Query 038858
Match_columns 740
No_of_seqs 562 out of 5099
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 06:06:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038858.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038858hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.5E-71 5.2E-76 643.0 46.4 612 1-665 73-753 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.1E-65 7.2E-70 591.7 45.4 585 32-656 50-721 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 8.9E-61 3E-65 548.9 47.2 592 8-657 7-627 (680)
4 3j0a_A TOLL-like receptor 5; m 100.0 4.4E-57 1.5E-61 527.6 43.6 551 35-679 7-607 (844)
5 1ziw_A TOLL-like receptor 3; i 100.0 3.7E-56 1.2E-60 510.6 43.9 580 5-632 25-626 (680)
6 3t6q_A CD180 antigen; protein- 100.0 2.1E-54 7.2E-59 489.3 42.8 534 36-657 16-565 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1.8E-53 6E-58 481.8 39.5 533 34-657 13-563 (606)
8 3t6q_A CD180 antigen; protein- 100.0 1.6E-52 5.5E-57 473.9 41.1 535 8-632 15-564 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 3.8E-51 1.3E-55 477.5 39.4 545 9-632 8-564 (844)
10 3vq2_A TLR4, TOLL-like recepto 100.0 1.2E-49 4E-54 450.5 40.9 574 7-676 13-601 (606)
11 2z63_A TOLL-like receptor 4, v 100.0 3.1E-46 1.1E-50 419.6 39.1 470 109-658 28-537 (570)
12 2z63_A TOLL-like receptor 4, v 100.0 1.7E-45 5.9E-50 413.5 38.5 492 32-634 28-537 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 5.6E-46 1.9E-50 415.3 33.0 495 58-656 6-514 (549)
14 4g8a_A TOLL-like receptor 4; l 100.0 8.3E-45 2.8E-49 414.0 40.7 534 57-674 52-621 (635)
15 2z7x_B TOLL-like receptor 1, v 100.0 2.3E-45 7.8E-50 407.1 25.3 371 255-657 89-486 (520)
16 2z81_A CD282 antigen, TOLL-lik 100.0 9.8E-44 3.4E-48 397.1 35.3 489 4-606 4-512 (549)
17 4eco_A Uncharacterized protein 100.0 1.2E-45 4.2E-50 416.6 18.4 371 265-653 192-601 (636)
18 4eco_A Uncharacterized protein 100.0 4.7E-45 1.6E-49 411.8 22.8 377 223-656 198-630 (636)
19 4ecn_A Leucine-rich repeat pro 100.0 1.9E-43 6.6E-48 404.0 29.4 484 137-656 323-870 (876)
20 2z7x_B TOLL-like receptor 1, v 100.0 1.5E-42 5.3E-47 384.4 29.9 455 60-629 3-482 (520)
21 4g8a_A TOLL-like receptor 4; l 100.0 9E-42 3.1E-46 388.9 34.2 516 32-629 52-581 (635)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.8E-42 9.4E-47 385.4 25.4 459 83-657 32-515 (562)
23 4ecn_A Leucine-rich repeat pro 100.0 6.8E-42 2.3E-46 391.3 26.6 381 223-628 440-864 (876)
24 3v47_A TOLL-like receptor 5B a 100.0 1.2E-39 4.1E-44 355.0 27.1 372 259-657 13-413 (455)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.2E-39 4.1E-44 364.0 27.0 458 58-629 32-511 (562)
26 3v47_A TOLL-like receptor 5B a 100.0 8.4E-39 2.9E-43 348.4 29.4 383 235-633 14-413 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 1.7E-37 5.9E-42 334.4 23.4 283 306-654 132-431 (454)
28 2id5_A Lingo-1, leucine rich r 100.0 2.7E-36 9.3E-41 330.3 25.3 321 283-629 14-334 (477)
29 1jl5_A Outer protein YOPM; leu 100.0 1.3E-36 4.6E-41 327.5 22.1 321 231-634 111-435 (454)
30 2id5_A Lingo-1, leucine rich r 100.0 3.1E-36 1.1E-40 329.8 24.2 323 259-607 14-336 (477)
31 1o6v_A Internalin A; bacterial 100.0 3.2E-34 1.1E-38 312.2 33.8 346 230-630 45-390 (466)
32 1o6v_A Internalin A; bacterial 100.0 1.4E-34 4.8E-39 315.0 29.8 347 253-653 43-389 (466)
33 3o6n_A APL1; leucine-rich repe 100.0 2.4E-34 8.1E-39 306.0 26.7 334 279-655 44-377 (390)
34 3o6n_A APL1; leucine-rich repe 100.0 6.3E-34 2.1E-38 302.8 23.6 315 304-658 44-358 (390)
35 3bz5_A Internalin-J, INLJ; leu 100.0 5.3E-34 1.8E-38 307.5 21.2 352 225-635 36-394 (457)
36 3oja_B Anopheles plasmodium-re 100.0 3.5E-33 1.2E-37 313.3 26.5 335 279-656 50-384 (597)
37 4fmz_A Internalin; leucine ric 100.0 2.5E-32 8.6E-37 285.8 29.9 304 279-628 43-346 (347)
38 1ogq_A PGIP-2, polygalacturona 100.0 1.2E-33 4.1E-38 290.0 18.2 259 378-660 50-312 (313)
39 3oja_B Anopheles plasmodium-re 100.0 3.9E-33 1.3E-37 312.9 23.6 313 304-656 50-362 (597)
40 4fmz_A Internalin; leucine ric 100.0 4.9E-32 1.7E-36 283.6 29.1 303 304-651 43-345 (347)
41 3bz5_A Internalin-J, INLJ; leu 100.0 3.2E-32 1.1E-36 293.6 26.0 345 253-656 39-391 (457)
42 2ft3_A Biglycan; proteoglycan, 100.0 1E-30 3.6E-35 271.3 24.8 129 488-625 194-330 (332)
43 1z7x_W Ribonuclease inhibitor; 100.0 6E-34 2.1E-38 310.7 -1.3 361 231-604 3-411 (461)
44 1xku_A Decorin; proteoglycan, 100.0 5.6E-30 1.9E-34 265.6 26.4 290 281-625 32-329 (330)
45 2ft3_A Biglycan; proteoglycan, 100.0 4E-30 1.4E-34 266.8 24.6 290 330-650 34-331 (332)
46 1xku_A Decorin; proteoglycan, 100.0 8.8E-30 3E-34 264.2 26.2 290 330-649 32-329 (330)
47 1ogq_A PGIP-2, polygalacturona 100.0 9.6E-31 3.3E-35 268.4 14.0 233 373-629 71-306 (313)
48 1z7x_W Ribonuclease inhibitor; 100.0 6.8E-33 2.3E-37 302.3 -2.4 362 256-630 3-413 (461)
49 3zyj_A Leucine-rich repeat-con 100.0 9.4E-29 3.2E-33 266.9 24.0 233 402-657 64-297 (440)
50 3zyi_A Leucine-rich repeat-con 100.0 1.2E-28 4.2E-33 267.0 24.1 232 403-657 76-308 (452)
51 2z66_A Variable lymphocyte rec 100.0 3.8E-29 1.3E-33 256.5 18.5 251 382-657 11-266 (306)
52 2z80_A TOLL-like receptor 2, v 100.0 2.1E-29 7.3E-34 263.8 14.9 284 327-656 29-318 (353)
53 1ozn_A Reticulon 4 receptor; N 100.0 8.2E-28 2.8E-32 243.7 17.8 209 427-656 33-242 (285)
54 2z80_A TOLL-like receptor 2, v 100.0 4.8E-28 1.6E-32 253.5 15.5 283 304-632 30-318 (353)
55 2z66_A Variable lymphocyte rec 99.9 1.3E-27 4.3E-32 245.2 17.0 230 355-630 29-263 (306)
56 3ogk_B Coronatine-insensitive 99.9 7.3E-30 2.5E-34 287.7 -0.4 235 226-463 265-526 (592)
57 3ogk_B Coronatine-insensitive 99.9 5.2E-30 1.8E-34 288.9 -2.1 433 50-553 66-548 (592)
58 1ozn_A Reticulon 4 receptor; N 99.9 1.6E-26 5.3E-31 234.3 19.5 85 544-628 154-238 (285)
59 4fcg_A Uncharacterized protein 99.9 2.1E-26 7.2E-31 237.4 20.2 236 377-629 80-315 (328)
60 3zyi_A Leucine-rich repeat-con 99.9 8.2E-26 2.8E-30 244.8 24.3 248 331-604 56-303 (452)
61 3zyj_A Leucine-rich repeat-con 99.9 9.9E-26 3.4E-30 243.3 24.6 248 331-604 45-292 (440)
62 4fcg_A Uncharacterized protein 99.9 3.3E-26 1.1E-30 236.0 18.6 226 400-651 79-313 (328)
63 3g06_A SSPH2 (leucine-rich rep 99.9 8.1E-25 2.8E-29 242.5 26.7 265 281-612 41-305 (622)
64 3oja_A Leucine-rich immune mol 99.9 6.9E-27 2.4E-31 254.3 9.8 247 377-657 33-287 (487)
65 3o53_A Protein LRIM1, AGAP0063 99.9 3.6E-27 1.2E-31 242.6 6.6 257 331-623 12-270 (317)
66 3o53_A Protein LRIM1, AGAP0063 99.9 4E-27 1.4E-31 242.2 6.8 261 355-649 11-272 (317)
67 2z62_A TOLL-like receptor 4, v 99.9 2.7E-25 9.2E-30 224.0 19.5 209 426-656 28-241 (276)
68 1wwl_A Monocyte differentiatio 99.9 8.7E-27 3E-31 239.1 6.8 252 325-629 39-310 (312)
69 3g06_A SSPH2 (leucine-rich rep 99.9 2.5E-24 8.5E-29 238.6 26.8 265 306-636 41-305 (622)
70 2o6q_A Variable lymphocyte rec 99.9 1.2E-24 4.2E-29 218.1 21.5 206 403-656 17-222 (270)
71 2p1m_B Transport inhibitor res 99.9 6.4E-28 2.2E-32 272.0 -4.7 133 377-523 371-518 (594)
72 2p1m_B Transport inhibitor res 99.9 9.4E-28 3.2E-32 270.6 -4.3 314 2-337 63-405 (594)
73 1wwl_A Monocyte differentiatio 99.9 6.8E-27 2.3E-31 239.8 1.9 249 376-653 41-310 (312)
74 1p9a_G Platelet glycoprotein I 99.9 4.4E-24 1.5E-28 215.8 19.8 208 398-657 6-213 (290)
75 3oja_A Leucine-rich immune mol 99.9 6.4E-25 2.2E-29 238.8 13.0 235 354-623 34-270 (487)
76 2z62_A TOLL-like receptor 4, v 99.9 6E-23 2.1E-27 206.8 20.6 212 355-608 29-241 (276)
77 2o6q_A Variable lymphocyte rec 99.9 1.6E-22 5.5E-27 202.7 23.1 204 378-629 16-219 (270)
78 1p9a_G Platelet glycoprotein I 99.9 1.6E-22 5.5E-27 204.3 20.5 203 374-604 6-208 (290)
79 3rfs_A Internalin B, repeat mo 99.9 6.1E-23 2.1E-27 205.9 16.6 164 483-656 59-222 (272)
80 3m19_A Variable lymphocyte rec 99.9 2.5E-22 8.5E-27 198.9 18.9 159 488-654 36-194 (251)
81 3rfs_A Internalin B, repeat mo 99.9 7.5E-23 2.6E-27 205.2 15.3 209 398-638 37-245 (272)
82 3goz_A Leucine-rich repeat-con 99.9 3.6E-23 1.2E-27 216.9 3.8 267 310-610 3-303 (362)
83 1h6u_A Internalin H; cell adhe 99.9 1.8E-21 6.2E-26 198.7 15.9 194 400-630 39-232 (308)
84 3m19_A Variable lymphocyte rec 99.9 8E-21 2.7E-25 188.0 19.6 140 483-630 55-194 (251)
85 2xwt_C Thyrotropin receptor; s 99.9 2.7E-21 9.2E-26 190.0 15.0 79 543-625 155-236 (239)
86 2xwt_C Thyrotropin receptor; s 99.9 2E-21 6.8E-26 191.0 14.0 197 427-650 32-237 (239)
87 3goz_A Leucine-rich repeat-con 99.9 4.5E-23 1.6E-27 216.2 2.3 258 360-630 4-299 (362)
88 2v9t_B SLIT homolog 2 protein 99.9 1.9E-21 6.4E-26 187.9 13.3 175 490-675 14-204 (220)
89 2ast_B S-phase kinase-associat 99.9 1E-22 3.4E-27 211.8 3.2 255 330-636 48-314 (336)
90 2ca6_A RAN GTPase-activating p 99.9 5.5E-23 1.9E-27 217.9 0.9 193 423-632 91-320 (386)
91 4glp_A Monocyte differentiatio 99.8 7.9E-21 2.7E-25 194.6 15.3 203 354-604 91-307 (310)
92 2ca6_A RAN GTPase-activating p 99.8 1.6E-22 5.5E-27 214.3 2.2 248 395-655 25-319 (386)
93 2v70_A SLIT-2, SLIT homolog 2 99.8 6.9E-21 2.4E-25 183.9 12.9 157 490-657 14-171 (220)
94 2ast_B S-phase kinase-associat 99.8 5.7E-22 1.9E-26 206.1 5.2 256 305-612 47-314 (336)
95 4glp_A Monocyte differentiatio 99.8 1.3E-20 4.5E-25 192.9 14.2 227 231-462 64-306 (310)
96 1h6u_A Internalin H; cell adhe 99.8 2.3E-20 7.9E-25 190.5 15.4 208 407-653 24-231 (308)
97 2xot_A Amphoterin-induced prot 99.8 1.3E-20 4.5E-25 197.1 11.8 161 488-656 40-206 (361)
98 3e6j_A Variable lymphocyte rec 99.8 2.3E-19 7.7E-24 174.5 16.4 156 489-656 21-176 (229)
99 4ay9_X Follicle-stimulating ho 99.8 5.9E-19 2E-23 183.8 19.5 125 283-411 12-137 (350)
100 4ay9_X Follicle-stimulating ho 99.8 1.2E-18 4E-23 181.5 20.3 240 332-601 12-256 (350)
101 3cvr_A Invasion plasmid antige 99.8 4.4E-19 1.5E-23 194.0 15.2 186 379-613 60-252 (571)
102 2o6s_A Variable lymphocyte rec 99.8 1E-18 3.4E-23 167.6 14.3 141 483-638 48-188 (208)
103 2o6s_A Variable lymphocyte rec 99.8 3.9E-18 1.3E-22 163.5 15.9 133 379-524 29-161 (208)
104 2v9t_B SLIT homolog 2 protein 99.8 3.5E-18 1.2E-22 164.9 15.3 135 487-629 32-166 (220)
105 2wfh_A SLIT homolog 2 protein 99.8 1.9E-18 6.6E-23 162.7 12.6 150 514-675 13-178 (193)
106 2v70_A SLIT-2, SLIT homolog 2 99.8 4.2E-18 1.4E-22 164.3 14.4 135 488-630 33-168 (220)
107 1h6t_A Internalin B; cell adhe 99.8 8.1E-18 2.8E-22 170.0 16.9 130 483-630 86-215 (291)
108 1w8a_A SLIT protein; signaling 99.8 4.3E-18 1.5E-22 160.5 13.8 150 514-674 11-177 (192)
109 3cvr_A Invasion plasmid antige 99.8 1E-17 3.4E-22 183.3 18.4 186 403-637 60-252 (571)
110 1h6t_A Internalin B; cell adhe 99.7 3.6E-18 1.2E-22 172.6 10.6 191 426-653 24-214 (291)
111 1m9s_A Internalin B; cell inva 99.7 1.8E-17 6.1E-22 183.5 17.1 131 483-631 83-213 (605)
112 2xot_A Amphoterin-induced prot 99.7 1.1E-17 3.6E-22 175.0 14.5 176 405-604 21-202 (361)
113 3e6j_A Variable lymphocyte rec 99.7 3.3E-17 1.1E-21 159.2 16.5 137 487-632 40-176 (229)
114 1xeu_A Internalin C; cellular 99.7 1.6E-17 5.4E-22 165.0 12.3 174 424-633 17-190 (263)
115 1m9s_A Internalin B; cell inva 99.7 2E-17 6.9E-22 183.1 13.2 188 356-604 23-210 (605)
116 3sb4_A Hypothetical leucine ri 99.7 3.8E-17 1.3E-21 168.6 12.0 102 510-621 225-327 (329)
117 4ezg_A Putative uncharacterize 99.7 5.6E-17 1.9E-21 153.7 12.1 132 483-628 62-194 (197)
118 3sb4_A Hypothetical leucine ri 99.7 4.2E-17 1.4E-21 168.3 11.7 102 542-645 225-327 (329)
119 1dce_A Protein (RAB geranylger 99.7 3.2E-19 1.1E-23 196.3 -6.3 120 512-644 442-565 (567)
120 1xeu_A Internalin C; cellular 99.7 6.5E-17 2.2E-21 160.6 10.2 171 448-654 17-187 (263)
121 4ezg_A Putative uncharacterize 99.7 1.8E-16 6.3E-21 150.1 12.5 153 483-651 40-193 (197)
122 1w8a_A SLIT protein; signaling 99.7 1.9E-16 6.5E-21 149.1 11.8 113 488-608 30-143 (192)
123 1dce_A Protein (RAB geranylger 99.7 1.4E-18 4.8E-23 191.3 -4.9 122 488-622 442-567 (567)
124 2o6r_A Variable lymphocyte rec 99.7 7.5E-16 2.6E-20 143.2 13.1 133 513-656 9-141 (177)
125 4fdw_A Leucine rich hypothetic 99.6 6E-15 2.1E-19 155.1 20.3 265 304-627 112-382 (401)
126 4fdw_A Leucine rich hypothetic 99.6 1.2E-14 4.1E-19 152.8 20.6 271 279-604 112-383 (401)
127 2ell_A Acidic leucine-rich nuc 99.6 2E-15 7E-20 139.0 10.8 134 487-630 24-162 (168)
128 4fs7_A Uncharacterized protein 99.6 2.8E-14 9.6E-19 151.0 20.6 128 483-625 249-376 (394)
129 4b8c_D Glucose-repressible alc 99.6 3.5E-16 1.2E-20 177.9 5.0 215 377-628 172-404 (727)
130 4b8c_D Glucose-repressible alc 99.6 4E-16 1.4E-20 177.3 5.1 224 329-604 173-404 (727)
131 2je0_A Acidic leucine-rich nuc 99.6 3.1E-15 1.1E-19 134.6 9.9 127 487-623 17-148 (149)
132 2wfh_A SLIT homolog 2 protein 99.6 1.9E-14 6.3E-19 135.4 13.8 128 490-629 13-140 (193)
133 2je0_A Acidic leucine-rich nuc 99.6 6.3E-15 2.1E-19 132.6 9.9 130 509-648 15-149 (149)
134 2o6r_A Variable lymphocyte rec 99.6 2E-14 6.8E-19 133.5 13.4 133 489-632 9-141 (177)
135 3g39_A Variable lymphocyte rec 99.6 9.7E-15 3.3E-19 134.3 11.1 109 545-656 11-119 (170)
136 2ell_A Acidic leucine-rich nuc 99.6 8.9E-15 3E-19 134.6 10.7 134 509-652 22-160 (168)
137 4fs7_A Uncharacterized protein 99.6 1.1E-13 3.8E-18 146.4 20.5 314 296-648 62-375 (394)
138 2r9u_A Variable lymphocyte rec 99.5 3.2E-14 1.1E-18 131.2 11.1 108 546-656 15-122 (174)
139 1a9n_A U2A', U2A'; complex (nu 99.5 5.2E-14 1.8E-18 130.5 9.1 131 486-628 18-153 (176)
140 1a9n_A U2A', U2A'; complex (nu 99.5 6.8E-14 2.3E-18 129.7 9.6 134 506-651 14-152 (176)
141 4gt6_A Cell surface protein; l 99.4 6.1E-12 2.1E-16 133.0 21.9 131 481-626 259-389 (394)
142 1ds9_A Outer arm dynein; leuci 99.4 3.6E-15 1.2E-19 141.3 -3.1 160 447-628 15-185 (198)
143 1ds9_A Outer arm dynein; leuci 99.4 2.2E-15 7.4E-20 142.9 -4.9 155 483-652 14-185 (198)
144 4gt6_A Cell surface protein; l 99.4 1.6E-11 5.6E-16 129.7 23.7 145 487-647 242-386 (394)
145 3g39_A Variable lymphocyte rec 99.4 9.4E-13 3.2E-17 120.9 12.1 109 513-632 11-119 (170)
146 2r9u_A Variable lymphocyte rec 99.4 2.9E-12 9.8E-17 118.0 12.3 106 514-630 15-120 (174)
147 2ifg_A High affinity nerve gro 99.4 1.2E-12 4.1E-17 136.1 10.5 106 548-656 13-120 (347)
148 3un9_A NLR family member X1; l 99.3 1.7E-13 5.8E-18 142.6 -2.5 44 563-606 207-254 (372)
149 3un9_A NLR family member X1; l 99.2 4.1E-13 1.4E-17 139.7 -3.0 168 4-175 71-253 (372)
150 4h09_A Hypothetical leucine ri 99.2 2.7E-09 9.3E-14 112.0 24.3 131 482-624 212-342 (379)
151 2ifg_A High affinity nerve gro 99.2 2.8E-11 9.7E-16 125.6 8.6 102 492-604 13-116 (347)
152 4h09_A Hypothetical leucine ri 99.1 3.3E-09 1.1E-13 111.4 22.3 298 304-648 45-342 (379)
153 2ra8_A Uncharacterized protein 98.9 1.1E-09 3.8E-14 112.7 4.9 34 486-519 192-227 (362)
154 2ra8_A Uncharacterized protein 98.7 2.8E-08 9.6E-13 102.2 10.0 162 227-392 135-321 (362)
155 1io0_A Tropomodulin; LRR prote 98.5 3.4E-08 1.1E-12 91.6 1.6 119 482-628 31-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.4 5.3E-08 1.8E-12 90.3 1.8 126 442-604 28-164 (185)
157 3rfe_A Platelet glycoprotein I 98.3 6.9E-07 2.4E-11 76.8 5.4 61 595-657 12-73 (130)
158 3e4g_A ATP synthase subunit S, 98.3 1.6E-07 5.4E-12 84.4 1.4 85 32-120 61-150 (176)
159 3rw6_A Nuclear RNA export fact 98.3 1.4E-07 4.9E-12 91.6 0.7 63 542-606 169-235 (267)
160 3rw6_A Nuclear RNA export fact 98.2 1.1E-06 3.8E-11 85.4 6.2 80 564-645 167-257 (267)
161 3e4g_A ATP synthase subunit S, 98.0 1.2E-06 4E-11 78.8 1.7 86 57-148 61-150 (176)
162 1pgv_A TMD-1, tropomodulin TMD 97.4 4.1E-05 1.4E-09 70.1 1.9 65 563-627 94-169 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00013 4.3E-09 66.9 2.5 116 485-604 39-170 (197)
164 3rfe_A Platelet glycoprotein I 96.7 0.003 1E-07 53.9 6.7 56 547-604 12-68 (130)
165 2lz0_A Uncharacterized protein 60.4 8.1 0.00028 30.5 3.8 46 554-600 7-52 (100)
166 2lz0_A Uncharacterized protein 58.4 25 0.00084 27.6 6.4 41 394-435 12-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.5e-71 Score=643.01 Aligned_cols=612 Identities=30% Similarity=0.439 Sum_probs=526.5
Q ss_pred CCCCCCCCEEeCCCCCCCCCCCCCccccCCCCCCcEEECCCCCCcccchH--HHHhcCCCCCEEEcCCCCCCCcCCCCCC
Q 038858 1 MGSFSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQ--SIASIFPSLKSLSMIDCKVNGVVRSQGF 78 (740)
Q Consensus 1 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~--~l~~~l~~L~~L~l~~~~~~~~~~~~~l 78 (740)
|++++.|+.++++.+.+.. .+ +.++++++|++|++++|.+.+..+. .+.. +++|++|++++|.+.+..+...+
T Consensus 73 l~~L~~L~~l~~~~~~~~~-l~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~ 147 (768)
T 3rgz_A 73 LLSLTGLESLFLSNSHING-SV---SGFKCSASLTSLDLSRNSLSGPVTTLTSLGS-CSGLKFLNVSSNTLDFPGKVSGG 147 (768)
T ss_dssp TTTCTTCCEEECTTSCEEE-CC---CCCCCCTTCCEEECCSSEEEEEGGGGGGGGG-CTTCCEEECCSSEEECCSSCCSC
T ss_pred HhccCcccccCCcCCCcCC-Cc---hhhccCCCCCEEECCCCcCCCcCCChHHHhC-CCCCCEEECcCCccCCcCCHHHh
Confidence 3566777777777765543 23 5789999999999999999987777 8888 99999999999999877776656
Q ss_pred CCCCCCCEEecCCCccccCccchHH---HhccCCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCccccccCc
Q 038858 79 PHFKSLEYLDMNTACIALNASFLQI---IGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPW 155 (740)
Q Consensus 79 ~~l~~L~~L~L~~~~i~~~~~~~~~---l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~ 155 (740)
.++++|++|++++| .+.+..+.. +.. +++|++|++++|.+. +.. .+..+++|++|++++|.+.+..|.
T Consensus 148 ~~l~~L~~L~Ls~n--~l~~~~~~~~~~~~~-l~~L~~L~Ls~n~l~---~~~---~~~~l~~L~~L~Ls~n~l~~~~~~ 218 (768)
T 3rgz_A 148 LKLNSLEVLDLSAN--SISGANVVGWVLSDG-CGELKHLAISGNKIS---GDV---DVSRCVNLEFLDVSSNNFSTGIPF 218 (768)
T ss_dssp CCCTTCSEEECCSS--CCEEETHHHHHHTTC-CTTCCEEECCSSEEE---SCC---BCTTCTTCCEEECCSSCCCSCCCB
T ss_pred ccCCCCCEEECCCC--ccCCcCChhhhhhcc-CCCCCEEECCCCccc---ccC---CcccCCcCCEEECcCCcCCCCCcc
Confidence 89999999999999 445555554 455 999999999999987 433 347899999999999999987776
Q ss_pred cccCCCCCCEEEccCCcCccccCCCchhhcccccccchhcccccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCCE
Q 038858 156 CLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLED 235 (740)
Q Consensus 156 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 235 (740)
++++++|++|++++|.+++.+|..+ ..+++|++|++ .++...+..|.. .+++|+.
T Consensus 219 -l~~l~~L~~L~Ls~n~l~~~~~~~l---------------------~~l~~L~~L~L-s~n~l~~~~~~~--~l~~L~~ 273 (768)
T 3rgz_A 219 -LGDCSALQHLDISGNKLSGDFSRAI---------------------STCTELKLLNI-SSNQFVGPIPPL--PLKSLQY 273 (768)
T ss_dssp -CTTCCSCCEEECCSSCCCSCHHHHT---------------------TTCSSCCEEEC-CSSCCEESCCCC--CCTTCCE
T ss_pred -cccCCCCCEEECcCCcCCCcccHHH---------------------hcCCCCCEEEC-CCCcccCccCcc--ccCCCCE
Confidence 9999999999999999987655432 45568999999 555666555544 7889999
Q ss_pred EEccCCCCcccCchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCC
Q 038858 236 VDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMN 315 (740)
Q Consensus 236 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n 315 (740)
|++++|.+++.+|..+...+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.+|...+..+++|++|++++|
T Consensus 274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS
T ss_pred EECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC
Confidence 99999999988888875556999999999999988888889999999999999999988888885666899999999999
Q ss_pred cCcccCCccccCCC-CCcEEEeecccCCCccChhhhh-cCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCccccc
Q 038858 316 ALDGSIPSSFGNMN-FLQILDLSNNHLTGEIPEHLAI-GCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEE 393 (740)
Q Consensus 316 ~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 393 (740)
.+++.+|..+..++ +|++|++++|.+++.++..+.. .+++|++|++++|.+.+..+..+..+++|++|++++|++.+.
T Consensus 354 ~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 433 (768)
T 3rgz_A 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433 (768)
T ss_dssp EEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESC
T ss_pred ccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCc
Confidence 99888898888887 8999999999998777776652 267899999999999988888888999999999999999988
Q ss_pred CccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCC
Q 038858 394 IPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYN 473 (740)
Q Consensus 394 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n 473 (740)
.|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++
T Consensus 434 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~--------- 504 (768)
T 3rgz_A 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG--------- 504 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS---------
T ss_pred ccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCC---------
Confidence 89899999999999999999998889889999999999999999998899999999999999999998873
Q ss_pred cCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccc------------------
Q 038858 474 RLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTA------------------ 535 (740)
Q Consensus 474 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~------------------ 535 (740)
.+|.++..+++|++|++++|.+++.+|..++.+++|+.|++++|++.+.+|..+....
T Consensus 505 ----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (768)
T 3rgz_A 505 ----EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 580 (768)
T ss_dssp ----CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEEC
T ss_pred ----cCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccc
Confidence 5677788899999999999999988999999999999999999999887776553210
Q ss_pred --------------------------------------------cchhhhccccceEEccCccccccCCcCccCCCcCcE
Q 038858 536 --------------------------------------------LHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQT 571 (740)
Q Consensus 536 --------------------------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 571 (740)
...+..+++|+.|++++|++++.+|..++.+++|+.
T Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 660 (768)
T 3rgz_A 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI 660 (768)
T ss_dssp CSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCE
T ss_pred ccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCE
Confidence 001233578999999999999999999999999999
Q ss_pred EeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCC
Q 038858 572 LNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPF 651 (740)
Q Consensus 572 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~ 651 (740)
|+|++|++++.+|..|+++++|++|||++|++++.+|..+..+++|++|++++|+++|.+|+. +++.++...++.|||+
T Consensus 661 L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~ 739 (768)
T 3rgz_A 661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPG 739 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTE
T ss_pred EeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCch
Confidence 999999999999999999999999999999999999999999999999999999999999986 7899999999999999
Q ss_pred CCCCCCCCCCCCCc
Q 038858 652 LCGLPLPICRSPVT 665 (740)
Q Consensus 652 ~C~~~~~~c~~~~~ 665 (740)
+|+.|+..|.....
T Consensus 740 Lcg~~l~~C~~~~~ 753 (768)
T 3rgz_A 740 LCGYPLPRCDPSNA 753 (768)
T ss_dssp EESTTSCCCCSCC-
T ss_pred hcCCCCcCCCCCcc
Confidence 99988878876543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.1e-65 Score=591.66 Aligned_cols=585 Identities=29% Similarity=0.432 Sum_probs=365.5
Q ss_pred CCCcEEECCCCCCccc---chHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCCCCEEecCCCccccCccchH--HHhc
Q 038858 32 TNLEYLTLDFSSLHIS---LLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQ--IIGA 106 (740)
Q Consensus 32 ~~L~~L~Ls~~~~~~~---~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~--~l~~ 106 (740)
.+++.|+++++.+.+. .+..+.+ ++.|+.++++.+.+.. .+ ..+..+++|++|+|++| .+.+.++. .++.
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~-L~~L~~l~~~~~~~~~-l~-~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~l~~ 124 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLS-LTGLESLFLSNSHING-SV-SGFKCSASLTSLDLSRN--SLSGPVTTLTSLGS 124 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTT-CTTCCEEECTTSCEEE-CC-CCCCCCTTCCEEECCSS--EEEEEGGGGGGGGG
T ss_pred CcEEEEECCCCCcCCccCccChhHhc-cCcccccCCcCCCcCC-Cc-hhhccCCCCCEEECCCC--cCCCcCCChHHHhC
Confidence 4566666666666554 4455555 5566666666555431 22 23666666666666666 33444444 5555
Q ss_pred cCCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCccccccCcc---ccCCCCCCEEEccCCcCccccCCC---
Q 038858 107 SMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWC---LANMTSLRTLDVSSNQLTGSISSS--- 180 (740)
Q Consensus 107 ~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~---l~~l~~L~~L~L~~n~l~~~~~~~--- 180 (740)
+++|++|++++|.+. +..+...+.++++|++|++++|++++..+.. +.++++|++|++++|.+.+..+..
T Consensus 125 -l~~L~~L~Ls~n~l~---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~ 200 (768)
T 3rgz_A 125 -CSGLKFLNVSSNTLD---FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV 200 (768)
T ss_dssp -CTTCCEEECCSSEEE---CCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCT
T ss_pred -CCCCCEEECcCCccC---CcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCC
Confidence 666666666666665 4444423356666666666666666555544 556666666666666665433320
Q ss_pred -chhhcccccccchhcccccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCchHhhhcCCCCC
Q 038858 181 -PLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLE 259 (740)
Q Consensus 181 -~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 259 (740)
+..+++.+|.+.+.... ....++|++|++ .++.+.+..|..+..+++|+.|++++|.+.+..|.. .+++|+
T Consensus 201 ~L~~L~Ls~n~l~~~~~~----l~~l~~L~~L~L-s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~ 272 (768)
T 3rgz_A 201 NLEFLDVSSNNFSTGIPF----LGDCSALQHLDI-SGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQ 272 (768)
T ss_dssp TCCEEECCSSCCCSCCCB----CTTCCSCCEEEC-CSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCC
T ss_pred cCCEEECcCCcCCCCCcc----cccCCCCCEEEC-cCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCC
Confidence 00111111111111100 123334555555 333444444445555555555555555554444432 445555
Q ss_pred EEeccCCcccCCCCCCCCCC-CCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCcc-ccCCCCCcEEEee
Q 038858 260 SLSLVNDSLAGPFRLPIHSH-KSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSS-FGNMNFLQILDLS 337 (740)
Q Consensus 260 ~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~L~ 337 (740)
+|++++|.+++..+..+... ++|++|++++|.+.+.+|..+.. +++|++|++++|.+++.+|.. +..+++|++|+++
T Consensus 273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls 351 (768)
T 3rgz_A 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS-CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351 (768)
T ss_dssp EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG-CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECC
T ss_pred EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc-CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCc
Confidence 55555555544444444332 55555555555554444444433 455555555555554444433 4555555555555
Q ss_pred cccCCCccChhhhhcCc-cCcEEEcCCccccccCCcCCCC--CCCCCeEEccCCcccccCccccccCCCCCeEEccCCcC
Q 038858 338 NNHLTGEIPEHLAIGCV-NLEILVLSNNNLEGHMFSKNFN--LTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNL 414 (740)
Q Consensus 338 ~n~l~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i 414 (740)
+|.+++.+|..+. .++ +|++|++++|.+.+..+..+.. +++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus 352 ~n~l~~~~p~~l~-~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 430 (768)
T 3rgz_A 352 FNEFSGELPESLT-NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430 (768)
T ss_dssp SSEEEECCCTTHH-HHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEE
T ss_pred CCccCccccHHHH-hhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcc
Confidence 5555444444443 222 4555555555554444443333 44555555555555555555555555555555555555
Q ss_pred cccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEc
Q 038858 415 SGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLIL 494 (740)
Q Consensus 415 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L 494 (740)
++..|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|+ +++.+|..+..+++|++|++
T Consensus 431 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~-------------l~~~~p~~l~~l~~L~~L~L 497 (768)
T 3rgz_A 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND-------------LTGEIPSGLSNCTNLNWISL 497 (768)
T ss_dssp ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-------------CCSCCCGGGGGCTTCCEEEC
T ss_pred cCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc-------------ccCcCCHHHhcCCCCCEEEc
Confidence 54555555555555555555555555555555555555555555554 45677888999999999999
Q ss_pred ccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcC------------
Q 038858 495 AHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQ------------ 562 (740)
Q Consensus 495 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------------ 562 (740)
++|++++.+|..++.+++|++|++++|++.+.+|..+.. +++|+.|++++|.+++.+|..
T Consensus 498 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~--------l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~ 569 (768)
T 3rgz_A 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD--------CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG--------CTTCCEEECCSSEEESBCCGGGGTTTTCBCCST
T ss_pred cCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcC--------CCCCCEEECCCCccCCcCChHHhcccchhhhhc
Confidence 999999999999999999999999999999999988877 679999999999998766643
Q ss_pred ----------------------------------------------------------ccCCCcCcEEeCcCCcCCCccc
Q 038858 563 ----------------------------------------------------------IGNLTRIQTLNLSHNNLTGTIL 584 (740)
Q Consensus 563 ----------------------------------------------------------~~~l~~L~~L~L~~n~l~~~~~ 584 (740)
+..+++|+.|+|++|++++.+|
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip 649 (768)
T 3rgz_A 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649 (768)
T ss_dssp TCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC
T ss_pred cccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC
Confidence 3446789999999999999999
Q ss_pred hhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCCCCCC
Q 038858 585 STFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLP 656 (740)
Q Consensus 585 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~ 656 (740)
..|+.+++|+.|+|++|++++.+|..+..+++|+.||+++|+++|.+|..+..++.|+.+++++|+....-|
T Consensus 650 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred HHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999998765433
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8.9e-61 Score=548.87 Aligned_cols=592 Identities=20% Similarity=0.213 Sum_probs=471.2
Q ss_pred CEEeCCCCCCCCCCCCCccccCCCCCCcEEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCCCCEE
Q 038858 8 NTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYL 87 (740)
Q Consensus 8 ~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 87 (740)
+.+|.++++++.+ | ..+. +++++|++++|.+.+..+..+.. +++|++|++++|.+.+.. +..+.++++|++|
T Consensus 7 ~~~~cs~~~L~~i-p---~~~~--~~l~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L 78 (680)
T 1ziw_A 7 EVADCSHLKLTQV-P---DDLP--TNITVLNLTHNQLRRLPAANFTR-YSQLTSLDVGFNTISKLE-PELCQKLPMLKVL 78 (680)
T ss_dssp SEEECCSSCCSSC-C---SCSC--TTCSEEECCSSCCCCCCGGGGGG-GTTCSEEECCSSCCCCCC-TTHHHHCTTCCEE
T ss_pred CeeECCCCCcccc-c---cccC--CCCcEEECCCCCCCCcCHHHHhC-CCcCcEEECCCCccCccC-HHHHhcccCcCEE
Confidence 5678888887765 3 2232 78888999888888777777777 888999999888887443 3457888889999
Q ss_pred ecCCCccccCccchH-HHhccCCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCccccccCccccCCCCCCEE
Q 038858 88 DMNTACIALNASFLQ-IIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTL 166 (740)
Q Consensus 88 ~L~~~~i~~~~~~~~-~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L 166 (740)
++++|.+ . .++. .+.. +++|++|++++|.+. .+++..|+++++|++|++++|.+.+..+..++++++|++|
T Consensus 79 ~L~~n~l--~-~l~~~~~~~-l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 150 (680)
T 1ziw_A 79 NLQHNEL--S-QLSDKTFAF-CTNLTELHLMSNSIQ----KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL 150 (680)
T ss_dssp ECCSSCC--C-CCCTTTTTT-CTTCSEEECCSSCCC----CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEE
T ss_pred ECCCCcc--C-ccChhhhcc-CCCCCEEECCCCccC----ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEE
Confidence 9988844 3 3333 4555 888999999888876 4555478888899999999998887777788888899999
Q ss_pred EccCCcCccccCCCchhhcccccccchhcccccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCccc
Q 038858 167 DVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGE 246 (740)
Q Consensus 167 ~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 246 (740)
++++|.+++..+..+ ......+|++|++ ..+.+.+..+..+..+.+|+.++++++.+.+.
T Consensus 151 ~L~~n~l~~~~~~~~-------------------~~~~~~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~ 210 (680)
T 1ziw_A 151 LLSNNKIQALKSEEL-------------------DIFANSSLKKLEL-SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPS 210 (680)
T ss_dssp ECCSSCCCCBCHHHH-------------------GGGTTCEESEEEC-TTCCCCCBCTTGGGGSSEECEEECTTCCCHHH
T ss_pred EccCCcccccCHHHh-------------------hccccccccEEEC-CCCcccccChhhhhhhhhhhhhhccccccChh
Confidence 999888875433211 0112347888888 55566666777788888999999998887644
Q ss_pred CchHhh--hcCCCCCEEeccCCcccCCCCCCCCCCCC--cCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCC
Q 038858 247 FPNWLL--ENNTKLESLSLVNDSLAGPFRLPIHSHKS--LRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIP 322 (740)
Q Consensus 247 ~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~l~~~~~--L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 322 (740)
....+. -..++|++|++++|.+.+..+..+..++. |++|++++|.+.+..+..+. .+++|++|++++|.+++..|
T Consensus 211 ~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~ 289 (680)
T 1ziw_A 211 LTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHLFS 289 (680)
T ss_dssp HHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSCCBSEECT
T ss_pred hHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccccc-CcccccEeeCCCCccCccCh
Confidence 333221 13478999999999988877777777654 99999999998855444444 48899999999999998888
Q ss_pred ccccCCCCCcEEEeecccCCC--------ccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccc--
Q 038858 323 SSFGNMNFLQILDLSNNHLTG--------EIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVE-- 392 (740)
Q Consensus 323 ~~~~~l~~L~~L~L~~n~l~~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-- 392 (740)
..|.++++|++|++++|...+ .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus 290 ~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~ 369 (680)
T 1ziw_A 290 HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369 (680)
T ss_dssp TTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCE
T ss_pred hhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhh
Confidence 899999999999998875443 2223345578999999999999998888888899999999999987532
Q ss_pred cCcccccc--CCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCC-ccccCCCCccEEeccCCcCCCCCCCC
Q 038858 393 EIPQSLSK--CLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIP-VAFCQLDSLQILGISDNNISGSLPSY 469 (740)
Q Consensus 393 ~~~~~~~~--l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~ 469 (740)
.....|.. .++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+ ..|.++++|++|++++|++.+
T Consensus 370 l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~----- 444 (680)
T 1ziw_A 370 LTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ----- 444 (680)
T ss_dssp ECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEE-----
T ss_pred cchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcce-----
Confidence 22233433 3589999999999988888889999999999999999876444 688899999999999998763
Q ss_pred CCCCcCCccCchhhhccccCcEEEccccccc--ccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccce
Q 038858 470 LSYNRLNGSIPDRIDGLLRLSHLILAHNNLE--GEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSG 547 (740)
Q Consensus 470 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~ 547 (740)
..+..|..+++|+.|++++|.+. +..|..+..+++|+.|++++|.+++..+..|.. +++|+.
T Consensus 445 --------~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~--------l~~L~~ 508 (680)
T 1ziw_A 445 --------LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG--------LEKLEI 508 (680)
T ss_dssp --------CCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT--------CTTCCE
T ss_pred --------eChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc--------ccccCE
Confidence 34556778899999999999886 467888999999999999999999888777766 679999
Q ss_pred EEccCccccccCC--------cCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCE
Q 038858 548 IDLSCNKLIGDIP--------PQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVV 619 (740)
Q Consensus 548 L~l~~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 619 (740)
|++++|.+++..+ ..|.++++|++|+|++|+++...+..|.++++|++|++++|++++..+..|..+++|+.
T Consensus 509 L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 588 (680)
T 1ziw_A 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588 (680)
T ss_dssp EECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred EeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCE
Confidence 9999999986422 24788999999999999999777778999999999999999999777777899999999
Q ss_pred EEccCCcccccCCCCCc-cccCCCccccCCCCCCCCCCC
Q 038858 620 FSVAYNNLSGKIPEMTT-QFATFNESNYKGNPFLCGLPL 657 (740)
Q Consensus 620 L~l~~N~l~~~~~~~~~-~~~~l~~~~~~~Np~~C~~~~ 657 (740)
|++++|++++..|..+. .+++++.+++++|||.|+|+.
T Consensus 589 L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 589 LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp EECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred EECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 99999999998887666 688999999999999999984
No 4
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.4e-57 Score=527.60 Aligned_cols=551 Identities=20% Similarity=0.224 Sum_probs=425.6
Q ss_pred cEEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCCCCEEecCCCccccCccc-hHHHhccCCCCcE
Q 038858 35 EYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASF-LQIIGASMPFLKY 113 (740)
Q Consensus 35 ~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~-~~~l~~~l~~L~~ 113 (740)
+..+.+++.++.. |. + .++|++|++++|.+++. ++..|.++++|++|++++| .....+ +..+.. +++|++
T Consensus 7 ~~~dcs~~~L~~v-P~-l---p~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n--~~~~~i~~~~f~~-L~~L~~ 77 (844)
T 3j0a_A 7 RIAFYRFCNLTQV-PQ-V---LNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQ--YTPLTIDKEAFRN-LPNLRI 77 (844)
T ss_dssp EEEEESCCCSSCC-CS-S---CTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTT--CCCCEECTTTTSS-CTTCCE
T ss_pred eEEEccCCCCCCC-CC-C---CCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCC--CCccccCHHHhcC-CCCCCE
Confidence 3566667776654 33 2 56788888888888744 3445888888888888887 333444 344444 778888
Q ss_pred EEccCcccccCCCCCCccccCCCCCCCEEEccCCccccccCcc--ccCCCCCCEEEccCCcCccccCCCchhhccccccc
Q 038858 114 LSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWC--LANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEI 191 (740)
Q Consensus 114 L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 191 (740)
|+|++|.+. .+.+..|.++++|++|+|++|.+.+..+.. ++++++|++|++++|.+.+..
T Consensus 78 L~Ls~N~l~----~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~-------------- 139 (844)
T 3j0a_A 78 LDLGSSKIY----FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY-------------- 139 (844)
T ss_dssp EECTTCCCC----EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC--------------
T ss_pred EECCCCcCc----ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc--------------
Confidence 888877776 333337777888888888888777655443 777788888888877765322
Q ss_pred chhcccccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCchHhhhcC--CCCCEEeccCCccc
Q 038858 192 NAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENN--TKLESLSLVNDSLA 269 (740)
Q Consensus 192 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~ 269 (740)
.+..++.+++|+.|++++|.+.+..+..+ ..+ ++|+.|++++|.+.
T Consensus 140 -------------------------------~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l-~~l~~~~L~~L~L~~n~l~ 187 (844)
T 3j0a_A 140 -------------------------------LHPSFGKLNSLKSIDFSSNQIFLVCEHEL-EPLQGKTLSFFSLAANSLY 187 (844)
T ss_dssp -------------------------------CCGGGGTCSSCCEEEEESSCCCCCCSGGG-HHHHHCSSCCCEECCSBSC
T ss_pred -------------------------------cchhHhhCCCCCEEECCCCcCCeeCHHHc-ccccCCccceEECCCCccc
Confidence 22457788899999999999887777765 555 88999999999988
Q ss_pred CCCCCCCCCCCC------cCEEeccCCcCcccCChhHhhcC--CCCcEEEccCC---------cCcccCCccccCC--CC
Q 038858 270 GPFRLPIHSHKS------LRLLDVSNNNFQGRIPAEIGDIL--PSLSSFNISMN---------ALDGSIPSSFGNM--NF 330 (740)
Q Consensus 270 ~~~~~~l~~~~~------L~~L~l~~n~l~~~~~~~~~~~~--~~L~~L~l~~n---------~~~~~~~~~~~~l--~~ 330 (740)
+..+..+..+++ |++|++++|.+.+..+..+.... ++++.|.+..+ .+.+.....|.++ ++
T Consensus 188 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~ 267 (844)
T 3j0a_A 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS 267 (844)
T ss_dssp CCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSC
T ss_pred cccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCC
Confidence 877666665554 99999999988877777666532 46788887733 3333344455554 78
Q ss_pred CcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEcc
Q 038858 331 LQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLN 410 (740)
Q Consensus 331 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 410 (740)
|+.|++++|.+. .++...+..+++|+.|++++|.+.+..+..+..+++|++|++++|++.+..+..|..+++|++|+++
T Consensus 268 L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 346 (844)
T 3j0a_A 268 VRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346 (844)
T ss_dssp CCEEECTTCCCC-EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred ccEEECCCCccc-ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence 999999999998 4444555689999999999999998888888899999999999999988888889999999999999
Q ss_pred CCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCc
Q 038858 411 NNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLS 490 (740)
Q Consensus 411 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~ 490 (740)
+|.+....+..+..+++|+.|++++|.+++. ..+++|+.|++++|+++ .+|.. ..+++
T Consensus 347 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~--------------~l~~~---~~~l~ 404 (844)
T 3j0a_A 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV--------------TLPKI---NLTAN 404 (844)
T ss_dssp SCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC--------------CCCCC---CTTCC
T ss_pred CCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc--------------ccccc---ccccc
Confidence 9999877777889999999999999998743 23788999999999987 33322 45789
Q ss_pred EEEccccccccccc-ccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCcccc-----ccCCcCcc
Q 038858 491 HLILAHNNLEGEVP-VQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLI-----GDIPPQIG 564 (740)
Q Consensus 491 ~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~ 564 (740)
.|++++|.+++... ..+..+++|+.|++++|++++..+..... .+++|+.|++++|.+. +..+..|.
T Consensus 405 ~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 477 (844)
T 3j0a_A 405 LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS-------ENPSLEQLFLGENMLQLAWETELCWDVFE 477 (844)
T ss_dssp EEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSC-------SCTTCCBCEEESCCCSSSCCSCCCSSCSS
T ss_pred eeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccc-------cCCccccccCCCCccccccccccchhhhc
Confidence 99999999986432 34668999999999999998765543221 1578999999999997 34456789
Q ss_pred CCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCcc
Q 038858 565 NLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNES 644 (740)
Q Consensus 565 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~ 644 (740)
.+++|+.|+|++|++++..+..|..+++|++|+|++|++++..|..+. ++|+.|++++|++++..|..+ .+++.+
T Consensus 478 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l 552 (844)
T 3j0a_A 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVL 552 (844)
T ss_dssp CBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEE
T ss_pred CcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEE
Confidence 999999999999999999999999999999999999999987776665 899999999999999998764 578899
Q ss_pred ccCCCCCCCCCCCC--------------------CCCCCCcccccCCCCCCCCcc
Q 038858 645 NYKGNPFLCGLPLP--------------------ICRSPVTMLEASTSNEGDDNL 679 (740)
Q Consensus 645 ~~~~Np~~C~~~~~--------------------~c~~~~~~~~~~~~~~~~~~~ 679 (740)
++++|||.|+|+.. .|..|....+..........|
T Consensus 553 ~l~~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~C 607 (844)
T 3j0a_A 553 DITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGC 607 (844)
T ss_dssp EEEEECCCCSSSCCSHHHHHHHTTTTTCCCGGGCCCSSCSSSCSCCTTTCCCCCC
T ss_pred EecCCCcccccccHHHHHHHHhcCcccccccccCccCCchhhCCCccccCccccC
Confidence 99999999999741 577777766665554444444
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.7e-56 Score=510.58 Aligned_cols=580 Identities=21% Similarity=0.205 Sum_probs=481.8
Q ss_pred CCCCEEeCCCCCCCCCCCCCccccCCCCCCcEEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCCC
Q 038858 5 SSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSL 84 (740)
Q Consensus 5 ~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L 84 (740)
+++++|+|++|.++++.+ ..++++++|++|++++|.+.+..+..+.. +++|++|++++|.+. .+++..|.++++|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~-~l~~~~~~~l~~L 99 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPA---ANFTRYSQLTSLDVGFNTISKLEPELCQK-LPMLKVLNLQHNELS-QLSDKTFAFCTNL 99 (680)
T ss_dssp TTCSEEECCSSCCCCCCG---GGGGGGTTCSEEECCSSCCCCCCTTHHHH-CTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred CCCcEEECCCCCCCCcCH---HHHhCCCcCcEEECCCCccCccCHHHHhc-ccCcCEEECCCCccC-ccChhhhccCCCC
Confidence 589999999999999877 78999999999999999999988888888 999999999999998 5666679999999
Q ss_pred CEEecCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCccccccCcccc--CCCC
Q 038858 85 EYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLA--NMTS 162 (740)
Q Consensus 85 ~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~--~l~~ 162 (740)
++|++++|.+ .+..+..+.. +++|++|++++|.+. +. +...+.++++|++|++++|.+++..+..++ .+++
T Consensus 100 ~~L~L~~n~l--~~~~~~~~~~-l~~L~~L~Ls~n~l~---~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 172 (680)
T 1ziw_A 100 TELHLMSNSI--QKIKNNPFVK-QKNLITLDLSHNGLS---ST-KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS 172 (680)
T ss_dssp SEEECCSSCC--CCCCSCTTTT-CTTCCEEECCSSCCS---CC-CCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCE
T ss_pred CEEECCCCcc--CccChhHccc-cCCCCEEECCCCccc---cc-CchhhcccccCCEEEccCCcccccCHHHhhcccccc
Confidence 9999999954 4444455666 999999999999887 43 443789999999999999999877666554 5689
Q ss_pred CCEEEccCCcCccccCCCchhhcccccccchhcccccCCCCCCccccEEEccCCCCCCCCCchhhc---CCCCCCEEEcc
Q 038858 163 LRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLH---HQNKLEDVDLS 239 (740)
Q Consensus 163 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~L~~L~l~ 239 (740)
|++|++++|.+.+..|..+ ....+|+.|++ .+..........+. ..++|+.|+++
T Consensus 173 L~~L~L~~n~l~~~~~~~~---------------------~~l~~L~~L~l-~~~~l~~~~~~~~~~~l~~~~L~~L~L~ 230 (680)
T 1ziw_A 173 LKKLELSSNQIKEFSPGCF---------------------HAIGRLFGLFL-NNVQLGPSLTEKLCLELANTSIRNLSLS 230 (680)
T ss_dssp ESEEECTTCCCCCBCTTGG---------------------GGSSEECEEEC-TTCCCHHHHHHHHHHHHTTSCCCEEECT
T ss_pred ccEEECCCCcccccChhhh---------------------hhhhhhhhhhc-cccccChhhHHHHHHHhhhccccEEEcc
Confidence 9999999999986655432 33447888888 34333322211111 34789999999
Q ss_pred CCCCcccCchHhhhcCC--CCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcC
Q 038858 240 HIKMNGEFPNWLLENNT--KLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNAL 317 (740)
Q Consensus 240 ~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~ 317 (740)
+|.+.+..|..+ ..++ +|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+.. +++|++|++++|..
T Consensus 231 ~n~l~~~~~~~~-~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~~~~ 308 (680)
T 1ziw_A 231 NSQLSTTSNTTF-LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG-LFNVRYLNLKRSFT 308 (680)
T ss_dssp TSCCCEECTTTT-GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTT-CTTCCEEECTTCBC
T ss_pred CCcccccChhHh-hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcC-CCCccEEeccchhh
Confidence 999998777765 5554 4999999999999888888999999999999999998665655554 89999999998754
Q ss_pred cc-----cCC----ccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCcccc--ccCCcCCCC--CCCCCeEE
Q 038858 318 DG-----SIP----SSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLE--GHMFSKNFN--LTKLSWLL 384 (740)
Q Consensus 318 ~~-----~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~--l~~L~~L~ 384 (740)
.+ .+| ..|..+++|++|++++|.+. .++...+.++++|++|++++|.+. ......+.. .++|+.|+
T Consensus 309 ~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~ 387 (680)
T 1ziw_A 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP-GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 387 (680)
T ss_dssp CC------CCEECTTTTTTCTTCCEEECCSCCBC-CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEE
T ss_pred hcccccccccccChhhcccCCCCCEEECCCCccC-CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEE
Confidence 42 223 37889999999999999998 455555668999999999999743 233333433 36899999
Q ss_pred ccCCcccccCccccccCCCCCeEEccCCcCcccCC-CCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCC
Q 038858 385 LEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIP-QWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNIS 463 (740)
Q Consensus 385 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 463 (740)
+++|++.+..+..+..+++|++|++++|.+.+.++ ..+.++++|++|++++|++.+..+..|..+++|+.|++++|.+.
