating 99.1 5.7E-12 1.2E-16 121.2 -2.8 93 80-174 90-198 (382)
31 KOG1259 Nischarin, modulator o 99.1 3E-11 6.6E-16 113.4 2.1 201 376-606 212-414 (490)
32 PF14580 LRR_9: Leucine-rich r 99.1 1.1E-10 2.4E-15 105.8 5.5 142 12-169 4-148 (175)
33 KOG3207 Beta-tubulin folding c 99.1 2.2E-11 4.7E-16 120.5 0.8 186 108-342 120-314 (505)
34 COG4886 Leucine-rich repeat (L 99.0 2.6E-10 5.7E-15 121.7 7.3 135 482-630 158-292 (394)
35 PLN03150 hypothetical protein; 99.0 1.4E-09 3.1E-14 121.3 9.0 113 512-632 419-532 (623)
36 PF14580 LRR_9: Leucine-rich r 98.9 2.1E-09 4.5E-14 97.6 7.1 130 3-145 17-148 (175)
37 KOG0531 Protein phosphatase 1, 98.9 1E-10 2.2E-15 124.8 -1.8 267 329-632 49-322 (414)
38 KOG0531 Protein phosphatase 1, 98.9 3.6E-10 7.9E-15 120.6 0.3 267 305-608 49-322 (414)
39 PF13855 LRR_8: Leucine rich r 98.9 1.7E-09 3.7E-14 80.4 3.5 59 544-602 2-60 (61)
40 PF13855 LRR_8: Leucine rich r 98.9 1.4E-09 3.1E-14 80.8 2.9 61 567-627 1-61 (61)
41 KOG4658 Apoptotic ATPase [Sign 98.7 1.3E-08 2.8E-13 116.1 6.2 39 566-604 769-807 (889)
42 KOG2120 SCF ubiquitin ligase, 98.7 7.5E-10 1.6E-14 104.2 -4.6 183 58-266 186-373 (419)
43 KOG4658 Apoptotic ATPase [Sign 98.7 3.3E-08 7.1E-13 112.8 7.3 202 254-463 521-730 (889)
44 KOG2120 SCF ubiquitin ligase, 98.6 2.7E-09 5.8E-14 100.5 -3.3 229 35-291 139-374 (419)
45 KOG1859 Leucine-rich repeat pr 98.6 1.9E-09 4E-14 113.3 -5.7 125 488-627 165-291 (1096)
46 KOG1859 Leucine-rich repeat pr 98.5 1.3E-09 2.9E-14 114.4 -7.5 179 395-604 102-292 (1096)
47 KOG4341 F-box protein containi 98.5 3E-09 6.5E-14 105.1 -4.7 307 32-361 138-459 (483)
48 KOG4341 F-box protein containi 98.5 4.4E-09 9.4E-14 103.9 -4.6 307 57-385 138-459 (483)
49 KOG2982 Uncharacterized conser 98.3 7E-08 1.5E-12 91.2 -0.7 111 59-174 47-159 (418)
50 KOG2982 Uncharacterized conser 98.3 2.1E-07 4.5E-12 88.1 2.1 85 31-119 70-156 (418)
51 COG5238 RNA1 Ran GTPase-activa 98.3 7.6E-08 1.7E-12 89.7 -1.8 64 304-367 213-285 (388)
52 COG5238 RNA1 Ran GTPase-activa 98.2 1.3E-07 2.9E-12 88.1 -1.7 88 4-92 29-130 (388)
53 KOG4579 Leucine-rich repeat (L 98.1 2.2E-07 4.7E-12 77.6 -2.7 58 568-627 78-135 (177)
54 KOG3665 ZYG-1-like serine/thre 98.0 3.2E-06 7E-11 94.2 3.2 138 32-177 122-266 (699)
55 KOG3665 ZYG-1-like serine/thre 97.9 1.7E-06 3.7E-11 96.3 -0.2 138 80-265 146-284 (699)
56 KOG4579 Leucine-rich repeat (L 97.9 4.7E-07 1E-11 75.6 -3.4 103 545-650 29-134 (177)
57 PRK15386 type III secretion pr 97.8 7.2E-05 1.6E-09 76.8 9.1 54 377-436 51-104 (426)
58 KOG1644 U2-associated snRNP A' 97.8 3.9E-05 8.5E-10 69.0 6.0 106 304-412 41-150 (233)
59 PF12799 LRR_4: Leucine Rich r 97.8 1.9E-05 4E-10 53.5 2.9 36 568-604 2-37 (44)
60 PF12799 LRR_4: Leucine Rich r 97.8 2.4E-05 5.3E-10 52.9 3.4 36 592-628 2-37 (44)
61 PF13306 LRR_5: Leucine rich r 97.7 0.00011 2.4E-09 64.4 6.9 55 304-361 11-65 (129)
62 PF13306 LRR_5: Leucine rich r 97.6 0.00013 2.7E-09 64.0 6.9 106 323-434 6-111 (129)
63 KOG1644 U2-associated snRNP A' 97.6 7.9E-05 1.7E-09 67.1 5.1 130 8-149 22-152 (233)
64 PRK15386 type III secretion pr 97.6 0.00015 3.3E-09 74.4 7.2 137 423-602 49-188 (426)
65 KOG2739 Leucine-rich acidic nu 97.5 6.5E-05 1.4E-09 70.8 3.2 110 29-145 40-151 (260)
66 KOG2739 Leucine-rich acidic nu 97.2 0.00014 3.1E-09 68.6 1.1 109 55-170 41-152 (260)
67 KOG1947 Leucine rich repeat pr 97.1 0.00016 3.5E-09 79.7 0.7 121 49-173 180-307 (482)
68 KOG1947 Leucine rich repeat pr 97.0 0.00014 3.1E-09 80.2 -0.2 163 4-172 187-373 (482)
69 KOG2123 Uncharacterized conser 96.4 0.00011 2.5E-09 69.3 -5.3 103 30-143 17-123 (388)
70 KOG2123 Uncharacterized conser 96.4 0.0002 4.3E-09 67.7 -4.0 82 280-366 19-100 (388)
71 TIGR00864 PCC polycystin catio 95.5 0.0066 1.4E-07 75.5 2.2 58 621-678 1-77 (2740)
72 PF00560 LRR_1: Leucine Rich R 94.2 0.018 3.8E-07 32.2 0.6 12 593-604 2-13 (22)
73 KOG3864 Uncharacterized conser 94.2 0.011 2.5E-07 53.7 -0.4 86 32-120 101-187 (221)
74 PF00560 LRR_1: Leucine Rich R 93.9 0.024 5.1E-07 31.7 0.7 19 569-588 2-20 (22)
75 KOG4308 LRR-containing protein 93.3 0.00062 1.3E-08 72.9 -11.8 140 34-174 89-246 (478)
76 KOG4308 LRR-containing protein 92.8 0.0012 2.6E-08 70.8 -10.7 40 280-319 262-304 (478)
77 KOG3864 Uncharacterized conser 91.0 0.017 3.7E-07 52.6 -3.6 83 7-92 103-186 (221)
78 PF13504 LRR_7: Leucine rich r 90.6 0.14 3.1E-06 26.4 1.1 9 594-602 4-12 (17)
79 KOG0473 Leucine-rich repeat pr 89.5 0.014 3E-07 54.2 -5.6 83 543-628 42-124 (326)
80 smart00370 LRR Leucine-rich re 89.0 0.35 7.6E-06 28.2 2.0 14 591-604 2-15 (26)
81 smart00369 LRR_TYP Leucine-ric 89.0 0.35 7.6E-06 28.2 2.0 14 591-604 2-15 (26)
82 KOG0473 Leucine-rich repeat pr 89.0 0.015 3.2E-07 54.0 -5.8 87 507-604 38-124 (326)
83 smart00369 LRR_TYP Leucine-ric 88.3 0.43 9.4E-06 27.8 2.1 16 615-630 2-17 (26)
84 smart00370 LRR Leucine-rich re 88.3 0.43 9.4E-06 27.8 2.1 16 615-630 2-17 (26)
85 PF13516 LRR_6: Leucine Rich r 87.1 0.36 7.7E-06 27.5 1.2 21 32-52 2-22 (24)
86 PF13516 LRR_6: Leucine Rich r 85.9 0.24 5.2E-06 28.2 0.1 14 591-604 2-15 (24)
87 smart00365 LRR_SD22 Leucine-ri 79.2 1.9 4.1E-05 25.2 2.0 17 4-20 1-17 (26)
88 smart00368 LRR_RI Leucine rich 79.1 1.8 3.9E-05 25.8 2.0 23 32-54 2-24 (28)
89 KOG4242 Predicted myosin-I-bin 75.8 9.7 0.00021 40.0 7.3 67 279-348 164-233 (553)
90 KOG4242 Predicted myosin-I-bin 75.5 11 0.00024 39.6 7.6 37 257-293 414-453 (553)
91 smart00364 LRR_BAC Leucine-ric 65.3 4.5 9.6E-05 23.6 1.3 13 592-604 3-15 (26)
92 smart00367 LRR_CC Leucine-rich 60.1 7.8 0.00017 22.4 1.8 11 82-92 2-12 (26)
93 smart00082 LRRCT Leucine rich 55.6 5.7 0.00012 27.5 0.9 10 649-658 1-10 (51)
94 KOG3763 mRNA export factor TAP 51.8 8 0.00017 41.5 1.6 64 542-605 217-284 (585)
95 KOG3763 mRNA export factor TAP 44.3 12 0.00027 40.1 1.6 36 566-601 217-254 (585)
96 PF01102 Glycophorin_A: Glycop 42.0 20 0.00043 30.4 2.2 19 691-709 71-89 (122)
97 PF15050 SCIMP: SCIMP protein 34.0 43 0.00092 27.8 2.8 26 689-714 12-37 (133)
98 PF15102 TMEM154: TMEM154 prot 32.3 15 0.00033 31.9 0.0 16 697-712 72-87 (146)
99 TIGR00864 PCC polycystin catio 27.9 36 0.00079 44.4 2.2 32 549-580 1-32 (2740)
100 PF15176 LRR19-TM: Leucine-ric 27.6 77 0.0017 25.6 3.1 28 689-716 21-48 (102)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.8e-60 Score=563.15 Aligned_cols=542 Identities=31% Similarity=0.464 Sum_probs=420.8
Q ss_pred CCCEEEcCCCCCCCcCCCCCCCCCCCCCEEecCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCCCC
Q 038858 58 SLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLV 137 (740)
Q Consensus 58 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~ 137 (740)
+++.|+++++.+.+..+. .+..+++|++|+|++| .+.+.++..+...+++|++|++++|.+. +.+|. ..++
T Consensus 70 ~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L~Ls~n--~~~~~ip~~~~~~l~~L~~L~Ls~n~l~---~~~p~---~~l~ 140 (968)
T PLN00113 70 RVVSIDLSGKNISGKISS-AIFRLPYIQTINLSNN--QLSGPIPDDIFTTSSSLRYLNLSNNNFT---GSIPR---GSIP 140 (968)
T ss_pred cEEEEEecCCCccccCCh-HHhCCCCCCEEECCCC--ccCCcCChHHhccCCCCCEEECcCCccc---cccCc---cccC
Confidence 344444444444433322 2444444444444444 2233344433322444444444444443 22222 2234
Q ss_pred CCCEEEccCCccccccCccccCCCCCCEEEccCCcCccccCCCchhhcccccccchhcccccCCCCCCccccEEEccCCC
Q 038858 138 HLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGY 217 (740)
Q Consensus 138 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 217 (740)
+|++|++++|.+.+..|..++.+++|++|++++|.+.+.+|..+ ....+|+.|++ .++
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~---------------------~~l~~L~~L~L-~~n 198 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL---------------------TNLTSLEFLTL-ASN 198 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh---------------------hhCcCCCeeec-cCC
Confidence 44444444444444444444444444444444444443333221 22224444444 333
Q ss_pred CCCCCCchhhcCCCCCCEEEccCCCCcccCchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCC
Q 038858 218 EDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIP 297 (740)
Q Consensus 218 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 297 (740)
...+..|..+..+++|+.|++++|.+.+.+|..+ +.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.+|
T Consensus 199 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 277 (968)
T PLN00113 199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP 277 (968)
T ss_pred CCcCcCChHHcCcCCccEEECcCCccCCcCChhH-hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc
Confidence 3334455677778889999999998888888876 788999999999998888888888889999999999999888888
Q ss_pred hhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCC
Q 038858 298 AEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNL 377 (740)
Q Consensus 298 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 377 (740)
..+.. +++|++|++++|.+.+..|..+.++++|+.|++++|.+.+.+|..+. .+++|+.|++++|.+.+..+..+..+
T Consensus 278 ~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~~ 355 (968)
T PLN00113 278 PSIFS-LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT-SLPRLQVLQLWSNKFSGEIPKNLGKH 355 (968)
T ss_pred hhHhh-ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh-cCCCCCEEECcCCCCcCcCChHHhCC
Confidence 87776 78999999999999888888899999999999999999877776654 78999999999999988888888889
Q ss_pred CCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEec
Q 038858 378 TKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGI 457 (740)
Q Consensus 378 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 457 (740)
++|+.|++++|++.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+..++.|+.|++
T Consensus 356 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 435 (968)
T PLN00113 356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDI 435 (968)
T ss_pred CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEEC
Confidence 99999999999998888888888899999999999998888888999999999999999999888989999999999999
Q ss_pred cCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccc
Q 038858 458 SDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALH 537 (740)
Q Consensus 458 ~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 537 (740)
++|.+.+ ..|..+..+++|+.|++++|.+.+..|..+. .++|+.|++++|++.+..|..+..
T Consensus 436 s~N~l~~-------------~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~~~L~~L~ls~n~l~~~~~~~~~~---- 497 (968)
T PLN00113 436 SNNNLQG-------------RINSRKWDMPSLQMLSLARNKFFGGLPDSFG-SKRLENLDLSRNQFSGAVPRKLGS---- 497 (968)
T ss_pred cCCcccC-------------ccChhhccCCCCcEEECcCceeeeecCcccc-cccceEEECcCCccCCccChhhhh----
Confidence 9998874 4455567789999999999999888877654 589999999999999988887766
Q ss_pred hhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCC
Q 038858 538 ERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNAL 617 (740)
Q Consensus 538 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 617 (740)
+++|+.|++++|.+.+.+|..+..+++|++|+|++|.+++.+|..|..+++|+.|+|++|++++.+|..+..+++|
T Consensus 498 ----l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 573 (968)
T PLN00113 498 ----LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESL 573 (968)
T ss_pred ----hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCccc
Confidence 6799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEccCCcccccCCCCCccccCCCccccCCCCCCCCCC
Q 038858 618 VVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLP 656 (740)
Q Consensus 618 ~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~ 656 (740)
+++++++|++++.+|.. +++.++...++.|||..|+-+
T Consensus 574 ~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 574 VQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred CEEeccCCcceeeCCCc-chhcccChhhhcCCccccCCc
Confidence 99999999999999985 778888889999999999743
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.8e-57 Score=538.54 Aligned_cols=522 Identities=32% Similarity=0.483 Sum_probs=476.8
Q ss_pred CCCCCEEecCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCccccccCccccCC
Q 038858 81 FKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANM 160 (740)
Q Consensus 81 l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l 160 (740)
..+++.|++++| .+.+..+..+.. +++|++|++++|.+. +.+|...+..+++|++|++++|.+.+..|. +.+
T Consensus 68 ~~~v~~L~L~~~--~i~~~~~~~~~~-l~~L~~L~Ls~n~~~---~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l 139 (968)
T PLN00113 68 SSRVVSIDLSGK--NISGKISSAIFR-LPYIQTINLSNNQLS---GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSI 139 (968)
T ss_pred CCcEEEEEecCC--CccccCChHHhC-CCCCCEEECCCCccC---CcCChHHhccCCCCCEEECcCCccccccCc--ccc
Confidence 458999999999 556777777777 999999999999987 788885566999999999999999887774 568
Q ss_pred CCCCEEEccCCcCccccCCCchhhcccccccchhcccccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccC
Q 038858 161 TSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSH 240 (740)
Q Consensus 161 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 240 (740)
++|++|++++|.+.+.+|..+ ....+|+.|++ +++...+..|..+.++++|+.|++++
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~---------------------~~l~~L~~L~L-~~n~l~~~~p~~~~~l~~L~~L~L~~ 197 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDI---------------------GSFSSLKVLDL-GGNVLVGKIPNSLTNLTSLEFLTLAS 197 (968)
T ss_pred CCCCEEECcCCcccccCChHH---------------------hcCCCCCEEEC-ccCcccccCChhhhhCcCCCeeeccC
Confidence 999999999999987777543 44569999999 66677778888999999999999999
Q ss_pred CCCcccCchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCccc
Q 038858 241 IKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGS 320 (740)
Q Consensus 241 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 320 (740)
|.+.+..|..+ +.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+++.
T Consensus 198 n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~ 275 (968)
T PLN00113 198 NQLVGQIPREL-GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN-LKNLQYLFLYQNKLSGP 275 (968)
T ss_pred CCCcCcCChHH-cCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhC-CCCCCEEECcCCeeecc
Confidence 99998899886 88999999999999999888888999999999999999999888887776 89999999999999989
Q ss_pred CCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCcccccc
Q 038858 321 IPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSK 400 (740)
Q Consensus 321 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 400 (740)
.|..+.++++|++|++++|.+.+.+|..+. .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..
T Consensus 276 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 354 (968)
T PLN00113 276 IPPSIFSLQKLISLDLSDNSLSGEIPELVI-QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354 (968)
T ss_pred CchhHhhccCcCEEECcCCeeccCCChhHc-CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC
Confidence 999999999999999999999878776654 7999999999999999888888889999999999999999899999999
Q ss_pred CCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCc
Q 038858 401 CLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIP 480 (740)
Q Consensus 401 l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~ 480 (740)
+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++ ..|
T Consensus 355 ~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~-------------~~p 421 (968)
T PLN00113 355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG-------------ELP 421 (968)
T ss_pred CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee-------------ECC
Confidence 9999999999999998899999999999999999999999999999999999999999998874 566
Q ss_pred hhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCC
Q 038858 481 DRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIP 560 (740)
Q Consensus 481 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 560 (740)
..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..|..+.. ++|+.|++++|++.+..|
T Consensus 422 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~---------~~L~~L~ls~n~l~~~~~ 492 (968)
T PLN00113 422 SEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS---------KRLENLDLSRNQFSGAVP 492 (968)
T ss_pred hhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccccc---------ccceEEECcCCccCCccC
Confidence 77889999999999999999999988999999999999999999888876643 689999999999999999
Q ss_pred cCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccC
Q 038858 561 PQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFAT 640 (740)
Q Consensus 561 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 640 (740)
..+..+++|+.|+|++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+..
T Consensus 493 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 572 (968)
T PLN00113 493 RKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVES 572 (968)
T ss_pred hhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred CCccccCCCCCCCCCCC
Q 038858 641 FNESNYKGNPFLCGLPL 657 (740)
Q Consensus 641 l~~~~~~~Np~~C~~~~ 657 (740)
|+.+++++|++.+..|.
T Consensus 573 L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 573 LVQVNISHNHLHGSLPS 589 (968)
T ss_pred cCEEeccCCcceeeCCC
Confidence 99999999999987663
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=5.9e-44 Score=357.08 Aligned_cols=400 Identities=23% Similarity=0.266 Sum_probs=358.2
Q ss_pred CCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEE
Q 038858 256 TKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILD 335 (740)
Q Consensus 256 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 335 (740)
+.-+.|++++|++.......|.++++|+++++.+|.++ .+|..... ..+++.|+|.+|.|+.+..+.++.++.|+.||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~-sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE-SGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc-ccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 34567999999999888888899999999999999998 88875544 66799999999999988888999999999999
Q ss_pred eecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCc
Q 038858 336 LSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLS 415 (740)
Q Consensus 336 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~ 415 (740)
|+.|.|+ +++...|..-.++++|+|++|+|+......|.++.+|.+|.|+.|+++...+..|..+++|+.|++..|+|.
T Consensus 156 LSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 156 LSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred hhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence 9999998 888777756678999999999999999899999999999999999999988889999999999999999997
Q ss_pred ccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcc
Q 038858 416 GKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILA 495 (740)
Q Consensus 416 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~ 495 (740)
...-..|.++++|+.|.+..|.+......+|..+.++++|+++.|++.. .-..|+.++++|+.|+++
T Consensus 235 ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~-------------vn~g~lfgLt~L~~L~lS 301 (873)
T KOG4194|consen 235 IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA-------------VNEGWLFGLTSLEQLDLS 301 (873)
T ss_pred eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh-------------hhcccccccchhhhhccc
Confidence 4445688999999999999999998888899999999999999998872 334678889999999999
Q ss_pred cccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCc
Q 038858 496 HNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLS 575 (740)
Q Consensus 496 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 575 (740)
+|.|....++.++.+++|++|+|+.|+|+...++.|.. ++.|++|+|++|++..+...+|..+++|++|||+
T Consensus 302 ~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~--------L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr 373 (873)
T KOG4194|consen 302 YNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV--------LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLR 373 (873)
T ss_pred hhhhheeecchhhhcccceeEeccccccccCChhHHHH--------HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCc
Confidence 99999889999999999999999999999888888877 7899999999999998888899999999999999
Q ss_pred CCcCCCccc---hhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCC
Q 038858 576 HNNLTGTIL---STFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFL 652 (740)
Q Consensus 576 ~n~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~ 652 (740)
+|.++..+. ..|.++++|+.|++.+|++..+....|..++.|+.||+.+|.+...-|++|.++ .|+++-+.--.++
T Consensus 374 ~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssfl 452 (873)
T KOG4194|consen 374 SNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFL 452 (873)
T ss_pred CCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceE
Confidence 999987655 458899999999999999998888899999999999999999999999999999 8999999999999
Q ss_pred CCCCC-----------------CCCCCCCcccccCCCCCCCCccc
Q 038858 653 CGLPL-----------------PICRSPVTMLEASTSNEGDDNLI 680 (740)
Q Consensus 653 C~~~~-----------------~~c~~~~~~~~~~~~~~~~~~~~ 680 (740)
|+|++ ..|+.|+...++.+...+.....
