BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038861
(1165 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii
Effector Xcv3220 (Xopl)
Length = 328
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 74/154 (48%), Gaps = 30/154 (19%)
Query: 940 LEQLEVRFCSNLAFLSRNGNLPQALKYLEVSYCSK----LESLAERLDNTSLEVI--AIS 993
L +L +R C L LP+ L + S + L+SL RL+ T + + +I+
Sbjct: 152 LRELSIRACPELT------ELPEPLASTDASGEHQGLVNLQSL--RLEWTGIRSLPASIA 203
Query: 994 YLENLKSL-----------PAGLHNLHHLQELKVYGCPNLESFPE--GGLPSTKLTKLTI 1040
L+NLKSL PA +H+L L+EL + GC L ++P GG L +L +
Sbjct: 204 NLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGCTALRNYPPIFGG--RAPLKRLIL 260
Query: 1041 GYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFP 1074
C NL LP +H LT L L++ C +L P
Sbjct: 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 73/166 (43%), Gaps = 19/166 (11%)
Query: 998 LKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLT 1057
L++LPA + +L+ L+EL + CP L PE L ST + G NL
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPE-PLASTDASGEHQGLV-----------NLQ 186
Query: 1058 SLLHLEIGWCRSLVSFPEDGFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCP 1117
S L LE RSL + + NL+SL++ + +S ++ L EL + G
Sbjct: 187 S-LRLEWTGIRSLPASIANL--QNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTA 241
Query: 1118 VLLSSPWF--PASLTVLHISYMPNLESLSLIVENLTSLEILILCKC 1161
+ P F A L L + NL +L L + LT LE L L C
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 26/177 (14%)
Query: 857 NALESLPEAWMQDSSTSLESLNIDGCDSLTYIARIQLPPSLRRLIISDCYNLRTLTGDQG 916
N L +LP + S L L+I C LT +LP L S + QG
Sbjct: 137 NPLRALPASIA--SLNRLRELSIRACPELT-----ELPEPLASTDASGEH--------QG 181
Query: 917 ICSSRSGRTSLTSFSSENELPAT------LEQLEVRFCSNLAFLSRNGNLPQALKYLEVS 970
+ + +S R T S LPA+ L+ L++R A +LP+ L+ L++
Sbjct: 182 LVNLQSLRLEWTGIRS---LPASIANLQNLKSLKIRNSPLSALGPAIHHLPK-LEELDLR 237
Query: 971 YCSKLESLAERLDNTS-LEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFP 1026
C+ L + + L+ + + NL +LP +H L L++L + GC NL P
Sbjct: 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%)
Query: 397 YCNIFNLPNEIGNLRHLRFLNLSGTNIQILPESINSLYNLHTILLEDCRRLKKLCNDMGN 456
+ I +LP I NL++L+ L + + + L +I+ L L + L C L+ G
Sbjct: 192 WTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251
Query: 457 LTKLHHLRNSNVHSLGEMPKGFGKLTCL 484
L L + +L +P +LT L
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQL 279
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 97/234 (41%), Gaps = 47/234 (20%)
Query: 111 DDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRVVAERV-GSVREYPL-GELSKEDCLR 168
DD+W+ W L KA S +I++TTR++ V + V G P+ L KE L
Sbjct: 249 DDVWDS----WVL-----KAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLE 299
Query: 169 VLTQH-SLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLGGLLRGKHDPKDWEIVL--- 224
+L+ ++ D L E I +CKG PL +G LLR P WE L
Sbjct: 300 ILSLFVNMKKAD------LPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQL 351
Query: 225 ---------NADVWDFADDGCDIIPALKVSYRFLPPQLKQCFAYCSLFPKDYEFEEEEII 275
