Query 038861
Match_columns 1165
No_of_seqs 588 out of 4234
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 04:03:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038861.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038861hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.1E-68 4.5E-73 630.9 38.6 490 1-510 161-671 (889)
2 PLN03210 Resistant to P. syrin 100.0 6.2E-59 1.3E-63 587.3 49.6 685 1-912 187-910 (1153)
3 PLN00113 leucine-rich repeat r 100.0 2.6E-41 5.6E-46 431.2 25.1 525 391-1091 73-605 (968)
4 PLN00113 leucine-rich repeat r 100.0 1.2E-40 2.5E-45 425.2 25.8 527 411-1115 69-604 (968)
5 PF00931 NB-ARC: NB-ARC domain 100.0 2.4E-40 5.3E-45 359.1 12.5 278 3-287 1-285 (287)
6 KOG4194 Membrane glycoprotein 99.9 3.2E-29 7E-34 263.1 1.7 362 722-1138 79-450 (873)
7 KOG0472 Leucine-rich repeat pr 99.9 8.8E-32 1.9E-36 269.7 -17.3 93 392-487 50-142 (565)
8 KOG0472 Leucine-rich repeat pr 99.9 3.2E-29 6.9E-34 251.4 -11.7 177 391-639 72-248 (565)
9 KOG4194 Membrane glycoprotein 99.9 1.4E-26 3E-31 243.5 2.5 336 677-1113 101-447 (873)
10 KOG0618 Serine/threonine phosp 99.9 1.3E-27 2.8E-32 265.8 -5.5 291 764-1116 195-487 (1081)
11 KOG0618 Serine/threonine phosp 99.9 5.2E-27 1.1E-31 261.0 -2.7 457 391-1115 49-510 (1081)
12 PLN03210 Resistant to P. syrin 99.9 2.5E-22 5.5E-27 255.1 21.5 119 716-835 553-677 (1153)
13 KOG0444 Cytoskeletal regulator 99.9 5E-24 1.1E-28 225.6 -5.1 365 676-1144 5-379 (1255)
14 KOG0444 Cytoskeletal regulator 99.8 2.2E-23 4.7E-28 220.8 -5.5 362 392-889 12-379 (1255)
15 KOG4237 Extracellular matrix p 99.7 4.1E-19 8.9E-24 179.3 -0.9 93 392-487 51-145 (498)
16 PRK15387 E3 ubiquitin-protein 99.6 2.6E-15 5.7E-20 175.4 16.3 261 771-1147 204-465 (788)
17 PRK15387 E3 ubiquitin-protein 99.6 5.7E-15 1.2E-19 172.6 14.8 256 750-1096 205-461 (788)
18 KOG4237 Extracellular matrix p 99.5 2.4E-16 5.2E-21 159.5 -3.7 173 985-1161 274-498 (498)
19 PRK04841 transcriptional regul 99.5 6.4E-13 1.4E-17 169.8 24.5 275 24-334 31-332 (903)
20 PRK15370 E3 ubiquitin-protein 99.4 2.3E-13 5.1E-18 160.7 10.8 161 962-1139 262-427 (754)
21 PRK15370 E3 ubiquitin-protein 99.4 3.2E-13 6.9E-18 159.6 11.0 99 985-1093 325-428 (754)
22 COG2909 MalT ATP-dependent tra 99.4 9.5E-12 2.1E-16 140.4 18.9 289 9-336 26-340 (894)
23 KOG0617 Ras suppressor protein 99.4 1.4E-14 3.1E-19 128.8 -4.1 58 570-629 127-184 (264)
24 KOG0617 Ras suppressor protein 99.3 1.7E-14 3.8E-19 128.3 -5.2 165 962-1136 33-199 (264)
25 PRK00411 cdc6 cell division co 99.3 9.3E-11 2E-15 133.4 23.7 292 1-312 33-357 (394)
26 cd00116 LRR_RI Leucine-rich re 99.3 6.2E-13 1.3E-17 147.6 1.1 201 962-1162 81-318 (319)
27 TIGR02928 orc1/cdc6 family rep 99.2 1.9E-09 4.2E-14 121.3 25.0 298 1-313 18-350 (365)
28 TIGR03015 pepcterm_ATPase puta 99.2 1.1E-09 2.5E-14 117.3 21.2 181 26-211 44-242 (269)
29 PRK00080 ruvB Holliday junctio 99.1 2.4E-10 5.3E-15 125.0 12.2 274 1-314 28-311 (328)
30 PF01637 Arch_ATPase: Archaeal 99.1 1.4E-10 3E-15 122.2 9.6 194 1-206 2-233 (234)
31 cd00116 LRR_RI Leucine-rich re 99.1 2.2E-11 4.7E-16 135.2 2.0 201 962-1162 51-289 (319)
32 TIGR00635 ruvB Holliday juncti 99.1 7E-09 1.5E-13 113.3 19.6 272 1-313 7-289 (305)
33 COG3899 Predicted ATPase [Gene 99.0 3.4E-09 7.5E-14 128.6 17.5 310 1-333 3-385 (849)
34 PF05729 NACHT: NACHT domain 99.0 1.3E-09 2.9E-14 107.4 10.4 142 26-173 1-162 (166)
35 PTZ00112 origin recognition co 99.0 1.5E-08 3.3E-13 115.8 18.3 300 1-312 758-1085(1164)
36 KOG4658 Apoptotic ATPase [Sign 98.9 4.7E-10 1E-14 135.2 1.6 248 399-696 534-788 (889)
37 KOG1259 Nischarin, modulator o 98.8 1.3E-09 2.9E-14 106.8 0.1 105 1007-1118 282-387 (490)
38 PF14580 LRR_9: Leucine-rich r 98.8 2.9E-09 6.2E-14 101.6 2.1 124 985-1113 19-148 (175)
39 COG2256 MGS1 ATPase related to 98.7 1.7E-07 3.7E-12 97.5 14.3 151 24-201 47-206 (436)
40 KOG3207 Beta-tubulin folding c 98.7 2.4E-09 5.3E-14 111.3 -0.2 176 962-1137 146-336 (505)
41 KOG3207 Beta-tubulin folding c 98.7 3.3E-09 7.1E-14 110.3 0.7 158 962-1119 172-340 (505)
42 PRK06893 DNA replication initi 98.7 1E-07 2.2E-12 97.9 10.7 155 26-211 40-207 (229)
43 COG1474 CDC6 Cdc6-related prot 98.7 1.9E-06 4.1E-11 93.8 20.5 291 1-312 20-333 (366)
44 PLN03150 hypothetical protein; 98.6 3.4E-08 7.5E-13 117.3 7.3 107 987-1093 420-528 (623)
45 PF14580 LRR_9: Leucine-rich r 98.6 1.4E-08 3.1E-13 96.9 3.2 106 1005-1115 15-123 (175)
46 TIGR03420 DnaA_homol_Hda DnaA 98.6 2.6E-07 5.6E-12 96.1 12.9 171 4-211 23-205 (226)
47 PF13401 AAA_22: AAA domain; P 98.6 5.7E-08 1.2E-12 91.0 6.8 117 25-143 4-125 (131)
48 PRK14961 DNA polymerase III su 98.6 1.5E-06 3.2E-11 96.3 17.3 187 1-204 19-217 (363)
49 KOG1259 Nischarin, modulator o 98.6 1.5E-08 3.3E-13 99.6 1.1 128 962-1095 284-414 (490)
50 PF13855 LRR_8: Leucine rich r 98.5 8.1E-08 1.8E-12 74.9 4.4 59 1010-1068 2-60 (61)
51 PRK07003 DNA polymerase III su 98.5 2.9E-06 6.3E-11 97.4 18.1 191 1-207 19-221 (830)
52 PRK04195 replication factor C 98.5 4.2E-06 9E-11 96.8 19.9 244 1-286 17-271 (482)
53 PRK14960 DNA polymerase III su 98.5 1.6E-06 3.5E-11 98.4 15.9 188 1-204 18-216 (702)
54 PRK14949 DNA polymerase III su 98.5 1.8E-06 4E-11 101.2 16.1 189 1-207 19-221 (944)
55 KOG0532 Leucine-rich repeat (L 98.5 3E-09 6.5E-14 114.2 -6.1 167 964-1138 77-245 (722)
56 PRK05564 DNA polymerase III su 98.5 2.8E-06 6E-11 92.5 16.6 175 1-205 7-188 (313)
57 PLN03150 hypothetical protein; 98.5 1.3E-07 2.7E-12 112.5 6.5 105 1010-1115 419-525 (623)
58 KOG0532 Leucine-rich repeat (L 98.5 9.2E-09 2E-13 110.5 -2.7 86 399-487 109-194 (722)
59 PF13173 AAA_14: AAA domain 98.5 3.8E-07 8.2E-12 84.2 8.1 118 26-165 3-126 (128)
60 PRK12402 replication factor C 98.5 2.2E-06 4.8E-11 95.5 15.9 193 1-206 18-225 (337)
61 PF13855 LRR_8: Leucine rich r 98.5 1.5E-07 3.3E-12 73.4 4.6 61 985-1045 1-61 (61)
62 cd00009 AAA The AAA+ (ATPases 98.5 8.9E-07 1.9E-11 85.6 11.1 125 1-145 1-131 (151)
63 PRK13342 recombination factor 98.5 9.4E-07 2E-11 99.9 12.5 174 1-208 15-197 (413)
64 PF13191 AAA_16: AAA ATPase do 98.5 3.1E-07 6.8E-12 92.2 7.5 45 1-48 3-47 (185)
65 PLN03025 replication factor C 98.5 1.7E-06 3.8E-11 94.3 13.7 176 1-201 16-194 (319)
66 COG3903 Predicted ATPase [Gene 98.5 1.7E-07 3.6E-12 98.5 5.4 289 25-333 14-313 (414)
67 PRK14956 DNA polymerase III su 98.5 1.7E-06 3.8E-11 95.5 13.3 190 1-202 21-217 (484)
68 COG4886 Leucine-rich repeat (L 98.4 1.3E-07 2.8E-12 107.9 4.6 178 962-1144 116-294 (394)
69 PRK14963 DNA polymerase III su 98.4 7.3E-07 1.6E-11 101.6 9.7 191 1-204 17-214 (504)
70 PRK00440 rfc replication facto 98.4 4.9E-06 1.1E-10 92.0 16.2 177 1-204 20-200 (319)
71 COG4886 Leucine-rich repeat (L 98.4 1.2E-07 2.6E-12 108.2 3.4 148 963-1118 141-290 (394)
72 PRK14957 DNA polymerase III su 98.4 3.8E-06 8.3E-11 95.8 15.0 181 1-208 19-222 (546)
73 PRK12323 DNA polymerase III su 98.4 4.6E-06 9.9E-11 94.6 15.3 192 1-205 19-223 (700)
74 PRK06645 DNA polymerase III su 98.4 8.4E-06 1.8E-10 92.5 17.3 189 1-204 24-226 (507)
75 PF05496 RuvB_N: Holliday junc 98.4 2.9E-06 6.2E-11 82.6 11.5 179 1-212 27-226 (233)
76 TIGR00678 holB DNA polymerase 98.4 1.1E-05 2.5E-10 80.6 16.3 90 103-202 95-186 (188)
77 TIGR02397 dnaX_nterm DNA polym 98.4 9.6E-06 2.1E-10 91.1 17.4 182 1-208 17-219 (355)
78 PRK05896 DNA polymerase III su 98.4 6.1E-06 1.3E-10 94.0 15.5 192 1-208 19-222 (605)
79 PRK08691 DNA polymerase III su 98.3 6.8E-06 1.5E-10 94.5 15.3 189 1-205 19-218 (709)
80 PRK14962 DNA polymerase III su 98.3 5.9E-06 1.3E-10 93.4 14.6 179 1-210 17-222 (472)
81 PRK07471 DNA polymerase III su 98.3 2.9E-06 6.3E-11 92.7 11.3 191 1-207 22-238 (365)
82 PRK07940 DNA polymerase III su 98.3 1.3E-05 2.8E-10 88.4 16.2 175 1-205 8-211 (394)
83 PRK07994 DNA polymerase III su 98.3 8.3E-06 1.8E-10 94.5 14.9 189 1-207 19-221 (647)
84 PRK08903 DnaA regulatory inact 98.3 6.5E-06 1.4E-10 85.3 12.9 152 25-211 42-203 (227)
85 PTZ00202 tuzin; Provisional 98.3 2.1E-05 4.5E-10 84.0 16.2 159 1-173 265-433 (550)
86 PRK08727 hypothetical protein; 98.3 1.3E-05 2.8E-10 82.6 14.7 148 26-204 42-201 (233)
87 TIGR02903 spore_lon_C ATP-depe 98.3 7.9E-06 1.7E-10 96.3 14.8 200 1-210 157-398 (615)
88 PRK08084 DNA replication initi 98.3 1.2E-05 2.6E-10 83.0 14.4 155 26-211 46-213 (235)
89 PRK14964 DNA polymerase III su 98.3 1.6E-05 3.5E-10 89.3 16.2 173 1-203 16-213 (491)
90 PRK09087 hypothetical protein; 98.3 5.2E-06 1.1E-10 84.5 10.8 145 25-211 44-199 (226)
91 PRK15386 type III secretion pr 98.3 4.4E-06 9.6E-11 90.0 10.4 39 871-912 51-89 (426)
92 cd01128 rho_factor Transcripti 98.3 1.7E-06 3.8E-11 88.6 7.1 89 25-114 16-113 (249)
93 KOG2028 ATPase related to the 98.3 1E-05 2.2E-10 82.5 12.2 156 24-201 161-330 (554)
94 PRK09112 DNA polymerase III su 98.2 1.9E-05 4.1E-10 85.9 15.1 192 1-207 26-240 (351)
95 PF05621 TniB: Bacterial TniB 98.2 2.6E-05 5.7E-10 80.1 15.1 196 6-205 45-259 (302)
96 PRK14951 DNA polymerase III su 98.2 2.5E-05 5.4E-10 90.5 16.6 190 1-205 19-223 (618)
97 PRK14955 DNA polymerase III su 98.2 1.5E-05 3.2E-10 89.5 14.3 195 1-205 19-226 (397)
98 PRK14958 DNA polymerase III su 98.2 1.8E-05 3.8E-10 90.7 15.1 174 1-204 19-217 (509)
99 PRK15386 type III secretion pr 98.2 3.8E-06 8.2E-11 90.4 8.7 43 788-833 48-90 (426)
100 PRK09111 DNA polymerase III su 98.2 2.7E-05 5.8E-10 90.6 16.2 193 1-206 27-232 (598)
101 PRK07133 DNA polymerase III su 98.2 3.6E-05 7.8E-10 89.8 16.9 188 1-207 21-220 (725)
102 KOG4341 F-box protein containi 98.2 9.6E-08 2.1E-12 99.1 -3.7 296 769-1112 139-459 (483)
103 PRK14969 DNA polymerase III su 98.2 2.9E-05 6.3E-10 89.7 15.6 177 1-207 19-221 (527)
104 TIGR01242 26Sp45 26S proteasom 98.2 1.9E-05 4.2E-10 88.0 13.5 176 1-201 125-328 (364)
105 PRK13341 recombination factor 98.2 2.2E-05 4.7E-10 93.4 14.3 168 1-202 31-212 (725)
106 PF00308 Bac_DnaA: Bacterial d 98.1 2.7E-05 5.8E-10 79.1 13.1 166 25-210 34-211 (219)
107 PF14516 AAA_35: AAA-like doma 98.1 0.00025 5.5E-09 77.3 21.3 197 1-214 14-246 (331)
108 PRK09376 rho transcription ter 98.1 5.4E-06 1.2E-10 88.1 8.0 88 26-114 170-266 (416)
109 PRK05642 DNA replication initi 98.1 2.7E-05 5.9E-10 80.2 12.9 156 25-211 45-212 (234)
110 KOG1909 Ran GTPase-activating 98.1 3.7E-07 8.1E-12 92.8 -1.1 37 765-801 27-67 (382)
111 PRK14959 DNA polymerase III su 98.1 5.4E-05 1.2E-09 87.0 15.9 194 1-211 19-225 (624)
112 PRK14970 DNA polymerase III su 98.1 7.1E-05 1.5E-09 83.9 16.4 175 1-204 20-206 (367)
113 KOG2982 Uncharacterized conser 98.1 1.7E-06 3.8E-11 85.6 3.0 194 963-1157 46-285 (418)
114 PRK14953 DNA polymerase III su 98.1 0.00011 2.4E-09 83.8 17.8 176 1-207 19-220 (486)
115 PRK14954 DNA polymerase III su 98.1 5.9E-05 1.3E-09 87.8 15.9 193 1-202 19-223 (620)
116 KOG2227 Pre-initiation complex 98.1 6.9E-05 1.5E-09 80.0 14.7 196 1-201 153-362 (529)
117 PRK08451 DNA polymerase III su 98.1 0.00011 2.3E-09 83.7 17.1 190 1-206 17-217 (535)
118 PRK06305 DNA polymerase III su 98.1 6.5E-05 1.4E-09 85.1 15.6 178 1-207 20-223 (451)
119 PRK14952 DNA polymerase III su 98.1 0.00012 2.5E-09 84.8 17.3 192 1-209 16-222 (584)
120 PRK14950 DNA polymerase III su 98.0 0.00011 2.3E-09 86.9 17.3 192 1-208 19-222 (585)
121 KOG0989 Replication factor C, 98.0 3E-05 6.5E-10 78.0 9.9 185 2-207 40-231 (346)
122 PHA02544 44 clamp loader, smal 98.0 4.4E-05 9.6E-10 83.9 12.6 142 1-171 24-170 (316)
123 PRK14971 DNA polymerase III su 98.0 9.4E-05 2E-09 86.9 15.8 171 1-202 20-217 (614)
124 TIGR03345 VI_ClpV1 type VI sec 98.0 6.4E-05 1.4E-09 92.1 14.8 176 1-199 190-388 (852)
125 PRK14087 dnaA chromosomal repl 98.0 5.5E-05 1.2E-09 85.7 13.2 170 26-211 142-323 (450)
126 KOG2543 Origin recognition com 98.0 0.00023 5.1E-09 74.0 16.0 162 2-173 10-192 (438)
127 PRK07764 DNA polymerase III su 98.0 0.00012 2.7E-09 88.3 16.2 185 1-204 18-218 (824)
128 KOG1909 Ran GTPase-activating 98.0 2.2E-06 4.7E-11 87.4 1.0 14 962-975 30-43 (382)
129 COG3267 ExeA Type II secretory 98.0 0.00036 7.8E-09 68.9 16.1 180 24-210 50-248 (269)
130 TIGR02881 spore_V_K stage V sp 98.0 9.3E-05 2E-09 78.2 13.3 136 24-175 41-192 (261)
131 PRK06620 hypothetical protein; 98.0 5.8E-05 1.3E-09 76.2 11.1 137 26-206 45-188 (214)
132 PRK03992 proteasome-activating 97.9 7.4E-05 1.6E-09 83.5 12.8 175 1-200 134-336 (389)
133 KOG1859 Leucine-rich repeat pr 97.9 1.1E-07 2.4E-12 105.2 -9.3 125 963-1093 165-292 (1096)
134 PRK14948 DNA polymerase III su 97.9 8.9E-05 1.9E-09 87.1 13.8 192 1-206 19-221 (620)
135 KOG4341 F-box protein containi 97.9 6.3E-07 1.4E-11 93.2 -3.4 275 792-1114 138-435 (483)
136 TIGR02639 ClpA ATP-dependent C 97.9 6.2E-05 1.3E-09 91.7 13.0 154 1-174 185-358 (731)
137 PRK11331 5-methylcytosine-spec 97.9 3.4E-05 7.3E-10 84.4 9.4 107 1-119 178-287 (459)
138 PRK06647 DNA polymerase III su 97.9 0.00031 6.8E-09 81.5 18.0 189 1-205 19-218 (563)
139 TIGR00767 rho transcription te 97.9 1.9E-05 4.2E-10 84.6 7.5 90 25-115 168-266 (415)
140 CHL00181 cbbX CbbX; Provisiona 97.9 0.00034 7.3E-09 74.2 16.4 134 26-175 60-210 (287)
141 PRK07399 DNA polymerase III su 97.9 0.00049 1.1E-08 73.9 16.6 193 1-207 7-221 (314)
142 CHL00095 clpC Clp protease ATP 97.9 8.9E-05 1.9E-09 91.5 12.6 153 1-173 182-353 (821)
143 KOG0531 Protein phosphatase 1, 97.9 1.8E-06 3.8E-11 98.4 -2.1 166 962-1136 95-264 (414)
144 TIGR02880 cbbX_cfxQ probable R 97.8 0.00031 6.7E-09 74.7 14.9 132 27-174 60-208 (284)
145 PRK14965 DNA polymerase III su 97.8 0.00021 4.6E-09 83.9 14.6 190 1-207 19-221 (576)
146 PRK05707 DNA polymerase III su 97.8 0.00034 7.4E-09 75.5 14.9 96 104-207 106-203 (328)
147 PRK14088 dnaA chromosomal repl 97.8 0.00014 3.1E-09 82.3 12.6 160 26-206 131-304 (440)
148 KOG0531 Protein phosphatase 1, 97.8 2.2E-06 4.8E-11 97.6 -2.0 214 841-1116 72-288 (414)
149 PRK05563 DNA polymerase III su 97.8 0.00066 1.4E-08 79.3 18.2 187 1-204 19-217 (559)
150 TIGR00362 DnaA chromosomal rep 97.8 0.00025 5.4E-09 80.6 14.3 161 25-207 136-310 (405)
151 KOG1859 Leucine-rich repeat pr 97.8 3.9E-07 8.5E-12 101.0 -8.0 122 1010-1139 165-291 (1096)
152 KOG2120 SCF ubiquitin ligase, 97.8 4.4E-07 9.5E-12 89.7 -7.3 176 985-1162 185-374 (419)
153 PRK11034 clpA ATP-dependent Cl 97.8 0.00015 3.4E-09 86.7 12.1 152 1-173 189-361 (758)
154 TIGR03346 chaperone_ClpB ATP-d 97.7 0.00031 6.6E-09 87.1 14.7 152 1-174 176-349 (852)
155 KOG2120 SCF ubiquitin ligase, 97.7 5.2E-07 1.1E-11 89.2 -7.5 192 962-1154 185-390 (419)
156 COG2255 RuvB Holliday junction 97.7 0.00097 2.1E-08 66.7 13.9 185 1-204 29-220 (332)
157 PRK10865 protein disaggregatio 97.7 0.00056 1.2E-08 84.3 15.1 152 1-174 181-354 (857)
158 PRK12422 chromosomal replicati 97.7 0.00068 1.5E-08 76.6 14.6 153 26-200 142-306 (445)
159 PF05673 DUF815: Protein of un 97.6 0.00057 1.2E-08 68.0 11.9 120 1-147 30-154 (249)
160 PF00004 AAA: ATPase family as 97.6 6.3E-05 1.4E-09 70.5 5.1 21 28-48 1-21 (132)
161 PRK08769 DNA polymerase III su 97.6 0.0018 4E-08 69.1 16.4 95 103-207 112-208 (319)
162 PF12799 LRR_4: Leucine Rich r 97.6 4.3E-05 9.3E-10 54.0 2.8 35 411-445 1-35 (44)
163 PRK00149 dnaA chromosomal repl 97.6 0.00041 8.9E-09 79.8 12.1 160 25-206 148-321 (450)
164 PRK06871 DNA polymerase III su 97.6 0.0011 2.3E-08 71.0 14.0 173 7-202 11-198 (325)
165 TIGR02640 gas_vesic_GvpN gas v 97.6 0.0013 2.9E-08 69.3 14.7 41 27-72 23-63 (262)
166 KOG1644 U2-associated snRNP A' 97.6 0.00013 2.8E-09 68.7 5.9 102 1033-1136 42-149 (233)
167 PRK14086 dnaA chromosomal repl 97.6 0.00065 1.4E-08 77.9 12.7 159 26-206 315-487 (617)
168 TIGR00602 rad24 checkpoint pro 97.6 0.0004 8.6E-09 80.9 11.1 47 1-48 87-133 (637)
169 PRK08058 DNA polymerase III su 97.6 0.0015 3.2E-08 71.3 15.0 158 3-173 11-181 (329)
170 PTZ00361 26 proteosome regulat 97.5 0.00031 6.7E-09 78.4 9.0 175 2-201 187-389 (438)
171 KOG2982 Uncharacterized conser 97.5 2.6E-05 5.6E-10 77.5 0.4 63 837-904 67-130 (418)
172 PRK10536 hypothetical protein; 97.5 0.00052 1.1E-08 69.3 9.4 130 2-146 59-215 (262)
173 PTZ00454 26S protease regulato 97.5 0.0017 3.7E-08 72.1 14.5 175 2-201 149-351 (398)
174 smart00382 AAA ATPases associa 97.5 0.00045 9.7E-09 66.0 8.9 88 26-117 3-91 (148)
175 PF13177 DNA_pol3_delta2: DNA 97.4 0.0012 2.6E-08 63.5 11.1 136 2-161 1-161 (162)
176 COG0593 DnaA ATPase involved i 97.4 0.00073 1.6E-08 73.4 10.4 154 24-198 112-277 (408)
177 PRK07993 DNA polymerase III su 97.4 0.0017 3.7E-08 70.3 13.4 175 7-204 11-201 (334)
178 KOG0991 Replication factor C, 97.4 0.00086 1.9E-08 64.5 9.4 41 1-47 30-70 (333)
179 PRK06090 DNA polymerase III su 97.4 0.0055 1.2E-07 65.4 16.7 175 6-207 11-201 (319)
180 KOG0741 AAA+-type ATPase [Post 97.4 0.0036 7.9E-08 67.9 14.7 149 23-197 536-704 (744)
181 KOG1644 U2-associated snRNP A' 97.4 0.00029 6.2E-09 66.5 5.4 106 985-1092 42-152 (233)
182 TIGR03689 pup_AAA proteasome A 97.4 0.0025 5.5E-08 72.3 14.1 163 2-174 186-378 (512)
183 COG1222 RPT1 ATP-dependent 26S 97.3 0.0027 5.8E-08 65.9 12.6 184 2-211 155-371 (406)
184 CHL00176 ftsH cell division pr 97.3 0.0023 5.1E-08 75.4 13.9 150 25-199 216-386 (638)
185 PRK08116 hypothetical protein; 97.3 0.00073 1.6E-08 71.0 8.5 104 26-144 115-221 (268)
186 PRK08181 transposase; Validate 97.3 0.00082 1.8E-08 70.0 8.1 100 27-144 108-209 (269)
187 PF10443 RNA12: RNA12 protein; 97.2 0.0085 1.8E-07 65.0 15.6 202 3-217 1-288 (431)
188 PF12799 LRR_4: Leucine Rich r 97.2 0.00031 6.8E-09 49.6 3.3 35 1034-1069 2-36 (44)
189 KOG1514 Origin recognition com 97.2 0.014 3E-07 66.3 17.1 201 2-207 400-621 (767)
190 TIGR01241 FtsH_fam ATP-depende 97.2 0.0045 9.8E-08 72.2 14.2 158 25-207 88-267 (495)
191 COG1373 Predicted ATPase (AAA+ 97.1 0.0067 1.4E-07 67.9 14.0 147 27-206 39-191 (398)
192 PRK12377 putative replication 97.1 0.00084 1.8E-08 68.9 5.8 101 26-143 102-205 (248)
193 PRK04296 thymidine kinase; Pro 97.1 0.0011 2.5E-08 65.8 6.6 113 26-145 3-117 (190)
194 COG1223 Predicted ATPase (AAA+ 97.1 0.0073 1.6E-07 59.4 11.7 175 1-200 124-318 (368)
195 PRK08118 topology modulation p 97.1 0.00095 2.1E-08 64.6 5.9 34 27-60 3-37 (167)
196 PRK08939 primosomal protein Dn 97.1 0.0017 3.7E-08 69.4 8.3 101 25-143 156-260 (306)
197 PF02562 PhoH: PhoH-like prote 97.1 0.0012 2.6E-08 64.9 6.5 131 3-145 5-157 (205)
198 TIGR02639 ClpA ATP-dependent C 97.1 0.0059 1.3E-07 74.7 14.0 118 1-129 457-578 (731)
199 PF04665 Pox_A32: Poxvirus A32 97.0 0.0019 4E-08 65.2 7.9 35 27-63 15-49 (241)
200 PF01695 IstB_IS21: IstB-like 97.0 0.0004 8.7E-09 67.8 3.1 78 26-121 48-125 (178)
201 PRK07952 DNA replication prote 97.0 0.0024 5.1E-08 65.5 8.7 81 26-122 100-180 (244)
202 PRK12608 transcription termina 97.0 0.0031 6.8E-08 67.7 9.9 87 26-113 134-229 (380)
203 TIGR03346 chaperone_ClpB ATP-d 97.0 0.003 6.5E-08 78.5 11.3 135 1-143 568-717 (852)
204 PRK11889 flhF flagellar biosyn 97.0 0.0074 1.6E-07 64.9 12.3 91 23-115 239-331 (436)
205 cd00561 CobA_CobO_BtuR ATP:cor 97.0 0.0035 7.5E-08 58.9 8.7 117 26-145 3-139 (159)
206 TIGR03345 VI_ClpV1 type VI sec 97.0 0.0027 5.8E-08 78.2 10.0 134 1-143 569-718 (852)
207 PRK08699 DNA polymerase III su 97.0 0.0013 2.8E-08 71.0 6.5 70 104-173 113-184 (325)
208 PF07693 KAP_NTPase: KAP famil 96.9 0.019 4.1E-07 63.6 15.8 43 3-48 1-43 (325)
209 KOG3665 ZYG-1-like serine/thre 96.9 0.00016 3.4E-09 85.9 -0.9 148 962-1111 122-281 (699)
210 PRK06964 DNA polymerase III su 96.9 0.0061 1.3E-07 65.8 11.1 92 103-206 131-224 (342)
211 TIGR00763 lon ATP-dependent pr 96.9 0.0053 1.2E-07 75.5 12.1 48 1-48 323-370 (775)
212 PRK06526 transposase; Provisio 96.9 0.0013 2.9E-08 68.2 5.7 22 26-47 99-120 (254)
213 PRK09183 transposase/IS protei 96.9 0.0025 5.5E-08 66.6 7.8 22 26-47 103-124 (259)
214 PRK10787 DNA-binding ATP-depen 96.9 0.0021 4.5E-08 78.1 8.0 162 1-174 325-506 (784)
215 smart00763 AAA_PrkA PrkA AAA d 96.9 0.0011 2.3E-08 70.8 4.8 49 1-49 54-102 (361)
216 CHL00195 ycf46 Ycf46; Provisio 96.9 0.0082 1.8E-07 68.4 12.0 155 24-201 258-429 (489)
217 TIGR02902 spore_lonB ATP-depen 96.9 0.0046 1E-07 72.1 10.3 41 1-47 68-108 (531)
218 KOG4579 Leucine-rich repeat (L 96.9 9.5E-05 2.1E-09 64.7 -2.7 93 392-487 32-128 (177)
219 COG0542 clpA ATP-binding subun 96.9 0.0026 5.7E-08 74.6 8.0 122 1-130 494-619 (786)
220 COG0466 Lon ATP-dependent Lon 96.8 0.0027 5.9E-08 72.2 7.7 162 1-174 326-508 (782)
221 CHL00095 clpC Clp protease ATP 96.8 0.0046 1E-07 76.6 10.5 135 1-143 512-661 (821)
222 PRK10865 protein disaggregatio 96.8 0.0041 9E-08 76.8 9.9 120 1-128 571-694 (857)
223 KOG2035 Replication factor C, 96.8 0.0026 5.7E-08 63.2 6.4 194 2-207 17-229 (351)
224 TIGR02237 recomb_radB DNA repa 96.8 0.0055 1.2E-07 62.6 9.0 49 23-74 10-58 (209)
225 KOG2228 Origin recognition com 96.8 0.011 2.5E-07 60.7 10.7 169 1-174 27-219 (408)
226 KOG0733 Nuclear AAA ATPase (VC 96.8 0.023 5E-07 63.3 13.7 174 2-200 194-395 (802)
227 COG0470 HolB ATPase involved i 96.7 0.0065 1.4E-07 67.4 10.1 143 1-163 4-170 (325)
228 PRK07261 topology modulation p 96.7 0.0034 7.4E-08 61.2 6.7 65 27-114 2-67 (171)
229 PRK06921 hypothetical protein; 96.7 0.0041 8.9E-08 65.2 7.8 37 25-63 117-154 (266)
230 COG2607 Predicted ATPase (AAA+ 96.7 0.012 2.6E-07 57.6 10.0 116 1-143 63-182 (287)
231 PRK09361 radB DNA repair and r 96.7 0.0075 1.6E-07 62.3 9.6 47 23-72 21-67 (225)
232 PRK04132 replication factor C 96.7 0.021 4.5E-07 69.0 14.3 156 30-205 569-729 (846)
233 TIGR01243 CDC48 AAA family ATP 96.7 0.013 2.8E-07 72.1 13.1 177 1-202 181-382 (733)
234 COG2812 DnaX DNA polymerase II 96.7 0.0043 9.3E-08 69.9 8.1 182 1-201 19-214 (515)
235 KOG1969 DNA replication checkp 96.7 0.0041 8.8E-08 70.6 7.7 79 21-117 322-400 (877)
236 TIGR01243 CDC48 AAA family ATP 96.7 0.019 4.1E-07 70.6 14.3 152 25-201 487-657 (733)
237 PF07728 AAA_5: AAA domain (dy 96.7 0.00064 1.4E-08 64.1 1.2 84 28-124 2-85 (139)
238 PRK06696 uridine kinase; Valid 96.6 0.0026 5.6E-08 65.4 5.5 44 2-48 2-45 (223)
239 COG1484 DnaC DNA replication p 96.6 0.0063 1.4E-07 63.2 8.3 80 26-122 106-185 (254)
240 KOG0744 AAA+-type ATPase [Post 96.6 0.014 3.1E-07 59.5 10.0 79 25-113 177-259 (423)
241 PF00448 SRP54: SRP54-type pro 96.6 0.0054 1.2E-07 60.9 7.0 88 25-114 1-93 (196)
242 KOG4579 Leucine-rich repeat (L 96.6 0.00027 5.8E-09 62.0 -2.0 83 392-477 58-141 (177)
243 KOG0730 AAA+-type ATPase [Post 96.5 0.016 3.5E-07 65.5 10.9 154 23-201 466-637 (693)
244 cd01393 recA_like RecA is a b 96.5 0.017 3.6E-07 59.9 10.6 87 24-113 18-123 (226)
245 TIGR03499 FlhF flagellar biosy 96.5 0.015 3.3E-07 61.8 10.3 88 24-113 193-281 (282)
246 KOG0734 AAA+-type ATPase conta 96.5 0.014 2.9E-07 63.8 9.7 45 4-48 313-360 (752)
247 PRK06835 DNA replication prote 96.5 0.0027 5.8E-08 68.4 4.6 102 26-143 184-288 (329)
248 PF14532 Sigma54_activ_2: Sigm 96.5 0.0014 2.9E-08 61.5 1.9 108 1-144 1-110 (138)
249 PRK05541 adenylylsulfate kinas 96.5 0.0095 2.1E-07 58.8 8.1 36 24-61 6-41 (176)
250 PRK07132 DNA polymerase III su 96.5 0.11 2.4E-06 55.2 16.3 153 25-207 18-185 (299)
251 PF13207 AAA_17: AAA domain; P 96.5 0.0021 4.6E-08 58.8 3.1 21 27-47 1-21 (121)
252 cd00983 recA RecA is a bacter 96.5 0.0087 1.9E-07 63.7 8.0 84 23-113 53-142 (325)
253 PF00158 Sigma54_activat: Sigm 96.4 0.0063 1.4E-07 58.7 6.2 44 1-48 2-45 (168)
254 KOG0731 AAA+-type ATPase conta 96.4 0.033 7.3E-07 65.1 12.9 176 5-204 321-521 (774)
255 KOG2739 Leucine-rich acidic nu 96.4 0.0014 3.1E-08 65.1 1.6 103 1008-1112 42-150 (260)
256 PRK11034 clpA ATP-dependent Cl 96.4 0.0083 1.8E-07 72.3 8.4 117 1-128 461-581 (758)
257 PRK09354 recA recombinase A; P 96.4 0.012 2.5E-07 63.3 8.5 85 23-114 58-148 (349)
258 PRK12724 flagellar biosynthesi 96.4 0.01 2.3E-07 64.8 8.2 24 24-47 222-245 (432)