T Consensus 453 CDCql~Wl~qWl~~~~lq~sv~a~CayPe~Lad~~i~svd~~~lv 497 (873)
T KOG4194|consen 453 CDCQLKWLAQWLYRRKLQSSVIAKCAYPEPLADQSIVSVDTANLV 497 (873)
T ss_pred EeccHHHHHHHHHhcccccceeeeccCCcccccceeEeechhhce
Confidence 99974 26999999888777666554443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-39 Score=322.11 Aligned_cols=373 Identities=23% Similarity=0.253 Sum_probs=325.9
Q ss_pred cccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEe
Q 038858 207 QLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLD 286 (740)
Q Consensus 207 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 286 (740)
.-+.|++ +++.+....+.++.++++|+.+++.+|.++ .+|... +...+++.|+|.+|.|+.+....+..++.|+.||
T Consensus 79 ~t~~Ldl-snNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 79 QTQTLDL-SNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred ceeeeec-cccccccCcHHHHhcCCcceeeeeccchhh-hccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 5667888 677777777889999999999999999998 777753 6667799999999999998888899999999999
Q ss_pred ccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccc
Q 038858 287 VSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNL 366 (740)
Q Consensus 287 l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 366 (740)
|+.|.++ .+|..-+..-.++++|+|++|.|+......|.++.+|..|.|++|+++ .+|...|+.+++|+.|+|..|+|
T Consensus 156 LSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 156 LSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred hhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccce
Confidence 9999998 787776665678999999999999988899999999999999999999 99999998899999999999999
Q ss_pred cccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccc
Q 038858 367 EGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAF 446 (740)
Q Consensus 367 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 446 (740)
.-...-.|.++++|+.|.+..|++.....++|..+.++++|+++.|++...-.+++.+++.|+.|++++|.|..+.++++
T Consensus 234 rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W 313 (873)
T KOG4194|consen 234 RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW 313 (873)
T ss_pred eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh
Confidence 87767789999999999999999998888999999999999999999998788899999999999999999998889999
Q ss_pred cCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCC
Q 038858 447 CQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGL 526 (740)
Q Consensus 447 ~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 526 (740)
..+++|++|+++.|+++ ...+..|..+..|++|+|+.|.+.......|..+.+|++|||+.|.++..
T Consensus 314 sftqkL~~LdLs~N~i~-------------~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~ 380 (873)
T KOG4194|consen 314 SFTQKLKELDLSSNRIT-------------RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWC 380 (873)
T ss_pred hhcccceeEeccccccc-------------cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEE
Confidence 99999999999999987 24456788899999999999999988888899999999999999998865
Q ss_pred CCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcC
Q 038858 527 IPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKL 603 (740)
Q Consensus 527 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 603 (740)
+...- ..+..+++|+.|++.+|++..+...+|.++++|+.|||.+|.|..+.+++|..+ .|++|.++.-.+
T Consensus 381 IEDaa-----~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 381 IEDAA-----VAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred Eecch-----hhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence 44321 122337788888888888886666788888888888888888888888888888 888887754433
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.6e-39 Score=311.62 Aligned_cols=368 Identities=26% Similarity=0.360 Sum_probs=171.5
Q ss_pred chhhcCCCCCCEEEccCCCCcccCchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhc
Q 038858 224 PKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDI 303 (740)
Q Consensus 224 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~ 303 (740)
|..+.++.++..+++.+|.+. ..|+... +++.|++|+.-.|.+.. .|..++.+.+|..|++..|++. .+| .+. .
T Consensus 153 p~~~~~~~~l~~l~~~~n~l~-~l~~~~i-~m~~L~~ld~~~N~L~t-lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~-g 226 (565)
T KOG0472|consen 153 PEDMVNLSKLSKLDLEGNKLK-ALPENHI-AMKRLKHLDCNSNLLET-LPPELGGLESLELLYLRRNKIR-FLP-EFP-G 226 (565)
T ss_pred chHHHHHHHHHHhhccccchh-hCCHHHH-HHHHHHhcccchhhhhc-CChhhcchhhhHHHHhhhcccc-cCC-CCC-c
Confidence 334444555666666666665 3333322 25556666555554442 3445555555555666666555 444 222 2
Q ss_pred CCCCcEEEccCCcCcccCCcc-ccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCe
Q 038858 304 LPSLSSFNISMNALDGSIPSS-FGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSW 382 (740)
Q Consensus 304 ~~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 382 (740)
|..|++|.++.|.|. .+|.+ ...++.+.+||+.+|+++ +.|..+. -+.+|++||+++|.+++. +..++++ .|+.
T Consensus 227 cs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~c-lLrsL~rLDlSNN~is~L-p~sLgnl-hL~~ 301 (565)
T KOG0472|consen 227 CSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEIC-LLRSLERLDLSNNDISSL-PYSLGNL-HLKF 301 (565)
T ss_pred cHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHH-HhhhhhhhcccCCccccC-Ccccccc-eeee
Confidence 455555555555555 23322 235555556666666655 5555554 355555666665555543 2334455 5555
Q ss_pred EEccCCcccccCccccccCC--CCCeEE-------ccCCcC---c-cc-CCC---CCCCccCcceeeccCCcccCCCCcc
Q 038858 383 LLLEDNHFVEEIPQSLSKCL--SLEGLH-------LNNNNL---S-GK-IPQ---WLGNLTGLQYIIIPENHLEGPIPVA 445 (740)
Q Consensus 383 L~l~~n~~~~~~~~~~~~l~--~L~~L~-------l~~n~i---~-~~-~~~---~l~~l~~L~~L~l~~n~~~~~~~~~ 445 (740)
|.+.+|++.++-.+-+.+-+ -|++|. ++...- + .. .+. ......+.+.|++++-+++.++.+.
T Consensus 302 L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEV 381 (565)
T KOG0472|consen 302 LALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEV 381 (565)
T ss_pred hhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHH
Confidence 55555554322111110000 011110 000000 0 00 000 1112334455555555555333333
Q ss_pred ccCC--CCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcE-EEcccccccccccccccCCCcccEEeCCCcc
Q 038858 446 FCQL--DSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSH-LILAHNNLEGEVPVQLCGLNQLQLLDLSDNK 522 (740)
Q Consensus 446 ~~~~--~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 522 (740)
|..- .-....++++|++. .+|..+..+..+.+ +.+++|.+. .+|..++.+++|..|++++|.
T Consensus 382 fea~~~~~Vt~VnfskNqL~--------------elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~ 446 (565)
T KOG0472|consen 382 FEAAKSEIVTSVNFSKNQLC--------------ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNL 446 (565)
T ss_pred HHHhhhcceEEEecccchHh--------------hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccch
Confidence 3221 12445555555554 44444444433332 333333332 455555555555555555555
Q ss_pred ccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCc
Q 038858 523 LHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNK 602 (740)
Q Consensus 523 l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 602 (740)
+.+ .|..+.. +-.|+.||++.|++. ..|..+..+..|+.+-.++|++....++.+.++.+|..|||.+|.
T Consensus 447 Ln~-LP~e~~~--------lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNd 516 (565)
T KOG0472|consen 447 LND-LPEEMGS--------LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNND 516 (565)
T ss_pred hhh-cchhhhh--------hhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCc
Confidence 542 2323322 234555555555554 444444444445555555555555555555555555555555555
Q ss_pred CCccCchhhhcCCCCCEEEccCCccc
Q 038858 603 LNGKIPCQLVELNALVVFSVAYNNLS 628 (740)
Q Consensus 603 l~~~~~~~~~~l~~L~~L~l~~N~l~ 628 (740)
+. .+|..++++.+|++|++++|++.
T Consensus 517 lq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 517 LQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hh-hCChhhccccceeEEEecCCccC
Confidence 54 44445555555555555555555
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3.3e-39 Score=309.51 Aligned_cols=389 Identities=26% Similarity=0.376 Sum_probs=217.1
Q ss_pred hhcCCCCCCEEEccCCCCcccCchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCC
Q 038858 226 FLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILP 305 (740)
Q Consensus 226 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 305 (740)
.++.+..++.++..+|++. ..|+.+ ..+.++..+++.+|++....+..+. ++.|++||...|.+. .+|+.++. +.
T Consensus 132 ~i~~~~~l~dl~~~~N~i~-slp~~~-~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~-l~ 206 (565)
T KOG0472|consen 132 SIGRLLDLEDLDATNNQIS-SLPEDM-VNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGG-LE 206 (565)
T ss_pred hHHHHhhhhhhhccccccc-cCchHH-HHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcc-hh
Confidence 3444445555555555555 444443 3455555555555555443333333 555555555555544 55555444 44
Q ss_pred CCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEc
Q 038858 306 SLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLL 385 (740)
Q Consensus 306 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 385 (740)
+|+-|++..|++. ..| .|.+|..|+++.++.|.+. .+|.....+++++..||++.|+++.. |..+.-+.+|+.||+
T Consensus 207 ~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~-Pde~clLrsL~rLDl 282 (565)
T KOG0472|consen 207 SLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEV-PDEICLLRSLERLDL 282 (565)
T ss_pred hhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccC-chHHHHhhhhhhhcc
Confidence 5555555555554 233 3555555555555555554 55555444455555555555554432 222333444444444
Q ss_pred cCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCc--cCcceeec--cCCccc---------CC-CCcc---ccC
Q 038858 386 EDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNL--TGLQYIII--PENHLE---------GP-IPVA---FCQ 448 (740)
Q Consensus 386 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l--~~L~~L~l--~~n~~~---------~~-~~~~---~~~ 448 (740)
++|.+++ .|..++++ .|+.|.+.+|++..+-.+.+.+= .-|++|.= ..-.++ .. .+.. ...
T Consensus 283 SNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~ 360 (565)
T KOG0472|consen 283 SNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYA 360 (565)
T ss_pred cCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhh
Confidence 4444432 22334444 44444444444431111111000 00111100 000000 00 0000 112
Q ss_pred CCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhcccc---CcEEEcccccccccccccccCCCcccE-EeCCCcccc
Q 038858 449 LDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLR---LSHLILAHNNLEGEVPVQLCGLNQLQL-LDLSDNKLH 524 (740)
Q Consensus 449 ~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~---L~~L~L~~n~l~~~~~~~l~~l~~L~~-L~L~~n~l~ 524 (740)
+.+.+.|++++-+++ .+|+....-.. .+..+++.|.+. ..|..+..+..+.+ +.+++|.+
T Consensus 361 ~i~tkiL~~s~~qlt--------------~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i- 424 (565)
T KOG0472|consen 361 IITTKILDVSDKQLT--------------LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI- 424 (565)
T ss_pred hhhhhhhcccccccc--------------cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-
Confidence 234444444444443 33332222222 455666666665 44544444444332 33444433
Q ss_pred CCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCC
Q 038858 525 GLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLN 604 (740)
Q Consensus 525 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 604 (740)
+.+|.. +..+++|+.|++++|.+. .+|..++.+..|+.|+++.|++. ..|.....+..++.+-.++|++.
T Consensus 425 sfv~~~--------l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~ 494 (565)
T KOG0472|consen 425 SFVPLE--------LSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIG 494 (565)
T ss_pred ccchHH--------HHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccccc
Confidence 244433 344789999999999998 78888999999999999999998 67888888888888888899999
Q ss_pred ccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCC
Q 038858 605 GKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFL 652 (740)
Q Consensus 605 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~ 652 (740)
...|..+..+..|++||+.+|.+...+|. ++.+++++++.+.||||.
T Consensus 495 ~vd~~~l~nm~nL~tLDL~nNdlq~IPp~-LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 495 SVDPSGLKNMRNLTTLDLQNNDLQQIPPI-LGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccChHHhhhhhhcceeccCCCchhhCChh-hccccceeEEEecCCccC
Confidence 88888799999999999999999966555 699999999999999998
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=4e-35 Score=309.77 Aligned_cols=484 Identities=25% Similarity=0.296 Sum_probs=277.6
Q ss_pred EECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCCCCEEecCCCccccCccchHHHhccCCCCcEEEc
Q 038858 37 LTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSL 116 (740)
Q Consensus 37 L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~L 116 (740)
+|++.+.+.-. +..+.. -..++.|++.+|.+. ..|.+...+..+|+.||+++|++ ..++..+.. +++|+.|++
T Consensus 3 vd~s~~~l~~i-p~~i~~-~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~---~~fp~~it~-l~~L~~ln~ 75 (1081)
T KOG0618|consen 3 VDASDEQLELI-PEQILN-NEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQI---SSFPIQITL-LSHLRQLNL 75 (1081)
T ss_pred cccccccCccc-chhhcc-HHHHHhhhccccccc-cCchHHhhheeeeEEeecccccc---ccCCchhhh-HHHHhhccc
Confidence 45566655433 443333 234778888887765 33344455555688888888754 467777777 788888888
Q ss_pred cCcccccCCCCCCccccCCCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCccccCCCchhhcccccccchhcc
Q 038858 117 SYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEIT 196 (740)
Q Consensus 117 s~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~ 196 (740)
+.|.+. ..|. ..+++.+|+++.|.+|.+. ..|..+..+++|++|++++|.+. .
T Consensus 76 s~n~i~----~vp~-s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~-------------------- 128 (1081)
T KOG0618|consen 76 SRNYIR----SVPS-SCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-P-------------------- 128 (1081)
T ss_pred chhhHh----hCch-hhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-C--------------------
Confidence 887765 5554 6777788888888888776 67777888888888888888764 2
Q ss_pred cccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCchHhhhcCCCCCEEeccCCcccCCCCCCC
Q 038858 197 ESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPI 276 (740)
Q Consensus 197 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 276 (740)
+|..+..+..++.+..++|.-.... +.. .++.+++..+.+.+.+...+
T Consensus 129 --------------------------~Pl~i~~lt~~~~~~~s~N~~~~~l-----g~~-~ik~~~l~~n~l~~~~~~~i 176 (1081)
T KOG0618|consen 129 --------------------------IPLVIEVLTAEEELAASNNEKIQRL-----GQT-SIKKLDLRLNVLGGSFLIDI 176 (1081)
T ss_pred --------------------------CchhHHhhhHHHHHhhhcchhhhhh-----ccc-cchhhhhhhhhcccchhcch
Confidence 2223344445555556665211111 111 15556666665555555444
Q ss_pred CCCCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccC
Q 038858 277 HSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNL 356 (740)
Q Consensus 277 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 356 (740)
..+.. .|++.+|.+. .. ... .+++|+.|....|++.... -.-++|+.|+.++|.+. .+.... .-.+|
T Consensus 177 ~~l~~--~ldLr~N~~~-~~--dls-~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~-~~~~~p--~p~nl 243 (1081)
T KOG0618|consen 177 YNLTH--QLDLRYNEME-VL--DLS-NLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLT-TLDVHP--VPLNL 243 (1081)
T ss_pred hhhhe--eeecccchhh-hh--hhh-hccchhhhhhhhcccceEE----ecCcchheeeeccCcce-eecccc--ccccc
Confidence 44444 4666666554 11 111 1456666666666554221 12345666666666665 222211 13456
Q ss_pred cEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCC
Q 038858 357 EILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPEN 436 (740)
Q Consensus 357 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n 436 (740)
+++++++|++...+ +.+..+.+|+.+...+|.+. .+|..+...++|+.|.+..|.+. .+|....+++.|++|++..|
T Consensus 244 ~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 244 QYLDISHNNLSNLP-EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred eeeecchhhhhcch-HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhc
Confidence 66666666665544 55555666666666666663 33444555566666666666665 44555555666666666666
Q ss_pred cccCCCCccccCCC-CccEEeccCCcCCCCCCCCCCCCcCCccCch-hhhccccCcEEEcccccccccccccccCCCccc
Q 038858 437 HLEGPIPVAFCQLD-SLQILGISDNNISGSLPSYLSYNRLNGSIPD-RIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQ 514 (740)
Q Consensus 437 ~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 514 (740)
++....+..+.... +|+.|+.+.|++. ..|. .=..+..|+.|.+.+|.++...-..+.+.++|+
T Consensus 321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~--------------~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLK 386 (1081)
T KOG0618|consen 321 NLPSLPDNFLAVLNASLNTLNVSSNKLS--------------TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLK 386 (1081)
T ss_pred cccccchHHHhhhhHHHHHHhhhhcccc--------------ccccccchhhHHHHHHHHhcCcccccchhhhcccccee
Confidence 66533332232222 2555555555554 1110 001234566677777777665555666666777
Q ss_pred EEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCc
Q 038858 515 LLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIE 594 (740)
Q Consensus 515 ~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 594 (740)
.|+|++|++...+...+.. ++.|++|+||+|+++ .+|+.+..+..|++|...+|.+.. .| .+..++.|+
T Consensus 387 VLhLsyNrL~~fpas~~~k--------le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fP-e~~~l~qL~ 455 (1081)
T KOG0618|consen 387 VLHLSYNRLNSFPASKLRK--------LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FP-ELAQLPQLK 455 (1081)
T ss_pred eeeecccccccCCHHHHhc--------hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-ch-hhhhcCcce
Confidence 7777777665444433333 556677777777766 455666666777777776666663 33 666667777
Q ss_pred EEECCCCcCCccCchhhhcCCCCCEEEccCCcc
Q 038858 595 SLDLYHNKLNGKIPCQLVELNALVVFSVAYNNL 627 (740)
Q Consensus 595 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 627 (740)
.+|+|.|.++...-..-...++|++||+++|.-
T Consensus 456 ~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 456 VLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred EEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 777777766533222222226677777777753
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=1.5e-34 Score=305.46 Aligned_cols=508 Identities=24% Similarity=0.268 Sum_probs=303.7
Q ss_pred EEeCCCCCCCCCCCCCccccCCCCCCcEEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCCCCEEe
Q 038858 9 TLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLD 88 (740)
Q Consensus 9 ~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 88 (740)
.+|.|+..+.-+ | ..+-.-..+..|+++.|-+...-.+.+.. .-+|+.|++++|.+. ..|. .+..+.+|+.|+
T Consensus 2 ~vd~s~~~l~~i-p---~~i~~~~~~~~ln~~~N~~l~~pl~~~~~-~v~L~~l~lsnn~~~-~fp~-~it~l~~L~~ln 74 (1081)
T KOG0618|consen 2 HVDASDEQLELI-P---EQILNNEALQILNLRRNSLLSRPLEFVEK-RVKLKSLDLSNNQIS-SFPI-QITLLSHLRQLN 74 (1081)
T ss_pred CcccccccCccc-c---hhhccHHHHHhhhccccccccCchHHhhh-eeeeEEeeccccccc-cCCc-hhhhHHHHhhcc
Confidence 356666666555 2 33444445888888888765544555555 445999999999887 4443 377888999999
Q ss_pred cCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCccccccCccccCCCCCCEEEc
Q 038858 89 MNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDV 168 (740)
Q Consensus 89 L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L 168 (740)
++.|.|. ..+..... +.+|++|+|.+|... .+|. .+..+++|++|+++.|.+. ..|..+..++.++.++.
T Consensus 75 ~s~n~i~---~vp~s~~~-~~~l~~lnL~~n~l~----~lP~-~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~ 144 (1081)
T KOG0618|consen 75 LSRNYIR---SVPSSCSN-MRNLQYLNLKNNRLQ----SLPA-SISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAA 144 (1081)
T ss_pred cchhhHh---hCchhhhh-hhcchhheeccchhh----cCch-hHHhhhcccccccchhccC-CCchhHHhhhHHHHHhh
Confidence 9998664 44566666 889999999988775 6666 8888999999999999887 67888888888888888
Q ss_pred cCCcCccccCCCchhhcccccccchhcccccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCc
Q 038858 169 SSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFP 248 (740)
Q Consensus 169 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 248 (740)
++|.....++.. .++.+++ ..+...+.++..+..+.. .|++.+|.+. ...