T Consensus 388 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 467 (680)
T 1ziw_A 388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467 (680)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCB
T ss_pred CCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccc
Confidence 99999999989999999999999999999986555 67889999999999999999888899999999999999999875
Q ss_pred CCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhcc
Q 038858 464 GSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLS 543 (740)
Q Consensus 464 ~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~ 543 (740)
+. +..|..+..+++|+.|++++|.+++..+..+.++++|+.|++++|++++..+..++......+..++
T Consensus 468 ~~-----------~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~ 536 (680)
T 1ziw_A 468 NV-----------DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS 536 (680)
T ss_dssp CT-----------TCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCT
T ss_pred cc-----------ccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCC
Confidence 21 2567788999999999999999998888889999999999999999987655444332223344578
Q ss_pred ccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhh-cCCCCCEEEc
Q 038858 544 LLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLV-ELNALVVFSV 622 (740)
Q Consensus 544 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~l 622 (740)
+|+.|++++|+++...+..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++++..|..+. .+++|+.+++
T Consensus 537 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l 616 (680)
T 1ziw_A 537 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM 616 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEEC
T ss_pred CCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEc
Confidence 999999999999966666899999999999999999988888899999999999999999988888887 7899999999
Q ss_pred cCCcccccCC
Q 038858 623 AYNNLSGKIP 632 (740)
Q Consensus 623 ~~N~l~~~~~ 632 (740)
++|++.+..+
T Consensus 617 ~~N~~~c~c~ 626 (680)
T 1ziw_A 617 RFNPFDCTCE 626 (680)
T ss_dssp TTCCCCBCCC
T ss_pred cCCCcccCCc
Confidence 9999997654
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.1e-54 Score=489.33 Aligned_cols=534 Identities=20% Similarity=0.213 Sum_probs=376.2
Q ss_pred EEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCCCCEEecCCCccccCccchHHHhccCCCCcEEE
Q 038858 36 YLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLS 115 (740)
Q Consensus 36 ~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~ 115 (740)
.++.++..+.. +|..+. +++++|++++|.+++ +++..|.++++|++|++++| .+.+..+..+.. +++|++|+
T Consensus 16 ~~~c~~~~l~~-iP~~l~---~~l~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~-l~~L~~L~ 87 (606)
T 3t6q_A 16 TYNCENLGLNE-IPGTLP---NSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRC--QIYWIHEDTFQS-QHRLDTLV 87 (606)
T ss_dssp EEECTTSCCSS-CCTTSC---TTCCEEECTTCCCSE-ECTTTSTTCTTCSEEECTTC--CCCEECTTTTTT-CTTCCEEE
T ss_pred eEECCCCCccc-CcCCCC---CcCcEEEccCCccCc-CChhHhccCccceEEECCCC--ccceeChhhccC-ccccCeee
Confidence 45555555442 233332 356777777777663 33345677777777777777 333444444555 77777777
Q ss_pred ccCcccccCCCCCCccccCCCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCccccCCCchhhcccccccchhc
Q 038858 116 LSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEI 195 (740)
Q Consensus 116 Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~ 195 (740)
+++|.+. .+++..++++++|++|++++|.+++..+..++++++|++|++++|.+.+...
T Consensus 88 Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~----------------- 146 (606)
T 3t6q_A 88 LTANPLI----FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL----------------- 146 (606)
T ss_dssp CTTCCCS----EECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCC-----------------
T ss_pred CCCCccc----ccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCc-----------------
Confidence 7776665 3333367777777777777777776556667777777777777777653111
Q ss_pred ccccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCchHhhhcCCCCC--EEeccCCcccCCCC
Q 038858 196 TESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLE--SLSLVNDSLAGPFR 273 (740)
Q Consensus 196 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~--~L~l~~~~~~~~~~ 273 (740)
+.. ..+++|+.|++++|.+++..+..+ +.+++|+ +|++++|.+.+..+
T Consensus 147 ----------------------------~~~-~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~l~L~l~~n~l~~~~~ 196 (606)
T 3t6q_A 147 ----------------------------PKG-FPTEKLKVLDFQNNAIHYLSKEDM-SSLQQATNLSLNLNGNDIAGIEP 196 (606)
T ss_dssp ----------------------------CTT-CCCTTCCEEECCSSCCCEECHHHH-HTTTTCCSEEEECTTCCCCEECT
T ss_pred ----------------------------ccc-cCCcccCEEEcccCcccccChhhh-hhhcccceeEEecCCCccCccCh
Confidence 111 125567777777777765545443 6677777 67777777766555
Q ss_pred CCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCc-----ccCCccccCCC--CCcEEEeecccCCCccC
Q 038858 274 LPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALD-----GSIPSSFGNMN--FLQILDLSNNHLTGEIP 346 (740)
Q Consensus 274 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~-----~~~~~~~~~l~--~L~~L~L~~n~l~~~~~ 346 (740)
..+.. .+|++|++++|.. ++..+.. +.+++...+....+. ...+..|.++. +|+.|++++|.++ .++
T Consensus 197 ~~~~~-~~L~~L~l~~~~~---~~~~~~~-l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~-~~~ 270 (606)
T 3t6q_A 197 GAFDS-AVFQSLNFGGTQN---LLVIFKG-LKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF-NIS 270 (606)
T ss_dssp TTTTT-CEEEEEECTTCSC---HHHHHHH-TTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS-SCC
T ss_pred hHhhh-ccccccccCCchh---HHHHhhh-ccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC-ccC
Confidence 44433 5677777777652 2222222 344333332222111 12223333333 6777888888777 555
Q ss_pred hhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCC-CCCCCc
Q 038858 347 EHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIP-QWLGNL 425 (740)
Q Consensus 347 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~l~~l 425 (740)
...+..+++|++|++++|.++. .+..+..+++|++|++++|++.+..+..+..+++|++|++++|.+.+.++ ..+..+
T Consensus 271 ~~~~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 349 (606)
T 3t6q_A 271 SNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349 (606)
T ss_dssp TTTTTTCTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred HHHhccccCCCEEeccCCccCC-CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence 5555577788888888887774 34556777888888888888877777778888888888888887764444 347778
Q ss_pred cCcceeeccCCcccCCC--CccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccc
Q 038858 426 TGLQYIIIPENHLEGPI--PVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEV 503 (740)
Q Consensus 426 ~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 503 (740)
++|++|++++|.+.+.. +..+..+++|++|++++|++.+ ..|..+..+++|++|++++|.+.+..
T Consensus 350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~l~~L~~L~l~~n~l~~~~ 416 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS-------------LKTEAFKECPQLELLDLAFTRLKVKD 416 (606)
T ss_dssp TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEE-------------ECTTTTTTCTTCSEEECTTCCEECCT
T ss_pred CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCc-------------CCHHHhcCCccCCeEECCCCcCCCcc
Confidence 88888888888887654 5677788888888888887652 34556777888888888888887665
Q ss_pred cc-cccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCcccccc---CCcCccCCCcCcEEeCcCCcC
Q 038858 504 PV-QLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGD---IPPQIGNLTRIQTLNLSHNNL 579 (740)
Q Consensus 504 ~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l 579 (740)
+. .+..+++|++|++++|.+.+..|..+.. +++|++|++++|.+.+. .+..+..+++|++|++++|++
T Consensus 417 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l 488 (606)
T 3t6q_A 417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDG--------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488 (606)
T ss_dssp TCCTTTTCTTCCEEECTTCCCBTTCTTTTTT--------CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC
T ss_pred cchhhhCcccCCEEECCCCccCCcCHHHHhC--------CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc
Confidence 54 4788888888888888888777777766 56888889988888752 335688899999999999999
Q ss_pred CCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCCCCCCC
Q 038858 580 TGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPL 657 (740)
Q Consensus 580 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~ 657 (740)
++..|..|..+++|++|++++|++++..|..+..++.| +|++++|++++..|..+..+++++.+++++|||.|+|+.
T Consensus 489 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred CccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 99889999999999999999999999999999999999 999999999999898888899999999999999999973
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.8e-53 Score=481.75 Aligned_cols=533 Identities=18% Similarity=0.185 Sum_probs=423.9
Q ss_pred CcEEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCCCCEEecCCCccccCccchHHHhccCCCCcE
Q 038858 34 LEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKY 113 (740)
Q Consensus 34 L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~ 113 (740)
-++++.+++.++.. |..+ .+++++|++++|.+. .+++..|.++++|++|++++|. +.+..+..+.. +++|++
T Consensus 13 ~~~~~c~~~~l~~i-p~~~---~~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~--l~~i~~~~~~~-l~~L~~ 84 (606)
T 3vq2_A 13 NITYQCMDQKLSKV-PDDI---PSSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCE--IETIEDKAWHG-LHHLSN 84 (606)
T ss_dssp TTEEECTTSCCSSC-CTTS---CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCC--CCEECTTTTTT-CTTCCE
T ss_pred CCceEccCCCcccC-CCCC---CCCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCc--ccccCHHHhhc-hhhcCE
Confidence 35677777776643 3333 357888888888887 3444458888888888888883 34444445555 788888
Q ss_pred EEccCcccccCCCCCCccccCCCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCccccCCCchhhcccccccch
Q 038858 114 LSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINA 193 (740)
Q Consensus 114 L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~ 193 (740)
|++++|.+. .+++..|+++++|++|++++|.+.+..+..++++++|++|++++|.+.+
T Consensus 85 L~Ls~n~l~----~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------ 142 (606)
T 3vq2_A 85 LILTGNPIQ----SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS------------------ 142 (606)
T ss_dssp EECTTCCCC----CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCC------------------
T ss_pred eECCCCccc----ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccc------------------
Confidence 888887776 3433377788888888888888876666677788888888888877652
Q ss_pred hcccccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCchHhhhcCCC----CCEEeccCCccc
Q 038858 194 EITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTK----LESLSLVNDSLA 269 (740)
Q Consensus 194 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~----L~~L~l~~~~~~ 269 (740)
..+|..++.+++|+.|++++|.+++..+..+ +.+++ +++|++++|.+.
T Consensus 143 ---------------------------~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~~l~~L~l~~n~l~ 194 (606)
T 3vq2_A 143 ---------------------------CKLPAYFSNLTNLVHVDLSYNYIQTITVNDL-QFLRENPQVNLSLDMSLNPID 194 (606)
T ss_dssp ---------------------------CCCCGGGGTCTTCCEEECCSSCCCEECTTTT-HHHHHCTTCCCEEECTTCCCC
T ss_pred ---------------------------eechHhHhhcCCCCEEEccCCcceecChhhh-hhhhccccccceeeccCCCcc
Confidence 1345678888999999999999987666554 44444 458999999998
Q ss_pred CCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcc------cCCccccCCC--CCcEEEe-eccc
Q 038858 270 GPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDG------SIPSSFGNMN--FLQILDL-SNNH 340 (740)
Q Consensus 270 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~------~~~~~~~~l~--~L~~L~L-~~n~ 340 (740)
+..+..+... +|++|++++|.+.+.........++.++.+++..+.+.. ..+..+.++. .++.+++ ..+.
T Consensus 195 ~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~ 273 (606)
T 3vq2_A 195 FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTND 273 (606)
T ss_dssp EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTT
T ss_pred eeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccc
Confidence 7766666554 899999999988754444445558899988886554432 1122233332 4566777 6677
Q ss_pred CCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCC
Q 038858 341 LTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQ 420 (740)
Q Consensus 341 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~ 420 (740)
+.+.+|. +..+++|+.|++++|.+.... .+..+++|++|++++|.+ +.+| .+ .+++|++|++++|...+..
T Consensus 274 ~~~~~~~--~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~-- 344 (606)
T 3vq2_A 274 FSDDIVK--FHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF-- 344 (606)
T ss_dssp CCGGGGS--CGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--
T ss_pred ccccccc--cccCCCCCEEEecCccchhhh--hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--
Confidence 7766665 557899999999999997654 778899999999999999 5666 45 8999999999999655333
Q ss_pred CCCCccCcceeeccCCcccCC--CCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEccccc
Q 038858 421 WLGNLTGLQYIIIPENHLEGP--IPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNN 498 (740)
Q Consensus 421 ~l~~l~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 498 (740)
.+..+++|++|++++|.+++. .+..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.
T Consensus 345 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~--------------~~~~~~~~l~~L~~L~l~~n~ 410 (606)
T 3vq2_A 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI--------------IMSANFMGLEELQHLDFQHST 410 (606)
T ss_dssp CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE--------------EECCCCTTCTTCCEEECTTSE
T ss_pred hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc--------------cchhhccCCCCCCeeECCCCc
Confidence 567899999999999999866 3778899999999999999987 455678889999999999999
Q ss_pred cccccc-ccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccc-cCCcCccCCCcCcEEeCcC
Q 038858 499 LEGEVP-VQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIG-DIPPQIGNLTRIQTLNLSH 576 (740)
Q Consensus 499 l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~ 576 (740)
+.+..+ ..+..+++|+.|++++|.+.+..|..+.. +++|+.|++++|.+.+ ..|..+..+++|++|+|++
T Consensus 411 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 482 (606)
T 3vq2_A 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG--------LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482 (606)
T ss_dssp EESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT--------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred cCCccChhhhhccccCCEEECcCCCCCccchhhhcC--------CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCC
Confidence 998877 68999999999999999999988888877 6799999999999997 4788999999999999999
Q ss_pred CcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCcccc-CCCccccCCCCCCCCC
Q 038858 577 NNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFA-TFNESNYKGNPFLCGL 655 (740)
Q Consensus 577 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~l~~~~~~~Np~~C~~ 655 (740)
|++++..|..|..+++|++|++++|++++..|..+..+++|++|++++|+++.. |..+..++ +++.+++++|||.|+|
T Consensus 483 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-p~~~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS-KGILQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCE-ESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred CcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCccc-CHhHhhhcccCcEEEccCCCcccCC
Confidence 999999999999999999999999999999999999999999999999999954 54477776 5999999999999999
Q ss_pred CC
Q 038858 656 PL 657 (740)
Q Consensus 656 ~~ 657 (740)
+.
T Consensus 562 ~~ 563 (606)
T 3vq2_A 562 EH 563 (606)
T ss_dssp TT
T ss_pred cc
Confidence 85
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.6e-52 Score=473.92 Aligned_cols=535 Identities=21% Similarity=0.199 Sum_probs=382.9
Q ss_pred CEEeCCCCCCCCCCCCCccccCCCCCCcEEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCCCCEE
Q 038858 8 NTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYL 87 (740)
Q Consensus 8 ~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 87 (740)
+.++.++..++.+ | ..+. +++++|++++|.+.+..+..+.. +++|++|++++|.+.+. .+..|.++++|++|
T Consensus 15 ~~~~c~~~~l~~i-P---~~l~--~~l~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L 86 (606)
T 3t6q_A 15 KTYNCENLGLNEI-P---GTLP--NSTECLEFSFNVLPTIQNTTFSR-LINLTFLDLTRCQIYWI-HEDTFQSQHRLDTL 86 (606)
T ss_dssp TEEECTTSCCSSC-C---TTSC--TTCCEEECTTCCCSEECTTTSTT-CTTCSEEECTTCCCCEE-CTTTTTTCTTCCEE
T ss_pred ceEECCCCCcccC-c---CCCC--CcCcEEEccCCccCcCChhHhcc-CccceEEECCCCcccee-ChhhccCccccCee
Confidence 3455555555544 2 1222 35677777777777666666666 77777777777776633 33447777777777
Q ss_pred ecCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCccccccCccccCCCCCCEEE
Q 038858 88 DMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLD 167 (740)
Q Consensus 88 ~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ 167 (740)
++++| .+.+..+..+.. +++|++|++++|.+. .+++..+.++++|++|++++|.+.+.....+..+++|++|+
T Consensus 87 ~Ls~n--~l~~~~~~~~~~-l~~L~~L~L~~n~i~----~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 159 (606)
T 3t6q_A 87 VLTAN--PLIFMAETALSG-PKALKHLFFIQTGIS----SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD 159 (606)
T ss_dssp ECTTC--CCSEECTTTTSS-CTTCCEEECTTSCCS----CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEE
T ss_pred eCCCC--cccccChhhhcc-cccccEeeccccCcc----cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEE
Confidence 77777 334444445555 777777777777665 33333567777777777777777653333444477777777
Q ss_pred ccCCcCccccCCCchhhcccccccchhcccccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCC--EEEccCCCCcc
Q 038858 168 VSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLE--DVDLSHIKMNG 245 (740)
Q Consensus 168 L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~--~L~l~~~~~~~ 245 (740)
+++|.+++..+ ..++.+++|+ .|++++|.+.+
T Consensus 160 L~~n~l~~~~~----------------------------------------------~~~~~l~~L~~l~L~l~~n~l~~ 193 (606)
T 3t6q_A 160 FQNNAIHYLSK----------------------------------------------EDMSSLQQATNLSLNLNGNDIAG 193 (606)
T ss_dssp CCSSCCCEECH----------------------------------------------HHHHTTTTCCSEEEECTTCCCCE
T ss_pred cccCcccccCh----------------------------------------------hhhhhhcccceeEEecCCCccCc
Confidence 77776653222 1233333444 44444444443
Q ss_pred cCchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCc--CEEeccCC---cCcccCChhHhhcC--CCCcEEEccCCcCc
Q 038858 246 EFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSL--RLLDVSNN---NFQGRIPAEIGDIL--PSLSSFNISMNALD 318 (740)
Q Consensus 246 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~l~~n---~l~~~~~~~~~~~~--~~L~~L~l~~n~~~ 318 (740)
..|..+ ....|++|++++|... +..+..+..+ +.+.+... ... .++...+..+ .+|++|++++|.++
T Consensus 194 ~~~~~~--~~~~L~~L~l~~~~~~---~~~~~~l~~~~l~~l~~~~~~~~~~~-~i~~~~~~~l~~~~L~~L~l~~n~l~ 267 (606)
T 3t6q_A 194 IEPGAF--DSAVFQSLNFGGTQNL---LVIFKGLKNSTIQSLWLGTFEDMDDE-DISPAVFEGLCEMSVESINLQKHYFF 267 (606)
T ss_dssp ECTTTT--TTCEEEEEECTTCSCH---HHHHHHTTTCEEEEEECCCCTTSCCC-CCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred cChhHh--hhccccccccCCchhH---HHHhhhccccchhheechhhcccccc-ccChhHhchhhcCceeEEEeecCccC
Confidence 333332 2234444444444210 0011111111 11111110 000 1222222222 27889999999998
Q ss_pred ccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCc-cc
Q 038858 319 GSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIP-QS 397 (740)
Q Consensus 319 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~ 397 (740)
+..+..|..+++|++|++++|.++ .+|..+. ++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ ..
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATHLS-ELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCC-SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSST
T ss_pred ccCHHHhccccCCCEEeccCCccC-CCChhhc-ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhh
Confidence 888888999999999999999988 7877654 78899999999999988877788889999999999998875554 45
Q ss_pred cccCCCCCeEEccCCcCcccC--CCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcC
Q 038858 398 LSKCLSLEGLHLNNNNLSGKI--PQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRL 475 (740)
Q Consensus 398 ~~~l~~L~~L~l~~n~i~~~~--~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l 475 (740)
+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------- 416 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD--------- 416 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCT---------
T ss_pred hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcc---------
Confidence 888999999999999988655 678889999999999999998888889999999999999999887432
Q ss_pred CccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCC---CCcccccccchhhhccccceEEccC
Q 038858 476 NGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLI---PPCFDNTALHERRVLSLLSGIDLSC 552 (740)
Q Consensus 476 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~---~~~~~~~~~~~~~~l~~L~~L~l~~ 552 (740)
.+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+.. +..+.. +++|+.|++++
T Consensus 417 ---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~--------l~~L~~L~Ls~ 485 (606)
T 3t6q_A 417 ---AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT--------LGRLEILVLSF 485 (606)
T ss_dssp ---TCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG--------CTTCCEEECTT
T ss_pred ---cchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc--------CCCccEEECCC
Confidence 2344778899999999999999888999999999999999999987632 233433 68999999999
Q ss_pred ccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCC
Q 038858 553 NKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIP 632 (740)
Q Consensus 553 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 632 (740)
|++++..|..|..+++|++|+|++|++++..|..|..+++| +|++++|++++..|..+..+++|+.+++++|++.+..+
T Consensus 486 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99999989999999999999999999999999999999999 99999999999999989999999999999999987544
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.8e-51 Score=477.54 Aligned_cols=545 Identities=20% Similarity=0.185 Sum_probs=396.1
Q ss_pred EEeCCCCCCCCCCCCCccccCCCCCCcEEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCCCCEEe
Q 038858 9 TLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLD 88 (740)
Q Consensus 9 ~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 88 (740)
..|.++++++.+ | . -.++|++|++++|.+.+..+..+.. +++|++|++++|...+.+++..|.++++|++|+
T Consensus 8 ~~dcs~~~L~~v-P----~--lp~~l~~LdLs~N~i~~i~~~~~~~-l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~ 79 (844)
T 3j0a_A 8 IAFYRFCNLTQV-P----Q--VLNTTERLLLSFNYIRTVTASSFPF-LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79 (844)
T ss_dssp EEEESCCCSSCC-C----S--SCTTCCEEEEESCCCCEECSSSCSS-CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEE
T ss_pred EEEccCCCCCCC-C----C--CCCCcCEEECCCCcCCccChhHCcc-cccCeEEeCCCCCCccccCHHHhcCCCCCCEEE
Confidence 456666666666 2 2 4467888888888877776677776 788888888888666566666688888888888
Q ss_pred cCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCc-cccCCCCCCCEEEccCCccccccC-ccccCCCCCCEE
Q 038858 89 MNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILD-QGLCPLVHLQELHMANNDLRGSLP-WCLANMTSLRTL 166 (740)
Q Consensus 89 L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L 166 (740)
|++| .+.+..+..+.. +++|++|++++|.+. +.++. ..+.++++|++|++++|.+.+..+ ..++++++|++|
T Consensus 80 Ls~N--~l~~~~p~~~~~-l~~L~~L~Ls~n~l~---~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L 153 (844)
T 3j0a_A 80 LGSS--KIYFLHPDAFQG-LFHLFELRLYFCGLS---DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI 153 (844)
T ss_dssp CTTC--CCCEECTTSSCS-CSSCCCEECTTCCCS---SCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE
T ss_pred CCCC--cCcccCHhHccC-CcccCEeeCcCCCCC---cccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE
Confidence 8888 344444555655 888888888888776 43333 237778888888888888876544 467788888888
Q ss_pred EccCCcCccccCCCchhhcccccccchhcccccCCCCCCccccEEEccCCCCCCCCCchhhcCCC------CCCEEEccC
Q 038858 167 DVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQN------KLEDVDLSH 240 (740)
Q Consensus 167 ~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~------~L~~L~l~~ 240 (740)
++++|.+++..+..+..+ ...+|+.|++ ..+...+..+..+..+. .|+.|++++
T Consensus 154 ~Ls~N~i~~~~~~~l~~l-------------------~~~~L~~L~L-~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 213 (844)
T 3j0a_A 154 DFSSNQIFLVCEHELEPL-------------------QGKTLSFFSL-AANSLYSRVSVDWGKCMNPFRNMVLEILDVSG 213 (844)
T ss_dssp EEESSCCCCCCSGGGHHH-------------------HHCSSCCCEE-CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSS
T ss_pred ECCCCcCCeeCHHHcccc-------------------cCCccceEEC-CCCccccccccchhhcCCccccCceeEEecCC
Confidence 888887765444321000 0025566666 33344444443333333 377888887
Q ss_pred CCCcccCchHhhhcC--CCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhh-cCCCCcEEEccCCcC
Q 038858 241 IKMNGEFPNWLLENN--TKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGD-ILPSLSSFNISMNAL 317 (740)
Q Consensus 241 ~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-~~~~L~~L~l~~n~~ 317 (740)
|.+.+..+..+...+ ..++.+.+..+..... +..+.+.+..+..+.. ..++|++|++++|.+
T Consensus 214 n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~---------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l 278 (844)
T 3j0a_A 214 NGWTVDITGNFSNAISKSQAFSLILAHHIMGAG---------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV 278 (844)
T ss_dssp CCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS---------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCC
T ss_pred CcCchhHHHHHHhhcCcccccceeccccccccc---------------ccccccCCCChhhhhccccCCccEEECCCCcc
Confidence 777766666553322 4455665554332210 1112222111111111 136899999999999
Q ss_pred cccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccc
Q 038858 318 DGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQS 397 (740)
Q Consensus 318 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 397 (740)
.+..+..|..+++|+.|++++|.+. .++...+.++++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..
T Consensus 279 ~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~ 357 (844)
T 3j0a_A 279 FSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT 357 (844)
T ss_dssp CEECSCCSSSCCCCCEEEEESCCCC-EECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSC
T ss_pred cccChhhhhcCCCCCEEECCCCcCC-CCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhh
Confidence 9888889999999999999999998 444445568999999999999999888888999999999999999998888888
Q ss_pred cccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCc
Q 038858 398 LSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNG 477 (740)
Q Consensus 398 ~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~ 477 (740)
|..+++|++|++++|.+++ +..+++|+.|++++|+++.. |.. ..+++.|++++|++.+.
T Consensus 358 ~~~l~~L~~L~Ls~N~l~~-----i~~~~~L~~L~l~~N~l~~l-~~~---~~~l~~L~ls~N~l~~l------------ 416 (844)
T 3j0a_A 358 FKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLVTL-PKI---NLTANLIHLSENRLENL------------ 416 (844)
T ss_dssp SCSCCCCCEEEEETCCSCC-----CSSCCSCSEEEEESCCCCCC-CCC---CTTCCEEECCSCCCCSS------------
T ss_pred hcCCCCCCEEECCCCCCCc-----ccCCCCcchhccCCCCcccc-ccc---ccccceeecccCccccC------------
Confidence 9999999999999999873 23378899999999999843 332 56789999999998732
Q ss_pred cCchhhhccccCcEEEcccccccccccc-cccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCcccc
Q 038858 478 SIPDRIDGLLRLSHLILAHNNLEGEVPV-QLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLI 556 (740)
Q Consensus 478 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 556 (740)
..+..+..+++|+.|++++|.+++..+. .+..+++|+.|++++|.+....+..... ..+..+++|+.|++++|.++
T Consensus 417 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~---~~~~~l~~L~~L~Ls~N~l~ 493 (844)
T 3j0a_A 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW---DVFEGLSHLQVLYLNHNYLN 493 (844)
T ss_dssp TTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCS---SCSSCBCCEECCCCCHHHHT
T ss_pred chhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccch---hhhcCcccccEEECCCCccc
Confidence 2234456889999999999999865443 4667899999999999997444322111 11223689999999999999
Q ss_pred ccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCC
Q 038858 557 GDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIP 632 (740)
Q Consensus 557 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 632 (740)
+..|..|..+++|+.|+|++|++++..+..+. ++|+.|++++|++++..|..| ++|+.+++++|++.+..+
T Consensus 494 ~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 494 SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE 564 (844)
T ss_dssp TCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred ccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccc
Confidence 99999999999999999999999988887777 899999999999999888765 589999999999987543
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.2e-49 Score=450.48 Aligned_cols=574 Identities=19% Similarity=0.182 Sum_probs=352.4
Q ss_pred CCEEeCCCCCCCCCCCCCccccCCCCCCcEEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCCCCE
Q 038858 7 LNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEY 86 (740)
Q Consensus 7 L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 86 (740)
-++++.+++.++.+.. .+. ++|++|++++|.+.+..+..+.+ +++|++|++++|.+++ +++..|.++++|++
T Consensus 13 ~~~~~c~~~~l~~ip~----~~~--~~l~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~-i~~~~~~~l~~L~~ 84 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPD----DIP--SSTKNIDLSFNPLKILKSYSFSN-FSELQWLDLSRCEIET-IEDKAWHGLHHLSN 84 (606)
T ss_dssp TTEEECTTSCCSSCCT----TSC--TTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTCCCCE-ECTTTTTTCTTCCE
T ss_pred CCceEccCCCcccCCC----CCC--CCcCEEECCCCCcCEeChhhccC-CccCcEEeCCCCcccc-cCHHHhhchhhcCE
Confidence 3578888888877732 232 88999999999998887778888 9999999999999984 44556899999999
Q ss_pred EecCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCcccc-ccCccccCCCCCCE
Q 038858 87 LDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRG-SLPWCLANMTSLRT 165 (740)
Q Consensus 87 L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~-~~~~~l~~l~~L~~ 165 (740)
|++++| .+.+..+..+.. +++|++|++++|.+. .++...++++++|++|++++|.+.+ .+|..++++++|++
T Consensus 85 L~Ls~n--~l~~~~p~~~~~-l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~ 157 (606)
T 3vq2_A 85 LILTGN--PIQSFSPGSFSG-LTSLENLVAVETKLA----SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVH 157 (606)
T ss_dssp EECTTC--CCCCCCTTSSTT-CTTCCEEECTTSCCC----CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCE
T ss_pred eECCCC--cccccChhhcCC-cccCCEEEccCCccc----cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCE
Confidence 999999 445555666777 999999999999887 4554479999999999999999986 56889999999999
Q ss_pred EEccCCcCccccCCCchhhcccccccchhcccccCCCCCCc-cccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCc
Q 038858 166 LDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNF-QLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMN 244 (740)
Q Consensus 166 L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 244 (740)
|++++|.+++..+..+..+ .... .+..|++ ..+.+....+..+.. .+|+.|++++|.+.
T Consensus 158 L~Ls~n~l~~~~~~~~~~l------------------~~L~~~l~~L~l-~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~ 217 (606)
T 3vq2_A 158 VDLSYNYIQTITVNDLQFL------------------RENPQVNLSLDM-SLNPIDFIQDQAFQG-IKLHELTLRGNFNS 217 (606)
T ss_dssp EECCSSCCCEECTTTTHHH------------------HHCTTCCCEEEC-TTCCCCEECTTTTTT-CEEEEEEEESCCSC
T ss_pred EEccCCcceecChhhhhhh------------------hccccccceeec-cCCCcceeCcccccC-ceeeeeeccCCccc
Confidence 9999999986555432100 0000 1346777 444444333333333 37888888888877
Q ss_pred ccCchHhhhcCCCCCEEeccCCcccCCCC------CCCCCCC--CcCEEec-cCCcCcccCChhHhhcCCCCcEEEccCC
Q 038858 245 GEFPNWLLENNTKLESLSLVNDSLAGPFR------LPIHSHK--SLRLLDV-SNNNFQGRIPAEIGDILPSLSSFNISMN 315 (740)
Q Consensus 245 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------~~l~~~~--~L~~L~l-~~n~l~~~~~~~~~~~~~~L~~L~l~~n 315 (740)
+......+++++.++.+.+..+.+..... ..+..+. .++.+++ ..+.+.+.+|. +..+++|++|++++|
T Consensus 218 ~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~ 295 (606)
T 3vq2_A 218 SNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGV 295 (606)
T ss_dssp HHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESC
T ss_pred hhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEEecCc
Confidence 54444445788888887776554432111 0011111 2333444 33344433333 222455555555555
Q ss_pred cCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCc
Q 038858 316 ALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIP 395 (740)
Q Consensus 316 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 395 (740)
.+.. +| .+..+++|++|++++|.+. .+|.. .+++|++|++++|...+.. .+..+++|++|++++|.+.+..
T Consensus 296 ~~~~-l~-~l~~~~~L~~L~l~~n~l~-~lp~~---~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~- 366 (606)
T 3vq2_A 296 SIKY-LE-DVPKHFKWQSLSIIRCQLK-QFPTL---DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSG- 366 (606)
T ss_dssp CCCC-CC-CCCTTCCCSEEEEESCCCS-SCCCC---CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEE-
T ss_pred cchh-hh-hccccccCCEEEcccccCc-ccccC---CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCc-
Confidence 5542 23 4455555555555555552 44421 3455555555555322211 2334444444555444444331
Q ss_pred cccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcC
Q 038858 396 QSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRL 475 (740)
Q Consensus 396 ~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l 475 (740)
..+..+..+++|++|++++|.+.+ .+..+..+++|+.|++++|++.+.
T Consensus 367 ---------------------~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~---------- 414 (606)
T 3vq2_A 367 ---------------------CCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRV---------- 414 (606)
T ss_dssp ---------------------ECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEEST----------
T ss_pred ---------------------chhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCc----------
Confidence 013344444555555555555442 224445555555555555554421
Q ss_pred CccCc-hhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccC-CCCCcccccccchhhhccccceEEccCc
Q 038858 476 NGSIP-DRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHG-LIPPCFDNTALHERRVLSLLSGIDLSCN 553 (740)
Q Consensus 476 ~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~n 553 (740)
.| ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+ ..|..+.. +++|+.|++++|
T Consensus 415 ---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--------l~~L~~L~Ls~n 483 (606)
T 3vq2_A 415 ---TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN--------TTNLTFLDLSKC 483 (606)
T ss_dssp ---TTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT--------CTTCCEEECTTS
T ss_pred ---cChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc--------CCCCCEEECCCC
Confidence 11 234555666666666666665666666667777777777777665 34555554 467777777777
Q ss_pred cccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCC-CCCEEEccCCcccccCC
Q 038858 554 KLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELN-ALVVFSVAYNNLSGKIP 632 (740)
Q Consensus 554 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~ 632 (740)
.+++..|..|..+++|++|+|++|++++..|..|..+++|++|++++|+++ .+|..+..++ +|+++++++|++.+..+
T Consensus 484 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred cCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 777777788888999999999999999888999999999999999999998 6677788887 59999999999987544
Q ss_pred CCCccccCCCccccCCCCCCCCC-CCCCCCCCCcccccCCCCCCC
Q 038858 633 EMTTQFATFNESNYKGNPFLCGL-PLPICRSPVTMLEASTSNEGD 676 (740)
Q Consensus 633 ~~~~~~~~l~~~~~~~Np~~C~~-~~~~c~~~~~~~~~~~~~~~~ 676 (740)
.. .....++ .++-...- ....|..|....+.....++.
T Consensus 563 ~~-~~~~~l~-----~~~~~~~~~~~~~C~~p~~~~~~~l~~~~~ 601 (606)
T 3vq2_A 563 HQ-KFLQWVK-----EQKQFLVNVEQMTCATPVEMNTSLVLDFNN 601 (606)
T ss_dssp TH-HHHTTTT-----TSSSSBSSGGGCCCC---------------
T ss_pred cH-HHHHHHH-----cCcccccCCccceeCCChHhCCCEeeeccc
Confidence 21 1111121 11111110 112677777777765554443
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.1e-46 Score=419.61 Aligned_cols=470 Identities=20% Similarity=0.222 Sum_probs=378.0
Q ss_pred CCCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCccccccCccccCCCCCCEEEccCCcCccccCCCchhhcccc
Q 038858 109 PFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYN 188 (740)
Q Consensus 109 ~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 188 (740)
+++++|++++|.+. .++...|.++++|++|++++|++++..+..|+++++|++|++++|.+++..
T Consensus 28 ~~l~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~----------- 92 (570)
T 2z63_A 28 FSTKNLDLSFNPLR----HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA----------- 92 (570)
T ss_dssp SSCCEEECCSCCCC----EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-----------
T ss_pred ccccEEEccCCccC----ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccC-----------
Confidence 46778888877775 344446777788888888888777666667777888888888877765322
Q ss_pred cccchhcccccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCchHhhhcCCCCCEEeccCCcc
Q 038858 189 NEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSL 268 (740)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 268 (740)
+..+..+++|+.|++++|.+.+..+.. ++.+++|++|++++|.+
T Consensus 93 -----------------------------------~~~~~~l~~L~~L~L~~n~l~~l~~~~-~~~l~~L~~L~L~~n~l 136 (570)
T 2z63_A 93 -----------------------------------LGAFSGLSSLQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLI 136 (570)
T ss_dssp -----------------------------------TTTTTTCTTCCEEECTTSCCCCSTTCS-CTTCTTCCEEECCSSCC
T ss_pred -----------------------------------HhhhcCccccccccccccccccCCCcc-ccccccccEEecCCCcc
Confidence 235677889999999999998544434 48999999999999999
Q ss_pred cCC-CCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCC----cEEEccCCcCcccCCccccCCCCCcEEEeecccCCC
Q 038858 269 AGP-FRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSL----SSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTG 343 (740)
Q Consensus 269 ~~~-~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L----~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 343 (740)
.+. .+..+..+++|++|++++|.+.+..+..+.. +++| ++|++++|.+++..+..|... +|++|++++|....
T Consensus 137 ~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~ 214 (570)
T 2z63_A 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSL 214 (570)
T ss_dssp CCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHH-HHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCT
T ss_pred ceecChhhhcccCCCCEEeCcCCccceecHHHccc-hhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccc
Confidence 874 5778899999999999999998544444443 6677 899999999998888888766 79999999874331
Q ss_pred c------------------------------cChhhhhcCc--cCcEEEcCCc-cccccCCcCCCCCCCCCeEEccCCcc
Q 038858 344 E------------------------------IPEHLAIGCV--NLEILVLSNN-NLEGHMFSKNFNLTKLSWLLLEDNHF 390 (740)
Q Consensus 344 ~------------------------------~~~~~~~~l~--~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~ 390 (740)
. ++...+.+++ .++.++++++ .+.+..+..+..+++|++|++++|.+
T Consensus 215 ~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 294 (570)
T 2z63_A 215 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294 (570)
T ss_dssp THHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEE
T ss_pred cchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccc
Confidence 1 1111111222 2344555555 45556667777889999999999988
Q ss_pred cccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCC
Q 038858 391 VEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYL 470 (740)
Q Consensus 391 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 470 (740)
.+ +|..+..+ +|++|++++|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|.+++.
T Consensus 295 ~~-l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~----- 362 (570)
T 2z63_A 295 ER-VKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFK----- 362 (570)
T ss_dssp CS-CCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEE-----
T ss_pred hh-hhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcc-----
Confidence 74 56667777 9999999999887 4444 4678899999999988765544 6789999999999987621
Q ss_pred CCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCC-CcccccccchhhhccccceEE
Q 038858 471 SYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIP-PCFDNTALHERRVLSLLSGID 549 (740)
Q Consensus 471 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~~~~l~~L~~L~ 549 (740)
+..+..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+.. +++|+.|+
T Consensus 363 ------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~--------l~~L~~L~ 427 (570)
T 2z63_A 363 ------GCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLS--------LRNLIYLD 427 (570)
T ss_dssp ------EEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTT--------CTTCCEEE
T ss_pred ------ccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhc--------CCCCCEEe
Confidence 12367788999999999999999866555 9999999999999999987765 34544 67999999
Q ss_pred ccCccccccCCcCccCCCcCcEEeCcCCcCC-CccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCccc
Q 038858 550 LSCNKLIGDIPPQIGNLTRIQTLNLSHNNLT-GTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLS 628 (740)
Q Consensus 550 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 628 (740)
+++|.+.+..|..+..+++|++|++++|.++ +..|..+..+++|++|++++|++++..|..+..+++|++|++++|+++
T Consensus 428 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 507 (570)
T 2z63_A 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507 (570)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred CcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC
Confidence 9999999999999999999999999999998 578899999999999999999999888999999999999999999999
Q ss_pred ccCCCCCccccCCCccccCCCCCCCCCCCC
Q 038858 629 GKIPEMTTQFATFNESNYKGNPFLCGLPLP 658 (740)
Q Consensus 629 ~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~ 658 (740)
+..|..+..+++|+.+++++||+.|+|+..
T Consensus 508 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 508 SVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred CCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 999988899999999999999999999854
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-45 Score=413.54 Aligned_cols=492 Identities=20% Similarity=0.234 Sum_probs=314.3
Q ss_pred CCCcEEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCCCCEEecCCCccccCccchHHHhccCCCC
Q 038858 32 TNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFL 111 (740)
Q Consensus 32 ~~L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L 111 (740)
+++++|++++|.+.+..+..+.. +++|++|++++|.+. .+++..|.++++|++|++++|. +....+..+.. +++|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~-l~~L 102 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP--IQSLALGAFSG-LSSL 102 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTT-CSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCC--CCEECTTTTTT-CTTC
T ss_pred ccccEEEccCCccCccChhHhhC-CCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCc--CCccCHhhhcC-cccc
Confidence 35666666666665554445555 566666666666555 2333345556666666666652 22222233333 5555
Q ss_pred cEEEccCcccccCCCCCCccccCCCCCCCEEEccCCcccc-ccCccccCCCCCCEEEccCCcCccccCCCchhhcccccc
Q 038858 112 KYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRG-SLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNE 190 (740)
Q Consensus 112 ~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 190 (740)
++|++++|.+. .++...++++++|++|++++|.+.+ .+|..++++++|++|++++|.++
T Consensus 103 ~~L~L~~n~l~----~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~---------------- 162 (570)
T 2z63_A 103 QKLVAVETNLA----SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ---------------- 162 (570)
T ss_dssp CEEECTTSCCC----CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC----------------
T ss_pred ccccccccccc----cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc----------------
Confidence 55555555544 2332235555555555555555543 23455555555555555555443
Q ss_pred cchhcccccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCchHhhhcCCCC----CEEeccCC
Q 038858 191 INAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKL----ESLSLVND 266 (740)
Q Consensus 191 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L----~~L~l~~~ 266 (740)
+..+..+ +.+++| ++|++++|
T Consensus 163 ------------------------------------------------------~~~~~~~-~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 163 ------------------------------------------------------SIYCTDL-RVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp ------------------------------------------------------EECGGGG-HHHHTCTTCCCEEECTTC
T ss_pred ------------------------------------------------------eecHHHc-cchhccchhhhhcccCCC
Confidence 3222222 333333 44444444
Q ss_pred cccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcC------cccCCccccCCCC--CcEEEeec
Q 038858 267 SLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNAL------DGSIPSSFGNMNF--LQILDLSN 338 (740)
Q Consensus 267 ~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~------~~~~~~~~~~l~~--L~~L~L~~ 338 (740)
.+.+..+..+... +|++|++++|.............++.++.+.+....+ .......+.+++. ++.+++++
T Consensus 188 ~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 266 (570)
T 2z63_A 188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266 (570)
T ss_dssp CCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred CceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence 4444333333332 4555555554322111111222244444444332111 1112222333322 44556665
Q ss_pred c-cCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCccc
Q 038858 339 N-HLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGK 417 (740)
Q Consensus 339 n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~ 417 (740)
+ .+.+..+..+ ..+++|++|++++|.+.+ .+..+..+ +|++|++++|.+.. +|. ..+++|++|++++|.+.+.
T Consensus 267 ~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~~-l~~--~~l~~L~~L~l~~n~~~~~ 340 (570)
T 2z63_A 267 LDYYLDDIIDLF-NCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFGQ-FPT--LKLKSLKRLTFTSNKGGNA 340 (570)
T ss_dssp TTEEESCSTTTT-GGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCSS-CCB--CBCSSCCEEEEESCBSCCB
T ss_pred chhhhhhchhhh-cCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCcccc-cCc--ccccccCEEeCcCCccccc
Confidence 5 4443444333 356777777777777764 33445555 78888888887763 332 4677888888888877654
Q ss_pred CCCCCCCccCcceeeccCCcccCCC--CccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcc
Q 038858 418 IPQWLGNLTGLQYIIIPENHLEGPI--PVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILA 495 (740)
Q Consensus 418 ~~~~l~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~ 495 (740)
.+. ..+++|++|++++|.+++.. +..+..+++|++|++++|.+. ..+..+..+++|++|+++
T Consensus 341 ~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~--------------~~~~~~~~l~~L~~L~l~ 404 (570)
T 2z63_A 341 FSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI--------------TMSSNFLGLEQLEHLDFQ 404 (570)
T ss_dssp CCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE--------------EEEEEEETCTTCCEEECT
T ss_pred ccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc--------------cccccccccCCCCEEEcc
Confidence 443 56788888888888887543 566778889999999988876 334447788899999999
Q ss_pred ccccccccc-ccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCcccc-ccCCcCccCCCcCcEEe
Q 038858 496 HNNLEGEVP-VQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLI-GDIPPQIGNLTRIQTLN 573 (740)
Q Consensus 496 ~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~ 573 (740)
+|.+.+..+ ..+..+++|++|++++|.+.+..|..+.. +++|+.|++++|.+. +.+|..+..+++|++|+
T Consensus 405 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~ 476 (570)
T 2z63_A 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG--------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476 (570)
T ss_dssp TSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT--------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred CCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc--------CCcCcEEECcCCcCccccchhhhhcccCCCEEE
Confidence 998887655 56888999999999999998888877766 679999999999987 56888999999999999
Q ss_pred CcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCC
Q 038858 574 LSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEM 634 (740)
Q Consensus 574 L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 634 (740)
+++|++++..|..|..+++|++|++++|++++..|..+..+++|+.|++++|++++..|..
T Consensus 477 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred CCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 9999999988999999999999999999999888888999999999999999999887763
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.6e-46 Score=415.27 Aligned_cols=495 Identities=18% Similarity=0.195 Sum_probs=335.6
Q ss_pred CCCEEEcCCCCCCCcCCCCCCCCCCCCCEEecCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCCCC
Q 038858 58 SLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLV 137 (740)
Q Consensus 58 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~ 137 (740)
.....+.+++.++ .+|.. +. ++|++|++++|. +.+..+..+.. +++|++|++++|.+. .+++..|.+++
T Consensus 6 ~~~~c~~~~~~l~-~ip~~-~~--~~L~~L~Ls~n~--l~~~~~~~~~~-l~~L~~L~Ls~n~i~----~~~~~~~~~l~ 74 (549)
T 2z81_A 6 ASGVCDGRSRSFT-SIPSG-LT--AAMKSLDLSFNK--ITYIGHGDLRA-CANLQVLILKSSRIN----TIEGDAFYSLG 74 (549)
T ss_dssp TTSEEECTTSCCS-SCCSC-CC--TTCCEEECCSSC--CCEECSSTTSS-CTTCCEEECTTSCCC----EECTTTTTTCT
T ss_pred CCceEECCCCccc-ccccc-CC--CCccEEECcCCc--cCccChhhhhc-CCcccEEECCCCCcC----ccChhhccccc
Confidence 3344556666665 44443 32 677778887773 34433445555 777888888877776 34444788888
Q ss_pred CCCEEEccCCccccccCccccCCCCCCEEEccCCcCccccCCCchhhcccccccchhcccccCCCCCCccccEEEccCCC
Q 038858 138 HLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGY 217 (740)
Q Consensus 138 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 217 (740)
+|++|++++|.+.+..+..++++++|++|++++|.+++.
T Consensus 75 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~----------------------------------------- 113 (549)
T 2z81_A 75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL----------------------------------------- 113 (549)
T ss_dssp TCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSS-----------------------------------------
T ss_pred cCCEEECCCCccCccCHHHhccCCCCcEEECCCCccccc-----------------------------------------
Confidence 888888888888876666688888888888888877531
Q ss_pred CCCCCCchhhcCCCCCCEEEccCCCCcccCchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCC
Q 038858 218 EDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIP 297 (740)
Q Consensus 218 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 297 (740)
..+..+..+++|+.|++++|...+.+|...++.+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+|
T Consensus 114 ----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~ 188 (549)
T 2z81_A 114 ----GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLL 188 (549)
T ss_dssp ----CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THH
T ss_pred ----chhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccc
Confidence 112245567788888888887555665444578888888899888888877888888999999999999886 677
Q ss_pred hhHhhcCCCCcEEEccCCcCcccC--C-ccccCCCCCcEEEeecccCCCccChhhh---hcCccCcEEEcCCccccccCC
Q 038858 298 AEIGDILPSLSSFNISMNALDGSI--P-SSFGNMNFLQILDLSNNHLTGEIPEHLA---IGCVNLEILVLSNNNLEGHMF 371 (740)
Q Consensus 298 ~~~~~~~~~L~~L~l~~n~~~~~~--~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~ 371 (740)
..++..+++|++|++++|.+++.. + .....+++|+.|++++|.+.+..+..+. ..+++|+.+++++|.+.+...
T Consensus 189 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~ 268 (549)
T 2z81_A 189 EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD 268 (549)
T ss_dssp HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSC
T ss_pred hhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccc
Confidence 777666889999999999988642 1 2334578889999998887754443322 245667777777776654311
Q ss_pred cCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccC-----CCCCCCccCcceeeccCCcccCCCCccc
Q 038858 372 SKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKI-----PQWLGNLTGLQYIIIPENHLEGPIPVAF 446 (740)
Q Consensus 372 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~-----~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 446 (740)
... .....+..+.+|+.|++.++.+.... +..+...++|+.|++++|.+. .+|..+
T Consensus 269 ~~~------------------~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~ 329 (549)
T 2z81_A 269 FNP------------------SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSF 329 (549)
T ss_dssp CCC------------------CTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHH
T ss_pred ccc------------------cchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHH
Confidence 000 00012234445555555555443210 111122356777777777766 333333
Q ss_pred -cCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEccccccccccc--ccccCCCcccEEeCCCccc
Q 038858 447 -CQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVP--VQLCGLNQLQLLDLSDNKL 523 (740)
Q Consensus 447 -~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~L~~n~l 523 (740)
..+++|++|++++|++.+..|. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|++
T Consensus 330 ~~~l~~L~~L~Ls~N~l~~~~~~----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 399 (549)
T 2z81_A 330 SQHLKSLEFLDLSENLMVEEYLK----------NSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF 399 (549)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHH----------HHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred HhcCccccEEEccCCcccccccc----------chhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCC
Confidence 4577777777777776532110 01224566777777777777765432 4467777788888888877
Q ss_pred cCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcC
Q 038858 524 HGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKL 603 (740)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 603 (740)
+ .+|..+.. +++|+.|++++|++++ +|..+ .++|++|++++|++++.. ..+++|++|++++|++
T Consensus 400 ~-~lp~~~~~--------~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l 463 (549)
T 2z81_A 400 H-PMPDSCQW--------PEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKL 463 (549)
T ss_dssp C-CCCSCCCC--------CTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCC
T ss_pred c-cCChhhcc--------cccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCcc
Confidence 6 34444443 4678888888888763 33332 257899999999888643 5788999999999999
Q ss_pred CccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCCCCCC
Q 038858 604 NGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLP 656 (740)
Q Consensus 604 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~ 656 (740)
+ .+|. ...+++|++|++++|++++.+|+.+..+++++.+++++|||.|+|+
T Consensus 464 ~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 464 K-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp S-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred C-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 8 5665 4678899999999999999888888889999999999999999997
No 14
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=8.3e-45 Score=413.96 Aligned_cols=534 Identities=20% Similarity=0.177 Sum_probs=393.6
Q ss_pred CCCCEEEcCCCCCCCcCCCCCCCCCCCCCEEecCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCCC
Q 038858 57 PSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPL 136 (740)
Q Consensus 57 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l 136 (740)
+++++|+|++|.++ .+++..|.++++|++|+|++|.| ..-.+..+.. +++|++|+|++|+++ .++...|.++
T Consensus 52 ~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i--~~i~~~~f~~-L~~L~~L~Ls~N~l~----~l~~~~f~~L 123 (635)
T 4g8a_A 52 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQS-LSHLSTLILTGNPIQ----SLALGAFSGL 123 (635)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCC--CEECTTTTTT-CTTCCEEECTTCCCC----EECGGGGTTC
T ss_pred cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcC--CCcChhHhcC-CCCCCEEEccCCcCC----CCCHHHhcCC
Confidence 36777777777776 44555577777777777777743 2222223334 777777777777765 5555567777
Q ss_pred CCCCEEEccCCccccccCccccCCCCCCEEEccCCcCccccCCCchhhcccccccchhcccccCCCCCCccccEEEccCC
Q 038858 137 VHLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSG 216 (740)
Q Consensus 137 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 216 (740)
++|++|++++|++++..+..|+++++|++|++++|.+.+.
T Consensus 124 ~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~---------------------------------------- 163 (635)
T 4g8a_A 124 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF---------------------------------------- 163 (635)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC----------------------------------------
T ss_pred CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccC----------------------------------------
Confidence 7777777777777766556677777777777777776521
Q ss_pred CCCCCCCchhhcCCCCCCEEEccCCCCcccCchHhhhcCCC----CCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcC
Q 038858 217 YEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTK----LESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNF 292 (740)
Q Consensus 217 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~----L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l 292 (740)
..|..+..+++|+.|++++|.+++..+..+ +.+.+ ...++++.|.+....+..+ ....++.+++.+|..
T Consensus 164 -----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l-~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~ 236 (635)
T 4g8a_A 164 -----KLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFD 236 (635)
T ss_dssp -----CCCGGGGGCTTCCEEECCSSCCCEECGGGG-HHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCS
T ss_pred -----CCchhhccchhhhhhcccCccccccccccc-cchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccc
Confidence 234456677788888888888876655553 33333 3467788887766544333 334567888888866
Q ss_pred cccCChhHhhcCCCCcEEEccCCc------CcccCCccccCCCCCcEEEeecccCCCcc--ChhhhhcCccCcEEEcCCc
Q 038858 293 QGRIPAEIGDILPSLSSFNISMNA------LDGSIPSSFGNMNFLQILDLSNNHLTGEI--PEHLAIGCVNLEILVLSNN 364 (740)
Q Consensus 293 ~~~~~~~~~~~~~~L~~L~l~~n~------~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~l~~L~~L~L~~n 364 (740)
...++...+..++.++...+..+. +.......+..+..+....+..+...... ....+....+++.+.+.++
T Consensus 237 ~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 316 (635)
T 4g8a_A 237 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSV 316 (635)
T ss_dssp SHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESC
T ss_pred cccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccc
Confidence 545555555557777766664332 22233445566667777776655433111 1122335678889999888
Q ss_pred cccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccC--CC
Q 038858 365 NLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEG--PI 442 (740)
Q Consensus 365 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~--~~ 442 (740)
.+.... .+.....++.|++.+|.+....+ ..+..|+.+++..|..... .....+++|+.+++++|.+.. ..