259 COG0542 clpA ATP-binding subun 96.4 0.012 2.5E-07 69.4 9.0 153 1-173 173-345 (786)
260 COG5238 RNA1 Ran GTPase-activa 96.4 0.0028 6E-08 62.7 3.3 152 962-1115 30-224 (388)
261 TIGR02012 tigrfam_recA protein 96.4 0.013 2.7E-07 62.5 8.5 85 23-114 53-143 (321)
262 cd01394 radB RadB. The archaea 96.3 0.017 3.7E-07 59.4 9.4 43 23-67 17-59 (218)
263 PHA02244 ATPase-like protein 96.3 0.019 4.1E-07 61.6 9.6 21 27-47 121-141 (383)
264 TIGR00708 cobA cob(I)alamin ad 96.3 0.027 5.8E-07 53.7 9.6 117 26-144 6-140 (173)
265 PRK12726 flagellar biosynthesi 96.3 0.039 8.5E-07 59.4 11.6 91 23-115 204-296 (407)
266 PRK12723 flagellar biosynthesi 96.3 0.036 7.8E-07 61.1 11.7 91 24-116 173-266 (388)
267 COG1618 Predicted nucleotide k 96.2 0.0034 7.4E-08 57.2 2.8 23 26-48 6-28 (179)
268 KOG1051 Chaperone HSP104 and r 96.2 0.036 7.9E-07 66.4 12.0 113 1-124 565-680 (898)
269 cd03214 ABC_Iron-Siderophores_ 96.2 0.036 7.7E-07 54.8 10.3 121 25-148 25-162 (180)
270 PRK06762 hypothetical protein; 96.2 0.057 1.2E-06 52.6 11.7 23 25-47 2-24 (166)
271 PF13604 AAA_30: AAA domain; P 96.2 0.0092 2E-07 59.6 6.1 110 26-147 19-134 (196)
272 TIGR01650 PD_CobS cobaltochela 96.2 0.051 1.1E-06 57.7 11.7 35 5-47 52-86 (327)
273 PRK00771 signal recognition pa 96.2 0.042 9.2E-07 61.6 11.8 89 23-114 93-185 (437)
274 KOG2004 Mitochondrial ATP-depe 96.2 0.0044 9.6E-08 70.1 4.0 103 1-115 414-516 (906)
275 PRK14974 cell division protein 96.2 0.031 6.7E-07 60.3 10.3 91 23-116 138-234 (336)
276 cd01133 F1-ATPase_beta F1 ATP 96.2 0.03 6.5E-07 57.9 9.7 86 26-113 70-172 (274)
277 PRK09270 nucleoside triphospha 96.1 0.025 5.5E-07 58.4 9.3 44 3-47 8-55 (229)
278 COG5238 RNA1 Ran GTPase-activa 96.1 0.00038 8.3E-09 68.5 -3.9 127 565-692 180-316 (388)
279 PRK14722 flhF flagellar biosyn 96.1 0.017 3.7E-07 62.9 8.0 90 24-115 136-226 (374)
280 COG1875 NYN ribonuclease and A 96.1 0.018 3.9E-07 60.1 7.7 131 3-145 229-389 (436)
281 cd01123 Rad51_DMC1_radA Rad51_ 96.1 0.036 7.8E-07 57.8 10.4 50 23-72 17-70 (235)
282 COG2884 FtsE Predicted ATPase 96.1 0.038 8.2E-07 52.2 8.8 61 91-151 142-204 (223)
283 KOG0728 26S proteasome regulat 96.1 0.11 2.3E-06 51.0 12.2 164 22-210 178-366 (404)
284 PRK05703 flhF flagellar biosyn 96.0 0.034 7.4E-07 62.6 10.4 88 25-114 221-309 (424)
285 PRK05439 pantothenate kinase; 96.0 0.041 8.8E-07 58.4 10.3 80 22-105 83-166 (311)
286 PRK13531 regulatory ATPase Rav 96.0 0.0074 1.6E-07 67.2 5.0 40 1-48 23-62 (498)
287 cd03228 ABCC_MRP_Like The MRP 96.0 0.032 6.9E-07 54.6 8.9 24 25-48 28-51 (171)
288 PRK12727 flagellar biosynthesi 96.0 0.031 6.8E-07 62.9 9.4 89 24-114 349-438 (559)
289 PLN00020 ribulose bisphosphate 96.0 0.01 2.3E-07 62.9 5.4 26 23-48 146-171 (413)
290 PRK08233 hypothetical protein; 96.0 0.02 4.3E-07 57.1 7.3 24 25-48 3-26 (182)
291 PRK06067 flagellar accessory p 95.9 0.025 5.5E-07 58.8 8.3 87 23-114 23-130 (234)
292 KOG0652 26S proteasome regulat 95.9 0.054 1.2E-06 53.4 9.6 46 2-47 175-227 (424)
293 KOG2739 Leucine-rich acidic nu 95.9 0.0048 1E-07 61.5 2.7 105 725-829 22-130 (260)
294 TIGR00959 ffh signal recogniti 95.9 0.04 8.7E-07 61.6 10.1 91 23-114 97-192 (428)
295 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.9 0.051 1.1E-06 51.2 9.5 105 26-149 27-132 (144)
296 PF00560 LRR_1: Leucine Rich R 95.9 0.0025 5.5E-08 37.1 0.4 21 412-432 1-21 (22)
297 PRK15455 PrkA family serine pr 95.9 0.0063 1.4E-07 68.5 3.7 47 1-47 79-125 (644)
298 PF01583 APS_kinase: Adenylyls 95.9 0.011 2.4E-07 55.3 4.7 36 25-62 2-37 (156)
299 cd01120 RecA-like_NTPases RecA 95.9 0.036 7.8E-07 54.1 8.8 39 27-67 1-39 (165)
300 cd03247 ABCC_cytochrome_bd The 95.9 0.044 9.6E-07 54.1 9.3 23 26-48 29-51 (178)
301 KOG0733 Nuclear AAA ATPase (VC 95.8 0.077 1.7E-06 59.3 11.4 131 25-175 545-693 (802)
302 KOG0743 AAA+-type ATPase [Post 95.8 0.16 3.4E-06 55.3 13.6 154 26-214 236-416 (457)
303 cd01122 GP4d_helicase GP4d_hel 95.8 0.063 1.4E-06 57.5 11.0 53 24-79 29-81 (271)
304 PRK05986 cob(I)alamin adenolsy 95.8 0.038 8.3E-07 53.5 8.1 118 25-144 22-158 (191)
305 cd03223 ABCD_peroxisomal_ALDP 95.8 0.073 1.6E-06 51.7 10.2 116 25-147 27-151 (166)
306 TIGR00064 ftsY signal recognit 95.8 0.038 8.3E-07 58.2 8.8 90 23-115 70-165 (272)
307 COG0468 RecA RecA/RadA recombi 95.7 0.046 1E-06 56.8 9.0 90 22-113 57-150 (279)
308 PRK10867 signal recognition pa 95.7 0.031 6.8E-07 62.5 8.3 89 23-114 98-193 (433)
309 COG0572 Udk Uridine kinase [Nu 95.7 0.025 5.4E-07 55.7 6.6 25 23-47 6-30 (218)
310 PRK07667 uridine kinase; Provi 95.7 0.023 4.9E-07 56.8 6.6 37 7-47 3-39 (193)
311 cd03115 SRP The signal recogni 95.7 0.043 9.3E-07 54.0 8.4 87 27-115 2-93 (173)
312 KOG3665 ZYG-1-like serine/thre 95.7 0.0044 9.5E-08 73.9 1.6 126 1033-1161 122-260 (699)
313 PF07724 AAA_2: AAA domain (Cd 95.7 0.0047 1E-07 59.8 1.5 42 25-68 3-45 (171)
314 KOG3347 Predicted nucleotide k 95.7 0.025 5.5E-07 50.7 5.8 71 27-107 9-79 (176)
315 cd01131 PilT Pilus retraction 95.7 0.018 4E-07 57.7 5.8 110 27-147 3-112 (198)
316 KOG0735 AAA+-type ATPase [Post 95.7 0.022 4.9E-07 64.5 6.7 72 25-114 431-504 (952)
317 TIGR02238 recomb_DMC1 meiotic 95.7 0.031 6.6E-07 60.1 7.7 58 23-81 94-155 (313)
318 COG1121 ZnuC ABC-type Mn/Zn tr 95.6 0.038 8.3E-07 56.0 7.8 52 96-149 149-204 (254)
319 cd03216 ABC_Carb_Monos_I This 95.6 0.036 7.8E-07 53.6 7.5 116 26-148 27-146 (163)
320 cd03238 ABC_UvrA The excision 95.6 0.047 1E-06 53.1 8.1 22 25-46 21-42 (176)
321 TIGR00554 panK_bact pantothena 95.6 0.059 1.3E-06 56.8 9.3 24 23-46 60-83 (290)
322 COG0464 SpoVK ATPases of the A 95.6 0.1 2.2E-06 61.3 12.5 133 23-175 274-424 (494)
323 COG1102 Cmk Cytidylate kinase 95.6 0.018 3.9E-07 52.7 4.7 43 27-82 2-44 (179)
324 PF00154 RecA: recA bacterial 95.6 0.044 9.6E-07 58.2 8.3 84 23-113 51-140 (322)
325 KOG0735 AAA+-type ATPase [Post 95.6 0.14 3E-06 58.5 12.3 151 27-202 703-871 (952)
326 cd03246 ABCC_Protease_Secretio 95.5 0.052 1.1E-06 53.2 8.4 22 26-47 29-50 (173)
327 PRK11608 pspF phage shock prot 95.5 0.029 6.2E-07 61.3 7.1 43 1-47 9-51 (326)
328 PRK00889 adenylylsulfate kinas 95.5 0.061 1.3E-06 53.0 8.7 24 25-48 4-27 (175)
329 PF00485 PRK: Phosphoribulokin 95.5 0.054 1.2E-06 54.3 8.4 21 27-47 1-21 (194)
330 TIGR03877 thermo_KaiC_1 KaiC d 95.5 0.1 2.2E-06 54.2 10.6 49 23-75 19-67 (237)
331 TIGR02974 phageshock_pspF psp 95.5 0.038 8.2E-07 60.2 7.7 43 1-47 2-44 (329)
332 cd02025 PanK Pantothenate kina 95.5 0.045 9.8E-07 55.7 7.8 21 27-47 1-21 (220)
333 cd02027 APSK Adenosine 5'-phos 95.5 0.082 1.8E-06 50.1 9.0 21 27-47 1-21 (149)
334 COG4608 AppF ABC-type oligopep 95.5 0.054 1.2E-06 55.0 8.0 122 25-150 39-176 (268)
335 PRK13695 putative NTPase; Prov 95.5 0.0098 2.1E-07 58.5 2.8 21 28-48 3-23 (174)
336 PF03308 ArgK: ArgK protein; 95.4 0.019 4E-07 57.8 4.6 39 6-48 14-52 (266)
337 cd03222 ABC_RNaseL_inhibitor T 95.4 0.067 1.5E-06 52.1 8.4 22 26-47 26-47 (177)
338 PF13238 AAA_18: AAA domain; P 95.4 0.011 2.4E-07 54.9 2.9 21 28-48 1-21 (129)
339 PRK08533 flagellar accessory p 95.4 0.074 1.6E-06 54.7 9.1 49 24-76 23-71 (230)
340 PRK06547 hypothetical protein; 95.3 0.023 5E-07 55.1 4.9 26 23-48 13-38 (172)
341 cd02019 NK Nucleoside/nucleoti 95.3 0.013 2.7E-07 46.8 2.6 22 27-48 1-22 (69)
342 KOG0729 26S proteasome regulat 95.3 0.14 3E-06 50.7 9.9 47 2-48 181-234 (435)
343 cd03230 ABC_DR_subfamily_A Thi 95.3 0.051 1.1E-06 53.3 7.2 118 26-149 27-160 (173)
344 TIGR00150 HI0065_YjeE ATPase, 95.2 0.031 6.8E-07 50.8 4.9 41 4-48 5-45 (133)
345 PTZ00301 uridine kinase; Provi 95.1 0.028 6.1E-07 56.4 5.0 23 25-47 3-25 (210)
346 PF00910 RNA_helicase: RNA hel 95.1 0.013 2.8E-07 51.9 2.3 21 28-48 1-21 (107)
347 COG0541 Ffh Signal recognition 95.1 0.25 5.4E-06 53.6 12.2 73 8-83 80-157 (451)
348 PF08423 Rad51: Rad51; InterP 95.1 0.085 1.8E-06 55.1 8.7 56 24-80 37-96 (256)
349 PF07726 AAA_3: ATPase family 95.1 0.011 2.4E-07 52.5 1.8 27 28-56 2-28 (131)
350 COG0563 Adk Adenylate kinase a 95.1 0.03 6.5E-07 54.5 4.9 22 27-48 2-23 (178)
351 KOG0739 AAA+-type ATPase [Post 95.1 0.28 6.1E-06 49.8 11.5 151 24-200 165-334 (439)
352 COG4088 Predicted nucleotide k 95.1 0.042 9.2E-07 52.4 5.5 23 26-48 2-24 (261)
353 PRK10733 hflB ATP-dependent me 95.1 0.13 2.7E-06 61.9 11.1 130 26-175 186-336 (644)
354 TIGR01817 nifA Nif-specific re 95.1 0.088 1.9E-06 62.4 9.8 44 1-48 199-242 (534)
355 PLN03186 DNA repair protein RA 95.1 0.12 2.6E-06 56.1 9.9 58 23-81 121-182 (342)
356 CHL00206 ycf2 Ycf2; Provisiona 95.1 0.079 1.7E-06 68.0 9.4 25 24-48 1629-1653(2281)
357 KOG0736 Peroxisome assembly fa 95.1 0.24 5.1E-06 57.4 12.3 69 27-115 707-775 (953)
358 PRK14723 flhF flagellar biosyn 95.1 0.15 3.2E-06 60.8 11.3 88 25-114 185-273 (767)
359 KOG1947 Leucine rich repeat pr 95.0 0.0023 4.9E-08 75.9 -3.7 218 939-1164 189-440 (482)
360 PRK07276 DNA polymerase III su 95.0 0.72 1.6E-05 48.7 15.2 69 103-172 103-173 (290)
361 PF13671 AAA_33: AAA domain; P 95.0 0.018 3.9E-07 54.6 3.1 21 27-47 1-21 (143)
362 TIGR02236 recomb_radA DNA repa 95.0 0.096 2.1E-06 57.1 9.2 56 24-80 94-153 (310)
363 TIGR03878 thermo_KaiC_2 KaiC d 95.0 0.08 1.7E-06 55.6 8.2 41 23-65 34-74 (259)
364 COG0465 HflB ATP-dependent Zn 95.0 0.23 5E-06 57.2 12.1 94 2-115 154-253 (596)
365 PLN03187 meiotic recombination 95.0 0.14 3E-06 55.6 9.9 58 23-81 124-185 (344)
366 cd03281 ABC_MSH5_euk MutS5 hom 95.0 0.041 8.9E-07 55.7 5.7 22 25-46 29-50 (213)
367 COG1419 FlhF Flagellar GTP-bin 95.0 0.14 3.1E-06 55.4 9.8 89 25-115 203-292 (407)
368 COG0529 CysC Adenylylsulfate k 95.0 0.053 1.1E-06 50.6 5.7 24 24-47 22-45 (197)
369 PTZ00494 tuzin-like protein; P 94.9 0.52 1.1E-05 51.1 13.7 161 1-173 374-543 (664)
370 PRK15429 formate hydrogenlyase 94.9 0.081 1.8E-06 64.7 9.2 131 1-144 379-521 (686)
371 PRK06731 flhF flagellar biosyn 94.9 0.19 4.2E-06 52.5 10.6 90 24-116 74-166 (270)
372 cd03229 ABC_Class3 This class 94.9 0.059 1.3E-06 53.2 6.6 22 26-47 27-48 (178)
373 cd01121 Sms Sms (bacterial rad 94.9 0.17 3.6E-06 55.9 10.5 82 24-113 81-167 (372)
374 PF13306 LRR_5: Leucine rich r 94.9 0.11 2.5E-06 48.0 8.1 103 1004-1113 7-111 (129)
375 PRK05022 anaerobic nitric oxid 94.9 0.11 2.5E-06 60.7 9.9 44 1-48 190-233 (509)
376 PRK14721 flhF flagellar biosyn 94.9 0.12 2.6E-06 57.5 9.3 88 24-113 190-278 (420)
377 PRK05480 uridine/cytidine kina 94.9 0.024 5.2E-07 57.8 3.7 25 24-48 5-29 (209)
378 PF10236 DAP3: Mitochondrial r 94.9 0.22 4.8E-06 53.7 11.2 49 155-204 258-306 (309)
379 COG1126 GlnQ ABC-type polar am 94.8 0.16 3.5E-06 49.4 8.8 23 25-47 28-50 (240)
380 TIGR01425 SRP54_euk signal rec 94.8 0.11 2.3E-06 57.9 8.8 25 23-47 98-122 (429)
381 TIGR00235 udk uridine kinase. 94.8 0.024 5.2E-07 57.5 3.6 24 24-47 5-28 (207)
382 COG1703 ArgK Putative periplas 94.8 0.03 6.5E-07 57.1 4.1 47 23-69 49-95 (323)
383 TIGR02239 recomb_RAD51 DNA rep 94.8 0.16 3.4E-06 55.0 9.9 57 23-80 94-154 (316)
384 COG1136 SalX ABC-type antimicr 94.8 0.23 4.9E-06 49.7 10.1 58 94-151 150-210 (226)
385 PRK10875 recD exonuclease V su 94.8 0.11 2.4E-06 61.3 9.3 118 26-146 168-304 (615)
386 PHA00729 NTP-binding motif con 94.8 0.034 7.4E-07 55.6 4.4 24 25-48 17-40 (226)
387 KOG1532 GTPase XAB1, interacts 94.8 0.11 2.4E-06 51.8 7.8 28 21-48 15-42 (366)
388 KOG2123 Uncharacterized conser 94.8 0.0016 3.6E-08 64.5 -4.7 55 963-1020 20-74 (388)
389 PTZ00088 adenylate kinase 1; P 94.8 0.025 5.4E-07 57.7 3.5 20 28-47 9-28 (229)
390 PF12775 AAA_7: P-loop contain 94.7 0.024 5.2E-07 59.7 3.4 22 26-47 34-55 (272)
391 COG1428 Deoxynucleoside kinase 94.7 0.019 4.1E-07 55.6 2.4 24 25-48 4-27 (216)
392 PRK06995 flhF flagellar biosyn 94.7 0.17 3.7E-06 57.3 10.2 89 24-114 255-344 (484)
393 PRK10463 hydrogenase nickel in 94.7 0.14 3E-06 53.6 8.8 26 23-48 102-127 (290)
394 cd00267 ABC_ATPase ABC (ATP-bi 94.7 0.08 1.7E-06 51.0 6.8 117 26-150 26-146 (157)
395 PF08433 KTI12: Chromatin asso 94.7 0.071 1.5E-06 55.8 6.8 22 26-47 2-23 (270)
396 KOG2123 Uncharacterized conser 94.7 0.0014 3.1E-08 64.9 -5.3 85 985-1073 19-104 (388)
397 cd03282 ABC_MSH4_euk MutS4 hom 94.7 0.067 1.5E-06 53.6 6.3 120 25-151 29-158 (204)
398 PTZ00035 Rad51 protein; Provis 94.7 0.19 4E-06 54.9 10.1 57 23-80 116-176 (337)
399 cd01135 V_A-ATPase_B V/A-type 94.7 0.17 3.8E-06 52.2 9.2 88 26-113 70-175 (276)
400 PF00006 ATP-synt_ab: ATP synt 94.6 0.1 2.2E-06 52.5 7.4 84 26-113 16-114 (215)
401 COG1936 Predicted nucleotide k 94.6 0.026 5.5E-07 52.6 2.8 20 27-46 2-21 (180)
402 PRK10416 signal recognition pa 94.6 0.12 2.6E-06 55.7 8.5 26 23-48 112-137 (318)
403 PF03969 AFG1_ATPase: AFG1-lik 94.6 0.055 1.2E-06 59.3 5.9 108 23-145 60-168 (362)
404 PF13306 LRR_5: Leucine rich r 94.6 0.11 2.5E-06 48.0 7.4 116 985-1108 12-129 (129)
405 PRK06002 fliI flagellum-specif 94.6 0.15 3.2E-06 57.0 9.1 85 26-113 166-263 (450)
406 cd03215 ABC_Carb_Monos_II This 94.6 0.11 2.4E-06 51.5 7.5 23 26-48 27-49 (182)
407 PF08298 AAA_PrkA: PrkA AAA do 94.5 0.045 9.7E-07 58.1 4.8 47 1-47 64-110 (358)
408 TIGR01420 pilT_fam pilus retra 94.5 0.086 1.9E-06 58.0 7.3 85 26-116 123-207 (343)
409 PRK04301 radA DNA repair and r 94.5 0.13 2.7E-06 56.3 8.5 53 23-75 100-156 (317)
410 cd01125 repA Hexameric Replica 94.5 0.15 3.3E-06 53.1 8.8 21 27-47 3-23 (239)
411 COG0714 MoxR-like ATPases [Gen 94.5 0.072 1.6E-06 58.6 6.6 63 1-76 27-89 (329)
412 cd03233 ABC_PDR_domain1 The pl 94.5 0.26 5.6E-06 49.8 10.1 24 25-48 33-56 (202)
413 PRK04328 hypothetical protein; 94.5 0.13 2.8E-06 53.8 8.1 40 24-65 22-61 (249)
414 PRK04040 adenylate kinase; Pro 94.4 0.032 6.8E-07 55.2 3.3 23 25-47 2-24 (188)
415 PRK05973 replicative DNA helic 94.4 0.22 4.8E-06 50.7 9.3 49 24-76 63-111 (237)
416 cd03217 ABC_FeS_Assembly ABC-t 94.4 0.15 3.3E-06 51.3 8.3 24 25-48 26-49 (200)
417 cd03369 ABCC_NFT1 Domain 2 of 94.4 0.38 8.3E-06 48.9 11.3 23 25-47 34-56 (207)
418 PF13245 AAA_19: Part of AAA d 94.4 0.051 1.1E-06 44.1 3.8 21 26-46 11-31 (76)
419 TIGR03575 selen_PSTK_euk L-ser 94.4 0.085 1.8E-06 56.9 6.6 21 28-48 2-22 (340)
420 PF13481 AAA_25: AAA domain; P 94.4 0.14 2.9E-06 51.6 7.9 41 26-66 33-81 (193)
421 COG4618 ArpD ABC-type protease 94.3 0.33 7.1E-06 53.6 10.7 21 26-46 363-383 (580)
422 COG1120 FepC ABC-type cobalami 94.3 0.16 3.4E-06 52.0 7.9 23 25-47 28-50 (258)
423 COG0003 ArsA Predicted ATPase 94.3 0.073 1.6E-06 56.9 5.8 49 25-75 2-50 (322)
424 TIGR02858 spore_III_AA stage I 94.3 0.14 2.9E-06 53.7 7.6 113 25-147 111-232 (270)
425 cd02028 UMPK_like Uridine mono 94.2 0.083 1.8E-06 51.9 5.7 21 27-47 1-21 (179)
426 PRK03846 adenylylsulfate kinas 94.2 0.11 2.4E-06 52.3 6.8 25 23-47 22-46 (198)
427 PRK09519 recA DNA recombinatio 94.2 0.18 3.8E-06 60.4 9.2 84 23-113 58-147 (790)
428 TIGR00455 apsK adenylylsulfate 94.2 0.23 5E-06 49.3 8.9 24 24-47 17-40 (184)
429 TIGR03881 KaiC_arch_4 KaiC dom 94.2 0.26 5.7E-06 51.1 9.7 40 24-65 19-58 (229)
430 PRK12597 F0F1 ATP synthase sub 94.2 0.17 3.7E-06 56.9 8.6 87 26-113 144-246 (461)
431 PRK05917 DNA polymerase III su 94.2 0.42 9.1E-06 50.2 10.9 130 7-161 6-154 (290)
432 TIGR01447 recD exodeoxyribonuc 94.1 0.15 3.3E-06 60.0 8.5 22 26-47 161-182 (586)
433 PRK03839 putative kinase; Prov 94.1 0.037 8E-07 54.8 3.0 22 27-48 2-23 (180)
434 TIGR01360 aden_kin_iso1 adenyl 94.1 0.04 8.7E-07 55.2 3.3 24 24-47 2-25 (188)
435 cd03245 ABCC_bacteriocin_expor 94.1 0.33 7.3E-06 49.9 10.2 23 25-47 30-52 (220)
436 cd03285 ABC_MSH2_euk MutS2 hom 94.0 0.027 5.9E-07 57.4 1.9 23 24-46 29-51 (222)
437 COG4240 Predicted kinase [Gene 94.0 0.16 3.5E-06 49.3 6.9 84 22-106 47-135 (300)
438 PRK08972 fliI flagellum-specif 94.0 0.26 5.7E-06 54.7 9.5 84 26-113 163-261 (444)
439 PRK00625 shikimate kinase; Pro 94.0 0.039 8.5E-07 53.5 2.8 21 27-47 2-22 (173)
440 COG0396 sufC Cysteine desulfur 93.9 0.4 8.8E-06 47.2 9.4 24 26-49 31-54 (251)
441 TIGR03522 GldA_ABC_ATP gliding 93.9 0.34 7.3E-06 52.5 10.2 23 25-47 28-50 (301)
442 PRK11823 DNA repair protein Ra 93.9 0.38 8.1E-06 55.0 11.0 82 24-113 79-165 (446)
443 TIGR02655 circ_KaiC circadian 93.9 0.15 3.2E-06 59.2 7.8 49 23-75 261-309 (484)
444 PF06745 KaiC: KaiC; InterPro 93.9 0.073 1.6E-06 55.1 4.8 85 24-113 18-124 (226)
445 COG2019 AdkA Archaeal adenylat 93.9 0.054 1.2E-06 49.9 3.2 23 25-47 4-26 (189)
446 PRK15453 phosphoribulokinase; 93.9 0.3 6.6E-06 50.5 9.0 24 24-47 4-27 (290)
447 cd02024 NRK1 Nicotinamide ribo 93.9 0.038 8.3E-07 54.1 2.5 22 27-48 1-22 (187)
448 cd00227 CPT Chloramphenicol (C 93.9 0.046 9.9E-07 53.8 3.1 22 26-47 3-24 (175)
449 COG1066 Sms Predicted ATP-depe 93.9 0.31 6.8E-06 52.4 9.2 82 24-114 92-178 (456)
450 PRK00131 aroK shikimate kinase 93.9 0.046 9.9E-07 54.0 3.2 24 25-48 4-27 (175)
451 KOG1947 Leucine rich repeat pr 93.9 0.0057 1.2E-07 72.5 -4.0 194 962-1164 188-414 (482)
452 cd03244 ABCC_MRP_domain2 Domai 93.8 0.38 8.1E-06 49.6 10.0 22 26-47 31-52 (221)
453 cd02021 GntK Gluconate kinase 93.8 0.038 8.3E-07 52.8 2.4 22 27-48 1-22 (150)
454 TIGR00416 sms DNA repair prote 93.8 0.38 8.2E-06 54.9 10.7 39 24-64 93-131 (454)
455 PF03215 Rad17: Rad17 cell cyc 93.8 0.082 1.8E-06 60.9 5.4 54 4-62 25-78 (519)
456 PRK12678 transcription termina 93.8 0.089 1.9E-06 59.4 5.4 87 26-113 417-512 (672)
457 PLN02348 phosphoribulokinase 93.8 0.23 4.9E-06 54.2 8.3 27 22-48 46-72 (395)
458 cd03251 ABCC_MsbA MsbA is an e 93.8 0.58 1.2E-05 48.7 11.4 23 25-47 28-50 (234)
459 TIGR00390 hslU ATP-dependent p 93.8 0.2 4.3E-06 55.0 7.8 48 1-48 15-70 (441)
460 COG2842 Uncharacterized ATPase 93.8 0.27 5.8E-06 50.6 8.3 97 25-129 94-190 (297)
461 cd02029 PRK_like Phosphoribulo 93.7 0.16 3.5E-06 51.9 6.7 77 27-105 1-85 (277)
462 COG0467 RAD55 RecA-superfamily 93.7 0.075 1.6E-06 56.3 4.7 50 23-76 21-70 (260)
463 TIGR01313 therm_gnt_kin carboh 93.7 0.19 4.1E-06 48.8 7.2 21 28-48 1-21 (163)
464 PTZ00185 ATPase alpha subunit; 93.7 0.38 8.2E-06 53.9 10.0 87 26-113 190-298 (574)
465 cd03213 ABCG_EPDR ABCG transpo 93.7 0.31 6.7E-06 48.8 8.8 24 25-48 35-58 (194)
466 COG4181 Predicted ABC-type tra 93.7 0.69 1.5E-05 43.1 9.9 84 68-152 122-215 (228)
467 cd00544 CobU Adenosylcobinamid 93.7 0.14 3.1E-06 49.3 6.1 79 28-113 2-82 (169)
468 COG1643 HrpA HrpA-like helicas 93.7 0.32 7E-06 58.9 10.2 132 5-146 53-207 (845)
469 PRK09280 F0F1 ATP synthase sub 93.7 0.24 5.2E-06 55.5 8.6 87 26-113 145-247 (463)
470 TIGR02322 phosphon_PhnN phosph 93.7 0.051 1.1E-06 53.8 3.1 23 26-48 2-24 (179)
471 cd03232 ABC_PDR_domain2 The pl 93.7 0.3 6.4E-06 48.9 8.6 23 25-47 33-55 (192)
472 COG0194 Gmk Guanylate kinase [ 93.6 0.06 1.3E-06 51.1 3.2 24 25-48 4-27 (191)
473 KOG0727 26S proteasome regulat 93.6 0.097 2.1E-06 51.3 4.7 47 2-48 159-212 (408)
474 PF06309 Torsin: Torsin; Inte 93.6 0.13 2.8E-06 45.7 5.1 28 21-48 49-76 (127)
475 PRK09435 membrane ATPase/prote 93.6 0.22 4.7E-06 53.8 7.8 25 23-47 54-78 (332)
476 PRK14737 gmk guanylate kinase; 93.6 0.067 1.4E-06 52.8 3.7 25 24-48 3-27 (186)
477 PRK12339 2-phosphoglycerate ki 93.6 0.055 1.2E-06 53.7 3.1 24 25-48 3-26 (197)
478 PF03266 NTPase_1: NTPase; In 93.6 0.051 1.1E-06 52.4 2.8 21 28-48 2-22 (168)
479 TIGR01359 UMP_CMP_kin_fam UMP- 93.6 0.045 9.8E-07 54.4 2.5 21 27-47 1-21 (183)
480 PRK13765 ATP-dependent proteas 93.6 0.14 3E-06 60.6 6.7 72 1-82 34-105 (637)
481 PF02374 ArsA_ATPase: Anion-tr 93.5 0.08 1.7E-06 56.9 4.5 42 26-69 2-43 (305)
482 cd02023 UMPK Uridine monophosp 93.5 0.047 1E-06 55.1 2.6 21 27-47 1-21 (198)
483 PRK10751 molybdopterin-guanine 93.5 0.077 1.7E-06 50.9 3.8 25 24-48 5-29 (173)
484 cd03250 ABCC_MRP_domain1 Domai 93.5 1.2 2.6E-05 45.1 12.9 24 25-48 31-54 (204)
485 COG1117 PstB ABC-type phosphat 93.5 0.38 8.3E-06 46.7 8.3 23 24-46 32-54 (253)
486 cd01129 PulE-GspE PulE/GspE Th 93.5 0.22 4.7E-06 52.4 7.4 81 26-116 81-161 (264)
487 PRK09544 znuC high-affinity zi 93.4 0.38 8.2E-06 50.4 9.3 24 25-48 30-53 (251)
488 COG5635 Predicted NTPase (NACH 93.4 0.052 1.1E-06 67.5 3.3 136 27-167 224-371 (824)
489 COG3640 CooC CO dehydrogenase 93.4 0.12 2.6E-06 50.9 4.9 42 27-69 2-43 (255)
490 TIGR02788 VirB11 P-type DNA tr 93.4 0.11 2.5E-06 56.2 5.4 84 26-115 145-229 (308)
491 PRK08927 fliI flagellum-specif 93.4 0.39 8.4E-06 53.6 9.5 84 26-113 159-257 (442)
492 cd00984 DnaB_C DnaB helicase C 93.4 0.47 1E-05 49.7 10.0 52 24-78 12-63 (242)
493 smart00534 MUTSac ATPase domai 93.4 0.087 1.9E-06 52.2 4.1 20 27-46 1-20 (185)
494 PF03193 DUF258: Protein of un 93.4 0.1 2.2E-06 49.2 4.3 35 5-48 24-58 (161)
495 PRK08149 ATP synthase SpaL; Va 93.3 0.41 8.8E-06 53.4 9.5 84 26-113 152-250 (428)
496 TIGR02868 CydC thiol reductant 93.3 0.28 6E-06 58.4 9.1 23 25-47 361-383 (529)
497 TIGR03305 alt_F1F0_F1_bet alte 93.3 0.34 7.3E-06 54.2 8.9 87 26-113 139-241 (449)
498 cd03243 ABC_MutS_homologs The 93.3 0.36 7.9E-06 48.7 8.6 22 26-47 30-51 (202)
499 cd01136 ATPase_flagellum-secre 93.3 0.53 1.1E-05 50.6 10.0 84 26-113 70-168 (326)
500 PF13479 AAA_24: AAA domain 93.3 0.26 5.6E-06 50.2 7.5 20 26-45 4-23 (213)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-68 Score=630.94 Aligned_cols=490 Identities=33% Similarity=0.530 Sum_probs=401.8
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcc-hhccCCceEEEEEcCCCCHHHHHHHHHHh
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDR-VRRHFEIKAWTFVSEDFDVFRVTKSILMS 79 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~-~~~~f~~~~w~~~~~~~~~~~~~~~i~~~ 79 (1165)
||+++.++.+.+.|.++. ..+++|+||||+||||||++++++.. ++.+|+.++||.|++.++...++.+|++.
T Consensus 161 VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~ 234 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILER 234 (889)
T ss_pred ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHH
Confidence 799999999999997653 27999999999999999999999887 99999999999999999999999999999
Q ss_pred ccCCCCCC--CCHHHHHHHHHHHhcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCchHHHHh-hccccee
Q 038861 80 ISNVTVND--NDLNSLQEKLEKELIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRVVAER-VGSVREY 156 (1165)
Q Consensus 80 l~~~~~~~--~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~~~~~-~~~~~~~ 156 (1165)
++...... ...++.+..+.+.|+++|++||+||||+. .+|+.+..++|....||+|++|||++.|+.. ++....+
T Consensus 235 l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~ 312 (889)
T KOG4658|consen 235 LGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPI 312 (889)
T ss_pred hccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccc
Confidence 88754432 23468888999999999999999999998 5699999999999889999999999999998 6777889
Q ss_pred eCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHhhhcCCCChhHHHHHHhccccc----cC
Q 038861 157 PLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLGGLLRGKHDPKDWEIVLNADVWD----FA 232 (1165)
Q Consensus 157 ~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~~~~~~~~----~~ 232 (1165)
++..|+++|||++|++.|+.... ...+..+++|++++++|+|+|||++++|+.|+.+++..+|+.+.....+. ..
T Consensus 313 ~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~ 391 (889)
T KOG4658|consen 313 EVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFS 391 (889)
T ss_pred cccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCC
Confidence 99999999999999999987643 34455889999999999999999999999999999999999998876544 22
Q ss_pred CCCCChhHHHHhccccCcHHHHhHhhhhcCCCCCCccChHHHHHHHHHcCCcccccCcccHHHHHHHHHHHHHHcCcccc
Q 038861 233 DDGCDIIPALKVSYRFLPPQLKQCFAYCSLFPKDYEFEEEEIILLWTAEGFLDQECDGRKMEELGREFVRELHSRSLFHQ 312 (1165)
Q Consensus 233 ~~~~~~~~~l~~sy~~L~~~~k~~fl~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~li~~ 312 (1165)
+....+++++++|||.||++.|.||+|||+||+|+.|+++.++.+|+|+||+.+..++..+++.+++|+.+|++++++..