T Consensus 145 s~N~~~~~lg~~--------------------------~ik~~~l-~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d 194 (1081)
T KOG0618|consen 145 SNNEKIQRLGQT--------------------------SIKKLDL-RLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD 194 (1081)
T ss_pred hcchhhhhhccc--------------------------cchhhhh-hhhhcccchhcchhhhhe--eeecccchhh-hhh
Confidence 888322122110 2344444 333333344444444444 5777777765 111
Q ss_pred hHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCC
Q 038858 249 NWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNM 328 (740)
Q Consensus 249 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l 328 (740)
...+++|+.|....|++..... ..++|+.|+.+.|.++ ...... ...+++++++++|+++ ..|+++..+
T Consensus 195 ---ls~~~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~-~~~~~p--~p~nl~~~dis~n~l~-~lp~wi~~~ 263 (1081)
T KOG0618|consen 195 ---LSNLANLEVLHCERNQLSELEI----SGPSLTALYADHNPLT-TLDVHP--VPLNLQYLDISHNNLS-NLPEWIGAC 263 (1081)
T ss_pred ---hhhccchhhhhhhhcccceEEe----cCcchheeeeccCcce-eecccc--ccccceeeecchhhhh-cchHHHHhc
Confidence 2566777777777766553221 2356777777777665 221111 1346777777777776 355777777
Q ss_pred CCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCC-CCeE
Q 038858 329 NFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLS-LEGL 407 (740)
Q Consensus 329 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L 407 (740)
.+|+.++..+|.++ .+|..++ ...+|+.|.+..|.+.... .....++.|++|++..|.+....+..+..... |..|
T Consensus 264 ~nle~l~~n~N~l~-~lp~ri~-~~~~L~~l~~~~nel~yip-~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~l 340 (1081)
T KOG0618|consen 264 ANLEALNANHNRLV-ALPLRIS-RITSLVSLSAAYNELEYIP-PFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTL 340 (1081)
T ss_pred ccceEecccchhHH-hhHHHHh-hhhhHHHHHhhhhhhhhCC-CcccccceeeeeeehhccccccchHHHhhhhHHHHHH
Confidence 77777777777775 6666655 4566666666666665432 33344566666666666655433322322222 4445
Q ss_pred EccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccc
Q 038858 408 HLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLL 487 (740)
Q Consensus 408 ~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~ 487 (740)
+.+.|.+.......=...+.|+.|++.+|.+++..-..+.+.++|+.|++++
T Consensus 341 n~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy---------------------------- 392 (1081)
T KOG0618|consen 341 NVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY---------------------------- 392 (1081)
T ss_pred hhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc----------------------------
Confidence 5555544321111111234455555555555444334444444555555554
Q ss_pred cCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCC
Q 038858 488 RLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLT 567 (740)
Q Consensus 488 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 567 (740)
|.+...+...+.+++.|+.|+||||+++. +|.+... +..|+.|...+|.+. ..| .+..++
T Consensus 393 ---------NrL~~fpas~~~kle~LeeL~LSGNkL~~-Lp~tva~--------~~~L~tL~ahsN~l~-~fP-e~~~l~ 452 (1081)
T KOG0618|consen 393 ---------NRLNSFPASKLRKLEELEELNLSGNKLTT-LPDTVAN--------LGRLHTLRAHSNQLL-SFP-ELAQLP 452 (1081)
T ss_pred ---------cccccCCHHHHhchHHhHHHhcccchhhh-hhHHHHh--------hhhhHHHhhcCCcee-ech-hhhhcC
Confidence 44443333334445555555555555542 2233332 345555555555555 455 667777
Q ss_pred cCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCC
Q 038858 568 RIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYN 625 (740)
Q Consensus 568 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 625 (740)
+|+.+|++.|+++......-...++|++||+++|.-.......|..+.++...++.-|
T Consensus 453 qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 453 QLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred cceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 8888888888777544433333478888888888755466666777777777777666
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=5.6e-33 Score=280.38 Aligned_cols=365 Identities=28% Similarity=0.386 Sum_probs=189.8
Q ss_pred CCCCEEEccCCCCcc-cCchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcE
Q 038858 231 NKLEDVDLSHIKMNG-EFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSS 309 (740)
Q Consensus 231 ~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 309 (740)
+..+-.|+++|.++| .+|... ..+++++.|.+...++.. .|..++.+.+|++|.+++|++. .+...+.. +|.|+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v-~qMt~~~WLkLnrt~L~~-vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~-Lp~LRs 82 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDV-EQMTQMTWLKLNRTKLEQ-VPEELSRLQKLEHLSMAHNQLI-SVHGELSD-LPRLRS 82 (1255)
T ss_pred ceeecccccCCcCCCCcCchhH-HHhhheeEEEechhhhhh-ChHHHHHHhhhhhhhhhhhhhH-hhhhhhcc-chhhHH
Confidence 445566666666663 345443 566666666666555543 3445555566666666666555 33333333 556666
Q ss_pred EEccCCcCc-ccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCC
Q 038858 310 FNISMNALD-GSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDN 388 (740)
Q Consensus 310 L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 388 (740)
+.+..|++. .-+|..+-.+..|+.||||+|++. +.|..+. ...++-.|+|++|+|..++...|.+++.|-.|++++|
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE-~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLE-YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhh-hhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 666665544 234444555666666666666665 5555543 4555566666666666555555555556666666666
Q ss_pred cccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCccc-CCCCccccCCCCccEEeccCCcCCCCCC
Q 038858 389 HFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLE-GPIPVAFCQLDSLQILGISDNNISGSLP 467 (740)
Q Consensus 389 ~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 467 (740)
++.. +|..+..+..|++|++++|++.......+..+++|+.|.+++.+-+ .-+|.++..+.+|..+|++.|.+.
T Consensus 161 rLe~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp---- 235 (1255)
T KOG0444|consen 161 RLEM-LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP---- 235 (1255)
T ss_pred hhhh-cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC----
Confidence 5543 3334555555666666666554333333444455555555554322 234444555555555555555554
Q ss_pred CCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccce
Q 038858 468 SYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSG 547 (740)
Q Consensus 468 ~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~ 547 (740)
.+|+.+-.+++|+.|+|++|+++ ..........+|++|++|.|+++ ..|.++.. ++.|+.
T Consensus 236 ----------~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK--------L~kL~k 295 (1255)
T KOG0444|consen 236 ----------IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCK--------LTKLTK 295 (1255)
T ss_pred ----------cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhh--------hHHHHH
Confidence 45555555555555555555554 22222333344555555555554 23333322 345555
Q ss_pred EEccCccccc-cCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCc
Q 038858 548 IDLSCNKLIG-DIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNN 626 (740)
Q Consensus 548 L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 626 (740)
|++.+|+++. -+|..++.+.+|+.+..++|.+. ..|.++..+..|+.|.|++|++. .+|+.+.-++.|+.||+..|+
T Consensus 296 Ly~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 296 LYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred HHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 5555555442 23444555555555555555444 44555555555555555555554 445555555555555555554
Q ss_pred cc
Q 038858 627 LS 628 (740)
Q Consensus 627 l~ 628 (740)
=.
T Consensus 374 nL 375 (1255)
T KOG0444|consen 374 NL 375 (1255)
T ss_pred Cc
Confidence 43
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2.6e-32 Score=275.56 Aligned_cols=385 Identities=27% Similarity=0.352 Sum_probs=327.4
Q ss_pred cccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEe
Q 038858 207 QLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLD 286 (740)
Q Consensus 207 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 286 (740)
-.+..+++++....+.+|.....++.++.|.+....+. .+|+.+ +.+.+|++|.+++|++.... ..++.++.|+.++
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~vh-GELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLISVH-GELSDLPRLRSVI 84 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHhhh-hhhccchhhHHHh
Confidence 45667775665666889999999999999999998887 788886 89999999999999987643 4678899999999
Q ss_pred ccCCcCcc-cCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCcc
Q 038858 287 VSNNNFQG-RIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNN 365 (740)
Q Consensus 287 l~~n~l~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 365 (740)
+..|++.. -+|..+|. +..|+.|+|++|+++ ..|..+..-+++-+|+||+|+|. .+|..+|.++..|-.|+|++|+
T Consensus 85 ~R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred hhccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccch
Confidence 99998764 47888988 899999999999999 68888999999999999999998 9999999999999999999999
Q ss_pred ccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCc-ccCCCCCCCccCcceeeccCCcccCCCCc
Q 038858 366 LEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLS-GKIPQWLGNLTGLQYIIIPENHLEGPIPV 444 (740)
Q Consensus 366 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 444 (740)
+...+ .....+..|++|.+++|++....-..+..+++|++|.+++.+-+ .-+|..+..+.+|..++++.|.+. ..|+
T Consensus 162 Le~LP-PQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPe 239 (1255)
T KOG0444|consen 162 LEMLP-PQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPE 239 (1255)
T ss_pred hhhcC-HHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchH
Confidence 98654 45668899999999999987655556777888999999987653 367889999999999999999998 7889
Q ss_pred cccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCcccc
Q 038858 445 AFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLH 524 (740)
Q Consensus 445 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 524 (740)
.+..+++|+.|++++|+++ .+........+|++|+++.|.++ ..|..++.+++|+.|...+|+++
T Consensus 240 cly~l~~LrrLNLS~N~it--------------eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNLSGNKIT--------------ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred HHhhhhhhheeccCcCcee--------------eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCccc
Confidence 9999999999999999998 44444556689999999999998 88999999999999999999986
Q ss_pred C-CCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcC
Q 038858 525 G-LIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKL 603 (740)
Q Consensus 525 ~-~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 603 (740)
- -+|..++. +..|+.+..++|.+. ..|+.+..|..|+.|.|++|++- ..|++++-++.|+.||+..|+-
T Consensus 305 FeGiPSGIGK--------L~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 305 FEGIPSGIGK--------LIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred ccCCccchhh--------hhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence 2 34555544 678999999999998 89999999999999999999988 6799999999999999999977
Q ss_pred CccCchhhhcCCCCCEEEccC
Q 038858 604 NGKIPCQLVELNALVVFSVAY 624 (740)
Q Consensus 604 ~~~~~~~~~~l~~L~~L~l~~ 624 (740)
.-..|.--..-.+|+.-++..
T Consensus 375 LVMPPKP~da~~~lefYNIDF 395 (1255)
T KOG0444|consen 375 LVMPPKPNDARKKLEFYNIDF 395 (1255)
T ss_pred ccCCCCcchhhhcceeeecce
Confidence 644443323335666655554
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=1.5e-26 Score=222.51 Aligned_cols=100 Identities=25% Similarity=0.310 Sum_probs=92.9
Q ss_pred cCC-cCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCc
Q 038858 558 DIP-PQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTT 636 (740)
Q Consensus 558 ~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 636 (740)
.-| ..|..+++|++|+|++|+++++-+.+|.+...+++|.|..|++...-...|..+..|+.|++.+|+|+...|.+|.
T Consensus 264 ~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~ 343 (498)
T KOG4237|consen 264 ICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ 343 (498)
T ss_pred cChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccc
Confidence 444 4689999999999999999999999999999999999999999877788899999999999999999999999999
Q ss_pred cccCCCccccCCCCCCCCCCC
Q 038858 637 QFATFNESNYKGNPFLCGLPL 657 (740)
Q Consensus 637 ~~~~l~~~~~~~Np~~C~~~~ 657 (740)
...++..+.+-+|||.|+|.+
T Consensus 344 ~~~~l~~l~l~~Np~~CnC~l 364 (498)
T KOG4237|consen 344 TLFSLSTLNLLSNPFNCNCRL 364 (498)
T ss_pred ccceeeeeehccCcccCccch
Confidence 999999999999999999975
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=1.4e-22 Score=241.10 Aligned_cols=344 Identities=20% Similarity=0.210 Sum_probs=234.1
Q ss_pred hhcCCCCCEEeccCCccc------CCCCCCCCCC-CCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCcc
Q 038858 252 LENNTKLESLSLVNDSLA------GPFRLPIHSH-KSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSS 324 (740)
Q Consensus 252 ~~~l~~L~~L~l~~~~~~------~~~~~~l~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 324 (740)
+..+++|+.|.+..+... ...+..+..+ ++|+.|.+.++.+. .+|..+. +.+|++|++.+|.+. .++..
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f~--~~~L~~L~L~~s~l~-~L~~~ 629 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNFR--PENLVKLQMQGSKLE-KLWDG 629 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcCC--ccCCcEEECcCcccc-ccccc
Confidence 467788888877655321 1223333333 45788888877776 6776653 567888888887776 45666
Q ss_pred ccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCC
Q 038858 325 FGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSL 404 (740)
Q Consensus 325 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 404 (740)
+..+++|+.|+++++.....+|. +..+++|++|++++|......+..+..+++|+.|++++|...+.+|..+ .+++|
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL 706 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL 706 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence 77778888888877654446664 2357778888888776555566667777888888888776655666544 67778
Q ss_pred CeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhh
Q 038858 405 EGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRID 484 (740)
Q Consensus 405 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~ 484 (740)
++|++++|......|.. ..+|+.|++++|.+. ..|..+ .+++|+.|++.++..... + +.+....+..+.
T Consensus 707 ~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l-~-----~~~~~l~~~~~~ 775 (1153)
T PLN03210 707 YRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKL-W-----ERVQPLTPLMTM 775 (1153)
T ss_pred CEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhc-c-----ccccccchhhhh
Confidence 88888877654444432 356777888887776 344333 466777777766442210 0 011111222233
Q ss_pred ccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCcc
Q 038858 485 GLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIG 564 (740)
Q Consensus 485 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 564 (740)
..++|+.|++++|.....+|..++++++|+.|++++|...+.+|... . +++|+.|++++|.....+|..
T Consensus 776 ~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~--------L~sL~~L~Ls~c~~L~~~p~~-- 844 (1153)
T PLN03210 776 LSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N--------LESLESLDLSGCSRLRTFPDI-- 844 (1153)
T ss_pred ccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C--------ccccCEEECCCCCcccccccc--
Confidence 45789999999988777788889999999999999886544555443 1 578999999998765555543
Q ss_pred CCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCc
Q 038858 565 NLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNN 626 (740)
Q Consensus 565 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 626 (740)
.++|+.|+|++|.++ .+|..+..+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus 845 -~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 845 -STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred -ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 367899999999988 567888899999999998864444677777888899999998885
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=8.5e-22 Score=234.53 Aligned_cols=339 Identities=20% Similarity=0.219 Sum_probs=221.8
Q ss_pred hhhcCCCCCCEEEccCCCC------cccCchHhhhcC-CCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCC
Q 038858 225 KFLHHQNKLEDVDLSHIKM------NGEFPNWLLENN-TKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIP 297 (740)
Q Consensus 225 ~~l~~~~~L~~L~l~~~~~------~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 297 (740)
..+..+.+|+.|.+..+.. ...+|..+ ..+ ++|+.|.+.++.+... |..+ ...+|++|++.++.+. .++
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~-~~lp~~Lr~L~~~~~~l~~l-P~~f-~~~~L~~L~L~~s~l~-~L~ 627 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGF-DYLPPKLRLLRWDKYPLRCM-PSNF-RPENLVKLQMQGSKLE-KLW 627 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcch-hhcCcccEEEEecCCCCCCC-CCcC-CccCCcEEECcCcccc-ccc
Confidence 4466777888887755432 22345544 333 4588888887766543 3333 4577888888888776 566
Q ss_pred hhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCC
Q 038858 298 AEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNL 377 (740)
Q Consensus 298 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 377 (740)
..+.. +++|+.|+++++.....+|. +..+++|+.|++++|.....+|..+. .+++|+.|++++|......+..+ ++
T Consensus 628 ~~~~~-l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~-~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 628 DGVHS-LTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQ-YLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred ccccc-CCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhh-ccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 55543 77888888887654445554 67778888888888765556776654 67888888888765333333333 67
Q ss_pred CCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCccc-------CCCCccccCCC
Q 038858 378 TKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLE-------GPIPVAFCQLD 450 (740)
Q Consensus 378 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~-------~~~~~~~~~~~ 450 (740)
++|+.|++++|......|.. ..+|++|++++|.+. .+|..+ .+++|++|.+.++... ...+..+..++
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccc
Confidence 78888888887665554432 356788888888776 455444 4677777777664321 11122223356
Q ss_pred CccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCc
Q 038858 451 SLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPC 530 (740)
Q Consensus 451 ~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 530 (740)
+|+.|++++|...+ .+|..+.++++|+.|++++|...+.+|... ++++|+.|++++|......|..
T Consensus 779 sL~~L~Ls~n~~l~-------------~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~ 844 (1153)
T PLN03210 779 SLTRLFLSDIPSLV-------------ELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI 844 (1153)
T ss_pred cchheeCCCCCCcc-------------ccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc
Confidence 78888888776542 456667778888888888875444555554 5778888888887644333321
Q ss_pred ccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCc
Q 038858 531 FDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNK 602 (740)
Q Consensus 531 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 602 (740)
..+|+.|++++|.+. .+|..+..+++|+.|+|++|+-...+|..+..+++|+.+++++|.
T Consensus 845 -----------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 845 -----------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred -----------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 246788888888877 567777788888888888764443566667778888888888774
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=1.4e-25 Score=215.96 Aligned_cols=252 Identities=24% Similarity=0.276 Sum_probs=170.2
Q ss_pred CCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeec-ccCCCccChhhhhcCccCcE
Q 038858 280 KSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSN-NHLTGEIPEHLAIGCVNLEI 358 (740)
Q Consensus 280 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~ 358 (740)
+.-.+++|..|+|+ .+|...|..+++|+.|+|++|.|+.+.|++|.++++|..|.+.+ |+|+ .+|...|.++.+++.
T Consensus 67 ~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 67 PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQR 144 (498)
T ss_pred CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHH
Confidence 56678899999998 88998888899999999999999999999999999888877776 8888 899999989999999
Q ss_pred EEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCc------------ccCCCCCCCcc
Q 038858 359 LVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLS------------GKIPQWLGNLT 426 (740)
Q Consensus 359 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~------------~~~~~~l~~l~ 426 (740)
|.+.-|++..+..+.|..++++..|.+.+|.+..+....|..+.+++.+.+..|... ...+..+++..
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 999999988888888888999999999999887776668888888888888877631 12222333333
Q ss_pred CcceeeccCCcccCCCC--------------------------ccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCc
Q 038858 427 GLQYIIIPENHLEGPIP--------------------------VAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIP 480 (740)
Q Consensus 427 ~L~~L~l~~n~~~~~~~--------------------------~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~ 480 (740)
......+.+.++..+.+ ..|..+++|++|++++|+++ +.-+
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-------------~i~~ 291 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-------------RIED 291 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-------------hhhh
Confidence 22222222222221111 23445555555555555544 2334
Q ss_pred hhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCcc
Q 038858 481 DRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNK 554 (740)
Q Consensus 481 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 554 (740)
.+|.+...+++|.|..|++..+....|.++..|+.|+|.+|+|+...|..|.. +.+|.+|++-.|.
T Consensus 292 ~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~--------~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 292 GAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQT--------LFSLSTLNLLSNP 357 (498)
T ss_pred hhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccc--------cceeeeeehccCc
Confidence 45555555555555555555444455555555555555555555555555544 3355555554443
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=2.2e-20 Score=205.78 Aligned_cols=154 Identities=24% Similarity=0.309 Sum_probs=83.8
Q ss_pred CcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEE
Q 038858 281 SLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILV 360 (740)
Q Consensus 281 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 360 (740)
.-..|+++++.++ .+|..+. ++|+.|++.+|+++. +|. .+++|++|++++|+++ .+|.. .++|+.|+
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~ 268 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL----PPGLLELS 268 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc----ccccceee
Confidence 3456777777776 6666543 367777777777763 443 2466777777777776 55532 34666666
Q ss_pred cCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccC
Q 038858 361 LSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEG 440 (740)
Q Consensus 361 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~ 440 (740)
+++|.+..... .+++|+.|++++|++... |. ..++|+.|++++|.+++ +|.. ...|+.|++++|.+++
T Consensus 269 Ls~N~L~~Lp~----lp~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~ 336 (788)
T PRK15387 269 IFSNPLTHLPA----LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS 336 (788)
T ss_pred ccCCchhhhhh----chhhcCEEECcCCccccc-cc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc
Confidence 66666654321 124556666666665532 21 12456666666665552 2321 1235555555555543
Q ss_pred CCCccccCCCCccEEeccCCcCC
Q 038858 441 PIPVAFCQLDSLQILGISDNNIS 463 (740)
Q Consensus 441 ~~~~~~~~~~~L~~L~l~~n~l~ 463 (740)
+|. ...+|+.|++++|+++
T Consensus 337 -LP~---lp~~Lq~LdLS~N~Ls 355 (788)
T PRK15387 337 -LPT---LPSGLQELSVSDNQLA 355 (788)
T ss_pred -ccc---cccccceEecCCCccC
Confidence 221 1134555555555554
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=5.8e-20 Score=202.38 Aligned_cols=261 Identities=25% Similarity=0.319 Sum_probs=116.7
Q ss_pred CcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEcc
Q 038858 307 LSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLE 386 (740)
Q Consensus 307 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 386 (740)
-..|+++.+.++ .+|..+. ++|+.|++++|+++ .+|.. .++|++|++++|+++.++. ..++|+.|+++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l----p~~Lk~LdLs~N~LtsLP~----lp~sL~~L~Ls 270 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL----PPELRTLEVSGNQLTSLPV----LPPGLLELSIF 270 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC----CCCCcEEEecCCccCcccC----cccccceeecc
Confidence 344555555554 3444332 24555555555554 34431 3455555555555543321 12445555555
Q ss_pred CCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCC
Q 038858 387 DNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSL 466 (740)
Q Consensus 387 ~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 466 (740)
+|.+... |.. ..+|+.|++++|.++ .+|. ..++|+.|++++|++++. |.. ..+|+.|++++|.++
T Consensus 271 ~N~L~~L-p~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~--- 335 (788)
T PRK15387 271 SNPLTHL-PAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLT--- 335 (788)
T ss_pred CCchhhh-hhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCccccC-CCC---cccccccccccCccc---
Confidence 5554322 111 134455555555554 2222 124455555555555432 211 123445555555543
Q ss_pred CCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccc
Q 038858 467 PSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLS 546 (740)
Q Consensus 467 ~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~ 546 (740)
.+|.. ..+|+.|++++|++++ +|.. .++|+.|++++|.+.. +|.. .++|+
T Consensus 336 -----------~LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l-----------~~~L~ 385 (788)
T PRK15387 336 -----------SLPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL-----------PSGLK 385 (788)
T ss_pred -----------ccccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc-----------ccccc
Confidence 11210 1245555555555542 2221 2344555555555543 2211 12455
Q ss_pred eEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCc
Q 038858 547 GIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNN 626 (740)
Q Consensus 547 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 626 (740)
.|++++|.+++ +|.. .++|+.|++++|.+++ +|.. ..+|+.|++++|+++ .+|..+..+++|+.+++++|+
T Consensus 386 ~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 386 ELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred eEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCC
Confidence 55555555552 2321 1345555555555553 2322 124455555555555 445555555555555555555
Q ss_pred ccccCCC
Q 038858 627 LSGKIPE 633 (740)
Q Consensus 627 l~~~~~~ 633 (740)
+++..|.