T Consensus 317 ~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~ 389 (635)
T 4g8a_A 317 TIERVK--DFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCC 389 (635)
T ss_dssp EEEECG--GGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEEC
T ss_pred cccccc--ccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCC--cccccccccccchhhcccccccccc
Confidence 876543 34456789999999998876544 3467889999999987633 234578999999999998753 34
Q ss_pred CccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEccccccccccc-ccccCCCcccEEeCCCc
Q 038858 443 PVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVP-VQLCGLNQLQLLDLSDN 521 (740)
Q Consensus 443 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n 521 (740)
+..+..+.+|+.+++..+... ..+..+..+++|+.+++..+......+ ..+..+++++.++++.|
T Consensus 390 ~~~~~~~~~L~~L~~~~~~~~--------------~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n 455 (635)
T 4g8a_A 390 SQSDFGTISLKYLDLSFNGVI--------------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 455 (635)
T ss_dssp CHHHHSCSCCCEEECCSCSEE--------------EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTS
T ss_pred ccchhhhhhhhhhhccccccc--------------cccccccccccccchhhhhcccccccccccccccccccccccccc
Confidence 556677889999999988775 344557788999999999887765543 56888999999999999
Q ss_pred cccCCCCCcccccccchhhhccccceEEccCcccc-ccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCC
Q 038858 522 KLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLI-GDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYH 600 (740)
Q Consensus 522 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 600 (740)
.+.+..+..+.. ++.++.|++++|.+. +..|..|..+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 456 ~l~~~~~~~~~~--------~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~ 527 (635)
T 4g8a_A 456 HTRVAFNGIFNG--------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527 (635)
T ss_dssp CCEECCTTTTTT--------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred cccccccccccc--------chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence 999888887776 579999999999854 46788999999999999999999999999999999999999999
Q ss_pred CcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccc-cCCCccccCCCCCCCCCCC-------------------CCC
Q 038858 601 NKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQF-ATFNESNYKGNPFLCGLPL-------------------PIC 660 (740)
Q Consensus 601 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~-~~l~~~~~~~Np~~C~~~~-------------------~~c 660 (740)
|++++..|..|..+++|++|++++|++++..|+.+..+ ++|+.+++++|||.|+|++ ..|
T Consensus 528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C 607 (635)
T 4g8a_A 528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMEC 607 (635)
T ss_dssp SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBB
T ss_pred CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCcee
Confidence 99999999999999999999999999999999988887 6899999999999999974 147
Q ss_pred CCCCcccccCCCCC
Q 038858 661 RSPVTMLEASTSNE 674 (740)
Q Consensus 661 ~~~~~~~~~~~~~~ 674 (740)
+.|...+|+.+..+
T Consensus 608 ~~P~~~~g~~l~~~ 621 (635)
T 4g8a_A 608 ATPSDKQGMPVLSL 621 (635)
T ss_dssp CSSTTTTTCBGGGC
T ss_pred CCchHHCCCEeeee
Confidence 77777766655433
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.3e-45 Score=407.12 Aligned_cols=371 Identities=20% Similarity=0.186 Sum_probs=256.0
Q ss_pred CCCCCEEeccCCcccCC-CCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCC--cEEEccCCcC--cccCCccccCCC
Q 038858 255 NTKLESLSLVNDSLAGP-FRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSL--SSFNISMNAL--DGSIPSSFGNMN 329 (740)
Q Consensus 255 l~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L--~~L~l~~n~~--~~~~~~~~~~l~ 329 (740)
+++|++|++++|.+.+. .+..++.+++|++|++++|.+.+ .. +..+++| ++|++++|.+ .+..|..+..+.
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~-~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~ 164 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SS-VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GG-GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred cCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hh-ccccccceeeEEEeecccccccccccccccccc
Confidence 34444444444444331 22334444444444444444442 11 1123444 5555555555 444444444443
Q ss_pred -CCcEEEeecccCCCccChhhhhcCccCcEEEcCCcc-------ccccCCcCCCCCCCCCeEEccCCcccccCcccc---
Q 038858 330 -FLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNN-------LEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSL--- 398 (740)
Q Consensus 330 -~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--- 398 (740)
....+++++|.+.+.++...+..+++|+.+++++|. +.+..+ .+..+++|+.|++++|.+.+.....+
T Consensus 165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~ 243 (520)
T 2z7x_B 165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQL 243 (520)
T ss_dssp EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHH
T ss_pred cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHH
Confidence 122345555555555555444556666666666654 333332 45667778888887777654322211
Q ss_pred ccCCCCCeEEccCCcCcccCCCCC-----CCccCcceeeccCCcccCCCCccccCC---CCccEEeccCCcCCCCCCCCC
Q 038858 399 SKCLSLEGLHLNNNNLSGKIPQWL-----GNLTGLQYIIIPENHLEGPIPVAFCQL---DSLQILGISDNNISGSLPSYL 470 (740)
Q Consensus 399 ~~l~~L~~L~l~~n~i~~~~~~~l-----~~l~~L~~L~l~~n~~~~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~l 470 (740)
...++|++|++++|.+.+.+|..+ ..+++|+.+++++|.+ ......+..+ .+|+.|++++|.+.+.
T Consensus 244 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~----- 317 (520)
T 2z7x_B 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHM----- 317 (520)
T ss_dssp HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCC-----
T ss_pred hhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccc-----
Confidence 124588889999888887777777 7888999999999888 2332444443 5799999999987621
Q ss_pred CCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccC--CCCCcccccccchhhhccccceE
Q 038858 471 SYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHG--LIPPCFDNTALHERRVLSLLSGI 548 (740)
Q Consensus 471 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~~~~~~l~~L~~L 548 (740)
+ .+..+++|++|++++|.+++..|..++.+++|+.|++++|++.+ ..|..+.. +++|+.|
T Consensus 318 ---------~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~--------l~~L~~L 379 (520)
T 2z7x_B 318 ---------L-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ--------MKSLQQL 379 (520)
T ss_dssp ---------C-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT--------CTTCCEE
T ss_pred ---------c-chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh--------CCCCCEE
Confidence 1 12567889999999999998888889999999999999999875 22333444 6799999
Q ss_pred EccCccccccCCc-CccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcc
Q 038858 549 DLSCNKLIGDIPP-QIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNL 627 (740)
Q Consensus 549 ~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 627 (740)
++++|.+.+.+|. .+..+++|++|++++|++++..+..+. ++|+.|++++|+++ .+|..+..+++|++|++++|++
T Consensus 380 ~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l 456 (520)
T 2z7x_B 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL 456 (520)
T ss_dssp ECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCC
T ss_pred ECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcC
Confidence 9999999974554 588899999999999999987777665 79999999999999 7888888999999999999999
Q ss_pred cccCCCCCccccCCCccccCCCCCCCCCCC
Q 038858 628 SGKIPEMTTQFATFNESNYKGNPFLCGLPL 657 (740)
Q Consensus 628 ~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~ 657 (740)
++..+..+..+++++.+++++||+.|+|+.
T Consensus 457 ~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 457 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 976555578899999999999999999974
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=9.8e-44 Score=397.11 Aligned_cols=489 Identities=19% Similarity=0.216 Sum_probs=320.5
Q ss_pred CCCCCEEeCCCCCCCCCCCCCccccCCCCCCcEEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCC
Q 038858 4 FSSLNTLCLMDNNLTEIVTTTTQELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKS 83 (740)
Q Consensus 4 l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~ 83 (740)
|+...+.|.+++.++.+.+ .+ .++|++|++++|.+.+..+..+.. +++|++|++++|.+.+ +++..|.++++
T Consensus 4 C~~~~~c~~~~~~l~~ip~----~~--~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~i~~-~~~~~~~~l~~ 75 (549)
T 2z81_A 4 CDASGVCDGRSRSFTSIPS----GL--TAAMKSLDLSFNKITYIGHGDLRA-CANLQVLILKSSRINT-IEGDAFYSLGS 75 (549)
T ss_dssp ECTTSEEECTTSCCSSCCS----CC--CTTCCEEECCSSCCCEECSSTTSS-CTTCCEEECTTSCCCE-ECTTTTTTCTT
T ss_pred CCCCceEECCCCccccccc----cC--CCCccEEECcCCccCccChhhhhc-CCcccEEECCCCCcCc-cChhhcccccc
Confidence 3445567888888877633 23 378999999999998877777877 8999999999999884 44456899999
Q ss_pred CCEEecCCCccccCccchHHHhccCCCCcEEEccCcccccCCC-CCCccccCCCCCCCEEEccCCccccccC-ccccCCC
Q 038858 84 LEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSS-RILDQGLCPLVHLQELHMANNDLRGSLP-WCLANMT 161 (740)
Q Consensus 84 L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~-~~~~~~l~~l~~L~~L~L~~n~i~~~~~-~~l~~l~ 161 (740)
|++|++++| .+.+..+..++. +++|++|++++|.+. . ..+. .+.++++|++|++++|.+.+.++ ..+++++
T Consensus 76 L~~L~Ls~n--~l~~~~~~~~~~-l~~L~~L~Ls~n~l~---~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 76 LEHLDLSDN--HLSSLSSSWFGP-LSSLKYLNLMGNPYQ---TLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp CCEEECTTS--CCCSCCHHHHTT-CTTCCEEECTTCCCS---SSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred CCEEECCCC--ccCccCHHHhcc-CCCCcEEECCCCccc---ccchhh-hhhccCCccEEECCCCccccccCHhhhhccc
Confidence 999999999 445555555766 999999999998886 3 2333 78889999999999998443444 5788899
Q ss_pred CCCEEEccCCcCccccCCCchhhcccccccchhcccccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCC
Q 038858 162 SLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHI 241 (740)
Q Consensus 162 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 241 (740)
+|++|++++|.+.+..|. .+..+++|+.|+++++
T Consensus 149 ~L~~L~L~~n~l~~~~~~----------------------------------------------~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQ----------------------------------------------SLKSIRDIHHLTLHLS 182 (549)
T ss_dssp EEEEEEEEETTCCEECTT----------------------------------------------TTTTCSEEEEEEEECS
T ss_pred ccCeeeccCCcccccChh----------------------------------------------hhhccccCceEecccC
Confidence 999999999988754443 4455667777777777
Q ss_pred CCcccCchHhhhcCCCCCEEeccCCcccCCC---CCCCCCCCCcCEEeccCCcCcccCChhHh---hcCCCCcEEEccCC
Q 038858 242 KMNGEFPNWLLENNTKLESLSLVNDSLAGPF---RLPIHSHKSLRLLDVSNNNFQGRIPAEIG---DILPSLSSFNISMN 315 (740)
Q Consensus 242 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L~l~~n~l~~~~~~~~~---~~~~~L~~L~l~~n 315 (740)
.+. .+|..+++.+++|++|++++|.+.+.. ......+++|++|++++|.+.+..+..+. ..+++|+.+++++|
T Consensus 183 ~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~ 261 (549)
T 2z81_A 183 ESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261 (549)
T ss_dssp BST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred ccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence 765 556666677888999999988887642 11234578899999999888765544433 23678888888888
Q ss_pred cCcccC------CccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCc
Q 038858 316 ALDGSI------PSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNH 389 (740)
Q Consensus 316 ~~~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 389 (740)
.+.+.. ...+..+++|+.|++.++.+... .. +..+ ...+...++|+.|++++|+
T Consensus 262 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~-~~--~~~l-----------------~~~~~~~~~L~~L~l~~n~ 321 (549)
T 2z81_A 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQF-YL--FYDL-----------------STVYSLLEKVKRITVENSK 321 (549)
T ss_dssp EEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCG-GG--SCCC-----------------CHHHHHSTTCCEEEEESSC
T ss_pred cccccccccccchhhhhhhcccccccccccccchh-hh--cccc-----------------hhhhhhcccceEEEeccCc
Confidence 766421 12345566666676666654411 00 0000 0011124567777777777
Q ss_pred ccccCcccc-ccCCCCCeEEccCCcCcccC---CCCCCCccCcceeeccCCcccCCCC--ccccCCCCccEEeccCCcCC
Q 038858 390 FVEEIPQSL-SKCLSLEGLHLNNNNLSGKI---PQWLGNLTGLQYIIIPENHLEGPIP--VAFCQLDSLQILGISDNNIS 463 (740)
Q Consensus 390 ~~~~~~~~~-~~l~~L~~L~l~~n~i~~~~---~~~l~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~L~~L~l~~n~l~ 463 (740)
+.. +|..+ ..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|+++
T Consensus 322 l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 400 (549)
T 2z81_A 322 VFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400 (549)
T ss_dssp CCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred ccc-CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc
Confidence 653 33333 46777888888887776543 2346677888888888888775432 45777888888888888876
Q ss_pred CCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhcc
Q 038858 464 GSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLS 543 (740)
Q Consensus 464 ~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~ 543 (740)
.+|..+..+++|++|++++|.+++. +..+ .++|++|++++|++++... . ++
T Consensus 401 --------------~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~~~~~----~--------l~ 451 (549)
T 2z81_A 401 --------------PMPDSCQWPEKMRFLNLSSTGIRVV-KTCI--PQTLEVLDVSNNNLDSFSL----F--------LP 451 (549)
T ss_dssp --------------CCCSCCCCCTTCCEEECTTSCCSCC-CTTS--CTTCSEEECCSSCCSCCCC----C--------CT
T ss_pred --------------cCChhhcccccccEEECCCCCcccc-cchh--cCCceEEECCCCChhhhcc----c--------CC
Confidence 4555667778888888888887732 2222 1466666666666654321 1 23
Q ss_pred ccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCcc
Q 038858 544 LLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGK 606 (740)
Q Consensus 544 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 606 (740)
+|++|++++|+++ .+|. ...+++|++|+|++|++++..+..|..+++|+.|++++|++.+.
T Consensus 452 ~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 452 RLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp TCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred hhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence 4455555555444 2332 23344444444444444444444444444444444444444433
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.2e-45 Score=416.58 Aligned_cols=371 Identities=17% Similarity=0.236 Sum_probs=258.2
Q ss_pred CCcccCCCCCCCCCCCCcCEEeccCCcCccc-----------------CChhHh--hcCCCCcEEEccCCcCcccCCccc
Q 038858 265 NDSLAGPFRLPIHSHKSLRLLDVSNNNFQGR-----------------IPAEIG--DILPSLSSFNISMNALDGSIPSSF 325 (740)
Q Consensus 265 ~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~-----------------~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~ 325 (740)
+|.+++ ++..++.+++|++|++++|.+++. +|..+. . +++|++|++++|.+.+.+|..|
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~-l~~L~~L~L~~n~l~~~~p~~l 269 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN-LKDLTDVEVYNCPNLTKLPTFL 269 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG-CTTCCEEEEECCTTCSSCCTTT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcc-cCCCCEEEecCCcCCccChHHH
Confidence 355555 455666677777777777777653 666655 4 6777777777777777777777
Q ss_pred cCCCCCcEEEeeccc-CCC-ccChhhhh-----cCccCcEEEcCCccccccCCc--CCCCCCCCCeEEccCCcccccCcc
Q 038858 326 GNMNFLQILDLSNNH-LTG-EIPEHLAI-----GCVNLEILVLSNNNLEGHMFS--KNFNLTKLSWLLLEDNHFVEEIPQ 396 (740)
Q Consensus 326 ~~l~~L~~L~L~~n~-l~~-~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~ 396 (740)
.++++|++|++++|+ +++ .+|..+.. .+++|++|++++|.++ ..+. .+..+++|++|++++|++.+.+|
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip- 347 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP- 347 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence 777777777777777 765 56665541 1377778888877777 4444 56777778888888887776666
Q ss_pred ccccCCCCCeEEccCCcCcccCCCCCCCccC-cceeeccCCcccCCCCccccCCC--CccEEeccCCcCCCCCCCCCCCC
Q 038858 397 SLSKCLSLEGLHLNNNNLSGKIPQWLGNLTG-LQYIIIPENHLEGPIPVAFCQLD--SLQILGISDNNISGSLPSYLSYN 473 (740)
Q Consensus 397 ~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~l~~n 473 (740)
.+..+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..+. +|+.|++++|.+.+..|..+...
T Consensus 348 ~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~ 425 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425 (636)
T ss_dssp CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence 6777777888888888777 66667777777 888888888777 5566665543 78888888877775444322100
Q ss_pred cCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCc
Q 038858 474 RLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCN 553 (740)
Q Consensus 474 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n 553 (740)
. .....+++|++|++++|.+++..+..+..+++|+.|++++|.++...+..+... ....+.+++|+.|++++|
T Consensus 426 ~------~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~-~~~~~~l~~L~~L~Ls~N 498 (636)
T 4eco_A 426 D------PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE-NENFKNTYLLTSIDLRFN 498 (636)
T ss_dssp C------SSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEET-TEECTTGGGCCEEECCSS
T ss_pred c------cccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccc-cccccccCCccEEECcCC
Confidence 0 001145678888888888875555556667888888888888874443333321 011222347888888888
Q ss_pred cccccCCcCcc--CCCcCcEEeCcCCcCCCccchhccCcCCCcEEEC------CCCcCCccCchhhhcCCCCCEEEccCC
Q 038858 554 KLIGDIPPQIG--NLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDL------YHNKLNGKIPCQLVELNALVVFSVAYN 625 (740)
Q Consensus 554 ~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L------s~N~l~~~~~~~~~~l~~L~~L~l~~N 625 (740)
.++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|++|++ ++|++.+.+|..+..+++|++|++++|
T Consensus 499 ~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 576 (636)
T 4eco_A 499 KLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576 (636)
T ss_dssp CCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred cCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC
Confidence 888 5666665 78888888888888886 6777778888888888 456777788888888888888888888
Q ss_pred cccccCCCCCccccCCCccccCCCCCCC
Q 038858 626 NLSGKIPEMTTQFATFNESNYKGNPFLC 653 (740)
Q Consensus 626 ~l~~~~~~~~~~~~~l~~~~~~~Np~~C 653 (740)
++ +.+|..+. ++|+.+++++||+.|
T Consensus 577 ~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 577 DI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred cC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 88 45565433 678888888888877
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.7e-45 Score=411.82 Aligned_cols=377 Identities=21% Similarity=0.224 Sum_probs=219.1
Q ss_pred CchhhcCCCCCCEEEccCCCCccc-----------------CchHhhh--cCCCCCEEeccCCcccCCCCCCCCCCCCcC
Q 038858 223 FPKFLHHQNKLEDVDLSHIKMNGE-----------------FPNWLLE--NNTKLESLSLVNDSLAGPFRLPIHSHKSLR 283 (740)
Q Consensus 223 ~~~~l~~~~~L~~L~l~~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 283 (740)
+|..++++++|+.|++++|.+++. +|..+ + ++++|++|++++|.+.+..+..+..+++|+
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 455555555666666666655543 44443 3 455555555555555555555555555555
Q ss_pred EEeccCCc-Ccc-cCChhHhhc-----CCCCcEEEccCCcCcccCCc--cccCCCCCcEEEeecccCCCccChhhhhcCc
Q 038858 284 LLDVSNNN-FQG-RIPAEIGDI-----LPSLSSFNISMNALDGSIPS--SFGNMNFLQILDLSNNHLTGEIPEHLAIGCV 354 (740)
Q Consensus 284 ~L~l~~n~-l~~-~~~~~~~~~-----~~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 354 (740)
+|++++|. +++ .+|..++.. +++|++|++++|.++ .+|. .+.++++|++|++++|.++|.+|
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-------- 347 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-------- 347 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--------
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--------
Confidence 55555554 444 444444431 144555555555444 3444 44444444444444444444444
Q ss_pred cCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCC-CCeEEccCCcCcccCCCCCCCcc--Cccee
Q 038858 355 NLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLS-LEGLHLNNNNLSGKIPQWLGNLT--GLQYI 431 (740)
Q Consensus 355 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~i~~~~~~~l~~l~--~L~~L 431 (740)
.+..+++|++|++++|++. .+|..+..+++ |++|++++|.++ .+|..+...+ +|+.|
T Consensus 348 ------------------~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L 407 (636)
T 4eco_A 348 ------------------AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAI 407 (636)
T ss_dssp ------------------CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEE
T ss_pred ------------------hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEE
Confidence 4444555555555555554 34444555555 556666655555 4444444432 56666
Q ss_pred eccCCcccCCCCcccc-------CCCCccEEeccCCcCCCCCCCCCCCCcCCccCch-hhhccccCcEEEcccccccccc
Q 038858 432 IIPENHLEGPIPVAFC-------QLDSLQILGISDNNISGSLPSYLSYNRLNGSIPD-RIDGLLRLSHLILAHNNLEGEV 503 (740)
Q Consensus 432 ~l~~n~~~~~~~~~~~-------~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~ 503 (740)
++++|.+.+..|..+. .+++|++|++++|.++ .+|. .+..+++|++|++++|.++...
T Consensus 408 ~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~--------------~lp~~~~~~l~~L~~L~Ls~N~l~~i~ 473 (636)
T 4eco_A 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS--------------KFPKELFSTGSPLSSINLMGNMLTEIP 473 (636)
T ss_dssp ECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC--------------SCCTHHHHTTCCCSEEECCSSCCSBCC
T ss_pred ECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC--------------cCCHHHHccCCCCCEEECCCCCCCCcC
Confidence 6666666555555555 5556666666666654 2222 3344666666666666666333
Q ss_pred cccccCC-------CcccEEeCCCccccCCCCCccc--ccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeC
Q 038858 504 PVQLCGL-------NQLQLLDLSDNKLHGLIPPCFD--NTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNL 574 (740)
Q Consensus 504 ~~~l~~l-------~~L~~L~L~~n~l~~~~~~~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 574 (740)
+..+... ++|+.|++++|.++ .+|..+. . +++|+.|++++|++++ +|..+..+++|++|+|
T Consensus 474 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~--------l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 474 KNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATT--------LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGI 543 (636)
T ss_dssp SSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTT--------CTTCCEEECCSSCCSS-CCCGGGGCSSCCEEEC
T ss_pred HHHhccccccccccCCccEEECcCCcCC-ccChhhhhcc--------CCCcCEEECCCCCCCC-cChhhhcCCCCCEEEC
Confidence 3333322 27777777777776 3444443 2 5677777777777775 6777777788888887
Q ss_pred ------cCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccc--cCCCcccc
Q 038858 575 ------SHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQF--ATFNESNY 646 (740)
Q Consensus 575 ------~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~--~~l~~~~~ 646 (740)
++|++.+.+|..+..+++|++|++++|++ +.+|..+. ++|+.|++++|++.......+... .....+.+
T Consensus 544 s~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~ 620 (636)
T 4eco_A 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFY 620 (636)
T ss_dssp CSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEECTTTHHHHHTTCCEEEC
T ss_pred CCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccccHHhcchhhhcccceeec
Confidence 56778888899999999999999999999 47777655 799999999998886554432221 22233444
Q ss_pred CCCCCCCCCC
Q 038858 647 KGNPFLCGLP 656 (740)
Q Consensus 647 ~~Np~~C~~~ 656 (740)
..+...|+|+
T Consensus 621 ~~~~~i~~C~ 630 (636)
T 4eco_A 621 DKTQDIRGCD 630 (636)
T ss_dssp CTTSEEESCG
T ss_pred CCccccCCCc
Confidence 4555556665
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.9e-43 Score=404.03 Aligned_cols=484 Identities=19% Similarity=0.198 Sum_probs=315.7
Q ss_pred CCCCEEEccCCccccccCccccCCCCCCEEEc-cCCcCccccCCCchhh--cccccccchh---cccccCCCCCCccccE
Q 038858 137 VHLQELHMANNDLRGSLPWCLANMTSLRTLDV-SSNQLTGSISSSPLIL--DAYNNEINAE---ITESHSLTAPNFQLKS 210 (740)
Q Consensus 137 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L-~~n~l~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~L~~ 210 (740)
.+++.|+|+++.+.+.+|..++++++|++|+| ++|.+.|..+...... ++........ ............++..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 47899999999999999999999999999999 8898877644321000 0000000000 0000000000000000
Q ss_pred E---EccCCCCCCCCCchhhcCCCCCCEEEccC--CCCcccCchHhhhcCCCCCEEeccCCcccC---------------
Q 038858 211 L---SLSSGYEDGVTFPKFLHHQNKLEDVDLSH--IKMNGEFPNWLLENNTKLESLSLVNDSLAG--------------- 270 (740)
Q Consensus 211 L---~l~~~~~~~~~~~~~l~~~~~L~~L~l~~--~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--------------- 270 (740)
+ .+..... ..+........++.+.+.. |.+++ +|..+ +++++|++|++++|.+++
T Consensus 403 l~~~~l~~~~~---~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l-~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~ 477 (876)
T 4ecn_A 403 LLQDAINRNPE---MKPIKKDSRISLKDTQIGNLTNRITF-ISKAI-QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYA 477 (876)
T ss_dssp HHHHHHHTCTT---SCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred HHHHHhhhCcc---ccccccccccchhhceeccccCcccc-hhHHH-hcCCCCCEEECcCCcCCCCcccccccccccccc
Confidence 0 0000000 0000001112233333332 55555 56654 667777777777777766
Q ss_pred --CCCCCCC--CCCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCc-Ccc-cCCccccC-------CCCCcEEEee
Q 038858 271 --PFRLPIH--SHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNA-LDG-SIPSSFGN-------MNFLQILDLS 337 (740)
Q Consensus 271 --~~~~~l~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-~~~-~~~~~~~~-------l~~L~~L~L~ 337 (740)
..|..++ .+++|++|++++|.+.+.+|..+.. +++|++|++++|+ +++ .+|..+.. +++|++|+++
T Consensus 478 ~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~-L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls 556 (876)
T 4ecn_A 478 KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556 (876)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG-CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECC
T ss_pred cccCChhhhhccCCCCCEEECcCCCCCccChHHHhC-CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEee
Confidence 2555655 7777788888777777777766655 7778888887776 665 56654443 3478888888
Q ss_pred cccCCCccCh-hhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCC-CCeEEccCCcCc
Q 038858 338 NNHLTGEIPE-HLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLS-LEGLHLNNNNLS 415 (740)
Q Consensus 338 ~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~i~ 415 (740)
+|.++ .+|. ..+..+++|+.|++++|.+.. .+ .+..+++|+.|++++|++. .+|..+..+++ |++|++++|.++
T Consensus 557 ~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~-lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 557 YNNLE-EFPASASLQKMVKLGLLDCVHNKVRH-LE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp SSCCC-BCCCHHHHTTCTTCCEEECTTSCCCB-CC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC
T ss_pred CCcCC-ccCChhhhhcCCCCCEEECCCCCccc-ch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC
Confidence 88887 7776 233467788888888888773 33 6777788888888888877 56666777777 888888888877
Q ss_pred ccCCCCCCCccC--cceeeccCCcccCCCCccc---c--CCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhh-hccc
Q 038858 416 GKIPQWLGNLTG--LQYIIIPENHLEGPIPVAF---C--QLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRI-DGLL 487 (740)
Q Consensus 416 ~~~~~~l~~l~~--L~~L~l~~n~~~~~~~~~~---~--~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~-~~l~ 487 (740)
.+|..+..++. |+.|++++|.+.+.+|... . .+++|+.|++++|.+. .+|..+ ..++
T Consensus 633 -~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~--------------~lp~~~~~~l~ 697 (876)
T 4ecn_A 633 -YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ--------------KFPTELFATGS 697 (876)
T ss_dssp -SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC--------------SCCHHHHHTTC
T ss_pred -cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC--------------ccCHHHHccCC
Confidence 66666665543 8888888888876554322 2 2347888888888776 444443 4678
Q ss_pred cCcEEEcccccccccccccccC-------CCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCC
Q 038858 488 RLSHLILAHNNLEGEVPVQLCG-------LNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIP 560 (740)
Q Consensus 488 ~L~~L~L~~n~l~~~~~~~l~~-------l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 560 (740)
+|+.|++++|.++...+..+.. +++|+.|+|++|+++ .+|..+.. ..+++|+.|++++|.+++ +|
T Consensus 698 ~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~------~~l~~L~~L~Ls~N~L~~-lp 769 (876)
T 4ecn_A 698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA------TTLPYLSNMDVSYNCFSS-FP 769 (876)
T ss_dssp CCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST------TTCTTCCEEECCSSCCSS-CC
T ss_pred CCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhh------ccCCCcCEEEeCCCCCCc-cc
Confidence 8888888888887333333332 237888888888887 44555430 015788888888888886 67
Q ss_pred cCccCCCcCcEEeCcC------CcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCC
Q 038858 561 PQIGNLTRIQTLNLSH------NNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEM 634 (740)
Q Consensus 561 ~~~~~l~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 634 (740)
..+..+++|+.|+|++ |++.+.+|..|..+++|+.|+|++|++ +.+|..+. ++|+.|++++|++....+..
T Consensus 770 ~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~ 846 (876)
T 4ecn_A 770 TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTS 846 (876)
T ss_dssp CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGG
T ss_pred hhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHH
Confidence 7788888888888866 777888888888899999999999988 57777654 68899999999888776665
Q ss_pred CccccCCCccccCCCCCCC--CCC
Q 038858 635 TTQFATFNESNYKGNPFLC--GLP 656 (740)
Q Consensus 635 ~~~~~~l~~~~~~~Np~~C--~~~ 656 (740)
+..........+.+|++.| +|+
T Consensus 847 ~~~~~~~~~~~L~~n~~~~I~gC~ 870 (876)
T 4ecn_A 847 VCPYIEAGMYVLLYDKTQDIRGCD 870 (876)
T ss_dssp GHHHHHTTCCEEECCTTSEEESCG
T ss_pred ccccccchheeecCCCccccCCCC
Confidence 5555555667777777665 665
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.5e-42 Score=384.39 Aligned_cols=455 Identities=16% Similarity=0.130 Sum_probs=267.5
Q ss_pred CEEEcCCCCCCCcCCCCCCCCCCCCCEEecCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCCCCCC
Q 038858 60 KSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHL 139 (740)
Q Consensus 60 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L 139 (740)
++|++++|.++ .+|.. +. ++|++|++++| .+.+..+..+.. +++|++|++++|.+. .+++..|.++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~-~~--~~L~~L~Ls~n--~i~~~~~~~~~~-l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L 71 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKD-LS--QKTTILNISQN--YISELWTSDILS-LSKLRILIISHNRIQ----YLDISVFKFNQEL 71 (520)
T ss_dssp CEEECTTSCCS-SCCCS-CC--TTCSEEECCSS--CCCCCCHHHHTT-CTTCCEEECCSSCCC----EEEGGGGTTCTTC
T ss_pred ceEecCCCCcc-ccccc-cc--ccccEEECCCC--cccccChhhccc-cccccEEecCCCccC----CcChHHhhcccCC
Confidence 35666666666 34432 33 66666666666 333333444554 666666666666655 3323356666666
Q ss_pred CEEEccCCccccccCccccCCCCCCEEEccCCcCccccCCCchhhcccccccchhcccccCCCCCCccccEEEccCCCCC
Q 038858 140 QELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYED 219 (740)
Q Consensus 140 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 219 (740)
++|++++|+++ .+|.. .+++|++|++++|.+++.
T Consensus 72 ~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~------------------------------------------- 105 (520)
T 2z7x_B 72 EYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDAL------------------------------------------- 105 (520)
T ss_dssp CEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSC-------------------------------------------
T ss_pred CEEecCCCcee-ecCcc--ccCCccEEeccCCccccc-------------------------------------------
Confidence 66666666666 33433 566666666666665421
Q ss_pred CCCCchhhcCCCCCCEEEccCCCCcccCchHhhhcCCCC--CEEeccCCcc--cCCCCCCCCCCC-CcCEEeccCCcCcc
Q 038858 220 GVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKL--ESLSLVNDSL--AGPFRLPIHSHK-SLRLLDVSNNNFQG 294 (740)
Q Consensus 220 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~l~~~~-~L~~L~l~~n~l~~ 294 (740)
.+|..++.+++|+.|++++|.+.+. . +..+++| ++|++++|.+ .+..+..+..+. +...+++++|.+.+
T Consensus 106 --~~p~~~~~l~~L~~L~L~~n~l~~~---~-~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~ 179 (520)
T 2z7x_B 106 --PICKEFGNMSQLKFLGLSTTHLEKS---S-VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFH 179 (520)
T ss_dssp --CCCGGGGGCTTCCEEEEEESSCCGG---G-GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCC
T ss_pred --cchhhhccCCcceEEEecCcccchh---h-ccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchh
Confidence 1233455566666666666666541 1 2455556 7777777666 444444444433 23355667777666
Q ss_pred cCChhHhhcCCCCcEEEccCCc-------CcccCCccccCCCCCcEEEeecccCCCccChhhhh--cCccCcEEEcCCcc
Q 038858 295 RIPAEIGDILPSLSSFNISMNA-------LDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAI--GCVNLEILVLSNNN 365 (740)
Q Consensus 295 ~~~~~~~~~~~~L~~L~l~~n~-------~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--~l~~L~~L~L~~n~ 365 (740)
.++...+..+++|+.|++++|. +.+.++ .+..+++|+.|++++|.+.+..+..... ..++|++|++++|.
T Consensus 180 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 258 (520)
T 2z7x_B 180 FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK 258 (520)
T ss_dssp CCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEE
T ss_pred hhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeeccc
Confidence 6666555557777778777775 444444 5777888888888888776433222211 24578888888888
Q ss_pred ccccCCcCC-----CCCCCCCeEEccCCcccccCc-cccccC---CCCCeEEccCCcCcccCCCCCCCccCcceeeccCC
Q 038858 366 LEGHMFSKN-----FNLTKLSWLLLEDNHFVEEIP-QSLSKC---LSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPEN 436 (740)
Q Consensus 366 l~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~-~~~~~l---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n 436 (740)
+.+..+..+ ..+++|+.+++++|.+ .+| ..+..+ .+|++|++++|.+.... .+..+++|++|++++|
T Consensus 259 l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n 334 (520)
T 2z7x_B 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNN 334 (520)
T ss_dssp EESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSS
T ss_pred ccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECC
Confidence 776666655 6677777778877777 333 333333 56778888877765321 1246677777777777
Q ss_pred cccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEccccccccccc-ccccCCCcccE
Q 038858 437 HLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVP-VQLCGLNQLQL 515 (740)
Q Consensus 437 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~ 515 (740)
.+++..+..+..+++|++|++++|++++. +.+|..+..+++|++|++++|.+++.+| ..+..+++|+.
T Consensus 335 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-----------~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~ 403 (520)
T 2z7x_B 335 LLTDTVFENCGHLTELETLILQMNQLKEL-----------SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403 (520)
T ss_dssp CCCTTTTTTCCCCSSCCEEECCSSCCCBH-----------HHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred ccChhhhhhhccCCCCCEEEccCCccCcc-----------ccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence 77766666677777777777777766521 0233455666666666666666665233 23555555666
Q ss_pred EeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcE
Q 038858 516 LDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIES 595 (740)
Q Consensus 516 L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 595 (740)
|++++|++++. .|..+. ++|+.|++++|+++ .+|..+..+++|++
T Consensus 404 L~Ls~N~l~~~--------------------------------~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~ 448 (520)
T 2z7x_B 404 LNMSSNILTDT--------------------------------IFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQE 448 (520)
T ss_dssp EECCSSCCCGG--------------------------------GGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCE
T ss_pred EECcCCCCCcc--------------------------------hhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCE
Confidence 66665555433 333222 45555666666555 34444445666666
Q ss_pred EECCCCcCCccCchh-hhcCCCCCEEEccCCcccc
Q 038858 596 LDLYHNKLNGKIPCQ-LVELNALVVFSVAYNNLSG 629 (740)
Q Consensus 596 L~Ls~N~l~~~~~~~-~~~l~~L~~L~l~~N~l~~ 629 (740)
|++++|++++ +|.. +..+++|++|++++|++++
T Consensus 449 L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 449 LNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp EECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EECCCCcCCc-cCHHHhccCCcccEEECcCCCCcc
Confidence 6666666653 3332 5556666666666666654
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=9e-42 Score=388.89 Aligned_cols=516 Identities=21% Similarity=0.237 Sum_probs=290.0
Q ss_pred CCCcEEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCCCCCCCCCEEecCCCccccCccchHHHhccCCCC
Q 038858 32 TNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFL 111 (740)
Q Consensus 32 ~~L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L 111 (740)
+++++|+|++|.++...+..|.. +++|++|+|++|.+. .+++..|.++++|++|+|++|++ . .++.....++++|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~-l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l--~-~l~~~~f~~L~~L 126 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI--Q-SLALGAFSGLSSL 126 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCC--C-EECGGGGTTCTTC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhC-CCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcC--C-CCCHHHhcCCCCC
Confidence 57899999999998877778888 999999999999988 55666799999999999999954 3 3444333349999
Q ss_pred cEEEccCcccccCCCCCCccccCCCCCCCEEEccCCcccc-ccCccccCCCCCCEEEccCCcCccccCCCchhhcccccc
Q 038858 112 KYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRG-SLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNE 190 (740)
Q Consensus 112 ~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 190 (740)
++|++++|+++ .++...|+++++|++|++++|.+.+ ..|..++.+++|++|++++|++++..+..+..+.
T Consensus 127 ~~L~Ls~N~l~----~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~----- 197 (635)
T 4g8a_A 127 QKLVAVETNLA----SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH----- 197 (635)
T ss_dssp CEEECTTSCCC----CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH-----
T ss_pred CEEECCCCcCC----CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchh-----
Confidence 99999999887 5666578999999999999999875 3577888999999999999998865544321100
Q ss_pred cchhcccccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCchHhhhcCCCCCEEeccCCcccC
Q 038858 191 INAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAG 270 (740)
Q Consensus 191 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 270 (740)
........+++ ..+.... ++........++.+++.++......+...+..+..++...+..+....
T Consensus 198 ------------~l~~~~~~~~l-s~n~l~~-i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~ 263 (635)
T 4g8a_A 198 ------------QMPLLNLSLDL-SLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 263 (635)
T ss_dssp ------------TCTTCCCEEEC-TTCCCCE-ECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred ------------hhhhhhhhhhc-ccCcccc-cCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccc
Confidence 00002233444 2222221 112222333556677777665544444445666666666554332211
Q ss_pred ------CCCCCCCCCCCcCEEeccCCcCcc---cCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccC
Q 038858 271 ------PFRLPIHSHKSLRLLDVSNNNFQG---RIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHL 341 (740)
Q Consensus 271 ------~~~~~l~~~~~L~~L~l~~n~l~~---~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 341 (740)
.....+.....+...++..+.... ..+ ..+....+++.+.+.++.+... ..+.....++.|++.+|.+
T Consensus 264 ~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~ 340 (635)
T 4g8a_A 264 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGII-DLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKF 340 (635)
T ss_dssp SCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECT-TTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEE
T ss_pred ccccccccccccccccchhhhhhhhhhhcccccchh-hhhhhhcccccccccccccccc--cccccchhhhhhhcccccc
Confidence 111222233333333333322110 111 1112234555555555544421 1233444555555555554
Q ss_pred CCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCccccc--CccccccCCCCCeEEccCCcCcccCC
Q 038858 342 TGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEE--IPQSLSKCLSLEGLHLNNNNLSGKIP 419 (740)
Q Consensus 342 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~n~i~~~~~ 419 (740)
. .++.. .++.|+.+++..|...... ....+++|+.|++++|.+... .+..+..+.+|+++++..+... ..+
T Consensus 341 ~-~~~~~---~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~ 413 (635)
T 4g8a_A 341 G-QFPTL---KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMS 413 (635)
T ss_dssp S-SCCCC---BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EEC
T ss_pred c-CcCcc---cchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-ccc
Confidence 4 22221 2344555555554433221 122344555555555544321 2223334444455554444443 222
Q ss_pred CCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccc
Q 038858 420 QWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNL 499 (740)
Q Consensus 420 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 499 (740)
.. +..+++|+.+++.++...+. ..+..+..+++++.++++.|.+
T Consensus 414 ~~------------------------~~~l~~L~~l~l~~~~~~~~------------~~~~~~~~l~~l~~l~ls~n~l 457 (635)
T 4g8a_A 414 SN------------------------FLGLEQLEHLDFQHSNLKQM------------SEFSVFLSLRNLIYLDISHTHT 457 (635)
T ss_dssp SC------------------------CTTCTTCCEEECTTSEEEST------------TSSCTTTTCTTCCEEECTTSCC
T ss_pred cc------------------------ccccccccchhhhhcccccc------------cccccccccccccccccccccc
Confidence 33 44444555555544443311 1112344455555555555555
Q ss_pred cccccccccCCCcccEEeCCCcccc-CCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCc
Q 038858 500 EGEVPVQLCGLNQLQLLDLSDNKLH-GLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNN 578 (740)
Q Consensus 500 ~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 578 (740)
.+..+..+..+++|+.|++++|.+. +..|..|.. +++|+.|++++|++++..|..|.++++|++|+|++|+
T Consensus 458 ~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~--------l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~ 529 (635)
T 4g8a_A 458 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE--------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 529 (635)
T ss_dssp EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT--------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred ccccccccccchhhhhhhhhhcccccccCchhhhh--------ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCc
Confidence 5555555555556666666655432 233444443 4456666666666665666666666666666666666
Q ss_pred CCCccchhccCcCCCcEEECCCCcCCccCchhhhcC-CCCCEEEccCCcccc
Q 038858 579 LTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVEL-NALVVFSVAYNNLSG 629 (740)
Q Consensus 579 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~ 629 (740)
+++..+..|.++++|++|||++|++++..|..+..+ ++|++|++++|++++
T Consensus 530 l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 530 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 666666666666666666666666666666666655 456666666666654
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.8e-42 Score=385.40 Aligned_cols=459 Identities=22% Similarity=0.172 Sum_probs=284.7
Q ss_pred CCCEEecCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCccccccCccccCCCC
Q 038858 83 SLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGSLPWCLANMTS 162 (740)
Q Consensus 83 ~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~ 162 (740)
..++++++++.+ + .+|..+ .++|++|++++|.+. .+++..|.++++|++|++++|++++..|..|+++++
T Consensus 32 ~~~~l~ls~~~L--~-~ip~~~---~~~L~~L~Ls~N~i~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 101 (562)
T 3a79_B 32 LESMVDYSNRNL--T-HVPKDL---PPRTKALSLSQNSIS----ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQD 101 (562)
T ss_dssp -CCEEECTTSCC--C-SCCTTS---CTTCCEEECCSSCCC----CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTT
T ss_pred CCcEEEcCCCCC--c-cCCCCC---CCCcCEEECCCCCcc----ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCC
Confidence 335666666632 2 233322 245666666666554 333335566666666666666666555555666666
Q ss_pred CCEEEccCCcCccccCCCchhhcccccccchhcccccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCC
Q 038858 163 LRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIK 242 (740)
Q Consensus 163 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 242 (740)
|++|++++|.++ .+|. . .+++|+.|++++|.
T Consensus 102 L~~L~Ls~N~l~-~lp~----------------------------------------------~--~l~~L~~L~Ls~N~ 132 (562)
T 3a79_B 102 LEYLDVSHNRLQ-NISC----------------------------------------------C--PMASLRHLDLSFND 132 (562)
T ss_dssp CCEEECTTSCCC-EECS----------------------------------------------C--CCTTCSEEECCSSC
T ss_pred CCEEECCCCcCC-ccCc----------------------------------------------c--ccccCCEEECCCCC
Confidence 666666666554 1111 1 34566666666666
Q ss_pred Cccc-CchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCc--CEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcc
Q 038858 243 MNGE-FPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSL--RLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDG 319 (740)
Q Consensus 243 ~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~ 319 (740)
+.+. .|..+ +++++|++|++++|.+.+. .+..+++| ++|++++|.+.. ++
T Consensus 133 l~~l~~p~~~-~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~-----------------------~~ 185 (562)
T 3a79_B 133 FDVLPVCKEF-GNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHI-----------------------KG 185 (562)
T ss_dssp CSBCCCCGGG-GGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCC-----------------------CS
T ss_pred ccccCchHhh-cccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccc-----------------------cc
Confidence 6542 23333 5555666666655555431 22223333 555555554400 33
Q ss_pred cCCccccCCC--CCcEEEeecccCCCccChhhhhcCccCcEEEcCCcc-----ccccCCcCCCCCCCCCeEEccCCcccc
Q 038858 320 SIPSSFGNMN--FLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNN-----LEGHMFSKNFNLTKLSWLLLEDNHFVE 392 (740)
Q Consensus 320 ~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~l~~n~~~~ 392 (740)
..|..+..+. .+ .+++++|.+.+.++...+..+++|+.+++++|+ +.+ ....+..+++|+.+++.++.+.+
T Consensus 186 ~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~L~~~~l~~ 263 (562)
T 3a79_B 186 GETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVTLQHIETTW 263 (562)
T ss_dssp SSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEEEEEEEECH
T ss_pred cCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHH-HHHHHhccCcceEEEecCCcCcH
Confidence 3444443332 11 234444544444444444445555555555542 111 11223445566666665555433
Q ss_pred cC----ccccccCCCCCeEEccCCcCcccCCCCC-----CCccCcceeeccCCcccCCCCccccC---CCCccEEeccCC
Q 038858 393 EI----PQSLSKCLSLEGLHLNNNNLSGKIPQWL-----GNLTGLQYIIIPENHLEGPIPVAFCQ---LDSLQILGISDN 460 (740)
Q Consensus 393 ~~----~~~~~~l~~L~~L~l~~n~i~~~~~~~l-----~~l~~L~~L~l~~n~~~~~~~~~~~~---~~~L~~L~l~~n 460 (740)
.. +.. ...++|++|++++|.+.+.+|..+ ..++.|+.+++..+.+ ......+.. ..+|+.|++++|
T Consensus 264 ~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n 341 (562)
T 3a79_B 264 KCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDT 341 (562)
T ss_dssp HHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESS
T ss_pred HHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCC
Confidence 21 111 123477888888888776666665 5566666666666665 122122222 256888999888
Q ss_pred cCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCC--CCcccccccch
Q 038858 461 NISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLI--PPCFDNTALHE 538 (740)
Q Consensus 461 ~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~~~ 538 (740)
.+... + ....+++|++|++++|.+++..|..+..+++|+.|++++|++++.. |..+..
T Consensus 342 ~~~~~--------------~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~----- 401 (562)
T 3a79_B 342 PFIHM--------------V-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN----- 401 (562)
T ss_dssp CCCCC--------------C-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTT-----
T ss_pred Ccccc--------------c-CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcC-----
Confidence 87521 1 1146788999999999998888888899999999999999888643 233444
Q ss_pred hhhccccceEEccCccccccCC-cCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCC
Q 038858 539 RRVLSLLSGIDLSCNKLIGDIP-PQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNAL 617 (740)
Q Consensus 539 ~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 617 (740)
+++|+.|++++|.+++.+| ..+..+++|++|++++|++++..+..+. ++|++|++++|+++ .+|..+..+++|
T Consensus 402 ---l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L 475 (562)
T 3a79_B 402 ---MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQAL 475 (562)
T ss_dssp ---CTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCC
T ss_pred ---CCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCC
Confidence 6789999999999987444 4588899999999999999876666554 79999999999998 677777799999
Q ss_pred CEEEccCCcccccCCCCCccccCCCccccCCCCCCCCCCC
Q 038858 618 VVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPL 657 (740)
Q Consensus 618 ~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~ 657 (740)
++|++++|++++..+..+..+++++.+++++|||.|+|+.
T Consensus 476 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 476 QELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp SEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred CEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 9999999999966555578899999999999999999974
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.8e-42 Score=391.27 Aligned_cols=381 Identities=17% Similarity=0.181 Sum_probs=315.3
Q ss_pred CchhhcCCCCCCEEEccCCCCcc-----------------cCchHh-hhcCCCCCEEeccCCcccCCCCCCCCCCCCcCE
Q 038858 223 FPKFLHHQNKLEDVDLSHIKMNG-----------------EFPNWL-LENNTKLESLSLVNDSLAGPFRLPIHSHKSLRL 284 (740)
Q Consensus 223 ~~~~l~~~~~L~~L~l~~~~~~~-----------------~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 284 (740)
+|..++.+++|+.|++++|.+++ .+|..+ +.++++|++|++++|.+.+..+..+..+++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 78888899999999999999987 377775 238999999999999998888888999999999
Q ss_pred EeccCCc-Ccc-cCChhHhh------cCCCCcEEEccCCcCcccCCc--cccCCCCCcEEEeecccCCCccChhhhhcCc
Q 038858 285 LDVSNNN-FQG-RIPAEIGD------ILPSLSSFNISMNALDGSIPS--SFGNMNFLQILDLSNNHLTGEIPEHLAIGCV 354 (740)
Q Consensus 285 L~l~~n~-l~~-~~~~~~~~------~~~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 354 (740)
|++++|+ +++ .+|..+.. .+++|++|++++|.++ .+|. .+.++++|+.|++++|.++ .+| .+..++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~ 595 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNV 595 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTS
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCC
Confidence 9999998 887 78877654 2459999999999999 7888 8999999999999999998 888 445799
Q ss_pred cCcEEEcCCccccccCCcCCCCCCC-CCeEEccCCcccccCccccccCCC--CCeEEccCCcCcccCCCCC---C--Ccc
Q 038858 355 NLEILVLSNNNLEGHMFSKNFNLTK-LSWLLLEDNHFVEEIPQSLSKCLS--LEGLHLNNNNLSGKIPQWL---G--NLT 426 (740)
Q Consensus 355 ~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~l~~--L~~L~l~~n~i~~~~~~~l---~--~l~ 426 (740)
+|+.|++++|.+. ..+..+..+++ |+.|++++|++. .+|..+..++. |+.|++++|.+.+.+|... . .++
T Consensus 596 ~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 596 KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred cceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 9999999999998 56667888888 999999999988 66776766544 9999999999987655322 2 345
Q ss_pred CcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEccccccccccccc
Q 038858 427 GLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQ 506 (740)
Q Consensus 427 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 506 (740)
+|+.|++++|.++...+..+..+++|+.|++++|++. .+|..... ..+..+.++++|+.|++++|.++ .+|..
T Consensus 674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~-----~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~ 746 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLK-----PKDGNYKNTYLLTTIDLRFNKLT-SLSDD 746 (876)
T ss_dssp CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSS-----CTTSCCTTGGGCCEEECCSSCCC-CCCGG
T ss_pred CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhc-----cccccccccCCccEEECCCCCCc-cchHH
Confidence 8999999999999555555668999999999999987 34332110 01112345669999999999999 67777
Q ss_pred cc--CCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccC------ccccccCCcCccCCCcCcEEeCcCCc
Q 038858 507 LC--GLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSC------NKLIGDIPPQIGNLTRIQTLNLSHNN 578 (740)
Q Consensus 507 l~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~------n~l~~~~~~~~~~l~~L~~L~L~~n~ 578 (740)
+. .+++|+.|+|++|++++ +|..+.. +++|+.|++++ |.+.+.+|..+..+++|+.|+|++|+
T Consensus 747 l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~--------L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYNCFSS-FPTQPLN--------SSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp GSTTTCTTCCEEECCSSCCSS-CCCGGGG--------CTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred hhhccCCCcCEEEeCCCCCCc-cchhhhc--------CCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC
Confidence 76 89999999999999997 5666655 68999999976 88888999999999999999999999
Q ss_pred CCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCccc
Q 038858 579 LTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLS 628 (740)
Q Consensus 579 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 628 (740)
+ +.+|..+. ++|+.|||++|++....+..+.....+..+.+.+|++.
T Consensus 818 L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 818 I-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp C-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred C-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 9 57777765 69999999999999877777777666777788888765
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.2e-39 Score=355.01 Aligned_cols=372 Identities=22% Similarity=0.233 Sum_probs=311.4
Q ss_pred CEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcc-cCCccccCCCCCcEEEee
Q 038858 259 ESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDG-SIPSSFGNMNFLQILDLS 337 (740)
Q Consensus 259 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~ 337 (740)
+.++.+++.++.... -.++|++|++++|.+++..|..+.. +++|++|++++|.+.+ ..+..|.++++|++|+++
T Consensus 13 ~~~~c~~~~l~~lp~----l~~~l~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLHQVPE----LPAHVNYVDLSLNSIAELNETSFSR-LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCSSCCC----CCTTCCEEECCSSCCCEECTTTTSS-CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcccCCC----CCCccCEEEecCCccCcCChhHhcc-CccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 456667777665433 2378999999999998555555554 8999999999999874 446789999999999999
Q ss_pred cccCCCccChhhhhcCccCcEEEcCCccccccCCc--CCCCCCCCCeEEccCCcccccCccc-cccCCCCCeEEccCCcC
Q 038858 338 NNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFS--KNFNLTKLSWLLLEDNHFVEEIPQS-LSKCLSLEGLHLNNNNL 414 (740)
Q Consensus 338 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~i 414 (740)
+|.+++..|.. +.++++|++|++++|.+.+..+. .+..+++|++|++++|.+.+..|.. +..+++|++|++++|.+
T Consensus 88 ~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 88 YNQFLQLETGA-FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TCTTCEECTTT-TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCccCccChhh-ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 99998444544 45899999999999999874433 4888999999999999998887765 78999999999999999
Q ss_pred cccCCCCCCCc--cCcceeeccCCcccCCCCcc--------ccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhh
Q 038858 415 SGKIPQWLGNL--TGLQYIIIPENHLEGPIPVA--------FCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRID 484 (740)
Q Consensus 415 ~~~~~~~l~~l--~~L~~L~l~~n~~~~~~~~~--------~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~ 484 (740)
.+..+..+..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|++.+ ..|..+.
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-------------~~~~~~~ 233 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE-------------SMAKRFF 233 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH-------------HHHHHHH
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccc-------------cchhhhh
Confidence 98888877766 78999999999988665443 2356899999999998873 4445554
Q ss_pred cc---ccCcEEEcccccccccc----------ccccc--CCCcccEEeCCCccccCCCCCcccccccchhhhccccceEE
Q 038858 485 GL---LRLSHLILAHNNLEGEV----------PVQLC--GLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGID 549 (740)
Q Consensus 485 ~l---~~L~~L~L~~n~l~~~~----------~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 549 (740)
.. ++|+.|++++|...+.. +..+. ..++|+.|++++|.+.+..|..+.. +++|+.|+
T Consensus 234 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~ 305 (455)
T 3v47_A 234 DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH--------FTDLEQLT 305 (455)
T ss_dssp HHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT--------CTTCCEEE
T ss_pred ccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhccc--------CCCCCEEE
Confidence 43 88999999998654321 11222 2368999999999999888888877 67999999
Q ss_pred ccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccc
Q 038858 550 LSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSG 629 (740)
Q Consensus 550 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 629 (740)
+++|.+.+..|..|..+++|++|+|++|.+++..+..|..+++|++|++++|++++..|..+..+++|++|++++|++++
T Consensus 306 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 306 LAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS 385 (455)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcccc
Confidence 99999999889999999999999999999999889999999999999999999998889999999999999999999999
Q ss_pred cCCCCCccccCCCccccCCCCCCCCCCC
Q 038858 630 KIPEMTTQFATFNESNYKGNPFLCGLPL 657 (740)
Q Consensus 630 ~~~~~~~~~~~l~~~~~~~Np~~C~~~~ 657 (740)
..+..+..+++|+.+++++||+.|+|+.