T Consensus 392 ~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~ 471 (889)
T KOG4658|consen 392 GMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIE 471 (889)
T ss_pred chhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhh
Confidence 23467899999999999999999999999999999999999999999999999977788999999999999999999987
Q ss_pred cc--CCCCeEEEehHHHHHHHHhcc-----ccEEEEccc--cccccccccCCceeEEEEEecccccccccccccCCCCcc
Q 038861 313 SS--KDASRFVMHSLINDLARWAAG-----EIYFRMEDT--LKGENQKSFSKNLRHFSYILGEYDGEKRLKSICDGEHLR 383 (1165)
Q Consensus 313 ~~--~~~~~~~~H~li~~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 383 (1165)
.+ ....+|.|||+||++|.|++. ++...+... .........+...|+.+++....... ..-..+++|+
T Consensus 472 ~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~---~~~~~~~~L~ 548 (889)
T KOG4658|consen 472 ERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHI---AGSSENPKLR 548 (889)
T ss_pred cccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhc---cCCCCCCccc
Confidence 54 356789999999999999999 343333321 11111122235678888887653222 2223445688
Q ss_pred eeeccceeeeccCcc-cccccccc-ccCcccccccccCCC-CccccCcccccCCCccEEeccCcchhccccccccCCCCc
Q 038861 384 TFLPVKLVFSLWGYC-NIFNLPNE-IGNLRHLRFLNLSGT-NIQILPESINSLYNLHTILLEDCRRLKKLCNDMGNLTKL 460 (1165)
Q Consensus 384 ~l~~~~~~l~l~~~~-~l~~lp~~-~~~l~~Lr~L~L~~~-~i~~lp~~~~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L 460 (1165)
+++ +.++. .+..++.. |..|++||+|||++| .+..+|.+|+.|.+||+|++++ +.+..+|.++.+|++|
T Consensus 549 tLl-------l~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 549 TLL-------LQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKL 620 (889)
T ss_pred eEE-------EeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhh
Confidence 664 33331 25556554 778999999999976 4668999999999999999998 5677899999999999
Q ss_pred ceeeccCCCCCCCCCCCcccccccceeceEEec-cccCCCccccCCccccc
Q 038861 461 HHLRNSNVHSLGEMPKGFGKLTCLLTLGRFVVG-KVSGSGLRELKSLTHLQ 510 (1165)
Q Consensus 461 ~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~-~~~~~~~~~l~~L~~L~ 510 (1165)
.+|++..+.....+|..+..|.+|++|..+... ......+.++.+|++|+
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~ 671 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE 671 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchh
Confidence 999999888777776667779999999776654 33344455555555554
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=6.2e-59 Score=587.29 Aligned_cols=685 Identities=22% Similarity=0.316 Sum_probs=452.6
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEE---cCCC----------
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFV---SEDF---------- 67 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~---~~~~---------- 67 (1165)
|||++.++++.+++.-+ .+++++|+|+||||+||||||+++|+ ++..+|++.+|+.. ....
T Consensus 187 vG~~~~l~~l~~lL~l~----~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 187 VGIEDHIAKMSSLLHLE----SEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred cchHHHHHHHHHHHccc----cCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccc
Confidence 79999999999988533 34689999999999999999999995 57788988888742 1110
Q ss_pred -C-HHHHHHHHHHhccCCCC-CCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCch
Q 038861 68 -D-VFRVTKSILMSISNVTV-NDNDLNSLQEKLEKELIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNR 144 (1165)
Q Consensus 68 -~-~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~ 144 (1165)
. ...++.+++.++..... .... ...+++.++++|+||||||||+. .+|+.+.....+.++|++||||||++
T Consensus 261 ~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~ 334 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDK 334 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcH
Confidence 0 12334444444432211 1111 24577889999999999999765 57888876666678899999999999
Q ss_pred HHHHhhcccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHhhhcCCCChhHHHHHH
Q 038861 145 VVAERVGSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLGGLLRGKHDPKDWEIVL 224 (1165)
Q Consensus 145 ~~~~~~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~~ 224 (1165)
.++..++..+.|+++.++++||+++|+++||+.. .+++++.+++++|+++|+|+|||++++|++|+++ +..+|+.++
T Consensus 335 ~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~--~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l 411 (1153)
T PLN03210 335 HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN--SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDML 411 (1153)
T ss_pred HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC--CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHH
Confidence 9998777778999999999999999999999764 3456788999999999999999999999999987 678999998
Q ss_pred hccccccCCCCCChhHHHHhccccCcH-HHHhHhhhhcCCCCCCccChHHHHHHHHHcCCcccccCcccHHHHHHHHHHH
Q 038861 225 NADVWDFADDGCDIIPALKVSYRFLPP-QLKQCFAYCSLFPKDYEFEEEEIILLWTAEGFLDQECDGRKMEELGREFVRE 303 (1165)
Q Consensus 225 ~~~~~~~~~~~~~~~~~l~~sy~~L~~-~~k~~fl~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~~ 303 (1165)
++..... ...+.++|++||+.|++ .+|.||+++|+|+.+..++ .+..|.+.+... ++..++.
T Consensus 412 ~~L~~~~---~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~-----------~~~~l~~ 474 (1153)
T PLN03210 412 PRLRNGL---DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLD-----------VNIGLKN 474 (1153)
T ss_pred HHHHhCc---cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCC-----------chhChHH
Confidence 8765422 34799999999999976 5999999999998886443 356666665432 1223889
Q ss_pred HHHcCccccccCCCCeEEEehHHHHHHHHhccccEE-------EEccccc--cccccccCCceeEEEEEecccccccccc
Q 038861 304 LHSRSLFHQSSKDASRFVMHSLINDLARWAAGEIYF-------RMEDTLK--GENQKSFSKNLRHFSYILGEYDGEKRLK 374 (1165)
Q Consensus 304 L~~~~li~~~~~~~~~~~~H~li~~~~~~~~~~~~~-------~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 374 (1165)
|++++|++... .++.||+++|++|++++.++.. .+..... .-....-.+.++.+++
T Consensus 475 L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l------------ 539 (1153)
T PLN03210 475 LVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITL------------ 539 (1153)
T ss_pred HHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEe------------
Confidence 99999998643 4799999999999999765421 0000000 0000000012222222
Q ss_pred cccCCCCcceeeccceeeeccCccccccccccccCcccccccccCCCC------cc-ccCcccccCC-CccEEeccCcch
Q 038861 375 SICDGEHLRTFLPVKLVFSLWGYCNIFNLPNEIGNLRHLRFLNLSGTN------IQ-ILPESINSLY-NLHTILLEDCRR 446 (1165)
Q Consensus 375 ~~~~~~~l~~l~~~~~~l~l~~~~~l~~lp~~~~~l~~Lr~L~L~~~~------i~-~lp~~~~~L~-~L~~L~L~~~~~ 446 (1165)
+......+.--+..|.+|++|++|.+..+. +. .+|..+..++ +|+.|.+.++ .
T Consensus 540 ------------------~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~ 600 (1153)
T PLN03210 540 ------------------DIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-P 600 (1153)
T ss_pred ------------------ccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-C
Confidence 221111111112345666666666665432 11 3444444443 3555555553 3
Q ss_pred hccccccccCCCCcceeeccCCCCCCCCCCCcccccccceeceEEeccccCCCccccCCccccccceeeccccCCCchhh
Q 038861 447 LKKLCNDMGNLTKLHHLRNSNVHSLGEMPKGFGKLTCLLTLGRFVVGKVSGSGLRELKSLTHLQETLRISKLENVKDVCD 526 (1165)
Q Consensus 447 ~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~ 526 (1165)
.+.+|..| .+.+|++|++.+|. +..+|.++..+++|+.|
T Consensus 601 l~~lP~~f-~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L--------------------------------------- 639 (1153)
T PLN03210 601 LRCMPSNF-RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNI--------------------------------------- 639 (1153)
T ss_pred CCCCCCcC-CccCCcEEECcCcc-ccccccccccCCCCCEE---------------------------------------
Confidence 44455444 34555555555554 33344333333333322
Q ss_pred hhHhhcCCCcCccceEeeeccccccCccchhhHHhhhccCCCCcCcceEEEEeeC-CCCCCcCcCCCCCCceeEEeEccc
Q 038861 527 ACEAQLNNKVNLKALLLEWSIWHVRNLDQCEFETRVLSMLKPYQDVQELTITGYG-GPKFPIWLGDSSFSKLVRLKFEHC 605 (1165)
Q Consensus 527 ~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~p~~~~~~~~~~L~~L~L~~~ 605 (1165)
+++++. ...+|. + ..+++|+.|+|++|
T Consensus 640 -------------------------------------------------~Ls~~~~l~~ip~-l--s~l~~Le~L~L~~c 667 (1153)
T PLN03210 640 -------------------------------------------------DLRGSKNLKEIPD-L--SMATNLETLKLSDC 667 (1153)
T ss_pred -------------------------------------------------ECCCCCCcCcCCc-c--ccCCcccEEEecCC
Confidence 222111 112221 1 12556777777777
Q ss_pred CCCCCCC-CCCCCCCCceeeecCCCCceEeCccccCCCCccCCCCcceeeccccccccccccCCCCCcccCcCCccceee
Q 038861 606 GTSTSLP-SVGQLPFLKELVISGMGRVKSVGSEFYGSSCSVPFPSLETLYFANMQEWEEWIPFGSGQEVDEVFPKLRKLS 684 (1165)
Q Consensus 606 ~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ 684 (1165)
.....+| .++.+++|+.|++++|..++.+|... . +++|+.|++++|..+..+.. ..++|+.|+
T Consensus 668 ~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~------l~sL~~L~Lsgc~~L~~~p~---------~~~nL~~L~ 731 (1153)
T PLN03210 668 SSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N------LKSLYRLNLSGCSRLKSFPD---------ISTNISWLD 731 (1153)
T ss_pred CCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C------CCCCCEEeCCCCCCcccccc---------ccCCcCeee
Confidence 7666666 57788888888888887776666543 1 56666666666544332211 134566666
Q ss_pred ecCCcccccCCCccccccceEEeecccccccccCCCCCceEEEEecCCcccccCcccccccccccccccceeEeccCC--
Q 038861 685 LFSCSKLQGALPKRLLLLERLVIQSCKQLLVTIQCLPALSELQIKGCKRVVLSSPMDLSSLKSVLLGEMANEVISGCP-- 762 (1165)
Q Consensus 685 l~~c~~l~~~~p~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~~~l~~~~i~~~~-- 762 (1165)
+.+ +.+. .+|.. + .+++|+.|.+.++..... .. .+..++
T Consensus 732 L~~-n~i~-~lP~~------------------~-~l~~L~~L~l~~~~~~~l--~~----------------~~~~l~~~ 772 (1153)
T PLN03210 732 LDE-TAIE-EFPSN------------------L-RLENLDELILCEMKSEKL--WE----------------RVQPLTPL 772 (1153)
T ss_pred cCC-Cccc-ccccc------------------c-cccccccccccccchhhc--cc----------------cccccchh
Confidence 655 3343 34421 1 245566666555331110 00 000010
Q ss_pred CccccCCcCceEecCCCCccccchhhcCCCCcceEEEcCCCCccccCCCCCcccccEEEeccCCCCCCChHHHhhcCccc
Q 038861 763 QLLSLVTEDDLELSNCKGLTKLPQALLTLSSLRELRISGCASLVSFPQAALPSQLRTFKIEHCNALESLPEAWMRNSNSS 842 (1165)
Q Consensus 763 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 842 (1165)
.....++|+.|++++|.....+|..+.++++|+.|++++|..+..+|....+++|++|++++|..+..+|.. ..+
T Consensus 773 ~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~-----~~n 847 (1153)
T PLN03210 773 MTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI-----STN 847 (1153)
T ss_pred hhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc-----ccc
Confidence 111246788999999999999999999999999999999998888887777899999999999888777642 257
Q ss_pred cccccccceeecccccccCCchhhhcCCCCCcceEEEeCCCCCcccc-ccCCccccceEeeccCcCccccc
Q 038861 843 LQSLEIGTIEIEECNALESLPEAWMQDSSTSLESLNIDGCDSLTYIA-RIQLPPSLRRLIISDCYNLRTLT 912 (1165)
Q Consensus 843 L~~l~l~~~~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~l~ 912 (1165)
++.|+++++.+... |.+ ...+++|+.|++++|+.+..++ ....+++|+.+++++|..+..+.
T Consensus 848 L~~L~Ls~n~i~~i------P~s--i~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 848 ISDLNLSRTGIEEV------PWW--IEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred cCEeECCCCCCccC------hHH--HhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 88888888766543 332 2458999999999999988775 34567899999999999886553
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.6e-41 Score=431.23 Aligned_cols=525 Identities=20% Similarity=0.202 Sum_probs=285.8
Q ss_pred eeeccCccccc-cccccccCcccccccccCCCCcc-ccCcccc-cCCCccEEeccCcchhccccccccCCCCcceeeccC
Q 038861 391 VFSLWGYCNIF-NLPNEIGNLRHLRFLNLSGTNIQ-ILPESIN-SLYNLHTILLEDCRRLKKLCNDMGNLTKLHHLRNSN 467 (1165)
Q Consensus 391 ~l~l~~~~~l~-~lp~~~~~l~~Lr~L~L~~~~i~-~lp~~~~-~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~ 467 (1165)
.+++.++ .+. .+|..|..+++|++|+|++|.+. .+|..+. .+.+|++|+|++|...+.+|. +.+++|++|++++
T Consensus 73 ~L~L~~~-~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~ 149 (968)
T PLN00113 73 SIDLSGK-NISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSN 149 (968)
T ss_pred EEEecCC-CccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcC
Confidence 3455555 333 35666778888888888888876 6777654 788888888888777666664 4577888888888
Q ss_pred CCCCCCCCCCcccccccceeceEEeccccCCCccccCCccccccceeeccccCCCchhhhhHhhcCCCcCccceEeeecc
Q 038861 468 VHSLGEMPKGFGKLTCLLTLGRFVVGKVSGSGLRELKSLTHLQETLRISKLENVKDVCDACEAQLNNKVNLKALLLEWSI 547 (1165)
Q Consensus 468 ~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 547 (1165)
|.+.+.+|..++.+++|++|.
T Consensus 150 n~~~~~~p~~~~~l~~L~~L~----------------------------------------------------------- 170 (968)
T PLN00113 150 NMLSGEIPNDIGSFSSLKVLD----------------------------------------------------------- 170 (968)
T ss_pred CcccccCChHHhcCCCCCEEE-----------------------------------------------------------
Confidence 876667777777777777662
Q ss_pred ccccCccchhhHHhhhccCCCCcCcceEEEEeeCCC-CCCcCcCCCCCCceeEEeEcccCCCCCCC-CCCCCCCCceeee
Q 038861 548 WHVRNLDQCEFETRVLSMLKPYQDVQELTITGYGGP-KFPIWLGDSSFSKLVRLKFEHCGTSTSLP-SVGQLPFLKELVI 625 (1165)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l 625 (1165)
+..+.+....+..+..+++|+.|++++|... .+|..+.. +++|+.|++++|.+...+| .++.+++|++|++
T Consensus 171 -----L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 243 (968)
T PLN00113 171 -----LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ--MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243 (968)
T ss_pred -----CccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcC--cCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence 2222222233344555666666666666543 34555543 6677777777777766665 4677777777777
Q ss_pred cCCCCceEeCccccCCCCccCCCCcceeeccccccccccccCCCCCcccCcCCccceeeecCCcccccCCCccccccceE
Q 038861 626 SGMGRVKSVGSEFYGSSCSVPFPSLETLYFANMQEWEEWIPFGSGQEVDEVFPKLRKLSLFSCSKLQGALPKRLLLLERL 705 (1165)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L 705 (1165)
++|...+..+..+.. +++|+.|+++++.. .+..+.. ...+++|+.|++++ +++.+.+|.
T Consensus 244 ~~n~l~~~~p~~l~~------l~~L~~L~L~~n~l-~~~~p~~-----l~~l~~L~~L~Ls~-n~l~~~~p~-------- 302 (968)
T PLN00113 244 VYNNLTGPIPSSLGN------LKNLQYLFLYQNKL-SGPIPPS-----IFSLQKLISLDLSD-NSLSGEIPE-------- 302 (968)
T ss_pred cCceeccccChhHhC------CCCCCEEECcCCee-eccCchh-----HhhccCcCEEECcC-CeeccCCCh--------
Confidence 777655555555444 55666666655421 1111111 12255666666666 344444443
Q ss_pred EeecccccccccCCCCCceEEEEecCCcccccCcccccccccccccccceeEeccCCCccccCCcCceEecCCCCccccc
Q 038861 706 VIQSCKQLLVTIQCLPALSELQIKGCKRVVLSSPMDLSSLKSVLLGEMANEVISGCPQLLSLVTEDDLELSNCKGLTKLP 785 (1165)
Q Consensus 706 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~~~l~~~~i~~~~~l~~l~~L~~L~l~~~~~~~~~~ 785 (1165)
.+..+++|+.|++++|. +....|. .+..+++|+.|++++|.+.+.+|
T Consensus 303 ----------~~~~l~~L~~L~l~~n~-~~~~~~~----------------------~~~~l~~L~~L~L~~n~l~~~~p 349 (968)
T PLN00113 303 ----------LVIQLQNLEILHLFSNN-FTGKIPV----------------------ALTSLPRLQVLQLWSNKFSGEIP 349 (968)
T ss_pred ----------hHcCCCCCcEEECCCCc-cCCcCCh----------------------hHhcCCCCCEEECcCCCCcCcCC
Confidence 34455666666666533 2212221 24455666777777777766777
Q ss_pred hhhcCCCCcceEEEcCCCCccccCCC-CCcccccEEEeccCCCCCCChHHHhhcCccccccccccceeecccccccCCch
Q 038861 786 QALLTLSSLRELRISGCASLVSFPQA-ALPSQLRTFKIEHCNALESLPEAWMRNSNSSLQSLEIGTIEIEECNALESLPE 864 (1165)
Q Consensus 786 ~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~l~~l~~ 864 (1165)
..+..+++|+.|++++|.....+|.. ...++|+.|++++|++...+|..+.. ..+|+.+++++|.+.+. +|.
T Consensus 350 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~--~~~L~~L~L~~n~l~~~-----~p~ 422 (968)
T PLN00113 350 KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA--CRSLRRVRLQDNSFSGE-----LPS 422 (968)
T ss_pred hHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhC--CCCCCEEECcCCEeeeE-----CCh
Confidence 77777777777777777655444422 23466777777777766666654422 13344444444433321 111
Q ss_pred hhhcCCCCCcceEEEeCCCCCcccc-ccCCccccceEeeccCcCcccccCCcCccccCCCCccccccCCCCcccccccce
Q 038861 865 AWMQDSSTSLESLNIDGCDSLTYIA-RIQLPPSLRRLIISDCYNLRTLTGDQGICSSRSGRTSLTSFSSENELPATLEQL 943 (1165)
Q Consensus 865 ~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l 943 (1165)
. +..+++|+.|++++|......+ .+..+++|+.|++++|.....++ ..+
T Consensus 423 ~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p-------------------------~~~--- 472 (968)
T PLN00113 423 E--FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP-------------------------DSF--- 472 (968)
T ss_pred h--HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecC-------------------------ccc---
Confidence 0 1224555555555554333322 12334445555555443111110 000
Q ss_pred eecccccccccccCCCCCCCccEEEEcCCCCchhhhhhccc-CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCC
Q 038861 944 EVRFCSNLAFLSRNGNLPQALKYLEVSYCSKLESLAERLDN-TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNL 1022 (1165)
Q Consensus 944 ~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 1022 (1165)
-..+|+.|++++|.+.+..|..+.. ++|+.|++++|.+.+.+|..+.++++|++|+|++|.+.
T Consensus 473 ----------------~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 536 (968)
T PLN00113 473 ----------------GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536 (968)
T ss_pred ----------------ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCccc
Confidence 0023555555555544444443333 45555555555555555555555555555555555555
Q ss_pred ccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCCCCCCCcceEEEecCC
Q 038861 1023 ESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPEDGFPTNLESLEVHDLK 1091 (1165)
Q Consensus 1023 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~ 1091 (1165)
+.+|..+..+++|+.|+|++|.+.+.+|..+.++++|+.|++++|++.+.+|..+.+.++....+.+|+
T Consensus 537 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 537 GQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNI 605 (968)
T ss_pred ccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCc
Confidence 555555555555555555555555555555555555555555555555555544333444434444443
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-40 Score=425.22 Aligned_cols=527 Identities=19% Similarity=0.237 Sum_probs=374.5
Q ss_pred ccccccccCCCCcc-ccCcccccCCCccEEeccCcchhcccccccc-CCCCcceeeccCCCCCCCCCCCcccccccceec
Q 038861 411 RHLRFLNLSGTNIQ-ILPESINSLYNLHTILLEDCRRLKKLCNDMG-NLTKLHHLRNSNVHSLGEMPKGFGKLTCLLTLG 488 (1165)
Q Consensus 411 ~~Lr~L~L~~~~i~-~lp~~~~~L~~L~~L~L~~~~~~~~lp~~i~-~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 488 (1165)
.+++.|+|+++.+. .+|..+..+++|++|+|++|.....+|..+. .+++|++|++++|.+.+.+|. +.+++|++|.
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 47899999999988 6688899999999999999988778888765 999999999999997777764 3455555552
Q ss_pred eEEeccccCCCccccCCccccccceeeccccCCCchhhhhHhhcCCCcCccceEeeeccccccCccchhhHHhhhccCCC
Q 038861 489 RFVVGKVSGSGLRELKSLTHLQETLRISKLENVKDVCDACEAQLNNKVNLKALLLEWSIWHVRNLDQCEFETRVLSMLKP 568 (1165)
Q Consensus 489 ~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~l~~ 568 (1165)
+..|.+....+..+..
T Consensus 147 ----------------------------------------------------------------Ls~n~~~~~~p~~~~~ 162 (968)
T PLN00113 147 ----------------------------------------------------------------LSNNMLSGEIPNDIGS 162 (968)
T ss_pred ----------------------------------------------------------------CcCCcccccCChHHhc
Confidence 2223333334445566
Q ss_pred CcCcceEEEEeeCCC-CCCcCcCCCCCCceeEEeEcccCCCCCCC-CCCCCCCCceeeecCCCCceEeCccccCCCCccC
Q 038861 569 YQDVQELTITGYGGP-KFPIWLGDSSFSKLVRLKFEHCGTSTSLP-SVGQLPFLKELVISGMGRVKSVGSEFYGSSCSVP 646 (1165)
Q Consensus 569 ~~~L~~L~l~~~~~~-~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 646 (1165)
+++|+.|++++|... .+|..+.. +++|+.|++++|.+...+| .++.+++|+.|++++|.....++..+..
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~------ 234 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTN--LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG------ 234 (968)
T ss_pred CCCCCEEECccCcccccCChhhhh--CcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc------
Confidence 777788888777643 45666543 6777777777777766666 4777777777777777665555554443
Q ss_pred CCCcceeeccccccccccccCCCCCcccCcCCccceeeecCCcccccCCCccccccceEEeecccccccccCCCCCceEE
Q 038861 647 FPSLETLYFANMQEWEEWIPFGSGQEVDEVFPKLRKLSLFSCSKLQGALPKRLLLLERLVIQSCKQLLVTIQCLPALSEL 726 (1165)
Q Consensus 647 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L 726 (1165)
+++|++|+++++ ++++.+|. .+..+++|+.|
T Consensus 235 l~~L~~L~L~~n-------------------------------~l~~~~p~------------------~l~~l~~L~~L 265 (968)
T PLN00113 235 LTSLNHLDLVYN-------------------------------NLTGPIPS------------------SLGNLKNLQYL 265 (968)
T ss_pred CCCCCEEECcCc-------------------------------eeccccCh------------------hHhCCCCCCEE
Confidence 455555555543 23223332 22333344444
Q ss_pred EEecCCcccccCcccccccccccccccceeEeccC-C-CccccCCcCceEecCCCCccccchhhcCCCCcceEEEcCCCC
Q 038861 727 QIKGCKRVVLSSPMDLSSLKSVLLGEMANEVISGC-P-QLLSLVTEDDLELSNCKGLTKLPQALLTLSSLRELRISGCAS 804 (1165)
Q Consensus 727 ~l~~~~~l~~~~~~~~~~l~~l~~~~l~~~~i~~~-~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 804 (1165)
++++| .+....|..+..++.|..+++++|.+... + .+..+++|+.|++++|.+.+..|..+..+++|+.|++++|..
T Consensus 266 ~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 344 (968)
T PLN00113 266 FLYQN-KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344 (968)
T ss_pred ECcCC-eeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCC
Confidence 44432 22223333344444444444444444322 2 355678888999999998888899999999999999999977
Q ss_pred ccccCC-CCCcccccEEEeccCCCCCCChHHHhhcCccccccccccceeecccccccCCchhhhcCCCCCcceEEEeCCC
Q 038861 805 LVSFPQ-AALPSQLRTFKIEHCNALESLPEAWMRNSNSSLQSLEIGTIEIEECNALESLPEAWMQDSSTSLESLNIDGCD 883 (1165)
Q Consensus 805 l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~ 883 (1165)
...+|. ...+++|+.|++++|.+...+|..+.. ..+++.+++..|.+.+. +|.. ...+++|+.|++++|.
T Consensus 345 ~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~--~~~L~~L~l~~n~l~~~-----~p~~--~~~~~~L~~L~L~~n~ 415 (968)
T PLN00113 345 SGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS--SGNLFKLILFSNSLEGE-----IPKS--LGACRSLRRVRLQDNS 415 (968)
T ss_pred cCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC--cCCCCEEECcCCEeccc-----CCHH--HhCCCCCCEEECcCCE
Confidence 655553 344688999999999988778776643 35677777777766432 2221 2346788888888887
Q ss_pred CCcccc-ccCCccccceEeeccCcCcccccCCcCccccCCCCccccccCCCCcccccccceeecccccccccccCCCCCC
Q 038861 884 SLTYIA-RIQLPPSLRRLIISDCYNLRTLTGDQGICSSRSGRTSLTSFSSENELPATLEQLEVRFCSNLAFLSRNGNLPQ 962 (1165)
Q Consensus 884 ~l~~~~-~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 962 (1165)
.....+ .+..+++|+.|++++|... +..+..+.. .+
T Consensus 416 l~~~~p~~~~~l~~L~~L~Ls~N~l~-------------------------~~~~~~~~~------------------l~ 452 (968)
T PLN00113 416 FSGELPSEFTKLPLVYFLDISNNNLQ-------------------------GRINSRKWD------------------MP 452 (968)
T ss_pred eeeECChhHhcCCCCCEEECcCCccc-------------------------CccChhhcc------------------CC
Confidence 654443 4566778888888777421 111111111 25
Q ss_pred CccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeec
Q 038861 963 ALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGY 1042 (1165)
Q Consensus 963 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 1042 (1165)
+|+.|++++|...+.+|..+..++|+.|++++|.+.+.+|..+.++++|++|+|++|.+.+.+|..+..+++|++|+|++
T Consensus 453 ~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 532 (968)
T PLN00113 453 SLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532 (968)
T ss_pred CCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCC
Confidence 68999999998888888877778999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecC
Q 038861 1043 CENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGG 1115 (1165)
Q Consensus 1043 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 1115 (1165)
|.+.+.+|..|.++++|+.|++++|++.+.+|.. ..+++|+.|++++|++.+.+|.. ..+..+....+.||
T Consensus 533 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~--~~~~~~~~~~~~~n 604 (968)
T PLN00113 533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST--GAFLAINASAVAGN 604 (968)
T ss_pred CcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc--chhcccChhhhcCC
Confidence 9999999999999999999999999998888877 77889999999999998877643 33344444444554
No 5
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.4e-40 Score=359.07 Aligned_cols=278 Identities=35% Similarity=0.625 Sum_probs=223.0
Q ss_pred chHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccC
Q 038861 3 RKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISN 82 (1165)
Q Consensus 3 R~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~ 82 (1165)
||.++++|.++|.... .+.++|+|+||||+||||||++++++.+++.+|+.++|+.++...+..+++.+++.+++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 8999999999998743 468999999999999999999999876789999999999999999999999999999987
Q ss_pred CCC---CCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCchHHHHhhcc-cceeeC
Q 038861 83 VTV---NDNDLNSLQEKLEKELIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRVVAERVGS-VREYPL 158 (1165)
Q Consensus 83 ~~~---~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~~~~~~~~-~~~~~l 158 (1165)
... ...+.++....+++.++++++||||||||+. ..|+.+...++....|++||||||+..++..+.. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 643 4567788999999999999999999999765 4787777777777779999999999988776654 678999
Q ss_pred CCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHhhhcCCCChhHHHHHHhccccccCC---CC
Q 038861 159 GELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLGGLLRGKHDPKDWEIVLNADVWDFAD---DG 235 (1165)
Q Consensus 159 ~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~~~~~~~~~~~---~~ 235 (1165)
++|+++||+++|.+.++... ....+...+.+++|+++|+|+||||+++|++++.+.....|+..++........ ..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999986654 122344457899999999999999999999997665678899888664443322 34
Q ss_pred CChhHHHHhccccCcHHHHhHhhhhcCCCCCCccChHHHHHHHHHcCCcccc
Q 038861 236 CDIIPALKVSYRFLPPQLKQCFAYCSLFPKDYEFEEEEIILLWTAEGFLDQE 287 (1165)
Q Consensus 236 ~~~~~~l~~sy~~L~~~~k~~fl~la~f~~~~~i~~~~l~~~w~~~~~~~~~ 287 (1165)
..+..++.+||+.|+++.|+||++||+||.++.|+.+.++.+|+++|++...
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 5789999999999999999999999999999999999999999999998753
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=3.2e-29 Score=263.12 Aligned_cols=362 Identities=14% Similarity=0.099 Sum_probs=292.4
Q ss_pred CceEEEEecCCcccccCcccccccccccccccceeEeccCCCccccCC-cCceEecCCCCccccchhhcCCCCcceEEEc
Q 038861 722 ALSELQIKGCKRVVLSSPMDLSSLKSVLLGEMANEVISGCPQLLSLVT-EDDLELSNCKGLTKLPQALLTLSSLRELRIS 800 (1165)
Q Consensus 722 ~L~~L~l~~~~~l~~~~~~~~~~l~~l~~~~l~~~~i~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 800 (1165)
.-+.|++++ +.+....+..|.++.+|+...+..|.+..+|.+..... ++.|++.+|.+...-.+.+..++.|+.||++
T Consensus 79 ~t~~Ldlsn-Nkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSN-NKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccc-cccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 456788888 67777888888899999999999999999999987765 9999999999988888899999999999999
Q ss_pred CCCCccccCCCCCc--ccccEEEeccCCCCCCChHHHhhcCccccccccccceeecccccccCCchhhhcCCCCCcceEE
Q 038861 801 GCASLVSFPQAALP--SQLRTFKIEHCNALESLPEAWMRNSNSSLQSLEIGTIEIEECNALESLPEAWMQDSSTSLESLN 878 (1165)
Q Consensus 801 ~~~~l~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~l~~l~~~~~~~~l~~L~~L~ 878 (1165)
.| .+..++...++ .++++|++++|.+...-.+.|.. .++|..+.|+.|+++..+. ..+.+++.|+.|+
T Consensus 158 rN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~--lnsL~tlkLsrNrittLp~-------r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 158 RN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDS--LNSLLTLKLSRNRITTLPQ-------RSFKRLPKLESLD 227 (873)
T ss_pred hc-hhhcccCCCCCCCCCceEEeeccccccccccccccc--cchheeeecccCcccccCH-------HHhhhcchhhhhh
Confidence 99 45556655555 68999999999977665555533 3488888888888776553 3345688899999
Q ss_pred EeCCCCCcc-ccccCCccccceEeeccCcCcccccCCcCccccCCCCccccccCCCCcccccccceeecccccccccccC
Q 038861 879 IDGCDSLTY-IARIQLPPSLRRLIISDCYNLRTLTGDQGICSSRSGRTSLTSFSSENELPATLEQLEVRFCSNLAFLSRN 957 (1165)
Q Consensus 879 l~~~~~l~~-~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~ 957 (1165)
|..|.+-.. .-.|+.+++|+.|.+..|. +..+.++.
T Consensus 228 LnrN~irive~ltFqgL~Sl~nlklqrN~-I~kL~DG~------------------------------------------ 264 (873)
T KOG4194|consen 228 LNRNRIRIVEGLTFQGLPSLQNLKLQRND-ISKLDDGA------------------------------------------ 264 (873)
T ss_pred ccccceeeehhhhhcCchhhhhhhhhhcC-cccccCcc------------------------------------------
Confidence 988764333 3467788888888887763 22222111
Q ss_pred CCCCCCccEEEEcCCCCchhhhhhccc-CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcC
Q 038861 958 GNLPQALKYLEVSYCSKLESLAERLDN-TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLT 1036 (1165)
Q Consensus 958 ~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 1036 (1165)
.....++++|++..|+....-..+.++ +.|+.|+|++|.+...-+.++...++|++|+|++|.+....+..|..+..|+
T Consensus 265 Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le 344 (873)
T KOG4194|consen 265 FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLE 344 (873)
T ss_pred eeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhh
Confidence 111256899999999877665555555 9999999999999988899999999999999999999999999999999999
Q ss_pred eEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC----CCCCCcceEEEecCCCCCcccccccccCCCCcEEEE
Q 038861 1037 KLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED----GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQI 1112 (1165)
Q Consensus 1037 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~----~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 1112 (1165)
+|.|++|.+...-...|.++++|++|||++|.+...+.+. ..+++|+.|++.+|++.. ++...|.++++|+.|||
T Consensus 345 ~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~-I~krAfsgl~~LE~LdL 423 (873)
T KOG4194|consen 345 ELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKS-IPKRAFSGLEALEHLDL 423 (873)
T ss_pred hhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeee-cchhhhccCcccceecC
Confidence 9999999988777788999999999999999998777654 558999999999999975 67777999999999999
Q ss_pred ecCCCCcccCCCCC-CcccEEEecCCC
Q 038861 1113 TGGCPVLLSSPWFP-ASLTVLHISYMP 1138 (1165)
Q Consensus 1113 ~~n~~~~~~~~~~~-~~L~~L~l~~~~ 1138 (1165)
.+|-+..+-...|. ..|+.|.+..-+
T Consensus 424 ~~NaiaSIq~nAFe~m~Lk~Lv~nSss 450 (873)
T KOG4194|consen 424 GDNAIASIQPNAFEPMELKELVMNSSS 450 (873)
T ss_pred CCCcceeecccccccchhhhhhhcccc
Confidence 99988877776653 377777776543
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.95 E-value=8.8e-32 Score=269.70 Aligned_cols=93 Identities=28% Similarity=0.412 Sum_probs=72.0
Q ss_pred eeccCccccccccccccCcccccccccCCCCccccCcccccCCCccEEeccCcchhccccccccCCCCcceeeccCCCCC
Q 038861 392 FSLWGYCNIFNLPNEIGNLRHLRFLNLSGTNIQILPESINSLYNLHTILLEDCRRLKKLCNDMGNLTKLHHLRNSNVHSL 471 (1165)
Q Consensus 392 l~l~~~~~l~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~ 471 (1165)
+.+..+ .+..+-+.+.++..|.+|++.+|++.++|++++++..++.|+.++| .+.++|..++.+.+|++|+.++|. .
T Consensus 50 lils~N-~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n~-~ 126 (565)
T KOG0472|consen 50 LILSHN-DLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSNE-L 126 (565)
T ss_pred hhhccC-chhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhccccc-e
Confidence 345555 6666667778888888888888888888888888888888888884 567788888888888888888887 7
Q ss_pred CCCCCCccccccccee
Q 038861 472 GEMPKGFGKLTCLLTL 487 (1165)
Q Consensus 472 ~~~p~~i~~L~~L~~L 487 (1165)
.++|++|+.+-+|+.+
T Consensus 127 ~el~~~i~~~~~l~dl 142 (565)
T KOG0472|consen 127 KELPDSIGRLLDLEDL 142 (565)
T ss_pred eecCchHHHHhhhhhh
Confidence 7777777766655554
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=3.2e-29 Score=251.44 Aligned_cols=177 Identities=24% Similarity=0.348 Sum_probs=135.8
Q ss_pred eeeccCccccccccccccCcccccccccCCCCccccCcccccCCCccEEeccCcchhccccccccCCCCcceeeccCCCC
Q 038861 391 VFSLWGYCNIFNLPNEIGNLRHLRFLNLSGTNIQILPESINSLYNLHTILLEDCRRLKKLCNDMGNLTKLHHLRNSNVHS 470 (1165)
Q Consensus 391 ~l~l~~~~~l~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~ 470 (1165)
|+...++ ++.++|.+++.+..++.|+.++|+++.+|+.++.+.+|+.|+.+.| ...++|++|+.+..|..|+..+|+
T Consensus 72 vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~dl~~~~N~- 148 (565)
T KOG0472|consen 72 VLNVHDN-KLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN-ELKELPDSIGRLLDLEDLDATNNQ- 148 (565)
T ss_pred EEEeccc-hhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc-ceeecCchHHHHhhhhhhhccccc-
Confidence 7888888 8999999999999999999999999999999999999999999985 567888999999999999999998
Q ss_pred CCCCCCCcccccccceeceEEeccccCCCccccCCccccccceeeccccCCCchhhhhHhhcCCCcCccceEeeeccccc
Q 038861 471 LGEMPKGFGKLTCLLTLGRFVVGKVSGSGLRELKSLTHLQETLRISKLENVKDVCDACEAQLNNKVNLKALLLEWSIWHV 550 (1165)
Q Consensus 471 ~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 550 (1165)
....|++++.+.+|..+.