T Consensus 457 Ls~~~~~ 463 (788)
T PRK15387 457 LSERTLQ 463 (788)
T ss_pred CCchHHH
Confidence 5544433
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=3.2e-18 Score=190.17 Aligned_cols=247 Identities=23% Similarity=0.388 Sum_probs=156.3
Q ss_pred CCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEE
Q 038858 305 PSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLL 384 (740)
Q Consensus 305 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 384 (740)
.+...|+++++.++ .+|..+ .+.|+.|++++|+++ .+|...+ ++|++|++++|.++..+ ..+ .++|+.|+
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsLP-~~l--~~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACI--PEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSIP-ATL--PDTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcC-cCCccc--ccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccCC-hhh--hccccEEE
Confidence 35678888888887 456544 257888999999888 7777654 57888888888887543 222 34688888
Q ss_pred ccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCC
Q 038858 385 LEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISG 464 (740)
Q Consensus 385 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 464 (740)
+++|.+. .+|..+. .+|+.|++++|.+. .+|..+. ++|+.|++++|+++. +|..+ .++|+.|++++|.++
T Consensus 248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l--p~sL~~L~Ls~N~Lt- 317 (754)
T PRK15370 248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHL--PSGITHLNVQSNSLT- 317 (754)
T ss_pred CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccc--hhhHHHHHhcCCccc-
Confidence 8888876 3444443 46788888888777 4555443 467788888887774 33333 246777777777765
Q ss_pred CCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccc
Q 038858 465 SLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSL 544 (740)
Q Consensus 465 ~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~ 544 (740)
.+|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|++.. +|..+ .+.
T Consensus 318 -------------~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~~l----------p~~ 368 (754)
T PRK15370 318 -------------ALPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-LPETL----------PPT 368 (754)
T ss_pred -------------cCCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-CChhh----------cCC
Confidence 222222 1467777777777764 444332 567777777777653 33333 136
Q ss_pred cceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchh----ccCcCCCcEEECCCCcCC
Q 038858 545 LSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILST----FTNLRHIESLDLYHNKLN 604 (740)
Q Consensus 545 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~ 604 (740)
|+.|++++|.++ .+|..+. .+|+.|++++|+++. +|.. +..++.+..|++.+|+++
T Consensus 369 L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 369 ITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred cCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCcc
Confidence 777777777766 3444332 256677777777663 3332 333466667777777665
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=2.1e-18 Score=191.60 Aligned_cols=204 Identities=24% Similarity=0.353 Sum_probs=107.1
Q ss_pred CCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEc
Q 038858 330 FLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHL 409 (740)
Q Consensus 330 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 409 (740)
+|+.|++++|+++ .+|..+. ++|+.|++++|.+..++ ..+ ..+|+.|++++|++.. +|..+. ++|+.|++
T Consensus 221 nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~L~~LP-~~l--~s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~L 290 (754)
T PRK15370 221 NIKTLYANSNQLT-SIPATLP---DTIQEMELSINRITELP-ERL--PSALQSLDLFHNKISC-LPENLP--EELRYLSV 290 (754)
T ss_pred CCCEEECCCCccc-cCChhhh---ccccEEECcCCccCcCC-hhH--hCCCCEEECcCCccCc-cccccC--CCCcEEEC
Confidence 4444444444444 3343221 23444444444444221 111 1245555555555542 233222 35666666
Q ss_pred cCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccC
Q 038858 410 NNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRL 489 (740)
Q Consensus 410 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L 489 (740)
++|.++. +|..+. ++|+.|++++|.++. +|..+ .++|+.|++++|.++ .+|..+. ++|
T Consensus 291 s~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt--------------~LP~~l~--~sL 348 (754)
T PRK15370 291 YDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALT--------------SLPASLP--PEL 348 (754)
T ss_pred CCCcccc-Ccccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCccc--------------cCChhhc--Ccc
Confidence 6666552 333222 356666666666663 23222 246677777776665 2232222 467
Q ss_pred cEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcC----ccC
Q 038858 490 SHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQ----IGN 565 (740)
Q Consensus 490 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~ 565 (740)
+.|++++|.++ .+|..+ .++|+.|++++|+++.. |..+. ..|+.|++++|++. .+|.. +..
T Consensus 349 ~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~L-P~~l~----------~sL~~LdLs~N~L~-~LP~sl~~~~~~ 413 (754)
T PRK15370 349 QVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNL-PENLP----------AALQIMQASRNNLV-RLPESLPHFRGE 413 (754)
T ss_pred cEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCC-CHhHH----------HHHHHHhhccCCcc-cCchhHHHHhhc
Confidence 77777777766 344433 25677777777777643 33322 25777777777776 34443 333
Q ss_pred CCcCcEEeCcCCcCC
Q 038858 566 LTRIQTLNLSHNNLT 580 (740)
Q Consensus 566 l~~L~~L~L~~n~l~ 580 (740)
++.+..|++.+|.++
T Consensus 414 ~~~l~~L~L~~Npls 428 (754)
T PRK15370 414 GPQPTRIIVEYNPFS 428 (754)
T ss_pred CCCccEEEeeCCCcc
Confidence 467788888888876
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=6e-20 Score=190.59 Aligned_cols=90 Identities=20% Similarity=0.275 Sum_probs=53.3
Q ss_pred CccCCCcCcEEeCcCCcCCCccchhcc-----CcCCCcEEECCCCcCCc----cCchhhhcCCCCCEEEccCCccccc--
Q 038858 562 QIGNLTRIQTLNLSHNNLTGTILSTFT-----NLRHIESLDLYHNKLNG----KIPCQLVELNALVVFSVAYNNLSGK-- 630 (740)
Q Consensus 562 ~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~-- 630 (740)
.+..+++|++|++++|.+++.....+. ..+.|++|++++|.++. .+...+..+++|+++++++|+++..
T Consensus 216 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~ 295 (319)
T cd00116 216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGA 295 (319)
T ss_pred HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHH
Confidence 344556677777777766643232222 13677777777777752 2333455566777777777777643
Q ss_pred --CCCCCccc-cCCCccccCCCCC
Q 038858 631 --IPEMTTQF-ATFNESNYKGNPF 651 (740)
Q Consensus 631 --~~~~~~~~-~~l~~~~~~~Np~ 651 (740)
.......+ ..++++++.+|||
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 296 QLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHHhhcCCchhhcccCCCCC
Confidence 23333334 5667777777776
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=7.5e-19 Score=182.37 Aligned_cols=62 Identities=26% Similarity=0.326 Sum_probs=39.6
Q ss_pred CCcCcEEeCcCCcCCC----ccchhccCcCCCcEEECCCCcCCcc----CchhhhcC-CCCCEEEccCCcc
Q 038858 566 LTRIQTLNLSHNNLTG----TILSTFTNLRHIESLDLYHNKLNGK----IPCQLVEL-NALVVFSVAYNNL 627 (740)
Q Consensus 566 l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l-~~L~~L~l~~N~l 627 (740)
.+.|+.|++++|.++. .....+..+++|+++++++|.++.. ....+... +.|+.+++.+|++
T Consensus 249 ~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 249 NISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 3567777777777762 2234455667788888888887743 33333344 6777888777754
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=6e-18 Score=144.63 Aligned_cols=161 Identities=28% Similarity=0.508 Sum_probs=105.1
Q ss_pred CccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccc
Q 038858 424 NLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEV 503 (740)
Q Consensus 424 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 503 (740)
.+.+.+.|.+++|+++ ..|..+..+.+|+.|++++|++. .+|..+..+++|+.|+++-|++. ..
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie--------------~lp~~issl~klr~lnvgmnrl~-~l 94 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE--------------ELPTSISSLPKLRILNVGMNRLN-IL 94 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh--------------hcChhhhhchhhhheecchhhhh-cC
Confidence 4566677777777777 45556677777778887777776 66777777888888888888776 77
Q ss_pred cccccCCCcccEEeCCCccccC-CCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCc
Q 038858 504 PVQLCGLNQLQLLDLSDNKLHG-LIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGT 582 (740)
Q Consensus 504 ~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 582 (740)
|..|+.+|.|+.||+..|.+.. ..|+.|-. +..|+.|++++|.+. .+|..++.+++|+.|.++.|.+. .
T Consensus 95 prgfgs~p~levldltynnl~e~~lpgnff~--------m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~ 164 (264)
T KOG0617|consen 95 PRGFGSFPALEVLDLTYNNLNENSLPGNFFY--------MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-S 164 (264)
T ss_pred ccccCCCchhhhhhccccccccccCCcchhH--------HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-h
Confidence 7788888888888888877653 23333333 345566666666665 55555666666666666666555 3
Q ss_pred cchhccCcCCCcEEECCCCcCCccCchhh
Q 038858 583 ILSTFTNLRHIESLDLYHNKLNGKIPCQL 611 (740)
Q Consensus 583 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 611 (740)
.|..++.++.|++|.+.+|+++ .+|..+
T Consensus 165 lpkeig~lt~lrelhiqgnrl~-vlppel 192 (264)
T KOG0617|consen 165 LPKEIGDLTRLRELHIQGNRLT-VLPPEL 192 (264)
T ss_pred CcHHHHHHHHHHHHhcccceee-ecChhh
Confidence 4555555555555555555555 444333
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=1.2e-16 Score=136.70 Aligned_cols=164 Identities=28% Similarity=0.491 Sum_probs=98.4
Q ss_pred CCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEE
Q 038858 376 NLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQIL 455 (740)
Q Consensus 376 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 455 (740)
.+..++.|.+++|+++.. |..+..+.+|+.|++.+|++. .+|..++.++.|+.|+++-|++. ..|..|+.++.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~~v-ppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVV-PPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCceeec-CCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 455556666666666533 334556666666666666665 45555666666666666666655 555666666666666
Q ss_pred eccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccc
Q 038858 456 GISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTA 535 (740)
Q Consensus 456 ~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 535 (740)
|+.+|.+.. ..+|..|..++.|+.|.+++|.+. ..|...+.++
T Consensus 108 dltynnl~e------------~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt------------------------ 150 (264)
T KOG0617|consen 108 DLTYNNLNE------------NSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLT------------------------ 150 (264)
T ss_pred hcccccccc------------ccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhc------------------------
Confidence 666655541 133444444444444444444443 3444444444
Q ss_pred cchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccC
Q 038858 536 LHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTN 589 (740)
Q Consensus 536 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 589 (740)
+|+.|.+..|.+. ..|..++.++.|++|.+.+|+++ .+|..+++
T Consensus 151 --------~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 151 --------NLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred --------ceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence 5555555555555 66788899999999999999999 55555554
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.51 E-value=3.9e-14 Score=157.55 Aligned_cols=118 Identities=33% Similarity=0.555 Sum_probs=106.1
Q ss_pred ccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEcc
Q 038858 544 LLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVA 623 (740)
Q Consensus 544 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 623 (740)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|..+..+++|+.|+|++|++++.+|+.+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCccc-cCCCccccCCCCCCCCCCC-CCCC
Q 038858 624 YNNLSGKIPEMTTQF-ATFNESNYKGNPFLCGLPL-PICR 661 (740)
Q Consensus 624 ~N~l~~~~~~~~~~~-~~l~~~~~~~Np~~C~~~~-~~c~ 661 (740)
+|+++|.+|..+... ..+..+++.+|++.|+++. ..|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999876553 4566789999999998763 3564
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.17 E-value=2.1e-12 Score=131.54 Aligned_cols=195 Identities=28% Similarity=0.474 Sum_probs=138.2
Q ss_pred CCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCc
Q 038858 401 CLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIP 480 (740)
Q Consensus 401 l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~ 480 (740)
+.--...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..++++..|..+|++.|+++ .+|
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS--------------~lp 137 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS--------------HLP 137 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh--------------cCC
Confidence 344456777788776 66777777777888888888777 66777778888888888888876 556
Q ss_pred hhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCC
Q 038858 481 DRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIP 560 (740)
Q Consensus 481 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 560 (740)
..+..++ |+.|-+++|+++ ..|..++..+.|..||.+.|.+... |..+.. +.+|+.|.+..|.+. ..|
T Consensus 138 ~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~sl-psql~~--------l~slr~l~vrRn~l~-~lp 205 (722)
T KOG0532|consen 138 DGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSL-PSQLGY--------LTSLRDLNVRRNHLE-DLP 205 (722)
T ss_pred hhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhc-hHHhhh--------HHHHHHHHHhhhhhh-hCC
Confidence 5555554 778888888887 6666777777888888888877633 333333 567777888888877 455
Q ss_pred cCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhc---CCCCCEEEccCCc
Q 038858 561 PQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVE---LNALVVFSVAYNN 626 (740)
Q Consensus 561 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---l~~L~~L~l~~N~ 626 (740)
+.+..+ .|..||+|+|+++ .+|-.|.+|+.|++|-|.+|++. ..|..+.. ..-.++|+..-++
T Consensus 206 ~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 206 EELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred HHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 555544 3778888888887 67778888888888888888886 55655543 3445677776664
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.6e-11 Score=121.50 Aligned_cols=164 Identities=22% Similarity=0.243 Sum_probs=110.1
Q ss_pred CCCCCCEEeCCCCCCCCCCCCCccccCCCCCCcEEECCCCCCcccc-hHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCC
Q 038858 3 SFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISL-LQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHF 81 (740)
Q Consensus 3 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~-~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l 81 (740)
++++|+...|.++.+...... +....|++++.||||.|-+..-. ...+.+.+|+|+.|+++.|++........-..+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIE--EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hHHhhhheeecCccccccchh--hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 567788888887776655211 46778889999999988665432 234555588999999998887533322223356
Q ss_pred CCCCEEecCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCcccccc-CccccCC
Q 038858 82 KSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSL-PWCLANM 160 (740)
Q Consensus 82 ~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~-~~~l~~l 160 (740)
++|+.|.|+.| .++......+...+|.|+.|+|.+|... .+......-++.|+.|||++|++.+.. -...+.+
T Consensus 197 ~~lK~L~l~~C--Gls~k~V~~~~~~fPsl~~L~L~~N~~~----~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l 270 (505)
T KOG3207|consen 197 SHLKQLVLNSC--GLSWKDVQWILLTFPSLEVLYLEANEII----LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTL 270 (505)
T ss_pred hhhheEEeccC--CCCHHHHHHHHHhCCcHHHhhhhccccc----ceecchhhhhhHHhhccccCCcccccccccccccc
Confidence 78888888888 5555555555555888888888887422 122224455678888888888876432 1456778
Q ss_pred CCCCEEEccCCcCc
Q 038858 161 TSLRTLDVSSNQLT 174 (740)
Q Consensus 161 ~~L~~L~L~~n~l~ 174 (740)
+.|+.|+++.+.++
T Consensus 271 ~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIA 284 (505)
T ss_pred cchhhhhccccCcc
Confidence 88888888888765
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.12 E-value=1.1e-11 Score=116.30 Aligned_cols=131 Identities=26% Similarity=0.285 Sum_probs=82.1
Q ss_pred ccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCC
Q 038858 487 LRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNL 566 (740)
Q Consensus 487 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 566 (740)
..|+++++++|.++ .+.++..-.|.++.|++|+|.+..... + ..+++|+.||||+|.++ .+..+-..+
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n--L--------a~L~~L~~LDLS~N~Ls-~~~Gwh~KL 351 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN--L--------AELPQLQLLDLSGNLLA-ECVGWHLKL 351 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh--h--------hhcccceEeecccchhH-hhhhhHhhh
Confidence 55667777777666 455555666777777777776653221 2 22566777777777666 333444556
Q ss_pred CcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCc-hhhhcCCCCCEEEccCCcccccC
Q 038858 567 TRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIP-CQLVELNALVVFSVAYNNLSGKI 631 (740)
Q Consensus 567 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~ 631 (740)
-+.++|.|+.|.|.. ..+++++-+|..||+++|+|..... ..++++|.|+.+.+.+|++.+.+
T Consensus 352 GNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 352 GNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred cCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 667777777777754 5567777777777777777754322 34566666777777777766543
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.11 E-value=5.2e-12 Score=128.72 Aligned_cols=213 Identities=29% Similarity=0.459 Sum_probs=158.4
Q ss_pred EEcCCccccccCCcCC-CCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCc
Q 038858 359 LVLSNNNLEGHMFSKN-FNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENH 437 (740)
Q Consensus 359 L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~ 437 (740)
|.|++-+++....... ..+..-...+++.|++. .+|..+..+..|+.+.++.|.+. .+|..+..+..|+.++++.|+
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccch
Confidence 4455555554443333 23555566788888876 45666777778888889888887 778888888999999999999
Q ss_pred ccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEe
Q 038858 438 LEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLD 517 (740)
Q Consensus 438 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 517 (740)
++ ..|..++.++ |+.|-+++|+++ .+|+.++....|..|+.+.|.+. ..|..++++.+|+.|.
T Consensus 133 lS-~lp~~lC~lp-Lkvli~sNNkl~--------------~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 133 LS-HLPDGLCDLP-LKVLIVSNNKLT--------------SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLN 195 (722)
T ss_pred hh-cCChhhhcCc-ceeEEEecCccc--------------cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHH
Confidence 88 6677777665 788888988887 67777778888999999999887 6777888899999999
Q ss_pred CCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhc---cCcCCCc
Q 038858 518 LSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTF---TNLRHIE 594 (740)
Q Consensus 518 L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~ 594 (740)
+..|++....++ +.. -.|..||+|+|+++ .+|..|..++.|++|-|.+|.++. .|..+ +...--+
T Consensus 196 vrRn~l~~lp~E-l~~---------LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFK 263 (722)
T KOG0532|consen 196 VRRNHLEDLPEE-LCS---------LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFK 263 (722)
T ss_pred HhhhhhhhCCHH-HhC---------CceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeee
Confidence 999988754443 333 25888999999998 788889999999999999999885 33222 2334456
Q ss_pred EEECCCCc
Q 038858 595 SLDLYHNK 602 (740)
Q Consensus 595 ~L~Ls~N~ 602 (740)
+|+..-++
T Consensus 264 yL~~qA~q 271 (722)
T KOG0532|consen 264 YLSTQACQ 271 (722)
T ss_pred eecchhcc
Confidence 67666664
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.10 E-value=9.9e-11 Score=124.98 Aligned_cols=195 Identities=33% Similarity=0.519 Sum_probs=92.2
Q ss_pred eEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCcc-CcceeeccCCcccCCCCccccCCCCccEEeccCC
Q 038858 382 WLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLT-GLQYIIIPENHLEGPIPVAFCQLDSLQILGISDN 460 (740)
Q Consensus 382 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 460 (740)
.++...+.+..... .+...+.++.|++.+|.++ .++....... +|+.|++++|.+. ..+..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCch-hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 45555555432221 2333455666666666666 3444444442 6666666666665 33334555666666666666
Q ss_pred cCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhh
Q 038858 461 NISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERR 540 (740)
Q Consensus 461 ~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 540 (740)
++. .+|......+.|+.|++++|.+. .+|........|+++.+++|++. ..+..+..