+ +D+ + A+ +S L +K + S+ KD + + +
Sbjct: 352 QNKQFKRIRKSSSYDYE----ALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLC 407
Query: 276 LLWTAEGFLDQECDGRKMEELGREFVRELHSRSLFHQSSKDASRFVMHSLINDL 329
+LW E ++E++ +EFV + LF + + R+ +H L D
Sbjct: 408 ILWDME--------TEEVEDILQEFVNK---SLLFCDRNGKSFRYYLHDLQVDF 450
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 98/234 (41%), Gaps = 47/234 (20%)
Query: 111 DDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRVVAERV-GSVREYPL-GELSKEDCLR 168
DD+W+ W L KA S +I++TTR++ V + V G P+ L KE L
Sbjct: 243 DDVWDS----WVL-----KAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLE 293
Query: 169 VLTQH-SLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLGGLLRGKHDPKDWEIVL--- 224
+L+ ++ D L E I +CKG PL +G LLR P WE L
Sbjct: 294 ILSLFVNMKKAD------LPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQL 345
Query: 225 ---------NADVWDFADDGCDIIPALKVSYRFLPPQLKQCFAYCSLFPKDYEFEEEEII 275
+ +D+ + D A+ +S L +K + S+ KD + + +
Sbjct: 346 QNKQFKRIRKSSSYDY--EALD--EAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLC 401
Query: 276 LLWTAEGFLDQECDGRKMEELGREFVRELHSRSLFHQSSKDASRFVMHSLINDL 329
+LW E ++E++ +EFV + LF + + R+ +H L D
Sbjct: 402 ILWDME--------TEEVEDILQEFV---NKSLLFCDRNGKSFRYYLHDLQVDF 444
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein From
Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich Effector
Protein From Yersinia Pestis
Length = 454
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 115/443 (25%), Positives = 171/443 (38%), Gaps = 82/443 (18%)
Query: 652 TLYFANMQEWEEWIPFGSGQEVDEVFPKLRKLSLFSCSKLQGAXXXXXXXXXXXVIQSCK 711
T Y+ EWE P G+G++ + +LR C Q ++
Sbjct: 37 TEYYNAWSEWERNAPPGNGEQREMAVSRLR-----DCLDRQAHE-----------LELNN 80
Query: 712 QLLVTIQCLPALSELQIKGCKRVVLSSPMDLSSLKSVLLGEMANEVISGCPQLLSLVTED 771
L ++ LP E + C + P SLKS+L+ + +S P LL
Sbjct: 81 LGLSSLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEY---- 135
Query: 772 DLELSNCKGLTKLPQALLTLSSLRELRISGCASLVSFPQAALPSQLRTFKIEHCNALESL 831
L +SN + L KLP+ L SS ++ SL P LP L F N LE L
Sbjct: 136 -LGVSNNQ-LEKLPE--LQNSSFLKIIDVDNNSLKKLPD--LPPSLE-FIAAGNNQLEEL 188
Query: 832 PEAWMRNSNSSLQSLEIGTIEIEECNALESLPEAWMQDSSTSLESLNIDGCDSLTYIARI 891
PE LQ+L T + N+L+ LP D SLES+ + G + L + +
Sbjct: 189 PE---------LQNLPFLTAIYADNNSLKKLP-----DLPLSLESI-VAGNNILEELPEL 233
Query: 892 QLPPSLRRLIISDCYNLRTLTGDQGICSSRSGRTS-LTSFSSENELPATLEQLEV----- 945
Q P L I +D L+TL + + R + LT ELP +L L+V
Sbjct: 234 QNLPFLTT-IYADNNLLKTLPDLPPSLEALNVRDNYLTDLP---ELPQSLTFLDVSENIF 289
Query: 946 ----RFCSNLAFLSRNGN-------LPQALKYLEVSYCS--KLESLAERLDNTSLEVIAI 992
NL +L+ + N LP +L+ L VS +L +L RL+ + +
Sbjct: 290 SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERL---IASF 346
Query: 993 SYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNC 1052
++L + LP L LH +E P P + + +L +P
Sbjct: 347 NHLAEVPELPQNLKQLH------------VEYNPLREFPDIPESVEDLRMNSHLAEVPEL 394
Query: 1053 MHNLTSLLHLEIGWCRSLVSFPE 1075
NL LH+E R PE
Sbjct: 395 PQNLKQ-LHVETNPLREFPDIPE 416