T Consensus 149 i~slp~~~~~~~~l~~l~-------------------------------------------------------------- 166 (565)
T KOG0472|consen 149 ISSLPEDMVNLSKLSKLD-------------------------------------------------------------- 166 (565)
T ss_pred cccCchHHHHHHHHHHhh--------------------------------------------------------------
Confidence 788898888887766652
Q ss_pred cCccchhhHHhhhccCCCCcCcceEEEEeeCCCCCCcCcCCCCCCceeEEeEcccCCCCCCCCCCCCCCCceeeecCCCC
Q 038861 551 RNLDQCEFETRVLSMLKPYQDVQELTITGYGGPKFPIWLGDSSFSKLVRLKFEHCGTSTSLPSVGQLPFLKELVISGMGR 630 (1165)
Q Consensus 551 ~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~ 630 (1165)
+.++......+... .++.|++|+...|-.+.+|+.++. +.+|..|+|..|++ ..+|.|.+...|++|+++.| .
T Consensus 167 --~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~tlP~~lg~--l~~L~~LyL~~Nki-~~lPef~gcs~L~Elh~g~N-~ 239 (565)
T KOG0472|consen 167 --LEGNKLKALPENHI-AMKRLKHLDCNSNLLETLPPELGG--LESLELLYLRRNKI-RFLPEFPGCSLLKELHVGEN-Q 239 (565)
T ss_pred --ccccchhhCCHHHH-HHHHHHhcccchhhhhcCChhhcc--hhhhHHHHhhhccc-ccCCCCCccHHHHHHHhccc-H
Confidence 11222222112212 256677777777777778877764 77777777888776 34567777777888877666 4
Q ss_pred ceEeCcccc
Q 038861 631 VKSVGSEFY 639 (1165)
Q Consensus 631 ~~~~~~~~~ 639 (1165)
++.++.+..
T Consensus 240 i~~lpae~~ 248 (565)
T KOG0472|consen 240 IEMLPAEHL 248 (565)
T ss_pred HHhhHHHHh
Confidence 455554443
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=1.4e-26 Score=243.52 Aligned_cols=336 Identities=18% Similarity=0.193 Sum_probs=216.3
Q ss_pred CCccceeeecCCcccccCCCccccccceEEeecccccccccCCCCCceEEEEecCCcccccCccccccccccccccccee
Q 038861 677 FPKLRKLSLFSCSKLQGALPKRLLLLERLVIQSCKQLLVTIQCLPALSELQIKGCKRVVLSSPMDLSSLKSVLLGEMANE 756 (1165)
Q Consensus 677 ~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~~~l~~~ 756 (1165)
+|+|+.+++.+ |.++ .+|. ......+|+.|++.+ +.+..+...++..+..+..++++.|
T Consensus 101 l~nLq~v~l~~-N~Lt-~IP~------------------f~~~sghl~~L~L~~-N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 101 LPNLQEVNLNK-NELT-RIPR------------------FGHESGHLEKLDLRH-NLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred CCcceeeeecc-chhh-hccc------------------ccccccceeEEeeec-cccccccHHHHHhHhhhhhhhhhhc
Confidence 67777777766 6776 6663 223344577788777 5565566666777777777777777
Q ss_pred EeccCC--CccccCCcCceEecCCCCccccchhhcCCCCcceEEEcCCCCccccCCCC--CcccccEEEeccCCCCCCCh
Q 038861 757 VISGCP--QLLSLVTEDDLELSNCKGLTKLPQALLTLSSLRELRISGCASLVSFPQAA--LPSQLRTFKIEHCNALESLP 832 (1165)
Q Consensus 757 ~i~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~ 832 (1165)
.|+.++ .|..-.++++|++++|.+...-...|.++.+|..|.++.|.+. .+|... .++.|+.|++..|.+ +.+
T Consensus 160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~i-riv- 236 (873)
T KOG4194|consen 160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRI-RIV- 236 (873)
T ss_pred hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccce-eee-
Confidence 777663 5555567777777777777666667777777777777777543 333222 256677777666652 222
Q ss_pred HHHhhcCccccccccccceeecccccccCCchhhhcCCCCCcceEEEeCCCCCccc-cccCCccccceEeeccCcCcccc
Q 038861 833 EAWMRNSNSSLQSLEIGTIEIEECNALESLPEAWMQDSSTSLESLNIDGCDSLTYI-ARIQLPPSLRRLIISDCYNLRTL 911 (1165)
Q Consensus 833 ~~~~~~~~~~L~~l~l~~~~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~L~~L~l~~~~~l~~l 911 (1165)
..+ -++.+++|+.|.+..|++-.-- +.|..+.+++.|++..|. +..+
T Consensus 237 ------------------------e~l-------tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~-l~~v 284 (873)
T KOG4194|consen 237 ------------------------EGL-------TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR-LQAV 284 (873)
T ss_pred ------------------------hhh-------hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccch-hhhh
Confidence 111 1234666666777666544322 345566677777776663 2111
Q ss_pred cCCcCccccCCCCccccccCCCCcccccccceeecccccccccccCCCCCCCccEEEEcCCCCchhhhhhccc-Ccccee
Q 038861 912 TGDQGICSSRSGRTSLTSFSSENELPATLEQLEVRFCSNLAFLSRNGNLPQALKYLEVSYCSKLESLAERLDN-TSLEVI 990 (1165)
Q Consensus 912 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L 990 (1165)
..+ ++-.| .+|+.|++++|.+...-+..+.. ++|+.|
T Consensus 285 n~g------------------------~lfgL------------------t~L~~L~lS~NaI~rih~d~WsftqkL~~L 322 (873)
T KOG4194|consen 285 NEG------------------------WLFGL------------------TSLEQLDLSYNAIQRIHIDSWSFTQKLKEL 322 (873)
T ss_pred hcc------------------------ccccc------------------chhhhhccchhhhheeecchhhhcccceeE
Confidence 111 01111 44777777777766655555555 778888
Q ss_pred eeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCC---cccCCCCCCceeeeccC
Q 038861 991 AISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALP---NCMHNLTSLLHLEIGWC 1067 (1165)
Q Consensus 991 ~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~---~~~~~l~~L~~L~l~~n 1067 (1165)
+|++|.+....++.|..+.+|++|+|++|.+...--.+|..+++|++|||++|.+...+. ..|.++++|+.|.+.+|
T Consensus 323 dLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN 402 (873)
T KOG4194|consen 323 DLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN 402 (873)
T ss_pred eccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc
Confidence 888888877777777777888888888887666555667777788888888887765542 35677888888888888
Q ss_pred CCCcccCCC--CCCCCcceEEEecCCCCCcccccccccCCCCcEEEEe
Q 038861 1068 RSLVSFPED--GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQIT 1113 (1165)
Q Consensus 1068 ~~~~~~p~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 1113 (1165)
++ ..+|.. ..+.+|+.|+|.+|.|.. +.+..|..+ .|++|-+.
T Consensus 403 ql-k~I~krAfsgl~~LE~LdL~~NaiaS-Iq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 403 QL-KSIPKRAFSGLEALEHLDLGDNAIAS-IQPNAFEPM-ELKELVMN 447 (873)
T ss_pred ee-eecchhhhccCcccceecCCCCccee-ecccccccc-hhhhhhhc
Confidence 77 555544 667788888888888765 344457776 77777554
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=1.3e-27 Score=265.81 Aligned_cols=291 Identities=21% Similarity=0.182 Sum_probs=179.2
Q ss_pred ccccCCcCceEecCCCCccccchhhcCCCCcceEEEcCCCCccccCCCCCcccccEEEeccCCCCCCChHHHhhcCcccc
Q 038861 764 LLSLVTEDDLELSNCKGLTKLPQALLTLSSLRELRISGCASLVSFPQAALPSQLRTFKIEHCNALESLPEAWMRNSNSSL 843 (1165)
Q Consensus 764 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 843 (1165)
+..+..++.+....|.+.. ....-++|+.|+.++|+.. .......+.+|+++++++|. ...+|. |.. ...++
T Consensus 195 ls~~~~l~~l~c~rn~ls~----l~~~g~~l~~L~a~~n~l~-~~~~~p~p~nl~~~dis~n~-l~~lp~-wi~-~~~nl 266 (1081)
T KOG0618|consen 195 LSNLANLEVLHCERNQLSE----LEISGPSLTALYADHNPLT-TLDVHPVPLNLQYLDISHNN-LSNLPE-WIG-ACANL 266 (1081)
T ss_pred hhhccchhhhhhhhcccce----EEecCcchheeeeccCcce-eeccccccccceeeecchhh-hhcchH-HHH-hcccc
Confidence 3344445555555544322 1123578899999999766 44445567889999999988 455663 432 23567
Q ss_pred ccccccceeecccccccCCchhhhcCCCCCcceEEEeCCCCCccccccCCccccceEeeccCcCcccccCCcCccccCCC
Q 038861 844 QSLEIGTIEIEECNALESLPEAWMQDSSTSLESLNIDGCDSLTYIARIQLPPSLRRLIISDCYNLRTLTGDQGICSSRSG 923 (1165)
Q Consensus 844 ~~l~l~~~~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 923 (1165)
+.++...|++.... .... ...+|++|.+.+|..-...+......+|+.|++..|. +..++..+
T Consensus 267 e~l~~n~N~l~~lp------~ri~--~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~-------- 329 (1081)
T KOG0618|consen 267 EALNANHNRLVALP------LRIS--RITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNF-------- 329 (1081)
T ss_pred eEecccchhHHhhH------HHHh--hhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc-ccccchHH--------
Confidence 77777666663222 1111 1456777777776533333333446777777777763 22222110
Q ss_pred CccccccCCCCcccccccceeecccccccccccCCCCCCCccEEEEcCCCCchhhhhhcc--cCccceeeeecccccccC
Q 038861 924 RTSLTSFSSENELPATLEQLEVRFCSNLAFLSRNGNLPQALKYLEVSYCSKLESLAERLD--NTSLEVIAISYLENLKSL 1001 (1165)
Q Consensus 924 ~~~l~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~L~~L~L~~n~~~~~~ 1001 (1165)
+.. .+.+++.|+.+.|.. ...|.... .+.|+.|.+.+|.+....
T Consensus 330 ----------------l~v-----------------~~~~l~~ln~s~n~l-~~lp~~~e~~~~~Lq~LylanN~Ltd~c 375 (1081)
T KOG0618|consen 330 ----------------LAV-----------------LNASLNTLNVSSNKL-STLPSYEENNHAALQELYLANNHLTDSC 375 (1081)
T ss_pred ----------------Hhh-----------------hhHHHHHHhhhhccc-cccccccchhhHHHHHHHHhcCcccccc
Confidence 000 112245555555432 22332211 277888888888887777
Q ss_pred CcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCCCCCCC
Q 038861 1002 PAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPEDGFPTN 1081 (1165)
Q Consensus 1002 p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~ 1081 (1165)
...+.++++|+.|+|++|.+.......+.++..|++|+||||.+ +.+|..+..++.|++|...+|++ ..+|+...++.
T Consensus 376 ~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL-~~Lp~tva~~~~L~tL~ahsN~l-~~fPe~~~l~q 453 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKL-TTLPDTVANLGRLHTLRAHSNQL-LSFPELAQLPQ 453 (1081)
T ss_pred hhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchh-hhhhHHHHhhhhhHHHhhcCCce-eechhhhhcCc
Confidence 67778888888888888875555555677778888888888775 44667788888888888877777 66776677888
Q ss_pred cceEEEecCCCCCcccccccccCCCCcEEEEecCC
Q 038861 1082 LESLEVHDLKISKPLFEWGLNKFSSLRELQITGGC 1116 (1165)
Q Consensus 1082 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 1116 (1165)
|+.+|+|.|++.....++.... ++|++||++||-
T Consensus 454 L~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 454 LKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred ceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 8888888888775444332222 677777777764
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=5.2e-27 Score=261.02 Aligned_cols=457 Identities=22% Similarity=0.231 Sum_probs=278.7
Q ss_pred eeeccCccccccccccccCcccccccccCCCCccccCcccccCCCccEEeccCcchhccccccccCCCCcceeeccCCCC
Q 038861 391 VFSLWGYCNIFNLPNEIGNLRHLRFLNLSGTNIQILPESINSLYNLHTILLEDCRRLKKLCNDMGNLTKLHHLRNSNVHS 470 (1165)
Q Consensus 391 ~l~l~~~~~l~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~ 470 (1165)
+|+++.+ .+..+|..+..+.+|+.|+++.|.|...|.+++++.+|++|+|.+ +.+..+|.++..+++|++|++++|.
T Consensus 49 ~l~lsnn-~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~LdlS~N~- 125 (1081)
T KOG0618|consen 49 SLDLSNN-QISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQYLDLSFNH- 125 (1081)
T ss_pred Eeecccc-ccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc-chhhcCchhHHhhhcccccccchhc-
Confidence 6788888 888899999999999999999999999999999999999999986 6788899999999999999999998
Q ss_pred CCCCCCCcccccccceeceEEeccccCCCccccCCccccccceeeccccCCCchhhhhHhhcCCCcCccceEeeeccccc
Q 038861 471 LGEMPKGFGKLTCLLTLGRFVVGKVSGSGLRELKSLTHLQETLRISKLENVKDVCDACEAQLNNKVNLKALLLEWSIWHV 550 (1165)
Q Consensus 471 ~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 550 (1165)
...+|..+..++.+..+......+. ..+
T Consensus 126 f~~~Pl~i~~lt~~~~~~~s~N~~~--------~~l-------------------------------------------- 153 (1081)
T KOG0618|consen 126 FGPIPLVIEVLTAEEELAASNNEKI--------QRL-------------------------------------------- 153 (1081)
T ss_pred cCCCchhHHhhhHHHHHhhhcchhh--------hhh--------------------------------------------
Confidence 7888887777776655521111000 000
Q ss_pred cCccchhhHHhhhccCCCCcCcceEEEEeeC-CCCCCcCcCCCCCCceeEEeEcccCCCCCCCCCCCCCCCceeeecCCC
Q 038861 551 RNLDQCEFETRVLSMLKPYQDVQELTITGYG-GPKFPIWLGDSSFSKLVRLKFEHCGTSTSLPSVGQLPFLKELVISGMG 629 (1165)
Q Consensus 551 ~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~ 629 (1165)
+. ..++.+++..+. ...++..+.. +.+ .|+|.+|.+. ...+..+++|+.|....|.
T Consensus 154 -------------g~----~~ik~~~l~~n~l~~~~~~~i~~--l~~--~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ 210 (1081)
T KOG0618|consen 154 -------------GQ----TSIKKLDLRLNVLGGSFLIDIYN--LTH--QLDLRYNEME--VLDLSNLANLEVLHCERNQ 210 (1081)
T ss_pred -------------cc----ccchhhhhhhhhcccchhcchhh--hhe--eeecccchhh--hhhhhhccchhhhhhhhcc
Confidence 00 002233333222 1122222211 222 3666666654 2234455566666555553
Q ss_pred CceEeCccccCCCCccCCCCcceeeccccccccccccCCCCCcccCcCCccceeeecCCcccccCCCccccccceEEeec
Q 038861 630 RVKSVGSEFYGSSCSVPFPSLETLYFANMQEWEEWIPFGSGQEVDEVFPKLRKLSLFSCSKLQGALPKRLLLLERLVIQS 709 (1165)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~~~ 709 (1165)
...... + -++|+.|+..+|+-.+ ..+.
T Consensus 211 ls~l~~--------------------~--------------------g~~l~~L~a~~n~l~~-~~~~------------ 237 (1081)
T KOG0618|consen 211 LSELEI--------------------S--------------------GPSLTALYADHNPLTT-LDVH------------ 237 (1081)
T ss_pred cceEEe--------------------c--------------------CcchheeeeccCccee-eccc------------
Confidence 322211 0 1344444444422111 1110
Q ss_pred ccccccccCCCCCceEEEEecCCcccccCcccccccccccccccceeEeccCCC-ccccCCcCceEecCCCCccccchhh
Q 038861 710 CKQLLVTIQCLPALSELQIKGCKRVVLSSPMDLSSLKSVLLGEMANEVISGCPQ-LLSLVTEDDLELSNCKGLTKLPQAL 788 (1165)
Q Consensus 710 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~~~l~~~~i~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~ 788 (1165)
....+|+.++++. +.++.+|. ...+.+|+.+...+|.+ ..+|..+
T Consensus 238 --------p~p~nl~~~dis~-------------------------n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri 283 (1081)
T KOG0618|consen 238 --------PVPLNLQYLDISH-------------------------NNLSNLPEWIGACANLEALNANHNRL-VALPLRI 283 (1081)
T ss_pred --------cccccceeeecch-------------------------hhhhcchHHHHhcccceEecccchhH-HhhHHHH
Confidence 0112333333333 12222221 12344555555555554 5667777
Q ss_pred cCCCCcceEEEcCCCCccccCCC-CCcccccEEEeccCCCCCCChHHHhhcCccccccccccceeecccccccCCchhhh
Q 038861 789 LTLSSLRELRISGCASLVSFPQA-ALPSQLRTFKIEHCNALESLPEAWMRNSNSSLQSLEIGTIEIEECNALESLPEAWM 867 (1165)
Q Consensus 789 ~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~l~~l~~~~~ 867 (1165)
..+++|+.|.+..|.. ..+|+. ....+|++|++..|. +...|+.+......++..++.+.+.+...+..+
T Consensus 284 ~~~~~L~~l~~~~nel-~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~------- 354 (1081)
T KOG0618|consen 284 SRITSLVSLSAAYNEL-EYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYE------- 354 (1081)
T ss_pred hhhhhHHHHHhhhhhh-hhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhcccccccccc-------
Confidence 8888888888888844 444443 336788888888887 455555444332223333333322222111000
Q ss_pred cCCCCCcceEEEeCCCCCccccccCCccccceEeeccCcCcccccCCcCccccCCCCccccccCCCCcccccccceeecc
Q 038861 868 QDSSTSLESLNIDGCDSLTYIARIQLPPSLRRLIISDCYNLRTLTGDQGICSSRSGRTSLTSFSSENELPATLEQLEVRF 947 (1165)
Q Consensus 868 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~ 947 (1165)
T Consensus 355 -------------------------------------------------------------------------------- 354 (1081)
T KOG0618|consen 355 -------------------------------------------------------------------------------- 354 (1081)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccCCCCCCCccEEEEcCCCCchhhhh-hcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCcccc
Q 038861 948 CSNLAFLSRNGNLPQALKYLEVSYCSKLESLAE-RLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFP 1026 (1165)
Q Consensus 948 ~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~ 1026 (1165)
....+.|+.|++.+|........ .....+|++|+|+||.+.......+.++..|++|+|+||. +..+|
T Consensus 355 ----------e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp 423 (1081)
T KOG0618|consen 355 ----------ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LTTLP 423 (1081)
T ss_pred ----------chhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch-hhhhh
Confidence 00002355666666655443333 3333888888888888844444457889999999999998 66677
Q ss_pred CCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCCCCC-CCcceEEEecCCCCCcccccccccCC
Q 038861 1027 EGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPEDGFP-TNLESLEVHDLKISKPLFEWGLNKFS 1105 (1165)
Q Consensus 1027 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~ 1105 (1165)
.....++.|++|...+|.+.. .| .+..+++|+.+|+|.|++....-....+ ++|++||+++|.... .....|..+.
T Consensus 424 ~tva~~~~L~tL~ahsN~l~~-fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~-~d~~~l~~l~ 500 (1081)
T KOG0618|consen 424 DTVANLGRLHTLRAHSNQLLS-FP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLV-FDHKTLKVLK 500 (1081)
T ss_pred HHHHhhhhhHHHhhcCCceee-ch-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccc-cchhhhHHhh
Confidence 888999999999999988755 56 6889999999999999986544333344 899999999998532 3344466677
Q ss_pred CCcEEEEecC
Q 038861 1106 SLRELQITGG 1115 (1165)
Q Consensus 1106 ~L~~L~l~~n 1115 (1165)
++...+++-+
T Consensus 501 ~l~~~~i~~~ 510 (1081)
T KOG0618|consen 501 SLSQMDITLN 510 (1081)
T ss_pred hhhheecccC
Confidence 7777776644
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=2.5e-22 Score=255.07 Aligned_cols=119 Identities=21% Similarity=0.296 Sum_probs=82.7
Q ss_pred ccCCCCCceEEEEecCC-----cccccCcccccccc-cccccccceeEeccCCCccccCCcCceEecCCCCccccchhhc
Q 038861 716 TIQCLPALSELQIKGCK-----RVVLSSPMDLSSLK-SVLLGEMANEVISGCPQLLSLVTEDDLELSNCKGLTKLPQALL 789 (1165)
Q Consensus 716 ~~~~l~~L~~L~l~~~~-----~l~~~~~~~~~~l~-~l~~~~l~~~~i~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 789 (1165)
.|..+++|+.|.+..+. ......|..|..++ .++.+.+.++.+..+|......+|+.|++.+|.+ ..++..+.
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l-~~L~~~~~ 631 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKL-EKLWDGVH 631 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccc-cccccccc
Confidence 35566677777665421 12223344444443 3666666667777776555677888899988774 45677778
Q ss_pred CCCCcceEEEcCCCCccccCCCCCcccccEEEeccCCCCCCChHHH
Q 038861 790 TLSSLRELRISGCASLVSFPQAALPSQLRTFKIEHCNALESLPEAW 835 (1165)
Q Consensus 790 ~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 835 (1165)
.+++|+.|++++|..+..+|....+++|++|++++|..+..+|..+
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si 677 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSI 677 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhh
Confidence 8889999999888777778877778889999999888777777544
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=5e-24 Score=225.60 Aligned_cols=365 Identities=19% Similarity=0.266 Sum_probs=205.8
Q ss_pred cCCccceeeecCCcccc-cCCCccccccceEEeecccccccccCCCCCceEEEEecCCcccccCcccccccccccccccc
Q 038861 676 VFPKLRKLSLFSCSKLQ-GALPKRLLLLERLVIQSCKQLLVTIQCLPALSELQIKGCKRVVLSSPMDLSSLKSVLLGEMA 754 (1165)
Q Consensus 676 ~~~~L~~L~l~~c~~l~-~~~p~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~~~l~ 754 (1165)
.+|-.+-+++++ |.++ +.+|..+..++. ++-|.+.. .. ....|..++.+..|..+++.
T Consensus 5 VLpFVrGvDfsg-NDFsg~~FP~~v~qMt~------------------~~WLkLnr-t~-L~~vPeEL~~lqkLEHLs~~ 63 (1255)
T KOG0444|consen 5 VLPFVRGVDFSG-NDFSGDRFPHDVEQMTQ------------------MTWLKLNR-TK-LEQVPEELSRLQKLEHLSMA 63 (1255)
T ss_pred ccceeecccccC-CcCCCCcCchhHHHhhh------------------eeEEEech-hh-hhhChHHHHHHhhhhhhhhh
Confidence 366677777777 5565 467764444333 33333332 11 11234444555555555555
Q ss_pred eeEeccC-CCccccCCcCceEecCCCCcc-ccchhhcCCCCcceEEEcCCCCccccC-CCCCcccccEEEeccCCCCCCC
Q 038861 755 NEVISGC-PQLLSLVTEDDLELSNCKGLT-KLPQALLTLSSLRELRISGCASLVSFP-QAALPSQLRTFKIEHCNALESL 831 (1165)
Q Consensus 755 ~~~i~~~-~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~ 831 (1165)
+|.+..+ ..++.++.|+.+.++.|++.. .+|..+..+..|+.|++++|+. ..+| ......++-.|++|+|+ ++.+
T Consensus 64 HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL-~EvP~~LE~AKn~iVLNLS~N~-IetI 141 (1255)
T KOG0444|consen 64 HNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQL-REVPTNLEYAKNSIVLNLSYNN-IETI 141 (1255)
T ss_pred hhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhh-hhcchhhhhhcCcEEEEcccCc-cccC
Confidence 5555444 456777788888888777543 4677788888888888888854 3344 33445677788888887 4445
Q ss_pred hHHHhhcCccccccccccceeecccccccCCchhhhcCCCCCcceEEEeCCCCCcc-ccccCCccccceEeeccCcCccc
Q 038861 832 PEAWMRNSNSSLQSLEIGTIEIEECNALESLPEAWMQDSSTSLESLNIDGCDSLTY-IARIQLPPSLRRLIISDCYNLRT 910 (1165)
Q Consensus 832 ~~~~~~~~~~~L~~l~l~~~~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~-~~~~~~~~~L~~L~l~~~~~l~~ 910 (1165)
|...+.. ...|-+|+|++|++. .+|+.. ..+..|++|.|++|+..-. +.....+.
T Consensus 142 Pn~lfin-LtDLLfLDLS~NrLe------~LPPQ~--RRL~~LqtL~Ls~NPL~hfQLrQLPsmt--------------- 197 (1255)
T KOG0444|consen 142 PNSLFIN-LTDLLFLDLSNNRLE------MLPPQI--RRLSMLQTLKLSNNPLNHFQLRQLPSMT--------------- 197 (1255)
T ss_pred CchHHHh-hHhHhhhccccchhh------hcCHHH--HHHhhhhhhhcCCChhhHHHHhcCccch---------------
Confidence 5433221 233444444443332 223221 1244455555555442110 01111122
Q ss_pred ccCCcCccccCCCCccccccCCCCcccccccceeecccccccccccCCCCCCCccEEEEcCCCC-chhhhhhccc-Cccc
Q 038861 911 LTGDQGICSSRSGRTSLTSFSSENELPATLEQLEVRFCSNLAFLSRNGNLPQALKYLEVSYCSK-LESLAERLDN-TSLE 988 (1165)
Q Consensus 911 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~-~~L~ 988 (1165)
+|..|.+++... +..+|..+.. .+|.
T Consensus 198 ----------------------------------------------------sL~vLhms~TqRTl~N~Ptsld~l~NL~ 225 (1255)
T KOG0444|consen 198 ----------------------------------------------------SLSVLHMSNTQRTLDNIPTSLDDLHNLR 225 (1255)
T ss_pred ----------------------------------------------------hhhhhhcccccchhhcCCCchhhhhhhh
Confidence 233344443322 1122322222 5555
Q ss_pred eeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCC
Q 038861 989 VIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCR 1068 (1165)
Q Consensus 989 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 1068 (1165)
.+|+|.|.+ ..+|..+-.+++|+.|+|++|.+.+. ..+...-.+|++|++|+|++ ..+|..+..++.|+.|.+.+|+
T Consensus 226 dvDlS~N~L-p~vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQL-t~LP~avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 226 DVDLSENNL-PIVPECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQL-TVLPDAVCKLTKLTKLYANNNK 302 (1255)
T ss_pred hccccccCC-CcchHHHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchh-ccchHHHhhhHHHHHHHhccCc
Confidence 666666655 45567777777777777777775442 23344445777777777775 4467777777777777777776
Q ss_pred CC-cccCCC-CCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCCCCcccCC-CCCCcccEEEecCCCCcccHH
Q 038861 1069 SL-VSFPED-GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCPVLLSSP-WFPASLTVLHISYMPNLESLS 1144 (1165)
Q Consensus 1069 ~~-~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~~~~l~~l~ 1144 (1165)
+. .-+|.. +.+.+|+.+..++|.+. +.++++..+++|+.|.|+.|..-.++.. .+.+.|+.||+..||++..-|
T Consensus 303 L~FeGiPSGIGKL~~Levf~aanN~LE--lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 303 LTFEGIPSGIGKLIQLEVFHAANNKLE--LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ccccCCccchhhhhhhHHHHhhccccc--cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 53 234554 77777777777777763 2344577777777777776644333322 356677777777777765543
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=2.2e-23 Score=220.82 Aligned_cols=362 Identities=19% Similarity=0.255 Sum_probs=232.2
Q ss_pred eeccCcccc--ccccccccCcccccccccCCCCccccCcccccCCCccEEeccCcchhccccccccCCCCcceeeccCCC
Q 038861 392 FSLWGYCNI--FNLPNEIGNLRHLRFLNLSGTNIQILPESINSLYNLHTILLEDCRRLKKLCNDMGNLTKLHHLRNSNVH 469 (1165)
Q Consensus 392 l~l~~~~~l--~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 469 (1165)
.|++++ .+ ..+|.+...|+.++.|.|..+++..+|+.++.|++|++|.+.+|. +..+..+++.|+.||.+++..|+
T Consensus 12 vDfsgN-DFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~-L~~vhGELs~Lp~LRsv~~R~N~ 89 (1255)
T KOG0444|consen 12 VDFSGN-DFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQ-LISVHGELSDLPRLRSVIVRDNN 89 (1255)
T ss_pred ccccCC-cCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhh-hHhhhhhhccchhhHHHhhhccc
Confidence 456666 33 358888888888899988888888888888888899998888865 44556778888888888888887
Q ss_pred C-CCCCCCCcccccccceeceEEeccccCCCccccCCccccccceeeccccCCCchhhhhHhhcCCCcCccceEeeeccc
Q 038861 470 S-LGEMPKGFGKLTCLLTLGRFVVGKVSGSGLRELKSLTHLQETLRISKLENVKDVCDACEAQLNNKVNLKALLLEWSIW 548 (1165)
Q Consensus 470 ~-~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 548 (1165)
. ...+|.+|..|..|.+|+
T Consensus 90 LKnsGiP~diF~l~dLt~lD------------------------------------------------------------ 109 (1255)
T KOG0444|consen 90 LKNSGIPTDIFRLKDLTILD------------------------------------------------------------ 109 (1255)
T ss_pred cccCCCCchhcccccceeee------------------------------------------------------------
Confidence 3 245777788777777662
Q ss_pred cccCccchhhHHhhhccCCCCcCcceEEEEeeCCCCCCcCcCCCCCCceeEEeEcccCCCCCCCCCCCCCCCceeeecCC
Q 038861 549 HVRNLDQCEFETRVLSMLKPYQDVQELTITGYGGPKFPIWLGDSSFSKLVRLKFEHCGTSTSLPSVGQLPFLKELVISGM 628 (1165)
Q Consensus 549 ~~~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~ 628 (1165)
++.+++.+ ++..+..-.++-.|+|++|.+..+|..++. .+..|-.|+|++|.+....|....+..|+.|+|++|
T Consensus 110 ----LShNqL~E-vP~~LE~AKn~iVLNLS~N~IetIPn~lfi-nLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 110 ----LSHNQLRE-VPTNLEYAKNSIVLNLSYNNIETIPNSLFI-NLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNN 183 (1255)
T ss_pred ----cchhhhhh-cchhhhhhcCcEEEEcccCccccCCchHHH-hhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCC
Confidence 33333332 344555566777888888888888887663 567778888888887665556888888888888888
Q ss_pred CCceEeCccccCCCCccCCCCcceeeccccccccccccCCCCCcccCcCCccceeeecCCcccccCCCccccccceEEee
Q 038861 629 GRVKSVGSEFYGSSCSVPFPSLETLYFANMQEWEEWIPFGSGQEVDEVFPKLRKLSLFSCSKLQGALPKRLLLLERLVIQ 708 (1165)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~~ 708 (1165)
+........ +|+ |.+|+.|.+++..+-...+|.
T Consensus 184 PL~hfQLrQ---------LPs---------------------------mtsL~vLhms~TqRTl~N~Pt----------- 216 (1255)
T KOG0444|consen 184 PLNHFQLRQ---------LPS---------------------------MTSLSVLHMSNTQRTLDNIPT----------- 216 (1255)
T ss_pred hhhHHHHhc---------Ccc---------------------------chhhhhhhcccccchhhcCCC-----------
Confidence 643322111 121 333344444332221112222
Q ss_pred cccccccccCCCCCceEEEEecCCcccccCcccccccccccccccceeEeccCCC-ccccCCcCceEecCCCCccccchh
Q 038861 709 SCKQLLVTIQCLPALSELQIKGCKRVVLSSPMDLSSLKSVLLGEMANEVISGCPQ-LLSLVTEDDLELSNCKGLTKLPQA 787 (1165)
Q Consensus 709 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~~~l~~~~i~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~ 787 (1165)
++..+.+|..++++.|+ + ...|..+-.+.+|..+++++|.|+.+.. .....++++|++++|+ ++.+|++
T Consensus 217 -------sld~l~NL~dvDlS~N~-L-p~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~a 286 (1255)
T KOG0444|consen 217 -------SLDDLHNLRDVDLSENN-L-PIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTVLPDA 286 (1255)
T ss_pred -------chhhhhhhhhccccccC-C-CcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-hccchHH
Confidence 33334444444444422 1 1233444445555555555566666543 2334577888888887 4577888
Q ss_pred hcCCCCcceEEEcCCCCc-cccCC-CCCcccccEEEeccCCCCCCChHHHhhcCccccccccccceeecccccccCCchh
Q 038861 788 LLTLSSLRELRISGCASL-VSFPQ-AALPSQLRTFKIEHCNALESLPEAWMRNSNSSLQSLEIGTIEIEECNALESLPEA 865 (1165)
Q Consensus 788 ~~~l~~L~~L~l~~~~~l-~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~l~~l~~~ 865 (1165)
+..++.|+.|++.+|+.. ..+|+ .+-+.+|+.+..++|. ++.+|.....+ ..|+.|.|..|++... |..
T Consensus 287 vcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPEglcRC--~kL~kL~L~~NrLiTL------Pea 357 (1255)
T KOG0444|consen 287 VCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPEGLCRC--VKLQKLKLDHNRLITL------PEA 357 (1255)
T ss_pred HhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccCchhhhhh--HHHHHhcccccceeec------hhh
Confidence 888888888888888543 22332 2345677787777776 67778766433 5666676666554433 332
Q ss_pred hhcCCCCCcceEEEeCCCCCcccc
Q 038861 866 WMQDSSTSLESLNIDGCDSLTYIA 889 (1165)
Q Consensus 866 ~~~~~l~~L~~L~l~~~~~l~~~~ 889 (1165)
+. -++.|+.|++..|+.+-..|
T Consensus 358 IH--lL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 358 IH--LLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hh--hcCCcceeeccCCcCccCCC
Confidence 22 26778888888877766554
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.72 E-value=4.1e-19 Score=179.27 Aligned_cols=93 Identities=20% Similarity=0.290 Sum_probs=66.2
Q ss_pred eeccCccccccccccccCcccccccccCCCCccccCc-ccccCCCccEEeccCcchhccccccccCCCCcceeeccCCCC
Q 038861 392 FSLWGYCNIFNLPNEIGNLRHLRFLNLSGTNIQILPE-SINSLYNLHTILLEDCRRLKKLCNDMGNLTKLHHLRNSNVHS 470 (1165)
Q Consensus 392 l~l~~~~~l~~lp~~~~~l~~Lr~L~L~~~~i~~lp~-~~~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~ 470 (1165)
.+.++. +++++|..+ -..-..++|..|.|+.||+ .|+.+++||.|||++|.+..+-|.+|..|.+|..|-+.+++.
T Consensus 51 VdCr~~-GL~eVP~~L--P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 51 VDCRGK-GLTEVPANL--PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred EEccCC-CcccCcccC--CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 445554 677777655 2344667777888888865 677888888888888877777788888888888777766444
Q ss_pred CCCCCCC-ccccccccee
Q 038861 471 LGEMPKG-FGKLTCLLTL 487 (1165)
Q Consensus 471 ~~~~p~~-i~~L~~L~~L 487 (1165)
+..+|.+ |+.|..|+-|
T Consensus 128 I~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred hhhhhhhHhhhHHHHHHH
Confidence 7777765 6677766666
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=2.6e-15 Score=175.39 Aligned_cols=261 Identities=26% Similarity=0.235 Sum_probs=156.3
Q ss_pred CceEecCCCCccccchhhcCCCCcceEEEcCCCCccccCCCCCcccccEEEeccCCCCCCChHHHhhcCccccccccccc
Q 038861 771 DDLELSNCKGLTKLPQALLTLSSLRELRISGCASLVSFPQAALPSQLRTFKIEHCNALESLPEAWMRNSNSSLQSLEIGT 850 (1165)
Q Consensus 771 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~l~~ 850 (1165)
..|++++|.+. .+|..+. ++|+.|++++|. +..+|. .+++|++|++++|.+. .+|.