T Consensus 174 ~l~--------------~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~------- 230 (394)
T COG4886 174 DLS--------------DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSN------- 230 (394)
T ss_pred hhh--------------hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhh-------
Confidence 655 33333334555555666665555 33333333334555555555321 11111111
Q ss_pred hccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCcc
Q 038858 541 VLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGK 606 (740)
Q Consensus 541 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 606 (740)
+..+..+.+.+|++.. .+..+..+++++.|++++|.++.... +..+.+++.|++++|.++..
T Consensus 231 -~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 231 -LKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred -cccccccccCCceeee-ccchhccccccceecccccccccccc--ccccCccCEEeccCcccccc
Confidence 3344444444444432 13344444445555555554443222 44444455555555544433
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.09 E-value=1.7e-11 Score=118.04 Aligned_cols=192 Identities=23% Similarity=0.271 Sum_probs=95.1
Q ss_pred CCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCccccccC-------------ccccCCCCCCEEEccCCcCc
Q 038858 108 MPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLP-------------WCLANMTSLRTLDVSSNQLT 174 (740)
Q Consensus 108 l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~-------------~~l~~l~~L~~L~L~~n~l~ 174 (740)
+++|++||||+|.++.+...-..+-++++..|++|.|.+|.+.-.-. ...++-+.|+++..++|++.
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 66777777777766632222222235566677777777776542111 11223345555555555443
Q ss_pred cccCCCchhhcccccccchhcccccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCch---Hh
Q 038858 175 GSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPN---WL 251 (740)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~~ 251 (740)
+... ..+...+...+.|+.+.+.+|.+....-. .-
T Consensus 171 n~ga------------------------------------------~~~A~~~~~~~~leevr~~qN~I~~eG~~al~ea 208 (382)
T KOG1909|consen 171 NGGA------------------------------------------TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEA 208 (382)
T ss_pred cccH------------------------------------------HHHHHHHHhccccceEEEecccccCchhHHHHHH
Confidence 1100 01223444556666666666665422211 11
Q ss_pred hhcCCCCCEEeccCCcccCC----CCCCCCCCCCcCEEeccCCcCcccCChhH----hhcCCCCcEEEccCCcCccc---
Q 038858 252 LENNTKLESLSLVNDSLAGP----FRLPIHSHKSLRLLDVSNNNFQGRIPAEI----GDILPSLSSFNISMNALDGS--- 320 (740)
Q Consensus 252 ~~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~----~~~~~~L~~L~l~~n~~~~~--- 320 (740)
+..+++|++|++.+|.++.. ....+..+++|++|++++|.+.......+ ....|+|++|.+.+|.|+..
T Consensus 209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~ 288 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL 288 (382)
T ss_pred HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH
Confidence 24566666666666655432 12234455666666666666554333222 22345666666666665521
Q ss_pred -CCccccCCCCCcEEEeecccC
Q 038858 321 -IPSSFGNMNFLQILDLSNNHL 341 (740)
Q Consensus 321 -~~~~~~~l~~L~~L~L~~n~l 341 (740)
+.......+.|+.|++++|.+
T Consensus 289 ~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 289 ALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHhcchhhHHhcCCcccc
Confidence 112233345555555555555
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.09 E-value=5.7e-12 Score=121.20 Aligned_cols=93 Identities=17% Similarity=0.198 Sum_probs=44.9
Q ss_pred CCCCCCEEecCCCccccCccchHHH---hccCCCCcEEEccCcccccCCCCC---------CccccCCCCCCCEEEccCC
Q 038858 80 HFKSLEYLDMNTACIALNASFLQII---GASMPFLKYLSLSYFTFGTNSSRI---------LDQGLCPLVHLQELHMANN 147 (740)
Q Consensus 80 ~l~~L~~L~L~~~~i~~~~~~~~~l---~~~l~~L~~L~Ls~~~~~~~~~~~---------~~~~l~~l~~L~~L~L~~n 147 (740)
.+++|++||||.| .+....++.+ -+++..|+.|.|.+|.++...+.. .......-+.|+++....|
T Consensus 90 ~~~~L~~ldLSDN--A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 90 GCPKLQKLDLSDN--AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred cCCceeEeecccc--ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 3445555555555 3333322221 122555555555555554222222 1112333456667766666
Q ss_pred ccccc----cCccccCCCCCCEEEccCCcCc
Q 038858 148 DLRGS----LPWCLANMTSLRTLDVSSNQLT 174 (740)
Q Consensus 148 ~i~~~----~~~~l~~l~~L~~L~L~~n~l~ 174 (740)
++... +...|...+.|+.+.+.+|.|.
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~ 198 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIR 198 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEeccccc
Confidence 66432 2234555566677766666654
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.09 E-value=3e-11 Score=113.36 Aligned_cols=201 Identities=25% Similarity=0.246 Sum_probs=128.7
Q ss_pred CCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccC-CcccCCCCccccCCCCccE
Q 038858 376 NLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPE-NHLEGPIPVAFCQLDSLQI 454 (740)
Q Consensus 376 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~ 454 (740)
.+.+|+.+.++.|.-..+..- ...-+.|+++.+.+..+.. .| .+-....+.....+. .-..|.....+..++.|++
T Consensus 212 ~f~~l~~~~~s~~~~~~i~~~-~~~kptl~t~~v~~s~~~~-~~-~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lte 288 (490)
T KOG1259|consen 212 AFRNLKTLKFSALSTENIVDI-ELLKPTLQTICVHNTTIQD-VP-SLLPETILADPSGSEPSTSNGSALVSADTWQELTE 288 (490)
T ss_pred Hhhhhheeeeeccchhheece-eecCchhheeeeecccccc-cc-cccchhhhcCccCCCCCccCCceEEecchHhhhhh
Confidence 345666666666643322211 1223566677666654432 11 111112222111111 1112223334455678888
Q ss_pred EeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCccccc
Q 038858 455 LGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNT 534 (740)
Q Consensus 455 L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 534 (740)
+|+++|.|+ .+.+...-.+.++.|++++|.+.... .+..+++|+.||||+|.++.... +
T Consensus 289 lDLS~N~I~--------------~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~~G-w---- 347 (490)
T KOG1259|consen 289 LDLSGNLIT--------------QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAECVG-W---- 347 (490)
T ss_pred ccccccchh--------------hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhhhh-h----
Confidence 999998887 55666777788999999999887433 37788899999999998764321 1
Q ss_pred ccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCcc-chhccCcCCCcEEECCCCcCCcc
Q 038858 535 ALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTI-LSTFTNLRHIESLDLYHNKLNGK 606 (740)
Q Consensus 535 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~ 606 (740)
...+.+++.|.|++|.+... ..+..+-+|..||+++|+|.... ...++++|.|+.+.|.+|++.+.
T Consensus 348 ----h~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 348 ----HLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred ----HhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 12256889999999988643 35667788999999999998643 36789999999999999999843
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.09 E-value=1.1e-10 Score=105.82 Aligned_cols=142 Identities=21% Similarity=0.327 Sum_probs=52.9
Q ss_pred CCCCCCCCCCCCCccccCCCCCCcEEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCCCCEEecCC
Q 038858 12 LMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNT 91 (740)
Q Consensus 12 Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~ 91 (740)
|..+.|... ..+.+..++++|+|++|.+... +.+...+.+|+.|++++|.++.. . .+..+++|++|++++
T Consensus 4 lt~~~i~~~-----~~~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l-~--~l~~L~~L~~L~L~~ 73 (175)
T PF14580_consen 4 LTANMIEQI-----AQYNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL-E--GLPGLPRLKTLDLSN 73 (175)
T ss_dssp ---------------------------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--S
T ss_pred ccccccccc-----cccccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc-c--CccChhhhhhcccCC
Confidence 344444444 4567778899999999998764 44553378999999999999843 2 488899999999999
Q ss_pred CccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCcccccc---CccccCCCCCCEEEc
Q 038858 92 ACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSL---PWCLANMTSLRTLDV 168 (740)
Q Consensus 92 ~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~---~~~l~~l~~L~~L~L 168 (740)
|+|. .+...+...+++|++|++++|++.+ ...+ ..++.+++|++|++.+|.+.... ...+..+|+|+.||-
T Consensus 74 N~I~---~i~~~l~~~lp~L~~L~L~~N~I~~-l~~l--~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 74 NRIS---SISEGLDKNLPNLQELYLSNNKISD-LNEL--EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp S------S-CHHHHHH-TT--EEE-TTS---S-CCCC--GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCCC---ccccchHHhCCcCCEEECcCCcCCC-hHHh--HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 9663 2333343339999999999999972 2222 36788999999999999987432 134678999999985
Q ss_pred c
Q 038858 169 S 169 (740)
Q Consensus 169 ~ 169 (740)
.
T Consensus 148 ~ 148 (175)
T PF14580_consen 148 Q 148 (175)
T ss_dssp E
T ss_pred E
Confidence 4
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=2.2e-11 Score=120.49 Aligned_cols=186 Identities=23% Similarity=0.271 Sum_probs=113.1
Q ss_pred CCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCccccc--cCccccCCCCCCEEEccCCcCccccCCCchhhc
Q 038858 108 MPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGS--LPWCLANMTSLRTLDVSSNQLTGSISSSPLILD 185 (740)
Q Consensus 108 l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 185 (740)
+.+|+...|.++.+.. .-.......|++++.|||+.|-+..- +......+|+|+.|+++.|.+......
T Consensus 120 ~kkL~~IsLdn~~V~~---~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s------ 190 (505)
T KOG3207|consen 120 LKKLREISLDNYRVED---AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS------ 190 (505)
T ss_pred HHhhhheeecCccccc---cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc------
Confidence 6677888887776651 11112566788888888888876532 122345688888888888887522111
Q ss_pred ccccccchhcccccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCchHhhhcCCCCCEEeccC
Q 038858 186 AYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVN 265 (740)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 265 (740)
.... .++.|+.|.++.|.++-.--.++...+|+|+.|.+..
T Consensus 191 ----------------------~~~~-----------------~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~ 231 (505)
T KOG3207|consen 191 ----------------------NTTL-----------------LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEA 231 (505)
T ss_pred ----------------------cchh-----------------hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhc
Confidence 1111 3457888888888887555555566778888888888
Q ss_pred CcccCCCCCCCCCCCCcCEEeccCCcCcccCCh-hHhhcCCCCcEEEccCCcCcccC-Ccc-----ccCCCCCcEEEeec
Q 038858 266 DSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPA-EIGDILPSLSSFNISMNALDGSI-PSS-----FGNMNFLQILDLSN 338 (740)
Q Consensus 266 ~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~-~~~-----~~~l~~L~~L~L~~ 338 (740)
|............+..|++|||++|.+. ..+. .....+|.|+.|+++.+.+.+.. |+. ...+++|+.|++..
T Consensus 232 N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~ 310 (505)
T KOG3207|consen 232 NEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE 310 (505)
T ss_pred ccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeeccc
Confidence 7533333334445677788888887766 3331 12223677777777777766422 221 23445566666666
Q ss_pred ccCC
Q 038858 339 NHLT 342 (740)
Q Consensus 339 n~l~ 342 (740)
|++.
T Consensus 311 N~I~ 314 (505)
T KOG3207|consen 311 NNIR 314 (505)
T ss_pred Cccc
Confidence 6554
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.05 E-value=2.6e-10 Score=121.70 Aligned_cols=135 Identities=34% Similarity=0.495 Sum_probs=57.0
Q ss_pred hhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCc
Q 038858 482 RIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPP 561 (740)
Q Consensus 482 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 561 (740)
.+..+++|+.|++++|++. ..+...+..+.|+.|++++|++....+.. .. +..|+++.+++|.+. ..+.
T Consensus 158 ~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~-~~--------~~~L~~l~~~~N~~~-~~~~ 226 (394)
T COG4886 158 PLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEI-EL--------LSALEELDLSNNSII-ELLS 226 (394)
T ss_pred hhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccccCchhh-hh--------hhhhhhhhhcCCcce-ecch
Confidence 3444444555555555444 22222223444445555555444222210 00 123444445444322 2233
Q ss_pred CccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCccccc
Q 038858 562 QIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGK 630 (740)
Q Consensus 562 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 630 (740)
.+..+..+..+.+.+|++.. .+..+..+++++.|++++|.++...+ +..+.+++.|++++|.++..
T Consensus 227 ~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 227 SLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred hhhhcccccccccCCceeee-ccchhccccccceecccccccccccc--ccccCccCEEeccCcccccc
Confidence 34444444444444444442 13344444445555555554442222 44444455555555444433
No 35
>PLN03150 hypothetical protein; Provisional
Probab=98.96 E-value=1.4e-09 Score=121.32 Aligned_cols=113 Identities=32% Similarity=0.513 Sum_probs=97.6
Q ss_pred cccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcC
Q 038858 512 QLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLR 591 (740)
Q Consensus 512 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 591 (740)
.++.|+|++|.+.+.+|..+.. +++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|..+.+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~--------L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~ 490 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISK--------LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490 (623)
T ss_pred EEEEEECCCCCccccCCHHHhC--------CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCC
Confidence 4678888888888888877766 67889999999999888998899999999999999999999999999999
Q ss_pred CCcEEECCCCcCCccCchhhhcC-CCCCEEEccCCcccccCC
Q 038858 592 HIESLDLYHNKLNGKIPCQLVEL-NALVVFSVAYNNLSGKIP 632 (740)
Q Consensus 592 ~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~ 632 (740)
+|+.|+|++|++++.+|..+... .++..+++++|+..+..|
T Consensus 491 ~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 491 SLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99999999999999999988764 467889999997665444
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.93 E-value=2.1e-09 Score=97.58 Aligned_cols=130 Identities=22% Similarity=0.297 Sum_probs=53.4
Q ss_pred CCCCCCEEeCCCCCCCCCCCCCccccC-CCCCCcEEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCC-CC
Q 038858 3 SFSSLNTLCLMDNNLTEIVTTTTQELH-NFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGF-PH 80 (740)
Q Consensus 3 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~l~~L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l-~~ 80 (740)
+...+++|+|.+|.|+.+ +.++ .+.+|+.|++++|.+... +.+.. +++|+.|++++|++++. .. .+ ..
T Consensus 17 n~~~~~~L~L~~n~I~~I-----e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~-L~~L~~L~L~~N~I~~i-~~-~l~~~ 86 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI-----ENLGATLDKLEVLDLSNNQITKL--EGLPG-LPRLKTLDLSNNRISSI-SE-GLDKN 86 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS---S--CH-HHHHH
T ss_pred cccccccccccccccccc-----cchhhhhcCCCEEECCCCCCccc--cCccC-hhhhhhcccCCCCCCcc-cc-chHHh
Confidence 455689999999999998 6677 589999999999998864 46666 89999999999999843 22 23 36
Q ss_pred CCCCCEEecCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEcc
Q 038858 81 FKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMA 145 (740)
Q Consensus 81 l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~ 145 (740)
+++|++|++++|+|.--.+ ...+.. +++|++|++.+|++......-.. .+..+|+|+.||-.
T Consensus 87 lp~L~~L~L~~N~I~~l~~-l~~L~~-l~~L~~L~L~~NPv~~~~~YR~~-vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNE-LEPLSS-LPKLRVLSLEGNPVCEKKNYRLF-VIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TT--EEE-TTS---SCCC-CGGGGG--TT--EEE-TT-GGGGSTTHHHH-HHHH-TT-SEETTE
T ss_pred CCcCCEEECcCCcCCChHH-hHHHHc-CCCcceeeccCCcccchhhHHHH-HHHHcChhheeCCE
Confidence 8999999999997754333 356666 99999999999998732211111 46789999999854
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.92 E-value=1e-10 Score=124.83 Aligned_cols=267 Identities=26% Similarity=0.250 Sum_probs=166.0
Q ss_pred CCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEE
Q 038858 329 NFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLH 408 (740)
Q Consensus 329 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 408 (740)
+.++.++...+.+. ..... ...+..++.+.+..|.+.. ....+..+++|+.|++.+|.+..... .+..+++|++|+
T Consensus 49 ~~~~~~~~~~~~~~-~~~~~-~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ 124 (414)
T KOG0531|consen 49 SDLEEIDLIFNLDG-SDEDL-VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLD 124 (414)
T ss_pred chhhhhcchhcccc-chhhh-HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchhee
Confidence 34455555555443 22111 1246677777788887765 22335567888888888888865532 156778888888
Q ss_pred ccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchh-hhccc
Q 038858 409 LNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDR-IDGLL 487 (740)
Q Consensus 409 l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~-~~~l~ 487 (740)
+++|.|+.. ..+..++.|+.|++++|.++.. ..+..++.|+.+++++|++.. +... ...+.
T Consensus 125 ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~--------------ie~~~~~~~~ 186 (414)
T KOG0531|consen 125 LSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVD--------------IENDELSELI 186 (414)
T ss_pred ccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhh--------------hhhhhhhhcc
Confidence 888888643 2355667788888888888744 345557788888888887762 1111 35667
Q ss_pred cCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhcc--ccceEEccCccccccCCcCccC
Q 038858 488 RLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLS--LLSGIDLSCNKLIGDIPPQIGN 565 (740)
Q Consensus 488 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~ 565 (740)
+++.+.+.+|.+... ..+..+..+..+++.+|.++...+... +. .|+.+++++|++. ..+..+..
T Consensus 187 ~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l~~----------~~~~~L~~l~l~~n~i~-~~~~~~~~ 253 (414)
T KOG0531|consen 187 SLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEGLNE----------LVMLHLRELYLSGNRIS-RSPEGLEN 253 (414)
T ss_pred chHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccCccc----------chhHHHHHHhcccCccc-cccccccc
Confidence 777888888877522 233334455555777777664332111 11 2777888888776 33345666
Q ss_pred CCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCcc---Cchh-hhcCCCCCEEEccCCcccccCC
Q 038858 566 LTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGK---IPCQ-LVELNALVVFSVAYNNLSGKIP 632 (740)
Q Consensus 566 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~-~~~l~~L~~L~l~~N~l~~~~~ 632 (740)
+..+..|++.+|++.. ...+...+.+..+....|++... .... ....+.++...+.+|+.....+
T Consensus 254 ~~~l~~l~~~~n~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 254 LKNLPVLDLSSNRISN--LEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred cccccccchhhccccc--cccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 7777788888777764 34455666677777777776521 1111 3455677777777777766544
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.87 E-value=3.6e-10 Score=120.59 Aligned_cols=267 Identities=24% Similarity=0.209 Sum_probs=168.5
Q ss_pred CCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEE
Q 038858 305 PSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLL 384 (740)
Q Consensus 305 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 384 (740)
+..+.++...+.+....-. ...+..++.+.+..|.+. .+...+ ..+.+|+.+++.+|.|..+.. .+..+++|++|+
T Consensus 49 ~~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~-~~~~~l-~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ 124 (414)
T KOG0531|consen 49 SDLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIA-KILNHL-SKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLD 124 (414)
T ss_pred chhhhhcchhccccchhhh-HHHhHhHHhhccchhhhh-hhhccc-ccccceeeeeccccchhhccc-chhhhhcchhee
Confidence 3455555555543321111 145566677777777776 322222 257788888888888876432 155688888888
Q ss_pred ccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCC-ccccCCCCccEEeccCCcCC
Q 038858 385 LEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIP-VAFCQLDSLQILGISDNNIS 463 (740)
Q Consensus 385 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~ 463 (740)
+++|.|.... .+..++.|+.|++++|.+... ..+..++.|+.+++++|.+....+ . ...+.+++.+++.+|.+.
T Consensus 125 ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 125 LSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred cccccccccc--chhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 8888887663 356677788888888888632 345567888888888888875533 2 466778888888888775
Q ss_pred CCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCC--cccEEeCCCccccCCCCCcccccccchhhh
Q 038858 464 GSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLN--QLQLLDLSDNKLHGLIPPCFDNTALHERRV 541 (740)
Q Consensus 464 ~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 541 (740)
...++..+..+..+++..|.++...+ +..+. .|+.+++++|++.... .. +..
T Consensus 200 ---------------~i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~-~~--------~~~ 253 (414)
T KOG0531|consen 200 ---------------EIEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSP-EG--------LEN 253 (414)
T ss_pred ---------------cccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcccccc-cc--------ccc
Confidence 22334445555556777777763322 12222 3788888888876331 11 222
Q ss_pred ccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCc---cch-hccCcCCCcEEECCCCcCCccCc
Q 038858 542 LSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGT---ILS-TFTNLRHIESLDLYHNKLNGKIP 608 (740)
Q Consensus 542 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~-~~~~l~~L~~L~Ls~N~l~~~~~ 608 (740)
+..+..+++.+|++... ..+...+.+..+..+.|.+... ... .....+.++...+.+|++....+
T Consensus 254 ~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 254 LKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred cccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 56788888888887643 2345556677777777776521 111 14556778888888888775544
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.86 E-value=1.7e-09 Score=80.40 Aligned_cols=59 Identities=42% Similarity=0.558 Sum_probs=32.4
Q ss_pred ccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCc
Q 038858 544 LLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNK 602 (740)
Q Consensus 544 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 602 (740)
+|+.|++++|++....+..|..+++|++|++++|+++...+++|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555554444555555555555555555555555555555555555555554
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.85 E-value=1.4e-09 Score=80.82 Aligned_cols=61 Identities=34% Similarity=0.512 Sum_probs=55.6
Q ss_pred CcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcc
Q 038858 567 TRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNL 627 (740)
Q Consensus 567 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 627 (740)
++|++|++++|+++...+..|.++++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999988888999999999999999999988888999999999999999975
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.72 E-value=1.3e-08 Score=116.06 Aligned_cols=39 Identities=26% Similarity=0.346 Sum_probs=19.0
Q ss_pred CCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCC
Q 038858 566 LTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLN 604 (740)
Q Consensus 566 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 604 (740)
.++|+.|.+..+.....+......+..++.+-+..+.+.