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 84/207 (40%), Gaps = 42/207 (20%)
Query: 111 DDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRVVAERV-GSVREYPL-GELSKEDCLR 168
DD+W+ W L KA + +I++TTR++ V + V G P+ L +E L
Sbjct: 243 DDVWDP----WVL-----KAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLE 293
Query: 169 VLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLGGLLRGKHDPKDWEIVL---- 224
+L SL + L I +CKG PL +G LLR P W L
Sbjct: 294 IL---SLFVN--MKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDF--PNRWAYYLRQLQ 346
Query: 225 --------NADVWDFADDGCDIIPALKVSYRFLPPQLKQCFAYCSLFPKDYEFEEEEIIL 276
+ +D+ + A+ +S L +K + S+ KD + + + +
Sbjct: 347 NKQFKRIRKSSSYDYE----ALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCV 402
Query: 277 LWTAEGFLDQECDGRKMEELGREFVRE 303
LW E ++E++ +EFV +
Sbjct: 403 LWDLE--------TEEVEDILQEFVNK 421
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 114/223 (51%), Gaps = 25/223 (11%)
Query: 914 DQGICSSRSGRTSLTSFSSE-----NELPATLEQLEVRFCSNLAFLSRNGNLPQALKYLE 968
D G+CS + + S+ S + + +PA ++L+++ + S+ + L+ L
Sbjct: 8 DGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLY 67
Query: 969 VSYCSKLESLAERL--DNTSLEVIAISYLENLKSLPAGLHN-LHHLQELKVYGCPNLESF 1025
++ +KL++L + + +LE + ++ L++LP G+ + L +L EL++ L+S
Sbjct: 68 LND-NKLQTLPAGIFKELKNLETLWVTD-NKLQALPIGVFDQLVNLAELRL-DRNQLKSL 124
Query: 1026 PEGGLPS-TKLTKLTIGYCENLKALPNCMHN-LTSLLHLEIGWCRSLVSFPEDGFP--TN 1081
P S TKLT L++GY E L++LP + + LTSL L + + L PE F T
Sbjct: 125 PPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRL-YNNQLKRVPEGAFDKLTE 182
Query: 1082 LESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCPVLLSSPW 1124
L++L++ + ++ K + E + L+ LQ L +PW
Sbjct: 183 LKTLKLDNNQL-KRVPEGAFDSLEKLKMLQ-------LQENPW 217
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 33.1 bits (74), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 19/155 (12%)
Query: 973 SKLESLAERLDNTS--LEVIAISYLENLKSLPAGLHNLHHLQELK--------VYGCPNL 1022
++L S+ + + N S V I YL N++ L G + LH + LK + L
Sbjct: 38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQL 97
Query: 1023 ESFPEGGLPSTKLTKLT-IGYCEN-LKALPNCMHN-LTSLLHLEIGWCRSLVSFPEDGFP 1079
+S P G KLT L + EN L++LP+ + + LT+L +L + + L S P+ F
Sbjct: 98 QSLPNGVF--DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYL-YHNQLQSLPKGVFD 154
Query: 1080 --TNLESLEVHDLKISKPLFEWGLNKFSSLRELQI 1112
TNL L++ + ++ + L E +K + L++L +
Sbjct: 155 KLTNLTRLDLDNNQL-QSLPEGVFDKLTQLKQLSL 188
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 83/207 (40%), Gaps = 42/207 (20%)
Query: 111 DDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRVVAERV-GSVREYPL-GELSKEDCLR 168
DD+W+ W L KA + +I++TT ++ V + V G P+ L +E L
Sbjct: 250 DDVWDP----WVL-----KAFDNQCQILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLE 300
Query: 169 VLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLGGLLRGKHDPKDWEIVL---- 224
+L SL + L I +CKG PL +G LLR P W L
Sbjct: 301 IL---SLFVN--MKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDF--PNRWAYYLRQLQ 353