T Consensus 386 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 386 VPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCHhHhccCCcccEEEccCCCcccCCCc
Confidence 8888888999999999999999999983
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.2e-39 Score=364.02 Aligned_cols=458 Identities=18% Similarity=0.174 Sum_probs=244.4
Q ss_pred CCCEEEcCCCCCCCcCCCCCCCCCCCCCEEecCCCccccCccchHHHhccCCCCcEEEccCcccccCCCCCCccccCCCC
Q 038858 58 SLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLV 137 (740)
Q Consensus 58 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~ 137 (740)
..++++++++.++ .+|.. +. ++|++|++++|. +.+..+..+.. +++|++|++++|.++ .++++.|.+++
T Consensus 32 ~~~~l~ls~~~L~-~ip~~-~~--~~L~~L~Ls~N~--i~~~~~~~~~~-l~~L~~L~Ls~N~l~----~~~~~~~~~l~ 100 (562)
T 3a79_B 32 LESMVDYSNRNLT-HVPKD-LP--PRTKALSLSQNS--ISELRMPDISF-LSELRVLRLSHNRIR----SLDFHVFLFNQ 100 (562)
T ss_dssp -CCEEECTTSCCC-SCCTT-SC--TTCCEEECCSSC--CCCCCGGGTTT-CTTCCEEECCSCCCC----EECTTTTTTCT
T ss_pred CCcEEEcCCCCCc-cCCCC-CC--CCcCEEECCCCC--ccccChhhhcc-CCCccEEECCCCCCC----cCCHHHhCCCC
Confidence 3456666666665 34432 22 566666666663 23333334444 666666666666655 33333566666
Q ss_pred CCCEEEccCCccccccCccccCCCCCCEEEccCCcCccccCCCchhhcccccccchhcccccCCCCCCccccEEEccCCC
Q 038858 138 HLQELHMANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGY 217 (740)
Q Consensus 138 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 217 (740)
+|++|++++|+++ .+|.. .+++|++|++++|.+.+.
T Consensus 101 ~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l----------------------------------------- 136 (562)
T 3a79_B 101 DLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVL----------------------------------------- 136 (562)
T ss_dssp TCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBC-----------------------------------------
T ss_pred CCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCcccc-----------------------------------------
Confidence 6666666666666 34433 566666666666665421
Q ss_pred CCCCCCchhhcCCCCCCEEEccCCCCcccCchHhhhcCCCC--CEEeccCCcc--cCCCCCCCCCCC-CcCEEeccCCcC
Q 038858 218 EDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKL--ESLSLVNDSL--AGPFRLPIHSHK-SLRLLDVSNNNF 292 (740)
Q Consensus 218 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~l~~~~-~L~~L~l~~n~l 292 (740)
..|..++.+++|+.|++++|.+.+.. +..+++| ++|++++|.+ .+..+..+..+. ..-.+++++|.+
T Consensus 137 ----~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~ 208 (562)
T 3a79_B 137 ----PVCKEFGNLTKLTFLGLSAAKFRQLD----LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL 208 (562)
T ss_dssp ----CCCGGGGGCTTCCEEEEECSBCCTTT----TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSC
T ss_pred ----CchHhhcccCcccEEecCCCccccCc----hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccc
Confidence 11223444555566666655554321 1233444 6666666655 444443333322 111456666766
Q ss_pred cccCChhHhhcCCCCcEEEccCCcCc----ccCCccccCCCCCcEEEeecccCCCccChhhh--hcCccCcEEEcCCccc
Q 038858 293 QGRIPAEIGDILPSLSSFNISMNALD----GSIPSSFGNMNFLQILDLSNNHLTGEIPEHLA--IGCVNLEILVLSNNNL 366 (740)
Q Consensus 293 ~~~~~~~~~~~~~~L~~L~l~~n~~~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~~l~~L~~L~L~~n~l 366 (740)
.+.++...+..+++|+.+++++|... ......+.+++.|+.++++++.+.+....... ...++|++|++++|.+
T Consensus 209 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 288 (562)
T 3a79_B 209 FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTI 288 (562)
T ss_dssp CCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEE
T ss_pred hhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEe
Confidence 65555555555667777777776421 11223466777777777777766532111111 1234777888888777
Q ss_pred cccCCcCC-----CCCCCCCeEEccCCcccccCc-cccc---cCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCc
Q 038858 367 EGHMFSKN-----FNLTKLSWLLLEDNHFVEEIP-QSLS---KCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENH 437 (740)
Q Consensus 367 ~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~-~~~~---~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~ 437 (740)
.+..+..+ ..++.|+.+++..+.+ ..| ..+. ...+|++|++++|.+.... ....+++|++|++++|.
T Consensus 289 ~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~ 364 (562)
T 3a79_B 289 TERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNV 364 (562)
T ss_dssp CSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSC
T ss_pred eccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCc
Confidence 75555544 3444444455555544 222 1111 2256777888777764221 12456777777777777
Q ss_pred ccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccc-cccccccCCCcccEE
Q 038858 438 LEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEG-EVPVQLCGLNQLQLL 516 (740)
Q Consensus 438 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L 516 (740)
+++..+..+..+++|++|++++|++++.. ..|..+..+++|++|++++|.+++ ..+..+..+++|+.|
T Consensus 365 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L 433 (562)
T 3a79_B 365 FTDSVFQGCSTLKRLQTLILQRNGLKNFF-----------KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433 (562)
T ss_dssp CCTTTTTTCCSCSSCCEEECCSSCCCBTT-----------HHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEE
T ss_pred cccchhhhhcccCCCCEEECCCCCcCCcc-----------cchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEE
Confidence 77666666777777777777777665210 123345556666666666666655 222335555556666
Q ss_pred eCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEE
Q 038858 517 DLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESL 596 (740)
Q Consensus 517 ~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 596 (740)
++++|++++..|.. +. ++|++|+|++|+++ .+|..+..+++|++|
T Consensus 434 ~l~~n~l~~~~~~~--------------------------------l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L 478 (562)
T 3a79_B 434 NLSSNMLTGSVFRC--------------------------------LP--PKVKVLDLHNNRIM-SIPKDVTHLQALQEL 478 (562)
T ss_dssp ECCSSCCCGGGGSS--------------------------------CC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEE
T ss_pred ECCCCCCCcchhhh--------------------------------hc--CcCCEEECCCCcCc-ccChhhcCCCCCCEE
Confidence 66655554433322 22 34555555555555 233333355555555
Q ss_pred ECCCCcCCccCchh-hhcCCCCCEEEccCCcccc
Q 038858 597 DLYHNKLNGKIPCQ-LVELNALVVFSVAYNNLSG 629 (740)
Q Consensus 597 ~Ls~N~l~~~~~~~-~~~l~~L~~L~l~~N~l~~ 629 (740)
++++|+++ .+|.. +..+++|+.|++++|++.+
T Consensus 479 ~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 479 NVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp ECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred ECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCC
Confidence 55555555 23332 5555555555555555554
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=8.4e-39 Score=348.36 Aligned_cols=383 Identities=19% Similarity=0.197 Sum_probs=297.4
Q ss_pred EEEccCCCCcccCchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccC
Q 038858 235 DVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISM 314 (740)
Q Consensus 235 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~ 314 (740)
.++.+++.++ .+|. + .++|++|++++|.+.+..+..+..+++|++|++++|.+.+.++...+..+++|++|++++
T Consensus 14 ~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 14 NAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp EEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 4555555554 4443 1 256777777777777766667777777788888777776566555555577888888888
Q ss_pred CcCcccCCccccCCCCCcEEEeecccCCCccCh-hhhhcCccCcEEEcCCccccccCCcC-CCCCCCCCeEEccCCcccc
Q 038858 315 NALDGSIPSSFGNMNFLQILDLSNNHLTGEIPE-HLAIGCVNLEILVLSNNNLEGHMFSK-NFNLTKLSWLLLEDNHFVE 392 (740)
Q Consensus 315 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~ 392 (740)
|.+++..|..|.++++|++|++++|.+++.++. ..+..+++|++|++++|.+.+..+.. +..+++|++|++++|++.+
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 887777777788888888888888877643332 23446778888888888877765554 6677888888888888877
Q ss_pred cCccccccC--CCCCeEEccCCcCcccCCCC--------CCCccCcceeeccCCcccCCCCccccCC---CCccEEeccC
Q 038858 393 EIPQSLSKC--LSLEGLHLNNNNLSGKIPQW--------LGNLTGLQYIIIPENHLEGPIPVAFCQL---DSLQILGISD 459 (740)
Q Consensus 393 ~~~~~~~~l--~~L~~L~l~~n~i~~~~~~~--------l~~l~~L~~L~l~~n~~~~~~~~~~~~~---~~L~~L~l~~ 459 (740)
..+..+..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|.+.+..+..+... .+|+.|++++
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 766666654 67888888888877544433 2356789999999998887766665443 7899999999
Q ss_pred CcCCCCCCCCCCCCcCCccCchhhhcc--ccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccc
Q 038858 460 NNISGSLPSYLSYNRLNGSIPDRIDGL--LRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALH 537 (740)
Q Consensus 460 n~l~~~~~~~l~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 537 (740)
|...+.. +..+.+.+..+..+..+ ++|+.|++++|.+.+..+..++.+++|++|++++|.+.+..|..|..
T Consensus 249 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---- 321 (455)
T 3v47_A 249 SYNMGSS---FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG---- 321 (455)
T ss_dssp CTTTSCC---TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT----
T ss_pred ccccccc---cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC----
Confidence 8776432 22233333333344443 68999999999999999999999999999999999999888888876
Q ss_pred hhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCC
Q 038858 538 ERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNAL 617 (740)
Q Consensus 538 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 617 (740)
+++|+.|++++|.+.+..|..|..+++|++|+|++|++++..|..|..+++|++|++++|++++..+..+..+++|
T Consensus 322 ----l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 397 (455)
T 3v47_A 322 ----LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSL 397 (455)
T ss_dssp ----CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred ----cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcc
Confidence 6799999999999998888999999999999999999999889999999999999999999998777778999999
Q ss_pred CEEEccCCcccccCCC
Q 038858 618 VVFSVAYNNLSGKIPE 633 (740)
Q Consensus 618 ~~L~l~~N~l~~~~~~ 633 (740)
++|++++|++++..|.
T Consensus 398 ~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 398 QKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CEEECCSSCBCCCTTT
T ss_pred cEEEccCCCcccCCCc
Confidence 9999999999988875
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.7e-37 Score=334.41 Aligned_cols=283 Identities=29% Similarity=0.380 Sum_probs=110.2
Q ss_pred CCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEc
Q 038858 306 SLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLL 385 (740)
Q Consensus 306 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 385 (740)
+|++|++++|.+++ +| .|.++++|++|++++|+++ .+|.. .++|++|++++|.+.+.. .+..+++|++|++
T Consensus 132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l 202 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYA 202 (454)
T ss_dssp TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEEC
T ss_pred CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEEECcCCcCCcCc--cccCCCCCCEEEC
Confidence 44455555544443 33 2444455555555555444 23321 234555555555444421 3444555555555
Q ss_pred cCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCC
Q 038858 386 EDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGS 465 (740)
Q Consensus 386 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 465 (740)
++|++.+. |.. .++|++|++++|.+. .+| .+..+++|++|++++|++++. |. .+++|+.|++++|++.+
T Consensus 203 ~~N~l~~l-~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~- 271 (454)
T 1jl5_A 203 DNNSLKKL-PDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTD- 271 (454)
T ss_dssp CSSCCSSC-CCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSC-
T ss_pred CCCcCCcC-CCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccc-
Confidence 55544431 111 134555555555544 333 244455555555555554432 21 12445555555555441
Q ss_pred CCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhcccc
Q 038858 466 LPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLL 545 (740)
Q Consensus 466 ~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L 545 (740)
+|.. .++|++|++++|.+++... ..++|+.|++++|++++... + .++|
T Consensus 272 -------------l~~~---~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~i~~--~----------~~~L 319 (454)
T 1jl5_A 272 -------------LPEL---PQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSLCD--L----------PPSL 319 (454)
T ss_dssp -------------CCCC---CTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSEECC--C----------CTTC
T ss_pred -------------cCcc---cCcCCEEECcCCccCcccC----cCCcCCEEECcCCcCCcccC--C----------cCcC
Confidence 1111 1345555555555543110 01345555555555443110 0 1245
Q ss_pred ceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCc--cCchhhhcC---------
Q 038858 546 SGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNG--KIPCQLVEL--------- 614 (740)
Q Consensus 546 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l--------- 614 (740)
+.|++++|++++ +|.. +++|++|++++|++++ +|. .+++|++|++++|++++ .+|..+..+
T Consensus 320 ~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i 391 (454)
T 1jl5_A 320 EELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEV 391 (454)
T ss_dssp CEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----
T ss_pred CEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccccccc
Confidence 555555555553 3322 3455555555555553 222 24555555555555554 444444444
Q ss_pred ----CCCCEEEccCCcccc--cCCCCCccccCCCccccCCCCCCCC
Q 038858 615 ----NALVVFSVAYNNLSG--KIPEMTTQFATFNESNYKGNPFLCG 654 (740)
Q Consensus 615 ----~~L~~L~l~~N~l~~--~~~~~~~~~~~l~~~~~~~Np~~C~ 654 (740)
++|++|++++|++++ .+|. ++..+.+.+|.+.|.
T Consensus 392 ~~~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~ 431 (454)
T 1jl5_A 392 PELPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDP 431 (454)
T ss_dssp ----------------------------------------------
T ss_pred ccccCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCc
Confidence 789999999999987 4443 355666777766654
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.7e-36 Score=330.27 Aligned_cols=321 Identities=19% Similarity=0.191 Sum_probs=211.7
Q ss_pred CEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcC
Q 038858 283 RLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLS 362 (740)
Q Consensus 283 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 362 (740)
+.++.+++.++ .+|..+ .+++++|++++|.+++..+..|.++++|++|++++|.++ .++...+.++++|++|+++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECC
Confidence 56788887777 677654 357888888888888777788888888888888888887 4433344477888888888
Q ss_pred CccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCC
Q 038858 363 NNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPI 442 (740)
Q Consensus 363 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 442 (740)
+|.+.......|.++++|++|++++|++.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 88877766666777777777777777777776777777777777777777777666667777777777777777776655
Q ss_pred CccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCcc
Q 038858 443 PVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNK 522 (740)
Q Consensus 443 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 522 (740)
+..+..+++|+.|++++|.+.+ ..+..|..+++|+.|++++|...+..+.......+|+.|++++|.
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~-------------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 235 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINA-------------IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCE-------------ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC
T ss_pred hhHhcccCCCcEEeCCCCcCcE-------------eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc
Confidence 5566667777777777666652 223345556666666666665554554444444566666666666
Q ss_pred ccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCc
Q 038858 523 LHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNK 602 (740)
Q Consensus 523 l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 602 (740)
+++..+..+.. +++|+.|++++|.+.+..+..|..+++|+.|+|++|++++..+..|..+++|++|++++|+
T Consensus 236 l~~~~~~~~~~--------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 236 LTAVPYLAVRH--------LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp CCSCCHHHHTT--------CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred ccccCHHHhcC--------ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 65433333333 4456666666666655555555566666666666666665555566666666666666666
Q ss_pred CCccCchhhhcCCCCCEEEccCCcccc
Q 038858 603 LNGKIPCQLVELNALVVFSVAYNNLSG 629 (740)
Q Consensus 603 l~~~~~~~~~~l~~L~~L~l~~N~l~~ 629 (740)
+++..+..|..+++|++|++++|++.+
T Consensus 308 l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 308 LTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred CceeCHhHcCCCcccCEEEccCCCccC
Confidence 655555555555566666666665553
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.3e-36 Score=327.47 Aligned_cols=321 Identities=24% Similarity=0.338 Sum_probs=187.8
Q ss_pred CCCCEEEccCCCCcccCchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcEE
Q 038858 231 NKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSF 310 (740)
Q Consensus 231 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 310 (740)
++|+.|++++|.+++ ++. ..++|++|++++|.+++ .+ .+..+++|++|++++|.++ .+|.. .++|++|
T Consensus 111 ~~L~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L 178 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKA-LSD----LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFI 178 (454)
T ss_dssp TTCCEEECCSSCCSC-CCS----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEE
T ss_pred CCCcEEECCCCccCc-ccC----CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEE
Confidence 577788888887764 322 12688888888888887 33 5888899999999999888 46643 4589999
Q ss_pred EccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcc
Q 038858 311 NISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHF 390 (740)
Q Consensus 311 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 390 (740)
++++|.+++ +| .+.++++|++|++++|.++ .+|.. .++|++|++++|.+.... .+..+++|++|++++|++
T Consensus 179 ~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 179 AAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLL 249 (454)
T ss_dssp ECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCC
T ss_pred ECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC-cCCCC----cCcccEEECcCCcCCccc--ccCCCCCCCEEECCCCcC
Confidence 999998885 55 5888899999999999887 45542 357888888888887433 377788888888888887
Q ss_pred cccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCC
Q 038858 391 VEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYL 470 (740)
Q Consensus 391 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 470 (740)
.+. |. ..++|++|++++|.+.+ +|.. .++|+.|++++|.+++... ..++|+.|++++|++++
T Consensus 250 ~~l-~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~------ 311 (454)
T 1jl5_A 250 KTL-PD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRS------ 311 (454)
T ss_dssp SSC-CS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSE------
T ss_pred Ccc-cc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccC----cCCcCCEEECcCCcCCc------
Confidence 653 32 23678888888888774 4432 3678888888887775211 12577788888777762
Q ss_pred CCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEc
Q 038858 471 SYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDL 550 (740)
Q Consensus 471 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 550 (740)
++. -.++|++|++++|.+++ +|.. +++|++|++++|.+++. |. . +++|+.|++
T Consensus 312 --------i~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~l-p~-~----------l~~L~~L~L 364 (454)
T 1jl5_A 312 --------LCD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEV-PE-L----------PQNLKQLHV 364 (454)
T ss_dssp --------ECC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC-C----------CTTCCEEEC
T ss_pred --------ccC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccc-cc-h----------hhhccEEEC
Confidence 111 01467778888777774 3332 46777777777777643 32 1 357777777
Q ss_pred cCccccc--cCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCc--cCchhhhcCCCCCEEEccCCc
Q 038858 551 SCNKLIG--DIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNG--KIPCQLVELNALVVFSVAYNN 626 (740)
Q Consensus 551 ~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~l~~N~ 626 (740)
++|++++ .+|..+.. ++.|.+.+.+|.. +++|+.|++++|++++ .+|. +++.|.+.+|.
T Consensus 365 ~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~ 427 (454)
T 1jl5_A 365 EYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE------SVEDLRMNSER 427 (454)
T ss_dssp CSSCCSSCCCCCTTCCE--------EECCC--------------------------------------------------
T ss_pred CCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCccccchh------hHhheeCcCcc
Confidence 7777776 44443332 2235555544442 4889999999999986 4553 46777889998
Q ss_pred ccccCCCC
Q 038858 627 LSGKIPEM 634 (740)
Q Consensus 627 l~~~~~~~ 634 (740)
+.+..|..
T Consensus 428 ~~~~~~~~ 435 (454)
T 1jl5_A 428 VVDPYEFA 435 (454)
T ss_dssp --------
T ss_pred cCCccccC
Confidence 88766654
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.1e-36 Score=329.79 Aligned_cols=323 Identities=25% Similarity=0.249 Sum_probs=255.3
Q ss_pred CEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeec
Q 038858 259 ESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSN 338 (740)
Q Consensus 259 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 338 (740)
+.++.+++.++.+.. .+ .+++++|++++|.+++..+.. +..+++|++|++++|.+++..|..|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~~ip~-~~--~~~l~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFVAVPE-GI--PTETRLLDLGKNRIKTLNQDE-FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCSSCCS-CC--CTTCSEEECCSSCCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCcCCC-CC--CCCCcEEECCCCccceECHhH-ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 456666666664332 22 367888888888888433444 44488888888888888887788888888888888888
Q ss_pred ccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccC
Q 038858 339 NHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKI 418 (740)
Q Consensus 339 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~ 418 (740)
|.++ .++...+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..
T Consensus 90 n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 90 NRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp SCCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CcCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 8887 677666667888888888888888877778888888888888888888877778888888888888888887665
Q ss_pred CCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEccccc
Q 038858 419 PQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNN 498 (740)
Q Consensus 419 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 498 (740)
+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|...+.+| .......+|++|++++|.
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-------------~~~~~~~~L~~L~l~~n~ 235 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT-------------PNCLYGLNLTSLSITHCN 235 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC-------------TTTTTTCCCSEEEEESSC
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccC-------------cccccCccccEEECcCCc
Confidence 5667788888888888888887777788888888888888887654332 223334588888888888
Q ss_pred ccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCc
Q 038858 499 LEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNN 578 (740)
Q Consensus 499 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 578 (740)
+++..+..+..+++|+.|++++|.+.+..+..|.. +++|+.|++++|++.+..|..|..+++|+.|+|++|+
T Consensus 236 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 236 LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE--------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT--------CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred ccccCHHHhcCccccCeeECCCCcCCccChhhccc--------cccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 88666677888888888888888888777766665 5688888888888888888888888888888888888
Q ss_pred CCCccchhccCcCCCcEEECCCCcCCccC
Q 038858 579 LTGTILSTFTNLRHIESLDLYHNKLNGKI 607 (740)
Q Consensus 579 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 607 (740)
+++..+..|..+++|++|++++|++....
T Consensus 308 l~~~~~~~~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 308 LTTLEESVFHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp CSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred CceeCHhHcCCCcccCEEEccCCCccCcc
Confidence 88877788888888888888888887443
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.2e-34 Score=312.16 Aligned_cols=346 Identities=25% Similarity=0.382 Sum_probs=267.0
Q ss_pred CCCCCEEEccCCCCcccCchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcE
Q 038858 230 QNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSS 309 (740)
Q Consensus 230 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 309 (740)
+++++.|+++++.+. .+|. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+ ++. +..+++|++
T Consensus 45 l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITP--LANLTNLTG 116 (466)
T ss_dssp HHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG--GTTCTTCCE
T ss_pred hccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc-Chh--hcCCCCCCE
Confidence 457888888888776 3454 3678888888888888876544 7788888888888888873 443 334788888
Q ss_pred EEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCc
Q 038858 310 FNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNH 389 (740)
Q Consensus 310 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 389 (740)
|++++|.+++..+ +..+++|++|++++|.+. .++. +..+++|++|+++ +.+.+.. .+..+++|++|++++|.
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNK 188 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSC
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccC-CChh--hccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCc
Confidence 8888888875433 788888888888888887 4443 3468888888886 4444332 36778888888888888
Q ss_pred ccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCC
Q 038858 390 FVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSY 469 (740)
Q Consensus 390 ~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 469 (740)
+... ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~----- 257 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN----- 257 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-----
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCcccc-----
Confidence 7654 347788889999999888875544 66788889999988888754 457788889999999888762
Q ss_pred CCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEE
Q 038858 470 LSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGID 549 (740)
Q Consensus 470 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 549 (740)
.+. +..+++|++|++++|.+++..+ +..+++|+.|++++|++.+..+ +.. +++|+.|+
T Consensus 258 ---------~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~--------l~~L~~L~ 315 (466)
T 1o6v_A 258 ---------LAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN--------LKNLTYLT 315 (466)
T ss_dssp ---------CGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGG--------CTTCSEEE
T ss_pred ---------chh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcC--------CCCCCEEE
Confidence 222 6778889999999998886544 7788889999999998876543 333 67889999
Q ss_pred ccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccc
Q 038858 550 LSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSG 629 (740)
Q Consensus 550 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 629 (740)
+++|.+++..| +..+++|+.|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 316 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 99998886654 67888999999999988874 578888999999999999987766 7888899999999998887
Q ss_pred c
Q 038858 630 K 630 (740)
Q Consensus 630 ~ 630 (740)
.
T Consensus 390 ~ 390 (466)
T 1o6v_A 390 A 390 (466)
T ss_dssp C
T ss_pred C
Confidence 4
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.4e-34 Score=315.01 Aligned_cols=347 Identities=25% Similarity=0.350 Sum_probs=296.8
Q ss_pred hcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCc
Q 038858 253 ENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQ 332 (740)
Q Consensus 253 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 332 (740)
..++++++|++.++.+.... .+..+++|++|++++|.+. .++. +..+++|++|++++|.+++..+ +.++++|+
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 115 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLT 115 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred hHhccccEEecCCCCCccCc--chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCCC
Confidence 34678999999999987643 4778999999999999998 4554 4458999999999999986544 99999999
Q ss_pred EEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCC
Q 038858 333 ILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNN 412 (740)
Q Consensus 333 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 412 (740)
+|++++|.++ .++. +..+++|++|++++|.+.+.. .+..+++|+.|+++ +.+.... .+..+++|++|++++|
T Consensus 116 ~L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 116 GLTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSN 187 (466)
T ss_dssp EEECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSS
T ss_pred EEECCCCCCC-CChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCC
Confidence 9999999998 5554 458999999999999988753 47889999999997 4444332 3889999999999999
Q ss_pred cCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEE
Q 038858 413 NLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHL 492 (740)
Q Consensus 413 ~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L 492 (740)
.+.+. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+. .+ ..+..+++|+.|
T Consensus 188 ~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~--------------~~-~~l~~l~~L~~L 248 (466)
T 1o6v_A 188 KVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK--------------DI-GTLASLTNLTDL 248 (466)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC--------------CC-GGGGGCTTCSEE
T ss_pred cCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc--------------cc-hhhhcCCCCCEE
Confidence 98753 347889999999999999987655 778999999999999986 22 357889999999
Q ss_pred EcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEE
Q 038858 493 ILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTL 572 (740)
Q Consensus 493 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 572 (740)
++++|.+++..+ +..+++|+.|++++|.+.+..+ +.. +++|+.|++++|++.+..+ +..+++|+.|
T Consensus 249 ~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~--------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 314 (466)
T 1o6v_A 249 DLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG--------LTALTNLELNENQLEDISP--ISNLKNLTYL 314 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTT--------CTTCSEEECCSSCCSCCGG--GGGCTTCSEE
T ss_pred ECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccC--------CCccCeEEcCCCcccCchh--hcCCCCCCEE
Confidence 999999986655 8899999999999999986544 433 6799999999999996544 8899999999
Q ss_pred eCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCC
Q 038858 573 NLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFL 652 (740)
Q Consensus 573 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~ 652 (740)
++++|++++..+ +..+++|++|++++|++++. ..+..+++|+.|++++|++++..| +..+++++.+++++|+|.
T Consensus 315 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 315 TLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp ECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred ECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence 999999998665 78999999999999999865 468899999999999999999887 688999999999999988
Q ss_pred C
Q 038858 653 C 653 (740)
Q Consensus 653 C 653 (740)
.
T Consensus 389 ~ 389 (466)
T 1o6v_A 389 N 389 (466)
T ss_dssp C
T ss_pred C
Confidence 6
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.4e-34 Score=306.02 Aligned_cols=334 Identities=21% Similarity=0.251 Sum_probs=200.6
Q ss_pred CCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcE
Q 038858 279 HKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEI 358 (740)
Q Consensus 279 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 358 (740)
+++++.|+++++.+. .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.++ .++...+.++++|++
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCE
Confidence 467788888888776 677776666888888888888888777777888888888888888887 454444456777888
Q ss_pred EEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcc
Q 038858 359 LVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHL 438 (740)
Q Consensus 359 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~ 438 (740)
|++++|.+.......+..+++|++|++++|++.+..+..+..+++|++|++++|.+++. .+..+++|+.|++++|.+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 88887777766555566777777777777777766666677777777777777776643 244556667777766665
Q ss_pred cCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeC
Q 038858 439 EGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDL 518 (740)
Q Consensus 439 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 518 (740)
++ +...++|++|++++|.+.. +|.. ..++|+.|++++|.+++. ..+..+++|++|++
T Consensus 199 ~~-----~~~~~~L~~L~l~~n~l~~--------------~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 255 (390)
T 3o6n_A 199 ST-----LAIPIAVEELDASHNSINV--------------VRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDL 255 (390)
T ss_dssp SE-----EECCSSCSEEECCSSCCCE--------------EECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred cc-----cCCCCcceEEECCCCeeee--------------cccc--ccccccEEECCCCCCccc--HHHcCCCCccEEEC
Confidence 52 2234466666666666541 1111 124566666666655532 34555555555555
Q ss_pred CCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEEC
Q 038858 519 SDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDL 598 (740)
Q Consensus 519 ~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 598 (740)
++|.+.+..|..+.. +++|+.|++++|++++ +|..+..+++|++|+|++|++++ +|..+..+++|++|++
T Consensus 256 s~n~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L 325 (390)
T 3o6n_A 256 SYNELEKIMYHPFVK--------MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYL 325 (390)
T ss_dssp CSSCCCEEESGGGTT--------CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEEC
T ss_pred CCCcCCCcChhHccc--------cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEEC
Confidence 555555444444433 3455555555555543 23334445555555555555552 3344455555555555
Q ss_pred CCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCCCCC
Q 038858 599 YHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGL 655 (740)
Q Consensus 599 s~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~ 655 (740)
++|+++.. + +..+++|+.|++++|++.+.... ..+..+....+.+++..|.+
T Consensus 326 ~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 326 DHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp CSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCCCSCCCT
T ss_pred CCCcccee-C--chhhccCCEEEcCCCCccchhHH--HHHHHHHhhcccccCceecc
Confidence 55555532 2 34455555555555555542111 12233344445555555544
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.3e-34 Score=302.78 Aligned_cols=315 Identities=19% Similarity=0.173 Sum_probs=273.2
Q ss_pred CCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeE
Q 038858 304 LPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWL 383 (740)
Q Consensus 304 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 383 (740)
+++++.|++++|.++...+..|..+++|++|++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 679999999999999766666899999999999999998 6666556689999999999999999888889999999999
Q ss_pred EccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCC
Q 038858 384 LLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNIS 463 (740)
Q Consensus 384 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 463 (740)
++++|++....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+++|+.|++++|.+.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 9999999877666678999999999999999988888899999999999999999865 3566889999999999886
Q ss_pred CCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhcc
Q 038858 464 GSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLS 543 (740)
Q Consensus 464 ~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~ 543 (740)
+ +...++|++|++++|.+..... . ..++|+.|++++|.+++. ..+.. ++
T Consensus 200 ~------------------~~~~~~L~~L~l~~n~l~~~~~-~--~~~~L~~L~l~~n~l~~~--~~l~~--------l~ 248 (390)
T 3o6n_A 200 T------------------LAIPIAVEELDASHNSINVVRG-P--VNVELTILKLQHNNLTDT--AWLLN--------YP 248 (390)
T ss_dssp E------------------EECCSSCSEEECCSSCCCEEEC-C--CCSSCCEEECCSSCCCCC--GGGGG--------CT
T ss_pred c------------------cCCCCcceEEECCCCeeeeccc-c--ccccccEEECCCCCCccc--HHHcC--------CC
Confidence 2 1234689999999999985533 2 357999999999999864 23333 68
Q ss_pred ccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEcc
Q 038858 544 LLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVA 623 (740)
Q Consensus 544 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 623 (740)
+|++|++++|.+.+..|..|..+++|++|+|++|++++ .+..+..+++|++|++++|+++ .+|..+..+++|++|+++
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~ 326 (390)
T 3o6n_A 249 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLD 326 (390)
T ss_dssp TCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECC
T ss_pred CccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECC
Confidence 99999999999998889999999999999999999996 4666788999999999999998 667778999999999999
Q ss_pred CCcccccCCCCCccccCCCccccCCCCCCCCCCCC
Q 038858 624 YNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPLP 658 (740)
Q Consensus 624 ~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~ 658 (740)
+|+++... +..+++++.+++++|||.|+|...
T Consensus 327 ~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~~~ 358 (390)
T 3o6n_A 327 HNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRA 358 (390)
T ss_dssp SSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHH
T ss_pred CCccceeC---chhhccCCEEEcCCCCccchhHHH
Confidence 99998763 467889999999999999987543
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.3e-34 Score=307.53 Aligned_cols=352 Identities=17% Similarity=0.138 Sum_probs=224.1
Q ss_pred hhhcCCCCCCEEEccCCCCcccCchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcC
Q 038858 225 KFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDIL 304 (740)
Q Consensus 225 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 304 (740)
..++.+++|+.|++++|.+++. | . ++.+++|++|++++|.+++. .+..+++|++|++++|.+++ ++ + ..+
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~-l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~-~~--~-~~l 105 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDM-T-G-IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTN-LD--V-TPL 105 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCC-T-T-GGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--C-TTC
T ss_pred cChhHcCCCCEEEccCCCcccC-h-h-hcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCce-ee--c-CCC
Confidence 3455667777777777777643 4 2 36677777777777777664 26667777777777777763 33 2 236
Q ss_pred CCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEE
Q 038858 305 PSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLL 384 (740)
Q Consensus 305 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 384 (740)
++|++|++++|.+++. + +..+++|++|++++|++++ ++ +..+++|++|++++|...+.. .+..+++|++|+
T Consensus 106 ~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ 176 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLD 176 (457)
T ss_dssp TTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEE
T ss_pred CcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEE
Confidence 7777777777777653 3 6677777777777777763 33 235677777777777433322 355677777777
Q ss_pred ccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCC
Q 038858 385 LEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISG 464 (740)
Q Consensus 385 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 464 (740)
+++|++.+. + +..+++|++|++++|.+++. .+..+++|+.|++++|++++. | +..+++|+.|++++|++++
T Consensus 177 ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 177 CSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp CCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC
T ss_pred CCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCC
Confidence 777777653 2 56677777777777777643 266677777777777777753 3 6667777777777777663
Q ss_pred CCCCCCCCCcCCccCchhhhcc-------ccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccc
Q 038858 465 SLPSYLSYNRLNGSIPDRIDGL-------LRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALH 537 (740)
Q Consensus 465 ~~~~~l~~n~l~~~~~~~~~~l-------~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 537 (740)
..+ ..+.++ .+|+.|++++|.+.+..| ++.+++|+.|++++|...+.+|........-
T Consensus 248 ~~~-------------~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L 312 (457)
T 3bz5_A 248 LDV-------------STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITEL 312 (457)
T ss_dssp CCC-------------TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCC
T ss_pred cCH-------------HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEe
Confidence 211 111111 134445555555444444 4566777777777777655554332222222
Q ss_pred hhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCC
Q 038858 538 ERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNAL 617 (740)
Q Consensus 538 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 617 (740)
.+..+++|+.|++++|++++. + +..+++|+.|++++|++++ ++.|+.|++++|.+.+. ..+..|
T Consensus 313 ~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l 376 (457)
T 3bz5_A 313 DLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITM 376 (457)
T ss_dssp CCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEEC
T ss_pred chhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeec
Confidence 233456777888888887763 2 6777788888888887775 24556667777777654 244567
Q ss_pred CEEEccCCcccccCCCCC
Q 038858 618 VVFSVAYNNLSGKIPEMT 635 (740)
Q Consensus 618 ~~L~l~~N~l~~~~~~~~ 635 (740)
..+++++|+++|.+|..+
T Consensus 377 ~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 377 PKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp CCBCCBTTBEEEECCTTC
T ss_pred CccccccCcEEEEcChhH
Confidence 788999999999888643
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.5e-33 Score=313.31 Aligned_cols=335 Identities=21% Similarity=0.258 Sum_probs=245.7
Q ss_pred CCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcE
Q 038858 279 HKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEI 358 (740)
Q Consensus 279 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 358 (740)
+++++.+++++|.+. .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.++ .++...+.++++|++
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCE
Confidence 467888888888877 677777777888999999999888877778888889999999988888 455555557888888
Q ss_pred EEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcc
Q 038858 359 LVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHL 438 (740)
Q Consensus 359 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~ 438 (740)
|++++|.+.+.++..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++. .+..+++|+.|++++|.+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence 88888888877766677888888888888888877777788888888888888887753 245567788888888877
Q ss_pred cCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeC
Q 038858 439 EGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDL 518 (740)
Q Consensus 439 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 518 (740)
.+ +...++|+.|++++|.+.. ++..+ .++|+.|++++|.+++ +..+..+++|+.|++
T Consensus 205 ~~-----l~~~~~L~~L~ls~n~l~~--------------~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~L 261 (597)
T 3oja_B 205 ST-----LAIPIAVEELDASHNSINV--------------VRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDL 261 (597)
T ss_dssp SE-----EECCTTCSEEECCSSCCCE--------------EECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEEC
T ss_pred cc-----ccCCchhheeeccCCcccc--------------ccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEEC
Confidence 63 3345678888888887762 11111 2567888888887764 356777777888888
Q ss_pred CCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEEC
Q 038858 519 SDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDL 598 (740)
Q Consensus 519 ~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 598 (740)
++|.+.+..|..|.. +++|+.|++++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|
T Consensus 262 s~N~l~~~~~~~~~~--------l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L 331 (597)
T 3oja_B 262 SYNELEKIMYHPFVK--------MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 331 (597)
T ss_dssp CSSCCCEEESGGGTT--------CSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred CCCccCCCCHHHhcC--------ccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEEC
Confidence 888777776666655 5677777777777775 3555666778888888888777 45666777788888888
Q ss_pred CCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCCCCCC
Q 038858 599 YHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLP 656 (740)
Q Consensus 599 s~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~ 656 (740)
++|++++. | +..+++|+.|++++|++++..+. ..+..+....+.+++..|+.+
T Consensus 332 ~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 332 DHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp CSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCCCCCCCTT
T ss_pred CCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH--HHHHHHhhhccccccccCCcc
Confidence 88887744 2 45667788888888887764322 224445555667777777653
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.5e-32 Score=285.78 Aligned_cols=304 Identities=25% Similarity=0.361 Sum_probs=171.2
Q ss_pred CCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcE
Q 038858 279 HKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEI 358 (740)
Q Consensus 279 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 358 (740)
+++|++|+++++.+. .++. + ..+++|++|++++|.+++..+ +..+++|++|++++|.++ .++. +..+++|++
T Consensus 43 l~~L~~L~l~~~~i~-~~~~-~-~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~ 114 (347)
T 4fmz_A 43 LESITKLVVAGEKVA-SIQG-I-EYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA--LQNLTNLRE 114 (347)
T ss_dssp HTTCSEEECCSSCCC-CCTT-G-GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSE
T ss_pred cccccEEEEeCCccc-cchh-h-hhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-CchH--HcCCCcCCE
Confidence 344444444444443 2322 1 224555555555555543222 455555555555555554 2321 234555555
Q ss_pred EEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcc
Q 038858 359 LVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHL 438 (740)
Q Consensus 359 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~ 438 (740)
|++++|.+.+... +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+
T Consensus 115 L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l 189 (347)
T 4fmz_A 115 LYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI 189 (347)
T ss_dssp EECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCC
T ss_pred EECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcc
Confidence 5555555544322 4455566666666664443333 25566666666666666653322 55566666666666666
Q ss_pred cCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeC
Q 038858 439 EGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDL 518 (740)
Q Consensus 439 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 518 (740)
.+..+ +..+++|+.+++++|.+. ..+. +..+++|++|++++|.+++..+ +..+++|++|++
T Consensus 190 ~~~~~--~~~l~~L~~L~l~~n~l~--------------~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 250 (347)
T 4fmz_A 190 EDISP--LASLTSLHYFTAYVNQIT--------------DITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEI 250 (347)
T ss_dssp CCCGG--GGGCTTCCEEECCSSCCC--------------CCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred ccccc--ccCCCccceeecccCCCC--------------CCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEEC
Confidence 54322 556666777777666665 1222 5566667777777776664433 666677777777
Q ss_pred CCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEEC
Q 038858 519 SDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDL 598 (740)
Q Consensus 519 ~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 598 (740)
++|.+++. ..+.. +++|+.|++++|.+++. ..+..+++|+.|++++|.+++..+..|..+++|++|++
T Consensus 251 ~~n~l~~~--~~~~~--------l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 318 (347)
T 4fmz_A 251 GTNQISDI--NAVKD--------LTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318 (347)
T ss_dssp CSSCCCCC--GGGTT--------CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEEC
T ss_pred CCCccCCC--hhHhc--------CCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEc
Confidence 77766543 12222 45666666666666643 34666677777777777777666677777777777777
Q ss_pred CCCcCCccCchhhhcCCCCCEEEccCCccc
Q 038858 599 YHNKLNGKIPCQLVELNALVVFSVAYNNLS 628 (740)
Q Consensus 599 s~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 628 (740)
++|++++..| +..+++|++|++++|+++
T Consensus 319 ~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 319 SQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cCCccccccC--hhhhhccceeehhhhccc
Confidence 7777765544 566777777777777664
No 38
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.2e-33 Score=289.97 Aligned_cols=259 Identities=33% Similarity=0.545 Sum_probs=225.9
Q ss_pred CCCCeEEccCCcccc--cCccccccCCCCCeEEccC-CcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccE
Q 038858 378 TKLSWLLLEDNHFVE--EIPQSLSKCLSLEGLHLNN-NNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQI 454 (740)
Q Consensus 378 ~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 454 (740)
.+++.|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+++..|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467778888888777 6777888888888888884 7777778888888888888888888888778888888888888
Q ss_pred EeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCC-cccEEeCCCccccCCCCCcccc
Q 038858 455 LGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLN-QLQLLDLSDNKLHGLIPPCFDN 533 (740)
Q Consensus 455 L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~ 533 (740)
|++++|.+.+ .+|..+..+++|++|++++|.+++..|..+..++ +|+.|++++|.+.+..|..+..
T Consensus 130 L~Ls~N~l~~-------------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~ 196 (313)
T 1ogq_A 130 LDFSYNALSG-------------TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196 (313)
T ss_dssp EECCSSEEES-------------CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG
T ss_pred EeCCCCccCC-------------cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC
Confidence 8888887763 5566788888999999999999888888888887 8999999999998888877766
Q ss_pred cccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhc
Q 038858 534 TALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVE 613 (740)
Q Consensus 534 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 613 (740)
+. |+.|++++|.+.+..|..|..+++|+.|+|++|.+++..+. +..+++|++|++++|++++.+|..+..
T Consensus 197 --------l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 266 (313)
T 1ogq_A 197 --------LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQ 266 (313)
T ss_dssp --------CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGG
T ss_pred --------Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhc
Confidence 34 99999999999988899999999999999999999976665 888999999999999999999999999
Q ss_pred CCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCCCCCCCCCC
Q 038858 614 LNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPLPIC 660 (740)
Q Consensus 614 l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~~c 660 (740)
+++|++|++++|++++.+|.. ..+++|+.+++.+||+.|+.|...|
T Consensus 267 l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~~~C 312 (313)
T 1ogq_A 267 LKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPAC 312 (313)
T ss_dssp CTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred CcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCCCCCC
Confidence 999999999999999999996 8899999999999999999876666
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.9e-33 Score=312.91 Aligned_cols=313 Identities=19% Similarity=0.172 Sum_probs=274.1
Q ss_pred CCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeE
Q 038858 304 LPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWL 383 (740)
Q Consensus 304 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 383 (740)
+++++.+++++|.+....+..|.++++|++|++++|.+. .++...+..+++|++|++++|.+.+..+..++.+++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 578999999999999777777899999999999999998 5555555689999999999999999888889999999999
Q ss_pred EccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCC
Q 038858 384 LLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNIS 463 (740)
Q Consensus 384 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 463 (740)
++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+++.. +..+++|+.|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 99999999777777899999999999999999888889999999999999999998653 556789999999999886
Q ss_pred CCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhcc
Q 038858 464 GSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLS 543 (740)
Q Consensus 464 ~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~ 543 (740)
+ +...++|+.|++++|.+....+.. .++|+.|++++|.+++. ..+.. ++
T Consensus 206 ~------------------l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~--------l~ 254 (597)
T 3oja_B 206 T------------------LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLN--------YP 254 (597)
T ss_dssp E------------------EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGG--------CT
T ss_pred c------------------ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhcc--------CC
Confidence 2 223468999999999998554332 36899999999999863 33433 78
Q ss_pred ccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEcc
Q 038858 544 LLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVA 623 (740)
Q Consensus 544 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 623 (740)
+|+.|++++|.+.+..|..|..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|+++ .+|..+..+++|++|+++
T Consensus 255 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~ 332 (597)
T 3oja_B 255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLD 332 (597)
T ss_dssp TCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECC
T ss_pred CCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECC
Confidence 99999999999999999999999999999999999996 5667788999999999999999 678888999999999999
Q ss_pred CCcccccCCCCCccccCCCccccCCCCCCCCCC
Q 038858 624 YNNLSGKIPEMTTQFATFNESNYKGNPFLCGLP 656 (740)
Q Consensus 624 ~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~ 656 (740)
+|++++.. +..+++|+.+++++|||.|+|.
T Consensus 333 ~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 333 HNSIVTLK---LSTHHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp SSCCCCCC---CCTTCCCSEEECCSSCEEHHHH
T ss_pred CCCCCCcC---hhhcCCCCEEEeeCCCCCChhH
Confidence 99998764 4567899999999999999874
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.9e-32 Score=283.60 Aligned_cols=303 Identities=23% Similarity=0.384 Sum_probs=262.8
Q ss_pred CCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeE
Q 038858 304 LPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWL 383 (740)
Q Consensus 304 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 383 (740)
+++|++|++++|.+.. ++ .+..+++|++|++++|.++ .++. +..+++|++|++++|.+.+. ..+..+++|++|
T Consensus 43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 7899999999999984 34 4889999999999999998 5555 55899999999999999875 458889999999
Q ss_pred EccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCC
Q 038858 384 LLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNIS 463 (740)
Q Consensus 384 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 463 (740)
++++|.+.+..+ +..+++|++|++++|...... ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.
T Consensus 116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred ECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence 999999986543 889999999999999665343 448899999999999999986544 888999999999999986
Q ss_pred CCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhcc
Q 038858 464 GSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLS 543 (740)
Q Consensus 464 ~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~ 543 (740)
.++. +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++..+ +.. ++
T Consensus 191 --------------~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~--------l~ 243 (347)
T 4fmz_A 191 --------------DISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LAN--------LS 243 (347)
T ss_dssp --------------CCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTT--------CT
T ss_pred --------------cccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhc--------CC
Confidence 3333 7889999999999999986555 8889999999999999986544 433 68
Q ss_pred ccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEcc
Q 038858 544 LLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVA 623 (740)
Q Consensus 544 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 623 (740)
+|+.|++++|.+++. +.+..+++|++|++++|.+++. ..+..+++|++|++++|++++..|..+..+++|++|+++
T Consensus 244 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 244 QLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319 (347)
T ss_dssp TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECC
T ss_pred CCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEcc
Confidence 999999999999864 5789999999999999999974 568999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCccccCCCccccCCCCC
Q 038858 624 YNNLSGKIPEMTTQFATFNESNYKGNPF 651 (740)
Q Consensus 624 ~N~l~~~~~~~~~~~~~l~~~~~~~Np~ 651 (740)
+|++++..| +..+++|+.+++++|+.
T Consensus 320 ~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 320 QNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp SSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred CCccccccC--hhhhhccceeehhhhcc
Confidence 999998877 58899999999999986
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.2e-32 Score=293.59 Aligned_cols=345 Identities=17% Similarity=0.155 Sum_probs=253.8
Q ss_pred hcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCc
Q 038858 253 ENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQ 332 (740)
Q Consensus 253 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 332 (740)
+.+++|++|++++|.+++. + .+..+++|++|++++|.+++ +| + ..+++|++|++++|.+++. + +.++++|+
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~-~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~ 109 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--L-SQNTNLTYLACDSNKLTNL-D--VTPLTKLT 109 (457)
T ss_dssp HHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--C-TTCTTCSEEECCSSCCSCC-C--CTTCTTCC
T ss_pred hHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--c-ccCCCCCEEECcCCCCcee-e--cCCCCcCC
Confidence 6889999999999999875 3 68889999999999999984 55 3 3489999999999999864 3 88999999
Q ss_pred EEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCC
Q 038858 333 ILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNN 412 (740)
Q Consensus 333 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 412 (740)
+|++++|+++ .++ +..+++|++|++++|++++. .+..+++|++|++++|+..+.. .+..+++|++|++++|
T Consensus 110 ~L~L~~N~l~-~l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 110 YLNCDTNKLT-KLD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp EEECCSSCCS-CCC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred EEECCCCcCC-eec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence 9999999998 455 44789999999999999885 3678999999999999655554 4778999999999999
Q ss_pred cCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEE
Q 038858 413 NLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHL 492 (740)
Q Consensus 413 ~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L 492 (740)
.+++ ++ +..+++|+.|++++|.+++. .+..+++|+.|++++|+++ .+| +..+++|+.|
T Consensus 181 ~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~--------------~ip--~~~l~~L~~L 238 (457)
T 3bz5_A 181 KITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT--------------EID--VTPLTQLTYF 238 (457)
T ss_dssp CCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCS--------------CCC--CTTCTTCSEE
T ss_pred ccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccc--------------ccC--ccccCCCCEE
Confidence 9986 44 77899999999999999865 4888999999999999987 344 6778999999
Q ss_pred EcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCc--------Ccc
Q 038858 493 ILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPP--------QIG 564 (740)
Q Consensus 493 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------~~~ 564 (740)
++++|.+++..+. .+++|+.|++++|.+.......-.....-....+++|+.|++++|...+.+|. .+.
T Consensus 239 ~l~~N~l~~~~~~---~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~ 315 (457)
T 3bz5_A 239 DCSVNPLTELDVS---TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLS 315 (457)
T ss_dssp ECCSSCCSCCCCT---TCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCT
T ss_pred EeeCCcCCCcCHH---HCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechh
Confidence 9999999976544 45556555555544332111000000000011256777778877765544332 245
Q ss_pred CCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCcc
Q 038858 565 NLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNES 644 (740)
Q Consensus 565 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~ 644 (740)
.+++|++|++++|++++. .+..+++|+.|++++|++++ ++.|..|++++|.++|. ..+..+..+
T Consensus 316 ~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l 379 (457)
T 3bz5_A 316 QNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKE 379 (457)
T ss_dssp TCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCB
T ss_pred hcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCcc
Confidence 556677777777777763 26667777777777777763 23455556677777664 234556677
Q ss_pred ccCCCCCCCCCC
Q 038858 645 NYKGNPFLCGLP 656 (740)
Q Consensus 645 ~~~~Np~~C~~~ 656 (740)
+++.|.+...-|
T Consensus 380 ~l~~N~l~g~ip 391 (457)
T 3bz5_A 380 TLTNNSLTIAVS 391 (457)
T ss_dssp CCBTTBEEEECC
T ss_pred ccccCcEEEEcC
Confidence 777776654433
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1e-30 Score=271.26 Aligned_cols=129 Identities=21% Similarity=0.295 Sum_probs=59.8
Q ss_pred cCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCC
Q 038858 488 RLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLT 567 (740)
Q Consensus 488 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 567 (740)
+|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+.. +++|+.|++++|+++ .+|..+..++
T Consensus 194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~--------l~~L~~L~L~~N~l~-~lp~~l~~l~ 264 (332)
T 2ft3_A 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF--------LPTLRELHLDNNKLS-RVPAGLPDLK 264 (332)
T ss_dssp SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG--------CTTCCEEECCSSCCC-BCCTTGGGCT
T ss_pred CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC--------CCCCCEEECCCCcCe-ecChhhhcCc
Confidence 4444444444444444444444455555555555544444333333 334444555544444 3444445555
Q ss_pred cCcEEeCcCCcCCCccchhccCc------CCCcEEECCCCcCC--ccCchhhhcCCCCCEEEccCC
Q 038858 568 RIQTLNLSHNNLTGTILSTFTNL------RHIESLDLYHNKLN--GKIPCQLVELNALVVFSVAYN 625 (740)
Q Consensus 568 ~L~~L~L~~n~l~~~~~~~~~~l------~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~l~~N 625 (740)
+|++|++++|++++..+..|... ++|+.|++++|++. +..|..|..+++|+.+++++|
T Consensus 265 ~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp TCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred cCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 55555555555554444444332 34555555555554 344444555555555555544
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=6e-34 Score=310.66 Aligned_cols=361 Identities=19% Similarity=0.157 Sum_probs=215.3
Q ss_pred CCCCEEEccCCCCcccCchHhhhcCCCCCEEeccCCcccCC----CCCCCCCCCCcCEEeccCCcCcccCChhHhhcCC-
Q 038858 231 NKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGP----FRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILP- 305 (740)
Q Consensus 231 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~- 305 (740)
++|+.|+++++.+++.....++..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+..+..++..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 45777888888877655555457788888888888877642 2334566788999999998887655656666565
Q ss_pred ---CCcEEEccCCcCcc----cCCccccCCCCCcEEEeecccCCCccChhhhh----cCccCcEEEcCCccccccC----
Q 038858 306 ---SLSSFNISMNALDG----SIPSSFGNMNFLQILDLSNNHLTGEIPEHLAI----GCVNLEILVLSNNNLEGHM---- 370 (740)
Q Consensus 306 ---~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----~l~~L~~L~L~~n~l~~~~---- 370 (740)
+|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+.. ..++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 69999999998884 45778888999999999999887444433322 2456888888888777543
Q ss_pred CcCCCCCCCCCeEEccCCcccccCccccc-----cCCCCCeEEccCCcCccc----CCCCCCCccCcceeeccCCcccCC
Q 038858 371 FSKNFNLTKLSWLLLEDNHFVEEIPQSLS-----KCLSLEGLHLNNNNLSGK----IPQWLGNLTGLQYIIIPENHLEGP 441 (740)
Q Consensus 371 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~l~~n~~~~~ 441 (740)
+..+..+++|++|++++|.+....+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 23344567788888888777654333332 245777777777777642 344455567777777777766543
Q ss_pred C-----CccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEccccccccccccccc-----CCC
Q 038858 442 I-----PVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLC-----GLN 511 (740)
Q Consensus 442 ~-----~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~ 511 (740)
. +..+..+++|++|++++|.+++... ..++..+..+++|++|++++|.+++..+..+. ..+
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~---------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 313 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGC---------GDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGC 313 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHH---------HHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTC
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHH---------HHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCc
Confidence 2 1122346677777777776651100 01445556666777777777766543333322 124
Q ss_pred cccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccC-----CCcCcEEeCcCCcCCC----c
Q 038858 512 QLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGN-----LTRIQTLNLSHNNLTG----T 582 (740)
Q Consensus 512 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~----~ 582 (740)
+|++|++++|.+++.....+.. .+..+++|++|++++|.+.+..+..+.. .++|++|+|++|.+++ .