T Consensus 769 ~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 769 APHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE 807 (889)
T ss_pred cCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence 355555555555554444444444444444444444443
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=7.5e-10 Score=104.19 Aligned_cols=183 Identities=19% Similarity=0.147 Sum_probs=100.9
Q ss_pred CCCEEEcCCCCCCCcCCCCCCCCCCCCCEEecCCCccccCccchHHHhccCCCCcEEEccCccc-ccCCCCCCccccCCC
Q 038858 58 SLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTF-GTNSSRILDQGLCPL 136 (740)
Q Consensus 58 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~-~~~~~~~~~~~l~~l 136 (740)
.|++|||++..++.......++++++|+.|.++++ .+.+.+...+++ -..|+.|+++.|.- +.+...+ -++++
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~--~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~l---l~~sc 259 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL--RLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQL---LLSSC 259 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhcccccc--ccCcHHHHHHhc-cccceeeccccccccchhHHHH---HHHhh
Confidence 46666666665542211223456666666666666 455666666666 66666666666532 1000000 24566
Q ss_pred CCCCEEEccCCccccccCc-cccC-CCCCCEEEccCCcCccccCCCchhhcccccccchhcccccCCCCCCccccEEEcc
Q 038858 137 VHLQELHMANNDLRGSLPW-CLAN-MTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLS 214 (740)
Q Consensus 137 ~~L~~L~L~~n~i~~~~~~-~l~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 214 (740)
+.|..|++++|........ .+.. -++|+.|+++++.-. +.. .........+++|.+|+++
T Consensus 260 s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn--l~~----------------sh~~tL~~rcp~l~~LDLS 321 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN--LQK----------------SHLSTLVRRCPNLVHLDLS 321 (419)
T ss_pred hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh--hhh----------------hHHHHHHHhCCceeeeccc
Confidence 6677777777665432211 1111 245666666665321 000 0001122445577777777
Q ss_pred CCCCCCCCCchhhcCCCCCCEEEccCCCCcccCchHh--hhcCCCCCEEeccCC
Q 038858 215 SGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWL--LENNTKLESLSLVND 266 (740)
Q Consensus 215 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~--~~~l~~L~~L~l~~~ 266 (740)
.+..+.......+.+++.|+.|.++.|.. ..|..+ +...|.|.+|++.++
T Consensus 322 D~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 322 DSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred cccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 66666666667777788888888888763 334432 245677888877765
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.66 E-value=3.3e-08 Score=112.80 Aligned_cols=202 Identities=23% Similarity=0.264 Sum_probs=120.5
Q ss_pred cCCCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCc--CcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCC
Q 038858 254 NNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNN--FQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFL 331 (740)
Q Consensus 254 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~--l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L 331 (740)
.....+...+-++.+..... -..+++|++|-+.+|. +. .++..++..+|.|++||+++|.--+.+|..++.+-+|
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~--~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAG--SSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred chhheeEEEEeccchhhccC--CCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 34556666666666543222 1234578888888875 44 6777777778888888888877666788888888888
Q ss_pred cEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCccc--ccCccccccCCCCCeEEc
Q 038858 332 QILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFV--EEIPQSLSKCLSLEGLHL 409 (740)
Q Consensus 332 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~l 409 (740)
++|+++++.+. .+|..+. .+..|.+|++..+......+.....+++|++|.+...... ...-..+..+..|+.+..
T Consensus 598 ryL~L~~t~I~-~LP~~l~-~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 598 RYLDLSDTGIS-HLPSGLG-NLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hcccccCCCcc-ccchHHH-HHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 88888888887 7887775 6788888888877654444455555788888877655411 111122344444555444
Q ss_pred cCCcCcccCCCCCCCccCcc----eeeccCCcccCCCCccccCCCCccEEeccCCcCC
Q 038858 410 NNNNLSGKIPQWLGNLTGLQ----YIIIPENHLEGPIPVAFCQLDSLQILGISDNNIS 463 (740)
Q Consensus 410 ~~n~i~~~~~~~l~~l~~L~----~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 463 (740)
..... .+...+...+.|. .+.+.++... ..+..+..+.+|+.|.+.++.+.
T Consensus 676 ~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 676 TISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred ecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCc
Confidence 33322 0011112222222 2222222222 33345566677777777776664
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2.7e-09 Score=100.53 Aligned_cols=229 Identities=21% Similarity=0.169 Sum_probs=148.8
Q ss_pred cEEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCC-CCCCEEecCCCccccCccchHHHhccCCCCcE
Q 038858 35 EYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHF-KSLEYLDMNTACIALNASFLQIIGASMPFLKY 113 (740)
Q Consensus 35 ~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l-~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~ 113 (740)
+.+|+.+-.+.......+.. +....+.+.+..+....-.+.+.-+ +.|++|||++.. ++......+-..|.+|+.
T Consensus 139 ~~lDl~~r~i~p~~l~~l~~--rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~--it~stl~~iLs~C~kLk~ 214 (419)
T KOG2120|consen 139 QTLDLTGRNIHPDVLGRLLS--RGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSV--ITVSTLHGILSQCSKLKN 214 (419)
T ss_pred eeeccCCCccChhHHHHHHh--CCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhh--eeHHHHHHHHHHHHhhhh
Confidence 56777776666554444443 4566777765544322111112222 469999999984 445555555555999999
Q ss_pred EEccCcccccCCCCCCccccCCCCCCCEEEccCCccccc--cCccccCCCCCCEEEccCCcCccccCCCchhhccccccc
Q 038858 114 LSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGS--LPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEI 191 (740)
Q Consensus 114 L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 191 (740)
|.+.++++. ..+.. .+..-.+|+.|+++++.--+. ....+.+++.|+.|++++|.+........
T Consensus 215 lSlEg~~Ld---D~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~---------- 280 (419)
T KOG2120|consen 215 LSLEGLRLD---DPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVA---------- 280 (419)
T ss_pred ccccccccC---cHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHH----------
Confidence 999999887 44444 778889999999999864322 22346789999999999998764332110
Q ss_pred chhcccccCCCCCCccccEEEccCCCCCC--CCCchhhcCCCCCCEEEccCCCC-cccCchHhhhcCCCCCEEeccCCcc
Q 038858 192 NAEITESHSLTAPNFQLKSLSLSSGYEDG--VTFPKFLHHQNKLEDVDLSHIKM-NGEFPNWLLENNTKLESLSLVNDSL 268 (740)
Q Consensus 192 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 268 (740)
...-.++|+.|++++.-..- ..+......+++|..||+++|.. +...... +-+++.|++|.++.|..
T Consensus 281 ---------V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~-~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 281 ---------VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFKFNYLQHLSLSRCYD 350 (419)
T ss_pred ---------HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH-HHhcchheeeehhhhcC
Confidence 00112278888885432211 22333445789999999999764 3333333 46889999999999853
Q ss_pred c-CCCCCCCCCCCCcCEEeccCCc
Q 038858 269 A-GPFRLPIHSHKSLRLLDVSNNN 291 (740)
Q Consensus 269 ~-~~~~~~l~~~~~L~~L~l~~n~ 291 (740)
- ......+...|+|.+|++.++-
T Consensus 351 i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 351 IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred CChHHeeeeccCcceEEEEecccc
Confidence 2 2223356788999999998863
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.56 E-value=1.9e-09 Score=113.32 Aligned_cols=125 Identities=33% Similarity=0.367 Sum_probs=64.5
Q ss_pred cCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCc-CccCC
Q 038858 488 RLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPP-QIGNL 566 (740)
Q Consensus 488 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l 566 (740)
.|.+.+.+.|.+. .....+.-++.++.|+|++|++... ..++.++.|+.|||++|.+. .+|. ...++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v----------~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc 232 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV----------DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC 232 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh----------HHHHhcccccccccccchhc-cccccchhhh
Confidence 4555666666665 4444555566666666666665422 23444556666666666665 2221 22233
Q ss_pred CcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCc-hhhhcCCCCCEEEccCCcc
Q 038858 567 TRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIP-CQLVELNALVVFSVAYNNL 627 (740)
Q Consensus 567 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~l 627 (740)
. |+.|+|++|.++. ..++.++.+|+.||+++|-|.+.-. .-+..+..|+.|+|.+|++
T Consensus 233 ~-L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 233 K-LQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred h-heeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 3 6666666666554 4455556666666666665542211 1123334444444444444
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.54 E-value=1.3e-09 Score=114.41 Aligned_cols=179 Identities=29% Similarity=0.263 Sum_probs=121.2
Q ss_pred ccccccCCCCCeEEccCCcCcccCCCCCCCc-cCcceeeccCCccc----------CCCCccccCCCCccEEeccCCcCC
Q 038858 395 PQSLSKCLSLEGLHLNNNNLSGKIPQWLGNL-TGLQYIIIPENHLE----------GPIPVAFCQLDSLQILGISDNNIS 463 (740)
Q Consensus 395 ~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l-~~L~~L~l~~n~~~----------~~~~~~~~~~~~L~~L~l~~n~l~ 463 (740)
|-.+..+.+|++|.+.+|.+.. ...+..+ ..|++|.-. |.+. +.+..++ .+..|...+.++|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH
Confidence 4456677788888888888753 2222222 234444322 2111 1111111 1345667777777776
Q ss_pred CCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhcc
Q 038858 464 GSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLS 543 (740)
Q Consensus 464 ~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~ 543 (740)
.....+.-++.|+.|+|+.|+++... .+..++.|++|||+.|.+....--...+ -
T Consensus 178 --------------~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~g---------c 232 (1096)
T KOG1859|consen 178 --------------LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVG---------C 232 (1096)
T ss_pred --------------hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhh---------h
Confidence 56677888899999999999998544 7889999999999999987433211111 2
Q ss_pred ccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCcc-chhccCcCCCcEEECCCCcCC
Q 038858 544 LLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTI-LSTFTNLRHIESLDLYHNKLN 604 (740)
Q Consensus 544 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~ 604 (740)
.|+.|.+++|.++.. ..+.++.+|+.||+++|-+.+.. ...+..+..|+.|+|.+|++-
T Consensus 233 ~L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 233 KLQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hheeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 489999999999854 35678899999999999887522 234556788899999999985
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.54 E-value=3e-09 Score=105.05 Aligned_cols=307 Identities=18% Similarity=0.119 Sum_probs=174.6
Q ss_pred CCCcEEECCCCC-CcccchHHHHhcCCCCCEEEcCCCCCCCcCCC-CCCCCCCCCCEEecCCCccccCccchHHHhccCC
Q 038858 32 TNLEYLTLDFSS-LHISLLQSIASIFPSLKSLSMIDCKVNGVVRS-QGFPHFKSLEYLDMNTACIALNASFLQIIGASMP 109 (740)
Q Consensus 32 ~~L~~L~Ls~~~-~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~ 109 (740)
..|+.|.+.++. +.+.....+...++++++|++.+|........ ..-..+++|++|++..|. .+++...+.++++|+
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~-~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS-SITDVSLKYLAEGCR 216 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc-hhHHHHHHHHHHhhh
Confidence 357777777774 33333444544577788887777763322111 111356778888887753 445566666777788
Q ss_pred CCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCccccc--cCccccCCCCCCEEEccCCc-CccccCCCchhhcc
Q 038858 110 FLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGS--LPWCLANMTSLRTLDVSSNQ-LTGSISSSPLILDA 186 (740)
Q Consensus 110 ~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~--~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~ 186 (740)
+|++|+++.|.-....+ +.. ...++..++.+.+.+|.-.+. +...=+.+..+..+++..|. +++.-
T Consensus 217 kL~~lNlSwc~qi~~~g-v~~-~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~--------- 285 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNG-VQA-LQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDED--------- 285 (483)
T ss_pred hHHHhhhccCchhhcCc-chH-HhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchH---------
Confidence 88888888775331111 111 345666677776666532211 00111233445556655553 22110
Q ss_pred cccccchhcccccCCCCCCccccEEEccCCCCCCCCCchhh-cCCCCCCEEEccCCC-CcccCchHhhhcCCCCCEEecc
Q 038858 187 YNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFL-HHQNKLEDVDLSHIK-MNGEFPNWLLENNTKLESLSLV 264 (740)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~ 264 (740)
.......+..|+.|..++....++.....+ .+..+|+.+.++.|+ +++.....+..+++.|+.+++.
T Consensus 286 -----------~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e 354 (483)
T KOG4341|consen 286 -----------LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLE 354 (483)
T ss_pred -----------HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccc
Confidence 011112334677777755555444433333 366888999988887 4444445555678889999888
Q ss_pred CCcccCC--CCCCCCCCCCcCEEeccCCcCc-ccCC---hhHhhcCCCCcEEEccCCcCc-ccCCccccCCCCCcEEEee
Q 038858 265 NDSLAGP--FRLPIHSHKSLRLLDVSNNNFQ-GRIP---AEIGDILPSLSSFNISMNALD-GSIPSSFGNMNFLQILDLS 337 (740)
Q Consensus 265 ~~~~~~~--~~~~l~~~~~L~~L~l~~n~l~-~~~~---~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~ 337 (740)
.+..... ....-.+++.|+++.++.+... +..- .........++.+.+++++.+ +..-+.+..+++|+.+++.
T Consensus 355 ~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~ 434 (483)
T KOG4341|consen 355 ECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELI 434 (483)
T ss_pred ccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeee
Confidence 8754321 2223346788999999877532 2100 111123567899999998754 4445567788999999998
Q ss_pred cccCCCccC-hhhhhcCccCcEEEc
Q 038858 338 NNHLTGEIP-EHLAIGCVNLEILVL 361 (740)
Q Consensus 338 ~n~l~~~~~-~~~~~~l~~L~~L~L 361 (740)
+++-...-+ ..+...+|++++..+
T Consensus 435 ~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 435 DCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred chhhhhhhhhHHHHhhCccceehhh
Confidence 886432222 223345666655443
No 48
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.50 E-value=4.4e-09 Score=103.94 Aligned_cols=307 Identities=17% Similarity=0.059 Sum_probs=193.8
Q ss_pred CCCCEEEcCCCCCCCcCCCC-CCCCCCCCCEEecCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCC
Q 038858 57 PSLKSLSMIDCKVNGVVRSQ-GFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCP 135 (740)
Q Consensus 57 ~~L~~L~l~~~~~~~~~~~~-~l~~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~ 135 (740)
..|+.|.+.+++-.+.-+.. ...+++++++|.+.++. .+++.....+++.|++|++|++..|...+ ......-...
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~-~iTd~s~~sla~~C~~l~~l~L~~c~~iT--~~~Lk~la~g 214 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK-KITDSSLLSLARYCRKLRHLNLHSCSSIT--DVSLKYLAEG 214 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcce-eccHHHHHHHHHhcchhhhhhhcccchhH--HHHHHHHHHh
Confidence 36999999999866443322 23578999999999997 67788888888889999999999864321 1111112357
Q ss_pred CCCCCEEEccCCc-cccc-cCccccCCCCCCEEEccCCcCccccCCCchhhcccccccchhcccccCCCCCCccccEEEc
Q 038858 136 LVHLQELHMANND-LRGS-LPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSL 213 (740)
Q Consensus 136 l~~L~~L~L~~n~-i~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 213 (740)
+++|+++++++|. |++. +......+..++.+.+++|.=. +. +.+......+..+.++++
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~---~l----------------e~l~~~~~~~~~i~~lnl 275 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL---EL----------------EALLKAAAYCLEILKLNL 275 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc---cH----------------HHHHHHhccChHhhccch
Confidence 8999999999985 3332 1223445666777777765311 10 000111122234566665
Q ss_pred cCCCCCCCCC-chhhcCCCCCCEEEccCCCCc-ccCchHhhhcCCCCCEEeccCCcc-cCCCCCCC-CCCCCcCEEeccC
Q 038858 214 SSGYEDGVTF-PKFLHHQNKLEDVDLSHIKMN-GEFPNWLLENNTKLESLSLVNDSL-AGPFRLPI-HSHKSLRLLDVSN 289 (740)
Q Consensus 214 ~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~l-~~~~~L~~L~l~~ 289 (740)
.....+++.. ...-..+..|+.++.+++... +.....+..++++|+.|.++.++- ++.....+ .+.+.|+.+++.+
T Consensus 276 ~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~ 355 (483)
T KOG4341|consen 276 QHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEE 355 (483)
T ss_pred hhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccc
Confidence 4555555433 223335688999999987643 333444567789999999999863 33222223 3578999999998
Q ss_pred CcCcccC-ChhHhhcCCCCcEEEccCCcCc-cc----CCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCC
Q 038858 290 NNFQGRI-PAEIGDILPSLSSFNISMNALD-GS----IPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSN 363 (740)
Q Consensus 290 n~l~~~~-~~~~~~~~~~L~~L~l~~n~~~-~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 363 (740)
+...... -......++.|+.+.+++|... +. ....-.++..|..+.+++++...+-.......+++|+.+++..
T Consensus 356 ~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 356 CGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELID 435 (483)
T ss_pred cceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeec
Confidence 7643111 2334456899999999988643 22 1222356788999999999865343334445788999999988
Q ss_pred ccc-cccCCc-CCCCCCCCCeEEc
Q 038858 364 NNL-EGHMFS-KNFNLTKLSWLLL 385 (740)
Q Consensus 364 n~l-~~~~~~-~~~~l~~L~~L~l 385 (740)
++- +..... .-.++|++++.-+
T Consensus 436 ~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 436 CQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred hhhhhhhhhHHHHhhCccceehhh
Confidence 762 222222 2235777766543
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=7e-08 Score=91.17 Aligned_cols=111 Identities=21% Similarity=0.249 Sum_probs=70.3
Q ss_pred CCEEEcCCCCCCCcCCCCCC-CCCCCCCEEecCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCCCC
Q 038858 59 LKSLSMIDCKVNGVVRSQGF-PHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLV 137 (740)
Q Consensus 59 L~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~ 137 (740)
++.|.+.++.+...-....| ...+.++.|||.+|.|. ..+-...+.+++|+|++|+++.|++....+++| ..+.
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iS-dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp----~p~~ 121 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLIS-DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP----LPLK 121 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhc-cHHHHHHHHhcCccceEeeccCCcCCCccccCc----cccc
Confidence 44555556655422111112 24578888888888653 122233444559999999999998874444443 3567
Q ss_pred CCCEEEccCCcccc-ccCccccCCCCCCEEEccCCcCc
Q 038858 138 HLQELHMANNDLRG-SLPWCLANMTSLRTLDVSSNQLT 174 (740)
Q Consensus 138 ~L~~L~L~~n~i~~-~~~~~l~~l~~L~~L~L~~n~l~ 174 (740)
+|++|.|.++.+.- .....+..+|.++.|.++.|.+.
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence 89999998887642 22345667888899988888543
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=2.1e-07 Score=88.08 Aligned_cols=85 Identities=19% Similarity=0.165 Sum_probs=37.5
Q ss_pred CCCCcEEECCCCCCccc-chHHHHhcCCCCCEEEcCCCCCCCcCCCCCC-CCCCCCCEEecCCCccccCccchHHHhccC
Q 038858 31 FTNLEYLTLDFSSLHIS-LLQSIASIFPSLKSLSMIDCKVNGVVRSQGF-PHFKSLEYLDMNTACIALNASFLQIIGASM 108 (740)
Q Consensus 31 l~~L~~L~Ls~~~~~~~-~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~L~~~~i~~~~~~~~~l~~~l 108 (740)
+++++++||.+|.+++= ....+.+++|.|+.|+++.|++...+.. + ..+++|++|-|.+.. +...........+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp~p~~nl~~lVLNgT~--L~w~~~~s~l~~l 145 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LPLPLKNLRVLVLNGTG--LSWTQSTSSLDDL 145 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc--CcccccceEEEEEcCCC--CChhhhhhhhhcc
Confidence 45555555555554431 1122323355555555555555433321 2 234555555555552 2222222222225
Q ss_pred CCCcEEEccCc
Q 038858 109 PFLKYLSLSYF 119 (740)
Q Consensus 109 ~~L~~L~Ls~~ 119 (740)
|.++.|.++.|
T Consensus 146 P~vtelHmS~N 156 (418)
T KOG2982|consen 146 PKVTELHMSDN 156 (418)
T ss_pred hhhhhhhhccc
Confidence 55555555544
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.29 E-value=7.6e-08 Score=89.70 Aligned_cols=64 Identities=20% Similarity=0.144 Sum_probs=34.5
Q ss_pred CCCCcEEEccCCcCccc----CCccccCCCCCcEEEeecccCCCccChhhhh-----cCccCcEEEcCCcccc
Q 038858 304 LPSLSSFNISMNALDGS----IPSSFGNMNFLQILDLSNNHLTGEIPEHLAI-----GCVNLEILVLSNNNLE 367 (740)
Q Consensus 304 ~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----~l~~L~~L~L~~n~l~ 367 (740)
+.+|+.|++.+|-++.. ...++...+.|++|.+.+|-++......++. ..|+|..|...+|.+.