Query: 225 --------NADVWDFADDGCDIIPALKVSYRFLPPQLKQCFAYCSLFPKDYEFEEEEIIL 276
+ +D+ + A+ +S L +K + S+ KD + + + +
Sbjct: 354 NKQFKRIRKSSSYDYE----ALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCV 409
Query: 277 LWTAEGFLDQECDGRKMEELGREFVRE 303
LW E ++E++ +EFV +
Sbjct: 410 LWDLE--------TEEVEDILQEFVNK 428
>pdb|1R38|A Chain A, Crystal Structure Of H114a Mutant Of Candida Tenuis Xylose
Reductase
pdb|1R38|B Chain B, Crystal Structure Of H114a Mutant Of Candida Tenuis Xylose
Reductase
pdb|1R38|C Chain C, Crystal Structure Of H114a Mutant Of Candida Tenuis Xylose
Reductase
pdb|1R38|D Chain D, Crystal Structure Of H114a Mutant Of Candida Tenuis Xylose
Reductase
Length = 322
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 215 HDPKDWEIVLNADVWDFADDGCDI-IPALKVSYRFLPPQLKQCFAYCSLFPKDYEFEEEE 273
HDPK+ E LN + D D D+ + A ++++F+P + K + ++ +E+
Sbjct: 87 HDPKNVETALNKTLADLKVDYVDLFLIAFPIAFKFVPIEEKYPPGFYCGDGNNFVYEDVP 146
Query: 274 IILLWTA 280
I+ W A
Sbjct: 147 ILETWKA 153
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 19/155 (12%)
Query: 973 SKLESLAERLDNTS--LEVIAISYLENLKSLPAGLHNLHHLQELK--------VYGCPNL 1022
++L S+ + + N S V I YL N++ L G + LH + LK + L
Sbjct: 38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQL 97
Query: 1023 ESFPEGGLPSTKLTKLT-IGYCEN-LKALPNCMHN-LTSLLHLEIGWCRSLVSFPEDGFP 1079
+S P G KLT L + EN L++LP+ + + LT+L +L + L S P+ F
Sbjct: 98 QSLPNGVF--DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH-NQLQSLPKGVFD 154
Query: 1080 --TNLESLEVHDLKISKPLFEWGLNKFSSLRELQI 1112
TNL L++ ++ + L E +K + L++L++
Sbjct: 155 KLTNLTELDLSYNQL-QSLPEGVFDKLTQLKDLRL 188
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Query: 773 LELSNCK----GLTKLPQALLTLSSLRELRIS----GCASLVSFPQAALPSQ--LRTFKI 822
L L NC G LP L +L +LREL +S G A L + L Q L ++
Sbjct: 86 LSLQNCSLTEAGCGVLPSTLRSLPTLRELHLSDNPLGDAGLRLLCEGLLDPQCHLEKLQL 145
Query: 823 EHC--NALESLPEAWMRNSNSSLQSLEIGTIEIEECNALESLPEAWMQDSSTSLESLNID 880
E+C A P A + + +L+ L + +I E A + + DS+ LE+L ++
Sbjct: 146 EYCRLTAASCEPLASVLRATRALKELTVSNNDIGEAGA--RVLGQGLADSACQLETLRLE 203
Query: 881 GC 882
C
Sbjct: 204 NC 205
>pdb|2J3F|A Chain A, L-Ficolin Complexed To N-Acetyl-D-Galactosamine
pdb|2J3F|B Chain B, L-Ficolin Complexed To N-Acetyl-D-Galactosamine
pdb|2J3F|C Chain C, L-Ficolin Complexed To N-Acetyl-D-Galactosamine
pdb|2J3F|E Chain E, L-Ficolin Complexed To N-Acetyl-D-Galactosamine
pdb|2J3F|F Chain F, L-Ficolin Complexed To N-Acetyl-D-Galactosamine
pdb|2J3O|A Chain A, L-Ficolin Complexed To N-Acetyl-D-Glucosamine
pdb|2J3O|B Chain B, L-Ficolin Complexed To N-Acetyl-D-Glucosamine
pdb|2J3O|C Chain C, L-Ficolin Complexed To N-Acetyl-D-Glucosamine
pdb|2J3O|D Chain D, L-Ficolin Complexed To N-Acetyl-D-Glucosamine
pdb|2J3O|E Chain E, L-Ficolin Complexed To N-Acetyl-D-Glucosamine
pdb|2J3O|F Chain F, L-Ficolin Complexed To N-Acetyl-D-Glucosamine
Length = 219
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 8/104 (7%)
Query: 433 LYNLHTILLEDCRRLKKLCN---DMGNLTKLHHLRNSNV---HSLGEMPKGFGKLTCLLT 486