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~----~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 389 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSS----VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS 389 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHH----HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred cceeeEcCCCCCchHHHHHHHH----HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHH
Confidence 6666666666655332111111 1122345555555555554332222211 3455555555555553 3
Q ss_pred cchhccCcCCCcEEECCCCcCC
Q 038858 583 ILSTFTNLRHIESLDLYHNKLN 604 (740)
Q Consensus 583 ~~~~~~~l~~L~~L~Ls~N~l~ 604 (740)
++..+..+++|++|++++|+++
T Consensus 390 l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 390 LAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHHHCCCCCEEECCSSSCC
T ss_pred HHHHHHhCCCccEEECCCCCCC
Confidence 4444455555555555555554
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5.6e-30 Score=265.61 Aligned_cols=290 Identities=23% Similarity=0.300 Sum_probs=148.9
Q ss_pred CcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEE
Q 038858 281 SLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILV 360 (740)
Q Consensus 281 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 360 (740)
+++.++++++.+. .+|..+ .+.+++|++++|.+++..+..|.++++|++|++++|.+++..|..+ .++++|++|+
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEE
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh-cCCCCCCEEE
Confidence 5666777766665 555433 2466666776666665555566666666666666666663323332 3556666666
Q ss_pred cCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccC
Q 038858 361 LSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEG 440 (740)
Q Consensus 361 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~ 440 (740)
+++|.++...... .++|++|++++|++.+..+..+..+++|++|++++|.+.. .+
T Consensus 107 Ls~n~l~~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~ 161 (330)
T 1xku_A 107 LSKNQLKELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS----------------------SG 161 (330)
T ss_dssp CCSSCCSBCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG----------------------GG
T ss_pred CCCCcCCccChhh---cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc----------------------cC
Confidence 6666555332221 1455555555555554444444455555555555554431 01
Q ss_pred CCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCC
Q 038858 441 PIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSD 520 (740)
Q Consensus 441 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 520 (740)
..+..+..+++|+.|++++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++
T Consensus 162 ~~~~~~~~l~~L~~L~l~~n~l~--------------~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 225 (330)
T 1xku_A 162 IENGAFQGMKKLSYIRIADTNIT--------------TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225 (330)
T ss_dssp BCTTGGGGCTTCCEEECCSSCCC--------------SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCS
T ss_pred cChhhccCCCCcCEEECCCCccc--------------cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence 22233334444444444444443 1111111 3455555555555544455555555555555555
Q ss_pred ccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccC------cCCCc
Q 038858 521 NKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTN------LRHIE 594 (740)
Q Consensus 521 n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~ 594 (740)
|.+.+..+..+.. +++|+.|++++|.++ .+|..+..+++|++|++++|++++..+..|.. .+.|+
T Consensus 226 n~l~~~~~~~~~~--------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~ 296 (330)
T 1xku_A 226 NSISAVDNGSLAN--------TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 296 (330)
T ss_dssp SCCCEECTTTGGG--------STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCS
T ss_pred CcCceeChhhccC--------CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccccccccccc
Confidence 5555444444433 345555555555555 44555555666666666666666555554432 25556
Q ss_pred EEECCCCcCCc--cCchhhhcCCCCCEEEccCC
Q 038858 595 SLDLYHNKLNG--KIPCQLVELNALVVFSVAYN 625 (740)
Q Consensus 595 ~L~Ls~N~l~~--~~~~~~~~l~~L~~L~l~~N 625 (740)
.|++++|++.. ..|..|..+++++.+++++|
T Consensus 297 ~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 297 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp EEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ceEeecCcccccccCccccccccceeEEEeccc
Confidence 66666666542 34455555666666666655
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=4e-30 Score=266.83 Aligned_cols=290 Identities=20% Similarity=0.256 Sum_probs=208.2
Q ss_pred CCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEc
Q 038858 330 FLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHL 409 (740)
Q Consensus 330 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 409 (740)
.++.++++++.++ .+|..+ .++|+.|++++|.+.+..+..+..+++|++|++++|++.+..+..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4667777777776 666554 256777788877777776667777888888888888888777777888888888888
Q ss_pred cCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccC
Q 038858 410 NNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRL 489 (740)
Q Consensus 410 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L 489 (740)
++|.++ .+|..+. ++|++|++++|.+.+..+..|..+++|+.|++++|.+... +..+..+..+ +|
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~~~~~l-~L 174 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS-----------GFEPGAFDGL-KL 174 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG-----------GSCTTSSCSC-CC
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC-----------CCCcccccCC-cc
Confidence 888887 4444443 7888888888888877667788888888888888877521 1334445555 77
Q ss_pred cEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcC
Q 038858 490 SHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRI 569 (740)
Q Consensus 490 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 569 (740)
+.|++++|.+++ +|..+. ++|++|++++|.+.+..+..+.. +++|+.|++++|.+.+..+..+..+++|
T Consensus 175 ~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~--------l~~L~~L~L~~N~l~~~~~~~~~~l~~L 243 (332)
T 2ft3_A 175 NYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLR--------YSKLYRLGLGHNQIRMIENGSLSFLPTL 243 (332)
T ss_dssp SCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTT--------CTTCSCCBCCSSCCCCCCTTGGGGCTTC
T ss_pred CEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcC--------CCCCCEEECCCCcCCcCChhHhhCCCCC
Confidence 888888887774 333332 57888888888887776666655 5678888888888877766677778888
Q ss_pred cEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhc------CCCCCEEEccCCccc--ccCCCCCccccCC
Q 038858 570 QTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVE------LNALVVFSVAYNNLS--GKIPEMTTQFATF 641 (740)
Q Consensus 570 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~l~~N~l~--~~~~~~~~~~~~l 641 (740)
++|+|++|+++ .+|..+..+++|++|++++|++++..+..|.. .+.|+.+++++|++. +..|..+..++.+
T Consensus 244 ~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L 322 (332)
T 2ft3_A 244 RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR 322 (332)
T ss_dssp CEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCS
T ss_pred CEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchh
Confidence 88888888877 56666777888888888888887666655544 356778888888776 5566666677777
Q ss_pred CccccCCCC
Q 038858 642 NESNYKGNP 650 (740)
Q Consensus 642 ~~~~~~~Np 650 (740)
+.+++++|.
T Consensus 323 ~~l~l~~n~ 331 (332)
T 2ft3_A 323 LAIQFGNYK 331 (332)
T ss_dssp TTEEC----
T ss_pred hhhhccccc
Confidence 777777763
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=8.8e-30 Score=264.17 Aligned_cols=290 Identities=21% Similarity=0.266 Sum_probs=200.9
Q ss_pred CCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEc
Q 038858 330 FLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHL 409 (740)
Q Consensus 330 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 409 (740)
+++.++++++.++ .+|..+ .++++.|++++|.+++.....+..+++|++|++++|.+.+..|..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 4566666666665 555543 256777777777777666666777778888888888877777777888888888888
Q ss_pred cCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccC
Q 038858 410 NNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRL 489 (740)
Q Consensus 410 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L 489 (740)
++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+... +..+..+.++++|
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~~~~~l~~L 173 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS-----------GIENGAFQGMKKL 173 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG-----------GBCTTGGGGCTTC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc-----------CcChhhccCCCCc
Confidence 888877 4444433 6788888888888877777788888888888888877521 2345567777888
Q ss_pred cEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcC
Q 038858 490 SHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRI 569 (740)
Q Consensus 490 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 569 (740)
++|++++|.++. +|..+. ++|++|++++|.+.+..+..+.. +++|+.|++++|.+++..+..+..+++|
T Consensus 174 ~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 242 (330)
T 1xku_A 174 SYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKG--------LNNLAKLGLSFNSISAVDNGSLANTPHL 242 (330)
T ss_dssp CEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTT--------CTTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred CEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcC--------CCCCCEEECCCCcCceeChhhccCCCCC
Confidence 888888887774 333332 67777888877777666666655 5677777777777776666677777777
Q ss_pred cEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhc------CCCCCEEEccCCcccc--cCCCCCccccCC
Q 038858 570 QTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVE------LNALVVFSVAYNNLSG--KIPEMTTQFATF 641 (740)
Q Consensus 570 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~l~~N~l~~--~~~~~~~~~~~l 641 (740)
++|+|++|+++ .+|..+..+++|++|++++|++++..+..|.. .+.++.+++++|++.. ..|..+..+..+
T Consensus 243 ~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l 321 (330)
T 1xku_A 243 RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321 (330)
T ss_dssp CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCG
T ss_pred CEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccce
Confidence 77777777777 55666777777777777777777665555543 2567777777777753 444555556666
Q ss_pred CccccCCC
Q 038858 642 NESNYKGN 649 (740)
Q Consensus 642 ~~~~~~~N 649 (740)
+.+++++|
T Consensus 322 ~~l~L~~N 329 (330)
T 1xku_A 322 AAVQLGNY 329 (330)
T ss_dssp GGEEC---
T ss_pred eEEEeccc
Confidence 66666665
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=9.6e-31 Score=268.38 Aligned_cols=233 Identities=30% Similarity=0.464 Sum_probs=144.8
Q ss_pred CCCCCCCCCeEEccC-CcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCC
Q 038858 373 KNFNLTKLSWLLLED-NHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDS 451 (740)
Q Consensus 373 ~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 451 (740)
.+..+++|++|++++ |.+.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++
T Consensus 71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 150 (313)
T 1ogq_A 71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150 (313)
T ss_dssp GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCC
Confidence 333444444444442 4444444444555555555555555554444444555555555555555555555555555555
Q ss_pred ccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccc-cCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCc
Q 038858 452 LQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLL-RLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPC 530 (740)
Q Consensus 452 L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 530 (740)
|++|++++|++++ .+|..+..++ +|++|++++|.+++..|..+..++ |+.|++++|.+.+..|..
T Consensus 151 L~~L~L~~N~l~~-------------~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~ 216 (313)
T 1ogq_A 151 LVGITFDGNRISG-------------AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVL 216 (313)
T ss_dssp CCEEECCSSCCEE-------------ECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGG
T ss_pred CCeEECcCCcccC-------------cCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHH
Confidence 5555555555442 3344444454 556666666666555555555554 666666666666555555
Q ss_pred ccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchh
Q 038858 531 FDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQ 610 (740)
Q Consensus 531 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 610 (740)
+.. +++|+.|++++|.+++..|. +..+++|++|+|++|++++..|..|..+++|++|++++|++++.+|..
T Consensus 217 ~~~--------l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 217 FGS--------DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp CCT--------TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred Hhc--------CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 544 45666666666666655443 667788888888888888888888888888999999999888888875
Q ss_pred hhcCCCCCEEEccCCc-ccc
Q 038858 611 LVELNALVVFSVAYNN-LSG 629 (740)
Q Consensus 611 ~~~l~~L~~L~l~~N~-l~~ 629 (740)
..+++|+.+++++|+ +.|
T Consensus 288 -~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 288 -GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp -TTGGGSCGGGTCSSSEEES
T ss_pred -ccccccChHHhcCCCCccC
Confidence 778888888999888 444
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=6.8e-33 Score=302.31 Aligned_cols=362 Identities=16% Similarity=0.140 Sum_probs=222.6
Q ss_pred CCCCEEeccCCcccCCCCCC-CCCCCCcCEEeccCCcCccc----CChhHhhcCCCCcEEEccCCcCcccCCccc-cCCC
Q 038858 256 TKLESLSLVNDSLAGPFRLP-IHSHKSLRLLDVSNNNFQGR----IPAEIGDILPSLSSFNISMNALDGSIPSSF-GNMN 329 (740)
Q Consensus 256 ~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~l~ 329 (740)
++|++|+++++.+++..... +..+++|++|++++|.+.+. ++..+. .+++|++|++++|.+++..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALR-VNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHH-TCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHH-hCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 45677788777765433222 45567788888888777632 222222 36778888888877765333222 2233
Q ss_pred ----CCcEEEeecccCCCc----cChhhhhcCccCcEEEcCCccccccCCcCC-----CCCCCCCeEEccCCcccccC--
Q 038858 330 ----FLQILDLSNNHLTGE----IPEHLAIGCVNLEILVLSNNNLEGHMFSKN-----FNLTKLSWLLLEDNHFVEEI-- 394 (740)
Q Consensus 330 ----~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~-- 394 (740)
+|++|++++|.+++. ++.. +..+++|++|++++|.+.+.....+ ...++|++|++++|++....
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSST-LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHH-TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHH-HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 578888888877632 2322 3367778888888877664332221 22456888888888776543
Q ss_pred --ccccccCCCCCeEEccCCcCcccCCCCCC-----CccCcceeeccCCcccCC----CCccccCCCCccEEeccCCcCC
Q 038858 395 --PQSLSKCLSLEGLHLNNNNLSGKIPQWLG-----NLTGLQYIIIPENHLEGP----IPVAFCQLDSLQILGISDNNIS 463 (740)
Q Consensus 395 --~~~~~~l~~L~~L~l~~n~i~~~~~~~l~-----~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~ 463 (740)
+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|++.
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 44556677788888888776543222222 244777888888777653 3455666777888888777765
Q ss_pred CCCCCCCCCCcCCccCchhhhccccCcEEEccccccccc----ccccccCCCcccEEeCCCccccCCCCCcccccccchh
Q 038858 464 GSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGE----VPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHER 539 (740)
Q Consensus 464 ~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 539 (740)
+... ....+..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+... ..
T Consensus 241 ~~~~--------~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~---l~ 309 (461)
T 1z7x_W 241 DVGM--------AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET---LL 309 (461)
T ss_dssp HHHH--------HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH---HT
T ss_pred hHHH--------HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHH---hc
Confidence 2100 000012223467788888888877653 45556667778888888877654332222210 00
Q ss_pred hhccccceEEccCcccccc----CCcCccCCCcCcEEeCcCCcCCCccchhccC-----cCCCcEEECCCCcCCc----c
Q 038858 540 RVLSLLSGIDLSCNKLIGD----IPPQIGNLTRIQTLNLSHNNLTGTILSTFTN-----LRHIESLDLYHNKLNG----K 606 (740)
Q Consensus 540 ~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~----~ 606 (740)
...++|+.|++++|.+++. ++..+..+++|++|+|++|.+++..+..+.. .++|++|++++|++++ .
T Consensus 310 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 389 (461)
T 1z7x_W 310 EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS 389 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred cCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHH
Confidence 0124777888888877654 3445566677888888888777654444432 5678888888887775 5
Q ss_pred CchhhhcCCCCCEEEccCCccccc
Q 038858 607 IPCQLVELNALVVFSVAYNNLSGK 630 (740)
Q Consensus 607 ~~~~~~~l~~L~~L~l~~N~l~~~ 630 (740)
+|..+..+++|++|++++|++++.
T Consensus 390 l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 390 LAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHHHHHhCCCccEEECCCCCCCHH
Confidence 677777777888888888877653
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=9.4e-29 Score=266.92 Aligned_cols=233 Identities=24% Similarity=0.300 Sum_probs=175.1
Q ss_pred CCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCch
Q 038858 402 LSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPD 481 (740)
Q Consensus 402 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~ 481 (740)
++++.|++++|.+.+..+..|.++++|++|++++|.+++..+..|.++++|++|++++|++++ ..+.
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-------------~~~~ 130 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT-------------IPNG 130 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSS-------------CCTT
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCe-------------eCHh
Confidence 456666666666665555666666666666666666666555666666777777777666651 2223
Q ss_pred hhhccccCcEEEcccccccccccccccCCCcccEEeCCCcc-ccCCCCCcccccccchhhhccccceEEccCccccccCC
Q 038858 482 RIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNK-LHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIP 560 (740)
Q Consensus 482 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 560 (740)
.|..+++|++|++++|.++...+..+..+++|++|++++|. +....+..|.. +++|+.|++++|.++ .+|
T Consensus 131 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~--------l~~L~~L~L~~n~l~-~~~ 201 (440)
T 3zyj_A 131 AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG--------LSNLRYLNLAMCNLR-EIP 201 (440)
T ss_dssp TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT--------CSSCCEEECTTSCCS-SCC
T ss_pred HhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhc--------ccccCeecCCCCcCc-ccc
Confidence 45666777777777777766666667777777777777743 43333434444 567888888888777 344
Q ss_pred cCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccC
Q 038858 561 PQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFAT 640 (740)
Q Consensus 561 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 640 (740)
.+..+++|++|+|++|++++..+..|.++++|+.|++++|++++..+..|..+++|+.|++++|++++..+..+..+++
T Consensus 202 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 202 -NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280 (440)
T ss_dssp -CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred -ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence 4778889999999999999888899999999999999999999888888999999999999999999888888888999
Q ss_pred CCccccCCCCCCCCCCC
Q 038858 641 FNESNYKGNPFLCGLPL 657 (740)
Q Consensus 641 l~~~~~~~Np~~C~~~~ 657 (740)
|+.+++++|||.|+|..
T Consensus 281 L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 281 LERIHLHHNPWNCNCDI 297 (440)
T ss_dssp CCEEECCSSCEECSSTT
T ss_pred CCEEEcCCCCccCCCCc
Confidence 99999999999999964
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.2e-28 Score=267.02 Aligned_cols=232 Identities=22% Similarity=0.251 Sum_probs=163.5
Q ss_pred CCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchh
Q 038858 403 SLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDR 482 (740)
Q Consensus 403 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~ 482 (740)
++++|++++|.+++..+..|.++++|+.|++++|.+++..+..|.++++|++|++++|++++ ..+..
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-------------~~~~~ 142 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV-------------IPSGA 142 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB-------------CCTTT
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc-------------cChhh
Confidence 45555555555554445555555555555555555555555555555555555555555541 22233
Q ss_pred hhccccCcEEEcccccccccccccccCCCcccEEeCCCc-cccCCCCCcccccccchhhhccccceEEccCccccccCCc
Q 038858 483 IDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDN-KLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPP 561 (740)
Q Consensus 483 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 561 (740)
|..+++|++|++++|.++...+..+..+++|+.|++++| .+....+..|.. +++|+.|++++|.+++. |
T Consensus 143 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~--------l~~L~~L~L~~n~l~~~-~- 212 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG--------LFNLKYLNLGMCNIKDM-P- 212 (452)
T ss_dssp SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT--------CTTCCEEECTTSCCSSC-C-
T ss_pred hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccC--------CCCCCEEECCCCccccc-c-
Confidence 455566666666666666555556666666666666663 333333333443 55777777777777643 3
Q ss_pred CccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCC
Q 038858 562 QIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATF 641 (740)
Q Consensus 562 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l 641 (740)
.+..+++|++|+|++|.+++..+..|.++++|+.|++++|++++..|..|..+++|+.|++++|++++..+..+..+++|
T Consensus 213 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence 47788899999999999998888999999999999999999998888889999999999999999998888888889999
Q ss_pred CccccCCCCCCCCCCC
Q 038858 642 NESNYKGNPFLCGLPL 657 (740)
Q Consensus 642 ~~~~~~~Np~~C~~~~ 657 (740)
+.+++++|||.|+|+.
T Consensus 293 ~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 293 VELHLHHNPWNCDCDI 308 (452)
T ss_dssp CEEECCSSCEECSTTT
T ss_pred CEEEccCCCcCCCCCc
Confidence 9999999999999974
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=3.8e-29 Score=256.46 Aligned_cols=251 Identities=22% Similarity=0.255 Sum_probs=186.9
Q ss_pred eEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCC--CCccccCCCCccEEeccC
Q 038858 382 WLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGP--IPVAFCQLDSLQILGISD 459 (740)
Q Consensus 382 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~ 459 (740)
.++.+++.+... |..+ .++|++|++++|.++...+..+..+++|++|++++|.++.. .+..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~~i-p~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLTSV-PTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCSSC-CSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcccC-CCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 444555444332 2222 24666777777766644444566677777777777766532 244555677777777777
Q ss_pred CcCCCCCCCCCCCCcCCccCchhhhccccCcEEEccccccccccc-ccccCCCcccEEeCCCccccCCCCCcccccccch
Q 038858 460 NNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVP-VQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHE 538 (740)
Q Consensus 460 n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 538 (740)
|.+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..
T Consensus 88 n~i~--------------~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----- 148 (306)
T 2z66_A 88 NGVI--------------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG----- 148 (306)
T ss_dssp CSEE--------------EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT-----
T ss_pred Cccc--------------cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc-----
Confidence 7765 445556677788888888887775554 56777888888888888887777666655
Q ss_pred hhhccccceEEccCccccc-cCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCC
Q 038858 539 RRVLSLLSGIDLSCNKLIG-DIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNAL 617 (740)
Q Consensus 539 ~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 617 (740)
+++|++|++++|.+.+ ..|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|
T Consensus 149 ---l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 225 (306)
T 2z66_A 149 ---LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 225 (306)
T ss_dssp ---CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTC
T ss_pred ---CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccC
Confidence 5688888888888876 567788888999999999999988888889999999999999999987777788888999
Q ss_pred CEEEccCCcccccCCCCCcccc-CCCccccCCCCCCCCCCC
Q 038858 618 VVFSVAYNNLSGKIPEMTTQFA-TFNESNYKGNPFLCGLPL 657 (740)
Q Consensus 618 ~~L~l~~N~l~~~~~~~~~~~~-~l~~~~~~~Np~~C~~~~ 657 (740)
++|++++|++++..|..+..++ +++.+++++||+.|+|+.
T Consensus 226 ~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred CEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 9999999999988888778774 899999999999999863
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.1e-29 Score=263.79 Aligned_cols=284 Identities=21% Similarity=0.216 Sum_probs=170.2
Q ss_pred CCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCe
Q 038858 327 NMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEG 406 (740)
Q Consensus 327 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 406 (740)
.|+.....+.+++.++ .+|..+. ++|++|++++|.+++.....+..+++|++|++++|++.+..+..|..+++|++
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 3455556777777777 6776543 46777777777777766666677777777777777777666666777777777
Q ss_pred EEccCCcCcccCCCCCCCccCcceeeccCCcccCCCC-ccccCCCCccEEeccCCc-CCCCCCCCCCCCcCCccCchhhh
Q 038858 407 LHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIP-VAFCQLDSLQILGISDNN-ISGSLPSYLSYNRLNGSIPDRID 484 (740)
Q Consensus 407 L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~n~l~~~~~~~~~ 484 (740)
|++++|.+++..+..+..+++|++|++++|.+++... ..+..+++|++|++++|. +. +..+..+.
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-------------~~~~~~~~ 171 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT-------------KIQRKDFA 171 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-------------EECTTTTT
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc-------------ccCHHHcc
Confidence 7777777764444446666777777777777664443 356666777777776663 32 12234455
Q ss_pred ccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCcc
Q 038858 485 GLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIG 564 (740)
Q Consensus 485 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 564 (740)
++++|++|++++|.+++..+..+..+++|++|++++|.+....+..+ ..+++|+.|++++|.+++..+..+.
T Consensus 172 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~--------~~~~~L~~L~L~~n~l~~~~~~~l~ 243 (353)
T 2z80_A 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFV--------DVTSSVECLELRDTDLDTFHFSELS 243 (353)
T ss_dssp TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHH--------HHTTTEEEEEEESCBCTTCCCC---
T ss_pred CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhh--------hhcccccEEECCCCccccccccccc
Confidence 66666666666666666666666666666666666666542211111 1134555566665555543332221
Q ss_pred CCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCc----cCchhhhcCCCCCEEEccCCcccccCCCCCccccC
Q 038858 565 NLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNG----KIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFAT 640 (740)
Q Consensus 565 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 640 (740)
. ....+.++.++++++.+++ .+|..+..+++|++|++++|+++...+..+..+++
T Consensus 244 ~---------------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~ 302 (353)
T 2z80_A 244 T---------------------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTS 302 (353)
T ss_dssp ------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred c---------------------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCC
Confidence 1 1123444555555555543 34555666666666666666666444444466667
Q ss_pred CCccccCCCCCCCCCC
Q 038858 641 FNESNYKGNPFLCGLP 656 (740)
Q Consensus 641 l~~~~~~~Np~~C~~~ 656 (740)
|+.+++++||+.|+|+
T Consensus 303 L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 303 LQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCEEECCSSCBCCCHH
T ss_pred CCEEEeeCCCccCcCC
Confidence 7777777777777765
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=8.2e-28 Score=243.72 Aligned_cols=209 Identities=24% Similarity=0.297 Sum_probs=107.9
Q ss_pred CcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEccccc-ccccccc
Q 038858 427 GLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNN-LEGEVPV 505 (740)
Q Consensus 427 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 505 (740)
+|++|++++|.+++..+..|..+++|++|++++|.+++ ..|..+..+++|++|++++|. +....+.
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~-------------~~~~~~~~l~~L~~L~l~~n~~l~~~~~~ 99 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR-------------IDAAAFTGLALLEQLDLSDNAQLRSVDPA 99 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE-------------ECTTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccce-------------eCHhhcCCccCCCEEeCCCCCCccccCHH
Confidence 44444444444443333444444444444444444331 122334444444444444443 4433344
Q ss_pred cccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccch
Q 038858 506 QLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILS 585 (740)
Q Consensus 506 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 585 (740)
.+..+++|++|++++|.+.+..+..+.. +++|++|++++|.+.+..+..|..+++|++|++++|++++..+.
T Consensus 100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 171 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCGLQELGPGLFRG--------LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171 (285)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTT--------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred HhcCCcCCCEEECCCCcCCEECHhHhhC--------CcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence 4455555555555555555444444433 34555555555555544444455555666666666655554444
Q ss_pred hccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCCCCCC
Q 038858 586 TFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLP 656 (740)
Q Consensus 586 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~ 656 (740)
.|..+++|++|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|+.+++++|||.|+|+
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 55556666666666666655555555556666666666666655544445555566666666666666665
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=4.8e-28 Score=253.51 Aligned_cols=283 Identities=21% Similarity=0.211 Sum_probs=216.1
Q ss_pred CCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeE
Q 038858 304 LPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWL 383 (740)
Q Consensus 304 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 383 (740)
++.....+.+++.++ .+|..+. ++|++|++++|.++ .++...+.++++|++|++++|.+.+..+..+.++++|++|
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 566777899999998 4666554 58999999999998 6776566689999999999999999888889999999999
Q ss_pred EccCCcccccCccccccCCCCCeEEccCCcCcccCC-CCCCCccCcceeeccCC-cccCCCCccccCCCCccEEeccCCc
Q 038858 384 LLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIP-QWLGNLTGLQYIIIPEN-HLEGPIPVAFCQLDSLQILGISDNN 461 (740)
Q Consensus 384 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~n~ 461 (740)
++++|++.+..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++| .+.+..+..+..+++|++|++++|.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 999999997777678999999999999999985444 47889999999999999 4776777889999999999999998
Q ss_pred CCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhh
Q 038858 462 ISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRV 541 (740)
Q Consensus 462 l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 541 (740)
+.+ ..|..+..+++|++|++++|.+.......+..+++|+.|++++|.+++..+..+...
T Consensus 186 l~~-------------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~------- 245 (353)
T 2z80_A 186 LQS-------------YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG------- 245 (353)
T ss_dssp CCE-------------ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------------
T ss_pred cCc-------------cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccc-------
Confidence 873 446678889999999999999976555556678999999999999987655443221
Q ss_pred ccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCC----ccchhccCcCCCcEEECCCCcCCccCchhhhcCCCC
Q 038858 542 LSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTG----TILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNAL 617 (740)
Q Consensus 542 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 617 (740)
...+.++.++|+++.+++ .+|..+..+++|++|++++|+++...+..|..+++|
T Consensus 246 ----------------------~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L 303 (353)
T 2z80_A 246 ----------------------ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSL 303 (353)
T ss_dssp -----------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ----------------------cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCC
Confidence 112234444444444443 245556666666666666666663322224666666
Q ss_pred CEEEccCCcccccCC
Q 038858 618 VVFSVAYNNLSGKIP 632 (740)
Q Consensus 618 ~~L~l~~N~l~~~~~ 632 (740)
++|++++|++++..|
T Consensus 304 ~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 304 QKIWLHTNPWDCSCP 318 (353)
T ss_dssp CEEECCSSCBCCCHH
T ss_pred CEEEeeCCCccCcCC
Confidence 667777666665433
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.3e-27 Score=245.15 Aligned_cols=230 Identities=24% Similarity=0.264 Sum_probs=114.2
Q ss_pred cCcEEEcCCccccccCCcCCCCCCCCCeEEccCCccccc--CccccccCCCCCeEEccCCcCcccCCCCCCCccCcceee
Q 038858 355 NLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEE--IPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYII 432 (740)
Q Consensus 355 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 432 (740)
+|++|++++|.+.......+..+++|++|++++|++... .+..+..+++|++|++++|.+. .++..+..+++|++|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEE
Confidence 444444444444443333344445555555555544322 1233344455555555555544 2233344444444444
Q ss_pred ccCCcccCCCC-ccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCC
Q 038858 433 IPENHLEGPIP-VAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLN 511 (740)
Q Consensus 433 l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 511 (740)
+++|.+++..+ ..+..+++|++|++++|. +.+..+..+..++
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-------------------------------------l~~~~~~~~~~l~ 150 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTH-------------------------------------TRVAFNGIFNGLS 150 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSC-------------------------------------CEECSTTTTTTCT
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCc-------------------------------------CCccchhhcccCc
Confidence 44444443322 233444444444444443 3333333344444
Q ss_pred cccEEeCCCccccC-CCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCc
Q 038858 512 QLQLLDLSDNKLHG-LIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNL 590 (740)
Q Consensus 512 ~L~~L~L~~n~l~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 590 (740)
+|++|++++|.+.+ ..|..+.. +++|+.|++++|.+++..|..+..+++|++|+|++|.+++..+..+..+
T Consensus 151 ~L~~L~l~~n~l~~~~~~~~~~~--------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 222 (306)
T 2z66_A 151 SLEVLKMAGNSFQENFLPDIFTE--------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222 (306)
T ss_dssp TCCEEECTTCEEGGGEECSCCTT--------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTC
T ss_pred CCCEEECCCCccccccchhHHhh--------CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCc
Confidence 44444444444433 22333332 3345555555555554445555666666666666666665555566666
Q ss_pred CCCcEEECCCCcCCccCchhhhcCC-CCCEEEccCCccccc
Q 038858 591 RHIESLDLYHNKLNGKIPCQLVELN-ALVVFSVAYNNLSGK 630 (740)
Q Consensus 591 ~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~ 630 (740)
++|++|++++|++++..|..+..++ +|++|++++|++++.
T Consensus 223 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred ccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 6666666666666666666666653 666666666666643
No 56
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=7.3e-30 Score=287.66 Aligned_cols=235 Identities=16% Similarity=0.102 Sum_probs=117.8
Q ss_pred hhcCCCCCCEEEccCCCCcccCchHhhhcCCCCCEEeccCCcccCCCC-CCCCCCCCcCEEeccCCcCcccCChhHhhcC
Q 038858 226 FLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFR-LPIHSHKSLRLLDVSNNNFQGRIPAEIGDIL 304 (740)
Q Consensus 226 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 304 (740)
.+..+++|+.++++++.. +.+|.. +..+++|++|++++|.+++... ..+..+++|++|+++ +.+.+.....+...+
T Consensus 265 ~l~~~~~L~~L~l~~~~~-~~l~~~-~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~ 341 (592)
T 3ogk_B 265 NLVFPRKLCRLGLSYMGP-NEMPIL-FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYC 341 (592)
T ss_dssp CCCCCTTCCEEEETTCCT-TTGGGG-GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHC
T ss_pred HhhccccccccCccccch-hHHHHH-HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhC
Confidence 334445555555555322 123332 2455555555555555432211 113445566666665 333323333333345
Q ss_pred CCCcEEEccC-----------CcCccc-CCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcC----Cccccc
Q 038858 305 PSLSSFNISM-----------NALDGS-IPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLS----NNNLEG 368 (740)
Q Consensus 305 ~~L~~L~l~~-----------n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~----~n~l~~ 368 (740)
++|++|++++ +.+++. .+..+..+++|++|+++.+.+++..+..+...+++|++|+++ .|.+++
T Consensus 342 ~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~ 421 (592)
T 3ogk_B 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITD 421 (592)
T ss_dssp TTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSS
T ss_pred CCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccC
Confidence 6666666662 333322 111233456666666666666544444444446666666664 344443
Q ss_pred cC-----CcCCCCCCCCCeEEccCCc--ccccCccccc-cCCCCCeEEccCCcCcc-cCCCCCCCccCcceeeccCCccc
Q 038858 369 HM-----FSKNFNLTKLSWLLLEDNH--FVEEIPQSLS-KCLSLEGLHLNNNNLSG-KIPQWLGNLTGLQYIIIPENHLE 439 (740)
Q Consensus 369 ~~-----~~~~~~l~~L~~L~l~~n~--~~~~~~~~~~-~l~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~n~~~ 439 (740)
.+ ...+.++++|+.|++++|. ++......+. .+++|++|++++|.+++ ..+..+.++++|++|++++|.++
T Consensus 422 ~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 422 LPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred chHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence 21 1113346667777765433 3333222222 36667777777776654 22333455677777777777765
Q ss_pred CC-CCccccCCCCccEEeccCCcCC
Q 038858 440 GP-IPVAFCQLDSLQILGISDNNIS 463 (740)
Q Consensus 440 ~~-~~~~~~~~~~L~~L~l~~n~l~ 463 (740)
+. .+..+..+++|++|++++|+++
T Consensus 502 ~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 502 ERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp HHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred HHHHHHHHHhcCccCeeECcCCcCC
Confidence 33 2223345677777777777765
No 57
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=5.2e-30 Score=288.86 Aligned_cols=433 Identities=12% Similarity=0.092 Sum_probs=273.3
Q ss_pred HHHHhcCCCCCEEEcCCCCCC---CcCCCCCCC------------CCCCCCEEecCCCccccCccchHHHhccCCC-CcE
Q 038858 50 QSIASIFPSLKSLSMIDCKVN---GVVRSQGFP------------HFKSLEYLDMNTACIALNASFLQIIGASMPF-LKY 113 (740)
Q Consensus 50 ~~l~~~l~~L~~L~l~~~~~~---~~~~~~~l~------------~l~~L~~L~L~~~~i~~~~~~~~~l~~~l~~-L~~ 113 (740)
..+...+++|++|++++|... +.+|.. +. .+++|++|+|++| .+.+..+..+...++. |++
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~~~~L~~L~L~~~--~i~~~~~~~l~~~~~~~L~~ 142 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPEN-WGGYVTPWVTEISNNLRQLKSVHFRRM--IVSDLDLDRLAKARADDLET 142 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTT-SCCBCHHHHHHHHHHCTTCCEEEEESC--BCCHHHHHHHHHHHGGGCCE
T ss_pred HHHHHhCCCCeEEEecCCcchhhccccccc-ccccchHHHHHHHhhCCCCCeEEeecc--EecHHHHHHHHHhccccCcE
Confidence 333333777888888775431 122211 22 5788888888888 5556666666553444 888
Q ss_pred EEccCcccccCCCCCCccccCCCCCCCEEEccCCccccc----cCccccCCCCCCEEEccCCcCccccCCCchhhccccc
Q 038858 114 LSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGS----LPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNN 189 (740)
Q Consensus 114 L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 189 (740)
|++++|.... ...++. ....+++|++|++++|.+.+. ++.....+++|++|++++|.+++...
T Consensus 143 L~L~~~~~~~-~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~----------- 209 (592)
T 3ogk_B 143 LKLDKCSGFT-TDGLLS-IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISP----------- 209 (592)
T ss_dssp EEEESCEEEE-HHHHHH-HHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCH-----------
T ss_pred EECcCCCCcC-HHHHHH-HHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCH-----------
Confidence 8888775210 001111 234678888888888887654 23345667888999888887652110
Q ss_pred ccchhcccccCCCCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCchHhhhcCCCCCEEeccCCccc
Q 038858 190 EINAEITESHSLTAPNFQLKSLSLSSGYEDGVTFPKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLA 269 (740)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 269 (740)
..++..+..+++|+.|++++|.+.+ ++.. +..+++|++|+++.....
T Consensus 210 -------------------------------~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~-~~~~~~L~~L~l~~~~~~ 256 (592)
T 3ogk_B 210 -------------------------------KDLETIARNCRSLVSVKVGDFEILE-LVGF-FKAAANLEEFCGGSLNED 256 (592)
T ss_dssp -------------------------------HHHHHHHHHCTTCCEEECSSCBGGG-GHHH-HHHCTTCCEEEECBCCCC
T ss_pred -------------------------------HHHHHHHhhCCCCcEEeccCccHHH-HHHH-HhhhhHHHhhcccccccc
Confidence 0123344556778888888877764 4444 477788888888753222
Q ss_pred ---CCCCCCCCCCCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCC-ccccCCCCCcEEEeecccCCCcc
Q 038858 270 ---GPFRLPIHSHKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIP-SSFGNMNFLQILDLSNNHLTGEI 345 (740)
Q Consensus 270 ---~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~ 345 (740)
......+..+++|+.++++++... .+|..+. .+++|++|++++|.+++... ..+..+++|++|+++ +.+.+..
T Consensus 257 ~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~-~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~ 333 (592)
T 3ogk_B 257 IGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFP-FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRG 333 (592)
T ss_dssp TTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGG-GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHH
T ss_pred cchHHHHHHhhccccccccCccccchh-HHHHHHh-hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHH
Confidence 223345667788888888876433 4554433 37788888888888764333 345778888888888 4444344
Q ss_pred ChhhhhcCccCcEEEcCC-----------ccccccCCcC-CCCCCCCCeEEccCCcccccCcccccc-CCCCCeEEcc--
Q 038858 346 PEHLAIGCVNLEILVLSN-----------NNLEGHMFSK-NFNLTKLSWLLLEDNHFVEEIPQSLSK-CLSLEGLHLN-- 410 (740)
Q Consensus 346 ~~~~~~~l~~L~~L~L~~-----------n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~l~-- 410 (740)
...+...+++|++|++++ +.+++..... ...+++|++|+++.+.+++.....+.. +++|++|+++
T Consensus 334 l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 413 (592)
T 3ogk_B 334 LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLL 413 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEEC
T ss_pred HHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeec
Confidence 444445688888888883 4554332222 235788999998888877665555554 8889999986
Q ss_pred --CCcCccc-----CCCCCCCccCcceeeccCCc--ccCCCCccc-cCCCCccEEeccCCcCCCCCCCCCCCCcCCccCc
Q 038858 411 --NNNLSGK-----IPQWLGNLTGLQYIIIPENH--LEGPIPVAF-CQLDSLQILGISDNNISGSLPSYLSYNRLNGSIP 480 (740)
Q Consensus 411 --~n~i~~~-----~~~~l~~l~~L~~L~l~~n~--~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~ 480 (740)
.|.+++. ++..+.++++|+.|+++.|. +++.....+ ..+++|++|++++|++++. .++
T Consensus 414 ~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~------------~~~ 481 (592)
T 3ogk_B 414 DREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE------------GLM 481 (592)
T ss_dssp SCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH------------HHH
T ss_pred CCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHH------------HHH
Confidence 4455532 12224568889999987543 443333333 3478899999998887621 344
Q ss_pred hhhhccccCcEEEccccccccc-ccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCc
Q 038858 481 DRIDGLLRLSHLILAHNNLEGE-VPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCN 553 (740)
Q Consensus 481 ~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n 553 (740)
..+.++++|++|++++|.+++. .+.....+++|+.|++++|++++.....+.. .++.+....+..+
T Consensus 482 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~-------~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 482 EFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQM-------ARPYWNIELIPSR 548 (592)
T ss_dssp HHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGG-------CCTTEEEEEECCC
T ss_pred HHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHH-------hCCCcEEEEecCc
Confidence 5567788999999999987644 3344567889999999999987654433332 1355555555443
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.6e-26 Score=234.29 Aligned_cols=85 Identities=21% Similarity=0.223 Sum_probs=39.1
Q ss_pred ccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEcc
Q 038858 544 LLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVA 623 (740)
Q Consensus 544 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 623 (740)
+|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 154 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 233 (285)
T 1ozn_A 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred CccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEecc
Confidence 33444444444333333334444444444444444444444444444445555555554444443444444455555555
Q ss_pred CCccc
Q 038858 624 YNNLS 628 (740)
Q Consensus 624 ~N~l~ 628 (740)
+|++.
T Consensus 234 ~N~~~ 238 (285)
T 1ozn_A 234 DNPWV 238 (285)
T ss_dssp SSCEE
T ss_pred CCCcc
Confidence 55444
No 59
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=2.1e-26 Score=237.41 Aligned_cols=236 Identities=21% Similarity=0.320 Sum_probs=184.9
Q ss_pred CCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEe
Q 038858 377 LTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILG 456 (740)
Q Consensus 377 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 456 (740)
.++++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 456677777777766 44555666777778888777777 66777777788888888888777 5567777788888888
Q ss_pred ccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCccccccc
Q 038858 457 ISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTAL 536 (740)
Q Consensus 457 l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 536 (740)
+++|.+.+.+|..+.... .+..+.++++|++|++++|.++ .+|..+..+++|++|++++|.+++. |..+..
T Consensus 157 L~~n~~~~~~p~~~~~~~----~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l-~~~l~~--- 227 (328)
T 4fcg_A 157 IRACPELTELPEPLASTD----ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL-GPAIHH--- 227 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-----CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCC-CGGGGG---
T ss_pred CCCCCCccccChhHhhcc----chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcC-chhhcc---
Confidence 888777766665443322 2233566888999999999888 6777888889999999999988854 334544
Q ss_pred chhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCC
Q 038858 537 HERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNA 616 (740)
Q Consensus 537 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 616 (740)
+++|+.|++++|.+.+.+|..+..+++|++|+|++|.+.+.+|..+..+++|++|++++|++.+.+|+.+..+++
T Consensus 228 -----l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 228 -----LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302 (328)
T ss_dssp -----CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred -----CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence 678999999998888888888999999999999999888888888999999999999999998899999999999
Q ss_pred CCEEEccCCcccc
Q 038858 617 LVVFSVAYNNLSG 629 (740)
Q Consensus 617 L~~L~l~~N~l~~ 629 (740)
|+.+++..|.+..
T Consensus 303 L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 303 NCIILVPPHLQAQ 315 (328)
T ss_dssp TCEEECCGGGSCC
T ss_pred ceEEeCCHHHHHH
Confidence 9999888776653
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=8.2e-26 Score=244.81 Aligned_cols=248 Identities=25% Similarity=0.266 Sum_probs=164.4
Q ss_pred CcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEcc
Q 038858 331 LQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLN 410 (740)
Q Consensus 331 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 410 (740)
.+.++.++..++ .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+.+..+..|..+++|++|+++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 456777777777 6776542 577888888888887777777778888888888888877777777778888888888
Q ss_pred CCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCc
Q 038858 411 NNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLS 490 (740)
Q Consensus 411 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~ 490 (740)
+|.++...+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|...+. ..+..|.++++|+
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~------------i~~~~~~~l~~L~ 199 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY------------ISEGAFEGLFNLK 199 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE------------ECTTTTTTCTTCC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccc------------cChhhccCCCCCC
Confidence 8887766666677777888888888877766666777777777777777443221 1223455666667
Q ss_pred EEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCc
Q 038858 491 HLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQ 570 (740)
Q Consensus 491 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 570 (740)
+|++++|.+++. | .+..+++|+.|++++|.+.+..|..|.. +++|+.|++++|.+.+..+..|..+++|+
T Consensus 200 ~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 269 (452)
T 3zyi_A 200 YLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHG--------LSSLKKLWVMNSQVSLIERNAFDGLASLV 269 (452)
T ss_dssp EEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTT--------CTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred EEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccC--------ccCCCEEEeCCCcCceECHHHhcCCCCCC
Confidence 777776666633 2 3555666666666666666555555544 44566666666666555555555566666
Q ss_pred EEeCcCCcCCCccchhccCcCCCcEEECCCCcCC
Q 038858 571 TLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLN 604 (740)
Q Consensus 571 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 604 (740)
.|+|++|++++..+..|..+++|+.|+|++|++.
T Consensus 270 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp EEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred EEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 6666666665555555555566666666666554
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=9.9e-26 Score=243.25 Aligned_cols=248 Identities=27% Similarity=0.306 Sum_probs=168.0
Q ss_pred CcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEcc
Q 038858 331 LQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLN 410 (740)
Q Consensus 331 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 410 (740)
.+.++.++..++ .+|..+. ++++.|++++|.+....+..|.++++|++|++++|.+.+..+..|..+++|++|+++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 446666666666 6666543 567777777777777777777778888888888888777777777788888888888
Q ss_pred CCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCc
Q 038858 411 NNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLS 490 (740)
Q Consensus 411 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~ 490 (740)
+|.+++..+..+..+++|++|++++|.+....+..|..+++|++|++++|...+. ..+..|.++++|+
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~------------i~~~~~~~l~~L~ 188 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY------------ISEGAFEGLSNLR 188 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE------------ECTTTTTTCSSCC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcce------------eCcchhhcccccC
Confidence 8888766666777788888888888887766666777777888888777543321 2223466667777
Q ss_pred EEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCc
Q 038858 491 HLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQ 570 (740)
Q Consensus 491 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 570 (740)
+|++++|.++. +| .+..+++|+.|++++|.+++..|..|.. +++|+.|++++|.+++..+..|..+++|+
T Consensus 189 ~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 258 (440)
T 3zyj_A 189 YLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQG--------LMHLQKLWMIQSQIQVIERNAFDNLQSLV 258 (440)
T ss_dssp EEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTT--------CTTCCEEECTTCCCCEECTTSSTTCTTCC
T ss_pred eecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhcc--------CccCCEEECCCCceeEEChhhhcCCCCCC
Confidence 77777777663 23 3556666666666666666655555554 45666666666666666666666666666
Q ss_pred EEeCcCCcCCCccchhccCcCCCcEEECCCCcCC
Q 038858 571 TLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLN 604 (740)
Q Consensus 571 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 604 (740)
.|+|++|++++..+..|..+++|+.|+|++|++.
T Consensus 259 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 259 EINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp EEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred EEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 6666666666655566666666666666666654
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=3.3e-26 Score=235.97 Aligned_cols=226 Identities=20% Similarity=0.226 Sum_probs=205.5
Q ss_pred cCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccC
Q 038858 400 KCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSI 479 (740)
Q Consensus 400 ~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~ 479 (740)
..+.+++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~--------------~l 142 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR--------------AL 142 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC--------------CC
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc--------------cC
Confidence 3578999999999998 77888888999999999999999 78888999999999999999987 67
Q ss_pred chhhhccccCcEEEcccccccccccccccC---------CCcccEEeCCCccccCCCCCcccccccchhhhccccceEEc
Q 038858 480 PDRIDGLLRLSHLILAHNNLEGEVPVQLCG---------LNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDL 550 (740)
Q Consensus 480 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~---------l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 550 (740)
|..+..+++|++|++++|.+.+..|..+.. +++|++|++++|.++ .+|..+.. +++|+.|++
T Consensus 143 p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~--------l~~L~~L~L 213 (328)
T 4fcg_A 143 PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN--------LQNLKSLKI 213 (328)
T ss_dssp CGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGG--------CTTCCEEEE
T ss_pred cHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcC--------CCCCCEEEc
Confidence 788999999999999999888888877654 999999999999998 56666655 679999999
Q ss_pred cCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCccccc
Q 038858 551 SCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGK 630 (740)
Q Consensus 551 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 630 (740)
++|.+++ +|..+..+++|++|+|++|.+.+.+|..|..+++|++|++++|++.+.+|..+..+++|++|++++|++.+.
T Consensus 214 ~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 214 RNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp ESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred cCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence 9999995 666799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccCCCccccCCCCC
Q 038858 631 IPEMTTQFATFNESNYKGNPF 651 (740)
Q Consensus 631 ~~~~~~~~~~l~~~~~~~Np~ 651 (740)
+|..+..+++++.+++..|..
T Consensus 293 iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 293 LPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CCGGGGGSCTTCEEECCGGGS
T ss_pred ccHHHhhccCceEEeCCHHHH
Confidence 999999999999888876644
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=8.1e-25 Score=242.49 Aligned_cols=265 Identities=25% Similarity=0.283 Sum_probs=137.7
Q ss_pred CcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEE
Q 038858 281 SLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILV 360 (740)
Q Consensus 281 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 360 (740)
+++.|++++|.++ .+|..+. ++|++|++++|.++. +|. .+++|++|++++|+++ .+|. .+++|++|+
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~ 107 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELS 107 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEE
T ss_pred CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEE
Confidence 4667777777766 6665443 567777777776663 343 3566777777777766 4554 356666666
Q ss_pred cCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccC
Q 038858 361 LSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEG 440 (740)
Q Consensus 361 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~ 440 (740)
+++|.+++... .+++|+.|++++|++... |. .+++|++|++++|.+++ +|. .+++|+.|++++|.+++
T Consensus 108 Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 108 IFSNPLTHLPA----LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp ECSCCCCCCCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred CcCCcCCCCCC----CCCCcCEEECCCCCCCcC-CC---CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC
Confidence 66666665432 345666666666665542 22 13566666666666553 222 23455666666666553
Q ss_pred CCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCC
Q 038858 441 PIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSD 520 (740)
Q Consensus 441 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 520 (740)
. | ..+++|+.|++++|.+++ +|. .+++|+.|++++|.++. +|. .+++|+.|++++
T Consensus 176 l-~---~~~~~L~~L~Ls~N~l~~--------------l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~ 230 (622)
T 3g06_A 176 L-P---MLPSGLQELSVSDNQLAS--------------LPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSG 230 (622)
T ss_dssp C-C---CCCTTCCEEECCSSCCSC--------------CCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCS
T ss_pred C-c---ccCCCCcEEECCCCCCCC--------------CCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccC
Confidence 2 2 234555666666555541 111 12455555555555542 221 124455555555
Q ss_pred ccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCC
Q 038858 521 NKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYH 600 (740)
Q Consensus 521 n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 600 (740)
|.+++. |. . +++|+.|++++|.++. +|. .+++|+.|+|++|+++ .+|..|.++++|+.|+|++
T Consensus 231 N~L~~l-p~---~--------l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 231 NRLTSL-PV---L--------PSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293 (622)
T ss_dssp SCCSCC-CC---C--------CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCS
T ss_pred CccCcC-CC---C--------CCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecC
Confidence 555432 11 0 2345555555555542 222 3344555555555554 3344445555555555555
Q ss_pred CcCCccCchhhh
Q 038858 601 NKLNGKIPCQLV 612 (740)
Q Consensus 601 N~l~~~~~~~~~ 612 (740)
|++++..|..+.
T Consensus 294 N~l~~~~~~~l~ 305 (622)
T 3g06_A 294 NPLSERTLQALR 305 (622)
T ss_dssp CCCCHHHHHHHH
T ss_pred CCCCCcCHHHHH
Confidence 555444444443
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=6.9e-27 Score=254.31 Aligned_cols=247 Identities=21% Similarity=0.171 Sum_probs=160.7
Q ss_pred CCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEe
Q 038858 377 LTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILG 456 (740)
Q Consensus 377 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 456 (740)
+++|++|++++|.+.+..|..|..+++|++|++++|.+++..+ +..+++|++|++++|.+++.. ..++|+.|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEE
Confidence 3455555565555555555555566666666666666554333 555666666666666655322 125666666
Q ss_pred ccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCccccccc
Q 038858 457 ISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTAL 536 (740)
Q Consensus 457 l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 536 (740)
+++|.+++.. + ..+++|+.|++++|.+++..|..++.+++|+.|++++|.+++..|..+..
T Consensus 106 L~~N~l~~~~-------------~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~--- 166 (487)
T 3oja_A 106 AANNNISRVS-------------C---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA--- 166 (487)
T ss_dssp CCSSCCCCEE-------------E---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG---
T ss_pred CcCCcCCCCC-------------c---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh---
Confidence 6666665221 1 12356677777777777666666667777777777777776655555431
Q ss_pred chhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCC
Q 038858 537 HERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNA 616 (740)
Q Consensus 537 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 616 (740)
.+++|+.|++++|.+++.. ....+++|+.|+|++|.+++..+ .+..+++|+.|++++|.+++ +|..+..+++
T Consensus 167 ----~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~ 238 (487)
T 3oja_A 167 ----SSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQN 238 (487)
T ss_dssp ----GTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTT
T ss_pred ----hCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCC
Confidence 1457777777777777552 23357788888888888886444 47788888888888888884 6667778888
Q ss_pred CCEEEccCCccc-ccCCCCCccccCCCccccC-------CCCCCCCCCC
Q 038858 617 LVVFSVAYNNLS-GKIPEMTTQFATFNESNYK-------GNPFLCGLPL 657 (740)
Q Consensus 617 L~~L~l~~N~l~-~~~~~~~~~~~~l~~~~~~-------~Np~~C~~~~ 657 (740)
|+.|++++|++. +.+|..+..++.++.+++. +||+.|.|+.
T Consensus 239 L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~ 287 (487)
T 3oja_A 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287 (487)
T ss_dssp CCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred CCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCCc
Confidence 888888888887 4555555666666666665 8999998763
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=3.6e-27 Score=242.56 Aligned_cols=257 Identities=20% Similarity=0.186 Sum_probs=141.2
Q ss_pred CcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEcc
Q 038858 331 LQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLN 410 (740)
Q Consensus 331 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 410 (740)
++..+++.+.+. ..+...+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+ +..+++|++|+++
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 344455555554 4444455556677777777777776665566667777777777777665443 6666777777777
Q ss_pred CCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCc
Q 038858 411 NNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLS 490 (740)
Q Consensus 411 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~ 490 (740)
+|.+++.. ..++|++|++++|.+++..+. .+++|++|++++|++++ ..+..+..+++|+
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~-------------~~~~~~~~l~~L~ 147 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITM-------------LRDLDEGCRSRVQ 147 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCS-------------GGGBCTGGGSSEE
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCC-------------ccchhhhccCCCC
Confidence 77665322 225666666666666544332 24556666666666542 2223455556666
Q ss_pred EEEcccccccccccccc-cCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcC
Q 038858 491 HLILAHNNLEGEVPVQL-CGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRI 569 (740)
Q Consensus 491 ~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 569 (740)
+|++++|.+++..+..+ ..+++|++|++++|.+++..+..+ +++|+.|++++|.+++. |..+..+++|
T Consensus 148 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~----------l~~L~~L~Ls~N~l~~l-~~~~~~l~~L 216 (317)
T 3o53_A 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV----------FAKLKTLDLSSNKLAFM-GPEFQSAAGV 216 (317)
T ss_dssp EEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC----------CTTCCEEECCSSCCCEE-CGGGGGGTTC
T ss_pred EEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccc----------cccCCEEECCCCcCCcc-hhhhcccCcc
Confidence 66666666655544444 245566666666665554321111 34555555555555532 2234555555
Q ss_pred cEEeCcCCcCCCccchhccCcCCCcEEECCCCcCC-ccCchhhhcCCCCCEEEcc
Q 038858 570 QTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLN-GKIPCQLVELNALVVFSVA 623 (740)
Q Consensus 570 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~l~ 623 (740)
+.|+|++|++++ +|..+..+++|+.|++++|++. +..|..+..+++|+.++++
T Consensus 217 ~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 217 TWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp SEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred cEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 555555555552 3444555555555555555554 4444444555555555554
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=4e-27 Score=242.16 Aligned_cols=261 Identities=20% Similarity=0.160 Sum_probs=205.7
Q ss_pred cCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeecc
Q 038858 355 NLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIP 434 (740)
Q Consensus 355 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~ 434 (740)
+++..+++.+.+.......+..+++|++|++++|++.+..+..+..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 34555666666665555555567889999999999988877888899999999999999875544 7888999999999
Q ss_pred CCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCccc
Q 038858 435 ENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQ 514 (740)
Q Consensus 435 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 514 (740)
+|.+++.. ..++|++|++++|++++.. + ..+++|++|++++|.+++..+..+..+++|+
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~-------------~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 147 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVS-------------C---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQ 147 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEE-------------E---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEE
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcC-------------c---cccCCCCEEECCCCCCCCccchhhhccCCCC
Confidence 99887432 3488999999999887321 1 2357799999999999888788888899999
Q ss_pred EEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCc
Q 038858 515 LLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIE 594 (740)
Q Consensus 515 ~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 594 (740)
+|++++|.+.+..+..+.. .+++|+.|++++|.+++.. ....+++|++|+|++|++++. +..+..+++|+
T Consensus 148 ~L~Ls~N~l~~~~~~~~~~-------~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~ 217 (317)
T 3o53_A 148 YLDLKLNEIDTVNFAELAA-------SSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVT 217 (317)
T ss_dssp EEECTTSCCCEEEGGGGGG-------GTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCS
T ss_pred EEECCCCCCCcccHHHHhh-------ccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcc-hhhhcccCccc
Confidence 9999999988766655531 1578999999999998652 334588999999999999864 44588899999
Q ss_pred EEECCCCcCCccCchhhhcCCCCCEEEccCCccc-ccCCCCCccccCCCccccCCC
Q 038858 595 SLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLS-GKIPEMTTQFATFNESNYKGN 649 (740)
Q Consensus 595 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~~~~~~N 649 (740)
+|++++|+++ .+|..+..+++|+.|++++|+++ +..|..+..++.++.+++.++
T Consensus 218 ~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 218 WISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp EEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred EEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 9999999998 56777888899999999999998 666777777778888777743
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=2.7e-25 Score=224.02 Aligned_cols=209 Identities=23% Similarity=0.277 Sum_probs=165.4
Q ss_pred cCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccc
Q 038858 426 TGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPV 505 (740)
Q Consensus 426 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 505 (740)
++|++|++++|.+++..+..|..+++|++|++++|.+.+ ..+..|..+++|++|++++|.+++..+.