T Consensus 213 ~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 213 SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred hCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 45666666666665521 2233444556777777777666444443332 2345555555555543
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.22 E-value=1.3e-07 Score=88.11 Aligned_cols=88 Identities=15% Similarity=0.161 Sum_probs=42.0
Q ss_pred CCCCCEEeCCCCCCCCCCCCCc-cccCCCCCCcEEECCCCC---Ccccch-------HHHHhcCCCCCEEEcCCCCCCCc
Q 038858 4 FSSLNTLCLMDNNLTEIVTTTT-QELHNFTNLEYLTLDFSS---LHISLL-------QSIASIFPSLKSLSMIDCKVNGV 72 (740)
Q Consensus 4 l~~L~~L~Ls~n~i~~~~~~~~-~~l~~l~~L~~L~Ls~~~---~~~~~~-------~~l~~~l~~L~~L~l~~~~~~~~ 72 (740)
+..++.++||+|.|...-..++ ..+++-++|+..+++.-- ..+..+ +.+.. |++|+..++++|.+...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlk-cp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLK-CPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhc-CCcceeeeccccccCcc
Confidence 3455666666666654311000 235555666666665421 111111 12223 56666666666655433
Q ss_pred CCCC---CCCCCCCCCEEecCCC
Q 038858 73 VRSQ---GFPHFKSLEYLDMNTA 92 (740)
Q Consensus 73 ~~~~---~l~~l~~L~~L~L~~~ 92 (740)
.|+. .+++-+.|++|.+++|
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecC
Confidence 3321 2344556666666666
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.10 E-value=2.2e-07 Score=77.58 Aligned_cols=58 Identities=26% Similarity=0.350 Sum_probs=27.2
Q ss_pred cCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcc
Q 038858 568 RIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNL 627 (740)
Q Consensus 568 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 627 (740)
..+.|+|++|.|+ ..|..+..++.|+.|+++.|++. ..|..+..+.+|-.|+..+|.+
T Consensus 78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCcc
Confidence 4444444444444 23333444455555555555544 3444444444555555544444
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.00 E-value=3.2e-06 Score=94.22 Aligned_cols=138 Identities=25% Similarity=0.272 Sum_probs=67.9
Q ss_pred CCCcEEECCCCC-CcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCCCCEEecCCCccccCccchHHHhccCCC
Q 038858 32 TNLEYLTLDFSS-LHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPF 110 (740)
Q Consensus 32 ~~L~~L~Ls~~~-~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~ 110 (740)
.+|++|+++|.. +...-+..++..+|+|++|.+++-.+...--.....++++|+.||+|++.+. -...+.. +++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~----nl~GIS~-Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS----NLSGISR-LKN 196 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc----CcHHHhc-ccc
Confidence 455666665542 2333344555555666666665544432110112345566666666665331 1244555 666
Q ss_pred CcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCccccc------cCccccCCCCCCEEEccCCcCcccc
Q 038858 111 LKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGS------LPWCLANMTSLRTLDVSSNQLTGSI 177 (740)
Q Consensus 111 L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~------~~~~l~~l~~L~~L~L~~n~l~~~~ 177 (740)
|+.|.+.+-.+.+ .-.-..+.+|++|++||+|....... ..+.-..+|+|+.||.|++.+...+
T Consensus 197 Lq~L~mrnLe~e~---~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 197 LQVLSMRNLEFES---YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HHHHhccCCCCCc---hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 6666665544431 01111345566666666665443211 1122334778888888877666433
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.94 E-value=1.7e-06 Score=96.33 Aligned_cols=138 Identities=22% Similarity=0.280 Sum_probs=70.7
Q ss_pred CCCCCCEEecCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCcccc-ccCcccc
Q 038858 80 HFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRG-SLPWCLA 158 (740)
Q Consensus 80 ~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~-~~~~~l~ 158 (740)
.+|+|+.|.+++- .+..+....++.++|+|..||+|+++++ .+ .+++.+++|++|.+.+-.+.. ..-..+.
T Consensus 146 ~LPsL~sL~i~~~--~~~~~dF~~lc~sFpNL~sLDIS~TnI~----nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF 217 (699)
T KOG3665|consen 146 MLPSLRSLVISGR--QFDNDDFSQLCASFPNLRSLDISGTNIS----NL--SGISRLKNLQVLSMRNLEFESYQDLIDLF 217 (699)
T ss_pred hCcccceEEecCc--eecchhHHHHhhccCccceeecCCCCcc----Cc--HHHhccccHHHHhccCCCCCchhhHHHHh
Confidence 3556666666554 2222223334444666666666665554 22 245556666666555554442 1122344
Q ss_pred CCCCCCEEEccCCcCccccCCCchhhcccccccchhcccccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEc
Q 038858 159 NMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDL 238 (740)
Q Consensus 159 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 238 (740)
++++|+.||+|........ .+.. ...+.-..++.|+.||.
T Consensus 218 ~L~~L~vLDIS~~~~~~~~-----------------------------~ii~-----------qYlec~~~LpeLrfLDc 257 (699)
T KOG3665|consen 218 NLKKLRVLDISRDKNNDDT-----------------------------KIIE-----------QYLECGMVLPELRFLDC 257 (699)
T ss_pred cccCCCeeeccccccccch-----------------------------HHHH-----------HHHHhcccCccccEEec
Confidence 5566666666555432100 0000 01112224678888888
Q ss_pred cCCCCcccCchHhhhcCCCCCEEeccC
Q 038858 239 SHIKMNGEFPNWLLENNTKLESLSLVN 265 (740)
Q Consensus 239 ~~~~~~~~~~~~~~~~l~~L~~L~l~~ 265 (740)
++..+.+.+-+.+...-++|+.+..-+
T Consensus 258 SgTdi~~~~le~ll~sH~~L~~i~~~~ 284 (699)
T KOG3665|consen 258 SGTDINEEILEELLNSHPNLQQIAALD 284 (699)
T ss_pred CCcchhHHHHHHHHHhCccHhhhhhhh
Confidence 888887777666666666666665544
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.94 E-value=4.7e-07 Score=75.63 Aligned_cols=103 Identities=18% Similarity=0.279 Sum_probs=77.4
Q ss_pred cceEEccCccccccCCcC---ccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEE
Q 038858 545 LSGIDLSCNKLIGDIPPQ---IGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFS 621 (740)
Q Consensus 545 L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 621 (740)
+..++|+.|.+. -+++. +.....|+..+|++|.+....+..-...+.++.|++++|.|+ .+|+.++.++.|+.++
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 455677777665 23333 344467888899999999666655566779999999999999 7788899999999999
Q ss_pred ccCCcccccCCCCCccccCCCccccCCCC
Q 038858 622 VAYNNLSGKIPEMTTQFATFNESNYKGNP 650 (740)
Q Consensus 622 l~~N~l~~~~~~~~~~~~~l~~~~~~~Np 650 (740)
++.|++...+ +.+.++.+|..++..+|.
T Consensus 107 l~~N~l~~~p-~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 107 LRFNPLNAEP-RVIAPLIKLDMLDSPENA 134 (177)
T ss_pred cccCccccch-HHHHHHHhHHHhcCCCCc
Confidence 9999999654 444557777666655553
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.83 E-value=7.2e-05 Score=76.75 Aligned_cols=54 Identities=19% Similarity=0.211 Sum_probs=24.0
Q ss_pred CCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCC
Q 038858 377 LTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPEN 436 (740)
Q Consensus 377 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n 436 (740)
+.+++.|++++|.+... | .+ ..+|++|.+++|.-...+|..+ .++|+.|++++|
T Consensus 51 ~~~l~~L~Is~c~L~sL-P-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIESL-P-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCccc-C-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 45555566655544322 2 11 1245555555543222333322 134555555554
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.81 E-value=3.9e-05 Score=69.02 Aligned_cols=106 Identities=25% Similarity=0.268 Sum_probs=61.3
Q ss_pred CCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccC-CcCCCCCCCCCe
Q 038858 304 LPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHM-FSKNFNLTKLSW 382 (740)
Q Consensus 304 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 382 (740)
..+...+++++|.+. ..+.|..++.|..|.+++|.|+ .+...+..-+++|..|.+.+|.+.... ...+..+|+|++
T Consensus 41 ~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchh--hcccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 445666677776665 2233566677777777777776 555555545666777777776654322 123445666666
Q ss_pred EEccCCcccccC---ccccccCCCCCeEEccCC
Q 038858 383 LLLEDNHFVEEI---PQSLSKCLSLEGLHLNNN 412 (740)
Q Consensus 383 L~l~~n~~~~~~---~~~~~~l~~L~~L~l~~n 412 (740)
|.+-+|++...- ...+..+++|++||.++-
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 666666654331 123455666666666554
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.79 E-value=1.9e-05 Score=53.46 Aligned_cols=36 Identities=31% Similarity=0.601 Sum_probs=18.9
Q ss_pred cCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCC
Q 038858 568 RIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLN 604 (740)
Q Consensus 568 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 604 (740)
+|++|++++|+|+. ++..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 45566666666653 3334555566666666665555
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.79 E-value=2.4e-05 Score=52.89 Aligned_cols=36 Identities=31% Similarity=0.547 Sum_probs=20.6
Q ss_pred CCcEEECCCCcCCccCchhhhcCCCCCEEEccCCccc
Q 038858 592 HIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLS 628 (740)
Q Consensus 592 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 628 (740)
+|++|++++|+++ .+|..+..+++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5666666666666 34445566666666666666665
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.68 E-value=0.00011 Score=64.40 Aligned_cols=55 Identities=24% Similarity=0.371 Sum_probs=17.4
Q ss_pred CCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEc
Q 038858 304 LPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVL 361 (740)
Q Consensus 304 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 361 (740)
+++|+.+.+.. .+.......|.+++.|+.+.+.++ +. .++...+.++++++.+.+
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITF 65 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccc
Confidence 33444444432 233333334444444444444332 32 333333333434444444
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.65 E-value=0.00013 Score=64.04 Aligned_cols=106 Identities=21% Similarity=0.286 Sum_probs=41.4
Q ss_pred ccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCC
Q 038858 323 SSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCL 402 (740)
Q Consensus 323 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 402 (740)
.+|.++++|+.+.+.. .+. .++...|.++++|+.+.+..+ +.......|.++++++.+.+.+ .+.......|..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 3455556666666553 343 455555555555665555543 4444444454554555555543 22223333444455
Q ss_pred CCCeEEccCCcCcccCCCCCCCccCcceeecc
Q 038858 403 SLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIP 434 (740)
Q Consensus 403 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~ 434 (740)
+|+.+++..+ +.......|.++ .++.+.+.
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 5555555433 222333344443 44544444
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.62 E-value=7.9e-05 Score=67.12 Aligned_cols=130 Identities=18% Similarity=0.213 Sum_probs=85.3
Q ss_pred CEEeCCCCCCCCCCCCCccccCC-CCCCcEEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCCCCE
Q 038858 8 NTLCLMDNNLTEIVTTTTQELHN-FTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEY 86 (740)
Q Consensus 8 ~~L~Ls~n~i~~~~~~~~~~l~~-l~~L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 86 (740)
+.++|.+.++..+ +.++. ......+||++|++.. .+.+.. +++|..|.+.+|+|+..-| ..-..+++|+.
T Consensus 22 ~e~~LR~lkip~i-----enlg~~~d~~d~iDLtdNdl~~--l~~lp~-l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~ 92 (233)
T KOG1644|consen 22 RELDLRGLKIPVI-----ENLGATLDQFDAIDLTDNDLRK--LDNLPH-LPRLHTLLLNNNRITRIDP-DLDTFLPNLKT 92 (233)
T ss_pred cccccccccccch-----hhccccccccceecccccchhh--cccCCC-ccccceEEecCCcceeecc-chhhhccccce
Confidence 4566666666555 33443 3567788888887653 244555 7788888888888884433 32344677888
Q ss_pred EecCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCcc
Q 038858 87 LDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDL 149 (740)
Q Consensus 87 L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i 149 (740)
|.|.+|.|.--+++ ..+.. ||+|++|.+-+|.+......-.- .+..+++|++||...-..
T Consensus 93 L~LtnNsi~~l~dl-~pLa~-~p~L~~Ltll~Npv~~k~~YR~y-vl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 93 LILTNNSIQELGDL-DPLAS-CPKLEYLTLLGNPVEHKKNYRLY-VLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred EEecCcchhhhhhc-chhcc-CCccceeeecCCchhcccCceeE-EEEecCcceEeehhhhhH
Confidence 88888876433333 33445 88999999988877633322222 477889999999877543
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.58 E-value=0.00015 Score=74.44 Aligned_cols=137 Identities=15% Similarity=0.248 Sum_probs=83.3
Q ss_pred CCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccc-cccc
Q 038858 423 GNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHN-NLEG 501 (740)
Q Consensus 423 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~ 501 (740)
..+.+++.|++++|.++ .+| .-..+|++|.+++|.-.. .+|+.+ .++|+.|++++| .+.
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP---~LP~sLtsL~Lsnc~nLt-------------sLP~~L--P~nLe~L~Ls~Cs~L~- 108 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLP---VLPNELTEITIENCNNLT-------------TLPGSI--PEGLEKLTVCHCPEIS- 108 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccC---CCCCCCcEEEccCCCCcc-------------cCCchh--hhhhhheEccCccccc-
Confidence 34688999999999877 445 234579999998865432 333333 257899999988 444
Q ss_pred cccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCcccc--ccCCcCccCCCcCcEEeCcCCcC
Q 038858 502 EVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLI--GDIPPQIGNLTRIQTLNLSHNNL 579 (740)
Q Consensus 502 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l 579 (740)
..| ++|+.|+++++..... ..+ .++|+.|.+.++.-. ...|..+ .++|++|++++|..
T Consensus 109 sLP------~sLe~L~L~~n~~~~L--~~L----------PssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~ 168 (426)
T PRK15386 109 GLP------ESVRSLEIKGSATDSI--KNV----------PNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSN 168 (426)
T ss_pred ccc------cccceEEeCCCCCccc--ccC----------cchHhheecccccccccccccccc--CCcccEEEecCCCc
Confidence 333 3577788876654321 111 246777777543311 0111111 15788888888876
Q ss_pred CCccchhccCcCCCcEEECCCCc
Q 038858 580 TGTILSTFTNLRHIESLDLYHNK 602 (740)
Q Consensus 580 ~~~~~~~~~~l~~L~~L~Ls~N~ 602 (740)
. ..|..+. .+|+.|+++.|.
T Consensus 169 i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 169 I-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred c-cCccccc--ccCcEEEecccc
Confidence 5 3344444 578888887763
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.51 E-value=6.5e-05 Score=70.78 Aligned_cols=110 Identities=23% Similarity=0.241 Sum_probs=55.1
Q ss_pred CCCCCCcEEECCCCCCcccchHHHHhcCCCCCEEEcCCC--CCCCcCCCCCCCCCCCCCEEecCCCccccCccchHHHhc
Q 038858 29 HNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDC--KVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGA 106 (740)
Q Consensus 29 ~~l~~L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~--~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~l~~ 106 (740)
..+..|+.|++.++.++. ...+.. +++|+.|.++.| ++.+.++.. ...+++|++|++++|+|.+ -+....+.+
T Consensus 40 d~~~~le~ls~~n~gltt--~~~~P~-Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~-lstl~pl~~ 114 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTT--LTNFPK-LPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKD-LSTLRPLKE 114 (260)
T ss_pred ccccchhhhhhhccceee--cccCCC-cchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCcccc-ccccchhhh
Confidence 345555555555554432 123333 566777777766 333333221 3344777777777775543 222334444
Q ss_pred cCCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEcc
Q 038858 107 SMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMA 145 (740)
Q Consensus 107 ~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~ 145 (740)
+.+|..|++.+|..++ -...-...|.-+++|++||-.
T Consensus 115 -l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 115 -LENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred -hcchhhhhcccCCccc-cccHHHHHHHHhhhhcccccc
Confidence 6667777777665541 001111134455666666533
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.16 E-value=0.00014 Score=68.59 Aligned_cols=109 Identities=23% Similarity=0.265 Sum_probs=76.4
Q ss_pred cCCCCCEEEcCCCCCCCcCCCCCCCCCCCCCEEecCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccC
Q 038858 55 IFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLC 134 (740)
Q Consensus 55 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~ 134 (740)
.+..|+.|++.++.++.. ..+..+++|+.|.++.|.......+...... +++|++|+++.|++.. ..++. .+.
T Consensus 41 ~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~-~P~l~~l~ls~Nki~~-lstl~--pl~ 113 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEK-APNLKVLNLSGNKIKD-LSTLR--PLK 113 (260)
T ss_pred cccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhh-CCceeEEeecCCcccc-ccccc--hhh
Confidence 367889999888887643 2488899999999999943333444333444 8999999999998872 22222 366
Q ss_pred CCCCCCEEEccCCcccccc---CccccCCCCCCEEEccC
Q 038858 135 PLVHLQELHMANNDLRGSL---PWCLANMTSLRTLDVSS 170 (740)
Q Consensus 135 ~l~~L~~L~L~~n~i~~~~---~~~l~~l~~L~~L~L~~ 170 (740)
.+.+|..|++.+|...... ...|.-+++|++||-..
T Consensus 114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 7788899999999876421 12456678888886443
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.07 E-value=0.00016 Score=79.74 Aligned_cols=121 Identities=27% Similarity=0.237 Sum_probs=62.6
Q ss_pred hHHHHhcCCCCCEEEcCCCCCCCcCC-CCCCCCCCCCCEEecCCCc--cccCccchHHHhccCCCCcEEEccCcc-cccC
Q 038858 49 LQSIASIFPSLKSLSMIDCKVNGVVR-SQGFPHFKSLEYLDMNTAC--IALNASFLQIIGASMPFLKYLSLSYFT-FGTN 124 (740)
Q Consensus 49 ~~~l~~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~L~~~~--i~~~~~~~~~l~~~l~~L~~L~Ls~~~-~~~~ 124 (740)
...+....+.|+.|.+.++.-..... ......+++|+.|+++++. +.........+...+++|+.|+++++. ++
T Consensus 180 ~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is-- 257 (482)
T KOG1947|consen 180 LLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT-- 257 (482)
T ss_pred HHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC--
Confidence 33343335677777777664332211 1124556777777776521 111121222344447777777777766 33
Q ss_pred CCCCCcccc-CCCCCCCEEEccCCc-ccccc-CccccCCCCCCEEEccCCcC
Q 038858 125 SSRILDQGL-CPLVHLQELHMANND-LRGSL-PWCLANMTSLRTLDVSSNQL 173 (740)
Q Consensus 125 ~~~~~~~~l-~~l~~L~~L~L~~n~-i~~~~-~~~l~~l~~L~~L~L~~n~l 173 (740)
..... .+ ..+++|++|.+.+|. +++.. ......+++|++|+++++..
T Consensus 258 -d~~l~-~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 258 -DIGLS-ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred -chhHH-HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 11111 22 226677777766666 44322 22234567778887777754
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.03 E-value=0.00014 Score=80.16 Aligned_cols=163 Identities=26% Similarity=0.227 Sum_probs=89.9
Q ss_pred CCCCCEEeCCCCC-CCCCCCCCccccCCCCCCcEEECCCC-CC-ccc--chHHHHhcCCCCCEEEcCCCC-CCCcCCCCC
Q 038858 4 FSSLNTLCLMDNN-LTEIVTTTTQELHNFTNLEYLTLDFS-SL-HIS--LLQSIASIFPSLKSLSMIDCK-VNGVVRSQG 77 (740)
Q Consensus 4 l~~L~~L~Ls~n~-i~~~~~~~~~~l~~l~~L~~L~Ls~~-~~-~~~--~~~~l~~~l~~L~~L~l~~~~-~~~~~~~~~ 77 (740)
++.|+.|.+.++. +...- .......+++|+.|+++++ .. ... ....+...+++|+.|+++.+. +++..- ..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l-~~ 263 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDS--LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL-SA 263 (482)
T ss_pred CchhhHhhhcccccCChhh--HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH-HH
Confidence 5677777777663 33320 0134566788888888763 21 111 112233446788888888877 442211 11
Q ss_pred CC-CCCCCCEEecCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCc----cc--
Q 038858 78 FP-HFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANND----LR-- 150 (740)
Q Consensus 78 l~-~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~----i~-- 150 (740)
+. .+++|++|.+.++. .+++.....+...++.|++|+++.|....+. .+.. ...++++|+.|.+.... ++
T Consensus 264 l~~~c~~L~~L~l~~c~-~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~-~l~~-~~~~c~~l~~l~~~~~~~c~~l~~~ 340 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCS-NLTDEGLVSIAERCPSLRELDLSGCHGLTDS-GLEA-LLKNCPNLRELKLLSLNGCPSLTDL 340 (482)
T ss_pred HHhhCCCcceEccCCCC-ccchhHHHHHHHhcCcccEEeeecCccchHH-HHHH-HHHhCcchhhhhhhhcCCCccHHHH
Confidence 22 36788888877663 2566666677777888888888877543111 1111 12334444444433222 11
Q ss_pred -----------cccCccccCCCCCCEEEccCCc
Q 038858 151 -----------GSLPWCLANMTSLRTLDVSSNQ 172 (740)
Q Consensus 151 -----------~~~~~~l~~l~~L~~L~L~~n~ 172 (740)
.........+++++.+.+..+.