L HTI L DCR L LC+ D G T + +V +GFG
Sbjct: 21 LSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRVDGSVDFYRDWATYKQGFGSRLGEFW 80
Query: 487 LGRFVVGKVSGSGLRELKS-LTHLQETLRISKLENVKDVCDACE 529
LG + ++ G EL++ L ++ + +K + K V D E
Sbjct: 81 LGNDNIHALTAQGTSELRTDLVDFEDNYQFAKYRSFK-VADEAE 123
>pdb|2J0G|A Chain A, L-Ficolin Complexed To N-Acetyl-Mannosamine
pdb|2J0G|B Chain B, L-Ficolin Complexed To N-Acetyl-Mannosamine
pdb|2J0G|C Chain C, L-Ficolin Complexed To N-Acetyl-Mannosamine
pdb|2J0G|D Chain D, L-Ficolin Complexed To N-Acetyl-Mannosamine
pdb|2J0G|E Chain E, L-Ficolin Complexed To N-Acetyl-Mannosamine
pdb|2J0G|F Chain F, L-Ficolin Complexed To N-Acetyl-Mannosamine
pdb|2J0H|A Chain A, L-Ficolin Complexed To Acetyl-Choline
pdb|2J0H|B Chain B, L-Ficolin Complexed To Acetyl-Choline
pdb|2J0H|C Chain C, L-Ficolin Complexed To Acetyl-Choline
pdb|2J0H|D Chain D, L-Ficolin Complexed To Acetyl-Choline
pdb|2J0H|E Chain E, L-Ficolin Complexed To Acetyl-Choline
pdb|2J0H|F Chain F, L-Ficolin Complexed To Acetyl-Choline
pdb|2J0Y|A Chain A, L-ficolin Complexed To B-1,3-d-glucan
pdb|2J0Y|B Chain B, L-ficolin Complexed To B-1,3-d-glucan
pdb|2J0Y|C Chain C, L-ficolin Complexed To B-1,3-d-glucan
pdb|2J0Y|D Chain D, L-ficolin Complexed To B-1,3-d-glucan
pdb|2J0Y|E Chain E, L-ficolin Complexed To B-1,3-d-glucan
pdb|2J0Y|F Chain F, L-ficolin Complexed To B-1,3-d-glucan
pdb|2J1G|A Chain A, L-Ficolin Complexed To N-Acetyl-Cystein
pdb|2J1G|B Chain B, L-Ficolin Complexed To N-Acetyl-Cystein
pdb|2J1G|C Chain C, L-Ficolin Complexed To N-Acetyl-Cystein
pdb|2J1G|D Chain D, L-Ficolin Complexed To N-Acetyl-Cystein
pdb|2J1G|E Chain E, L-Ficolin Complexed To N-Acetyl-Cystein
pdb|2J1G|F Chain F, L-Ficolin Complexed To N-Acetyl-Cystein
pdb|2J2P|A Chain A, L-Ficolin Complexed To N-Acetyl-Cystein (150mm)
pdb|2J2P|B Chain B, L-Ficolin Complexed To N-Acetyl-Cystein (150mm)
pdb|2J2P|C Chain C, L-Ficolin Complexed To N-Acetyl-Cystein (150mm)
pdb|2J2P|D Chain D, L-Ficolin Complexed To N-Acetyl-Cystein (150mm)
pdb|2J2P|E Chain E, L-Ficolin Complexed To N-Acetyl-Cystein (150mm)
pdb|2J2P|F Chain F, L-Ficolin Complexed To N-Acetyl-Cystein (150mm)
pdb|2J3G|A Chain A, L-ficolin
pdb|2J3G|B Chain B, L-ficolin
pdb|2J3G|C Chain C, L-ficolin
pdb|2J3G|D Chain D, L-ficolin
pdb|2J3G|E Chain E, L-ficolin
pdb|2J3G|F Chain F, L-ficolin
pdb|2J3U|A Chain A, L-Ficolin Complexed To Galactose
pdb|2J3U|B Chain B, L-Ficolin Complexed To Galactose
pdb|2J3U|C Chain C, L-Ficolin Complexed To Galactose
pdb|2J3U|D Chain D, L-Ficolin Complexed To Galactose
pdb|2J3U|E Chain E, L-Ficolin Complexed To Galactose
pdb|2J3U|F Chain F, L-Ficolin Complexed To Galactose
pdb|2J61|B Chain B, L-ficolin Complexed To N-acetylglucosamine (forme C)
Length = 218
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 8/104 (7%)
Query: 433 LYNLHTILLEDCRRLKKLCN---DMGNLTKLHHLRNSNV---HSLGEMPKGFGKLTCLLT 486
L HTI L DCR L LC+ D G T + +V +GFG