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-------------IEDGAYQSLSHLSTLILTGNPIQSLALG 94 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCE-------------ECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCc-------------cCHHHccCCcCCCEEECCCCccCccChh
Confidence 457777777777766665667777777777777776652 2334566677777777777777777777
Q ss_pred cccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCcccccc-CCcCccCCCcCcEEeCcCCcCCCccc
Q 038858 506 QLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGD-IPPQIGNLTRIQTLNLSHNNLTGTIL 584 (740)
Q Consensus 506 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~ 584 (740)
.+.++++|++|++++|.+.+..+..+.. +++|++|++++|.+.+. +|..+..+++|++|++++|++++..+
T Consensus 95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETNLASLENFPIGH--------LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCCCTT--------CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred hhcCCccccEEECCCCCccccCchhccc--------CCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 7788888888888888887766655555 56888888888888764 58889999999999999999998888
Q ss_pred hhccCcCCCc----EEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCCCCCC
Q 038858 585 STFTNLRHIE----SLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLP 656 (740)
Q Consensus 585 ~~~~~l~~L~----~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~ 656 (740)
..|..+++|+ +|++++|++++..+..+ ...+|+.|++++|++++..+..+..+++++.+++++|||.|+|+
T Consensus 167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp GGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred HHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 8888887777 89999999996655554 44589999999999998888888889999999999999999997
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=8.7e-27 Score=239.06 Aligned_cols=252 Identities=23% Similarity=0.247 Sum_probs=126.2
Q ss_pred ccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCcccccc-CCcCCC-------CCCCCCeEEccCCcccccCcc
Q 038858 325 FGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGH-MFSKNF-------NLTKLSWLLLEDNHFVEEIPQ 396 (740)
Q Consensus 325 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~-------~l~~L~~L~l~~n~~~~~~~~ 396 (740)
++..++|+.|++++|.+ .+|..+... |+.|++++|.+... .+..+. ++++|++|++++|++.+..|.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 34445666666666666 555554422 66666666666332 111111 355566666666665555554
Q ss_pred cc--ccCCCCCeEEccCCcCcccCCCCCCCc-----cCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCC
Q 038858 397 SL--SKCLSLEGLHLNNNNLSGKIPQWLGNL-----TGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSY 469 (740)
Q Consensus 397 ~~--~~l~~L~~L~l~~n~i~~~~~~~l~~l-----~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 469 (740)
.+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|++.+..+..|..+++|++|++++|++.+..
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--- 189 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER--- 189 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHH---
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcch---
Confidence 43 5556666666666665543 4444444 55666666666655555555555566666666655543210
Q ss_pred CCCCcCCccCchhh--hccccCcEEEcccccccc---cccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccc
Q 038858 470 LSYNRLNGSIPDRI--DGLLRLSHLILAHNNLEG---EVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSL 544 (740)
Q Consensus 470 l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~ 544 (740)
..+..+ ..+++|++|++++|.+++ .....+..+++|++|++++|.+.+..|.
T Consensus 190 --------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--------------- 246 (312)
T 1wwl_A 190 --------GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA--------------- 246 (312)
T ss_dssp --------HHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC---------------
T ss_pred --------HHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch---------------
Confidence 011112 444555555555555542 1112233445555555555555443321
Q ss_pred cceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccC
Q 038858 545 LSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAY 624 (740)
Q Consensus 545 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~ 624 (740)
..+..+++|++|+|++|+++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++
T Consensus 247 ----------------~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 247 ----------------PSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKG 305 (312)
T ss_dssp ----------------SCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTT
T ss_pred ----------------hhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccC
Confidence 22333455555555555555 3333333 4555555555555533 33 55555555555555
Q ss_pred Ccccc
Q 038858 625 NNLSG 629 (740)
Q Consensus 625 N~l~~ 629 (740)
|++++
T Consensus 306 N~l~~ 310 (312)
T 1wwl_A 306 NPFLD 310 (312)
T ss_dssp CTTTC
T ss_pred CCCCC
Confidence 55543
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=2.5e-24 Score=238.59 Aligned_cols=265 Identities=24% Similarity=0.267 Sum_probs=149.7
Q ss_pred CCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEc
Q 038858 306 SLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLL 385 (740)
Q Consensus 306 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 385 (740)
+++.|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|+++++.. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEEC
Confidence 4666666666666 4444443 56666666666665 4554 25566666666666654332 4566666666
Q ss_pred cCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCC
Q 038858 386 EDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGS 465 (740)
Q Consensus 386 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 465 (740)
++|++.+..+ .+++|++|++++|.++. +|.. +++|++|++++|.+++. |. .+++|+.|++++|.++
T Consensus 109 s~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~-- 174 (622)
T 3g06_A 109 FSNPLTHLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLT-- 174 (622)
T ss_dssp CSCCCCCCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS--
T ss_pred cCCcCCCCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCC--
Confidence 6666654322 34566666666666653 3332 35666666666666532 21 2355666666666665
Q ss_pred CCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhcccc
Q 038858 466 LPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLL 545 (740)
Q Consensus 466 ~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L 545 (740)
.+| ..+++|+.|++++|.+++ +|. .+++|+.|++++|.++.... . +++|
T Consensus 175 ------------~l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~~-~-----------~~~L 223 (622)
T 3g06_A 175 ------------SLP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLPA-L-----------PSGL 223 (622)
T ss_dssp ------------CCC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCC-C-----------CTTC
T ss_pred ------------CCc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccCC-C-----------CCCC
Confidence 222 234566666666666653 222 23566666666666653221 1 2456
Q ss_pred ceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCC
Q 038858 546 SGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYN 625 (740)
Q Consensus 546 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 625 (740)
+.|++++|.+++ +| ..+++|+.|+|++|+++.. |. .+++|+.|+|++|+++ .+|..+..+++|+.|++++|
T Consensus 224 ~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~l-p~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 224 KELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSL-PM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp CEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSC
T ss_pred CEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcC-Cc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCC
Confidence 666666666663 33 3345666666666666632 22 4556666666666666 45556666666666666666
Q ss_pred cccccCCCCCc
Q 038858 626 NLSGKIPEMTT 636 (740)
Q Consensus 626 ~l~~~~~~~~~ 636 (740)
++++..|..+.
T Consensus 295 ~l~~~~~~~l~ 305 (622)
T 3g06_A 295 PLSERTLQALR 305 (622)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCCcCHHHHH
Confidence 66665554433
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.2e-24 Score=218.13 Aligned_cols=206 Identities=23% Similarity=0.310 Sum_probs=137.7
Q ss_pred CCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchh
Q 038858 403 SLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDR 482 (740)
Q Consensus 403 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~ 482 (740)
..++++++++.++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.+
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-------------------- 73 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-------------------- 73 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC--------------------
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc--------------------
Confidence 3556666666665 3443332 3555566665555544444555555555555555544
Q ss_pred hhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcC
Q 038858 483 IDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQ 562 (740)
Q Consensus 483 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 562 (740)
+...+..+..+++|++|++++|.+.+..+..|.. +++|+.|++++|.+++..+..
T Consensus 74 -----------------~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~ 128 (270)
T 2o6q_A 74 -----------------QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQ--------LVNLAELRLDRNQLKSLPPRV 128 (270)
T ss_dssp -----------------SCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTT--------CSSCCEEECCSSCCCCCCTTT
T ss_pred -----------------CeeChhhhcCCCCCCEEECCCCcCCcCCHhHccc--------ccCCCEEECCCCccCeeCHHH
Confidence 4333344455555555555555555544444443 446666666666666666666
Q ss_pred ccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCC
Q 038858 563 IGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFN 642 (740)
Q Consensus 563 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~ 642 (740)
|..+++|++|+|++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+
T Consensus 129 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (270)
T 2o6q_A 129 FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208 (270)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred hCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCC
Confidence 77778888888888888877667788888888888888888876666778888888888888888877777777888888
Q ss_pred ccccCCCCCCCCCC
Q 038858 643 ESNYKGNPFLCGLP 656 (740)
Q Consensus 643 ~~~~~~Np~~C~~~ 656 (740)
.+++++|||.|+|+
T Consensus 209 ~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 209 MLQLQENPWDCTCN 222 (270)
T ss_dssp EEECCSSCBCCSSS
T ss_pred EEEecCCCeeCCCc
Confidence 88899999999886
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=6.4e-28 Score=271.98 Aligned_cols=133 Identities=11% Similarity=0.088 Sum_probs=63.8
Q ss_pred CCCCCeEEccCCcccccCccccc-cCCCCCeEEcc--C----CcCcccC-----CCCCCCccCcceeeccCCcccCCCCc
Q 038858 377 LTKLSWLLLEDNHFVEEIPQSLS-KCLSLEGLHLN--N----NNLSGKI-----PQWLGNLTGLQYIIIPENHLEGPIPV 444 (740)
Q Consensus 377 l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~--~----n~i~~~~-----~~~l~~l~~L~~L~l~~n~~~~~~~~ 444 (740)
+++|+.|.+..+.++......+. .+++|++|+++ + +.+++.. +..+..+++|+.|++++ .+++....
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~ 449 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE 449 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence 45555555555554433333332 35556666655 2 2232110 01133455666666655 33333223
Q ss_pred cccC-CCCccEEeccCCcCCCCCCCCCCCCcCCccCchhh-hccccCcEEEcccccccccccc-cccCCCcccEEeCCCc
Q 038858 445 AFCQ-LDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRI-DGLLRLSHLILAHNNLEGEVPV-QLCGLNQLQLLDLSDN 521 (740)
Q Consensus 445 ~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n 521 (740)
.+.. +++|+.|++++|.+++ ..+..+ ..+++|++|++++|.+++.... ....+++|+.|++++|
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~-------------~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~ 516 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSD-------------LGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC 516 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSH-------------HHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESS
T ss_pred HHHHhchhccEeeccCCCCcH-------------HHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCC
Confidence 3333 5566666666665541 111122 4466666666666666433322 2334566666666666
Q ss_pred cc
Q 038858 522 KL 523 (740)
Q Consensus 522 ~l 523 (740)
++
T Consensus 517 ~~ 518 (594)
T 2p1m_B 517 SV 518 (594)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=9.4e-28 Score=270.60 Aligned_cols=314 Identities=16% Similarity=0.084 Sum_probs=181.2
Q ss_pred CCCCCCCEEeCCCCCCCC---CCCCC--------c-cccCCCCCCcEEECCCCCCcccchHHHHhcCCCCCEEEcCCC-C
Q 038858 2 GSFSSLNTLCLMDNNLTE---IVTTT--------T-QELHNFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDC-K 68 (740)
Q Consensus 2 ~~l~~L~~L~Ls~n~i~~---~~~~~--------~-~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~-~ 68 (740)
.++++|++|+++++.... ..|.. + .....+++|++|++++|.+.+..+..+...+++|++|++++| .
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence 358899999999976321 11100 0 113468999999999999988888888744999999999999 4
Q ss_pred CCCcCCCCCCCCCCCCCEEecCCCccccCccch---HHHhccCCCCcEEEccCcc--cccCCCCCCccccCCCCCCCEEE
Q 038858 69 VNGVVRSQGFPHFKSLEYLDMNTACIALNASFL---QIIGASMPFLKYLSLSYFT--FGTNSSRILDQGLCPLVHLQELH 143 (740)
Q Consensus 69 ~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~---~~l~~~l~~L~~L~Ls~~~--~~~~~~~~~~~~l~~l~~L~~L~ 143 (740)
+.+......+.++++|++|++++|.+ .+... ..+...+++|++|++++|. +. .......+..+++|++|+
T Consensus 143 ~~~~~l~~~~~~~~~L~~L~L~~~~i--~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~---~~~l~~l~~~~~~L~~L~ 217 (594)
T 2p1m_B 143 FSTDGLAAIAATCRNLKELDLRESDV--DDVSGHWLSHFPDTYTSLVSLNISCLASEVS---FSALERLVTRCPNLKSLK 217 (594)
T ss_dssp EEHHHHHHHHHHCTTCCEEECTTCEE--ECCCGGGGGGSCTTCCCCCEEECTTCCSCCC---HHHHHHHHHHCTTCCEEE
T ss_pred CCHHHHHHHHHhCCCCCEEeCcCCcc--CCcchHHHHHHhhcCCcCcEEEecccCCcCC---HHHHHHHHHhCCCCcEEe
Confidence 43211112234789999999999953 33332 2333348899999999886 11 111111234579999999
Q ss_pred ccCCccccccCccccCCCCCCEEEccCCcCccccCCCchhhcccccccchhcccccCCCCCCccccEEEccCCCCCCCCC
Q 038858 144 MANNDLRGSLPWCLANMTSLRTLDVSSNQLTGSISSSPLILDAYNNEINAEITESHSLTAPNFQLKSLSLSSGYEDGVTF 223 (740)
Q Consensus 144 L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 223 (740)
+++|...+.++..+..+++|++|+++.+... +..+.+.+... ....+++|+.|.- ........+
T Consensus 218 L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-----------~~~~~~~~l~~----~l~~~~~L~~Ls~-~~~~~~~~l 281 (594)
T 2p1m_B 218 LNRAVPLEKLATLLQRAPQLEELGTGGYTAE-----------VRPDVYSGLSV----ALSGCKELRCLSG-FWDAVPAYL 281 (594)
T ss_dssp CCTTSCHHHHHHHHHHCTTCSEEECSBCCCC-----------CCHHHHHHHHH----HHHTCTTCCEEEC-CBTCCGGGG
T ss_pred cCCCCcHHHHHHHHhcCCcceEcccccccCc-----------cchhhHHHHHH----HHhcCCCcccccC-CcccchhhH
Confidence 9999433347778889999999998766421 00111111110 1133345666621 111112234
Q ss_pred chhhcCCCCCCEEEccCCCCcccCchHhhhcCCCCCEEeccCCcccCCCCC-CCCCCCCcCEEeccC---------CcCc
Q 038858 224 PKFLHHQNKLEDVDLSHIKMNGEFPNWLLENNTKLESLSLVNDSLAGPFRL-PIHSHKSLRLLDVSN---------NNFQ 293 (740)
Q Consensus 224 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~---------n~l~ 293 (740)
+..+..+++|+.|++++|.+++.....+...+++|++|++++| +.+.... ....+++|++|++.+ +.++
T Consensus 282 ~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~ 360 (594)
T 2p1m_B 282 PAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALT 360 (594)
T ss_dssp GGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCC
T ss_pred HHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCC
Confidence 4444456677777777777655444444456666777766665 2211111 111355666666632 2333
Q ss_pred ccCChhHhhcCCCCcEEEccCCcCcccCCcccc-CCCCCcEEEee
Q 038858 294 GRIPAEIGDILPSLSSFNISMNALDGSIPSSFG-NMNFLQILDLS 337 (740)
Q Consensus 294 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~ 337 (740)
+.....+...+++|++|.+..+.+++..+..+. .+++|+.|+++
T Consensus 361 ~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 361 EQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence 222223333355666665555555543333333 35566666665
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=6.8e-27 Score=239.84 Aligned_cols=249 Identities=22% Similarity=0.266 Sum_probs=173.6
Q ss_pred CCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcc-cCCCCCC-------CccCcceeeccCCcccCCCCccc-
Q 038858 376 NLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSG-KIPQWLG-------NLTGLQYIIIPENHLEGPIPVAF- 446 (740)
Q Consensus 376 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~l~-------~l~~L~~L~l~~n~~~~~~~~~~- 446 (740)
..++|+.|++++|.+ .+|..+... |++|++++|.+.. ..+..+. ++++|++|++++|.+++..|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 344556666666665 334433332 5566666665532 2332222 45666777777776666555554
Q ss_pred -cCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhcc-----ccCcEEEcccccccccccccccCCCcccEEeCCC
Q 038858 447 -CQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGL-----LRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSD 520 (740)
Q Consensus 447 -~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 520 (740)
..+++|++|++++|++++ .|..+..+ ++|++|++++|.+++..+..++.+++|++|++++
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~--------------~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 182 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWAT--------------RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD 182 (312)
T ss_dssp SCCSCCCSEEEEESCBCSS--------------SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCS
T ss_pred HhcCCCccEEEccCCCCcc--------------hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCC
Confidence 667777777777776652 24445555 7788888888887777777788888888888888
Q ss_pred ccccCCC--CCcccccccchhhhccccceEEccCccccc---cCCcCccCCCcCcEEeCcCCcCCCccc-hhccCcCCCc
Q 038858 521 NKLHGLI--PPCFDNTALHERRVLSLLSGIDLSCNKLIG---DIPPQIGNLTRIQTLNLSHNNLTGTIL-STFTNLRHIE 594 (740)
Q Consensus 521 n~l~~~~--~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~ 594 (740)
|++.+.. +..+. ...+++|++|++++|++++ .....+..+++|++|+|++|++++..| ..+..+++|+
T Consensus 183 N~l~~~~~~~~~~~------~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 256 (312)
T 1wwl_A 183 NPELGERGLISALC------PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256 (312)
T ss_dssp CTTCHHHHHHHHSC------TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCC
T ss_pred CCcCcchHHHHHHH------hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCC
Confidence 8765431 11110 0125688888888888873 222345678999999999999998774 5677889999
Q ss_pred EEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCCC
Q 038858 595 SLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLC 653 (740)
Q Consensus 595 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C 653 (740)
+|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|+.+++++||+..
T Consensus 257 ~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 257 SLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred EEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 9999999999 7777665 8999999999999987 66 7889999999999999863
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=4.4e-24 Score=215.79 Aligned_cols=208 Identities=25% Similarity=0.238 Sum_probs=139.7
Q ss_pred cccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCc
Q 038858 398 LSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNG 477 (740)
Q Consensus 398 ~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~ 477 (740)
+..++++++++++++.++ .+|..+. +.++.|++++|.+++..+..|..+++|+.|++++|.+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l--------------- 67 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--------------- 67 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC---------------
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc---------------
Confidence 445556666666666665 3333332 4555555555555544445555555555555555544
Q ss_pred cCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccc
Q 038858 478 SIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIG 557 (740)
Q Consensus 478 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 557 (740)
++..+. ..+++|++|++++|.+. .+|..+.. +++|+.|++++|++++
T Consensus 68 ----------------------~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~--------l~~L~~L~l~~N~l~~ 114 (290)
T 1p9a_G 68 ----------------------TKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQT--------LPALTVLDVSFNRLTS 114 (290)
T ss_dssp ----------------------CEEECC--SCCTTCCEEECCSSCCS-SCCCCTTT--------CTTCCEEECCSSCCCC
T ss_pred ----------------------CcccCC--CCCCcCCEEECCCCcCC-cCchhhcc--------CCCCCEEECCCCcCcc
Confidence 422221 45556666666666665 23333333 4567777777777776
Q ss_pred cCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCcc
Q 038858 558 DIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQ 637 (740)
Q Consensus 558 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 637 (740)
..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++|++++|+++. +|..+..
T Consensus 115 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~ 193 (290)
T 1p9a_G 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFG 193 (290)
T ss_dssp CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTT
T ss_pred cCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-cChhhcc
Confidence 666778888888888888888887777778888888888888888886666667788888888888888884 4544566
Q ss_pred ccCCCccccCCCCCCCCCCC
Q 038858 638 FATFNESNYKGNPFLCGLPL 657 (740)
Q Consensus 638 ~~~l~~~~~~~Np~~C~~~~ 657 (740)
...++.+++.+|||.|+|+.
T Consensus 194 ~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 194 SHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp TCCCSEEECCSCCBCCSGGG
T ss_pred cccCCeEEeCCCCccCcCcc
Confidence 77888999999999999864
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=6.4e-25 Score=238.83 Aligned_cols=235 Identities=21% Similarity=0.179 Sum_probs=173.3
Q ss_pred ccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeec
Q 038858 354 VNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIII 433 (740)
Q Consensus 354 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l 433 (740)
++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++.. ..++|+.|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEEC
Confidence 366677777776666666666667777777777777665544 666777777777777766332 2267777777
Q ss_pred cCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEccccccccccccccc-CCCc
Q 038858 434 PENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLC-GLNQ 512 (740)
Q Consensus 434 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~ 512 (740)
++|.+++..+. .+++|+.|++++|.+++ ..|..+..+++|+.|++++|.+++..|..+. .+++
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~-------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 170 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITM-------------LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCS-------------GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCC-------------CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc
Confidence 77777655443 34677888888777763 3344567778888888888888877776665 6788
Q ss_pred ccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCC
Q 038858 513 LQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRH 592 (740)
Q Consensus 513 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 592 (740)
|+.|++++|.+++..+... +++|+.|++++|.+++..| .+..+++|+.|+|++|.+++ +|..+..+++
T Consensus 171 L~~L~Ls~N~l~~~~~~~~----------l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~ 238 (487)
T 3oja_A 171 LEHLNLQYNFIYDVKGQVV----------FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQN 238 (487)
T ss_dssp CCEEECTTSCCCEEECCCC----------CTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTT
T ss_pred ccEEecCCCcccccccccc----------CCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCC
Confidence 8888888888876533221 5688999999999886544 58889999999999999995 6777889999
Q ss_pred CcEEECCCCcCC-ccCchhhhcCCCCCEEEcc
Q 038858 593 IESLDLYHNKLN-GKIPCQLVELNALVVFSVA 623 (740)
Q Consensus 593 L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~l~ 623 (740)
|+.|++++|++. +.+|..+..++.|+.++++
T Consensus 239 L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 999999999998 6677788888888888886
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=6e-23 Score=206.79 Aligned_cols=212 Identities=24% Similarity=0.245 Sum_probs=118.0
Q ss_pred cCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeecc
Q 038858 355 NLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIP 434 (740)
Q Consensus 355 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~ 434 (740)
+|++|++++|.+++..+..+..+++|++|++++|++.+..+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555555444445555555555555555554444455555555555555555554444455555555555555
Q ss_pred CCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCccc
Q 038858 435 ENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQ 514 (740)
Q Consensus 435 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 514 (740)
+|.+.+..+..+..+++|++|++++|.+.+. .+|..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 176 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSF------------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCC------------CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred CCCccccCchhcccCCCCCEEECcCCcccee------------cCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc
Confidence 5555544444455555555555555544310 1233444444444444444444433333333222222
Q ss_pred EEeCCCccccCCCCCcccccccchhhhccccc-eEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCC
Q 038858 515 LLDLSDNKLHGLIPPCFDNTALHERRVLSLLS-GIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHI 593 (740)
Q Consensus 515 ~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 593 (740)
.+. .|++++|.+.+..+..+.. .+|+.|++++|++++..+..|..+++|
T Consensus 177 -----------------------------~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L 226 (276)
T 2z62_A 177 -----------------------------LLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSL 226 (276)
T ss_dssp -----------------------------TCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSC
T ss_pred -----------------------------ccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccc
Confidence 122 5666666666554444443 478888888888887777778888889
Q ss_pred cEEECCCCcCCccCc
Q 038858 594 ESLDLYHNKLNGKIP 608 (740)
Q Consensus 594 ~~L~Ls~N~l~~~~~ 608 (740)
+.|++++|++.+..|
T Consensus 227 ~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 227 QKIWLHTNPWDCSCP 241 (276)
T ss_dssp CEEECCSSCBCCCTT
T ss_pred cEEEccCCcccccCC
Confidence 999999998885543
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.6e-22 Score=202.68 Aligned_cols=204 Identities=24% Similarity=0.302 Sum_probs=138.8
Q ss_pred CCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEec
Q 038858 378 TKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGI 457 (740)
Q Consensus 378 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 457 (740)
...+.++++++.++. +|..+. +++++|++++|.+++..+..+..+++|++|++++|.++...+..|..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 457899999999885 454443 68999999999999777778999999999999999999777777888999999999
Q ss_pred cCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccc
Q 038858 458 SDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALH 537 (740)
Q Consensus 458 ~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 537 (740)
++|++.+ ..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+.
T Consensus 93 ~~n~l~~-------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------- 151 (270)
T 2o6q_A 93 TDNKLQA-------------LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG-------- 151 (270)
T ss_dssp CSSCCCC-------------CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--------
T ss_pred CCCcCCc-------------CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh--------
Confidence 9888762 2233456667777777777777666666666666666666666666544333
Q ss_pred hhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCC
Q 038858 538 ERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNAL 617 (740)
Q Consensus 538 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 617 (740)
.|..+++|++|+|++|.+++..+..|..+++|++|++++|++++..+..+..+++|
T Consensus 152 ------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (270)
T 2o6q_A 152 ------------------------VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207 (270)
T ss_dssp ------------------------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred ------------------------HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence 34445555555555555554444445555555555555555554444445555555
Q ss_pred CEEEccCCcccc
Q 038858 618 VVFSVAYNNLSG 629 (740)
Q Consensus 618 ~~L~l~~N~l~~ 629 (740)
+.|++++|++..
T Consensus 208 ~~L~l~~N~~~c 219 (270)
T 2o6q_A 208 KMLQLQENPWDC 219 (270)
T ss_dssp CEEECCSSCBCC
T ss_pred CEEEecCCCeeC
Confidence 555555555543
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.6e-22 Score=204.26 Aligned_cols=203 Identities=24% Similarity=0.161 Sum_probs=147.2
Q ss_pred CCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCcc
Q 038858 374 NFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQ 453 (740)
Q Consensus 374 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 453 (740)
+..++++++++++++.+... |..+. +.+++|++++|.+++..+..+..+++|+.|++++|.+++..+ ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~i-p~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTAL-PPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSC-CSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCcC-CCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 45788999999999999755 43343 689999999999998878889999999999999999986543 26788899
Q ss_pred EEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccc
Q 038858 454 ILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDN 533 (740)
Q Consensus 454 ~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 533 (740)
+|++++|++. .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..
T Consensus 81 ~L~Ls~N~l~--------------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 146 (290)
T 1p9a_G 81 TLDLSHNQLQ--------------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146 (290)
T ss_dssp EEECCSSCCS--------------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred EEECCCCcCC--------------cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhccc
Confidence 9999998886 45556677778888888888887666677777777777777777777655555544
Q ss_pred cccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCC
Q 038858 534 TALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLN 604 (740)
Q Consensus 534 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 604 (740)
+++|+.|++++|++++..+..|..+++|+.|+|++|+++ .+|..+...++|+.|+|++|++.
T Consensus 147 --------l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 147 --------TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp --------CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred --------ccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 446666666666666544445555666666666666665 34444445556666666666554
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=6.1e-23 Score=205.91 Aligned_cols=164 Identities=27% Similarity=0.300 Sum_probs=80.4
Q ss_pred hhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcC
Q 038858 483 IDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQ 562 (740)
Q Consensus 483 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 562 (740)
+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+.. +++|++|++++|.+++..+..
T Consensus 59 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~~~~~~ 128 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDK--------LTNLKELVLVENQLQSLPDGV 128 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTT--------CTTCCEEECTTSCCCCCCTTT
T ss_pred cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcC--------CcCCCEEECCCCcCCccCHHH
Confidence 33444444444444444421 23444444455555544444444433333 334555555555554444444
Q ss_pred ccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCC
Q 038858 563 IGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFN 642 (740)
Q Consensus 563 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~ 642 (740)
|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..+++|+
T Consensus 129 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (272)
T 3rfs_A 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred hccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence 45555555555555555544444455555555555555555544444445555555555555555555444445555555
Q ss_pred ccccCCCCCCCCCC
Q 038858 643 ESNYKGNPFLCGLP 656 (740)
Q Consensus 643 ~~~~~~Np~~C~~~ 656 (740)
.+++++|||.|+|+
T Consensus 209 ~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 209 YIWLHDNPWDCTCP 222 (272)
T ss_dssp EEECCSSCBCCCTT
T ss_pred EEEccCCCccccCc
Confidence 55555555555554
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=2.5e-22 Score=198.93 Aligned_cols=159 Identities=25% Similarity=0.311 Sum_probs=83.4
Q ss_pred cCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCC
Q 038858 488 RLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLT 567 (740)
Q Consensus 488 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 567 (740)
+++.|++++|.+++..+..+..+++|++|++++|.+.+..+..|.. +++|+.|++++|.+++..+..|..++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~~l~ 107 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD--------LTELGTLGLANNQLASLPLGVFDHLT 107 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT--------CTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhcc--------CCcCCEEECCCCcccccChhHhcccC
Confidence 4445555555554444444555555555555555555444444433 34555555555555544444455555
Q ss_pred cCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccC
Q 038858 568 RIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYK 647 (740)
Q Consensus 568 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~ 647 (740)
+|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+..+..+++|+.++++
T Consensus 108 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF 187 (251)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 55555555555555444445555555555555555554444445555555555555555555555445555555555555
Q ss_pred CCCCCCC
Q 038858 648 GNPFLCG 654 (740)
Q Consensus 648 ~Np~~C~ 654 (740)
+|||.|+
T Consensus 188 ~N~~~c~ 194 (251)
T 3m19_A 188 GNQFDCS 194 (251)
T ss_dssp SCCBCTT
T ss_pred CCceeCC
Confidence 5555555
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=7.5e-23 Score=205.25 Aligned_cols=209 Identities=24% Similarity=0.302 Sum_probs=156.2
Q ss_pred cccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCc
Q 038858 398 LSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNG 477 (740)
Q Consensus 398 ~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~ 477 (740)
...+++|+.|++++|.+.. . ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~------------- 99 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQS------------- 99 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCC-------------
T ss_pred cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCc-------------
Confidence 3455666666666666642 2 2355666677777777766643 356667777777777776652
Q ss_pred cCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccc
Q 038858 478 SIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIG 557 (740)
Q Consensus 478 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 557 (740)
..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.. +++|+.|++++|++++
T Consensus 100 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~ 171 (272)
T 3rfs_A 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK--------LTNLTELDLSYNQLQS 171 (272)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------CTTCCEEECCSSCCCC
T ss_pred cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc--------CccCCEEECCCCCcCc
Confidence 23344566777777777777777666667778888888888888887776666655 5688888888888887
Q ss_pred cCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCcc
Q 038858 558 DIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQ 637 (740)
Q Consensus 558 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 637 (740)
..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++.+. ++.|+.++++.|.++|.+|..++.
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccc
Confidence 7777788899999999999999988888899999999999999998744 456888999999999999886554
Q ss_pred c
Q 038858 638 F 638 (740)
Q Consensus 638 ~ 638 (740)
+
T Consensus 245 ~ 245 (272)
T 3rfs_A 245 V 245 (272)
T ss_dssp B
T ss_pred c
Confidence 4
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=3.6e-23 Score=216.94 Aligned_cols=267 Identities=18% Similarity=0.160 Sum_probs=125.6
Q ss_pred EEccCCcCcccCCccccCCCCCcEEEeecccCCCccCh----hhhhcCc-cCcEEEcCCccccccCCcCCCCC-----CC
Q 038858 310 FNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPE----HLAIGCV-NLEILVLSNNNLEGHMFSKNFNL-----TK 379 (740)
Q Consensus 310 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~ 379 (740)
++++.|.+++.+|..+...++|++|++++|.++ ..+. ..+..++ +|++|++++|.+.+..+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 455666666555554444555666666666665 3332 2223344 45555555555544333333221 44
Q ss_pred CCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCc-cCcceeeccCCcccCCCCccc----cC-CCCcc
Q 038858 380 LSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNL-TGLQYIIIPENHLEGPIPVAF----CQ-LDSLQ 453 (740)
Q Consensus 380 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~----~~-~~~L~ 453 (740)
|++|++++|++.+..+..+... +..+ ++|++|++++|.+++..+..+ .. .++|+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~--------------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 141 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKT--------------------LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHH--------------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCC
T ss_pred ccEEECcCCcCChHHHHHHHHH--------------------HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCcee
Confidence 4444444444443332211111 1112 344444444444443333222 22 23555
Q ss_pred EEeccCCcCCCCCCCCCCCCcCCccCchhhhccc-cCcEEEccccccccccccc----ccCC-CcccEEeCCCccccCCC
Q 038858 454 ILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLL-RLSHLILAHNNLEGEVPVQ----LCGL-NQLQLLDLSDNKLHGLI 527 (740)
Q Consensus 454 ~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~----l~~l-~~L~~L~L~~n~l~~~~ 527 (740)
+|++++|.+++..+ ..++..+..++ +|++|++++|.+++..+.. +..+ ++|++|++++|.+.+..
T Consensus 142 ~L~Ls~N~l~~~~~---------~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~ 212 (362)
T 3goz_A 142 SLNLRGNDLGIKSS---------DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS 212 (362)
T ss_dssp EEECTTSCGGGSCH---------HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred EEEccCCcCCHHHH---------HHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH
Confidence 55555555442110 02223333333 5666666666555444332 2233 36666666666655422
Q ss_pred CCcccccccchhhh-ccccceEEccCccccccCC----cCccCCCcCcEEeCcCCcCCCcc-------chhccCcCCCcE
Q 038858 528 PPCFDNTALHERRV-LSLLSGIDLSCNKLIGDIP----PQIGNLTRIQTLNLSHNNLTGTI-------LSTFTNLRHIES 595 (740)
Q Consensus 528 ~~~~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~-------~~~~~~l~~L~~ 595 (740)
...+.. .+.. .++|+.|++++|.+.+..+ ..+..+++|++|+|++|.+.+.. +..+..+++|+.
T Consensus 213 ~~~l~~----~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~ 288 (362)
T 3goz_A 213 YAELAY----IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIIL 288 (362)
T ss_dssp HHHHHH----HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEE
T ss_pred HHHHHH----HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEE
Confidence 211111 0111 1356666666666554322 23455666777777777644322 234566677777
Q ss_pred EECCCCcCCccCchh
Q 038858 596 LDLYHNKLNGKIPCQ 610 (740)
Q Consensus 596 L~Ls~N~l~~~~~~~ 610 (740)
||+++|++....+..
T Consensus 289 LdL~~N~l~~~~~~~ 303 (362)
T 3goz_A 289 VDKNGKEIHPSHSIP 303 (362)
T ss_dssp ECTTSCBCCGGGCHH
T ss_pred EecCCCcCCCcchHH
Confidence 777777776554433
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=1.8e-21 Score=198.69 Aligned_cols=194 Identities=20% Similarity=0.341 Sum_probs=114.2
Q ss_pred cCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccC
Q 038858 400 KCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSI 479 (740)
Q Consensus 400 ~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~ 479 (740)
.+++|++|++++|.+.. ++ .+..+++|+.|++++|.+++..+ +..+++|++|++++|++. .+
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~--------------~~ 100 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK--------------NV 100 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS--------------CC
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC--------------Cc
Confidence 34445555555554442 22 34445555555555555543322 555555555555555554 11
Q ss_pred chhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccC
Q 038858 480 PDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDI 559 (740)
Q Consensus 480 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 559 (740)
+ .+..+++|++|++++|.+++.. .+..+++|++|++++|.+++..+ +.. +++|+.|++++|.+++..
T Consensus 101 ~-~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~--------l~~L~~L~l~~n~l~~~~ 167 (308)
T 1h6u_A 101 S-AIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAG--------LTNLQYLSIGNAQVSDLT 167 (308)
T ss_dssp G-GGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGG--------CTTCCEEECCSSCCCCCG
T ss_pred h-hhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccC--------CCCccEEEccCCcCCCCh
Confidence 1 3455556666666666655332 25566666666666666654332 222 456777777777666432
Q ss_pred CcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCccccc
Q 038858 560 PPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGK 630 (740)
Q Consensus 560 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 630 (740)
+ +..+++|+.|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|++++.
T Consensus 168 ~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 168 P--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp G--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred h--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence 2 6777778888888877776443 7777788888888888775443 67777888888888877653
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=8e-21 Score=188.04 Aligned_cols=140 Identities=26% Similarity=0.317 Sum_probs=86.3
Q ss_pred hhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcC
Q 038858 483 IDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQ 562 (740)
Q Consensus 483 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 562 (740)
|.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|.. +++|+.|++++|.+++..+..
T Consensus 55 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------l~~L~~L~L~~N~l~~~~~~~ 126 (251)
T 3m19_A 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDH--------LTQLDKLYLGGNQLKSLPSGV 126 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT--------CTTCCEEECCSSCCCCCCTTT
T ss_pred hcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcc--------cCCCCEEEcCCCcCCCcChhH
Confidence 334444444444444444444444555555555555555555444444443 345666666666666555555
Q ss_pred ccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCccccc
Q 038858 563 IGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGK 630 (740)
Q Consensus 563 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 630 (740)
|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|++|++++|++++.
T Consensus 127 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 127 FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred hccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 66677777777777777766666677777777777777777766666677777777777777777654
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=2.7e-21 Score=190.05 Aligned_cols=79 Identities=16% Similarity=0.160 Sum_probs=42.8
Q ss_pred cccc-eEEccCccccccCCcCccCCCcCcEEeCcCCc-CCCccchhccCc-CCCcEEECCCCcCCccCchhhhcCCCCCE
Q 038858 543 SLLS-GIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNN-LTGTILSTFTNL-RHIESLDLYHNKLNGKIPCQLVELNALVV 619 (740)
Q Consensus 543 ~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 619 (740)
++|+ .|++++|+++...+..|.. ++|+.|++++|+ +++..+..|..+ ++|++|++++|++++. |.. .+++|+.
T Consensus 155 ~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~ 230 (239)
T 2xwt_C 155 CNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKE 230 (239)
T ss_dssp BSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSE
T ss_pred hcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCce
Confidence 3444 4444444444332333333 566666666663 665555566666 6666666666666633 322 4556666
Q ss_pred EEccCC
Q 038858 620 FSVAYN 625 (740)
Q Consensus 620 L~l~~N 625 (740)
|+++++
T Consensus 231 L~l~~~ 236 (239)
T 2xwt_C 231 LIARNT 236 (239)
T ss_dssp EECTTC
T ss_pred eeccCc
Confidence 666654
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=2e-21 Score=191.00 Aligned_cols=197 Identities=17% Similarity=0.163 Sum_probs=151.4
Q ss_pred CcceeeccCCcccCCCCccccCCCCccEEeccCCc-CCCCCCCCCCCCcCCccCchhhhccccCcEEEccc-cccccccc
Q 038858 427 GLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNN-ISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAH-NNLEGEVP 504 (740)
Q Consensus 427 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~ 504 (740)
++++|++++|++++..+..|..+++|++|++++|+ +++ ..+..|.++++|++|++++ |.+++..+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~-------------i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ-------------LESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCE-------------ECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcce-------------eCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 67777777777776666667777777777777775 541 2233566777778888877 77776666
Q ss_pred ccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccc---eEEccCc-cccccCCcCccCCCcCc-EEeCcCCcC
Q 038858 505 VQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLS---GIDLSCN-KLIGDIPPQIGNLTRIQ-TLNLSHNNL 579 (740)
Q Consensus 505 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~L~~n~l 579 (740)
..|.++++|++|++++|.+++ .|. +.. +++|+ .|++++| .+.+..+..|..+++|+ +|++++|++
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~-lp~-~~~--------l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKM-FPD-LTK--------VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCS-CCC-CTT--------CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred HHhCCCCCCCEEeCCCCCCcc-ccc-ccc--------ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence 778888888888888888876 333 443 44565 9999999 88877777899999999 999999999
Q ss_pred CCccchhccCcCCCcEEECCCCc-CCccCchhhhcC-CCCCEEEccCCcccccCCCCCccccCCCccccCCCC
Q 038858 580 TGTILSTFTNLRHIESLDLYHNK-LNGKIPCQLVEL-NALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNP 650 (740)
Q Consensus 580 ~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np 650 (740)
+...+..|.. ++|++|++++|+ +++..+..|..+ ++|+.|++++|++++..+. .++.++.+.+.+++
T Consensus 169 ~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 169 TSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp CEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred cccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 9665666766 899999999995 987777889999 9999999999999976554 56777888777664
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=4.5e-23 Score=216.15 Aligned_cols=258 Identities=16% Similarity=0.149 Sum_probs=166.3
Q ss_pred EcCCccccccCCcCCCCCCCCCeEEccCCcccccCc----cccccCC-CCCeEEccCCcCcccCCCCCCCc-----cCcc
Q 038858 360 VLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIP----QSLSKCL-SLEGLHLNNNNLSGKIPQWLGNL-----TGLQ 429 (740)
Q Consensus 360 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~l~-~L~~L~l~~n~i~~~~~~~l~~l-----~~L~ 429 (740)
.++.|.+++..+..+...++|++|++++|.+....+ ..+..++ +|++|++++|.+++..+..+..+ ++|+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 344444444443333334445566666665554444 4555666 67777777776665444444443 7777
Q ss_pred eeeccCCcccCCCCccc----cCC-CCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhc-cccCcEEEcccccccccc
Q 038858 430 YIIIPENHLEGPIPVAF----CQL-DSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDG-LLRLSHLILAHNNLEGEV 503 (740)
Q Consensus 430 ~L~l~~n~~~~~~~~~~----~~~-~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~ 503 (740)
+|++++|.+++..+..+ ..+ ++|++|++++|++++..+. .+...+.. .++|++|++++|.+++..
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~---------~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 154 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSS---------EFKQAFSNLPASITSLNLRGNDLGIKS 154 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH---------HHHHHHTTSCTTCCEEECTTSCGGGSC
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHH---------HHHHHHHhCCCceeEEEccCCcCCHHH
Confidence 78888887776655533 344 7899999999988632111 11122333 368999999999988544
Q ss_pred c----ccccCCC-cccEEeCCCccccCCCCCcccccccchhhhc-cccceEEccCcccccc----CCcCccC-CCcCcEE
Q 038858 504 P----VQLCGLN-QLQLLDLSDNKLHGLIPPCFDNTALHERRVL-SLLSGIDLSCNKLIGD----IPPQIGN-LTRIQTL 572 (740)
Q Consensus 504 ~----~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~----~~~~~~~-l~~L~~L 572 (740)
. ..+...+ +|++|++++|++++..+..+.. .+... ++|+.|++++|.+.+. ++..+.. .++|++|
T Consensus 155 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~----~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L 230 (362)
T 3goz_A 155 SDELIQILAAIPANVNSLNLRGNNLASKNCAELAK----FLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSL 230 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH----HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEE
T ss_pred HHHHHHHHhcCCccccEeeecCCCCchhhHHHHHH----HHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEE
Confidence 3 3345555 8999999999988766544432 12223 4899999999998853 3334444 3589999
Q ss_pred eCcCCcCCCccc----hhccCcCCCcEEECCCCcCCccCc-------hhhhcCCCCCEEEccCCccccc
Q 038858 573 NLSHNNLTGTIL----STFTNLRHIESLDLYHNKLNGKIP-------CQLVELNALVVFSVAYNNLSGK 630 (740)
Q Consensus 573 ~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~-------~~~~~l~~L~~L~l~~N~l~~~ 630 (740)
+|++|.+++..+ ..+..+++|++|++++|.+.+..+ ..+..+++|+.||+++|++...
T Consensus 231 ~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 231 NLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp ECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred ECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 999998887554 345677889999999998553333 3456677888899999988765
No 88
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.86 E-value=1.9e-21 Score=187.86 Aligned_cols=175 Identities=23% Similarity=0.299 Sum_probs=136.0
Q ss_pred cEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcC
Q 038858 490 SHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRI 569 (740)
Q Consensus 490 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 569 (740)
+.++++++.++ .+|..+. ++++.|++++|.+.+..+..|.. +++|+.|++++|.+++..|..|..+++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~--------l~~L~~L~Ls~N~i~~~~~~~~~~l~~L 82 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSP--------YKKLRRIDLSNNQISELAPDAFQGLRSL 82 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTT--------CTTCCEEECCSSCCCEECTTTTTTCSSC
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhC--------CCCCCEEECCCCcCCCcCHHHhhCCcCC
Confidence 45666666665 3333332 56777777777777666666655 5678888888888887778888888899
Q ss_pred cEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCC
Q 038858 570 QTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGN 649 (740)
Q Consensus 570 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~N 649 (740)
++|+|++|+++...+..|.++++|++|+|++|++++..|..|..+++|++|++++|++++..+..+..+++++.+++++|
T Consensus 83 ~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 83 NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 99999999998777777888999999999999998888888888999999999999999888888888889999999999
Q ss_pred CCCCCCCCC----------------CCCCCCcccccCCCCCC
Q 038858 650 PFLCGLPLP----------------ICRSPVTMLEASTSNEG 675 (740)
Q Consensus 650 p~~C~~~~~----------------~c~~~~~~~~~~~~~~~ 675 (740)
||.|+|++. .|..|....+.......
T Consensus 163 ~~~c~c~l~~l~~~l~~~~~~~~~~~C~~P~~l~g~~l~~l~ 204 (220)
T 2v9t_B 163 PFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIK 204 (220)
T ss_dssp CEECSGGGHHHHHHHHHCCCBCSCCBEEESGGGTTCBGGGSC
T ss_pred CcCCCCccHHHHHHHHhCCCCccCCCcCCchHHcCCchhhCC
Confidence 999999641 47777666665544443
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=1e-22 Score=211.80 Aligned_cols=255 Identities=18% Similarity=0.202 Sum_probs=138.4
Q ss_pred CCcEEEeecccCCCccChhhhhcC--ccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCccccc-CccccccCCCCCe
Q 038858 330 FLQILDLSNNHLTGEIPEHLAIGC--VNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEE-IPQSLSKCLSLEG 406 (740)
Q Consensus 330 ~L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~ 406 (740)
.++.++++++.+.. ..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+... .+..+..+++|++
T Consensus 48 ~~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCCH----HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 46677777776551 222233 5677777777766654433 33456666666666655433 4444555555555
Q ss_pred EEccCCcCcccCCCCCCCccCcceeeccCC-cccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhc
Q 038858 407 LHLNNNNLSGKIPQWLGNLTGLQYIIIPEN-HLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDG 485 (740)
Q Consensus 407 L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~ 485 (740)
|++++|.+++..+..+..+++|++|++++| .+++. .++..+..
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~------------------------------------~l~~~~~~ 166 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF------------------------------------ALQTLLSS 166 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH------------------------------------HHHHHHHH
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH------------------------------------HHHHHHhc
Confidence 555555554433334444444444444444 23321 12333444
Q ss_pred cccCcEEEcccc-ccccc-ccccccCCC-cccEEeCCCcc--cc-CCCCCcccccccchhhhccccceEEccCcc-cccc
Q 038858 486 LLRLSHLILAHN-NLEGE-VPVQLCGLN-QLQLLDLSDNK--LH-GLIPPCFDNTALHERRVLSLLSGIDLSCNK-LIGD 558 (740)
Q Consensus 486 l~~L~~L~L~~n-~l~~~-~~~~l~~l~-~L~~L~L~~n~--l~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~ 558 (740)
+++|++|++++| .+++. .+..+..++ +|++|++++|. ++ +..+.. ...+++|+.|++++|. +++.
T Consensus 167 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~--------~~~~~~L~~L~l~~~~~l~~~ 238 (336)
T 2ast_B 167 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL--------VRRCPNLVHLDLSDSVMLKND 238 (336)
T ss_dssp CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH--------HHHCTTCSEEECTTCTTCCGG
T ss_pred CCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH--------HhhCCCCCEEeCCCCCcCCHH
Confidence 555555555555 44432 233444555 55555555552 22 111111 1224556666666666 4445
Q ss_pred CCcCccCCCcCcEEeCcCCc-CCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCc
Q 038858 559 IPPQIGNLTRIQTLNLSHNN-LTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTT 636 (740)
Q Consensus 559 ~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 636 (740)
.+..+..+++|++|++++|. +.......+.++++|++|++++| ++...-..+. ..++.|++++|++++..|..++
T Consensus 239 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 239 CFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp GGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCS
T ss_pred HHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCccc
Confidence 55567777888888888884 44333346778888888888888 4432222222 2355566888888888777543
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=5.5e-23 Score=217.90 Aligned_cols=193 Identities=16% Similarity=0.237 Sum_probs=122.9
Q ss_pred CCccCcceeeccCCcccC----CCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhcc---------ccC
Q 038858 423 GNLTGLQYIIIPENHLEG----PIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGL---------LRL 489 (740)
Q Consensus 423 ~~l~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l---------~~L 489 (740)
..+++|++|++++|.+.+ .++..+..+++|++|++++|.+++..+. .++..+..+ ++|
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~---------~l~~~l~~l~~~~~~~~~~~L 161 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA---------KIARALQELAVNKKAKNAPPL 161 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH---------HHHHHHHHHHHHHHHHTCCCC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH---------HHHHHHHHHhhhhhcccCCCC
Confidence 344555555555555554 2334455566666666666655311100 122223333 667
Q ss_pred cEEEccccccc-cccc---ccccCCCcccEEeCCCccccC-----CCCCcccccccchhhhccccceEEccCcccc----
Q 038858 490 SHLILAHNNLE-GEVP---VQLCGLNQLQLLDLSDNKLHG-----LIPPCFDNTALHERRVLSLLSGIDLSCNKLI---- 556 (740)
Q Consensus 490 ~~L~L~~n~l~-~~~~---~~l~~l~~L~~L~L~~n~l~~-----~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~---- 556 (740)
++|++++|.++ ...+ ..+..+++|++|++++|.+.. ..+..+. .+++|+.|++++|.++
T Consensus 162 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~--------~~~~L~~L~Ls~n~l~~~g~ 233 (386)
T 2ca6_A 162 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA--------YCQELKVLDLQDNTFTHLGS 233 (386)
T ss_dssp CEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG--------GCTTCCEEECCSSCCHHHHH
T ss_pred cEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh--------cCCCccEEECcCCCCCcHHH
Confidence 77777777665 2223 345566677777777776652 1111222 2567777777777774
Q ss_pred ccCCcCccCCCcCcEEeCcCCcCCCc----cchhccC--cCCCcEEECCCCcCCc----cCchhh-hcCCCCCEEEccCC
Q 038858 557 GDIPPQIGNLTRIQTLNLSHNNLTGT----ILSTFTN--LRHIESLDLYHNKLNG----KIPCQL-VELNALVVFSVAYN 625 (740)
Q Consensus 557 ~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~--l~~L~~L~Ls~N~l~~----~~~~~~-~~l~~L~~L~l~~N 625 (740)
..+|..+..+++|++|+|++|.+++. ++..+.. +++|++|+|++|++++ .+|..+ ..+++|++|++++|
T Consensus 234 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 234 SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp HHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred HHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 45666778888999999999998865 4566643 8899999999999987 477776 56899999999999
Q ss_pred cccccCC
Q 038858 626 NLSGKIP 632 (740)
Q Consensus 626 ~l~~~~~ 632 (740)
++++..+
T Consensus 314 ~l~~~~~ 320 (386)
T 2ca6_A 314 RFSEEDD 320 (386)
T ss_dssp BSCTTSH
T ss_pred cCCcchh
Confidence 9987653
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=7.9e-21 Score=194.56 Aligned_cols=203 Identities=18% Similarity=0.172 Sum_probs=105.6
Q ss_pred ccCcEEEcCCccccccCCcCC--CCCCCCCeEEccCCcccccCc----cccccCCCCCeEEccCCcCcccCCCCCCCccC
Q 038858 354 VNLEILVLSNNNLEGHMFSKN--FNLTKLSWLLLEDNHFVEEIP----QSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTG 427 (740)
Q Consensus 354 ~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~ 427 (740)
++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 445555555555555444444 455666666666666554322 22334566666666666665555555666666
Q ss_pred cceeeccCCcccCC---C-CccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCch----hhhccccCcEEEcccccc
Q 038858 428 LQYIIIPENHLEGP---I-PVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPD----RIDGLLRLSHLILAHNNL 499 (740)
Q Consensus 428 L~~L~l~~n~~~~~---~-~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l 499 (740)
|++|++++|++.+. . +..+..+++|++|++++|+++ .++. .+..+++|++|++++|.+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--------------~l~~~~~~l~~~l~~L~~L~Ls~N~l 236 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME--------------TPTGVCAALAAAGVQPHSLDLSHNSL 236 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC--------------CHHHHHHHHHHHTCCCSSEECTTSCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC--------------chHHHHHHHHhcCCCCCEEECCCCCC
Confidence 66666666654321 1 112244555666666555553 1111 123444444455544444
Q ss_pred cccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcC
Q 038858 500 EGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNL 579 (740)
Q Consensus 500 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 579 (740)
++..|..+..+. .+++|+.|++++|+++ .+|..+. ++|++|+|++|++
T Consensus 237 ~~~~p~~~~~~~-----------------------------~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l 284 (310)
T 4glp_A 237 RATVNPSAPRCM-----------------------------WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRL 284 (310)
T ss_dssp CCCCCSCCSSCC-----------------------------CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCC
T ss_pred CccchhhHHhcc-----------------------------CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcC
Confidence 443333333321 0135555555555555 3344432 5667777777766
Q ss_pred CCccchhccCcCCCcEEECCCCcCC
Q 038858 580 TGTILSTFTNLRHIESLDLYHNKLN 604 (740)
Q Consensus 580 ~~~~~~~~~~l~~L~~L~Ls~N~l~ 604 (740)
++. | .+..+++|+.|++++|+++
T Consensus 285 ~~~-~-~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 285 NRA-P-QPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CSC-C-CTTSCCCCSCEECSSTTTS
T ss_pred CCC-c-hhhhCCCccEEECcCCCCC
Confidence 653 2 2556677777777777665
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=1.6e-22 Score=214.31 Aligned_cols=248 Identities=16% Similarity=0.191 Sum_probs=184.0
Q ss_pred ccccccCCCCCeEEccCCcCccc----CCCCCCCccCcceeeccCCcc---cCCCCcc-------ccCCCCccEEeccCC
Q 038858 395 PQSLSKCLSLEGLHLNNNNLSGK----IPQWLGNLTGLQYIIIPENHL---EGPIPVA-------FCQLDSLQILGISDN 460 (740)
Q Consensus 395 ~~~~~~l~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~l~~n~~---~~~~~~~-------~~~~~~L~~L~l~~n 460 (740)
+..+..+++|++|++++|.+.+. ++..+..+++|++|++++|.+ .+..|.. +..+++|++|++++|
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 34455666677777777766543 223455667777777777533 2333433 478899999999999
Q ss_pred cCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccc----cCC---------CcccEEeCCCccccCCC
Q 038858 461 NISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQL----CGL---------NQLQLLDLSDNKLHGLI 527 (740)
Q Consensus 461 ~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l----~~l---------~~L~~L~L~~n~l~~~~ 527 (740)
.+.+.-. ..+|..+..+++|++|++++|.++...+..+ ..+ ++|++|++++|+++...