T Consensus 204 ~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~-Lt~LP~--lp~~Lk~LdLs~N~Lt-sLP~----------------- 259 (788)
T PRK15387 204 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNN-LTSLPA--LPPELRTLEVSGNQLT-SLPV----------------- 259 (788)
T ss_pred cEEEcCCCCCC-cCCcchh--cCCCEEEccCCc-CCCCCC--CCCCCcEEEecCCccC-cccC-----------------
Confidence 45777777544 5666554 367777877774 344543 3567777777777533 3331
Q ss_pred eeecccccccCCchhhhcCCCCCcceEEEeCCCCCccccccCCccccceEeeccCcCcccccCCcCccccCCCCcccccc
Q 038861 851 IEIEECNALESLPEAWMQDSSTSLESLNIDGCDSLTYIARIQLPPSLRRLIISDCYNLRTLTGDQGICSSRSGRTSLTSF 930 (1165)
Q Consensus 851 ~~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~ 930 (1165)
..++|++|++++|. +..++. .+.+|+.|++++|. +..++
T Consensus 260 -------------------lp~sL~~L~Ls~N~-L~~Lp~--lp~~L~~L~Ls~N~-Lt~LP------------------ 298 (788)
T PRK15387 260 -------------------LPPGLLELSIFSNP-LTHLPA--LPSGLCKLWIFGNQ-LTSLP------------------ 298 (788)
T ss_pred -------------------cccccceeeccCCc-hhhhhh--chhhcCEEECcCCc-ccccc------------------
Confidence 03467777777765 233332 34567777766652 21111
Q ss_pred CCCCcccccccceeecccccccccccCCCCCCCccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCCCC
Q 038861 931 SSENELPATLEQLEVRFCSNLAFLSRNGNLPQALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNLHH 1010 (1165)
Q Consensus 931 ~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~ 1010 (1165)
..|++|+.|++++|.+.+ +|.. ..+|+.|++++|.+.+ +|.. .++
T Consensus 299 ----------------------------~~p~~L~~LdLS~N~L~~-Lp~l--p~~L~~L~Ls~N~L~~-LP~l---p~~ 343 (788)
T PRK15387 299 ----------------------------VLPPGLQELSVSDNQLAS-LPAL--PSELCKLWAYNNQLTS-LPTL---PSG 343 (788)
T ss_pred ----------------------------ccccccceeECCCCcccc-CCCC--cccccccccccCcccc-cccc---ccc
Confidence 123568888888885543 4431 2567788888877743 4431 246
Q ss_pred CCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCCCCCCCcceEEEecC
Q 038861 1011 LQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPEDGFPTNLESLEVHDL 1090 (1165)
Q Consensus 1011 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n 1090 (1165)
|++|+|++|.+.+ +|.. .++|+.|++++|.+.. +|.. ..+|+.|++++|++. .+|. .+++|+.|++++|
T Consensus 344 Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~--l~s~L~~LdLS~N 412 (788)
T PRK15387 344 LQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPV--LPSELKELMVSGN 412 (788)
T ss_pred cceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCC--cccCCCEEEccCC
Confidence 7888888887554 4432 2467778888877654 4542 356788888888773 4554 3467888888888
Q ss_pred CCCCcccccccccCCCCcEEEEecCCCCcccCCC-CCCcccEEEecCCCCcccHHHhh
Q 038861 1091 KISKPLFEWGLNKFSSLRELQITGGCPVLLSSPW-FPASLTVLHISYMPNLESLSLIV 1147 (1165)
Q Consensus 1091 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~L~~L~l~~~~~l~~l~~~~ 1147 (1165)
++.+ +|. ...+|+.|++++|.+..++... -.++|+.|++++|+.-...+..+
T Consensus 413 ~Lss-IP~----l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 413 RLTS-LPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred cCCC-CCc----chhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 8765 332 1245777788877766554321 24577778888777655544433
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.60 E-value=5.7e-15 Score=172.59 Aligned_cols=256 Identities=23% Similarity=0.224 Sum_probs=155.4
Q ss_pred ccccceeEeccCCCccccCCcCceEecCCCCccccchhhcCCCCcceEEEcCCCCccccCCCCCcccccEEEeccCCCCC
Q 038861 750 LGEMANEVISGCPQLLSLVTEDDLELSNCKGLTKLPQALLTLSSLRELRISGCASLVSFPQAALPSQLRTFKIEHCNALE 829 (1165)
Q Consensus 750 ~~~l~~~~i~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~ 829 (1165)
.++++.+.++.+|.-. ..+++.|++.+|++. .+|. ..++|++|++++|. +..+|. .+++|+.|++++|.+ .
T Consensus 205 ~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~-LtsLP~--lp~sL~~L~Ls~N~L-~ 275 (788)
T PRK15387 205 VLNVGESGLTTLPDCL-PAHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQ-LTSLPV--LPPGLLELSIFSNPL-T 275 (788)
T ss_pred EEEcCCCCCCcCCcch-hcCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCc-cCcccC--cccccceeeccCCch-h
Confidence 4567777777776421 247899999998765 4664 36899999999994 455664 468999999999984 3
Q ss_pred CChHHHhhcCccccccccccceeecccccccCCchhhhcCCCCCcceEEEeCCCCCccccccCCccccceEeeccCcCcc
Q 038861 830 SLPEAWMRNSNSSLQSLEIGTIEIEECNALESLPEAWMQDSSTSLESLNIDGCDSLTYIARIQLPPSLRRLIISDCYNLR 909 (1165)
Q Consensus 830 ~~~~~~~~~~~~~L~~l~l~~~~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~ 909 (1165)
.+|.. ..+|+.|+++.|.+...+. .+++|+.|++++|... .++. .+.+|+.|.+++|. +.
T Consensus 276 ~Lp~l-----p~~L~~L~Ls~N~Lt~LP~-----------~p~~L~~LdLS~N~L~-~Lp~--lp~~L~~L~Ls~N~-L~ 335 (788)
T PRK15387 276 HLPAL-----PSGLCKLWIFGNQLTSLPV-----------LPPGLQELSVSDNQLA-SLPA--LPSELCKLWAYNNQ-LT 335 (788)
T ss_pred hhhhc-----hhhcCEEECcCCccccccc-----------cccccceeECCCCccc-cCCC--CcccccccccccCc-cc
Confidence 44431 1345555555554443221 1345666666665322 2221 23344445444431 11
Q ss_pred cccCCcCccccCCCCccccccCCCCcccccccceeecccccccccccCCCCCCCccEEEEcCCCCchhhhhhcccCccce
Q 038861 910 TLTGDQGICSSRSGRTSLTSFSSENELPATLEQLEVRFCSNLAFLSRNGNLPQALKYLEVSYCSKLESLAERLDNTSLEV 989 (1165)
Q Consensus 910 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 989 (1165)
.+ ..+|.+|+.|++++|.+. .+|.. ..+|+.
T Consensus 336 ~L----------------------------------------------P~lp~~Lq~LdLS~N~Ls-~LP~l--p~~L~~ 366 (788)
T PRK15387 336 SL----------------------------------------------PTLPSGLQELSVSDNQLA-SLPTL--PSELYK 366 (788)
T ss_pred cc----------------------------------------------cccccccceEecCCCccC-CCCCC--Ccccce
Confidence 00 113356778888877544 34432 256777
Q ss_pred eeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCC
Q 038861 990 IAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRS 1069 (1165)
Q Consensus 990 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 1069 (1165)
|++++|.+.. +|.. .++|+.|++++|.+.+ +|.. .++|+.|++++|.+.. +|.. ..+|+.|++++|++
T Consensus 367 L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqL 434 (788)
T PRK15387 367 LWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQL 434 (788)
T ss_pred ehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCcc
Confidence 7777777653 5543 2467777887777553 4432 2467777888777654 4542 24567777777777
Q ss_pred CcccCCC-CCCCCcceEEEecCCCCCcc
Q 038861 1070 LVSFPED-GFPTNLESLEVHDLKISKPL 1096 (1165)
Q Consensus 1070 ~~~~p~~-~~~~~L~~L~l~~n~~~~~~ 1096 (1165)
..+|.. ..+++|+.|++++|++++..
T Consensus 435 -t~LP~sl~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 435 -TRLPESLIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred -cccChHHhhccCCCeEECCCCCCCchH
Confidence 456655 66777777778777777644
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.54 E-value=2.4e-16 Score=159.52 Aligned_cols=173 Identities=20% Similarity=0.126 Sum_probs=115.1
Q ss_pred CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeee
Q 038861 985 TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEI 1064 (1165)
Q Consensus 985 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 1064 (1165)
++|++|+|++|++..+-+.+|.++..+++|+|..|++-..-...|.++..|+.|+|.+|+++...|..|..+.+|.+|+|
T Consensus 274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL 353 (498)
T ss_pred ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeeh
Confidence 88888888888888888888888888888888888866555667778888888888888888888888888888888888
Q ss_pred ccCCCC-----------------cccCCCCCCCCcceEEEecCCCCCc---cccccccc---------CC----------
Q 038861 1065 GWCRSL-----------------VSFPEDGFPTNLESLEVHDLKISKP---LFEWGLNK---------FS---------- 1105 (1165)
Q Consensus 1065 ~~n~~~-----------------~~~p~~~~~~~L~~L~l~~n~~~~~---~~~~~~~~---------l~---------- 1105 (1165)
-.|++. ...|.-+.+..++.+.++++.+... .+++ ... ++
T Consensus 354 ~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee-~~~~~s~~cP~~c~c~~tVvRcSn 432 (498)
T KOG4237|consen 354 LSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEE-LGCLTSSPCPPPCTCLDTVVRCSN 432 (498)
T ss_pred ccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccc-cCCCCCCCCCCCcchhhhhHhhcc
Confidence 877752 1122225566777777776655321 0100 000 00
Q ss_pred ------------CCcEEEEecCCCCcccCCCCCCcccEEEecCCCCcccHH-HhhhcCCccceEeecCC
Q 038861 1106 ------------SLRELQITGGCPVLLSSPWFPASLTVLHISYMPNLESLS-LIVENLTSLEILILCKC 1161 (1165)
Q Consensus 1106 ------------~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c 1161 (1165)
.-.+|++.||.+..++.. ...+| .+|+++|+ +..+. -.|.++++|.+|.++.+
T Consensus 433 k~lk~lp~~iP~d~telyl~gn~~~~vp~~-~~~~l-~~dls~n~-i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 433 KLLKLLPRGIPVDVTELYLDGNAITSVPDE-LLRSL-LLDLSNNR-ISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred cchhhcCCCCCchhHHHhcccchhcccCHH-HHhhh-hcccccCc-eehhhcccccchhhhheeEEecC
Confidence 123445556555544433 33456 77888755 44443 33677778888877653
No 19
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.52 E-value=6.4e-13 Score=169.80 Aligned_cols=275 Identities=16% Similarity=0.208 Sum_probs=174.4
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcC-CCCHHHHHHHHHHhccCCCCC-------------CCC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSE-DFDVFRVTKSILMSISNVTVN-------------DND 89 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~-~~~~~~~~~~i~~~l~~~~~~-------------~~~ 89 (1165)
..+++.|+|++|.||||++.++... ++.++|+++.. +.++..+...++..+...... ..+
T Consensus 31 ~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 104 (903)
T PRK04841 31 NYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYAS 104 (903)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCC
Confidence 4679999999999999999998742 22688999874 456677777777766421111 012
Q ss_pred HHHHHHHHHHHhc--CceEEEEEeCCCCCCccchh-hhhcccCCCCCCcEEEEecCchHHH--Hhhc-ccceeeCC----
Q 038861 90 LNSLQEKLEKELI--KKKFLLVLDDMWNENYNDWE-LLNRPFKAGTSGSKIIVTTRNRVVA--ERVG-SVREYPLG---- 159 (1165)
Q Consensus 90 ~~~~~~~l~~~l~--~~~~LlvlDdv~~~~~~~~~-~l~~~~~~~~~~~~iiiTtR~~~~~--~~~~-~~~~~~l~---- 159 (1165)
.......+...+. +++++||+||++..+..... .+...+....++.++|||||..... ..+. .....++.
T Consensus 105 ~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l 184 (903)
T PRK04841 105 LSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQL 184 (903)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhC
Confidence 2223333333332 67999999999776533333 3323333345677899999984211 1111 12244555
Q ss_pred CCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHhhhcCCCChhHHHHHHhccccccCC-CCCCh
Q 038861 160 ELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLGGLLRGKHDPKDWEIVLNADVWDFAD-DGCDI 238 (1165)
Q Consensus 160 ~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~~~~~~~~~~~-~~~~~ 238 (1165)
+|+.+|+.++|....... -..+.+.+|++.|+|+|+++..++..+........ ... +.... ....+
T Consensus 185 ~f~~~e~~~ll~~~~~~~-------~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~--~~~----~~~~~~~~~~~ 251 (903)
T PRK04841 185 AFDHQEAQQFFDQRLSSP-------IEAAESSRLCDDVEGWATALQLIALSARQNNSSLH--DSA----RRLAGINASHL 251 (903)
T ss_pred CCCHHHHHHHHHhccCCC-------CCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchh--hhh----HhhcCCCchhH
Confidence 999999999998653221 11266788999999999999999887754422100 000 11111 11235
Q ss_pred hHHHH-hccccCcHHHHhHhhhhcCCCCCCccChHHHHHHHHHcCCcccccCcccHHHHHHHHHHHHHHcCcccc-ccCC
Q 038861 239 IPALK-VSYRFLPPQLKQCFAYCSLFPKDYEFEEEEIILLWTAEGFLDQECDGRKMEELGREFVRELHSRSLFHQ-SSKD 316 (1165)
Q Consensus 239 ~~~l~-~sy~~L~~~~k~~fl~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~li~~-~~~~ 316 (1165)
...+. ..|+.||++.++.++..|+++ .++.+..-.. ... +.+.+.+++|.+.+++.. .+++
T Consensus 252 ~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l------~~~--------~~~~~~L~~l~~~~l~~~~~~~~ 314 (903)
T PRK04841 252 SDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVRV------TGE--------ENGQMRLEELERQGLFIQRMDDS 314 (903)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHHH------cCC--------CcHHHHHHHHHHCCCeeEeecCC
Confidence 55443 348899999999999999996 3343322211 111 124677999999999754 3444
Q ss_pred CCeEEEehHHHHHHHHhc
Q 038861 317 ASRFVMHSLINDLARWAA 334 (1165)
Q Consensus 317 ~~~~~~H~li~~~~~~~~ 334 (1165)
..+|.+|++++++++...
T Consensus 315 ~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 315 GEWFRYHPLFASFLRHRC 332 (903)
T ss_pred CCEEehhHHHHHHHHHHH
Confidence 568999999999998765
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.44 E-value=2.3e-13 Score=160.69 Aligned_cols=161 Identities=23% Similarity=0.250 Sum_probs=90.5
Q ss_pred CCccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEee
Q 038861 962 QALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIG 1041 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 1041 (1165)
.+|+.|++++|.+. .+|..+. ++|+.|++++|.+.+ +|..+. ++|+.|++++|.+.. +|..+. ++|+.|+++
T Consensus 262 s~L~~L~Ls~N~L~-~LP~~l~-~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls 333 (754)
T PRK15370 262 SALQSLDLFHNKIS-CLPENLP-EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETLP--PGLKTLEAG 333 (754)
T ss_pred CCCCEEECcCCccC-ccccccC-CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCcccc--ccceecccc
Confidence 45777777766443 4444322 467777777776643 444332 367777777776543 343332 467777777
Q ss_pred cCCCCCcCCcccCCCCCCceeeeccCCCCcccCCCCCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCCCCccc
Q 038861 1042 YCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPEDGFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCPVLLS 1121 (1165)
Q Consensus 1042 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 1121 (1165)
+|.+.. +|..+. ++|+.|++++|++ ..+|.. .+++|+.|++++|++.. +|+. +. .+|+.|++++|....++
T Consensus 334 ~N~Lt~-LP~~l~--~sL~~L~Ls~N~L-~~LP~~-lp~~L~~LdLs~N~Lt~-LP~~-l~--~sL~~LdLs~N~L~~LP 404 (754)
T PRK15370 334 ENALTS-LPASLP--PELQVLDVSKNQI-TVLPET-LPPTITTLDVSRNALTN-LPEN-LP--AALQIMQASRNNLVRLP 404 (754)
T ss_pred CCcccc-CChhhc--CcccEEECCCCCC-CcCChh-hcCCcCEEECCCCcCCC-CCHh-HH--HHHHHHhhccCCcccCc
Confidence 776554 454443 5777777777766 344542 34567777777777664 3332 22 35666777766554332
Q ss_pred CC--C---CCCcccEEEecCCCC
Q 038861 1122 SP--W---FPASLTVLHISYMPN 1139 (1165)
Q Consensus 1122 ~~--~---~~~~L~~L~l~~~~~ 1139 (1165)
.. . ..+.+..|++.+|+.
T Consensus 405 ~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 405 ESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred hhHHHHhhcCCCccEEEeeCCCc
Confidence 21 0 113456666666653
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.43 E-value=3.2e-13 Score=159.58 Aligned_cols=99 Identities=21% Similarity=0.195 Sum_probs=48.4
Q ss_pred CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeee
Q 038861 985 TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEI 1064 (1165)
Q Consensus 985 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 1064 (1165)
++|+.|++++|.+.+ +|..+. ++|+.|++++|++. .+|..+. ++|+.|+|++|.+.. +|..+. .+|+.|++
T Consensus 325 ~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdL 395 (754)
T PRK15370 325 PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--AALQIMQA 395 (754)
T ss_pred ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--HHHHHHhh
Confidence 445555555555433 343332 45666666665543 2333332 356666666665543 333332 24556666
Q ss_pred ccCCCCcccCCC-----CCCCCcceEEEecCCCC
Q 038861 1065 GWCRSLVSFPED-----GFPTNLESLEVHDLKIS 1093 (1165)
Q Consensus 1065 ~~n~~~~~~p~~-----~~~~~L~~L~l~~n~~~ 1093 (1165)
++|++. .+|.. ...+++..|++.+|++.
T Consensus 396 s~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 396 SRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred ccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 666553 33332 22355556666666654
No 22
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.40 E-value=9.5e-12 Score=140.42 Aligned_cols=289 Identities=21% Similarity=0.244 Sum_probs=190.7
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcC-CCCHHHHHHHHHHhccCCCCC-
Q 038861 9 EIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSE-DFDVFRVTKSILMSISNVTVN- 86 (1165)
Q Consensus 9 ~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~-~~~~~~~~~~i~~~l~~~~~~- 86 (1165)
++.+.|... ...|.+.|..|+|.||||++.+.+. ....-..+.|..++. +.++..+...++..++...+.
T Consensus 26 rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~---~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~ 97 (894)
T COG2909 26 RLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE---LAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTL 97 (894)
T ss_pred HHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH---hcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccc
Confidence 455555432 3578999999999999999999873 333445788999886 457888888888888743322
Q ss_pred ------------CCCHHHHHHHHHHHhc--CceEEEEEeCCCCCCccch-hhhhcccCCCCCCcEEEEecCchHHHHh--
Q 038861 87 ------------DNDLNSLQEKLEKELI--KKKFLLVLDDMWNENYNDW-ELLNRPFKAGTSGSKIIVTTRNRVVAER-- 149 (1165)
Q Consensus 87 ------------~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~~~~~-~~l~~~~~~~~~~~~iiiTtR~~~~~~~-- 149 (1165)
..+...+.+.+...+. .++..+|+||.+-...... ..+...+...+++-..|||||++.-..-
T Consensus 98 ~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~ 177 (894)
T COG2909 98 GDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLAR 177 (894)
T ss_pred cHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccc
Confidence 2233445555555554 4689999999966543333 2343444556778999999998742211
Q ss_pred hc-ccceeeC----CCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHhhhcCCCChhHHHHHH
Q 038861 150 VG-SVREYPL----GELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLGGLLRGKHDPKDWEIVL 224 (1165)
Q Consensus 150 ~~-~~~~~~l----~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~~ 224 (1165)
+. .....++ -.|+.+|+.++|...... +-....++.+.+..+|++-|+.+++-.++...+.+.-...+
T Consensus 178 lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l-------~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~L 250 (894)
T COG2909 178 LRLRDELLEIGSEELRFDTEEAAAFLNDRGSL-------PLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGL 250 (894)
T ss_pred eeehhhHHhcChHhhcCChHHHHHHHHHcCCC-------CCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhc
Confidence 11 1123333 358999999999977411 12235688999999999999999998888432222111111
Q ss_pred hccccccCCCCCChhH-HHHhccccCcHHHHhHhhhhcCCCCCCccChHHHHHHHHHcCCcccccCcccHHHHHHHHHHH
Q 038861 225 NADVWDFADDGCDIIP-ALKVSYRFLPPQLKQCFAYCSLFPKDYEFEEEEIILLWTAEGFLDQECDGRKMEELGREFVRE 303 (1165)
Q Consensus 225 ~~~~~~~~~~~~~~~~-~l~~sy~~L~~~~k~~fl~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~~ 303 (1165)
. ....-+.+ ..+--++.||++.|..++.+|+++.- -+.++....+ ++.+..++++
T Consensus 251 s-------G~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~Ltg-------------~~ng~amLe~ 306 (894)
T COG2909 251 S-------GAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNALTG-------------EENGQAMLEE 306 (894)
T ss_pred c-------chHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHHhc-------------CCcHHHHHHH
Confidence 1 00001111 23445899999999999999999542 2333332211 2336678999
Q ss_pred HHHcCccc-cccCCCCeEEEehHHHHHHHHhccc
Q 038861 304 LHSRSLFH-QSSKDASRFVMHSLINDLARWAAGE 336 (1165)
Q Consensus 304 L~~~~li~-~~~~~~~~~~~H~li~~~~~~~~~~ 336 (1165)
|.+++++- +.++...+|+.|+++.+|.+.....
T Consensus 307 L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 307 LERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred HHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 99999965 4566788999999999999876554
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.38 E-value=1.4e-14 Score=128.84 Aligned_cols=58 Identities=21% Similarity=0.249 Sum_probs=31.8
Q ss_pred cCcceEEEEeeCCCCCCcCcCCCCCCceeEEeEcccCCCCCCCCCCCCCCCceeeecCCC
Q 038861 570 QDVQELTITGYGGPKFPIWLGDSSFSKLVRLKFEHCGTSTSLPSVGQLPFLKELVISGMG 629 (1165)
Q Consensus 570 ~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~ 629 (1165)
+.|+.|++..|....+|..++. +++|+.|.+.+|.+....-.++.+..|++|.+.+|.
T Consensus 127 ~tlralyl~dndfe~lp~dvg~--lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 127 TTLRALYLGDNDFEILPPDVGK--LTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred HHHHHHHhcCCCcccCChhhhh--hcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce
Confidence 3344444555555555555554 566666666666554333345666666666666653
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.35 E-value=1.7e-14 Score=128.32 Aligned_cols=165 Identities=26% Similarity=0.293 Sum_probs=138.8
Q ss_pred CCccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEee
Q 038861 962 QALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIG 1041 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 1041 (1165)
...+.|.+++|......|......+|++|++++|++ ..+|.+++.+++|+.|+++-|. +..+|.+|+.+|.|+.||+.
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi-e~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI-EELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh-hhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhcc
Confidence 457888999997776666666669999999999998 6688999999999999999887 77889999999999999999
Q ss_pred cCCCCC-cCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCCCCc
Q 038861 1042 YCENLK-ALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCPVL 1119 (1165)
Q Consensus 1042 ~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 1119 (1165)
+|++.. .+|..|-.++.|+.|.+++|.+ ..+|.+ +.+++|+.|.+.+|.+.. +|.+ ++.+++|++|++.||...+
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll~-lpke-ig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLLS-LPKE-IGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchhh-CcHH-HHHHHHHHHHhcccceeee
Confidence 998864 5799999999999999999999 666665 999999999999999875 4444 8999999999999987665
Q ss_pred ccCCCCCCcccEEEecC
Q 038861 1120 LSSPWFPASLTVLHISY 1136 (1165)
Q Consensus 1120 ~~~~~~~~~L~~L~l~~ 1136 (1165)
+ |+.|-.|++-+
T Consensus 188 l-----ppel~~l~l~~ 199 (264)
T KOG0617|consen 188 L-----PPELANLDLVG 199 (264)
T ss_pred c-----Chhhhhhhhhh
Confidence 4 44555555443
No 25
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.35 E-value=9.3e-11 Score=133.41 Aligned_cols=292 Identities=15% Similarity=0.082 Sum_probs=170.7
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
+||++|+++|...+...-. +.....+.|+|++|+|||++++.++++.......-..+++++....+...++..++.++
T Consensus 33 ~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l 110 (394)
T PRK00411 33 PHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQL 110 (394)
T ss_pred CCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHh
Confidence 6999999999999854321 12345678999999999999999996533222223456677777778888999999988
Q ss_pred cCCC--CCCCCHHHHHHHHHHHhc--CceEEEEEeCCCCCC----ccchhhhhcccCCCC-CCcEEEEecCchHHHHhhc
Q 038861 81 SNVT--VNDNDLNSLQEKLEKELI--KKKFLLVLDDMWNEN----YNDWELLNRPFKAGT-SGSKIIVTTRNRVVAERVG 151 (1165)
Q Consensus 81 ~~~~--~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~----~~~~~~l~~~~~~~~-~~~~iiiTtR~~~~~~~~~ 151 (1165)
.... ....+.++....+.+.++ +++.+||+|+++... ...+..+...+.... .+..+|.++....+.....
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l~ 190 (394)
T PRK00411 111 FGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYILD 190 (394)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhcC
Confidence 6522 123345666777777664 457899999996632 122233322222211 1233555555543322211
Q ss_pred -------ccceeeCCCCCHHHHHHHHhhcccCC--CCCCCCcchHHHHHHHHHHc----CCCchHHHHHHhhh--c--C-
Q 038861 152 -------SVREYPLGELSKEDCLRVLTQHSLGA--TDFNTHQSLKEVREKIAMKC----KGLPLAAKTLGGLL--R--G- 213 (1165)
Q Consensus 152 -------~~~~~~l~~l~~~e~~~lf~~~~~~~--~~~~~~~~~~~~~~~i~~~~----~g~Plal~~~~~~l--~--~- 213 (1165)
....+.+++++.++..+++..++... ....++ ++++.|++.+ |..+.|+.++-.+. + +
T Consensus 191 ~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~----~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~ 266 (394)
T PRK00411 191 PRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDD----EVLDLIADLTAREHGDARVAIDLLRRAGLIAEREG 266 (394)
T ss_pred HHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCH----hHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 12467899999999999998875321 111122 3344444444 55777777764322 1 1
Q ss_pred CC--ChhHHHHHHhccccccCCCCCChhHHHHhccccCcHHHHhHhhhhcCCCC--CCccChHHHHHHH--HHcCCcccc
Q 038861 214 KH--DPKDWEIVLNADVWDFADDGCDIIPALKVSYRFLPPQLKQCFAYCSLFPK--DYEFEEEEIILLW--TAEGFLDQE 287 (1165)
Q Consensus 214 ~~--~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~la~f~~--~~~i~~~~l~~~w--~~~~~~~~~ 287 (1165)
.. +.+....+.+.. -.....-.+..||.++|.++..++...+ ...+....+.... +++.+-.
T Consensus 267 ~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~-- 334 (394)
T PRK00411 267 SRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY-- 334 (394)
T ss_pred CCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC--
Confidence 11 233333333321 1223455688999999998887764422 1234555544321 1111100
Q ss_pred cCcccHHHHHHHHHHHHHHcCcccc
Q 038861 288 CDGRKMEELGREFVRELHSRSLFHQ 312 (1165)
Q Consensus 288 ~~~~~~~~~~~~~l~~L~~~~li~~ 312 (1165)
.........+++..|...++|..
T Consensus 335 --~~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 335 --EPRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred --CcCcHHHHHHHHHHHHhcCCeEE
Confidence 01123456779999999999975
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.29 E-value=6.2e-13 Score=147.58 Aligned_cols=201 Identities=17% Similarity=0.019 Sum_probs=127.7
Q ss_pred CCccEEEEcCCCCchhhhhhccc----Cccceeeeecccccc----cCCcccCCC-CCCCEEEEeCCCCCc----cccCC
Q 038861 962 QALKYLEVSYCSKLESLAERLDN----TSLEVIAISYLENLK----SLPAGLHNL-HHLQELKVYGCPNLE----SFPEG 1028 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~~~~~~~~----~~L~~L~L~~n~~~~----~~p~~~~~l-~~L~~L~L~~n~~~~----~~~~~ 1028 (1165)
++|+.|++++|......+..+.. ++|++|++++|.+.. .+...+..+ ++|++|++++|.+.+ .++..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 46888888888765444433322 348888888887753 223345566 788888888888763 23334
Q ss_pred CCCCCCcCeEEeecCCCCCc----CCcccCCCCCCceeeeccCCCCccc----CCC-CCCCCcceEEEecCCCCCccccc
Q 038861 1029 GLPSTKLTKLTIGYCENLKA----LPNCMHNLTSLLHLEIGWCRSLVSF----PED-GFPTNLESLEVHDLKISKPLFEW 1099 (1165)
Q Consensus 1029 ~~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~----p~~-~~~~~L~~L~l~~n~~~~~~~~~ 1099 (1165)
+..+++|+.|++++|.+.+. ++..+..+++|+.|++++|.+.+.- +.. ..+++|+.|++++|++.+.....
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 55667888888888887632 2334556678888888888764221 111 45678888888888877422222
Q ss_pred ccc----cCCCCcEEEEecCCCCcccCC------CCCCcccEEEecCCCCccc----HHHhhhcC-CccceEeecCCC
Q 038861 1100 GLN----KFSSLRELQITGGCPVLLSSP------WFPASLTVLHISYMPNLES----LSLIVENL-TSLEILILCKCP 1162 (1165)
Q Consensus 1100 ~~~----~l~~L~~L~l~~n~~~~~~~~------~~~~~L~~L~l~~~~~l~~----l~~~~~~l-~~L~~L~l~~c~ 1162 (1165)
... ..+.|+.|++++|.+...... ...++|+++++++|..-.. +...+... +.|+.+++.++|
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 112 247888888888765421111 1135788888888665422 44445555 789999988876
No 27
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.22 E-value=1.9e-09 Score=121.30 Aligned_cols=298 Identities=15% Similarity=0.081 Sum_probs=167.1
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchh-ccC---CceEEEEEcCCCCHHHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVR-RHF---EIKAWTFVSEDFDVFRVTKSI 76 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~-~~f---~~~~w~~~~~~~~~~~~~~~i 76 (1165)
+||++|+++|..++..... +.....+.|+|++|+|||+++++++++.... ... -..+|+.+....+...++..+
T Consensus 18 ~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i 95 (365)
T TIGR02928 18 VHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVEL 95 (365)
T ss_pred CCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHH
Confidence 6999999999999864211 1234568999999999999999998643211 111 135677777777788899999
Q ss_pred HHhcc---CCCC-CCCCHHHHHHHHHHHhc--CceEEEEEeCCCCCC--ccc-hhhhhcc--cCCC-CCCcEEEEecCch
Q 038861 77 LMSIS---NVTV-NDNDLNSLQEKLEKELI--KKKFLLVLDDMWNEN--YND-WELLNRP--FKAG-TSGSKIIVTTRNR 144 (1165)
Q Consensus 77 ~~~l~---~~~~-~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~--~~~-~~~l~~~--~~~~-~~~~~iiiTtR~~ 144 (1165)
+.++. .... ...+..+....+.+.+. +++++||+|+++... ..+ ...+... .... .....+|.++...
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~ 175 (365)
T TIGR02928 96 ANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDL 175 (365)
T ss_pred HHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCc
Confidence 98884 2211 22234455555655553 568999999996652 111 1222221 1111 1233445555433
Q ss_pred HHHHhhc-------ccceeeCCCCCHHHHHHHHhhcccCC-CCCCCCcchHHHHHHHHHHcCCCch-HHHHHHhhh--c-
Q 038861 145 VVAERVG-------SVREYPLGELSKEDCLRVLTQHSLGA-TDFNTHQSLKEVREKIAMKCKGLPL-AAKTLGGLL--R- 212 (1165)
Q Consensus 145 ~~~~~~~-------~~~~~~l~~l~~~e~~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~~l--~- 212 (1165)
.....+. ....+.+++.+.+|..+++..++... ....-.++..+...+++..+.|.|- |+.++-... .
T Consensus 176 ~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~ 255 (365)
T TIGR02928 176 KFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAE 255 (365)
T ss_pred chHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 3221111 12468899999999999998876311 1111222333445556777778874 333322111 1
Q ss_pred -CC---CChhHHHHHHhccccccCCCCCChhHHHHhccccCcHHHHhHhhhhcCCC--CCCccChHHHHHHHHH-cCCcc
Q 038861 213 -GK---HDPKDWEIVLNADVWDFADDGCDIIPALKVSYRFLPPQLKQCFAYCSLFP--KDYEFEEEEIILLWTA-EGFLD 285 (1165)
Q Consensus 213 -~~---~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~la~f~--~~~~i~~~~l~~~w~~-~~~~~ 285 (1165)
.. -+.+..+.+.... -.....-++..||.+++.++..++..- .+..+....+...+.. ...+.
T Consensus 256 ~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 325 (365)
T TIGR02928 256 REGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDIG 325 (365)
T ss_pred HcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcC
Confidence 11 1122222222211 112344567789998888777765321 3334555555553221 11111
Q ss_pred cccCcccHHHHHHHHHHHHHHcCccccc
Q 038861 286 QECDGRKMEELGREFVRELHSRSLFHQS 313 (1165)
Q Consensus 286 ~~~~~~~~~~~~~~~l~~L~~~~li~~~ 313 (1165)
..........+++..|...|+|+..
T Consensus 326 ---~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 326 ---VDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred ---CCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 0112346678899999999999864
No 28
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.21 E-value=1.1e-09 Score=117.33 Aligned_cols=181 Identities=21% Similarity=0.180 Sum_probs=115.0
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH-----
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKE----- 100 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----- 100 (1165)
.++.|+|++|+||||+++.++..... ..+ ..+|+ +....+..+++..++..++.... ..+.......+.+.
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~-~~~~~~~~~~l~~~l~~~~ 119 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE-GRDKAALLRELEDFLIEQF 119 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHHHHHH
Confidence 47899999999999999999865331 111 12233 33345777888888888865432 22223333333322
Q ss_pred hcCceEEEEEeCCCCCCccchhhhhcccC---CCCCCcEEEEecCchHHHHhh----------cccceeeCCCCCHHHHH
Q 038861 101 LIKKKFLLVLDDMWNENYNDWELLNRPFK---AGTSGSKIIVTTRNRVVAERV----------GSVREYPLGELSKEDCL 167 (1165)
Q Consensus 101 l~~~~~LlvlDdv~~~~~~~~~~l~~~~~---~~~~~~~iiiTtR~~~~~~~~----------~~~~~~~l~~l~~~e~~ 167 (1165)
..+++.++|+||++......++.+..... .......|++|.... ....+ .....+++++++.+|..
T Consensus 120 ~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~ 198 (269)
T TIGR03015 120 AAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETR 198 (269)
T ss_pred hCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHH
Confidence 26788999999998876555655542211 112233556666543 22111 11346789999999999
Q ss_pred HHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHhhh
Q 038861 168 RVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLGGLL 211 (1165)
Q Consensus 168 ~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 211 (1165)
+++...+...+......-..+..+.|++.++|.|..|..++..+
T Consensus 199 ~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 199 EYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99987754332111112234889999999999999999988776
No 29
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.14 E-value=2.4e-10 Score=125.04 Aligned_cols=274 Identities=14% Similarity=0.086 Sum_probs=145.6
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
|||++.++.+..++..... .....+.+.|+|++|+|||++|+.+++... ..+ .++.. ........+..++..+
T Consensus 28 vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l~--~~~---~~~~~-~~~~~~~~l~~~l~~l 100 (328)
T PRK00080 28 IGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEMG--VNI---RITSG-PALEKPGDLAAILTNL 100 (328)
T ss_pred cCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHhC--CCe---EEEec-ccccChHHHHHHHHhc
Confidence 6999999999888864221 123456789999999999999999986432 111 11111 1111112222333332
Q ss_pred cCCCC-CCCCH----HHHHHHHHHHhcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCchHHHHhh--ccc
Q 038861 81 SNVTV-NDNDL----NSLQEKLEKELIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRVVAERV--GSV 153 (1165)
Q Consensus 81 ~~~~~-~~~~~----~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~~~~~~--~~~ 153 (1165)
..... --++. ....+.+...+.+.+..+|+|+..+.... ... ..+.+-|..|+|...+...+ +..
T Consensus 101 ~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~-----~~~---l~~~~li~at~~~~~l~~~L~sRf~ 172 (328)
T PRK00080 101 EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSI-----RLD---LPPFTLIGATTRAGLLTSPLRDRFG 172 (328)
T ss_pred ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccce-----eec---CCCceEEeecCCcccCCHHHHHhcC
Confidence 21110 00000 11122233344444455555544222110 001 12345566677754333222 112
Q ss_pred ceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHhhhcCCCChhHHHHHHhccccccC-
Q 038861 154 REYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLGGLLRGKHDPKDWEIVLNADVWDFA- 232 (1165)
Q Consensus 154 ~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~~~~~~~~~~- 232 (1165)
..++++++++++..+++...+...... -..+.+..|++.|+|.|-.+..+...+. .|....... ...