Sbjct: 20 LSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRVDGSVDFYRDWATYKQGFGSRLGEFW 79
Query: 487 LGRFVVGKVSGSGLRELKS-LTHLQETLRISKLENVKDVCDACE 529
LG + ++ G EL++ L ++ + +K + K V D E
Sbjct: 80 LGNDNIHALTAQGTSELRTDLVDFEDNYQFAKYRSFK-VADEAE 122
>pdb|2J3F|D Chain D, L-Ficolin Complexed To N-Acetyl-D-Galactosamine
Length = 219
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 8/104 (7%)
Query: 433 LYNLHTILLEDCRRLKKLCN---DMGNLTKLHHLRNSNV---HSLGEMPKGFGKLTCLLT 486
L HTI L DCR L LC+ D G T + +V +GFG
Sbjct: 21 LSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRVDGSVDFYRDWATYKQGFGSRLGEFW 80
Query: 487 LGRFVVGKVSGSGLRELKS-LTHLQETLRISKLENVKDVCDACE 529
LG + ++ G EL++ L ++ + +K + K V D E
Sbjct: 81 LGNDNIHALTAQGTSELRTDLVDFEDNYQFAKYRSFK-VADEAE 123
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 27/87 (31%)
Query: 1006 HNLHHLQELKVYGCP--------------------------NLESFPEGGLPSTKLTKLT 1039
H LHHL L + G P +LESFP G L + K +
Sbjct: 72 HGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA 131
Query: 1040 IGYCENLKALPNCMHNLTSLLHLEIGW 1066
+ + K LP NLT+L+H+++ +
Sbjct: 132 HNFIHSCK-LPAYFSNLTNLVHVDLSY 157
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 27/87 (31%)
Query: 1006 HNLHHLQELKVYGCP--------------------------NLESFPEGGLPSTKLTKLT 1039
H LHHL L + G P +LESFP G L + K +
Sbjct: 77 HGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA 136
Query: 1040 IGYCENLKALPNCMHNLTSLLHLEIGW 1066
+ + K LP NLT+L+H+++ +
Sbjct: 137 HNFIHSCK-LPAYFSNLTNLVHVDLSY 162
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
Query: 404 PNEIGNLRHLRFLNLSGTNIQILPESI-NSLYNLHTILLE------DCRRL 447
P L +LR LN+SG + L ES+ +S+ NL T++L+ DCR L
Sbjct: 289 PYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLL 339
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 29.6 bits (65), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 35/185 (18%)
Query: 308 SLFHQSSKDASRFVMHSLINDLARWAAGEIYFRME-DTLKGENQKSFSKNLRHFSYILGE 366
++F QS K A+ F+ AG+ Y ++ D +K E + NL F I E
Sbjct: 557 AMFKQSGKIAANFI------------AGKRYVYIKNDGMKKECHGA--GNLLEFQGIRSE 602
Query: 367 YDGEKRLKSICD------GEHLR-------TFLPVKLVFS-LWGYCNIFNLPNEIGNLRH 412
++ C+ G H + + + + ++ L GY +P EIG++ +
Sbjct: 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY-----IPKEIGSMPY 657
Query: 413 LRFLNLSGTNIQ-ILPESINSLYNLHTILLEDCRRLKKLCNDMGNLTKLHHLRNSNVHSL 471
L LNL +I +P+ + L L+ + L + ++ M LT L + SN +
Sbjct: 658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717
Query: 472 GEMPK 476
G +P+
Sbjct: 718 GPIPE 722
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,470,389
Number of Sequences: 62578
Number of extensions: 1308442
Number of successful extensions: 3094
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 3047
Number of HSP's gapped (non-prelim): 67
length of query: 1165
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1056
effective length of database: 8,152,335
effective search space: 8608865760
effective search space used: 8608865760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)