T Consensus 105 ~l~~~~~---------~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~ 175 (386)
T 2ca6_A 105 AFGPTAQ---------EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175 (386)
T ss_dssp CCCTTTH---------HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred cCCHHHH---------HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence 9873110 0366788999999999999999975444433 333 89999999999987322
Q ss_pred CCcccccccchhhhccccceEEccCccccc-----cCCcCccCCCcCcEEeCcCCcCC----CccchhccCcCCCcEEEC
Q 038858 528 PPCFDNTALHERRVLSLLSGIDLSCNKLIG-----DIPPQIGNLTRIQTLNLSHNNLT----GTILSTFTNLRHIESLDL 598 (740)
Q Consensus 528 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L 598 (740)
...+. ..+..+++|+.|++++|.+.. ..+..+..+++|+.|+|++|.++ ..++..+..+++|++|+|
T Consensus 176 ~~~l~----~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L 251 (386)
T 2ca6_A 176 MKEWA----KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251 (386)
T ss_dssp HHHHH----HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred HHHHH----HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence 11110 123446799999999999973 34447889999999999999996 567888999999999999
Q ss_pred CCCcCCcc----Cchhhhc--CCCCCEEEccCCcccc----cCCCCC-ccccCCCccccCCCCCCCCC
Q 038858 599 YHNKLNGK----IPCQLVE--LNALVVFSVAYNNLSG----KIPEMT-TQFATFNESNYKGNPFLCGL 655 (740)
Q Consensus 599 s~N~l~~~----~~~~~~~--l~~L~~L~l~~N~l~~----~~~~~~-~~~~~l~~~~~~~Np~~C~~ 655 (740)
++|++++. ++..+.. +++|++|++++|++++ .+|..+ ..+++|+.+++++|++.+..
T Consensus 252 ~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 99999866 5666644 8999999999999998 366555 55799999999999998766
No 93
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=6.9e-21 Score=183.89 Aligned_cols=157 Identities=20% Similarity=0.279 Sum_probs=124.7
Q ss_pred cEEEcccccccccccccccCCCcccEEeCCCccccCCCC-CcccccccchhhhccccceEEccCccccccCCcCccCCCc
Q 038858 490 SHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIP-PCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTR 568 (740)
Q Consensus 490 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 568 (740)
+.+++++|.++. +|..+. +.++.|++++|.+++..+ ..|.. +++|+.|++++|.+++..+..|..+++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~--------l~~L~~L~L~~N~i~~i~~~~~~~l~~ 82 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKK--------LPQLRKINFSNNKITDIEEGAFEGASG 82 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGG--------CTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhcc--------CCCCCEEECCCCcCCEECHHHhCCCCC
Confidence 466777776663 343332 345777777777776644 23444 567888888888888777778888889
Q ss_pred CcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCC
Q 038858 569 IQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKG 648 (740)
Q Consensus 569 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~ 648 (740)
|++|+|++|.+++..+..|..+++|++|+|++|++++..|..|..+++|++|++++|++++..|..+..+++|+.+++++
T Consensus 83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence 99999999999888888888899999999999999888888888889999999999999988888888888999999999
Q ss_pred CCCCCCCCC
Q 038858 649 NPFLCGLPL 657 (740)
Q Consensus 649 Np~~C~~~~ 657 (740)
|||.|+|++
T Consensus 163 N~l~c~c~l 171 (220)
T 2v70_A 163 NPFNCNCYL 171 (220)
T ss_dssp CCEECSGGG
T ss_pred cCCcCCCch
Confidence 999999873
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=5.7e-22 Score=206.10 Aligned_cols=256 Identities=18% Similarity=0.232 Sum_probs=182.5
Q ss_pred CCCcEEEccCCcCcccCCccccCC--CCCcEEEeecccCCCccChhhhhcCccCcEEEcCCcccccc-CCcCCCCCCCCC
Q 038858 305 PSLSSFNISMNALDGSIPSSFGNM--NFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGH-MFSKNFNLTKLS 381 (740)
Q Consensus 305 ~~L~~L~l~~n~~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~ 381 (740)
..++.++++++.+. +..+..+ +.++.|++++|.+.+..+. .+ .+++|++|++++|.+.+. .+..+..+++|+
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~-~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HF-SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CC-CCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hc-cCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 35899999999876 4456666 8999999999999865554 33 689999999999998765 555677899999
Q ss_pred eEEccCCcccccCccccccCCCCCeEEccCC-cCccc-CCCCCCCccCcceeeccCC-cccCC-CCccccCCC-CccEEe
Q 038858 382 WLLLEDNHFVEEIPQSLSKCLSLEGLHLNNN-NLSGK-IPQWLGNLTGLQYIIIPEN-HLEGP-IPVAFCQLD-SLQILG 456 (740)
Q Consensus 382 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n-~i~~~-~~~~l~~l~~L~~L~l~~n-~~~~~-~~~~~~~~~-~L~~L~ 456 (740)
+|++++|.+.+..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. .+..+..++ +|++|+
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 9999999998888888999999999999999 67642 4555677888999999988 77643 355567778 888888
Q ss_pred ccCCc--CCCCCCCCCCCCcCCccCchhhhccccCcEEEccccc-ccccccccccCCCcccEEeCCCccccCCCCCcccc
Q 038858 457 ISDNN--ISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNN-LEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDN 533 (740)
Q Consensus 457 l~~n~--l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 533 (740)
+++|. ++. +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +..+..+
T Consensus 202 l~~~~~~~~~------------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~-- 265 (336)
T 2ast_B 202 LSGYRKNLQK------------SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPETL-- 265 (336)
T ss_dssp CCSCGGGSCH------------HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGGGG--
T ss_pred eCCCcccCCH------------HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHHHH--
Confidence 88884 320 2455666777888888888887 665666677777777777777774 1111111
Q ss_pred cccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCc-CCCcEEECCCCcCCccCchhhh
Q 038858 534 TALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNL-RHIESLDLYHNKLNGKIPCQLV 612 (740)
Q Consensus 534 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~ 612 (740)
..+..+++|+.|++++| ++. ..+..+ .+++.|++++|++++..|..+.
T Consensus 266 ---------------------------~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 266 ---------------------------LELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp ---------------------------GGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred ---------------------------HHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCccc
Confidence 13445566666666666 332 222222 2244555677777766665543
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=192.89 Aligned_cols=227 Identities=18% Similarity=0.168 Sum_probs=126.3
Q ss_pred CCCCEEEccCCCCcccCchHh--hhcCCCCCEEeccCCcccCCCCCCC--CCCCCcCEEeccCCcCcccCCh---hHhhc
Q 038858 231 NKLEDVDLSHIKMNGEFPNWL--LENNTKLESLSLVNDSLAGPFRLPI--HSHKSLRLLDVSNNNFQGRIPA---EIGDI 303 (740)
Q Consensus 231 ~~L~~L~l~~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~n~l~~~~~~---~~~~~ 303 (740)
..++.+.+.++.+.......+ ...+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..+. .....
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 357788888877754322211 1234679999999998888777776 7888899999999988754441 11124
Q ss_pred CCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCc--cC-hhhhhcCccCcEEEcCCccccccCCc---CCCCC
Q 038858 304 LPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGE--IP-EHLAIGCVNLEILVLSNNNLEGHMFS---KNFNL 377 (740)
Q Consensus 304 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l 377 (740)
+++|++|++++|.+++..+..|..+++|++|++++|++.+. ++ ......+++|++|++++|+++..... .+..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 77888888888888877777788888888888888876532 11 11112345555555555555321110 12234
Q ss_pred CCCCeEEccCCcccccCccccccC---CCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccE
Q 038858 378 TKLSWLLLEDNHFVEEIPQSLSKC---LSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQI 454 (740)
Q Consensus 378 ~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 454 (740)
++|++|++++|++.+..|..+..+ ++|++|++++|.++ .+|..+. ++|+.|++++|++++. |. +..+++|+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence 444444444444444433333333 34444444444444 2333222 3444444444444432 11 333344444
Q ss_pred EeccCCcC
Q 038858 455 LGISDNNI 462 (740)
Q Consensus 455 L~l~~n~l 462 (740)
|++++|++
T Consensus 299 L~L~~N~l 306 (310)
T 4glp_A 299 LTLDGNPF 306 (310)
T ss_dssp EECSSTTT
T ss_pred EECcCCCC
Confidence 44444443
No 96
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=2.3e-20 Score=190.49 Aligned_cols=208 Identities=20% Similarity=0.326 Sum_probs=173.8
Q ss_pred EEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhcc
Q 038858 407 LHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGL 486 (740)
Q Consensus 407 L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l 486 (740)
+.+..+.+.+.. ....+++|++|++++|.+... + .+..+++|++|++++|.+. .++. +..+
T Consensus 24 ~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~--------------~~~~-~~~l 84 (308)
T 1h6u_A 24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQIT--------------DLAP-LKNL 84 (308)
T ss_dssp HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC--------------CCGG-GTTC
T ss_pred HHhCCCCcCcee--cHHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCC--------------CChh-HccC
Confidence 344455554322 244688999999999999854 3 6888999999999999987 4444 8889
Q ss_pred ccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCC
Q 038858 487 LRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNL 566 (740)
Q Consensus 487 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 566 (740)
++|++|++++|.+++. ..+..+++|++|++++|.+++..+ +.. +++|+.|++++|.+++..+ +..+
T Consensus 85 ~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~--l~~--------l~~L~~L~l~~n~l~~~~~--l~~l 150 (308)
T 1h6u_A 85 TKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTP--LAG--------LSNLQVLYLDLNQITNISP--LAGL 150 (308)
T ss_dssp CSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCCGG--GTT--------CTTCCEEECCSSCCCCCGG--GGGC
T ss_pred CCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCchh--hcC--------CCCCCEEECCCCccCcCcc--ccCC
Confidence 9999999999999854 368899999999999999986432 433 6899999999999986543 8899
Q ss_pred CcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCcccc
Q 038858 567 TRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNY 646 (740)
Q Consensus 567 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~ 646 (740)
++|+.|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|++|++++|++++..| +..+++|+.+++
T Consensus 151 ~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l 224 (308)
T 1h6u_A 151 TNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224 (308)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEE
T ss_pred CCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEc
Confidence 999999999999997544 9999999999999999986544 8899999999999999998764 588899999999
Q ss_pred CCCCCCC
Q 038858 647 KGNPFLC 653 (740)
Q Consensus 647 ~~Np~~C 653 (740)
++|++.+
T Consensus 225 ~~N~i~~ 231 (308)
T 1h6u_A 225 TNQTITN 231 (308)
T ss_dssp EEEEEEC
T ss_pred cCCeeec
Confidence 9999865
No 97
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.83 E-value=1.3e-20 Score=197.09 Aligned_cols=161 Identities=22% Similarity=0.205 Sum_probs=126.2
Q ss_pred cCcEEEccccccccccccccc-CCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCC
Q 038858 488 RLSHLILAHNNLEGEVPVQLC-GLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNL 566 (740)
Q Consensus 488 ~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 566 (740)
.++.|++++|.+++..+..+. .+++|+.|+|++|.+++..+..|.. +++|+.|+|++|++....+..|..+
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~--------l~~L~~L~Ls~N~l~~~~~~~~~~l 111 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP--------VPNLRYLDLSSNHLHTLDEFLFSDL 111 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTT--------CTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccC--------CCCCCEEECCCCcCCcCCHHHhCCC
Confidence 467777777777766666666 7788888888888887776666665 5688888888888887777778888
Q ss_pred CcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhh---hcCCCCCEEEccCCcccccCCCCCccccC--C
Q 038858 567 TRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQL---VELNALVVFSVAYNNLSGKIPEMTTQFAT--F 641 (740)
Q Consensus 567 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~l~~N~l~~~~~~~~~~~~~--l 641 (740)
++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..| ..+++|+.|++++|++++..+..+..++. +
T Consensus 112 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l 191 (361)
T 2xot_A 112 QALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHH
T ss_pred cCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhc
Confidence 888888998888888878888888899999999998886555444 56888999999999988766665566665 4
Q ss_pred CccccCCCCCCCCCC
Q 038858 642 NESNYKGNPFLCGLP 656 (740)
Q Consensus 642 ~~~~~~~Np~~C~~~ 656 (740)
+.+++.+|||.|+|+
T Consensus 192 ~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 192 NGLYLHNNPLECDCK 206 (361)
T ss_dssp TTEECCSSCEECCHH
T ss_pred ceEEecCCCccCCcC
Confidence 789999999999995
No 98
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=2.3e-19 Score=174.53 Aligned_cols=156 Identities=25% Similarity=0.324 Sum_probs=127.0
Q ss_pred CcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCc
Q 038858 489 LSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTR 568 (740)
Q Consensus 489 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 568 (740)
.+.++++++.++ .+|..+. ++|+.|++++|.+.+..|..|.. +++|+.|++++|.+....+..|..+++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~--------l~~L~~L~L~~N~l~~i~~~~~~~l~~ 89 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDS--------LINLKELYLGSNQLGALPVGVFDSLTQ 89 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTT--------CTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhC--------ccCCcEEECCCCCCCCcChhhcccCCC
Confidence 456777777666 3343332 67888888888887777766665 567888888888887666677888899
Q ss_pred CcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCC
Q 038858 569 IQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKG 648 (740)
Q Consensus 569 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~ 648 (740)
|+.|+|++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.+++.+
T Consensus 90 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred cCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 999999999999887788889999999999999998 7788888999999999999999988878788889999999999
Q ss_pred CCCCCCCC
Q 038858 649 NPFLCGLP 656 (740)
Q Consensus 649 Np~~C~~~ 656 (740)
|||.|+|+
T Consensus 169 N~~~c~c~ 176 (229)
T 3e6j_A 169 NPWDCECR 176 (229)
T ss_dssp SCBCTTBG
T ss_pred CCccCCcc
Confidence 99999986
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=5.9e-19 Score=183.78 Aligned_cols=125 Identities=16% Similarity=0.161 Sum_probs=76.5
Q ss_pred CEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcE-EEc
Q 038858 283 RLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEI-LVL 361 (740)
Q Consensus 283 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~-L~L 361 (740)
++++.++++++ .+|..+ .+++++|++++|+++...+.+|.++++|++|+|++|++.+.++...|.+++++.+ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 46777777777 677654 3467777777777776555677777777777777777765666666656666543 444
Q ss_pred CCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccC
Q 038858 362 SNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNN 411 (740)
Q Consensus 362 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 411 (740)
..|++..+.+..|..+++|++|++++|++....+..+....++..+++.+
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~ 137 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD 137 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEES
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcc
Confidence 44556555555555555555555555555544443343444444454433
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=1.2e-18 Score=181.54 Aligned_cols=240 Identities=22% Similarity=0.184 Sum_probs=129.1
Q ss_pred cEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccC-ccccccCCCCCe-EEc
Q 038858 332 QILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEI-PQSLSKCLSLEG-LHL 409 (740)
Q Consensus 332 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~-L~l 409 (740)
++++.++++++ .+|..+ .+++++|++++|+++.+....|.++++|++|++++|++.+.+ +.+|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45666666776 666554 245677777777777666666667777777777777765443 345666666654 444
Q ss_pred cCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCC-cCCCCCCCCCCCCcCCccCchhhhcc-c
Q 038858 410 NNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDN-NISGSLPSYLSYNRLNGSIPDRIDGL-L 487 (740)
Q Consensus 410 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~n~l~~~~~~~~~~l-~ 487 (740)
+.|+++...+..|..+++|++|++++|++....+..+....++..+++.++ .+. . ..+..|..+ .
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~------------l~~~~f~~~~~ 154 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-T------------IERNSFVGLSF 154 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-E------------ECTTSSTTSBS
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-c------------ccccchhhcch
Confidence 556676666666777777777777777776555555555556666666543 332 1 111223333 2
Q ss_pred cCcEEEcccccccccccccccCCCcccEEeCCC-ccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCC
Q 038858 488 RLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSD-NKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNL 566 (740)
Q Consensus 488 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 566 (740)
.++.|++++|.++...+..+ ...+|+++++++ |.+..+.+..|.. +++|+.|++++|+++...+..|.
T Consensus 155 ~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~--------l~~L~~LdLs~N~l~~lp~~~~~-- 223 (350)
T 4ay9_X 155 ESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHG--------ASGPVILDISRTRIHSLPSYGLE-- 223 (350)
T ss_dssp SCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTT--------EECCSEEECTTSCCCCCCSSSCT--
T ss_pred hhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhcc--------CcccchhhcCCCCcCccChhhhc--
Confidence 45556666666653333333 334566666653 4444333334443 34555555555555533332232
Q ss_pred CcCcEEeCcCCcCCCccchhccCcCCCcEEECCCC
Q 038858 567 TRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHN 601 (740)
Q Consensus 567 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N 601 (740)
+|+.|.+.++.-....| .+..+++|+.++++++
T Consensus 224 -~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 224 -NLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp -TCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred -cchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 23333333222111223 2445555555555443
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=4.4e-19 Score=193.97 Aligned_cols=186 Identities=24% Similarity=0.325 Sum_probs=100.4
Q ss_pred CCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEecc
Q 038858 379 KLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGIS 458 (740)
Q Consensus 379 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 458 (740)
+++.|++++|.+.+ +|..+ .++|++|++++|.++ .+| ..+++|+.|++++|.+++ +|. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 56667777666655 33333 256666666666666 344 335666666666666664 333 433 66666666
Q ss_pred CCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccch
Q 038858 459 DNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHE 538 (740)
Q Consensus 459 ~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 538 (740)
+|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|++++ +|. +.
T Consensus 129 ~N~l~~--------------lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~------ 179 (571)
T 3cvr_A 129 NNQLTM--------------LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP------ 179 (571)
T ss_dssp SSCCSC--------------CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC------
T ss_pred CCcCCC--------------CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh------
Confidence 666552 222 34566666666666654 332 34556666666666654 222 22
Q ss_pred hhhccccceEEccCccccccCCcCccCCCcC-------cEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhh
Q 038858 539 RRVLSLLSGIDLSCNKLIGDIPPQIGNLTRI-------QTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQL 611 (740)
Q Consensus 539 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 611 (740)
++|+.|++++|.|+ .+|. |.. +| +.|+|++|.|+. +|..+..+++|+.|+|++|++++.+|..+
T Consensus 180 ----~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 180 ----ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp ----TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred ----CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 25666666666655 3333 332 44 555665555553 34444445555555555555555555554
Q ss_pred hc
Q 038858 612 VE 613 (740)
Q Consensus 612 ~~ 613 (740)
..
T Consensus 251 ~~ 252 (571)
T 3cvr_A 251 SQ 252 (571)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=1e-18 Score=167.61 Aligned_cols=141 Identities=26% Similarity=0.291 Sum_probs=102.7
Q ss_pred hhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcC
Q 038858 483 IDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQ 562 (740)
Q Consensus 483 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 562 (740)
+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.. +++|+.|++++|.+++..+..
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--------l~~L~~L~L~~N~l~~~~~~~ 119 (208)
T 2o6s_A 48 FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK--------LTQLKELALNTNQLQSLPDGV 119 (208)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------CTTCCEEECCSSCCCCCCTTT
T ss_pred hcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC--------ccCCCEEEcCCCcCcccCHhH
Confidence 445555666666666665555555666667777777777766555554544 457777777777777666667
Q ss_pred ccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccc
Q 038858 563 IGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQF 638 (740)
Q Consensus 563 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~ 638 (740)
|..+++|++|++++|.+++..+..|..+++|++|++++|++.+ .++.|++|+++.|+++|.+|..++.+
T Consensus 120 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 120 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred hccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence 7888889999999998887777778889999999999998764 34578889999999999888765544
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=3.9e-18 Score=163.47 Aligned_cols=133 Identities=26% Similarity=0.270 Sum_probs=61.5
Q ss_pred CCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEecc
Q 038858 379 KLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGIS 458 (740)
Q Consensus 379 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 458 (740)
+|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 44444444444443333334444455555555554443333334444555555555555444444444445555555555
Q ss_pred CCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCcccc
Q 038858 459 DNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLH 524 (740)
Q Consensus 459 ~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 524 (740)
+|++++ ..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 109 ~N~l~~-------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 109 TNQLQS-------------LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp SSCCCC-------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCcCcc-------------cCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 544431 11222344444555555555544444444445555555555555443
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=3.5e-18 Score=164.85 Aligned_cols=135 Identities=24% Similarity=0.336 Sum_probs=84.1
Q ss_pred ccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCC
Q 038858 487 LRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNL 566 (740)
Q Consensus 487 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 566 (740)
++++.|++++|.+++..+..|..+++|+.|++++|.+++..|..|.. +++|+.|++++|.++...+..|..+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~--------l~~L~~L~Ls~N~l~~l~~~~f~~l 103 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG--------LRSLNSLVLYGNKITELPKSLFEGL 103 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT--------CSSCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC--------CcCCCEEECCCCcCCccCHhHccCC
Confidence 35555666666655555555666666666666666666555555554 4566666666666665544556666
Q ss_pred CcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccc
Q 038858 567 TRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSG 629 (740)
Q Consensus 567 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 629 (740)
++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++..
T Consensus 104 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 104 FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 666666666666666666666666666666666666665555556666666666666666653
No 105
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.77 E-value=1.9e-18 Score=162.73 Aligned_cols=150 Identities=19% Similarity=0.299 Sum_probs=123.4
Q ss_pred cEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCC
Q 038858 514 QLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHI 593 (740)
Q Consensus 514 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 593 (740)
+.+++++|.++.. |..+. +.|++|++++|.++ .+|..|..+++|+.|+|++|.+++..+..|.++++|
T Consensus 13 ~~l~~~~~~l~~i-p~~~~----------~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L 80 (193)
T 2wfh_A 13 TVVRCSNKGLKVL-PKGIP----------RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80 (193)
T ss_dssp TEEECTTSCCSSC-CSCCC----------TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEEcCCCCCCcC-CCCCC----------CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC
Confidence 5677777777643 33332 37888888888887 667888999999999999999998888889999999
Q ss_pred cEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCCCCCCC----------------
Q 038858 594 ESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPL---------------- 657 (740)
Q Consensus 594 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~---------------- 657 (740)
++|+|++|++++..|..|..+++|++|++++|++++..+..+..+++++.+++++|||.|+|++
T Consensus 81 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~ 160 (193)
T 2wfh_A 81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGI 160 (193)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSC
T ss_pred CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCC
Confidence 9999999999988888899999999999999999988888888899999999999999999963
Q ss_pred CCCCCCCcccccCCCCCC
Q 038858 658 PICRSPVTMLEASTSNEG 675 (740)
Q Consensus 658 ~~c~~~~~~~~~~~~~~~ 675 (740)
..|..|....++......
T Consensus 161 ~~C~~P~~l~g~~l~~~~ 178 (193)
T 2wfh_A 161 ARCAGPGEMADKLLLTTP 178 (193)
T ss_dssp CBEEESGGGTTCBTTTSC
T ss_pred cCcCCchHHCCCCcccCC
Confidence 147777777666554443
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=4.2e-18 Score=164.28 Aligned_cols=135 Identities=23% Similarity=0.277 Sum_probs=99.6
Q ss_pred cCcEEEccccccccccc-ccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCC
Q 038858 488 RLSHLILAHNNLEGEVP-VQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNL 566 (740)
Q Consensus 488 ~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 566 (740)
.+++|++++|.+++..+ ..+..+++|+.|++++|.+++..+..|.. +++|+.|++++|.+++..+..|..+
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~--------l~~L~~L~Ls~N~l~~~~~~~~~~l 104 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG--------ASGVNEILLTSNRLENVQHKMFKGL 104 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT--------CTTCCEEECCSSCCCCCCGGGGTTC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC--------CCCCCEEECCCCccCccCHhHhcCC
Confidence 34566666666665533 34666777777777777776666656655 4577777777777776666677788
Q ss_pred CcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCccccc
Q 038858 567 TRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGK 630 (740)
Q Consensus 567 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 630 (740)
++|++|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|++|++++|++++.
T Consensus 105 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 105 ESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred cCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 8888888888888877778888888888888888888877777888888888888888888754
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=8.1e-18 Score=169.96 Aligned_cols=130 Identities=24% Similarity=0.351 Sum_probs=81.2
Q ss_pred hhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcC
Q 038858 483 IDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQ 562 (740)
Q Consensus 483 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 562 (740)
+..+++|+.|++++|.+++. ..+..+++|++|++++|.+.+. ..+. .+++|+.|++++|.+++. ..
T Consensus 86 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~--------~l~~L~~L~l~~n~l~~~--~~ 151 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLV--------HLPQLESLYLGNNKITDI--TV 151 (291)
T ss_dssp GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGG--------GCTTCCEEECCSSCCCCC--GG
T ss_pred cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhc--------CCCCCCEEEccCCcCCcc--hh
Confidence 33444444444444444421 1245555555555555555432 1122 245666666666666643 45
Q ss_pred ccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCccccc
Q 038858 563 IGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGK 630 (740)
Q Consensus 563 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 630 (740)
+..+++|+.|++++|++++..+ +..+++|++|++++|++++ ++ .+..+++|+.|++++|+++..
T Consensus 152 l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 152 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred hccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence 6777788888888888876544 7778888888888888874 34 377788888888888887754
No 108
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=4.3e-18 Score=160.51 Aligned_cols=150 Identities=23% Similarity=0.325 Sum_probs=105.1
Q ss_pred cEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCc-CccCCCcCcEEeCcCCcCCCccchhccCcCC
Q 038858 514 QLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPP-QIGNLTRIQTLNLSHNNLTGTILSTFTNLRH 592 (740)
Q Consensus 514 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 592 (740)
+.+++++|.+.. +|..+. ..+++|++++|.+.+..+. .|..+++|++|+|++|++++..|..|.++++
T Consensus 11 ~~l~~s~~~l~~-ip~~~~----------~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 79 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDIP----------LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79 (192)
T ss_dssp TEEECTTSCCSS-CCSCCC----------TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred CEEEcCCCCcCc-CccCCC----------CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCccc
Confidence 556666666642 333221 2566777777777655543 4677777888888888887777777777888
Q ss_pred CcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCCCCCCC---------------
Q 038858 593 IESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPL--------------- 657 (740)
Q Consensus 593 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~--------------- 657 (740)
|++|+|++|++++..+..|..+++|++|++++|++++..|..+..+++++.+++++|||.|+|+.
T Consensus 80 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~ 159 (192)
T 1w8a_A 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGG 159 (192)
T ss_dssp CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGG
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCC
Confidence 88888888888777777777778888888888888877777777777888888888888888763
Q ss_pred -CCCCCCCcccccCCCCC
Q 038858 658 -PICRSPVTMLEASTSNE 674 (740)
Q Consensus 658 -~~c~~~~~~~~~~~~~~ 674 (740)
..|..|....+......
T Consensus 160 ~~~C~~P~~l~~~~l~~l 177 (192)
T 1w8a_A 160 AARCGAPSKVRDVQIKDL 177 (192)
T ss_dssp GCBBCSSTTTTTSBGGGS
T ss_pred CCCCCCChHHcCCChhhC
Confidence 15777766665544333
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=1e-17 Score=183.28 Aligned_cols=186 Identities=26% Similarity=0.364 Sum_probs=109.4
Q ss_pred CCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchh
Q 038858 403 SLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDR 482 (740)
Q Consensus 403 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~ 482 (740)
+++.|++++|.+++ +|..+ .++|+.|++++|.++ .+| ..+++|+.|++++|.+++ +|.
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~--------------ip~- 117 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST--------------LPE- 117 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC--------------CCC-
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC--------------cch-
Confidence 66677777766664 44433 256677777777666 333 335666777777666652 222
Q ss_pred hhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcC
Q 038858 483 IDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQ 562 (740)
Q Consensus 483 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 562 (740)
+.. +|+.|++++|.+++ +|. .+++|+.|++++|.++++ |. . +++|+.|++++|.+++ +|.
T Consensus 118 l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-p~---~--------l~~L~~L~Ls~N~L~~-lp~- 177 (571)
T 3cvr_A 118 LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTML-PE---L--------PTSLEVLSVRNNQLTF-LPE- 177 (571)
T ss_dssp CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC---C--------CTTCCEEECCSSCCSC-CCC-
T ss_pred hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCcC-CC---c--------CCCcCEEECCCCCCCC-cch-
Confidence 222 66677777776664 333 456677777777766652 22 1 3466677777776664 444
Q ss_pred ccCCCcCcEEeCcCCcCCCccchhccCcCCC-------cEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCC
Q 038858 563 IGNLTRIQTLNLSHNNLTGTILSTFTNLRHI-------ESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMT 635 (740)
Q Consensus 563 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 635 (740)
|. ++|+.|+|++|+|+. +|. |.. +| +.|+|++|+++ .+|..+..+++|+.|++++|++++.+|..+
T Consensus 178 l~--~~L~~L~Ls~N~L~~-lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 178 LP--ESLEALDVSTNLLES-LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp CC--TTCCEEECCSSCCSS-CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred hh--CCCCEEECcCCCCCc-hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 44 667777777776663 333 433 55 66777777666 456556666677777777777666655544
Q ss_pred cc
Q 038858 636 TQ 637 (740)
Q Consensus 636 ~~ 637 (740)
..
T Consensus 251 ~~ 252 (571)
T 3cvr_A 251 SQ 252 (571)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=3.6e-18 Score=172.57 Aligned_cols=191 Identities=21% Similarity=0.309 Sum_probs=156.6
Q ss_pred cCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccc
Q 038858 426 TGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPV 505 (740)
Q Consensus 426 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 505 (740)
..+..+.+..+.+.+. ..+..+++|+.|++++|.+. .++ .+..+++|++|++++|.+++..+
T Consensus 24 ~~~~~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~--------------~~~-~~~~l~~L~~L~L~~n~l~~~~~- 85 (291)
T 1h6t_A 24 AETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIK--------------SVQ-GIQYLPNVTKLFLNGNKLTDIKP- 85 (291)
T ss_dssp HHHHHHHTTCSCTTSE--ECHHHHHTCCEEECTTSCCC--------------CCT-TGGGCTTCCEEECCSSCCCCCGG-
T ss_pred HHHHHHHhcCCCcccc--cchhhcCcccEEEccCCCcc--------------cCh-hHhcCCCCCEEEccCCccCCCcc-
Confidence 3444555666665533 23456788999999998876 333 37788999999999999986555
Q ss_pred cccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccch
Q 038858 506 QLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILS 585 (740)
Q Consensus 506 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 585 (740)
+..+++|+.|++++|.+.+.. .+.. +++|+.|++++|.+.+. ..+..+++|+.|++++|++++. .
T Consensus 86 -l~~l~~L~~L~l~~n~l~~~~--~l~~--------l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~ 150 (291)
T 1h6t_A 86 -LANLKNLGWLFLDENKVKDLS--SLKD--------LKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--T 150 (291)
T ss_dssp -GTTCTTCCEEECCSSCCCCGG--GGTT--------CTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--G
T ss_pred -cccCCCCCEEECCCCcCCCCh--hhcc--------CCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--h
Confidence 899999999999999997632 2333 68999999999999864 5688999999999999999975 6
Q ss_pred hccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCCC
Q 038858 586 TFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLC 653 (740)
Q Consensus 586 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C 653 (740)
.+..+++|++|++++|++++..| +..+++|+.|++++|++++. |. +..+++|+.+++++|+..+
T Consensus 151 ~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 151 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GG-GTTCTTCSEEEEEEEEEEC
T ss_pred hhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-hh-hccCCCCCEEECcCCcccC
Confidence 89999999999999999997655 89999999999999999975 44 6888999999999998765
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.8e-17 Score=183.54 Aligned_cols=131 Identities=24% Similarity=0.332 Sum_probs=70.5
Q ss_pred hhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcC
Q 038858 483 IDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQ 562 (740)
Q Consensus 483 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 562 (740)
+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+. ..+. .+++|+.|+|++|.+++. ..
T Consensus 83 l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~--------~l~~L~~L~Ls~N~l~~l--~~ 148 (605)
T 1m9s_A 83 LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLV--------HLPQLESLYLGNNKITDI--TV 148 (605)
T ss_dssp GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGG--------GCTTCSEEECCSSCCCCC--GG
T ss_pred hccCCCCCEEECcCCCCCCC--hhhccCCCCCEEEecCCCCCCC--cccc--------CCCccCEEECCCCccCCc--hh
Confidence 33444444444444444421 1344455555555555555432 1121 144555555555555543 34
Q ss_pred ccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccC
Q 038858 563 IGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKI 631 (740)
Q Consensus 563 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 631 (740)
+..+++|+.|+|++|.+++..+ +..+++|+.|+|++|++++. | .+..+++|+.|++++|++++..
T Consensus 149 l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 149 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp GGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECCC
T ss_pred hcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCCc
Confidence 5566666666666666665444 66666666666666666643 2 4566666666666666666543
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=1.1e-17 Score=174.97 Aligned_cols=176 Identities=23% Similarity=0.219 Sum_probs=116.0
Q ss_pred CeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCcccc-CCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhh
Q 038858 405 EGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFC-QLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRI 483 (740)
Q Consensus 405 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~ 483 (740)
+.++++++.++ .+|..+. +.++.|++++|.+++..+..+. .+++|+.|++++|++++ ..+..|
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~-------------i~~~~~ 84 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-------------ISSEAF 84 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE-------------ECTTTT
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc-------------cChhhc
Confidence 57788888776 4555443 4577788888887766666666 77777777777777652 233456
Q ss_pred hccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCc
Q 038858 484 DGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQI 563 (740)
Q Consensus 484 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 563 (740)
.++++|++|+|++|.+++..+..|..+++|+.|+|++|++.+..+..|.. +++|+.|+|++|.+++..+..|
T Consensus 85 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~--------l~~L~~L~L~~N~l~~l~~~~~ 156 (361)
T 2xot_A 85 VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED--------MAQLQKLYLSQNQISRFPVELI 156 (361)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT--------CTTCCEEECCSSCCCSCCGGGT
T ss_pred cCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCC--------cccCCEEECCCCcCCeeCHHHh
Confidence 66777777777777777666666777777777777777776666655555 4567777777777665443444
Q ss_pred ---cCCCcCcEEeCcCCcCCCccchhccCcCC--CcEEECCCCcCC
Q 038858 564 ---GNLTRIQTLNLSHNNLTGTILSTFTNLRH--IESLDLYHNKLN 604 (740)
Q Consensus 564 ---~~l~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~Ls~N~l~ 604 (740)
..+++|+.|+|++|++++..+..|..++. ++.|+|++|++.
T Consensus 157 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp C----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 44666677777777666655566666665 366666666665
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=3.3e-17 Score=159.18 Aligned_cols=137 Identities=24% Similarity=0.233 Sum_probs=104.8
Q ss_pred ccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCC
Q 038858 487 LRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNL 566 (740)
Q Consensus 487 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 566 (740)
++|+.|++++|.+++..+..+..+++|+.|++++|.+....+..|.. +++|+.|++++|.+++..+..|..+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~--------l~~L~~L~Ls~N~l~~l~~~~~~~l 111 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS--------LTQLTVLDLGTNQLTVLPSAVFDRL 111 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------CTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc--------CCCcCEEECCCCcCCccChhHhCcc
Confidence 56777777777777666777777777777777777776665555555 5678888888888876666677888
Q ss_pred CcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCC
Q 038858 567 TRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIP 632 (740)
Q Consensus 567 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 632 (740)
++|++|+|++|+++ .+|..+..+++|++|+|++|++++..+..|..+++|+.|++++|++.+..+
T Consensus 112 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 112 VHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred hhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 88888888888888 567777888888888888888886666677888888888888888876443
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=1.6e-17 Score=164.99 Aligned_cols=174 Identities=21% Similarity=0.247 Sum_probs=134.7
Q ss_pred CccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccc
Q 038858 424 NLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEV 503 (740)
Q Consensus 424 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 503 (740)
.+.++..++++++.+++.. .+..+++|+.|++++|.++ .++ .+..+++|++|++++|.+++..
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~--------------~l~-~l~~l~~L~~L~L~~N~i~~~~ 79 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ--------------SLA-GMQFFTNLKELHLSHNQISDLS 79 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC--------------CCT-TGGGCTTCCEEECCSSCCCCCG
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc--------------cch-HHhhCCCCCEEECCCCccCCCh
Confidence 4566777777777776443 4667788888888888776 334 4677888888888888887655
Q ss_pred cccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCcc
Q 038858 504 PVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTI 583 (740)
Q Consensus 504 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 583 (740)
+ +..+++|+.|++++|++++..+... ++|+.|++++|.+++. +.+..+++|+.|++++|++++.
T Consensus 80 ~--l~~l~~L~~L~L~~N~l~~l~~~~~-----------~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~- 143 (263)
T 1xeu_A 80 P--LKDLTKLEELSVNRNRLKNLNGIPS-----------ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI- 143 (263)
T ss_dssp G--GTTCSSCCEEECCSSCCSCCTTCCC-----------SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-
T ss_pred h--hccCCCCCEEECCCCccCCcCcccc-----------CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-
Confidence 4 7888888888888888876433111 4788999999988864 3588899999999999999875
Q ss_pred chhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCC
Q 038858 584 LSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPE 633 (740)
Q Consensus 584 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 633 (740)
..+..+++|++|++++|++++. ..+..+++|+.|++++|++++....
T Consensus 144 -~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~~ 190 (263)
T 1xeu_A 144 -VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPVK 190 (263)
T ss_dssp -GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCEE
T ss_pred -hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCccc
Confidence 3788899999999999999866 5688899999999999999876433
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=2e-17 Score=183.10 Aligned_cols=188 Identities=22% Similarity=0.365 Sum_probs=92.6
Q ss_pred CcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccC
Q 038858 356 LEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPE 435 (740)
Q Consensus 356 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~ 435 (740)
+..+.+..+.+.+... ...+++|+.|++++|.+... + .+..+++|+.|++++|.+.+..+ +..+++|+.|++++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 3344444444433221 23455555566665555433 1 34555555555555555553322 44555555555555
Q ss_pred CcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccE
Q 038858 436 NHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQL 515 (740)
Q Consensus 436 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 515 (740)
|.+.+. ..+..+++|+.|++++|.+. .+ ..+..+++|+.|+|++|.+++. ..+..++
T Consensus 97 N~l~~l--~~l~~l~~L~~L~Ls~N~l~--------------~l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~---- 153 (605)
T 1m9s_A 97 NKIKDL--SSLKDLKKLKSLSLEHNGIS--------------DI-NGLVHLPQLESLYLGNNKITDI--TVLSRLT---- 153 (605)
T ss_dssp SCCCCC--TTSTTCTTCCEEECTTSCCC--------------CC-GGGGGCTTCSEEECCSSCCCCC--GGGGSCT----
T ss_pred CCCCCC--hhhccCCCCCEEEecCCCCC--------------CC-ccccCCCccCEEECCCCccCCc--hhhcccC----
Confidence 555432 13444555555555555443 11 1234444444444444444432 2344444
Q ss_pred EeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcE
Q 038858 516 LDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIES 595 (740)
Q Consensus 516 L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 595 (740)
+|+.|+|++|.+.+..| +..+++|+.|+|++|.+++. ..+..+++|+.
T Consensus 154 ----------------------------~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~ 201 (605)
T 1m9s_A 154 ----------------------------KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDV 201 (605)
T ss_dssp ----------------------------TCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSE
T ss_pred ----------------------------CCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCE
Confidence 55555555555554333 55556666666666666542 34555666666
Q ss_pred EECCCCcCC
Q 038858 596 LDLYHNKLN 604 (740)
Q Consensus 596 L~Ls~N~l~ 604 (740)
|+|++|++.
T Consensus 202 L~L~~N~l~ 210 (605)
T 1m9s_A 202 LELFSQECL 210 (605)
T ss_dssp EECCSEEEE
T ss_pred EEccCCcCc
Confidence 666666655
No 116
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=3.8e-17 Score=168.57 Aligned_cols=102 Identities=18% Similarity=0.106 Sum_probs=63.4
Q ss_pred CCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCc-EEeCcCCcCCCccchhcc
Q 038858 510 LNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQ-TLNLSHNNLTGTILSTFT 588 (740)
Q Consensus 510 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~ 588 (740)
+++|+.+++++|.++.+.+.+|.. +++|+.+++.+| +..+.+.+|.++++|+ .+++.+ .++.+.+.+|.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~--------~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~ 294 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQ--------KKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFM 294 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTT--------CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTT
T ss_pred cCCCeEEECCCCCcceecHhhhhC--------CCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhh
Confidence 455666666665555555555554 345666666655 5545556666666666 666666 55555566677
Q ss_pred CcCCCcEEECCCCcCCccCchhhhcCCCCCEEE
Q 038858 589 NLRHIESLDLYHNKLNGKIPCQLVELNALVVFS 621 (740)
Q Consensus 589 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 621 (740)
++++|+.+++++|.++...+..|.++++|+.+.
T Consensus 295 ~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 295 GCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 777777777766666656666666666666654
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=5.6e-17 Score=153.73 Aligned_cols=132 Identities=17% Similarity=0.279 Sum_probs=67.6
Q ss_pred hhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcC
Q 038858 483 IDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQ 562 (740)
Q Consensus 483 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 562 (740)
+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..+.. +++|+.|++++|.+++..+..
T Consensus 62 l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~--------l~~L~~L~Ls~n~i~~~~~~~ 131 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG--------LTSLTLLDISHSAHDDSILTK 131 (197)
T ss_dssp GGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT--------CTTCCEEECCSSBCBGGGHHH
T ss_pred HhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC--------CCCCCEEEecCCccCcHhHHH
Confidence 444444555555544332 1123444555555555555554433333333 345555555555555444455
Q ss_pred ccCCCcCcEEeCcCCc-CCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCccc
Q 038858 563 IGNLTRIQTLNLSHNN-LTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLS 628 (740)
Q Consensus 563 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 628 (740)
+..+++|++|++++|. ++. ++ .+..+++|++|++++|++++ ++ .+..+++|++|++++|++.
T Consensus 132 l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 132 INTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp HTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred HhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 5566666666666665 443 22 46666666666666666653 22 4556666666666666654
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=4.2e-17 Score=168.25 Aligned_cols=102 Identities=13% Similarity=0.056 Sum_probs=81.1
Q ss_pred ccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCc-EEECCCCcCCccCchhhhcCCCCCEE
Q 038858 542 LSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIE-SLDLYHNKLNGKIPCQLVELNALVVF 620 (740)
Q Consensus 542 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L 620 (740)
+++|+.+++++|+++.+.+.+|.++++|+.|+|.+| ++.+...+|.++++|+ .+++.+ .++...+..|..+++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 467888888888888777777888888888888887 7767777888888888 888887 6766667788888888888
Q ss_pred EccCCcccccCCCCCccccCCCccc
Q 038858 621 SVAYNNLSGKIPEMTTQFATFNESN 645 (740)
Q Consensus 621 ~l~~N~l~~~~~~~~~~~~~l~~~~ 645 (740)
++++|+++...+.+|..+++|+.+.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 8888888888777787777777654
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=3.2e-19 Score=196.34 Aligned_cols=120 Identities=25% Similarity=0.359 Sum_probs=95.6
Q ss_pred cccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcC
Q 038858 512 QLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLR 591 (740)
Q Consensus 512 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 591 (740)
.|+.|++++|.+++. |. +.. +++|+.|++++|.++ .+|..++.+++|+.|+|++|.+++ +| .|..++
T Consensus 442 ~L~~L~Ls~n~l~~l-p~-~~~--------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~ 508 (567)
T 1dce_A 442 DVRVLHLAHKDLTVL-CH-LEQ--------LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLP 508 (567)
T ss_dssp TCSEEECTTSCCSSC-CC-GGG--------GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCS
T ss_pred CceEEEecCCCCCCC-cC-ccc--------cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCC
Confidence 488888888888764 43 544 678889999999888 678888889999999999999987 45 888899
Q ss_pred CCcEEECCCCcCCccC-chhhhcCCCCCEEEccCCcccccCCCCCc---cccCCCcc
Q 038858 592 HIESLDLYHNKLNGKI-PCQLVELNALVVFSVAYNNLSGKIPEMTT---QFATFNES 644 (740)
Q Consensus 592 ~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~---~~~~l~~~ 644 (740)
+|+.|+|++|++++.. |..+..+++|+.|++++|++++.+|.... .+++|+.+
T Consensus 509 ~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 509 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 9999999999998776 88888999999999999999887665321 24555544
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=6.5e-17 Score=160.56 Aligned_cols=171 Identities=20% Similarity=0.273 Sum_probs=144.8
Q ss_pred CCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCC
Q 038858 448 QLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLI 527 (740)
Q Consensus 448 ~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 527 (740)
.+..+..++++++.++ .++ .+..+++|+.|++++|.++. .+ .+..+++|+.|++++|++++..
T Consensus 17 ~l~~l~~l~l~~~~i~--------------~~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~ 79 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVT--------------DLV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLS 79 (263)
T ss_dssp HHHHHHHHHHTCSCTT--------------SEE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG
T ss_pred HHHHHHHHHhcCCCcc--------------ccc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCCh
Confidence 3566778888888876 333 47889999999999999984 44 6889999999999999998765
Q ss_pred CCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccC
Q 038858 528 PPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKI 607 (740)
Q Consensus 528 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 607 (740)
+ +.. +++|+.|++++|++++. |. +.. ++|+.|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 80 ~--l~~--------l~~L~~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~- 143 (263)
T 1xeu_A 80 P--LKD--------LTKLEELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI- 143 (263)
T ss_dssp G--GTT--------CSSCCEEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-
T ss_pred h--hcc--------CCCCCEEECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-
Confidence 4 544 68999999999999964 33 333 8999999999999974 4699999999999999999865
Q ss_pred chhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCCCC
Q 038858 608 PCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCG 654 (740)
Q Consensus 608 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~ 654 (740)
+ .+..+++|++|++++|++++. ..+..+++|+.+++++|++.|.
T Consensus 144 ~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 144 V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 4 689999999999999999987 4568899999999999998875
No 121
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=1.8e-16 Score=150.14 Aligned_cols=153 Identities=18% Similarity=0.271 Sum_probs=132.1
Q ss_pred hhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcC
Q 038858 483 IDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQ 562 (740)
Q Consensus 483 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 562 (740)
...+++|+.|++++|.++ ..+ .+..+++|++|++++|.+... ..+.. +++|+.|++++|.+++..+..
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~--~~l~~--------l~~L~~L~l~~n~l~~~~~~~ 107 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNY--NPISG--------LSNLERLRIMGKDVTSDKIPN 107 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCC--GGGTT--------CTTCCEEEEECTTCBGGGSCC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcc--hhhhc--------CCCCCEEEeECCccCcccChh
Confidence 367889999999999998 444 688999999999999976532 23433 689999999999999878889
Q ss_pred ccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCc-CCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCC
Q 038858 563 IGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNK-LNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATF 641 (740)
Q Consensus 563 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l 641 (740)
+..+++|++|++++|++++..+..+..+++|++|++++|+ ++ .+| .+..+++|++|++++|++++.. .+..+++|
T Consensus 108 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L 183 (197)
T 4ezg_A 108 LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKL 183 (197)
T ss_dssp CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSC
T ss_pred hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCC
Confidence 9999999999999999998889999999999999999998 65 556 6899999999999999999744 46889999
Q ss_pred CccccCCCCC
Q 038858 642 NESNYKGNPF 651 (740)
Q Consensus 642 ~~~~~~~Np~ 651 (740)
+.+++++|+.
T Consensus 184 ~~L~l~~N~i 193 (197)
T 4ezg_A 184 NQLYAFSQTI 193 (197)
T ss_dssp CEEEECBC--
T ss_pred CEEEeeCccc
Confidence 9999999985
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=1.9e-16 Score=149.15 Aligned_cols=113 Identities=27% Similarity=0.362 Sum_probs=71.1
Q ss_pred cCcEEEcccccccccccc-cccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCC
Q 038858 488 RLSHLILAHNNLEGEVPV-QLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNL 566 (740)
Q Consensus 488 ~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 566 (740)
++++|++++|.+++..+. .+..+++|++|++++|.+++..|..|.. +++|+.|++++|++++..+..|..+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------l~~L~~L~Ls~N~l~~~~~~~~~~l 101 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG--------ASHIQELQLGENKIKEISNKMFLGL 101 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT--------CTTCCEEECCSCCCCEECSSSSTTC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC--------cccCCEEECCCCcCCccCHHHhcCC
Confidence 556666666666544443 3556666666666666666655555554 4566666666666666666666666
Q ss_pred CcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCc
Q 038858 567 TRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIP 608 (740)
Q Consensus 567 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 608 (740)
++|++|+|++|++++..|..|..+++|++|++++|++.+..+
T Consensus 102 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 102 HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 677777777777766666666667777777777777665443
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=1.4e-18 Score=191.30 Aligned_cols=122 Identities=27% Similarity=0.308 Sum_probs=103.4
Q ss_pred cCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCC
Q 038858 488 RLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLT 567 (740)
Q Consensus 488 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 567 (740)
.|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..+.. +++|+.|++++|.+++ +| .++.++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~--------l~~L~~L~Ls~N~l~~-lp-~l~~l~ 508 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA--------LRCLEVLQASDNALEN-VD-GVANLP 508 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG--------CTTCCEEECCSSCCCC-CG-GGTTCS
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc--------CCCCCEEECCCCCCCC-Cc-ccCCCC
Confidence 58899999999985 454 888999999999999988 55666665 6799999999999986 56 789999
Q ss_pred cCcEEeCcCCcCCCcc-chhccCcCCCcEEECCCCcCCccCch---hhhcCCCCCEEEc
Q 038858 568 RIQTLNLSHNNLTGTI-LSTFTNLRHIESLDLYHNKLNGKIPC---QLVELNALVVFSV 622 (740)
Q Consensus 568 ~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~l 622 (740)
+|+.|+|++|++++.. |..|..+++|+.|+|++|++++..|. .+..+++|+.|++
T Consensus 509 ~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 509 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9999999999999887 99999999999999999999876553 2445899999874
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=7.5e-16 Score=143.23 Aligned_cols=133 Identities=20% Similarity=0.231 Sum_probs=98.4
Q ss_pred ccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCC
Q 038858 513 LQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRH 592 (740)
Q Consensus 513 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 592 (740)
.+.++++++.+.... ..+ .++|+.|++++|++.+..+..|..+++|++|++++|++++..+..|..+++
T Consensus 9 ~~~l~~~~~~l~~~p-~~~----------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 77 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVP-TGI----------PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK 77 (177)
T ss_dssp TTEEECCSSCCSSCC-TTC----------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCEEEecCCCCccCC-CCC----------CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCc
Confidence 356666666665332 222 236777777777777666666777888888888888888776777788888
Q ss_pred CcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCCCCCC
Q 038858 593 IESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLP 656 (740)
Q Consensus 593 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~ 656 (740)
|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++++.+++++||+.|+|+
T Consensus 78 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 8888888888886666667778888888888888887777666777888888888888888876
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.64 E-value=6e-15 Score=155.11 Aligned_cols=265 Identities=15% Similarity=0.147 Sum_probs=125.8
Q ss_pred CCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeE
Q 038858 304 LPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWL 383 (740)
Q Consensus 304 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 383 (740)
+..++.+.+-+ .++.+...+|.++ +|+.+.+.++ ++ .++...|.++ +|+.+.+.. .+..+...+|.++++|+.+
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 34555555543 2343445555553 4666665544 43 4444444442 455555553 4444444455555555555
Q ss_pred EccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCC
Q 038858 384 LLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNIS 463 (740)
Q Consensus 384 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 463 (740)
++.+|.+......+|. +.+|+.+.+..+ +..+...+|.++++|+.+++..+ ++.+...+|.+
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~--------------- 247 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE--------------- 247 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT---------------
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc---------------
Confidence 5555555444444443 345555555432 33333444444445554444432 22233333333
Q ss_pred CCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCcccc-----CCCCCcccccccch
Q 038858 464 GSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLH-----GLIPPCFDNTALHE 538 (740)
Q Consensus 464 ~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-----~~~~~~~~~~~~~~ 538 (740)
.+|+.+.+. +.++.....+|.++++|+.+++.+|.+. .+.+.+|..
T Consensus 248 -----------------------~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~----- 298 (401)
T 4fdw_A 248 -----------------------SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEG----- 298 (401)
T ss_dssp -----------------------CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTT-----
T ss_pred -----------------------CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhC-----
Confidence 345555552 2333344445555555555555554432 222333333
Q ss_pred hhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCC-CC
Q 038858 539 RRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELN-AL 617 (740)
Q Consensus 539 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L 617 (740)
+++|+.+++. +.+..+...+|.++++|+.++|..+ ++.....+|.++ +|+.+++++|.+....+..|..++ .+
T Consensus 299 ---c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l 372 (401)
T 4fdw_A 299 ---CPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDI 372 (401)
T ss_dssp ---CTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTC
T ss_pred ---CccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCc
Confidence 3345555554 2244344455555566666666433 444445556655 566666666655544444454443 45
Q ss_pred CEEEccCCcc
Q 038858 618 VVFSVAYNNL 627 (740)
Q Consensus 618 ~~L~l~~N~l 627 (740)
+.+.+..+.+
T Consensus 373 ~~l~vp~~~~ 382 (401)
T 4fdw_A 373 TVIRVPAESV 382 (401)
T ss_dssp CEEEECGGGH
T ss_pred cEEEeCHHHH
Confidence 5555554443
No 126
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.63 E-value=1.2e-14 Score=152.83 Aligned_cols=271 Identities=14% Similarity=0.132 Sum_probs=193.7
Q ss_pred CCCcCEEeccCCcCcccCChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcE
Q 038858 279 HKSLRLLDVSNNNFQGRIPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEI 358 (740)
Q Consensus 279 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 358 (740)
+..++.+.+.++ ++ .++...|..+ +|+.+.+..+ ++.+...+|.++ +|+.+.+.+ .+. .++...|.+|++|+.
T Consensus 112 ~~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 112 LKGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKK 184 (401)
T ss_dssp CSSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCE
T ss_pred cCCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCe
Confidence 367778887653 55 6777777654 8999999876 777778889885 799999986 666 788888889999999
Q ss_pred EEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcc
Q 038858 359 LVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHL 438 (740)
Q Consensus 359 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~ 438 (740)
+++.+|.+..+....|. ..+|+.+.+..+ +......+|.+|++|+.+++..+ ++.+...+|.+ .+|+.+.+ .+.+
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i 259 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGV 259 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTC
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCc
Confidence 99999999988888776 689999999855 77777889999999999999875 55566677877 78999999 4556
Q ss_pred cCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeC
Q 038858 439 EGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDL 518 (740)
Q Consensus 439 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 518 (740)
+.+...+|.++++|+.+++.+|.+.. +......+.+|.+|++|+.+.+.+ .++.....+|.++++|+.+.|
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~--------~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFND--------DPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCC--------CTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEE
T ss_pred cEEChhHhhCCCCCCEEEeCCccccC--------CcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEE
Confidence 66777889999999999988876531 011112234455566666666553 344444445555555555555
Q ss_pred CCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcC-CCcEEE
Q 038858 519 SDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLR-HIESLD 597 (740)
Q Consensus 519 ~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~ 597 (740)
..+ ++.+.+.+|.++ +|+.+++++|.+.......|.+++ .++.|+
T Consensus 331 p~~---------------------------------l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~ 376 (401)
T 4fdw_A 331 PAN---------------------------------VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIR 376 (401)
T ss_dssp CTT---------------------------------CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEE
T ss_pred Ccc---------------------------------ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEE
Confidence 332 333445566666 777777777766666666666663 567777
Q ss_pred CCCCcCC
Q 038858 598 LYHNKLN 604 (740)
Q Consensus 598 Ls~N~l~ 604 (740)
+..+.+.