T Consensus 173 ~~~~l~~~~~~e~~~il~~~~~~~~~~----~~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~~~--~I~~ 240 (328)
T PRK00080 173 IVQRLEFYTVEELEKIVKRSARILGVE----IDEEGALEIARRSRGTPRIANRLLRRVR------DFAQVKGDG--VITK 240 (328)
T ss_pred eeeecCCCCHHHHHHHHHHHHHHcCCC----cCHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcCCC--CCCH
Confidence 468999999999999999876543321 2237789999999999965554444321 121111000 000
Q ss_pred CCCCChhHHHHhccccCcHHHHhHhh-hhcCCCCCCccChHHHHHHHHHcCCcccccCcccHHHHHHHHHH-HHHHcCcc
Q 038861 233 DDGCDIIPALKVSYRFLPPQLKQCFA-YCSLFPKDYEFEEEEIILLWTAEGFLDQECDGRKMEELGREFVR-ELHSRSLF 310 (1165)
Q Consensus 233 ~~~~~~~~~l~~sy~~L~~~~k~~fl-~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~-~L~~~~li 310 (1165)
..-......+...+..|++..+..+. ....|+.+ .+..+.+.... |. ..+.+++.++ .|++.+++
T Consensus 241 ~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g~---------~~~~~~~~~e~~Li~~~li 307 (328)
T PRK00080 241 EIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---GE---------ERDTIEDVYEPYLIQQGFI 307 (328)
T ss_pred HHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---CC---------CcchHHHHhhHHHHHcCCc
Confidence 00012234456778889998888886 66677655 45555543322 11 1233555666 89999999
Q ss_pred cccc
Q 038861 311 HQSS 314 (1165)
Q Consensus 311 ~~~~ 314 (1165)
+...
T Consensus 308 ~~~~ 311 (328)
T PRK00080 308 QRTP 311 (328)
T ss_pred ccCC
Confidence 7543
No 30
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.13 E-value=1.4e-10 Score=122.20 Aligned_cols=194 Identities=23% Similarity=0.229 Sum_probs=97.7
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHH----
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSI---- 76 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i---- 76 (1165)
|||++|+++|.+++.++. .+.+.|+|+.|+|||+|++++.+.. ...-..++|+......... ....+
T Consensus 2 ~gR~~el~~l~~~l~~~~------~~~~~l~G~rg~GKTsLl~~~~~~~--~~~~~~~~y~~~~~~~~~~-~~~~~~~~~ 72 (234)
T PF01637_consen 2 FGREKELEKLKELLESGP------SQHILLYGPRGSGKTSLLKEFINEL--KEKGYKVVYIDFLEESNES-SLRSFIEET 72 (234)
T ss_dssp -S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHC--T--EECCCHHCCTTBSHHH-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhc------CcEEEEEcCCcCCHHHHHHHHHHHh--hhcCCcEEEEecccchhhh-HHHHHHHHH
Confidence 799999999999997642 3589999999999999999998532 2211133444443333221 11111
Q ss_pred ----------HHhccCCCC------CCCCHHHHHHHHHHHhc--CceEEEEEeCCCCCC-c----cc-hhhhhcccCC--
Q 038861 77 ----------LMSISNVTV------NDNDLNSLQEKLEKELI--KKKFLLVLDDMWNEN-Y----ND-WELLNRPFKA-- 130 (1165)
Q Consensus 77 ----------~~~l~~~~~------~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~-~----~~-~~~l~~~~~~-- 130 (1165)
...+..... ...........+.+.+. +++++||+||++... . .. ...+...+..
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~ 152 (234)
T PF01637_consen 73 SLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL 152 (234)
T ss_dssp HHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc
Confidence 111111100 01111222333333332 345999999995543 0 01 1122222222
Q ss_pred CCCCcEEEEecCchHHHHh--------hcccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCch
Q 038861 131 GTSGSKIIVTTRNRVVAER--------VGSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPL 202 (1165)
Q Consensus 131 ~~~~~~iiiTtR~~~~~~~--------~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 202 (1165)
......+|++.....+... .+....+.+++|+.+++++++....... . .- +...+..++|+..+||+|.
T Consensus 153 ~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~-~~-~~~~~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 153 SQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-I-KL-PFSDEDIEEIYSLTGGNPR 229 (234)
T ss_dssp --TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-HH
T ss_pred ccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-h-cc-cCCHHHHHHHHHHhCCCHH
Confidence 1233344444444433332 2233459999999999999999864322 1 11 2234677999999999999
Q ss_pred HHHH
Q 038861 203 AAKT 206 (1165)
Q Consensus 203 al~~ 206 (1165)
.|..
T Consensus 230 ~l~~ 233 (234)
T PF01637_consen 230 YLQE 233 (234)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8864
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.10 E-value=2.2e-11 Score=135.20 Aligned_cols=201 Identities=21% Similarity=0.111 Sum_probs=143.7
Q ss_pred CCccEEEEcCCCCch------hhhhhcc-cCccceeeeecccccccCCcccCCCCC---CCEEEEeCCCCCc----cccC
Q 038861 962 QALKYLEVSYCSKLE------SLAERLD-NTSLEVIAISYLENLKSLPAGLHNLHH---LQELKVYGCPNLE----SFPE 1027 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~------~~~~~~~-~~~L~~L~L~~n~~~~~~p~~~~~l~~---L~~L~L~~n~~~~----~~~~ 1027 (1165)
+++++|+++++...+ .++..+. .++|+.|++++|.+.+..+..+..+.+ |++|++++|.+.. .+..
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence 569999999886541 2223332 389999999999997666655555554 9999999998762 2233
Q ss_pred CCCCC-CCcCeEEeecCCCCCc----CCcccCCCCCCceeeeccCCCCcc----cCCC-CCCCCcceEEEecCCCCCccc
Q 038861 1028 GGLPS-TKLTKLTIGYCENLKA----LPNCMHNLTSLLHLEIGWCRSLVS----FPED-GFPTNLESLEVHDLKISKPLF 1097 (1165)
Q Consensus 1028 ~~~~l-~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~p~~-~~~~~L~~L~l~~n~~~~~~~ 1097 (1165)
.+..+ ++|+.|++++|.+... ++..+..+++|++|++++|.+.+. ++.. ...++|+.|++++|.+.+...
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 210 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA 210 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence 44555 8999999999998742 344677788999999999998532 2221 345799999999999874321
Q ss_pred ---ccccccCCCCcEEEEecCCCCcccCCC----C---CCcccEEEecCCCCc----ccHHHhhhcCCccceEeecCCC
Q 038861 1098 ---EWGLNKFSSLRELQITGGCPVLLSSPW----F---PASLTVLHISYMPNL----ESLSLIVENLTSLEILILCKCP 1162 (1165)
Q Consensus 1098 ---~~~~~~l~~L~~L~l~~n~~~~~~~~~----~---~~~L~~L~l~~~~~l----~~l~~~~~~l~~L~~L~l~~c~ 1162 (1165)
...+..+++|++|++++|......... + .++|++|++++|..- ..+...+..+++|+++++++|.
T Consensus 211 ~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 211 SALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 233667899999999998665322111 1 369999999997542 2344556677899999999985
No 32
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.07 E-value=7e-09 Score=113.25 Aligned_cols=272 Identities=13% Similarity=0.070 Sum_probs=145.2
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
|||+++++.+..++..... .......+.++|++|+|||+||+.+++.. ...+ ..+.......... +...+..+
T Consensus 7 iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~--~~~~---~~~~~~~~~~~~~-l~~~l~~~ 79 (305)
T TIGR00635 7 IGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEM--GVNL---KITSGPALEKPGD-LAAILTNL 79 (305)
T ss_pred cCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCCE---EEeccchhcCchh-HHHHHHhc
Confidence 7999999999998864321 12334568899999999999999998642 2221 1111111111111 12222222
Q ss_pred cCCCC------CCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCchHHHHhh--cc
Q 038861 81 SNVTV------NDNDLNSLQEKLEKELIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRVVAERV--GS 152 (1165)
Q Consensus 81 ~~~~~------~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~~~~~~--~~ 152 (1165)
..... +... ......+...+.+.+..+|+|+..... .+ .. ...+.+-|..||+...+...+ +.
T Consensus 80 ~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~--~~---~~---~~~~~~li~~t~~~~~l~~~l~sR~ 150 (305)
T TIGR00635 80 EEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSAR--SV---RL---DLPPFTLVGATTRAGMLTSPLRDRF 150 (305)
T ss_pred ccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCcccc--ce---ee---cCCCeEEEEecCCccccCHHHHhhc
Confidence 21110 0001 112233444445555556666543221 11 01 112356666777765433322 12
Q ss_pred cceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHhhhcCCCChhHHHHHHhccccccC
Q 038861 153 VREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLGGLLRGKHDPKDWEIVLNADVWDFA 232 (1165)
Q Consensus 153 ~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~~~~~~~~~~ 232 (1165)
...+++++++++|..+++.+.+..... .-..+.+..|++.|+|.|-.+..++..+. ............
T Consensus 151 ~~~~~l~~l~~~e~~~il~~~~~~~~~----~~~~~al~~ia~~~~G~pR~~~~ll~~~~--------~~a~~~~~~~it 218 (305)
T TIGR00635 151 GIILRLEFYTVEELAEIVSRSAGLLNV----EIEPEAALEIARRSRGTPRIANRLLRRVR--------DFAQVRGQKIIN 218 (305)
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHHhCCCcchHHHHHHHHH--------HHHHHcCCCCcC
Confidence 246789999999999999987643322 12236788999999999976655554331 111000000000
Q ss_pred C-CCCChhHHHHhccccCcHHHHhHhh-hhcCCCCCCccChHHHHHHHHHcCCcccccCcccHHHHHHHHHH-HHHHcCc
Q 038861 233 D-DGCDIIPALKVSYRFLPPQLKQCFA-YCSLFPKDYEFEEEEIILLWTAEGFLDQECDGRKMEELGREFVR-ELHSRSL 309 (1165)
Q Consensus 233 ~-~~~~~~~~l~~sy~~L~~~~k~~fl-~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~-~L~~~~l 309 (1165)
. .-......+...|..+++.++..+. .++.+..+ .+..+.+.... |. ....++..++ .|+++++
T Consensus 219 ~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~---------~~~~~~~~~e~~Li~~~l 285 (305)
T TIGR00635 219 RDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE---------DADTIEDVYEPYLLQIGF 285 (305)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC---------CcchHHHhhhHHHHHcCC
Confidence 0 0011222356678899998888777 44666543 34443333321 11 1234666678 6999999
Q ss_pred cccc
Q 038861 310 FHQS 313 (1165)
Q Consensus 310 i~~~ 313 (1165)
+...
T Consensus 286 i~~~ 289 (305)
T TIGR00635 286 LQRT 289 (305)
T ss_pred cccC
Confidence 9753
No 33
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.04 E-value=3.4e-09 Score=128.58 Aligned_cols=310 Identities=14% Similarity=0.164 Sum_probs=180.3
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcch-hccCCceEEEEEcCCCC---HHHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRV-RRHFEIKAWTFVSEDFD---VFRVTKSI 76 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~-~~~f~~~~w~~~~~~~~---~~~~~~~i 76 (1165)
+||+.|++.|...+..... +...++.+.|.+|||||+++++|.....- ++.|-...+-...+... ..+.++++
T Consensus 3 ~GRe~ev~~Ll~~f~~v~~---g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l 79 (849)
T COG3899 3 YGRETELAQLLAAFDRVSK---GRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDL 79 (849)
T ss_pred CchHhHHHHHHHHHHHHhC---CCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHH
Confidence 6999999999999976543 45679999999999999999999853211 12221111211222222 12233333
Q ss_pred HHhccCCCC---------------------------------------C--CCCHHHH-----HHHHHHHh-cCceEEEE
Q 038861 77 LMSISNVTV---------------------------------------N--DNDLNSL-----QEKLEKEL-IKKKFLLV 109 (1165)
Q Consensus 77 ~~~l~~~~~---------------------------------------~--~~~~~~~-----~~~l~~~l-~~~~~Llv 109 (1165)
+.++..... + +...... ...+.... +.++.++|
T Consensus 80 ~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~ 159 (849)
T COG3899 80 MGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIV 159 (849)
T ss_pred HHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEE
Confidence 333310000 0 0000111 11122222 45699999
Q ss_pred EeCCCCCCccchhhhhcccCCCC------CCcEEEEecCch--HHHHhhcccceeeCCCCCHHHHHHHHhhcccCCCCCC
Q 038861 110 LDDMWNENYNDWELLNRPFKAGT------SGSKIIVTTRNR--VVAERVGSVREYPLGELSKEDCLRVLTQHSLGATDFN 181 (1165)
Q Consensus 110 lDdv~~~~~~~~~~l~~~~~~~~------~~~~iiiTtR~~--~~~~~~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~ 181 (1165)
+||+++.+....+-+........ ...-.+.|.+.. .+.........+.+.||+..+...+.........
T Consensus 160 leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~--- 236 (849)
T COG3899 160 LEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK--- 236 (849)
T ss_pred EecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc---
Confidence 99998877665544432222211 122233344433 2222233446899999999999999887743222
Q ss_pred CCcchHHHHHHHHHHcCCCchHHHHHHhhhcCC------CChhHHHHHHhccccccCCCCCChhHHHHhccccCcHHHHh
Q 038861 182 THQSLKEVREKIAMKCKGLPLAAKTLGGLLRGK------HDPKDWEIVLNADVWDFADDGCDIIPALKVSYRFLPPQLKQ 255 (1165)
Q Consensus 182 ~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~------~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~ 255 (1165)
....+....|+++.+|+|+.+..+-..+... .+...|..-.... .. ......+...+..-.+.||...|.
T Consensus 237 --~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i-~~-~~~~~~vv~~l~~rl~kL~~~t~~ 312 (849)
T COG3899 237 --LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL-GI-LATTDAVVEFLAARLQKLPGTTRE 312 (849)
T ss_pred --cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc-CC-chhhHHHHHHHHHHHhcCCHHHHH
Confidence 1223778999999999999999998888764 2233343221111 01 111112444588889999999999
Q ss_pred HhhhhcCCCCCCccChHHHHHHHHHcCCcccccCcccHHHHHHHHHHHHHHcCccccc-----cCCCCe--E-EEehHHH
Q 038861 256 CFAYCSLFPKDYEFEEEEIILLWTAEGFLDQECDGRKMEELGREFVRELHSRSLFHQS-----SKDASR--F-VMHSLIN 327 (1165)
Q Consensus 256 ~fl~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~li~~~-----~~~~~~--~-~~H~li~ 327 (1165)
+....||+.. .++.+.+...+-. ...+++...++.|....++... ...... | ..|+.++
T Consensus 313 Vl~~AA~iG~--~F~l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vq 379 (849)
T COG3899 313 VLKAAACIGN--RFDLDTLAALAED-----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQ 379 (849)
T ss_pred HHHHHHHhCc--cCCHHHHHHHHhh-----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHH
Confidence 9999999965 4556666654422 2345677777777776666421 111112 2 5899999
Q ss_pred HHHHHh
Q 038861 328 DLARWA 333 (1165)
Q Consensus 328 ~~~~~~ 333 (1165)
+.+-..
T Consensus 380 qaaY~~ 385 (849)
T COG3899 380 QAAYNL 385 (849)
T ss_pred HHHhcc
Confidence 987533
No 34
>PF05729 NACHT: NACHT domain
Probab=99.01 E-value=1.3e-09 Score=107.40 Aligned_cols=142 Identities=21% Similarity=0.227 Sum_probs=87.2
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhcc----CCceEEEEEcCCCCHH---HHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRH----FEIKAWTFVSEDFDVF---RVTKSILMSISNVTVNDNDLNSLQEKLE 98 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~w~~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 98 (1165)
|++.|+|.+|+||||+++.++.+...... +...+|+......... .+...+........ ..... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHH---HHH
Confidence 57999999999999999999865433332 3345566655543322 34444443332211 11111 111
Q ss_pred H-HhcCceEEEEEeCCCCCCccc-------hhhhhc-ccCC-CCCCcEEEEecCchHH---HHhhcccceeeCCCCCHHH
Q 038861 99 K-ELIKKKFLLVLDDMWNENYND-------WELLNR-PFKA-GTSGSKIIVTTRNRVV---AERVGSVREYPLGELSKED 165 (1165)
Q Consensus 99 ~-~l~~~~~LlvlDdv~~~~~~~-------~~~l~~-~~~~-~~~~~~iiiTtR~~~~---~~~~~~~~~~~l~~l~~~e 165 (1165)
. .-+.++++||+|++++..... +..+.. .+.. ..++++++||+|+... .........+++.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 1 225789999999996643311 222222 2222 3568999999999765 3334455689999999999
Q ss_pred HHHHHhhc
Q 038861 166 CLRVLTQH 173 (1165)
Q Consensus 166 ~~~lf~~~ 173 (1165)
..+++.+.
T Consensus 155 ~~~~~~~~ 162 (166)
T PF05729_consen 155 IKQYLRKY 162 (166)
T ss_pred HHHHHHHH
Confidence 99999865
No 35
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.99 E-value=1.5e-08 Score=115.82 Aligned_cols=300 Identities=13% Similarity=0.100 Sum_probs=156.9
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcch---hccCC--ceEEEEEcCCCCHHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRV---RRHFE--IKAWTFVSEDFDVFRVTKS 75 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~---~~~f~--~~~w~~~~~~~~~~~~~~~ 75 (1165)
.|||+|+++|...|...-. +.+...++.|+|++|+|||+.++.|....+. ....+ .++++.+....+...++..
T Consensus 758 PhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqv 836 (1164)
T PTZ00112 758 PCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQV 836 (1164)
T ss_pred CChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHH
Confidence 4899999999999875322 2233467889999999999999999854321 11222 3457777777788888888
Q ss_pred HHHhccCCCC-CCCCHHHHHHHHHHHhc---CceEEEEEeCCCCCCccchhhhhcccCC-CCCCcEEEE--ecCchHHH-
Q 038861 76 ILMSISNVTV-NDNDLNSLQEKLEKELI---KKKFLLVLDDMWNENYNDWELLNRPFKA-GTSGSKIIV--TTRNRVVA- 147 (1165)
Q Consensus 76 i~~~l~~~~~-~~~~~~~~~~~l~~~l~---~~~~LlvlDdv~~~~~~~~~~l~~~~~~-~~~~~~iii--TtR~~~~~- 147 (1165)
|..++..... ......+....+...+. +...+||||+++.-....-+.+...+.+ ...+++|+| ++...+..
T Consensus 837 I~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLpe 916 (1164)
T PTZ00112 837 LYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPE 916 (1164)
T ss_pred HHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcch
Confidence 8888843332 22233344444444432 2346999999965322111222222211 123455444 33322111
Q ss_pred ---Hhhc---ccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHhhhcCCCC----h
Q 038861 148 ---ERVG---SVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLGGLLRGKHD----P 217 (1165)
Q Consensus 148 ---~~~~---~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~----~ 217 (1165)
..+. ....+...+.+.+|-.+++..++........+...+-+|+.++...|-.=.||.++-.+...+.. .
T Consensus 917 rLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikegskVT~ 996 (1164)
T PTZ00112 917 RLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQKIVP 996 (1164)
T ss_pred hhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCCCccCH
Confidence 1111 12346779999999999999987543222222222333333333344456666665444432111 1
Q ss_pred hHHHHHHhccccccCCCCCChhHHHHhccccCcHHHHhHhhhhcCCCC---CCccChHHHHHHHHHc-CCcccccCc-cc
Q 038861 218 KDWEIVLNADVWDFADDGCDIIPALKVSYRFLPPQLKQCFAYCSLFPK---DYEFEEEEIILLWTAE-GFLDQECDG-RK 292 (1165)
Q Consensus 218 ~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~la~f~~---~~~i~~~~l~~~w~~~-~~~~~~~~~-~~ 292 (1165)
+.-..+.... ....+.-....||.+.|.++..+..... ...++...+....... .-.....+. ..
T Consensus 997 eHVrkAleei----------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~iGv~pl 1066 (1164)
T PTZ00112 997 RDITEATNQL----------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYIGMCSN 1066 (1164)
T ss_pred HHHHHHHHHH----------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhcCCCCc
Confidence 1111111110 0112333456788888777765543321 2234444443322111 000000011 12
Q ss_pred HHHHHHHHHHHHHHcCcccc
Q 038861 293 MEELGREFVRELHSRSLFHQ 312 (1165)
Q Consensus 293 ~~~~~~~~l~~L~~~~li~~ 312 (1165)
.+ ...+++.+|...|+|-.
T Consensus 1067 Tq-RV~d~L~eL~~LGIIl~ 1085 (1164)
T PTZ00112 1067 NE-LFKIMLDKLVKMGILLI 1085 (1164)
T ss_pred HH-HHHHHHHHHHhcCeEEe
Confidence 23 67778899999888754
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.88 E-value=4.7e-10 Score=135.23 Aligned_cols=248 Identities=26% Similarity=0.309 Sum_probs=145.3
Q ss_pred ccccccccccCcccccccccCCCC--ccccCcc-cccCCCccEEeccCcchhccccccccCCCCcceeeccCCCCCCCCC
Q 038861 399 NIFNLPNEIGNLRHLRFLNLSGTN--IQILPES-INSLYNLHTILLEDCRRLKKLCNDMGNLTKLHHLRNSNVHSLGEMP 475 (1165)
Q Consensus 399 ~l~~lp~~~~~l~~Lr~L~L~~~~--i~~lp~~-~~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p 475 (1165)
.+..++.+..+. +|++|-+.+|. +..++.. |..++.|++|||++|.....+|..|++|.+||+|+++++. +..+|
T Consensus 534 ~~~~~~~~~~~~-~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP 611 (889)
T KOG4658|consen 534 KIEHIAGSSENP-KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLP 611 (889)
T ss_pred chhhccCCCCCC-ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccc
Confidence 556666665443 79999999986 6677654 6889999999999999999999999999999999999999 78999
Q ss_pred CCcccccccceeceEEeccccCCCccccCCccccccceeeccccCCCchhhhhHhhcCCCcCccceEeeeccccccCccc
Q 038861 476 KGFGKLTCLLTLGRFVVGKVSGSGLRELKSLTHLQETLRISKLENVKDVCDACEAQLNNKVNLKALLLEWSIWHVRNLDQ 555 (1165)
Q Consensus 476 ~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~ 555 (1165)
.++++|++|.+|........... ..-...|. +|+.|.+..+.
T Consensus 612 ~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~-----------------------------~Lr~L~l~~s~-------- 653 (889)
T KOG4658|consen 612 SGLGNLKKLIYLNLEVTGRLESI-PGILLELQ-----------------------------SLRVLRLPRSA-------- 653 (889)
T ss_pred hHHHHHHhhheeccccccccccc-cchhhhcc-----------------------------cccEEEeeccc--------
Confidence 99999999999976655433211 11111122 23333332221
Q ss_pred hhhHHhhhccCCCCcCcceEEEEeeCCCCCCcCcCCCCCCce----eEEeEcccCCCCCCCCCCCCCCCceeeecCCCCc
Q 038861 556 CEFETRVLSMLKPYQDVQELTITGYGGPKFPIWLGDSSFSKL----VRLKFEHCGTSTSLPSVGQLPFLKELVISGMGRV 631 (1165)
Q Consensus 556 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L----~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~~ 631 (1165)
..........+..+.+|+.+.+.......+.... .+..| +.+.+..|......+++..+.+|+.|.+.+|...
T Consensus 654 ~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~---~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 654 LSNDKLLLKELENLEHLENLSITISSVLLLEDLL---GMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred cccchhhHHhhhcccchhhheeecchhHhHhhhh---hhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCc
Confidence 0111112233344555555555432220000000 11222 2333344555555557888999999999998776
Q ss_pred eEeCccccCCCCccCCCCcceeeccccccccccccCCCCCcccCcCCccceeeecCCcccccCCC
Q 038861 632 KSVGSEFYGSSCSVPFPSLETLYFANMQEWEEWIPFGSGQEVDEVFPKLRKLSLFSCSKLQGALP 696 (1165)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p 696 (1165)
+..............|+++..+.+.+|....+.... ...|+|+.|.+.+|..+...+|
T Consensus 731 e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~-------~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 731 EIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL-------LFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred hhhcccccccchhhhHHHHHHHHhhccccccccchh-------hccCcccEEEEecccccccCCC
Confidence 543322211100001445555555554433332211 1246677777776666653333
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.76 E-value=1.3e-09 Score=106.79 Aligned_cols=105 Identities=20% Similarity=0.137 Sum_probs=59.7
Q ss_pred CCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceE
Q 038861 1007 NLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESL 1085 (1165)
Q Consensus 1007 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L 1085 (1165)
..+.|++|+|++|.+.. +.++..-+|.++.|++|+|.+... ..++.+++|+.||||+|.+. .+..+ ..+.|.++|
T Consensus 282 TWq~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred hHhhhhhccccccchhh-hhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence 34566666777666433 234444456666777776665543 23666666666777666663 22222 456666666
Q ss_pred EEecCCCCCcccccccccCCCCcEEEEecCCCC
Q 038861 1086 EVHDLKISKPLFEWGLNKFSSLRELQITGGCPV 1118 (1165)
Q Consensus 1086 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 1118 (1165)
.++.|.+.. -.++.++-+|.+||+++|.++
T Consensus 358 ~La~N~iE~---LSGL~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 358 KLAQNKIET---LSGLRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred ehhhhhHhh---hhhhHhhhhheeccccccchh
Confidence 666666543 113555666666666665443
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.76 E-value=2.9e-09 Score=101.63 Aligned_cols=124 Identities=16% Similarity=0.080 Sum_probs=41.1
Q ss_pred CccceeeeecccccccCCcccC-CCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceee
Q 038861 985 TSLEVIAISYLENLKSLPAGLH-NLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLE 1063 (1165)
Q Consensus 985 ~~L~~L~L~~n~~~~~~p~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 1063 (1165)
..+++|+|++|.+... +.++ .+.+|+.|++++|.+... +.+..++.|+.|++++|.+....+.....+++|++|+
T Consensus 19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 4566666666666443 2344 466777777777775543 2466677777777777776653222223577777777
Q ss_pred eccCCCCcccCCC---CCCCCcceEEEecCCCCCcc--cccccccCCCCcEEEEe
Q 038861 1064 IGWCRSLVSFPED---GFPTNLESLEVHDLKISKPL--FEWGLNKFSSLRELQIT 1113 (1165)
Q Consensus 1064 l~~n~~~~~~p~~---~~~~~L~~L~l~~n~~~~~~--~~~~~~~l~~L~~L~l~ 1113 (1165)
+++|++. .+.+. ..+++|+.|++.+|+++..- -...+..+|+|+.||-.
T Consensus 95 L~~N~I~-~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 95 LSNNKIS-DLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CcCCcCC-ChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 7777773 33322 45677777777777776321 11234557777777643
No 39
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.73 E-value=1.7e-07 Score=97.47 Aligned_cols=151 Identities=23% Similarity=0.279 Sum_probs=90.3
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHH-HHHhc
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKL-EKELI 102 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~ 102 (1165)
.+.-..+||++|+||||||+.++. .....| ..++...+-.. +..+..+.- +....
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvk-----------------dlr~i~e~a~~~~~~ 102 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVK-----------------DLREIIEEARKNRLL 102 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHH-----------------HHHHHHHHHHHHHhc
Confidence 456678999999999999999985 233333 22322221111 111222222 12235
Q ss_pred CceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEE--ecCchHH--H-HhhcccceeeCCCCCHHHHHHHHhhcccCC
Q 038861 103 KKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIV--TTRNRVV--A-ERVGSVREYPLGELSKEDCLRVLTQHSLGA 177 (1165)
Q Consensus 103 ~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iii--TtR~~~~--~-~~~~~~~~~~l~~l~~~e~~~lf~~~~~~~ 177 (1165)
+++.+|++|.|+.-+-.+-+.+ ++....|..|+| ||.++.. - .......++++++|+.+|-.+++.+.+...
T Consensus 103 gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~ 179 (436)
T COG2256 103 GRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDE 179 (436)
T ss_pred CCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhh
Confidence 8899999999977544433333 444556777777 6666531 1 112345789999999999999988833222
Q ss_pred CCCCC---CcchHHHHHHHHHHcCCCc
Q 038861 178 TDFNT---HQSLKEVREKIAMKCKGLP 201 (1165)
Q Consensus 178 ~~~~~---~~~~~~~~~~i~~~~~g~P 201 (1165)
...-+ ..-.+++...+++.++|=-
T Consensus 180 ~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 180 ERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred hcCCCcccccCCHHHHHHHHHhcCchH
Confidence 21111 1112367778888888854
No 40
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=2.4e-09 Score=111.25 Aligned_cols=176 Identities=17% Similarity=0.035 Sum_probs=108.9
Q ss_pred CCccEEEEcCCCCchhhh--hh-cccCccceeeeecccccccCCcc-cCCCCCCCEEEEeCCCCCc-cccCCCCCCCCcC
Q 038861 962 QALKYLEVSYCSKLESLA--ER-LDNTSLEVIAISYLENLKSLPAG-LHNLHHLQELKVYGCPNLE-SFPEGGLPSTKLT 1036 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~~~--~~-~~~~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~ 1036 (1165)
++++.||++.|-+..-.+ .. -..++|+.|+|+.|.+.--..+. -..+++|+.|.|++|.+.. .+-.....+|+|+
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~ 225 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE 225 (505)
T ss_pred CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence 568888888874332211 11 12288888888888775433222 1246788888888888663 2223445567888
Q ss_pred eEEeecCCCCCcCCcccCCCCCCceeeeccCCCCccc--CCCCCCCCcceEEEecCCCCCcccccc-----cccCCCCcE
Q 038861 1037 KLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSF--PEDGFPTNLESLEVHDLKISKPLFEWG-----LNKFSSLRE 1109 (1165)
Q Consensus 1037 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--p~~~~~~~L~~L~l~~n~~~~~~~~~~-----~~~l~~L~~ 1109 (1165)
.|++++|+....-......++.|+.|+|++|+++... +..+.++.|+.|.++.|.+.....+.. ...+++|++
T Consensus 226 ~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~ 305 (505)
T KOG3207|consen 226 VLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEY 305 (505)
T ss_pred HhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccccccee
Confidence 8888888644444445566778888888888885433 223778888888888888775433321 345777888
Q ss_pred EEEecCCCCcccCC---CCCCcccEEEecCC
Q 038861 1110 LQITGGCPVLLSSP---WFPASLTVLHISYM 1137 (1165)
Q Consensus 1110 L~l~~n~~~~~~~~---~~~~~L~~L~l~~~ 1137 (1165)
|+++.|.+.....- ...++|+.|.+..|
T Consensus 306 L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 306 LNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred eecccCccccccccchhhccchhhhhhcccc
Confidence 88777665433322 13345555554443
No 41
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=3.3e-09 Score=110.31 Aligned_cols=158 Identities=14% Similarity=0.013 Sum_probs=96.2
Q ss_pred CCccEEEEcCCCCchhhhhhccc--Cccceeeeeccccccc-CCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeE
Q 038861 962 QALKYLEVSYCSKLESLAERLDN--TSLEVIAISYLENLKS-LPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKL 1038 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~~~~~~~~--~~L~~L~L~~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 1038 (1165)
++|+.|+++.|....-....... ++|+.|.|+.|.+... +-.....+|+|+.|+|.+|............+..|++|
T Consensus 172 p~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~L 251 (505)
T KOG3207|consen 172 PSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQEL 251 (505)
T ss_pred ccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhc
Confidence 56888888887654322222222 7788888888877521 22234457788888888885443333344455678888
Q ss_pred EeecCCCCCcCC-cccCCCCCCceeeeccCCCCcc-cCCC------CCCCCcceEEEecCCCCCcccccccccCCCCcEE
Q 038861 1039 TIGYCENLKALP-NCMHNLTSLLHLEIGWCRSLVS-FPED------GFPTNLESLEVHDLKISKPLFEWGLNKFSSLREL 1110 (1165)
Q Consensus 1039 ~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~-~p~~------~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 1110 (1165)
+|++|++..... ...+.++.|+.|+++.|.+... +|+. ..+++|+.|++..|++..--.-..+..+++|+.|
T Consensus 252 dLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l 331 (505)
T KOG3207|consen 252 DLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHL 331 (505)
T ss_pred cccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhh
Confidence 888887766431 2356777888888887776321 1222 4577888888888887542222234456667777
Q ss_pred EEecCCCCc
Q 038861 1111 QITGGCPVL 1119 (1165)
Q Consensus 1111 ~l~~n~~~~ 1119 (1165)
.+.+|....
T Consensus 332 ~~~~n~ln~ 340 (505)
T KOG3207|consen 332 RITLNYLNK 340 (505)
T ss_pred hcccccccc
Confidence 766654433
No 42
>PRK06893 DNA replication initiation factor; Validated
Probab=98.67 E-value=1e-07 Score=97.92 Aligned_cols=155 Identities=18% Similarity=0.175 Sum_probs=93.6
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCce
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKKK 105 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 105 (1165)
+.+.|+|++|+|||+||+++++. .......+.|+.+.... .... .+.+.++ +.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~~---~~~~---------------------~~~~~~~-~~ 92 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKSQ---YFSP---------------------AVLENLE-QQ 92 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHhh---hhhH---------------------HHHhhcc-cC
Confidence 56899999999999999999964 33333455666653110 0000 1111122 23
Q ss_pred EEEEEeCCCCCC-ccchh-hhhcccCCC-CCCcEEE-EecCc---------hHHHHhhcccceeeCCCCCHHHHHHHHhh
Q 038861 106 FLLVLDDMWNEN-YNDWE-LLNRPFKAG-TSGSKII-VTTRN---------RVVAERVGSVREYPLGELSKEDCLRVLTQ 172 (1165)
Q Consensus 106 ~LlvlDdv~~~~-~~~~~-~l~~~~~~~-~~~~~ii-iTtR~---------~~~~~~~~~~~~~~l~~l~~~e~~~lf~~ 172 (1165)
-+||+||+|... ..+|+ .+...+... ..|..+| +|++. +++...+.....++++++++++.++++.+
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~ 172 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQR 172 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHH
Confidence 489999997642 23343 222222221 2355554 44543 24444445556899999999999999998
Q ss_pred cccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHhhh
Q 038861 173 HSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLGGLL 211 (1165)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 211 (1165)
.+..... .. ..++..-|++++.|-.-.+..+-..+
T Consensus 173 ~a~~~~l-~l---~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 173 NAYQRGI-EL---SDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHcCC-CC---CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 8764432 22 23788889999998776665554444
No 43
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.9e-06 Score=93.84 Aligned_cols=291 Identities=15% Similarity=0.130 Sum_probs=166.8
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
.+||++++++...|...-. ++.+.-+.|+|.+|+|||+.++.+....+....-..++++++....+..+++..++..+
T Consensus 20 ~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~ 97 (366)
T COG1474 20 PHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKL 97 (366)
T ss_pred cccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHc
Confidence 3799999999988875432 12233489999999999999999996432221111268999999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHhc--CceEEEEEeCCCCCCccchhhhhcccCCCCC-CcEE--EEecCchHHHHhhc----
Q 038861 81 SNVTVNDNDLNSLQEKLEKELI--KKKFLLVLDDMWNENYNDWELLNRPFKAGTS-GSKI--IVTTRNRVVAERVG---- 151 (1165)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~-~~~i--iiTtR~~~~~~~~~---- 151 (1165)
+..........+....+.+.+. ++.+++|||+++.-....-+.+...+..... .++| |..+-+......+.
T Consensus 98 ~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~ 177 (366)
T COG1474 98 GKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVK 177 (366)
T ss_pred CCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhh
Confidence 8666666777778888877774 5789999999954322111223222222222 3433 33333333222221
Q ss_pred ---ccceeeCCCCCHHHHHHHHhhcccCC-CCCCCCcchHHHHHHHHHHcCC-CchHHHHH--HhhhcCCCC-----hhH
Q 038861 152 ---SVREYPLGELSKEDCLRVLTQHSLGA-TDFNTHQSLKEVREKIAMKCKG-LPLAAKTL--GGLLRGKHD-----PKD 219 (1165)
Q Consensus 152 ---~~~~~~l~~l~~~e~~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~--~~~l~~~~~-----~~~ 219 (1165)
....+..+|-+.+|-.+.+..++-.. ......++..+.+..++..-+| .=.||.++ |+.++.+.. ...
T Consensus 178 s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~~~ 257 (366)
T COG1474 178 SSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSEDH 257 (366)
T ss_pred hccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCCcCHHH
Confidence 22347789999999999999886322 1112333444555555555554 44555543 333333211 111
Q ss_pred HHHHHhccccccCCCCCChhHHHHhccccCcHHHHhHhhhhcCCCCCCccChHHHHH--HHHHcCCcccccCcccHHHHH
Q 038861 220 WEIVLNADVWDFADDGCDIIPALKVSYRFLPPQLKQCFAYCSLFPKDYEFEEEEIIL--LWTAEGFLDQECDGRKMEELG 297 (1165)
Q Consensus 220 w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~la~f~~~~~i~~~~l~~--~w~~~~~~~~~~~~~~~~~~~ 297 (1165)
-..+... --.....-....|+.++|..+..++... ..+....+-. .++.+.+-. .+...