T Consensus 341 ~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 341 SLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred HHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 1122235667888888888776
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.44 E-value=0.00011 Score=69.28 Aligned_cols=103 Identities=22% Similarity=0.232 Sum_probs=67.5
Q ss_pred CCCCCcEEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCCCCEEecCCCccccCccchHHHhccCC
Q 038858 30 NFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMP 109 (740)
Q Consensus 30 ~l~~L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~ 109 (740)
.+.+.+.|+..+|.+.++ .++..++.|+.|.|+-|+|+...| +..|++|++|.|..|+|...++ ...+.+ ++
T Consensus 17 dl~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~p---l~rCtrLkElYLRkN~I~sldE-L~YLkn-lp 88 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLAP---LQRCTRLKELYLRKNCIESLDE-LEYLKN-LP 88 (388)
T ss_pred HHHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccchh---HHHHHHHHHHHHHhcccccHHH-HHHHhc-Cc
Confidence 356677788888887754 334447888888888888875443 7788888888888886632221 223444 88
Q ss_pred CCcEEEccCcccccCCCCCCc----cccCCCCCCCEEE
Q 038858 110 FLKYLSLSYFTFGTNSSRILD----QGLCPLVHLQELH 143 (740)
Q Consensus 110 ~L~~L~Ls~~~~~~~~~~~~~----~~l~~l~~L~~L~ 143 (740)
+|+.|=|..|... +.-+. ..+.-|++|+.||
T Consensus 89 sLr~LWL~ENPCc---~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 89 SLRTLWLDENPCC---GEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhhHhhccCCcc---cccchhHHHHHHHHcccchhcc
Confidence 8888888777665 33222 1355677777775
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=0.0002 Score=67.72 Aligned_cols=82 Identities=17% Similarity=0.186 Sum_probs=44.5
Q ss_pred CCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEE
Q 038858 280 KSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEIL 359 (740)
Q Consensus 280 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 359 (740)
.+.++|++.++.+. ...+...+|.|++|.|+-|.|+... .|..|++|++|.|..|.|.+.-.-....++++|+.|
T Consensus 19 ~~vkKLNcwg~~L~---DIsic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLD---DISICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCcc---HHHHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34555666666555 2234444666666666666666322 255666666666666666522222334455566666
Q ss_pred EcCCccc
Q 038858 360 VLSNNNL 366 (740)
Q Consensus 360 ~L~~n~l 366 (740)
.|..|.-
T Consensus 94 WL~ENPC 100 (388)
T KOG2123|consen 94 WLDENPC 100 (388)
T ss_pred hhccCCc
Confidence 6655543
No 71
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=95.52 E-value=0.0066 Score=75.52 Aligned_cols=58 Identities=19% Similarity=0.351 Sum_probs=45.7
Q ss_pred EccCCcccccCCCCCccccCCCccccCCCCCCCCCCCC-------------------CCCCCCcccccCCCCCCCCc
Q 038858 621 SVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPLP-------------------ICRSPVTMLEASTSNEGDDN 678 (740)
Q Consensus 621 ~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~-------------------~c~~~~~~~~~~~~~~~~~~ 678 (740)
||++|+|+.+.+..|..+.+|+.+++++|||.|+|.+. .|..|...+++.+.....++
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~~~~~i~CasP~~LrG~~L~~l~~~d 77 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLLGIPLLD 77 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCccccCCcccCCCCChHHCCCCcccCCccc
Confidence 57888888888888888888999999999999999751 48888887777666554433
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.24 E-value=0.018 Score=32.21 Aligned_cols=12 Identities=50% Similarity=0.639 Sum_probs=5.0
Q ss_pred CcEEECCCCcCC
Q 038858 593 IESLDLYHNKLN 604 (740)
Q Consensus 593 L~~L~Ls~N~l~ 604 (740)
|++||+++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 334444444443
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.16 E-value=0.011 Score=53.66 Aligned_cols=86 Identities=22% Similarity=0.200 Sum_probs=61.4
Q ss_pred CCCcEEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCC-CCCCCCEEecCCCccccCccchHHHhccCCC
Q 038858 32 TNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFP-HFKSLEYLDMNTACIALNASFLQIIGASMPF 110 (740)
Q Consensus 32 ~~L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~ 110 (740)
..++.++-+++.+...-.+.+.+ ++.++.|.+.+|.-.++-..+.++ -.++|+.|++++|. .+++.....+.+ +++
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~-l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~-rIT~~GL~~L~~-lkn 177 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRD-LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP-RITDGGLACLLK-LKN 177 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhc-cchhhhheeccccchhhHHHHHhcccccchheeeccCCC-eechhHHHHHHH-hhh
Confidence 34677888888887777777877 888888888888654332211122 34788888888886 667777777777 888
Q ss_pred CcEEEccCcc
Q 038858 111 LKYLSLSYFT 120 (740)
Q Consensus 111 L~~L~Ls~~~ 120 (740)
|+.|.+.+-.
T Consensus 178 Lr~L~l~~l~ 187 (221)
T KOG3864|consen 178 LRRLHLYDLP 187 (221)
T ss_pred hHHHHhcCch
Confidence 8888887643
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.94 E-value=0.024 Score=31.68 Aligned_cols=19 Identities=53% Similarity=0.756 Sum_probs=9.0
Q ss_pred CcEEeCcCCcCCCccchhcc
Q 038858 569 IQTLNLSHNNLTGTILSTFT 588 (740)
Q Consensus 569 L~~L~L~~n~l~~~~~~~~~ 588 (740)
|++|+|++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 3333343
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.34 E-value=0.00062 Score=72.88 Aligned_cols=140 Identities=24% Similarity=0.274 Sum_probs=68.6
Q ss_pred CcEEECCCCCCcccchHHHHhc---CCCCCEEEcCCCCCCCcCC---CCCCCCC-CCCCEEecCCCccccCc--cchHHH
Q 038858 34 LEYLTLDFSSLHISLLQSIASI---FPSLKSLSMIDCKVNGVVR---SQGFPHF-KSLEYLDMNTACIALNA--SFLQII 104 (740)
Q Consensus 34 L~~L~Ls~~~~~~~~~~~l~~~---l~~L~~L~l~~~~~~~~~~---~~~l~~l-~~L~~L~L~~~~i~~~~--~~~~~l 104 (740)
+.+|.|.+|.+.+.....+... ..+|+.|++++|.+.+.-. ...+... ..|++|++..|.+...+ .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 5556666665555444443321 3455556666665542100 0112222 45555666666332211 233444
Q ss_pred hccCCCCcEEEccCcccccCCCCCCcccc----CCCCCCCEEEccCCccccc----cCccccCCCC-CCEEEccCCcCc
Q 038858 105 GASMPFLKYLSLSYFTFGTNSSRILDQGL----CPLVHLQELHMANNDLRGS----LPWCLANMTS-LRTLDVSSNQLT 174 (740)
Q Consensus 105 ~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l----~~l~~L~~L~L~~n~i~~~----~~~~l~~l~~-L~~L~L~~n~l~ 174 (740)
.. ..+++.++++.|.+...........+ ....++++|++++|.++.. +...+...++ +..|++..|.+.
T Consensus 169 ~~-~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 169 EK-NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred hc-ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 55 66677777777665411111111122 3466777777777776532 1123444444 556777777765
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.79 E-value=0.0012 Score=70.79 Aligned_cols=40 Identities=25% Similarity=0.417 Sum_probs=24.9
Q ss_pred CCcCEEeccCCcCcccCChhHhh---cCCCCcEEEccCCcCcc
Q 038858 280 KSLRLLDVSNNNFQGRIPAEIGD---ILPSLSSFNISMNALDG 319 (740)
Q Consensus 280 ~~L~~L~l~~n~l~~~~~~~~~~---~~~~L~~L~l~~n~~~~ 319 (740)
+.+++++++.|.+++.....+.. .+++++++.++.|.+..
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 56677777777776544433322 24577777787777663
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.03 E-value=0.017 Score=52.57 Aligned_cols=83 Identities=16% Similarity=0.207 Sum_probs=60.5
Q ss_pred CCEEeCCCCCCCCCCCCCccccCCCCCCcEEECCCCC-CcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCCCC
Q 038858 7 LNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSS-LHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLE 85 (740)
Q Consensus 7 L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~~~-~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 85 (740)
++.+|-++..|..+-. +.+.+++.++.|.+.+|. +.+-....+....++|+.|++++|+-.+.-....+.++++|+
T Consensus 103 IeaVDAsds~I~~eGl---e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGL---EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred EEEEecCCchHHHHHH---HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 5667777777776633 778899999999999986 444445566665789999999999643333333467889999
Q ss_pred EEecCCC
Q 038858 86 YLDMNTA 92 (740)
Q Consensus 86 ~L~L~~~ 92 (740)
.|.+.+-
T Consensus 180 ~L~l~~l 186 (221)
T KOG3864|consen 180 RLHLYDL 186 (221)
T ss_pred HHHhcCc
Confidence 9988764
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.60 E-value=0.14 Score=26.39 Aligned_cols=9 Identities=44% Similarity=0.755 Sum_probs=2.9
Q ss_pred cEEECCCCc
Q 038858 594 ESLDLYHNK 602 (740)
Q Consensus 594 ~~L~Ls~N~ 602 (740)
+.|++++|+
T Consensus 4 ~~L~l~~n~ 12 (17)
T PF13504_consen 4 RTLDLSNNR 12 (17)
T ss_dssp SEEEETSS-
T ss_pred CEEECCCCC
Confidence 333333333
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.53 E-value=0.014 Score=54.15 Aligned_cols=83 Identities=18% Similarity=0.176 Sum_probs=49.3
Q ss_pred cccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEc
Q 038858 543 SLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSV 622 (740)
Q Consensus 543 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 622 (740)
...+.||++.|++. ....-|+-++.|..|+++.|.+. ..|..+.....+..+++.+|..+ ..|.++...+++++++.
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 45566666666655 22334555566666666666665 45556666666666666666665 45556666666666666
Q ss_pred cCCccc
Q 038858 623 AYNNLS 628 (740)
Q Consensus 623 ~~N~l~ 628 (740)
-+|++.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 666543
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.03 E-value=0.35 Score=28.19 Aligned_cols=14 Identities=36% Similarity=0.617 Sum_probs=6.6
Q ss_pred CCCcEEECCCCcCC
Q 038858 591 RHIESLDLYHNKLN 604 (740)
Q Consensus 591 ~~L~~L~Ls~N~l~ 604 (740)
++|+.|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34444444444444
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.03 E-value=0.35 Score=28.19 Aligned_cols=14 Identities=36% Similarity=0.617 Sum_probs=6.6
Q ss_pred CCCcEEECCCCcCC
Q 038858 591 RHIESLDLYHNKLN 604 (740)
Q Consensus 591 ~~L~~L~Ls~N~l~ 604 (740)
++|+.|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34444444444444
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.96 E-value=0.015 Score=53.97 Aligned_cols=87 Identities=20% Similarity=0.222 Sum_probs=54.4
Q ss_pred ccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchh
Q 038858 507 LCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILST 586 (740)
Q Consensus 507 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 586 (740)
+.....-+.||++.|++.... . .+..++.+..|+++.|.+. ..|..+.....+..+++.+|..+ ..|.+
T Consensus 38 i~~~kr~tvld~~s~r~vn~~-~--------n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s 106 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLG-K--------NFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKS 106 (326)
T ss_pred hhccceeeeehhhhhHHHhhc-c--------chHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcc
Confidence 444556667777776654211 1 1222456667777777766 55666666666777777666666 45667
Q ss_pred ccCcCCCcEEECCCCcCC
Q 038858 587 FTNLRHIESLDLYHNKLN 604 (740)
Q Consensus 587 ~~~l~~L~~L~Ls~N~l~ 604 (740)
+...+.++.+++.+|.+.
T Consensus 107 ~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 107 QKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccccCCcchhhhccCcch
Confidence 777777777777777654
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.31 E-value=0.43 Score=27.78 Aligned_cols=16 Identities=25% Similarity=0.250 Sum_probs=7.9
Q ss_pred CCCCEEEccCCccccc
Q 038858 615 NALVVFSVAYNNLSGK 630 (740)
Q Consensus 615 ~~L~~L~l~~N~l~~~ 630 (740)
++|++|++++|+++..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3445555555555543
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.31 E-value=0.43 Score=27.78 Aligned_cols=16 Identities=25% Similarity=0.250 Sum_probs=7.9
Q ss_pred CCCCEEEccCCccccc
Q 038858 615 NALVVFSVAYNNLSGK 630 (740)
Q Consensus 615 ~~L~~L~l~~N~l~~~ 630 (740)
++|++|++++|+++..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3445555555555543
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=87.07 E-value=0.36 Score=27.51 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=11.5
Q ss_pred CCCcEEECCCCCCcccchHHH
Q 038858 32 TNLEYLTLDFSSLHISLLQSI 52 (740)
Q Consensus 32 ~~L~~L~Ls~~~~~~~~~~~l 52 (740)
++|++|++++|.+++.....+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 566677777776665544444
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.92 E-value=0.24 Score=28.23 Aligned_cols=14 Identities=36% Similarity=0.686 Sum_probs=5.4
Q ss_pred CCCcEEECCCCcCC
Q 038858 591 RHIESLDLYHNKLN 604 (740)
Q Consensus 591 ~~L~~L~Ls~N~l~ 604 (740)
++|++|+|++|+++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34444444444443
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.21 E-value=1.9 Score=25.19 Aligned_cols=17 Identities=29% Similarity=0.515 Sum_probs=13.0
Q ss_pred CCCCCEEeCCCCCCCCC
Q 038858 4 FSSLNTLCLMDNNLTEI 20 (740)
Q Consensus 4 l~~L~~L~Ls~n~i~~~ 20 (740)
+++|++|+|+.|+|..+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 46788888888888766
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=79.14 E-value=1.8 Score=25.78 Aligned_cols=23 Identities=22% Similarity=0.154 Sum_probs=12.9
Q ss_pred CCCcEEECCCCCCcccchHHHHh
Q 038858 32 TNLEYLTLDFSSLHISLLQSIAS 54 (740)
Q Consensus 32 ~~L~~L~Ls~~~~~~~~~~~l~~ 54 (740)
++|++|+|++|.+...-...+++
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 45666666666665544444443
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=75.82 E-value=9.7 Score=39.96 Aligned_cols=67 Identities=22% Similarity=0.313 Sum_probs=31.9
Q ss_pred CCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccc---cCCCCCcEEEeecccCCCccChh
Q 038858 279 HKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSF---GNMNFLQILDLSNNHLTGEIPEH 348 (740)
Q Consensus 279 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~ 348 (740)
.+.+++++++.|.+.+..|..+... .--+.++.|..++.....+ +.=..+.+++++.|...+.+|..
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p---~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~ 233 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQP---GNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRT 233 (553)
T ss_pred cchhhhhccCCCcccccCCccccCC---CCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhH
Confidence 3556677777777665555544331 1114455555442211100 11124556666666655555543
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=75.50 E-value=11 Score=39.60 Aligned_cols=37 Identities=30% Similarity=0.327 Sum_probs=23.2
Q ss_pred CCCEEeccCCcccCCC---CCCCCCCCCcCEEeccCCcCc
Q 038858 257 KLESLSLVNDSLAGPF---RLPIHSHKSLRLLDVSNNNFQ 293 (740)
Q Consensus 257 ~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L~l~~n~l~ 293 (740)
-+..+.++.+...... ...+...+.+.+|++++|.-.
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcc
Confidence 3666777777654322 123445678888999988654
No 91
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=65.33 E-value=4.5 Score=23.57 Aligned_cols=13 Identities=23% Similarity=0.542 Sum_probs=6.3
Q ss_pred CCcEEECCCCcCC
Q 038858 592 HIESLDLYHNKLN 604 (740)
Q Consensus 592 ~L~~L~Ls~N~l~ 604 (740)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3444555555544
No 92
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=60.11 E-value=7.8 Score=22.43 Aligned_cols=11 Identities=27% Similarity=0.419 Sum_probs=5.6
Q ss_pred CCCCEEecCCC
Q 038858 82 KSLEYLDMNTA 92 (740)
Q Consensus 82 ~~L~~L~L~~~ 92 (740)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555554
No 93
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=55.57 E-value=5.7 Score=27.52 Aligned_cols=10 Identities=50% Similarity=1.129 Sum_probs=8.8
Q ss_pred CCCCCCCCCC
Q 038858 649 NPFLCGLPLP 658 (740)
Q Consensus 649 Np~~C~~~~~ 658 (740)
|||.|+|.+.
T Consensus 1 NP~~CdC~l~ 10 (51)
T smart00082 1 NPFICDCELR 10 (51)
T ss_pred CCccCcCCch
Confidence 8999999864
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=51.76 E-value=8 Score=41.46 Aligned_cols=64 Identities=25% Similarity=0.178 Sum_probs=40.0
Q ss_pred ccccceEEccCccccccCC--cCccCCCcCcEEeCcCCcCCCccchhccC--cCCCcEEECCCCcCCc
Q 038858 542 LSLLSGIDLSCNKLIGDIP--PQIGNLTRIQTLNLSHNNLTGTILSTFTN--LRHIESLDLYHNKLNG 605 (740)
Q Consensus 542 l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~Ls~N~l~~ 605 (740)
.+.+..++|++|++..... ..-...+.|+.|+|++|...-.....+.+ ...|++|-+.+|++..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 4678888899998864321 11123478999999998322112223332 2457888999998863
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=44.29 E-value=12 Score=40.10 Aligned_cols=36 Identities=33% Similarity=0.345 Sum_probs=20.2
Q ss_pred CCcCcEEeCcCCcCCCccc--hhccCcCCCcEEECCCC
Q 038858 566 LTRIQTLNLSHNNLTGTIL--STFTNLRHIESLDLYHN 601 (740)
Q Consensus 566 l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~N 601 (740)
.+.+..++|++|++....- ..-...|.|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 4556667777777664211 11123466677777776
No 96
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=41.96 E-value=20 Score=30.39 Aligned_cols=19 Identities=11% Similarity=0.205 Sum_probs=7.5
Q ss_pred hhhHHHHHHHHHHhhhchh
Q 038858 691 TSYVIVIFGIVIILYVNPY 709 (740)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~ 709 (740)
+++++++++++++++|..+
T Consensus 71 ~gv~aGvIg~Illi~y~ir 89 (122)
T PF01102_consen 71 FGVMAGVIGIILLISYCIR 89 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444443333
No 97
>PF15050 SCIMP: SCIMP protein
Probab=33.96 E-value=43 Score=27.76 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=13.5
Q ss_pred hhhhhHHHHHHHHHHhhhchhhHHHH
Q 038858 689 FTTSYVIVIFGIVIILYVNPYWRRRW 714 (740)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (740)
++++++++-+++..++|+.|+|..+.
T Consensus 12 LAVaII~vS~~lglIlyCvcR~~lRq 37 (133)
T PF15050_consen 12 LAVAIILVSVVLGLILYCVCRWQLRQ 37 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33334444444455566667765554
No 98
>PF15102 TMEM154: TMEM154 protein family
Probab=32.26 E-value=15 Score=31.88 Aligned_cols=16 Identities=13% Similarity=0.223 Sum_probs=7.0
Q ss_pred HHHHHHHhhhchhhHH
Q 038858 697 IFGIVIILYVNPYWRR 712 (740)
Q Consensus 697 ~~~~~~~~~~~~~~~~ 712 (740)
+++|++++++++||+.
T Consensus 72 Ll~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 72 LLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHheeEEeeccc
Confidence 3344444444444443
No 99
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=27.89 E-value=36 Score=44.38 Aligned_cols=32 Identities=28% Similarity=0.302 Sum_probs=20.8
Q ss_pred EccCccccccCCcCccCCCcCcEEeCcCCcCC
Q 038858 549 DLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLT 580 (740)
Q Consensus 549 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 580 (740)
||++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 46666666555566666666777777666554
No 100
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=27.59 E-value=77 Score=25.57 Aligned_cols=28 Identities=7% Similarity=0.051 Sum_probs=14.5
Q ss_pred hhhhhHHHHHHHHHHhhhchhhHHHHHH
Q 038858 689 FTTSYVIVIFGIVIILYVNPYWRRRWFY 716 (740)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (740)
+++++++++..+++++.+||.-+++++.
T Consensus 21 VGVv~~al~~SlLIalaaKC~~~~k~~~ 48 (102)
T PF15176_consen 21 VGVVVTALVTSLLIALAAKCPVWYKYLA 48 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 3333444444445556677776555543
Done!