T Consensus 377 vp~~~~~ 383 (401)
T 4fdw_A 377 VPAESVE 383 (401)
T ss_dssp ECGGGHH
T ss_pred eCHHHHH
Confidence 7666543
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=2e-15 Score=138.96 Aligned_cols=134 Identities=21% Similarity=0.277 Sum_probs=92.4
Q ss_pred ccCcEEEccccccc-ccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccC
Q 038858 487 LRLSHLILAHNNLE-GEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGN 565 (740)
Q Consensus 487 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 565 (740)
++|++|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+.. +++|+.|++++|.+.+.+|..+..
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~--------l~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPK--------LPKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCC--------CSSCCEEEEESCCCCSCCCHHHHH
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhcc--------CCCCCEEECcCCcCchHHHHHHhh
Confidence 55666666666665 44555566666677777777766644 33333 457777777777777656666666
Q ss_pred CCcCcEEeCcCCcCCCcc-chhccCcCCCcEEECCCCcCCccCc---hhhhcCCCCCEEEccCCccccc
Q 038858 566 LTRIQTLNLSHNNLTGTI-LSTFTNLRHIESLDLYHNKLNGKIP---CQLVELNALVVFSVAYNNLSGK 630 (740)
Q Consensus 566 l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~l~~N~l~~~ 630 (740)
+++|+.|++++|.+++.. +..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+...
T Consensus 94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 778888888888887643 2677788888888888888875544 4677788888888888877643
No 128
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.60 E-value=2.8e-14 Score=150.99 Aligned_cols=128 Identities=11% Similarity=0.028 Sum_probs=62.5
Q ss_pred hhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcC
Q 038858 483 IDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQ 562 (740)
Q Consensus 483 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 562 (740)
|..+..++.+.+..+... .....|..+..++.+....+.+. ...|.. ..+|+.+.+..+ +..+...+
T Consensus 249 f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~--------~~~L~~i~l~~~-i~~I~~~a 315 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYG--------CSSLTEVKLLDS-VKFIGEEA 315 (394)
T ss_dssp TTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTT--------CTTCCEEEECTT-CCEECTTT
T ss_pred ccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccc--------cccccccccccc-cceechhh
Confidence 344444555554444322 33344444555555544433221 112222 235555555433 33344455
Q ss_pred ccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCC
Q 038858 563 IGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYN 625 (740)
Q Consensus 563 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 625 (740)
|.++++|+.++|.++ ++.....+|.++++|+.+++..+ ++......|.++++|+.+++..+
T Consensus 316 F~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 316 FESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred hcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 666666666666533 44444556666666666666554 44444555666666666665443
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=3.5e-16 Score=177.88 Aligned_cols=215 Identities=19% Similarity=0.159 Sum_probs=80.6
Q ss_pred CCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcc---------cCCCCCCCccCcceeeccCCcccCCCCcccc
Q 038858 377 LTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSG---------KIPQWLGNLTGLQYIIIPENHLEGPIPVAFC 447 (740)
Q Consensus 377 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~---------~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 447 (740)
.+.++.|++.+|.+... +.. .++.++|+.+.+.+ ..+..+..++.|+.|++++|.+. .++..+.
T Consensus 172 ~~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~ 244 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEA-NQA-----LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIF 244 (727)
T ss_dssp --------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGG
T ss_pred CCccceEEeeCCCCCcc-hhh-----HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhc
Confidence 35567777777776543 222 22333333333221 33455556666666666666665 3444444
Q ss_pred CCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCC
Q 038858 448 QLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLI 527 (740)
Q Consensus 448 ~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 527 (740)
.+++|++|+|++|.++ .+|..+..+++|+.|+|++|.++ .+|..++.+++|++|+|++|.++ .+
T Consensus 245 ~l~~L~~L~Ls~N~l~--------------~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~l 308 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLT--------------ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TL 308 (727)
T ss_dssp GCCSCSCCBCTTSCCS--------------CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CC
T ss_pred CCCCCCEEEeeCCcCc--------------ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-cc
Confidence 5666666666666655 44555666666666666666666 44556666666666666666665 33
Q ss_pred CCcccccccchhhhccccceEEccCccccccCCcCccCCCc-CcEEeCcCCcCCCccchhccCcCCCcEEECCCC-----
Q 038858 528 PPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTR-IQTLNLSHNNLTGTILSTFTNLRHIESLDLYHN----- 601 (740)
Q Consensus 528 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N----- 601 (740)
|..|.. +++|+.|+|++|.+++.+|..+..+.. +..|+|++|.+++.+|. .|+.|++++|
T Consensus 309 p~~~~~--------l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~ 374 (727)
T 4b8c_D 309 PWEFGN--------LCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQR 374 (727)
T ss_dssp CSSTTS--------CTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C--------------
T ss_pred Chhhhc--------CCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeeccccccc
Confidence 444444 456666666666666555555443321 22355666666655443 2344455554
Q ss_pred ---cCCccCchhhhcCCCCCEEEccCCccc
Q 038858 602 ---KLNGKIPCQLVELNALVVFSVAYNNLS 628 (740)
Q Consensus 602 ---~l~~~~~~~~~~l~~L~~L~l~~N~l~ 628 (740)
.+.+..+..+..+..+....+++|-+.
T Consensus 375 ~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 375 EYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ---------------------------CCC
T ss_pred ccCCccccccchhhcccccceeeeeccccc
Confidence 223233333344444555555555554
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=4e-16 Score=177.34 Aligned_cols=224 Identities=19% Similarity=0.176 Sum_probs=106.8
Q ss_pred CCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeEEccCCcccccCccccccCCCCCeEE
Q 038858 329 NFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLH 408 (740)
Q Consensus 329 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 408 (740)
+.++.|++.+|.+. ..+.. .++.++|+.+.+.+ +++..|.+. ..+..+..++.|+.|+
T Consensus 173 ~~~~~l~L~~n~~~-~~~~~------~l~~l~Ls~~~i~~--------------~~~~~n~~~-~~~~~~~~l~~L~~L~ 230 (727)
T 4b8c_D 173 PLTPKIELFANGKD-EANQA------LLQHKKLSQYSIDE--------------DDDIENRMV-MPKDSKYDDQLWHALD 230 (727)
T ss_dssp -----------------------------------------------------------------------CCCCCCEEE
T ss_pred CccceEEeeCCCCC-cchhh------HhhcCccCcccccC--------------cccccccee-cChhhhccCCCCcEEE
Confidence 45666777777665 33222 23445555544432 223333333 4456677778888888
Q ss_pred ccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhcccc
Q 038858 409 LNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLR 488 (740)
Q Consensus 409 l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~ 488 (740)
+++|.+. .++..+..+++|++|++++|.++ .+|..|..+++|+.|+|++|.++ .+|..+..+++
T Consensus 231 Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~--------------~lp~~~~~l~~ 294 (727)
T 4b8c_D 231 LSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT--------------SLPAELGSCFQ 294 (727)
T ss_dssp CTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS--------------SCCSSGGGGTT
T ss_pred CCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC--------------ccChhhcCCCC
Confidence 8888877 55655667888888888888887 66777888888888888888876 55666788888
Q ss_pred CcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCc
Q 038858 489 LSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTR 568 (740)
Q Consensus 489 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 568 (740)
|++|+|++|.++ .+|..++.+++|+.|+|++|.+++.+|..+.... .....+++++|.+++.+|. .
T Consensus 295 L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~-------~~~~~l~l~~N~l~~~~p~------~ 360 (727)
T 4b8c_D 295 LKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKS-------VTGLIFYLRDNRPEIPLPH------E 360 (727)
T ss_dssp CSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHH-------HHHHHHHHHHCCCCCCCCC------C
T ss_pred CCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcc-------hhhhHHhhccCcccCcCcc------c
Confidence 888888888887 5666788888888888888888877766654321 1223467888888877664 4
Q ss_pred CcEEeCcCC--------cCCCccchhccCcCCCcEEECCCCcCC
Q 038858 569 IQTLNLSHN--------NLTGTILSTFTNLRHIESLDLYHNKLN 604 (740)
Q Consensus 569 L~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 604 (740)
|+.|++++| .+.+..+..+..+..++...+++|-+.
T Consensus 361 l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 361 RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -----------------------------------------CCC
T ss_pred cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 556666666 344444455566667777778888775
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=3.1e-15 Score=134.62 Aligned_cols=127 Identities=19% Similarity=0.281 Sum_probs=78.1
Q ss_pred ccCcEEEccccccc-ccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccC
Q 038858 487 LRLSHLILAHNNLE-GEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGN 565 (740)
Q Consensus 487 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 565 (740)
++|+.|++++|.++ +..|..+..+++|+.|++++|.+++. ..+.. +++|+.|++++|.+++.+|..+..
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~--------l~~L~~L~Ls~n~i~~~~~~~~~~ 86 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK--------LNKLKKLELSDNRVSGGLEVLAEK 86 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCC--------CTTCCEEECCSSCCCSCTHHHHHH
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhc--------CCCCCEEECCCCcccchHHHHhhh
Confidence 56667777777666 45565666667777777777766544 23333 456666666666666555555555
Q ss_pred CCcCcEEeCcCCcCCCc-cchhccCcCCCcEEECCCCcCCccCc---hhhhcCCCCCEEEcc
Q 038858 566 LTRIQTLNLSHNNLTGT-ILSTFTNLRHIESLDLYHNKLNGKIP---CQLVELNALVVFSVA 623 (740)
Q Consensus 566 l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~l~ 623 (740)
+++|++|++++|.+++. .+..+..+++|++|++++|++++..+ ..+..+++|++|+++
T Consensus 87 l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 87 CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 66666666666666653 23556666666666666666664444 356666666666654
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=1.9e-14 Score=135.37 Aligned_cols=128 Identities=26% Similarity=0.295 Sum_probs=80.9
Q ss_pred cEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcC
Q 038858 490 SHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRI 569 (740)
Q Consensus 490 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 569 (740)
+.++++++.++ .+|..+. ++|+.|++++|.++ .+|..|.. +++|+.|++++|.+++..+..|..+++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~--------l~~L~~L~Ls~N~i~~i~~~~f~~l~~L 80 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSN--------YKHLTLIDLSNNRISTLSNQSFSNMTQL 80 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGG--------CTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhc--------ccCCCEEECCCCcCCEeCHhHccCCCCC
Confidence 34555555555 2332221 35666666666665 23334433 4566666666666666666667777777
Q ss_pred cEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccc
Q 038858 570 QTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSG 629 (740)
Q Consensus 570 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 629 (740)
++|+|++|++++..+..|..+++|++|+|++|+++...+..|..+++|+.|++++|++.+
T Consensus 81 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 777777777776666677777777777777777775555566677777777777777764
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=6.3e-15 Score=132.64 Aligned_cols=130 Identities=15% Similarity=0.150 Sum_probs=113.7
Q ss_pred CCCcccEEeCCCcccc-CCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhc
Q 038858 509 GLNQLQLLDLSDNKLH-GLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTF 587 (740)
Q Consensus 509 ~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 587 (740)
..++|+.|++++|.+. +..|..+.. +++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~--------l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 84 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDE--------FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLA 84 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTT--------CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHH
T ss_pred CCccCeEEEccCCcCChhHHHHHHhh--------cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHh
Confidence 3478999999999998 677776665 67999999999999966 788999999999999999998888889
Q ss_pred cCcCCCcEEECCCCcCCcc-CchhhhcCCCCCEEEccCCcccccCC---CCCccccCCCccccCC
Q 038858 588 TNLRHIESLDLYHNKLNGK-IPCQLVELNALVVFSVAYNNLSGKIP---EMTTQFATFNESNYKG 648 (740)
Q Consensus 588 ~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~~~~l~~~~~~~ 648 (740)
..+++|++|++++|++++. .+..+..+++|++|++++|++++..+ ..+..+++|+.+++++
T Consensus 85 ~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 85 EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999999999999864 44789999999999999999998776 4677888898887753
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=2e-14 Score=133.55 Aligned_cols=133 Identities=24% Similarity=0.283 Sum_probs=88.6
Q ss_pred CcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCc
Q 038858 489 LSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTR 568 (740)
Q Consensus 489 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 568 (740)
.+.++++++.++. +|..+ .++|+.|++++|.+.+..+..+.. +++|+.|++++|.+++..+..|..+++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~l~~ 77 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDK--------LTQLTKLSLSQNQIQSLPDGVFDKLTK 77 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTT--------CTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcC--------cccccEEECCCCcceEeChhHccCCCc
Confidence 3455666665553 22222 246666777776666555544444 456777777777776655566777777
Q ss_pred CcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCC
Q 038858 569 IQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIP 632 (740)
Q Consensus 569 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 632 (740)
|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++++..|
T Consensus 78 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 8888888877777666677777788888888887776555556777788888888887776544
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.57 E-value=9.7e-15 Score=134.26 Aligned_cols=109 Identities=24% Similarity=0.268 Sum_probs=71.8
Q ss_pred cceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccC
Q 038858 545 LSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAY 624 (740)
Q Consensus 545 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~ 624 (740)
.+.+++++|.++. +|..+. ++|+.|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3456666666653 443332 5666777777777766666677777777777777777655555566677777777777
Q ss_pred CcccccCCCCCccccCCCccccCCCCCCCCCC
Q 038858 625 NNLSGKIPEMTTQFATFNESNYKGNPFLCGLP 656 (740)
Q Consensus 625 N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~ 656 (740)
|++++..+..+..+++|+.+++++|||.|+|+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 77776666666667777777777777777774
No 136
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=8.9e-15 Score=134.65 Aligned_cols=134 Identities=18% Similarity=0.136 Sum_probs=117.1
Q ss_pred CCCcccEEeCCCcccc-CCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhc
Q 038858 509 GLNQLQLLDLSDNKLH-GLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTF 587 (740)
Q Consensus 509 ~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 587 (740)
..++|+.|++++|.+. +.+|..+.. +++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~--------l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 91 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAE--------FVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLA 91 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGG--------GGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHH
T ss_pred CcccCCEEECCCCCCChhhHHHHHHh--------CCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHH
Confidence 3478999999999998 566766655 67999999999999866 788999999999999999998888889
Q ss_pred cCcCCCcEEECCCCcCCccC-chhhhcCCCCCEEEccCCcccccCC---CCCccccCCCccccCCCCCC
Q 038858 588 TNLRHIESLDLYHNKLNGKI-PCQLVELNALVVFSVAYNNLSGKIP---EMTTQFATFNESNYKGNPFL 652 (740)
Q Consensus 588 ~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~~~~l~~~~~~~Np~~ 652 (740)
..+++|++|++++|++++.. +..+..+++|++|++++|++++..+ ..+..+++|+.+++.+|+..
T Consensus 92 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 92 EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 89999999999999998643 2788999999999999999998766 46788999999999988654
No 137
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.56 E-value=1.1e-13 Score=146.40 Aligned_cols=314 Identities=14% Similarity=0.083 Sum_probs=203.0
Q ss_pred CChhHhhcCCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCC
Q 038858 296 IPAEIGDILPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNF 375 (740)
Q Consensus 296 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 375 (740)
+....|..+.+|+.+.+.. .++.+...+|.++++|+.+++.++ ++ .++...|.++.+|+.+.+..+ +......+|.
T Consensus 62 Ig~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~ 137 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFK 137 (394)
T ss_dssp ECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred hHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeee
Confidence 3344444445555555542 244344455555555555555433 33 445555555555555554432 3333334444
Q ss_pred CCCCCCeEEccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEE
Q 038858 376 NLTKLSWLLLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQIL 455 (740)
Q Consensus 376 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 455 (740)
++..++...... .......+|..|++|+.+.+.++.. ......|.++.+|+.+.+..+ ++.+...+|.++..|+.+
T Consensus 138 ~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 138 GCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM 213 (394)
T ss_dssp TCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred cccccccccCcc--ccccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence 443322222222 2223345677788888888866533 255567777888888888765 444556677788888887
Q ss_pred eccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccc
Q 038858 456 GISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTA 535 (740)
Q Consensus 456 ~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 535 (740)
.+..+... +.+.+....+|+.+.+... ++......+.++..++.+.+..+... .....|..
T Consensus 214 ~~~~~~~~---------------i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~-- 274 (394)
T 4fs7_A 214 EFPNSLYY---------------LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYN-- 274 (394)
T ss_dssp CCCTTCCE---------------ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTT--
T ss_pred ecCCCceE---------------eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eecccccc--
Confidence 77655432 1222344567888888654 33356677889999999999877543 44555555
Q ss_pred cchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCC
Q 038858 536 LHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELN 615 (740)
Q Consensus 536 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 615 (740)
...++.+....+.+. ...|..+.+|+.+.+..+ ++.....+|.++++|+.+++..+ ++......|.++.
T Consensus 275 ------~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~ 343 (394)
T 4fs7_A 275 ------CSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCT 343 (394)
T ss_dssp ------CTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCT
T ss_pred ------ccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCC
Confidence 467888887766543 357889999999999865 66677889999999999999755 7667778899999
Q ss_pred CCCEEEccCCcccccCCCCCccccCCCccccCC
Q 038858 616 ALVVFSVAYNNLSGKIPEMTTQFATFNESNYKG 648 (740)
Q Consensus 616 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~ 648 (740)
+|+.+++..| ++.....+|..+.+|+.+.+..
T Consensus 344 ~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 344 SLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred CCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 9999999877 7777788888888888877644
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.53 E-value=3.2e-14 Score=131.20 Aligned_cols=108 Identities=20% Similarity=0.244 Sum_probs=65.3
Q ss_pred ceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCC
Q 038858 546 SGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYN 625 (740)
Q Consensus 546 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 625 (740)
+.+++++|++. .+|..+. ++|+.|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34555555554 3343332 55666666666666655666666666666666666666544444566666666666666
Q ss_pred cccccCCCCCccccCCCccccCCCCCCCCCC
Q 038858 626 NLSGKIPEMTTQFATFNESNYKGNPFLCGLP 656 (740)
Q Consensus 626 ~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~ 656 (740)
++++..+..+..+++|+.+++++|||.|+|+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 6666555555666666666666666666664
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=5.2e-14 Score=130.48 Aligned_cols=131 Identities=18% Similarity=0.159 Sum_probs=69.4
Q ss_pred cccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccC
Q 038858 486 LLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGN 565 (740)
Q Consensus 486 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 565 (740)
+.+|+.|++++|.++.. +......++|+.|++++|.+++. ..+.. +++|+.|++++|.+++..+..|..
T Consensus 18 ~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~--------l~~L~~L~Ls~N~l~~~~~~~~~~ 86 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPL--------LRRLKTLLVNNNRICRIGEGLDQA 86 (176)
T ss_dssp TTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCC--------CSSCCEEECCSSCCCEECSCHHHH
T ss_pred cCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--ccccc--------CCCCCEEECCCCcccccCcchhhc
Confidence 34444444444444422 22222222555555555555432 22222 345555555555555443344466
Q ss_pred CCcCcEEeCcCCcCCCccc-hhccCcCCCcEEECCCCcCCccCchh----hhcCCCCCEEEccCCccc
Q 038858 566 LTRIQTLNLSHNNLTGTIL-STFTNLRHIESLDLYHNKLNGKIPCQ----LVELNALVVFSVAYNNLS 628 (740)
Q Consensus 566 l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~l~~N~l~ 628 (740)
+++|++|++++|.++.... ..+..+++|+.|++++|+++ .+|.. +..+++|++||+++|...
T Consensus 87 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 87 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 6666677777666653221 25666677777777777766 33443 666677777777766654
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=6.8e-14 Score=129.69 Aligned_cols=134 Identities=19% Similarity=0.187 Sum_probs=111.7
Q ss_pred cccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccch
Q 038858 506 QLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILS 585 (740)
Q Consensus 506 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 585 (740)
.+..+++|+.|++++|.+... +. +... .++|+.|++++|.+++. ..+..+++|++|++++|.+++..+.
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~~-~~~~-------~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~ 82 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-EN-LGAT-------LDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEG 82 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CC-GGGG-------TTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSC
T ss_pred hcCCcCCceEEEeeCCCCchh-HH-hhhc-------CCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcc
Confidence 466788999999999999854 33 3221 34899999999999976 6789999999999999999987667
Q ss_pred hccCcCCCcEEECCCCcCCccCch--hhhcCCCCCEEEccCCcccccCCC---CCccccCCCccccCCCCC
Q 038858 586 TFTNLRHIESLDLYHNKLNGKIPC--QLVELNALVVFSVAYNNLSGKIPE---MTTQFATFNESNYKGNPF 651 (740)
Q Consensus 586 ~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~l~~N~l~~~~~~---~~~~~~~l~~~~~~~Np~ 651 (740)
.|..+++|++|++++|+++ .+|. .+..+++|+.|++++|+++...+. .+..++.++.+++++|+.
T Consensus 83 ~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 83 LDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred hhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 7799999999999999997 5565 788999999999999999854332 367889999999988753
No 141
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.44 E-value=6.1e-12 Score=132.98 Aligned_cols=131 Identities=13% Similarity=0.162 Sum_probs=66.8
Q ss_pred hhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCC
Q 038858 481 DRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIP 560 (740)
Q Consensus 481 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 560 (740)
.+|.++..|+.+.+.++... .....|.++++|+.+.+. +.+..+...+|.. +.+|+.+++..+ ++.+..
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~--------c~~L~~i~lp~~-v~~I~~ 327 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAG--------CISLKSIDIPEG-ITQILD 327 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTT--------CTTCCEEECCTT-CCEECT
T ss_pred ceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecC--------CCCcCEEEeCCc-ccEehH
Confidence 44566666666666554332 445556666666666664 2344344444444 345666666543 443444
Q ss_pred cCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCc
Q 038858 561 PQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNN 626 (740)
Q Consensus 561 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 626 (740)
.+|.++++|+.+.+..+ ++.....+|.++++|+.+++.++... ...+.....|+.+.+..|.
T Consensus 328 ~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 328 DAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC---------
T ss_pred hHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCC
Confidence 56666666666666533 44455566666666666666665432 1234445556655555443
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=3.6e-15 Score=141.32 Aligned_cols=160 Identities=21% Similarity=0.266 Sum_probs=102.3
Q ss_pred cCCCCccEEeccCCcCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCC
Q 038858 447 CQLDSLQILGISDNNISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGL 526 (740)
Q Consensus 447 ~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 526 (740)
.....++.++++.+.+.+..|. + ..+|..+..+++|++|++++|.+++ +| .+..+++|+.|++++|.+..
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~------l-~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~- 84 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPP------I-EKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK- 84 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTT------C-CCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-
T ss_pred HhcccccCcchheeEeccccCc------H-hhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-
Confidence 3344555566666655544332 0 1345567777778888887777775 44 66777777777777777763
Q ss_pred CCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccc-hhccCcCCCcEEECCCCcCCc
Q 038858 527 IPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTIL-STFTNLRHIESLDLYHNKLNG 605 (740)
Q Consensus 527 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~ 605 (740)
+|..+.. +++|+.|++++|.+++. | .+..+++|+.|++++|.+++..+ ..+..+++|++|++++|++.+
T Consensus 85 l~~~~~~--------~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 85 IENLDAV--------ADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp CSSHHHH--------HHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred ccchhhc--------CCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 3333322 45777777777777753 3 46677777777777777775433 467777777777777777765
Q ss_pred cCchh----------hhcCCCCCEEEccCCccc
Q 038858 606 KIPCQ----------LVELNALVVFSVAYNNLS 628 (740)
Q Consensus 606 ~~~~~----------~~~l~~L~~L~l~~N~l~ 628 (740)
.+|.. +..+++|+.|| +|+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 155 DYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 55432 66677777765 55554
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=2.2e-15 Score=142.85 Aligned_cols=155 Identities=19% Similarity=0.208 Sum_probs=127.0
Q ss_pred hhccccCcEEEcccccccccccc------cccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCcccc
Q 038858 483 IDGLLRLSHLILAHNNLEGEVPV------QLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLI 556 (740)
Q Consensus 483 ~~~l~~L~~L~L~~n~l~~~~~~------~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 556 (740)
+.....++.++++.+.+.+..|. .+..+++|++|++++|.+.+ +| .+.. +++|+.|++++|.+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~--------l~~L~~L~l~~n~l~ 83 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSG--------MENLRILSLGRNLIK 83 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHH--------HTTCCEEEEEEEEEC
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cccc--------CCCCCEEECCCCCcc
Confidence 45567788888888888777665 88999999999999999987 34 4444 789999999999999
Q ss_pred ccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCc-hhhhcCCCCCEEEccCCcccccCCCC-
Q 038858 557 GDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIP-CQLVELNALVVFSVAYNNLSGKIPEM- 634 (740)
Q Consensus 557 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~- 634 (740)
.+|..+..+++|++|++++|++++. + .+..+++|++|++++|++++..+ ..+..+++|++|++++|++++..|..
T Consensus 84 -~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~ 160 (198)
T 1ds9_A 84 -KIENLDAVADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENN 160 (198)
T ss_dssp -SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTT
T ss_pred -cccchhhcCCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccccc
Confidence 5677778889999999999999973 3 78999999999999999985433 57889999999999999998876652
Q ss_pred ---------CccccCCCccccCCCCCC
Q 038858 635 ---------TTQFATFNESNYKGNPFL 652 (740)
Q Consensus 635 ---------~~~~~~l~~~~~~~Np~~ 652 (740)
+..+++|+.++ +||..
T Consensus 161 ~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 161 ATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp THHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred chHHHHHHHHHhCCCcEEEC--CcccC
Confidence 45667777665 55543
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.42 E-value=1.6e-11 Score=129.68 Aligned_cols=145 Identities=8% Similarity=0.091 Sum_probs=100.3
Q ss_pred ccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCC
Q 038858 487 LRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNL 566 (740)
Q Consensus 487 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 566 (740)
..+..+.+.. .++.....+|.++..|+.+.+.++.. ......|.. ++.|+.+.+. +.+..+...+|.++
T Consensus 242 ~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~--------c~~L~~i~l~-~~i~~I~~~aF~~c 310 (394)
T 4gt6_A 242 REDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMN--------CPALQDIEFS-SRITELPESVFAGC 310 (394)
T ss_dssp CCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTT--------CTTCCEEECC-TTCCEECTTTTTTC
T ss_pred cccceEEcCC-cceEcccceeeecccccEEecccccc-eecCccccc--------ccccccccCC-CcccccCceeecCC
Confidence 3444555543 23445567788999999999976543 344555555 5689999996 45665667789999
Q ss_pred CcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCcccc
Q 038858 567 TRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNY 646 (740)
Q Consensus 567 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~ 646 (740)
++|+.++|..+ ++.....+|.++++|+.+.+..+ ++......|.++++|+.+++.++.... ..+.....|+.+.+
T Consensus 311 ~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i 385 (394)
T 4gt6_A 311 ISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPV 385 (394)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----
T ss_pred CCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEe
Confidence 99999999864 66666789999999999999755 665667889999999999999886542 22344455555544
Q ss_pred C
Q 038858 647 K 647 (740)
Q Consensus 647 ~ 647 (740)
.
T Consensus 386 ~ 386 (394)
T 4gt6_A 386 A 386 (394)
T ss_dssp -
T ss_pred C
Confidence 3
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.42 E-value=9.4e-13 Score=120.92 Aligned_cols=109 Identities=21% Similarity=0.220 Sum_probs=83.5
Q ss_pred ccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCC
Q 038858 513 LQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRH 592 (740)
Q Consensus 513 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 592 (740)
.+.+++++|.++. +|..+. +.|+.|++++|.+++..|..|..+++|++|+|++|++++..+..|..+++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~~----------~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~ 79 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGIP----------TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79 (170)
T ss_dssp TTEEECTTSCCSS-CCSCCC----------TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCEEEeCCCCcCc-cCccCC----------CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCC
Confidence 4667777777764 333331 46778888888888777778888888888888888888777777888888
Q ss_pred CcEEECCCCcCCccCchhhhcCCCCCEEEccCCcccccCC
Q 038858 593 IESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGKIP 632 (740)
Q Consensus 593 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 632 (740)
|++|+|++|++++..+..|..+++|++|++++|++++..+
T Consensus 80 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 80 LTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 8888888888887666678888888888888888876543
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=2.9e-12 Score=118.03 Aligned_cols=106 Identities=21% Similarity=0.261 Sum_probs=74.0
Q ss_pred cEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCC
Q 038858 514 QLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHI 593 (740)
Q Consensus 514 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 593 (740)
+.+++++|.+.. +|..+. +.|+.|++++|.+.+..|..|..+++|++|+|++|++++..+..|..+++|
T Consensus 15 ~~l~~~~n~l~~-iP~~~~----------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L 83 (174)
T 2r9u_A 15 TLVNCQNIRLAS-VPAGIP----------TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQL 83 (174)
T ss_dssp SEEECCSSCCSS-CCSCCC----------TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cEEEeCCCCCCc-cCCCcC----------CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchh
Confidence 556666666643 333322 367777777777776667777777777777887777777666667777788
Q ss_pred cEEECCCCcCCccCchhhhcCCCCCEEEccCCccccc
Q 038858 594 ESLDLYHNKLNGKIPCQLVELNALVVFSVAYNNLSGK 630 (740)
Q Consensus 594 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 630 (740)
++|+|++|++++..+..|..+++|++|++++|++...
T Consensus 84 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 84 TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred hEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 8888888877765555577777888888888877754
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.37 E-value=1.2e-12 Score=136.09 Aligned_cols=106 Identities=15% Similarity=0.229 Sum_probs=64.8
Q ss_pred EEccCc-cccccCCcCccCCCcCcEEeCcC-CcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccCC
Q 038858 548 IDLSCN-KLIGDIPPQIGNLTRIQTLNLSH-NNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAYN 625 (740)
Q Consensus 548 L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 625 (740)
++++++ .++ .+|. +..+++|+.|+|++ |.+++..+..|.++++|+.|+|++|+|++..|..|..+++|++|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455555 555 3454 66666666666664 6666655566666666666666666666666666666666666666666
Q ss_pred cccccCCCCCccccCCCccccCCCCCCCCCC
Q 038858 626 NLSGKIPEMTTQFATFNESNYKGNPFLCGLP 656 (740)
Q Consensus 626 ~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~ 656 (740)
+|++..+..+..+. |+.+++.+|+|.|+|+
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence 66655555544444 6666666666666664
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=1.7e-13 Score=142.61 Aligned_cols=44 Identities=25% Similarity=0.347 Sum_probs=20.3
Q ss_pred ccCCCcCcEEeCcCCcCCCcc----chhccCcCCCcEEECCCCcCCcc
Q 038858 563 IGNLTRIQTLNLSHNNLTGTI----LSTFTNLRHIESLDLYHNKLNGK 606 (740)
Q Consensus 563 ~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~ 606 (740)
+...++|++|+|++|.++... ..++...++|++|+|++|.++..
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 334445555555555554321 22233345555555555555433
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.22 E-value=4.1e-13 Score=139.74 Aligned_cols=168 Identities=20% Similarity=0.207 Sum_probs=122.2
Q ss_pred CCCCCEEeCCCCCCCCCCCCCc-cccC-CCCCCcEEECCCCCCcccchHHHHhcCCCCCEEEcCCCCCCCcCCCCCC---
Q 038858 4 FSSLNTLCLMDNNLTEIVTTTT-QELH-NFTNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCKVNGVVRSQGF--- 78 (740)
Q Consensus 4 l~~L~~L~Ls~n~i~~~~~~~~-~~l~-~l~~L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~l--- 78 (740)
.++|++|+|++|.++......+ ..+. ..++|++|+|++|.+.+.....+...+++|++|++++|.+.+... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~-~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEAC-KDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHH-HHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHH-HHHHHH
Confidence 3679999999999986532101 2233 337999999999999877666666657899999999999874321 112
Q ss_pred --CCCCCCCEEecCCCccccCcc----chHHHhccCCCCcEEEccCcccccCCCCCCccccCCCCCCCEEEccCCccccc
Q 038858 79 --PHFKSLEYLDMNTACIALNAS----FLQIIGASMPFLKYLSLSYFTFGTNSSRILDQGLCPLVHLQELHMANNDLRGS 152 (740)
Q Consensus 79 --~~l~~L~~L~L~~~~i~~~~~----~~~~l~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~ 152 (740)
...++|++|+|++|.+ ++. +...+.. +++|++|+|++|.+++.........+...++|++|+|++|.+++.
T Consensus 150 L~~~~~~L~~L~Ls~n~l--~~~~~~~l~~~L~~-~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPL--TAAGVAVLMEGLAG-NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp HHSTTCCCCEEECCSSCC--HHHHHHHHHHHHHT-CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred HHhcCCccceeeCCCCCC--ChHHHHHHHHHHhc-CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence 3468999999999954 332 3334455 899999999999887221111122567788999999999999753
Q ss_pred ----cCccccCCCCCCEEEccCCcCcc
Q 038858 153 ----LPWCLANMTSLRTLDVSSNQLTG 175 (740)
Q Consensus 153 ----~~~~l~~l~~L~~L~L~~n~l~~ 175 (740)
++..+...++|++|+|++|.+++
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 33445667999999999999874
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.19 E-value=2.7e-09 Score=112.04 Aligned_cols=131 Identities=10% Similarity=0.079 Sum_probs=75.5
Q ss_pred hhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCc
Q 038858 482 RIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPP 561 (740)
Q Consensus 482 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 561 (740)
.+..+.+|+.+.+..+ +.......+.++..|+.+.+..+ ++.+....|.. ...|+.+.+..+ +......
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~--------~~~l~~i~l~~~-i~~i~~~ 280 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQN--------CTALKTLNFYAK-VKTVPYL 280 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTT--------CTTCCEEEECCC-CSEECTT
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccce--------eehhcccccccc-ceecccc
Confidence 3445556666666543 23344455666666666666544 33333444443 345666666433 3334445
Q ss_pred CccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEccC
Q 038858 562 QIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVAY 624 (740)
Q Consensus 562 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~ 624 (740)
+|.++++|+.+.+.++.++.....+|.++++|+.+++..+ ++......|.++.+|+.+.+..
T Consensus 281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 6667777777777766666666667777777777777544 4444455666666776666643
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.18 E-value=2.8e-11 Score=125.62 Aligned_cols=102 Identities=25% Similarity=0.250 Sum_probs=52.0
Q ss_pred EEcccc-cccccccccccCCCcccEEeCCC-ccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcC
Q 038858 492 LILAHN-NLEGEVPVQLCGLNQLQLLDLSD-NKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRI 569 (740)
Q Consensus 492 L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 569 (740)
++++++ .+++ +|. +..+++|+.|+|++ |.+.+..+..|.. +++|+.|+|++|++++..|..|..+++|
T Consensus 13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~--------l~~L~~L~l~~N~l~~~~~~~~~~l~~L 82 (347)
T 2ifg_A 13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRG--------LGELRNLTIVKSGLRFVAPDAFHFTPRL 82 (347)
T ss_dssp EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCS--------CCCCSEEECCSSCCCEECTTGGGSCSCC
T ss_pred EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhcc--------ccCCCEEECCCCccceeCHHHhcCCcCC
Confidence 455555 5552 344 55555555555554 5555444444443 3455555555555555544455555555
Q ss_pred cEEeCcCCcCCCccchhccCcCCCcEEECCCCcCC
Q 038858 570 QTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLN 604 (740)
Q Consensus 570 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 604 (740)
+.|+|++|++++..+..|..++ |+.|+|.+|++.
T Consensus 83 ~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 83 SRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 5555555555544444444443 555555555554
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.14 E-value=3.3e-09 Score=111.44 Aligned_cols=298 Identities=10% Similarity=0.045 Sum_probs=180.9
Q ss_pred CCCCcEEEccCCcCcccCCccccCCCCCcEEEeecccCCCccChhhhhcCccCcEEEcCCccccccCCcCCCCCCCCCeE
Q 038858 304 LPSLSSFNISMNALDGSIPSSFGNMNFLQILDLSNNHLTGEIPEHLAIGCVNLEILVLSNNNLEGHMFSKNFNLTKLSWL 383 (740)
Q Consensus 304 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 383 (740)
..+|+.+.+.. .++.+...+|.+|.+|+.+.+..+ ++ .+....|.++ +|+.+.+..+ +..+...+|.. .+|+.+
T Consensus 45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i 118 (379)
T 4h09_A 45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDF 118 (379)
T ss_dssp GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEE
T ss_pred ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceecc-CCcccc
Confidence 45677777753 355556667777777777777543 54 5666666555 5666655432 33333334433 256666
Q ss_pred EccCCcccccCccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccCCcccCCCCccccCCCCccEEeccCCcCC
Q 038858 384 LLEDNHFVEEIPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPENHLEGPIPVAFCQLDSLQILGISDNNIS 463 (740)
Q Consensus 384 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 463 (740)
.+..+ +.......|..+ +++.+.+..+ ++......+..+..++...+..+.........+
T Consensus 119 ~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~----------------- 178 (379)
T 4h09_A 119 EFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYV----------------- 178 (379)
T ss_dssp ECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTE-----------------
T ss_pred cCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccce-----------------
Confidence 65543 222222333333 3444444332 222333344444455444443332210000000
Q ss_pred CCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccccccccCCCcccEEeCCCccccCCCCCcccccccchhhhcc
Q 038858 464 GSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEVPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLS 543 (740)
Q Consensus 464 ~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~ 543 (740)
..+. .......+.....+..+.+..... ......+..+.+|+.+.+..+ +.......|.. ..
T Consensus 179 -------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~--------~~ 240 (379)
T 4h09_A 179 -------LYNK-NKTILESYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYG--------MK 240 (379)
T ss_dssp -------EEET-TSSEEEECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTT--------CS
T ss_pred -------eccc-ccceecccccccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccC--------Cc
Confidence 0000 001122234455666666655433 245566778889999988754 33344455544 56
Q ss_pred ccceEEccCccccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCCccCchhhhcCCCCCEEEcc
Q 038858 544 LLSGIDLSCNKLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLNGKIPCQLVELNALVVFSVA 623 (740)
Q Consensus 544 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 623 (740)
.|+.+.+..+ ++.+...+|.++.+|+.+.+..+ ++.....+|.++++|+.+++.++.++...+..|.++.+|+.+++.
T Consensus 241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred cceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 8999999776 66566778999999999999754 665667899999999999999999987778889999999999997
Q ss_pred CCcccccCCCCCccccCCCccccCC
Q 038858 624 YNNLSGKIPEMTTQFATFNESNYKG 648 (740)
Q Consensus 624 ~N~l~~~~~~~~~~~~~l~~~~~~~ 648 (740)
.+ ++.....+|..+.+|+.+.+..
T Consensus 319 ~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 319 TA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred cc-ccEEHHHHhhCCCCCCEEEECC
Confidence 55 7767778888888898887644
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.86 E-value=1.1e-09 Score=112.70 Aligned_cols=34 Identities=24% Similarity=0.198 Sum_probs=18.5
Q ss_pred cccCcEEEccccccccccccccc--CCCcccEEeCC
Q 038858 486 LLRLSHLILAHNNLEGEVPVQLC--GLNQLQLLDLS 519 (740)
Q Consensus 486 l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~ 519 (740)
+++|+.|++..|.+.......+. .+|+|+.|+|+
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 45666666666655433332332 45666666664
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.72 E-value=2.8e-08 Score=102.21 Aligned_cols=162 Identities=13% Similarity=0.142 Sum_probs=88.6
Q ss_pred hcCCCCCCEEEccCCCCc---------ccCchHhhhcCCCCCEEeccCCcccCCCCCCCCCCCCcCEEeccCCcCcccCC
Q 038858 227 LHHQNKLEDVDLSHIKMN---------GEFPNWLLENNTKLESLSLVNDSLAGPFRLPIHSHKSLRLLDVSNNNFQGRIP 297 (740)
Q Consensus 227 l~~~~~L~~L~l~~~~~~---------~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 297 (740)
...+++|+.|.+...... +.+. .++..+|+|++|.++++.-... + .+ .+++|++|++..+.+.....
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l~l-~-~~-~~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNLSI-G-KK-PRPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTCBC-C-SC-BCTTCSEEEEECSBCCHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCcee-c-cc-cCCCCcEEEEecCCCChHHH
Confidence 445678888888654321 1122 3447788899999887731111 1 12 36888888888877664333
Q ss_pred hhHhh-cCCCCcEEEccCC--cCccc-----CCccc--cCCCCCcEEEeecccCCCccChhhhh--cCccCcEEEcCCcc
Q 038858 298 AEIGD-ILPSLSSFNISMN--ALDGS-----IPSSF--GNMNFLQILDLSNNHLTGEIPEHLAI--GCVNLEILVLSNNN 365 (740)
Q Consensus 298 ~~~~~-~~~~L~~L~l~~n--~~~~~-----~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~--~l~~L~~L~L~~n~ 365 (740)
..+.. .+|+|++|+|+.+ ...+. +...+ ..+++|++|++.+|.+.+..+..++. .+++|++|+++.|.
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 33332 4788888887532 11110 11122 24677777777777766433333321 24566666666665
Q ss_pred ccccCC----cCCCCCCCCCeEEccCCcccc
Q 038858 366 LEGHMF----SKNFNLTKLSWLLLEDNHFVE 392 (740)
Q Consensus 366 l~~~~~----~~~~~l~~L~~L~l~~n~~~~ 392 (740)
+.+... ..+..+++|+.|++++|.++.
T Consensus 291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 291 LTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp CBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 554221 111234555555555555543
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.46 E-value=3.4e-08 Score=91.60 Aligned_cols=119 Identities=12% Similarity=0.169 Sum_probs=63.7
Q ss_pred hhhccccCcEEEcccc-ccccc----ccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCcccc
Q 038858 482 RIDGLLRLSHLILAHN-NLEGE----VPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLI 556 (740)
Q Consensus 482 ~~~~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 556 (740)
.+...+.|++|+|++| .+... +...+...++|++|+|++|.+.......
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~-------------------------- 84 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFA-------------------------- 84 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHH--------------------------
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHH--------------------------
Confidence 3445566666666666 65432 2233444556666666666554221111
Q ss_pred ccCCcCccCCCcCcEEeCcCCcCCCc----cchhccCcCCCcEEEC--CCCcCCcc----CchhhhcCCCCCEEEccCCc
Q 038858 557 GDIPPQIGNLTRIQTLNLSHNNLTGT----ILSTFTNLRHIESLDL--YHNKLNGK----IPCQLVELNALVVFSVAYNN 626 (740)
Q Consensus 557 ~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L--s~N~l~~~----~~~~~~~l~~L~~L~l~~N~ 626 (740)
+...+...++|++|+|++|.|... +..++...++|++|+| ++|.++.. +...+...++|++|++++|.
T Consensus 85 --l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 85 --LAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp --HHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred --HHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 112233345566666666666542 2344555666777777 66666533 23344455667777777776
Q ss_pred cc
Q 038858 627 LS 628 (740)
Q Consensus 627 l~ 628 (740)
+.
T Consensus 163 i~ 164 (185)
T 1io0_A 163 QG 164 (185)
T ss_dssp HH
T ss_pred CC
Confidence 64
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.42 E-value=5.3e-08 Score=90.27 Aligned_cols=126 Identities=11% Similarity=0.078 Sum_probs=85.6
Q ss_pred CCccccCCCCccEEeccCC-cCCCCCCCCCCCCcCCccCchhhhccccCcEEEcccccccccc----cccccCCCcccEE
Q 038858 442 IPVAFCQLDSLQILGISDN-NISGSLPSYLSYNRLNGSIPDRIDGLLRLSHLILAHNNLEGEV----PVQLCGLNQLQLL 516 (740)
Q Consensus 442 ~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L 516 (740)
+...+...++|++|++++| .+...-. ..+...+...++|++|+|++|.+.... ...+...++|++|
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~---------~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L 98 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTL---------KACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSL 98 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHH---------HHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEE
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHH---------HHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEE
Confidence 3456778899999999999 8752100 023455667789999999999997533 3345556778888
Q ss_pred eCCCccccCCCCCcccccccchhhhccccceEEccCccccccCCcCccCCCcCcEEeC--cCCcCCCc----cchhccCc
Q 038858 517 DLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGDIPPQIGNLTRIQTLNL--SHNNLTGT----ILSTFTNL 590 (740)
Q Consensus 517 ~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L--~~n~l~~~----~~~~~~~l 590 (740)
+|++|.|.+.... .+...+...++|++|+| ++|.+... +...+...
T Consensus 99 ~L~~N~i~~~g~~----------------------------~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n 150 (185)
T 1io0_A 99 NVESNFISGSGIL----------------------------ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKN 150 (185)
T ss_dssp ECCSSCCCHHHHH----------------------------HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHC
T ss_pred ECcCCcCCHHHHH----------------------------HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhC
Confidence 8888877532111 12234555667888888 77887753 23455666
Q ss_pred CCCcEEECCCCcCC
Q 038858 591 RHIESLDLYHNKLN 604 (740)
Q Consensus 591 ~~L~~L~Ls~N~l~ 604 (740)
++|++|+|++|.+.
T Consensus 151 ~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 151 TTLLKFGYHFTQQG 164 (185)
T ss_dssp SSCCEEECCCSSHH
T ss_pred CCcCEEeccCCCCC
Confidence 88999999888875
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.28 E-value=6.9e-07 Score=76.80 Aligned_cols=61 Identities=18% Similarity=0.311 Sum_probs=46.4
Q ss_pred EEECCCCcCC-ccCchhhhcCCCCCEEEccCCcccccCCCCCccccCCCccccCCCCCCCCCCC
Q 038858 595 SLDLYHNKLN-GKIPCQLVELNALVVFSVAYNNLSGKIPEMTTQFATFNESNYKGNPFLCGLPL 657 (740)
Q Consensus 595 ~L~Ls~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~ 657 (740)
.++.+++.++ ..+|..+ .++|++|+|++|+|+...++.|..++.|+.+++.+|||.|+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l 73 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL 73 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence 6677777775 3445432 23688888888888887777788888888999999999999964
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.28 E-value=1.6e-07 Score=84.39 Aligned_cols=85 Identities=12% Similarity=0.186 Sum_probs=50.4
Q ss_pred CCCcEEECCCCCCcccchHHHHhcCCCCCEEEcCCCC-CCCcCCCCCCCCC----CCCCEEecCCCccccCccchHHHhc
Q 038858 32 TNLEYLTLDFSSLHISLLQSIASIFPSLKSLSMIDCK-VNGVVRSQGFPHF----KSLEYLDMNTACIALNASFLQIIGA 106 (740)
Q Consensus 32 ~~L~~L~Ls~~~~~~~~~~~l~~~l~~L~~L~l~~~~-~~~~~~~~~l~~l----~~L~~L~L~~~~i~~~~~~~~~l~~ 106 (740)
..|++||+++|.+++.....+.. +++|++|+|++|. +++. ....++.+ ++|++|+|++|. .+++.....+..
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~-~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~-~ITD~Gl~~L~~ 137 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEG-LQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCG-NVTDKGIIALHH 137 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTT-CSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCT-TCCHHHHHHGGG
T ss_pred ceEeEEeCcCCCccHHHHHHhcC-CCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCC-cCCHHHHHHHhc
Confidence 35667777777666665666655 6677777777764 3321 11113332 357777777764 355666666665
Q ss_pred cCCCCcEEEccCcc
Q 038858 107 SMPFLKYLSLSYFT 120 (740)
Q Consensus 107 ~l~~L~~L~Ls~~~ 120 (740)
+++|++|++++|.
T Consensus 138 -~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 138 -FRNLKYLFLSDLP 150 (176)
T ss_dssp -CTTCCEEEEESCT
T ss_pred -CCCCCEEECCCCC
Confidence 7777777777764
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.26 E-value=1.4e-07 Score=91.64 Aligned_cols=63 Identities=25% Similarity=0.350 Sum_probs=30.7
Q ss_pred ccccceEEccCcccccc--CCcCccCCCcCcEEeCcCCcCCCccchhccCcC--CCcEEECCCCcCCcc
Q 038858 542 LSLLSGIDLSCNKLIGD--IPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLR--HIESLDLYHNKLNGK 606 (740)
Q Consensus 542 l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~~ 606 (740)
++.|+.|+|++|.+++. +|..+..+++|+.|+|++|++++. ..+..+. +|++|+|++|++.+.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~ 235 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDT 235 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccc
Confidence 44555555555555542 223344555555555555555542 2222222 555555555555543
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.23 E-value=1.1e-06 Score=85.41 Aligned_cols=80 Identities=21% Similarity=0.317 Sum_probs=54.9
Q ss_pred cCCCcCcEEeCcCCcCCC--ccchhccCcCCCcEEECCCCcCCccCchhhhcCC--CCCEEEccCCcccccCCC------
Q 038858 564 GNLTRIQTLNLSHNNLTG--TILSTFTNLRHIESLDLYHNKLNGKIPCQLVELN--ALVVFSVAYNNLSGKIPE------ 633 (740)
Q Consensus 564 ~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--~L~~L~l~~N~l~~~~~~------ 633 (740)
..+++|+.|+|++|++++ .++..+..+++|+.|+|++|++++. ..+..+. +|++|++++|++++..|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 456788888888888887 3346667788888888888888754 2344444 788888888888775552
Q ss_pred -CCccccCCCccc
Q 038858 634 -MTTQFATFNESN 645 (740)
Q Consensus 634 -~~~~~~~l~~~~ 645 (740)
.+..+++|+.++
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 234456665554
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.03 E-value=1.2e-06 Score=78.78 Aligned_cols=86 Identities=7% Similarity=0.085 Sum_probs=56.2
Q ss_pred CCCCEEEcCCCCCCCcCCCCCCCCCCCCCEEecCCCccccCccchHHHhcc---CCCCcEEEccCcc-cccCCCCCCccc
Q 038858 57 PSLKSLSMIDCKVNGVVRSQGFPHFKSLEYLDMNTACIALNASFLQIIGAS---MPFLKYLSLSYFT-FGTNSSRILDQG 132 (740)
Q Consensus 57 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~l~~~---l~~L~~L~Ls~~~-~~~~~~~~~~~~ 132 (740)
.+|++||+++|.+++. ....+..+++|++|+|++|. .+++.....++.. +++|++|++++|. +++ .-.. .
T Consensus 61 ~~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C~-~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD---~Gl~-~ 134 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKCH-YIEDGCLERLSQLENLQKSMLEMEIISCGNVTD---KGII-A 134 (176)
T ss_dssp CCEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESCT-TCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH---HHHH-H
T ss_pred ceEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCCC-ccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH---HHHH-H
Confidence 3578888888876643 22336778888888888875 3566666666651 2468888888874 441 1111 4
Q ss_pred cCCCCCCCEEEccCCc
Q 038858 133 LCPLVHLQELHMANND 148 (740)
Q Consensus 133 l~~l~~L~~L~L~~n~ 148 (740)
+..+++|++|++++|.
T Consensus 135 L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLP 150 (176)
T ss_dssp GGGCTTCCEEEEESCT
T ss_pred HhcCCCCCEEECCCCC
Confidence 5667888888888875
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.41 E-value=4.1e-05 Score=70.08 Aligned_cols=65 Identities=17% Similarity=0.253 Sum_probs=37.7
Q ss_pred ccCCCcCcEEeCcCCcCCCc----cchhccCcCCCcEEECCCC---cCCc----cCchhhhcCCCCCEEEccCCcc
Q 038858 563 IGNLTRIQTLNLSHNNLTGT----ILSTFTNLRHIESLDLYHN---KLNG----KIPCQLVELNALVVFSVAYNNL 627 (740)
Q Consensus 563 ~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~N---~l~~----~~~~~~~~l~~L~~L~l~~N~l 627 (740)
+..-+.|++|+|++|.|... +.+++..-+.|++|+|++| .+.. .+.+.+...++|+.|+++.|.+
T Consensus 94 L~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 94 IETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 33445677777777766642 2244555666777777654 3332 2334455667777777776654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.20 E-value=0.00013 Score=66.87 Aligned_cols=116 Identities=8% Similarity=0.098 Sum_probs=72.9
Q ss_pred ccccCcEEEcccc-ccccc----ccccccCCCcccEEeCCCccccCCCCCcccccccchhhhccccceEEccCcccccc-
Q 038858 485 GLLRLSHLILAHN-NLEGE----VPVQLCGLNQLQLLDLSDNKLHGLIPPCFDNTALHERRVLSLLSGIDLSCNKLIGD- 558 (740)
Q Consensus 485 ~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~- 558 (740)
+-+.|++|+|++| .+... +...+..-+.|+.|+|++|.+.+.....+.. .++.-..|+.|+|++|.|...
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~----aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIE----LIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHH----HHHHCSSCCEEECCSSBCCHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHH----HHhcCCccCeEecCCCcCCHHH
Confidence 3456667777664 55421 2344555667777777777776433222221 334456788888888887642
Q ss_pred ---CCcCccCCCcCcEEeCcCCc---CCC----ccchhccCcCCCcEEECCCCcCC
Q 038858 559 ---IPPQIGNLTRIQTLNLSHNN---LTG----TILSTFTNLRHIESLDLYHNKLN 604 (740)
Q Consensus 559 ---~~~~~~~l~~L~~L~L~~n~---l~~----~~~~~~~~l~~L~~L~Ls~N~l~ 604 (740)
+.+++..-+.|++|+|++|. +.. .+...+..-++|+.|+++.|.+.
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 22455666779999998763 332 23456777899999999988764
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.71 E-value=0.003 Score=53.90 Aligned_cols=56 Identities=21% Similarity=0.214 Sum_probs=32.5
Q ss_pred eEEccCcccc-ccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCCCcCC
Q 038858 547 GIDLSCNKLI-GDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYHNKLN 604 (740)
Q Consensus 547 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 604 (740)
.++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555554 23333222 24666666666666666666666666666666666664
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=60.37 E-value=8.1 Score=30.49 Aligned_cols=46 Identities=17% Similarity=0.147 Sum_probs=28.7
Q ss_pred cccccCCcCccCCCcCcEEeCcCCcCCCccchhccCcCCCcEEECCC
Q 038858 554 KLIGDIPPQIGNLTRIQTLNLSHNNLTGTILSTFTNLRHIESLDLYH 600 (740)
Q Consensus 554 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 600 (740)
.++.+...+|.++++|+.+.|-.+ ++.+...+|.++.+|+.+.+.+
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344445566777777777777653 4445566677777777776654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=58.43 E-value=25 Score=27.64 Aligned_cols=41 Identities=10% Similarity=0.100 Sum_probs=19.9
Q ss_pred CccccccCCCCCeEEccCCcCcccCCCCCCCccCcceeeccC
Q 038858 394 IPQSLSKCLSLEGLHLNNNNLSGKIPQWLGNLTGLQYIIIPE 435 (740)
Q Consensus 394 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~ 435 (740)
...+|.+|.+|+.+.+-.+ ++.+....|.+|.+|+.+.+.+
T Consensus 12 ~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 12 DKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3344555555555555443 2223344555555555555543
Done!