T Consensus 258 v~~a~~~----------~~~~~~~~~~~~L~~~~ki~L~~i~~~~--~~~~~~~~y~~y~~~~~~~~~-------~~~~~ 318 (366)
T COG1474 258 VREAQEE----------IERDVLEEVLKTLPLHQKIVLLAIVELT--VEISTGELYDVYESLCERLRT-------SQRRF 318 (366)
T ss_pred HHHHHHH----------hhHHHHHHHHHcCCHhHHHHHHHHHHhc--CCCChHHHHHHHHHHHhhhCc-------hHHHH
Confidence 0111000 0112233447788888887766655443 2233333222 111111100 23345
Q ss_pred HHHHHHHHHcCcccc
Q 038861 298 REFVRELHSRSLFHQ 312 (1165)
Q Consensus 298 ~~~l~~L~~~~li~~ 312 (1165)
.+++.+|...+++..
T Consensus 319 ~~ii~~L~~lgiv~~ 333 (366)
T COG1474 319 SDIISELEGLGIVSA 333 (366)
T ss_pred HHHHHHHHhcCeEEe
Confidence 567888888888764
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.65 E-value=3.4e-08 Score=117.31 Aligned_cols=107 Identities=20% Similarity=0.199 Sum_probs=81.4
Q ss_pred cceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeecc
Q 038861 987 LEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGW 1066 (1165)
Q Consensus 987 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 1066 (1165)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+.++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 56667777777777777788888888888888887777777777888888888888888877888788888888888888
Q ss_pred CCCCcccCCC--CCCCCcceEEEecCCCC
Q 038861 1067 CRSLVSFPED--GFPTNLESLEVHDLKIS 1093 (1165)
Q Consensus 1067 n~~~~~~p~~--~~~~~L~~L~l~~n~~~ 1093 (1165)
|++.+.+|.. ..+.++..+++.+|...
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccc
Confidence 8887777765 23456667777777644
No 45
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.65 E-value=1.4e-08 Score=96.88 Aligned_cols=106 Identities=25% Similarity=0.162 Sum_probs=34.5
Q ss_pred cCCCCCCCEEEEeCCCCCccccCCCC-CCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC--CCCCC
Q 038861 1005 LHNLHHLQELKVYGCPNLESFPEGGL-PSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED--GFPTN 1081 (1165)
Q Consensus 1005 ~~~l~~L~~L~L~~n~~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~--~~~~~ 1081 (1165)
+.+..++++|+|++|.+...- .+. .+.+|+.|++++|.+... + .+..++.|+.|++++|++. .+++. ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred ccccccccccccccccccccc--chhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence 345567888889888866532 233 467888888888887664 2 4778888888888888884 34322 35788
Q ss_pred cceEEEecCCCCCcccccccccCCCCcEEEEecC
Q 038861 1082 LESLEVHDLKISKPLFEWGLNKFSSLRELQITGG 1115 (1165)
Q Consensus 1082 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 1115 (1165)
|+.|++++|+|...-.-..+..+++|+.|++.||
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCC
Confidence 8888888888875333334667778888888776
No 46
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.65 E-value=2.6e-07 Score=96.13 Aligned_cols=171 Identities=17% Similarity=0.125 Sum_probs=98.6
Q ss_pred hHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCC
Q 038861 4 KKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNV 83 (1165)
Q Consensus 4 ~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~ 83 (1165)
+..++.+.+++.. ...+.+.|+|++|+|||++|+.+++. ........+++++..-. ...
T Consensus 23 ~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~------~~~------- 81 (226)
T TIGR03420 23 AELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELA------QAD------- 81 (226)
T ss_pred HHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHH------HhH-------
Confidence 3455666666532 23467999999999999999999853 22233344555433211 100
Q ss_pred CCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCcc-c-hhhhhcccCC-CCCCcEEEEecCchH---------HHHhhc
Q 038861 84 TVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENYN-D-WELLNRPFKA-GTSGSKIIVTTRNRV---------VAERVG 151 (1165)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~-~-~~~l~~~~~~-~~~~~~iiiTtR~~~---------~~~~~~ 151 (1165)
..+...+.+. -+||+||++..... . .+.+...+.. ...+.++|+|++... +...+.
T Consensus 82 -----------~~~~~~~~~~-~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~ 149 (226)
T TIGR03420 82 -----------PEVLEGLEQA-DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLA 149 (226)
T ss_pred -----------HHHHhhcccC-CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHh
Confidence 0111112222 38999999664322 2 2333332221 123457888887432 122222
Q ss_pred ccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHhhh
Q 038861 152 SVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLGGLL 211 (1165)
Q Consensus 152 ~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 211 (1165)
....+++++++++|...++...+..... +-..+..+.|++.++|.|..+.-+...+
T Consensus 150 ~~~~i~l~~l~~~e~~~~l~~~~~~~~~----~~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 150 WGLVFQLPPLSDEEKIAALQSRAARRGL----QLPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred cCeeEecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2357899999999999988875432221 1223677888889999998877665443
No 47
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.63 E-value=5.7e-08 Score=91.03 Aligned_cols=117 Identities=18% Similarity=0.185 Sum_probs=81.2
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchh---ccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHh
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVR---RHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKEL 101 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~---~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 101 (1165)
.+++.|+|++|+|||+++++++++.... ..-..++|+.+....+...+...++.+++.......+.+++.+.+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 3689999999999999999998642111 0134567999888889999999999999877666566777778888877
Q ss_pred cCc-eEEEEEeCCCCC-CccchhhhhcccCCCCCCcEEEEecCc
Q 038861 102 IKK-KFLLVLDDMWNE-NYNDWELLNRPFKAGTSGSKIIVTTRN 143 (1165)
Q Consensus 102 ~~~-~~LlvlDdv~~~-~~~~~~~l~~~~~~~~~~~~iiiTtR~ 143 (1165)
... ..+||+|+++.- ....++.+..... ..+.++|++.++
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 655 459999999654 4333444433322 567788887775
No 48
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=1.5e-06 Score=96.31 Aligned_cols=187 Identities=16% Similarity=0.169 Sum_probs=105.2
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
||.+..++.+...+..+. -...+.++|+.|+||||+|+.+++........... .+... ....++....
T Consensus 19 iGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~---pc~~c----~~c~~~~~~~ 86 (363)
T PRK14961 19 IGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSN---PCRKC----IICKEIEKGL 86 (363)
T ss_pred cChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCC---CCCCC----HHHHHHhcCC
Confidence 588888888888886432 24567999999999999999998532111000000 00000 0001111000
Q ss_pred cC-----CCCCCCCHHHHHHHHHHHh-----cCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCch-HHHHh
Q 038861 81 SN-----VTVNDNDLNSLQEKLEKEL-----IKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNR-VVAER 149 (1165)
Q Consensus 81 ~~-----~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~-~~~~~ 149 (1165)
.. ........++.. .+.+.+ .+++-++|+|+++......+..+...+...+...++|++|.+. .+...
T Consensus 87 ~~d~~~~~~~~~~~v~~ir-~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 87 CLDLIEIDAASRTKVEEMR-EILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKT 165 (363)
T ss_pred CCceEEecccccCCHHHHH-HHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHH
Confidence 00 000011222221 222221 2455699999997765555666666666555667777766543 33322
Q ss_pred h-cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHH
Q 038861 150 V-GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAA 204 (1165)
Q Consensus 150 ~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 204 (1165)
. .....+++.+++.++..+.+...+...+. .-..+.+..|++.++|.|-.+
T Consensus 166 I~SRc~~~~~~~l~~~el~~~L~~~~~~~g~----~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 166 ILSRCLQFKLKIISEEKIFNFLKYILIKESI----DTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 2 22367999999999999888775433221 112367788999999987543
No 49
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.57 E-value=1.5e-08 Score=99.56 Aligned_cols=128 Identities=19% Similarity=0.131 Sum_probs=87.0
Q ss_pred CCccEEEEcCCCCchhhhhhccc-CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEe
Q 038861 962 QALKYLEVSYCSKLESLAERLDN-TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTI 1040 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L 1040 (1165)
+.|+.+|+++|. +..+.+.... |.++.|++++|.+... ..+..+++|+.|+|++|.+.+. ...-..+-+.+.|.|
T Consensus 284 q~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccc-hhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhh-hhhHhhhcCEeeeeh
Confidence 458888888884 4556666666 8888888888887654 2377788888888888874443 233344567788888
Q ss_pred ecCCCCCcCCcccCCCCCCceeeeccCCCCcc--cCCCCCCCCcceEEEecCCCCCc
Q 038861 1041 GYCENLKALPNCMHNLTSLLHLEIGWCRSLVS--FPEDGFPTNLESLEVHDLKISKP 1095 (1165)
Q Consensus 1041 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~p~~~~~~~L~~L~l~~n~~~~~ 1095 (1165)
++|.+-.. +.+..+-+|..||+++|++... ....+.+|-|+.+.+.+|++.+.
T Consensus 360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 88765332 3466677788888888877322 12237778888888888887753
No 50
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.54 E-value=8.1e-08 Score=74.93 Aligned_cols=59 Identities=19% Similarity=0.177 Sum_probs=31.2
Q ss_pred CCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCC
Q 038861 1010 HLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCR 1068 (1165)
Q Consensus 1010 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 1068 (1165)
+|++|++++|.+....+..|..+++|++|++++|.+....|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555444444455555555555555555544444555555555555555554
No 51
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.53 E-value=2.9e-06 Score=97.45 Aligned_cols=191 Identities=13% Similarity=0.115 Sum_probs=110.0
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHh-
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMS- 79 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~- 79 (1165)
||.+..++.|..++.... -...+.++|+.|+||||+|+.+.+.......... ..+... .....+...
T Consensus 19 IGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~---~PCG~C----~sCr~I~~G~ 86 (830)
T PRK07003 19 VGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS---QPCGVC----RACREIDEGR 86 (830)
T ss_pred cCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC---CCCccc----HHHHHHhcCC
Confidence 688999999999986442 2456789999999999999988753211111100 000000 000111000
Q ss_pred ----ccCCCCCCCCHHHHHHHHHHH----hcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCchH-HHHh-
Q 038861 80 ----ISNVTVNDNDLNSLQEKLEKE----LIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRV-VAER- 149 (1165)
Q Consensus 80 ----l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~-~~~~- 149 (1165)
+..........+++.+.+... ..++.-++|||+++..+...+..+...+.......++|++|.+.. +...
T Consensus 87 h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TI 166 (830)
T PRK07003 87 FVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTV 166 (830)
T ss_pred CceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchh
Confidence 000000112223332222221 124456899999987766667777776665556788888777653 3222
Q ss_pred hcccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCc-hHHHHH
Q 038861 150 VGSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLP-LAAKTL 207 (1165)
Q Consensus 150 ~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~ 207 (1165)
......+.++.++.++..+.+.+.+..... ....+....|++.++|-. -|+.++
T Consensus 167 rSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI----~id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 167 LSRCLQFNLKQMPAGHIVSHLERILGEERI----AFEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred hhheEEEecCCcCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 122367999999999999888876433221 112377888999998854 465554
No 52
>PRK04195 replication factor C large subunit; Provisional
Probab=98.53 E-value=4.2e-06 Score=96.76 Aligned_cols=244 Identities=16% Similarity=0.110 Sum_probs=132.2
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
||+++.++.+.+|+..... +...+.+.|+|++|+||||+|++++++. .++ .+-++.++..+.. ....++...
T Consensus 17 vg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el----~~~-~ielnasd~r~~~-~i~~~i~~~ 88 (482)
T PRK04195 17 VGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDY----GWE-VIELNASDQRTAD-VIERVAGEA 88 (482)
T ss_pred cCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEcccccccHH-HHHHHHHHh
Confidence 6899999999999975431 1226789999999999999999998643 122 2233333322222 222222211
Q ss_pred cCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCc----cchhhhhcccCCCCCCcEEEEecCch-HHHH-hh-ccc
Q 038861 81 SNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENY----NDWELLNRPFKAGTSGSKIIVTTRNR-VVAE-RV-GSV 153 (1165)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~----~~~~~l~~~~~~~~~~~~iiiTtR~~-~~~~-~~-~~~ 153 (1165)
.... .....++-+||+|+++.... ..+..+...+.. .+..||+|+.+. .... .+ ...
T Consensus 89 ~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrsr~ 152 (482)
T PRK04195 89 ATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRNAC 152 (482)
T ss_pred hccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhccc
Confidence 1100 00113577999999966432 224444444332 334466665432 1111 11 233
Q ss_pred ceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHhhhcCCCC---hhHHHHHHhccccc
Q 038861 154 REYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLGGLLRGKHD---PKDWEIVLNADVWD 230 (1165)
Q Consensus 154 ~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~---~~~w~~~~~~~~~~ 230 (1165)
..+++.+++.++....+...+...+. .. ..++...|++.++|-.-.+......+..... .........
T Consensus 153 ~~I~f~~~~~~~i~~~L~~i~~~egi-~i---~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~----- 223 (482)
T PRK04195 153 LMIEFKRLSTRSIVPVLKRICRKEGI-EC---DDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR----- 223 (482)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc-----
Confidence 57889999999988888776533322 11 2377889999999866554433333332211 121221211
Q ss_pred cCCCCCChhHHHHhccc-cCcHHHHhHhhhhcCCCCCCccChHHHHHHHHHcCCccc
Q 038861 231 FADDGCDIIPALKVSYR-FLPPQLKQCFAYCSLFPKDYEFEEEEIILLWTAEGFLDQ 286 (1165)
Q Consensus 231 ~~~~~~~~~~~l~~sy~-~L~~~~k~~fl~la~f~~~~~i~~~~l~~~w~~~~~~~~ 286 (1165)
.+....++.++..-+. .-...+...+..+ .++. ..+..|+.+.+...
T Consensus 224 -~d~~~~if~~l~~i~~~k~~~~a~~~~~~~-------~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 -RDREESIFDALDAVFKARNADQALEASYDV-------DEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred -CCCCCCHHHHHHHHHCCCCHHHHHHHHHcc-------cCCH-HHHHHHHHhccccc
Confidence 2223466777765554 3333344333221 2233 35667999988654
No 53
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=1.6e-06 Score=98.43 Aligned_cols=188 Identities=14% Similarity=0.130 Sum_probs=107.4
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++...... |+... ....=...+.+...-
T Consensus 18 IGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~~-pCg~C~sC~~I~~g~ 85 (702)
T PRK14960 18 VGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTST-PCEVCATCKAVNEGR 85 (702)
T ss_pred cCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCCC-CCccCHHHHHHhcCC
Confidence 689999999999996543 246789999999999999998875321110 00000 000000001110000
Q ss_pred cC-----CCCCCCCHHHHHHHHHHH----hcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCch-HHHHh-
Q 038861 81 SN-----VTVNDNDLNSLQEKLEKE----LIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNR-VVAER- 149 (1165)
Q Consensus 81 ~~-----~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~-~~~~~- 149 (1165)
.. ........++..+.+... ..+++-++|+|+++..+......+...+.....+.++|++|.+. .+...
T Consensus 86 hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TI 165 (702)
T PRK14960 86 FIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITV 165 (702)
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHH
Confidence 00 000111233222222111 23566799999997766556666666665555667777776653 22211
Q ss_pred hcccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHH
Q 038861 150 VGSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAA 204 (1165)
Q Consensus 150 ~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 204 (1165)
......+++++++.++..+.+...+...+. ....+....|++.++|-+-.+
T Consensus 166 lSRCq~feFkpLs~eEI~k~L~~Il~kEgI----~id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 166 ISRCLQFTLRPLAVDEITKHLGAILEKEQI----AADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred HHhhheeeccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 233368999999999998888766533221 122367788999999876433
No 54
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=1.8e-06 Score=101.23 Aligned_cols=189 Identities=13% Similarity=0.128 Sum_probs=109.1
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHH--
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILM-- 78 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~-- 78 (1165)
||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++...-....... .+... .....+..
T Consensus 19 IGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~---pCg~C----~sC~~i~~g~ 86 (944)
T PRK14949 19 VGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTAT---PCGVC----SSCVEIAQGR 86 (944)
T ss_pred cCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCC---CCCCc----hHHHHHhcCC
Confidence 688888888888886543 23456899999999999999998642211110000 00000 00000000
Q ss_pred -----hccCCCCCCCCHHHH---HHHHH-HHhcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCch-HHHH
Q 038861 79 -----SISNVTVNDNDLNSL---QEKLE-KELIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNR-VVAE 148 (1165)
Q Consensus 79 -----~l~~~~~~~~~~~~~---~~~l~-~~l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~-~~~~ 148 (1165)
.+... .....+.+ .+.+. .-..+++-++|+|+++.........+...+.......++|++|.+. .+..
T Consensus 87 ~~DviEidAa--s~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~ 164 (944)
T PRK14949 87 FVDLIEVDAA--SRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (944)
T ss_pred CceEEEeccc--cccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchH
Confidence 00000 01122222 11111 1124667799999998777667777777666555667666665543 3332
Q ss_pred h-hcccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCch-HHHHH
Q 038861 149 R-VGSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPL-AAKTL 207 (1165)
Q Consensus 149 ~-~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 207 (1165)
. ......|++++++.++..+++.+.+..... ....+.+..|++.++|.|- |+.++
T Consensus 165 TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI----~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 165 TVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL----PFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred HHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 223368999999999999998875432211 1223678889999999885 44443
No 55
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.51 E-value=3e-09 Score=114.17 Aligned_cols=167 Identities=22% Similarity=0.213 Sum_probs=112.0
Q ss_pred ccEEEEcCCCCchhhhhhccc-CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeec
Q 038861 964 LKYLEVSYCSKLESLAERLDN-TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGY 1042 (1165)
Q Consensus 964 L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 1042 (1165)
....|++.|.+.+ +|..... -.|+.+.|.+|.+ ..+|..+.++..|+.|+|+.|.+ ..+|..+..+ -|+.|-+++
T Consensus 77 t~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~l-pLkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRNRFSE-LPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQL-SHLPDGLCDL-PLKVLIVSN 152 (722)
T ss_pred hhhhhcccccccc-CchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccchh-hcCChhhhcC-cceeEEEec
Confidence 4567788875544 4444333 7788888888887 56778888888899999998884 4455555554 388888887
Q ss_pred CCCCCcCCcccCCCCCCceeeeccCCCCcccCCCCCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCCCCcccC
Q 038861 1043 CENLKALPNCMHNLTSLLHLEIGWCRSLVSFPEDGFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCPVLLSS 1122 (1165)
Q Consensus 1043 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 1122 (1165)
|++ +.+|..++.++.|..|+.+.|.+....+..+.+.+|+.|.+..|++.. ++++ +. .-.|..||+|.|.+..++.
T Consensus 153 Nkl-~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~-lp~E-l~-~LpLi~lDfScNkis~iPv 228 (722)
T KOG0532|consen 153 NKL-TSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED-LPEE-LC-SLPLIRLDFSCNKISYLPV 228 (722)
T ss_pred Ccc-ccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh-CCHH-Hh-CCceeeeecccCceeecch
Confidence 775 557777888888888888888885444444788888888888888765 3443 33 3345666666655444433
Q ss_pred CC-CCCcccEEEecCCC
Q 038861 1123 PW-FPASLTVLHISYMP 1138 (1165)
Q Consensus 1123 ~~-~~~~L~~L~l~~~~ 1138 (1165)
.. -...|++|-|.+||
T Consensus 229 ~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 229 DFRKMRHLQVLQLENNP 245 (722)
T ss_pred hhhhhhhheeeeeccCC
Confidence 21 13455555555544
No 56
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=2.8e-06 Score=92.52 Aligned_cols=175 Identities=16% Similarity=0.213 Sum_probs=109.1
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCc----chhccCCceEEEEE-cCCCCHHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDD----RVRRHFEIKAWTFV-SEDFDVFRVTKS 75 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~----~~~~~f~~~~w~~~-~~~~~~~~~~~~ 75 (1165)
+|-+..++.+..++..+. -.....++|+.|+||||+|+.++... ....+.+...|... +....+.++ ++
T Consensus 7 ~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~ 80 (313)
T PRK05564 7 IGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RN 80 (313)
T ss_pred cCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HH
Confidence 577888888988885443 24577899999999999999998531 11233343334321 111122221 11
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCchHHH-Hh-hccc
Q 038861 76 ILMSISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRVVA-ER-VGSV 153 (1165)
Q Consensus 76 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~~~-~~-~~~~ 153 (1165)
+...+... -..+++-++|+|+++..+...+..+...+...++++.+|++|.+.+.. .. ....
T Consensus 81 ~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc 144 (313)
T PRK05564 81 IIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRC 144 (313)
T ss_pred HHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhc
Confidence 11211110 012455678888886666667888888888777889888888765322 11 1223
Q ss_pred ceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHH
Q 038861 154 REYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAK 205 (1165)
Q Consensus 154 ~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 205 (1165)
..+++.++++++....+.....+. ..+.+..++..++|.|..+.
T Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 145 QIYKLNRLSKEEIEKFISYKYNDI--------KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred eeeeCCCcCHHHHHHHHHHHhcCC--------CHHHHHHHHHHcCCCHHHHH
Confidence 688999999999988776543111 12457788999999886544
No 57
>PLN03150 hypothetical protein; Provisional
Probab=98.50 E-value=1.3e-07 Score=112.55 Aligned_cols=105 Identities=17% Similarity=0.146 Sum_probs=94.7
Q ss_pred CCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceEEEe
Q 038861 1010 HLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESLEVH 1088 (1165)
Q Consensus 1010 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l~ 1088 (1165)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++.+.+|.. +.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4789999999999999999999999999999999999999999999999999999999999999987 889999999999
Q ss_pred cCCCCCccccccccc-CCCCcEEEEecC
Q 038861 1089 DLKISKPLFEWGLNK-FSSLRELQITGG 1115 (1165)
Q Consensus 1089 ~n~~~~~~~~~~~~~-l~~L~~L~l~~n 1115 (1165)
+|++.+.+|.. +.. +.++..+++.+|
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDN 525 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCC
Confidence 99999988776 444 456778888876
No 58
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.50 E-value=9.2e-09 Score=110.51 Aligned_cols=86 Identities=33% Similarity=0.549 Sum_probs=49.7
Q ss_pred ccccccccccCcccccccccCCCCccccCcccccCCCccEEeccCcchhccccccccCCCCcceeeccCCCCCCCCCCCc
Q 038861 399 NIFNLPNEIGNLRHLRFLNLSGTNIQILPESINSLYNLHTILLEDCRRLKKLCNDMGNLTKLHHLRNSNVHSLGEMPKGF 478 (1165)
Q Consensus 399 ~l~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i 478 (1165)
.+..+|..++++..|.||||+.|+++.+|..++.|+ |++|.+++ +.++.+|..++.+..|.+||.+.|. +..+|..+
T Consensus 109 ~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql 185 (722)
T KOG0532|consen 109 CIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQL 185 (722)
T ss_pred cceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhhhh-hhhchHHh
Confidence 345556666666666666666666666666555543 56666654 3455556666666666666666665 55555555
Q ss_pred cccccccee
Q 038861 479 GKLTCLLTL 487 (1165)
Q Consensus 479 ~~L~~L~~L 487 (1165)
+.+.+|+.|
T Consensus 186 ~~l~slr~l 194 (722)
T KOG0532|consen 186 GYLTSLRDL 194 (722)
T ss_pred hhHHHHHHH
Confidence 555555444
No 59
>PF13173 AAA_14: AAA domain
Probab=98.49 E-value=3.8e-07 Score=84.23 Aligned_cols=118 Identities=26% Similarity=0.251 Sum_probs=75.9
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCce
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKKK 105 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 105 (1165)
+++.|.|+.|+||||++++++.+.. ....+++++..+....... ..+ ..+.+.+....++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~----------------~~~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA----------------DPD-LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh----------------hhh-hHHHHHHhhccCC
Confidence 5899999999999999999985422 2344556655443211000 000 2233333344477
Q ss_pred EEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCchHHHHh-----h-cccceeeCCCCCHHH
Q 038861 106 FLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRVVAER-----V-GSVREYPLGELSKED 165 (1165)
Q Consensus 106 ~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~~~~~-----~-~~~~~~~l~~l~~~e 165 (1165)
.++++|+++.. .+|......+....+..+|++|+........ + +....+++.||+..|
T Consensus 63 ~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 63 KYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred cEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 89999999554 5677666666665567899999998765532 1 223568899999876
No 60
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.49 E-value=2.2e-06 Score=95.52 Aligned_cols=193 Identities=13% Similarity=0.104 Sum_probs=104.1
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCC-ceEEEEEcCCCCHHHHHHHHH--
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFE-IKAWTFVSEDFDVFRVTKSIL-- 77 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~w~~~~~~~~~~~~~~~i~-- 77 (1165)
+|++..++.+.+++... ..+.+.++|++|+||||+|+.+++... ...+. ..+.+++.+..+ .....+.
T Consensus 18 ~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~--~~~~~~~~~ 88 (337)
T PRK12402 18 LGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFD--QGKKYLVED 88 (337)
T ss_pred cCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhh--cchhhhhcC
Confidence 58999999999888543 234578999999999999999885321 11111 223333322110 0000000
Q ss_pred ----HhccCC-CCCCCCHHHHHHHHHHHh-----cCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCch-HH
Q 038861 78 ----MSISNV-TVNDNDLNSLQEKLEKEL-----IKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNR-VV 146 (1165)
Q Consensus 78 ----~~l~~~-~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~-~~ 146 (1165)
..+... .......+.....++... .+.+-+||+||++.........+...+......+++|+|+... .+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~ 168 (337)
T PRK12402 89 PRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKL 168 (337)
T ss_pred cchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhC
Confidence 000000 000001111111121111 1334589999996554333444444443344557787777543 22
Q ss_pred HHhh-cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHH
Q 038861 147 AERV-GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKT 206 (1165)
Q Consensus 147 ~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 206 (1165)
...+ .....+++.+++.++..+++...+...+.. -..+.++.+++.++|.+-.+..
T Consensus 169 ~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~----~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 169 IPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD----YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred chhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHH
Confidence 2222 223578889999999988888765332211 1237888899999987655443
No 61
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.49 E-value=1.5e-07 Score=73.36 Aligned_cols=61 Identities=18% Similarity=0.139 Sum_probs=53.2
Q ss_pred CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCC
Q 038861 985 TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCEN 1045 (1165)
Q Consensus 985 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~ 1045 (1165)
++|++|++++|.+....+..|.++++|++|++++|.+....+..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4678888888888776678899999999999999998888888999999999999999874
No 62
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.49 E-value=8.9e-07 Score=85.55 Aligned_cols=125 Identities=16% Similarity=0.077 Sum_probs=71.9
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
+||++.++.+...+... ..+.+.|+|++|+|||++|+++++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 58999999999998543 235789999999999999999996432 222345555544332222111111100
Q ss_pred cCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCcc---chhhhhcccCCC---CCCcEEEEecCchH
Q 038861 81 SNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENYN---DWELLNRPFKAG---TSGSKIIVTTRNRV 145 (1165)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~---~~~~l~~~~~~~---~~~~~iiiTtR~~~ 145 (1165)
............++.++|+||++..... .+.......... ..+.+||+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0111112223456789999999753222 222222222221 36788888888654
No 63
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.48 E-value=9.4e-07 Score=99.92 Aligned_cols=174 Identities=19% Similarity=0.198 Sum_probs=100.8
Q ss_pred CCchHHHHH---HHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHH
Q 038861 1 YGRKKDKDE---IVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSIL 77 (1165)
Q Consensus 1 vGR~~~~~~---l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~ 77 (1165)
||++..+.. +.+++... ....+.|+|++|+||||+|+.+++. .... |+.+.........
T Consensus 15 vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~----- 76 (413)
T PRK13342 15 VGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKD----- 76 (413)
T ss_pred cCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHH-----
Confidence 577777665 77777433 3456888999999999999999853 2222 2222221111111
Q ss_pred HhccCCCCCCCCHHHHHHHHHHH-hcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEE--ecCchH--HHHh-hc
Q 038861 78 MSISNVTVNDNDLNSLQEKLEKE-LIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIV--TTRNRV--VAER-VG 151 (1165)
Q Consensus 78 ~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iii--TtR~~~--~~~~-~~ 151 (1165)
.....+..... ..+++.+|++|+++.....+.+.+...+. .+..++| ||.+.. +... ..
T Consensus 77 ------------ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~S 141 (413)
T PRK13342 77 ------------LREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLS 141 (413)
T ss_pred ------------HHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhc
Confidence 11111222111 14577899999998765555555544443 2444444 344432 1111 12
Q ss_pred ccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHHH
Q 038861 152 SVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLG 208 (1165)
Q Consensus 152 ~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 208 (1165)
....+++.++++++..+++.+.+....... .+-..+..+.|++.|+|.+..+..+.
T Consensus 142 R~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 142 RAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred cceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 336789999999999999987543211100 02224677889999999987665443
No 64
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.47 E-value=3.1e-07 Score=92.25 Aligned_cols=45 Identities=22% Similarity=0.371 Sum_probs=31.8
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCC
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
|||+++++++...+... .....+.+.|+|++|+|||+|+++++..
T Consensus 3 vgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 3 VGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 79999999999999521 3345689999999999999999999854
No 65
>PLN03025 replication factor C subunit; Provisional
Probab=98.46 E-value=1.7e-06 Score=94.27 Aligned_cols=176 Identities=14% Similarity=0.122 Sum_probs=98.0
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCc-eEEEEEcCCCCHHHHHHHHHHh
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEI-KAWTFVSEDFDVFRVTKSILMS 79 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~-~~w~~~~~~~~~~~~~~~i~~~ 79 (1165)
+|.++.++.|.+++... ..+-+.++|++|+||||+|+.+++.. ....|.. ++-+..++..+.. ..+.....
T Consensus 16 ~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~i~~ 87 (319)
T PLN03025 16 VGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNKIKM 87 (319)
T ss_pred cCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHHHHH
Confidence 57777788888777432 23347799999999999999998532 1222221 1111112111111 11111111
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCch-HHHHhh-cccceee
Q 038861 80 ISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNR-VVAERV-GSVREYP 157 (1165)
Q Consensus 80 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~-~~~~~~-~~~~~~~ 157 (1165)
+...... .-.++.-++|+|+++.........+...+......+++|+++... .+.... .....++
T Consensus 88 ~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~ 154 (319)
T PLN03025 88 FAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVR 154 (319)
T ss_pred HHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhccc
Confidence 1000000 001346699999997765544455544444434567777766442 222111 1225789
Q ss_pred CCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCc
Q 038861 158 LGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLP 201 (1165)
Q Consensus 158 l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 201 (1165)
++++++++..+.+...+...+... ..+....|++.++|-.
T Consensus 155 f~~l~~~~l~~~L~~i~~~egi~i----~~~~l~~i~~~~~gDl 194 (319)
T PLN03025 155 FSRLSDQEILGRLMKVVEAEKVPY----VPEGLEAIIFTADGDM 194 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCH
Confidence 999999999888887654332211 1367888999999865
No 66
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.46 E-value=1.7e-07 Score=98.52 Aligned_cols=289 Identities=16% Similarity=0.149 Sum_probs=176.2
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceE-EEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKA-WTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIK 103 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~-w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 103 (1165)
.|.+.++|.|||||||++-++.. +...|.... ++....-.+...+.-.+...++..... -+.....+..+..+
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~~~ 87 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRIGD 87 (414)
T ss_pred hheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHHhh
Confidence 47899999999999999988873 566776555 455555566766766666667654322 23344456667778
Q ss_pred ceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCchHHHHhhcccceeeCCCCCHH-HHHHHHhhcccCCCC-CC
Q 038861 104 KKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRVVAERVGSVREYPLGELSKE-DCLRVLTQHSLGATD-FN 181 (1165)
Q Consensus 104 ~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~~~~~~~~~~~~~l~~l~~~-e~~~lf~~~~~~~~~-~~ 181 (1165)
+|.++|+||.... ...-..+...+....+.-+|+.|+|..... .+...+.+..++.. ++.++|...+..... ..
T Consensus 88 rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~ 163 (414)
T COG3903 88 RRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFW 163 (414)
T ss_pred hhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhcccee
Confidence 9999999998221 111223333444455566799999976432 35566777877766 688888776522211 11
Q ss_pred CCcchHHHHHHHHHHcCCCchHHHHHHhhhcCCCCh-------hHHHHHHhccccccCCCCCChhHHHHhccccCcHHHH
Q 038861 182 THQSLKEVREKIAMKCKGLPLAAKTLGGLLRGKHDP-------KDWEIVLNADVWDFADDGCDIIPALKVSYRFLPPQLK 254 (1165)
Q Consensus 182 ~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~-------~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k 254 (1165)
-..........|.++..|.|++|..+++..+.-... ..|...... ............+.+.+||.-|..-++
T Consensus 164 l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtgwe~ 242 (414)
T COG3903 164 LTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTGWER 242 (414)
T ss_pred ecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhhHHH
Confidence 112223677889999999999999999988765221 112221111 000011123567789999999999999
Q ss_pred hHhhhhcCCCCCCccChHHHHHHHHHcCCcccccCcccHHHHHHHHHHHHHHcCcccccc-CCCCeEEEehHHHHHHHHh
Q 038861 255 QCFAYCSLFPKDYEFEEEEIILLWTAEGFLDQECDGRKMEELGREFVRELHSRSLFHQSS-KDASRFVMHSLINDLARWA 333 (1165)
Q Consensus 255 ~~fl~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~li~~~~-~~~~~~~~H~li~~~~~~~ 333 (1165)
..|..++.|...+.-. ...|.+.|-... ...-.....+..+++.+++...+ .+...|+.-+-++.|+..+
T Consensus 243 ~~~~rLa~~~g~f~~~----l~~~~a~g~~~~-----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yalae 313 (414)
T COG3903 243 ALFGRLAVFVGGFDLG----LALAVAAGADVD-----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAE 313 (414)
T ss_pred HHhcchhhhhhhhccc----HHHHHhcCCccc-----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999997765433 233333332110 01122334466778888775422 2233444444555555433
No 67
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=1.7e-06 Score=95.52 Aligned_cols=190 Identities=14% Similarity=0.101 Sum_probs=106.0
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
||.+..++.|..++.... -...+.++|+.|+||||+|+.+++...- ..... ...+....+-..+.......+
T Consensus 21 VGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnc-e~~~~--~~pCg~C~sC~~i~~g~~~dv 92 (484)
T PRK14956 21 IHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNC-ENPIG--NEPCNECTSCLEITKGISSDV 92 (484)
T ss_pred hChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCc-ccccC--ccccCCCcHHHHHHccCCccc
Confidence 577888888888885442 1346799999999999999999864211 11100 001111111111111110000
Q ss_pred cCCC-CCCCCHHHHH---HHHHH-HhcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCc-hHHHHhh-ccc
Q 038861 81 SNVT-VNDNDLNSLQ---EKLEK-ELIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRN-RVVAERV-GSV 153 (1165)
Q Consensus 81 ~~~~-~~~~~~~~~~---~~l~~-~l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~-~~~~~~~-~~~ 153 (1165)
..-. ......++.. +.+.. ...++.-++|+|+++......+..+...+........+|++|.. ..+.... ...
T Consensus 93 iEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRC 172 (484)
T PRK14956 93 LEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRC 172 (484)
T ss_pred eeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhh
Confidence 0000 0111222221 12211 12456679999999877766777776666554455555545443 3433222 233
Q ss_pred ceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCch
Q 038861 154 REYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPL 202 (1165)
Q Consensus 154 ~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 202 (1165)
..|.+.+++.++..+++.+.+...+. .-..+....|++.++|-+-
T Consensus 173 q~~~f~~ls~~~i~~~L~~i~~~Egi----~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 173 QDFIFKKVPLSVLQDYSEKLCKIENV----QYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred heeeecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCChHH
Confidence 57999999999998888876533221 1123778889999999873
No 68
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.44 E-value=1.3e-07 Score=107.92 Aligned_cols=178 Identities=19% Similarity=0.124 Sum_probs=115.6
Q ss_pred CCccEEEEcCCCCchhhhhhcccC-ccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEe
Q 038861 962 QALKYLEVSYCSKLESLAERLDNT-SLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTI 1040 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~~~~~~~~~-~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L 1040 (1165)
+.++.|++.+|......+...... +|+.|++++|.+ ..+|..+..++.|+.|++++|++... |.....+++|+.|++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLSDL-PKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccch-hhhhhhhhccccccccccCCchhhhh-hhhhhhhhhhhheec
Confidence 457777877775544433333333 788888888777 44455677788888888888874443 333335677888888
Q ss_pred ecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCCCCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCCCCcc
Q 038861 1041 GYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPEDGFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCPVLL 1120 (1165)
Q Consensus 1041 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 1120 (1165)
++|.+.. +|........|++|.+++|+....+.....+.++..+.+.+|++... ...+..+++++.|++++|.+..+
T Consensus 194 s~N~i~~-l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~--~~~~~~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 194 SGNKISD-LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL--PESIGNLSNLETLDLSNNQISSI 270 (394)
T ss_pred cCCcccc-CchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeec--cchhccccccceecccccccccc
Confidence 8877655 44444455668888888876544444446777777777777776542 23366777788888887777666
Q ss_pred cCCCCCCcccEEEecCCCCcccHH
Q 038861 1121 SSPWFPASLTVLHISYMPNLESLS 1144 (1165)
Q Consensus 1121 ~~~~~~~~L~~L~l~~~~~l~~l~ 1144 (1165)
....-..+++.|+++++.....++
T Consensus 271 ~~~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 271 SSLGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccccccCccCEEeccCccccccch
Confidence 653334677788887765544443
No 69
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=7.3e-07 Score=101.61 Aligned_cols=191 Identities=16% Similarity=0.146 Sum_probs=108.7
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
||-+..++.|..++.+.. -...+.++|++|+||||+|+.+++.....+.+...+|.+.+.. .+.......+..+
T Consensus 17 vGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~dv~el 90 (504)
T PRK14963 17 VGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPDVLEI 90 (504)
T ss_pred cChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCceEEe
Confidence 577778888888875532 2456799999999999999999864322222222333221110 0000000000111
Q ss_pred cCCCCCCCCHHHHHHHHHHHh-----cCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCc-hHHHHhh-ccc
Q 038861 81 SNVTVNDNDLNSLQEKLEKEL-----IKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRN-RVVAERV-GSV 153 (1165)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~-~~~~~~~-~~~ 153 (1165)
... .....+... .+++.+ .+++-++|+|+++......+..+...+......+.+|+++.. ..+.... ...
T Consensus 91 ~~~--~~~~vd~iR-~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc 167 (504)
T PRK14963 91 DAA--SNNSVEDVR-DLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT 167 (504)
T ss_pred ccc--ccCCHHHHH-HHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcce
Confidence 111 112222222 222222 245668999999766655677776666655555565555543 3332222 233
Q ss_pred ceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHH
Q 038861 154 REYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAA 204 (1165)
Q Consensus 154 ~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 204 (1165)
..+++.++++++..+.+.+.+...+.. ...+.+..|++.++|.+--+
T Consensus 168 ~~~~f~~ls~~el~~~L~~i~~~egi~----i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 168 QHFRFRRLTEEEIAGKLRRLLEAEGRE----AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHH
Confidence 579999999999999998865433321 12377889999999988544
No 70
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.42 E-value=4.9e-06 Score=91.98 Aligned_cols=177 Identities=12% Similarity=0.118 Sum_probs=101.2
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEc--CCCCHHHHHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVS--EDFDVFRVTKSILM 78 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~--~~~~~~~~~~~i~~ 78 (1165)
+|+++.++.+..++... ..+.+.|+|++|+||||+|+.+++.. ....+. ..++.+. .......+ .+.+.
T Consensus 20 ~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~-~~~i~~~~~~~~~~~~~-~~~i~ 90 (319)
T PRK00440 20 VGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALAREL-YGEDWR-ENFLELNASDERGIDVI-RNKIK 90 (319)
T ss_pred cCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHH-cCCccc-cceEEeccccccchHHH-HHHHH
Confidence 58999999999998543 23357999999999999999998532 111121 1222221 11111111 11111
Q ss_pred hccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCch-HHHHh-hccccee
Q 038861 79 SISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNR-VVAER-VGSVREY 156 (1165)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~-~~~~~-~~~~~~~ 156 (1165)
.+..... .....+-++++|+++.........+...+......+++|+++... .+... ......+
T Consensus 91 ~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~ 156 (319)
T PRK00440 91 EFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVF 156 (319)
T ss_pred HHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhee
Confidence 1100000 001235689999996554444445555554444566777766432 22111 1223468
Q ss_pred eCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHH
Q 038861 157 PLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAA 204 (1165)
Q Consensus 157 ~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 204 (1165)
++.++++++....+...+...+.. -..+.+..+++.++|.+--+
T Consensus 157 ~~~~l~~~ei~~~l~~~~~~~~~~----i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 157 RFSPLKKEAVAERLRYIAENEGIE----ITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred eeCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHH
Confidence 999999999988888765433221 12367888999999987553
No 71
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.42 E-value=1.2e-07 Score=108.22 Aligned_cols=148 Identities=27% Similarity=0.319 Sum_probs=96.5
Q ss_pred CccEEEEcCCCCchhhh-hhcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEee
Q 038861 963 ALKYLEVSYCSKLESLA-ERLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIG 1041 (1165)
Q Consensus 963 ~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 1041 (1165)
+|+.|++++|.+. .+| .....++|+.|++++|++. .+|......+.|+.|++++|.+. .+|........|++|.++
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence 6888888887543 343 3333478888888888774 34444446778888888888743 344433344458888888
Q ss_pred cCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCCCC
Q 038861 1042 YCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCPV 1118 (1165)
Q Consensus 1042 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 1118 (1165)
+|.... .+..+..+.++..+.+.+|++.. ++.. +.+++++.|++++|.+...- . +..+.+|+.|++++|...
T Consensus 218 ~N~~~~-~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~--~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 218 NNSIIE-LLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSIS--S-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred CCccee-cchhhhhcccccccccCCceeee-ccchhccccccceeccccccccccc--c-ccccCccCEEeccCcccc
Confidence 875333 34456777777777777777733 2333 66777888888888876522 1 677788888888776543
No 72
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=3.8e-06 Score=95.78 Aligned_cols=181 Identities=18% Similarity=0.155 Sum_probs=106.7
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchh-------------------ccCCceEEE
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVR-------------------RHFEIKAWT 61 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~-------------------~~f~~~~w~ 61 (1165)
||.+..++.+..++.... ....+.++|+.|+||||+|+.+++...-. ..|...+++
T Consensus 19 iGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei 93 (546)
T PRK14957 19 AGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI 93 (546)
T ss_pred cCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe
Confidence 588888888888886432 23567899999999999999997521110 012222222
Q ss_pred EEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH-HhcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEE-
Q 038861 62 FVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEK-ELIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIV- 139 (1165)
Q Consensus 62 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iii- 139 (1165)
.......+. +..++.+.+.. -..+++-++|+|+++..+...+..+...+...+..+++|+
T Consensus 94 daas~~gvd------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~ 155 (546)
T PRK14957 94 DAASRTGVE------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILA 155 (546)
T ss_pred ecccccCHH------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEE
Confidence 211111111 11112222211 1235667999999977666666777776666555665554
Q ss_pred ecCchHHHHh-hcccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCc-hHHHHHH
Q 038861 140 TTRNRVVAER-VGSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLP-LAAKTLG 208 (1165)
Q Consensus 140 TtR~~~~~~~-~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~ 208 (1165)
||....+... ......+++.+++.++..+.+...+...+ . ....+....|++.++|-+ -|+..+-
T Consensus 156 Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg-i---~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 156 TTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN-I---NSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred ECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5544444422 22336899999999998877776432221 1 122367788999999965 4555443
No 73
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=4.6e-06 Score=94.58 Aligned_cols=192 Identities=14% Similarity=0.114 Sum_probs=107.6
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhcc--CCceEEEEEcCCCCHHHHHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRH--FEIKAWTFVSEDFDVFRVTKSILM 78 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~--f~~~~w~~~~~~~~~~~~~~~i~~ 78 (1165)
||-+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-... -.....-.++.. .....|..
T Consensus 19 IGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C----~sC~~I~a 89 (700)
T PRK12323 19 VGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQC----RACTEIDA 89 (700)
T ss_pred cCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCccc----HHHHHHHc
Confidence 688888899999886543 2456789999999999999988753211000 000000000000 00111100
Q ss_pred h-----ccCCCCCCCCHHHHHHHHHHH----hcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecC-chHHHH
Q 038861 79 S-----ISNVTVNDNDLNSLQEKLEKE----LIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTR-NRVVAE 148 (1165)
Q Consensus 79 ~-----l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR-~~~~~~ 148 (1165)
. +........+.+++.+.+... ..++.-++|+|+++..+...+..+...+..-..++++|++|. ...+..
T Consensus 90 G~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlp 169 (700)
T PRK12323 90 GRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV 169 (700)
T ss_pred CCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhh
Confidence 0 000000112233333333221 135567999999987766677777776665555666555554 444443
Q ss_pred hh-cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHH
Q 038861 149 RV-GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAK 205 (1165)
Q Consensus 149 ~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 205 (1165)
.. ..-..+.++.++.++..+.+.+.+..... . ...+....|++.++|.|....
T Consensus 170 TIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi-~---~d~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 170 TVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI-A---HEVNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHH
Confidence 22 22367899999999998888765432221 1 122567889999999885443
No 74
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=8.4e-06 Score=92.45 Aligned_cols=189 Identities=18% Similarity=0.184 Sum_probs=107.9
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCc-eEEEEEcCCCCHHHHHHHHHH-
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEI-KAWTFVSEDFDVFRVTKSILM- 78 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~-~~w~~~~~~~~~~~~~~~i~~- 78 (1165)
||-+..++.+...+..+. -...+.++|+.|+||||+|+.+++.......... ..+..+... .....+..
T Consensus 24 iGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i~~~ 94 (507)
T PRK06645 24 QGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISFNNH 94 (507)
T ss_pred cCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHHhcC
Confidence 577777777777775432 2356899999999999999999864221111000 000000000 00011110
Q ss_pred ------hccCCCCCCCCHHHHHHHHHHH----hcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEE-ecCchHHH
Q 038861 79 ------SISNVTVNDNDLNSLQEKLEKE----LIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIV-TTRNRVVA 147 (1165)
Q Consensus 79 ------~l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iii-TtR~~~~~ 147 (1165)
++.. ......+++...+... ..+++-++|+|+++.-....+..+...+....+.+.+|+ ||+...+.
T Consensus 95 ~h~Dv~eida--as~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~ 172 (507)
T PRK06645 95 NHPDIIEIDA--ASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIP 172 (507)
T ss_pred CCCcEEEeec--cCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhh
Confidence 0100 0112333333322221 235667899999987766677777777666556666655 54544444
Q ss_pred Hhh-cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHH
Q 038861 148 ERV-GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAA 204 (1165)
Q Consensus 148 ~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 204 (1165)
... .....+++.+++.+|..+.+...+...+.. -..+.+..|++.++|.+--+
T Consensus 173 ~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~----ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 173 ATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK----TDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHH
Confidence 333 233578999999999999998776433211 12366788999999976433
No 75
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.39 E-value=2.9e-06 Score=82.64 Aligned_cols=179 Identities=20% Similarity=0.227 Sum_probs=88.2
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
||.+.-++.+.-++..... .++...-+.+||++|+||||||.-+++. ....|. +.....-....++ ..++..
T Consensus 27 iGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg~~i~k~~dl-~~il~~- 98 (233)
T PF05496_consen 27 IGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSGPAIEKAGDL-AAILTN- 98 (233)
T ss_dssp -S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEECCC--SCHHH-HHHHHT-
T ss_pred cCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---eccchhhhhHHHH-HHHHHh-
Confidence 5777777776555432111 2234667899999999999999999853 333331 2221110011111 111111
Q ss_pred cCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCccchhhhhcccCC--------C-----------CCCcEEEEec
Q 038861 81 SNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENYNDWELLNRPFKA--------G-----------TSGSKIIVTT 141 (1165)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~--------~-----------~~~~~iiiTt 141 (1165)
++ ++.+|.+|+++.-...+-+.+.....+ . ++-+-|=.||
T Consensus 99 --------------------l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATT 157 (233)
T PF05496_consen 99 --------------------LK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATT 157 (233)
T ss_dssp -----------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEES
T ss_pred --------------------cC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeec
Confidence 12 334666677766433222222111111 1 1234455688
Q ss_pred CchHHHHhhcc-cc-eeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHhhhc
Q 038861 142 RNRVVAERVGS-VR-EYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLGGLLR 212 (1165)
Q Consensus 142 R~~~~~~~~~~-~~-~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~ 212 (1165)
|.-.+...+.. .. ..++...+.+|-.++..+.+..-. -+-.++.+.+|++++.|-|--..-+-...+
T Consensus 158 r~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~----i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 158 RAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN----IEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp SGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred cccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC----CCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 87544433322 22 347999999999999987753322 233458899999999999965554444443
No 76
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.38 E-value=1.1e-05 Score=80.55 Aligned_cols=90 Identities=18% Similarity=0.234 Sum_probs=63.1
Q ss_pred CceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCch-HHHHhh-cccceeeCCCCCHHHHHHHHhhcccCCCCC
Q 038861 103 KKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNR-VVAERV-GSVREYPLGELSKEDCLRVLTQHSLGATDF 180 (1165)
Q Consensus 103 ~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~-~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~ 180 (1165)
+.+-++|+|+++.........+...+....+.+.+|++|++. .+.... .....+++.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C---C
Confidence 456789999997765555666766666655567777766653 222222 23358999999999999988876 1 1
Q ss_pred CCCcchHHHHHHHHHHcCCCch
Q 038861 181 NTHQSLKEVREKIAMKCKGLPL 202 (1165)
Q Consensus 181 ~~~~~~~~~~~~i~~~~~g~Pl 202 (1165)
..+.+..|++.++|.|.
T Consensus 170 -----~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 -----SEEAAELLLALAGGSPG 186 (188)
T ss_pred -----CHHHHHHHHHHcCCCcc
Confidence 13678899999999885
No 77
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.38 E-value=9.6e-06 Score=91.07 Aligned_cols=182 Identities=14% Similarity=0.077 Sum_probs=105.6
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchh--ccC-----------------CceEEE
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVR--RHF-----------------EIKAWT 61 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~--~~f-----------------~~~~w~ 61 (1165)
||.++.++.+.+++..+. -...+.++|++|+||||+|+.++....-. ..+ ...+++
T Consensus 17 ig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~ 91 (355)
T TIGR02397 17 IGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEI 91 (355)
T ss_pred cCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEe
Confidence 689999999999886432 24577899999999999998887532110 001 011222
Q ss_pred EEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEec
Q 038861 62 FVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTT 141 (1165)
Q Consensus 62 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTt 141 (1165)
......+.. ..+++...+... -..+++-++|+|+++.........+...+....+.+.+|++|
T Consensus 92 ~~~~~~~~~-~~~~l~~~~~~~----------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~ 154 (355)
T TIGR02397 92 DAASNNGVD-DIREILDNVKYA----------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILAT 154 (355)
T ss_pred eccccCCHH-HHHHHHHHHhcC----------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEe
Confidence 211111111 011111111100 012445688999996554444556656665444566766666
Q ss_pred CchH-HHHhh-cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHHH
Q 038861 142 RNRV-VAERV-GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLG 208 (1165)
Q Consensus 142 R~~~-~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 208 (1165)
.+.. +.... .....++..++++++..+++...+...+.. -..+.+..+++.++|.|..+....
T Consensus 155 ~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~----i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 155 TEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK----IEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred CCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCChHHHHHHH
Confidence 5443 33222 233578889999999988888765332211 123778889999999886655443
No 78
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.37 E-value=6.1e-06 Score=94.01 Aligned_cols=192 Identities=16% Similarity=0.163 Sum_probs=106.1
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
||++..++.+..++..+. ..+.+.++|+.|+||||+|+.+++...-.. |.... ....-...+.+....
T Consensus 19 IGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~C~sCr~i~~~~ 86 (605)
T PRK05896 19 IGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNSCSVCESINTNQ 86 (605)
T ss_pred cCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcccHHHHHHHcCC
Confidence 699999999999885543 235688999999999999999875321111 11100 000001111111110
Q ss_pred cCC-----CCCCCCHHHHHHHHHHH----hcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEec-CchHHHHh-
Q 038861 81 SNV-----TVNDNDLNSLQEKLEKE----LIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTT-RNRVVAER- 149 (1165)
Q Consensus 81 ~~~-----~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTt-R~~~~~~~- 149 (1165)
... .......++....+... ..+++-++|+|+++..+...+..+...+...+..+.+|++| ....+...
T Consensus 87 h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI 166 (605)
T PRK05896 87 SVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTI 166 (605)
T ss_pred CCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHH
Confidence 000 00011222222211111 12334479999997765556666766665544556555544 43344332
Q ss_pred hcccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCch-HHHHHH
Q 038861 150 VGSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPL-AAKTLG 208 (1165)
Q Consensus 150 ~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~ 208 (1165)
......+++.++++++....+...+...+. . -..+.+..+++.++|-+- |+..+-
T Consensus 167 ~SRcq~ieF~~Ls~~eL~~~L~~il~kegi-~---Is~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 167 ISRCQRYNFKKLNNSELQELLKSIAKKEKI-K---IEDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred HhhhhhcccCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 223367899999999998888876533221 1 113678889999999654 444443
No 79
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=6.8e-06 Score=94.53 Aligned_cols=189 Identities=13% Similarity=0.118 Sum_probs=104.9
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHh-
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMS- 79 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~- 79 (1165)
||.+..++.|..++.... -...+.++|+.|+||||+|+.+++......... +..+.... ....+...
T Consensus 19 IGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---~~pCg~C~----sCr~i~~g~ 86 (709)
T PRK08691 19 VGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---GEPCGVCQ----SCTQIDAGR 86 (709)
T ss_pred cCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---CCCCcccH----HHHHHhccC
Confidence 689999999999986543 245789999999999999998875321111000 00000000 00000000
Q ss_pred ----ccCCCCCCCCHHHHHHHHHHH----hcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCch-HHHHh-
Q 038861 80 ----ISNVTVNDNDLNSLQEKLEKE----LIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNR-VVAER- 149 (1165)
Q Consensus 80 ----l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~-~~~~~- 149 (1165)
+..........+.+.+.+... ..+++-++|+|+++.........+...+......+++|++|.+. .+...
T Consensus 87 ~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TI 166 (709)
T PRK08691 87 YVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTV 166 (709)
T ss_pred ccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHH
Confidence 000000112222222222211 13556789999997655444555656555444566677666543 22222
Q ss_pred hcccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHH
Q 038861 150 VGSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAK 205 (1165)
Q Consensus 150 ~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 205 (1165)
......+++.+++.++..+.+.+.+...+. . -..+.+..|++.++|.+.-+.
T Consensus 167 rSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi-~---id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 167 LSRCLQFVLRNMTAQQVADHLAHVLDSEKI-A---YEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred HHHHhhhhcCCCCHHHHHHHHHHHHHHcCC-C---cCHHHHHHHHHHhCCCHHHHH
Confidence 122256888899999998888776533321 1 123678889999999874443
No 80
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=5.9e-06 Score=93.45 Aligned_cols=179 Identities=17% Similarity=0.187 Sum_probs=103.2
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhcc-------------------CCceEEE
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRH-------------------FEIKAWT 61 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-------------------f~~~~w~ 61 (1165)
||.+..++.+...+..+. -...+.++|++|+||||+|+.+++....... +..++.+
T Consensus 17 vGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el 91 (472)
T PRK14962 17 VGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIEL 91 (472)
T ss_pred cCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEE
Confidence 688888788877775432 2356789999999999999999753211100 0011111
Q ss_pred EEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH-----hcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcE
Q 038861 62 FVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKE-----LIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSK 136 (1165)
Q Consensus 62 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~ 136 (1165)
..... ...++.. .+.+. ..+++-++|+|+++.-.......+...+........
T Consensus 92 ~aa~~---------------------~gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv 149 (472)
T PRK14962 92 DAASN---------------------RGIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVV 149 (472)
T ss_pred eCccc---------------------CCHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEE
Confidence 11111 1122221 22222 234567999999966544445555555544334455
Q ss_pred EEEe-cCchHHHHhh-cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCC-CchHHHHHHhh
Q 038861 137 IIVT-TRNRVVAERV-GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKG-LPLAAKTLGGL 210 (1165)
Q Consensus 137 iiiT-tR~~~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~~~ 210 (1165)
+|++ +....+.... .....+++.++++++....+...+...+. .-..++...|++.++| .+.|+..+-..
T Consensus 150 ~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi----~i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 150 FVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI----EIDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred EEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4444 4333333322 23367899999999988888876533221 1123677889988765 56777776543
No 81
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.33 E-value=2.9e-06 Score=92.66 Aligned_cols=191 Identities=15% Similarity=0.085 Sum_probs=108.5
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhcc-CCceE----EEEEcCCCCHHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRH-FEIKA----WTFVSEDFDVFRVTKS 75 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~----w~~~~~~~~~~~~~~~ 75 (1165)
||.++.++.+.+.+..+. -...+.++|+.|+||+|+|..+++.. .+.. ..... -.... ....-...+.
T Consensus 22 iGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~L-lc~~~~~~~~~~~~~~~l~-~~~~c~~c~~ 94 (365)
T PRK07471 22 FGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFL-LATPPPGGDGAVPPPTSLA-IDPDHPVARR 94 (365)
T ss_pred cChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHH-hCCCCCCCCcccccccccc-CCCCChHHHH
Confidence 588888888888886543 24568899999999999998887531 1111 00000 00000 0000011111
Q ss_pred HHHhc-------cCCC-C------CCCCHHHHHHHHHHHh-----cCceEEEEEeCCCCCCccchhhhhcccCCCCCCcE
Q 038861 76 ILMSI-------SNVT-V------NDNDLNSLQEKLEKEL-----IKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSK 136 (1165)
Q Consensus 76 i~~~l-------~~~~-~------~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~ 136 (1165)
+...- .... . ..-.+++ ++.+.+.+ .+++.++|+|+++..+......+...+.....++.
T Consensus 95 i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~ 173 (365)
T PRK07471 95 IAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSL 173 (365)
T ss_pred HHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeE
Confidence 11110 0000 0 1112333 23333333 25567999999987776666667666665555666
Q ss_pred EEEecCch-HHHHhh-cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHH
Q 038861 137 IIVTTRNR-VVAERV-GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTL 207 (1165)
Q Consensus 137 iiiTtR~~-~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 207 (1165)
+|++|... .+.... .....+.+.+++.++..+.+....... .+ +....+++.++|.|.....+
T Consensus 174 ~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~-----~~---~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 174 FLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL-----PD---DPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC-----CH---HHHHHHHHHcCCCHHHHHHH
Confidence 77766655 333222 233689999999999999998763111 11 22367899999999865544
No 82
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.32 E-value=1.3e-05 Score=88.37 Aligned_cols=175 Identities=13% Similarity=0.068 Sum_probs=103.3
Q ss_pred CCchHHHHHHHHHHhcCCC----CCCCCcEEEEEEccCCchHHHHHHHHhCCcchhc------------------cCCce
Q 038861 1 YGRKKDKDEIVELLLRDDS----RADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRR------------------HFEIK 58 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~----~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~------------------~f~~~ 58 (1165)
+|-+..++.|..++..... .+..-...+.++|++|+|||++|+.++....-.. .++..
T Consensus 8 iGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~ 87 (394)
T PRK07940 8 VGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDV 87 (394)
T ss_pred cChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 5888888889998875431 0011346688999999999999998874211100 01111
Q ss_pred EEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHh-----cCceEEEEEeCCCCCCccchhhhhcccCCCCC
Q 038861 59 AWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKEL-----IKKKFLLVLDDMWNENYNDWELLNRPFKAGTS 133 (1165)
Q Consensus 59 ~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~ 133 (1165)
.++... ......+++.. +.+.. .+++-++|+|+++.........+...+....+
T Consensus 88 ~~i~~~--------------------~~~i~i~~iR~-l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~ 146 (394)
T PRK07940 88 RVVAPE--------------------GLSIGVDEVRE-LVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPP 146 (394)
T ss_pred EEeccc--------------------cccCCHHHHHH-HHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCC
Confidence 111110 01122233222 22221 24555888899977665555556666655555
Q ss_pred CcEEEEecCch-HHHHhh-cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHH
Q 038861 134 GSKIIVTTRNR-VVAERV-GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAK 205 (1165)
Q Consensus 134 ~~~iiiTtR~~-~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 205 (1165)
+..+|++|.+. .+.... .....+.+++++.++..+.+.... + .. .+.+..+++.++|.|....
T Consensus 147 ~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~-----~~---~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 147 RTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G-----VD---PETARRAARASQGHIGRAR 211 (394)
T ss_pred CCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C-----CC---HHHHHHHHHHcCCCHHHHH
Confidence 66666665554 444332 233689999999999998887432 1 11 2567889999999986443
No 83
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=8.3e-06 Score=94.53 Aligned_cols=189 Identities=15% Similarity=0.138 Sum_probs=108.1
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHh-
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMS- 79 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~- 79 (1165)
||.+..++.|...+..+. -...+.++|+.|+||||+|+.+++...-...+.. ..++.. .....+...
T Consensus 19 vGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~---~pCg~C----~~C~~i~~g~ 86 (647)
T PRK07994 19 VGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA---TPCGEC----DNCREIEQGR 86 (647)
T ss_pred cCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC---CCCCCC----HHHHHHHcCC
Confidence 688888888888886542 2345789999999999999999854211110000 000000 111111110
Q ss_pred ------ccCCCCCCCCHHHHHHHHHH----HhcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCc-hHHHH
Q 038861 80 ------ISNVTVNDNDLNSLQEKLEK----ELIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRN-RVVAE 148 (1165)
Q Consensus 80 ------l~~~~~~~~~~~~~~~~l~~----~l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~-~~~~~ 148 (1165)
+... .....++..+.+.. -..+++-++|+|+++..+......+...+.......++|++|.+ ..+..
T Consensus 87 ~~D~ieidaa--s~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~ 164 (647)
T PRK07994 87 FVDLIEIDAA--SRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (647)
T ss_pred CCCceeeccc--ccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccch
Confidence 0000 01223332222211 12456779999999877666677776666655556666665554 33332
Q ss_pred h-hcccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCch-HHHHH
Q 038861 149 R-VGSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPL-AAKTL 207 (1165)
Q Consensus 149 ~-~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 207 (1165)
. ......+.+++++.++..+++...+..... ....+....|++.++|.+- |+.++
T Consensus 165 TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i----~~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 165 TILSRCLQFHLKALDVEQIRQQLEHILQAEQI----PFEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred HHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 223368999999999999888875422211 1123667789999999775 44443
No 84
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.31 E-value=6.5e-06 Score=85.31 Aligned_cols=152 Identities=17% Similarity=0.110 Sum_probs=87.9
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCc
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKK 104 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 104 (1165)
.+.+.|+|++|+|||+||+.+++.. ...-...++++..... .. + ... ..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~--~~~~~~~~~i~~~~~~------~~----~------------------~~~-~~ 90 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADA--SYGGRNARYLDAASPL------LA----F------------------DFD-PE 90 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEEehHHhH------HH----H------------------hhc-cc
Confidence 4578999999999999999998632 1111233444432210 00 0 011 22
Q ss_pred eEEEEEeCCCCCCccchhhhhcccCCC-CCCc-EEEEecCchHHHH--------hhcccceeeCCCCCHHHHHHHHhhcc
Q 038861 105 KFLLVLDDMWNENYNDWELLNRPFKAG-TSGS-KIIVTTRNRVVAE--------RVGSVREYPLGELSKEDCLRVLTQHS 174 (1165)
Q Consensus 105 ~~LlvlDdv~~~~~~~~~~l~~~~~~~-~~~~-~iiiTtR~~~~~~--------~~~~~~~~~l~~l~~~e~~~lf~~~~ 174 (1165)
.-++|+||++..+...-..+...+... ..+. .||+|++...... .+.....++++++++++-..++.+.+
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 347889999654333323333333221 1233 4667766432111 22223688999999998777776543
Q ss_pred cCCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHhhh
Q 038861 175 LGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLGGLL 211 (1165)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 211 (1165)
...+ ..- .+++...+++...|.+..+..+...+
T Consensus 171 ~~~~-v~l---~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 171 AERG-LQL---ADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHcC-CCC---CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2211 112 23788889999999999888776665
No 85
>PTZ00202 tuzin; Provisional
Probab=98.30 E-value=2.1e-05 Score=83.96 Aligned_cols=159 Identities=12% Similarity=0.168 Sum_probs=97.5
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
+||++|++++...|...+. +.++++.|.|++|+|||||++.+..... + ..++.-.. +..+++..++.+|
T Consensus 265 VGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~vNpr--g~eElLr~LL~AL 333 (550)
T PTZ00202 265 VSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVFVDVR--GTEDTLRSVVKAL 333 (550)
T ss_pred CCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEEECCC--CHHHHHHHHHHHc
Confidence 6999999999999965332 2456999999999999999999885322 1 13322222 7899999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHh-----c-CceEEEEEeCCCCCCc-cchhhhhcccCCCCCCcEEEEecCchHHHHh---h
Q 038861 81 SNVTVNDNDLNSLQEKLEKEL-----I-KKKFLLVLDDMWNENY-NDWELLNRPFKAGTSGSKIIVTTRNRVVAER---V 150 (1165)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l-----~-~~~~LlvlDdv~~~~~-~~~~~l~~~~~~~~~~~~iiiTtR~~~~~~~---~ 150 (1165)
+.... ....++.+.|.+.+ . +++.+||+-=-...+. ..+.+. ..+.....-|+|++----+.+-.. +
T Consensus 334 GV~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evpleslt~~~~~l 410 (550)
T PTZ00202 334 GVPNV--EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLTIANTLL 410 (550)
T ss_pred CCCCc--ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcchhcccC
Confidence 96332 22234444444333 2 6677777653211111 112111 112223346778775543322111 1
Q ss_pred cccceeeCCCCCHHHHHHHHhhc
Q 038861 151 GSVREYPLGELSKEDCLRVLTQH 173 (1165)
Q Consensus 151 ~~~~~~~l~~l~~~e~~~lf~~~ 173 (1165)
..-.-|-++.++.++|.++-...
T Consensus 411 prldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 411 PRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred ccceeEecCCCCHHHHHHHHhhc
Confidence 22356889999999999887765
No 86
>PRK08727 hypothetical protein; Validated
Probab=98.30 E-value=1.3e-05 Score=82.60 Aligned_cols=148 Identities=16% Similarity=0.105 Sum_probs=87.0
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCce
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKKK 105 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 105 (1165)
..+.|+|++|+|||+|++++++. .......+.|+...+ ....+. +.+ +.+ .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~-----------------~~~-~~l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR-----------------DAL-EAL-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH-----------------HHH-HHH-hcC
Confidence 45999999999999999999853 333334556665322 111110 111 111 123
Q ss_pred EEEEEeCCCCCCc-cchh-hhhcccCC-CCCCcEEEEecCch---------HHHHhhcccceeeCCCCCHHHHHHHHhhc
Q 038861 106 FLLVLDDMWNENY-NDWE-LLNRPFKA-GTSGSKIIVTTRNR---------VVAERVGSVREYPLGELSKEDCLRVLTQH 173 (1165)
Q Consensus 106 ~LlvlDdv~~~~~-~~~~-~l~~~~~~-~~~~~~iiiTtR~~---------~~~~~~~~~~~~~l~~l~~~e~~~lf~~~ 173 (1165)
-+||+||++.... ..|. .+...+.. ...|..||+|++.. ++...+.....+++++++.++-.+++.++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 4899999964321 1232 22222211 12356799999853 12222333468899999999999999987
Q ss_pred ccCCCCCCCCcchHHHHHHHHHHcCCCchHH
Q 038861 174 SLGATDFNTHQSLKEVREKIAMKCKGLPLAA 204 (1165)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 204 (1165)
+..... . -..+....|+++++|-.-.+
T Consensus 175 a~~~~l-~---l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 175 AQRRGL-A---LDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHcCC-C---CCHHHHHHHHHhCCCCHHHH
Confidence 644321 1 22377888899888755444
No 87
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.30 E-value=7.9e-06 Score=96.28 Aligned_cols=200 Identities=21% Similarity=0.175 Sum_probs=112.3
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccC---CceEEEEEcCC---CCHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHF---EIKAWTFVSED---FDVFRVTK 74 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f---~~~~w~~~~~~---~~~~~~~~ 74 (1165)
+|++..+..+.+.+... ....+.|+|++|+||||+|+.+++.......+ ...-|+.+... .+...+..
T Consensus 157 iGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 157 VGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred eeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 58888888887777322 23569999999999999999998643322222 12335544321 12222211
Q ss_pred HH---------------HHhccCCC----------------CCCCC-HHHHHHHHHHHhcCceEEEEEeCCCCCCccchh
Q 038861 75 SI---------------LMSISNVT----------------VNDND-LNSLQEKLEKELIKKKFLLVLDDMWNENYNDWE 122 (1165)
Q Consensus 75 ~i---------------~~~l~~~~----------------~~~~~-~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~ 122 (1165)
.+ +...+... ++... ....+..+.+.++.+++.++-|+.|..+...|+
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~ 310 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPK 310 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccch
Confidence 11 11111000 00011 123456677777888888887777666656677
Q ss_pred hhhcccCCCCCCcEEEE--ecCchHH-HHhh-cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcC
Q 038861 123 LLNRPFKAGTSGSKIIV--TTRNRVV-AERV-GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCK 198 (1165)
Q Consensus 123 ~l~~~~~~~~~~~~iii--TtR~~~~-~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 198 (1165)
.+...+....+...|+| ||++... ...+ .....+.+.+++.+|.++++.+.+..... .- ..++.+.|++++.
T Consensus 311 ~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~l---s~eal~~L~~ys~ 386 (615)
T TIGR02903 311 YIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-HL---AAGVEELIARYTI 386 (615)
T ss_pred hhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHCCC
Confidence 76655555555544555 5664421 1111 12246788999999999999987543211 11 1355566666665
Q ss_pred CCchHHHHHHhh
Q 038861 199 GLPLAAKTLGGL 210 (1165)
Q Consensus 199 g~Plal~~~~~~ 210 (1165)
.-+-|+..++..
T Consensus 387 ~gRraln~L~~~ 398 (615)
T TIGR02903 387 EGRKAVNILADV 398 (615)
T ss_pred cHHHHHHHHHHH
Confidence 445666655444
No 88
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.30 E-value=1.2e-05 Score=83.01 Aligned_cols=155 Identities=15% Similarity=0.145 Sum_probs=89.8
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCce
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKKK 105 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 105 (1165)
+.+.|+|++|+|||+|++++++. .......+.++.+..... ...+.. +.+.. -
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~--------------------~~~~~~----~~~~~-~ 98 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW--------------------FVPEVL----EGMEQ-L 98 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh--------------------hhHHHH----HHhhh-C
Confidence 57899999999999999998853 222333455655432100 001111 11111 2
Q ss_pred EEEEEeCCCCCCc-cchhh-hhcccCCC-CCC-cEEEEecCch---------HHHHhhcccceeeCCCCCHHHHHHHHhh
Q 038861 106 FLLVLDDMWNENY-NDWEL-LNRPFKAG-TSG-SKIIVTTRNR---------VVAERVGSVREYPLGELSKEDCLRVLTQ 172 (1165)
Q Consensus 106 ~LlvlDdv~~~~~-~~~~~-l~~~~~~~-~~~-~~iiiTtR~~---------~~~~~~~~~~~~~l~~l~~~e~~~lf~~ 172 (1165)
-++++||++.... .+|+. +...+... ..| .++|+||+.. ++...+....+++++++++++-.+++.+
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~ 178 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQL 178 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHH
Confidence 3789999965321 23322 21222111 123 4789988754 2233334446899999999999999887
Q ss_pred cccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHhhh
Q 038861 173 HSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLGGLL 211 (1165)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 211 (1165)
++...+ ... .+++..-|++++.|-.-++..+-..+
T Consensus 179 ~a~~~~-~~l---~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 179 RARLRG-FEL---PEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHcC-CCC---CHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 654332 122 23788889999988665555444333
No 89
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=1.6e-05 Score=89.30 Aligned_cols=173 Identities=14% Similarity=0.141 Sum_probs=105.5
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcch-------------------hccCCceEEE
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRV-------------------RRHFEIKAWT 61 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~-------------------~~~f~~~~w~ 61 (1165)
||.+..++.+..++..+. -...+.++|+.|+||||+|+.++....- .+.+..++.+
T Consensus 16 iGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ei 90 (491)
T PRK14964 16 VGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEI 90 (491)
T ss_pred cCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEE
Confidence 677888888877775432 2347899999999999999988742100 0111222333
Q ss_pred EEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH----hcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEE
Q 038861 62 FVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKE----LIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKI 137 (1165)
Q Consensus 62 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~i 137 (1165)
+..... +.++....+... ..+++-++|+|+++.-+......+...+....+.+++
T Consensus 91 daas~~---------------------~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~f 149 (491)
T PRK14964 91 DAASNT---------------------SVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKF 149 (491)
T ss_pred ecccCC---------------------CHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEE
Confidence 222222 222222111111 1345668999999766655667777776665566766
Q ss_pred EEecCc-hHHHHhh-cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchH
Q 038861 138 IVTTRN-RVVAERV-GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLA 203 (1165)
Q Consensus 138 iiTtR~-~~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 203 (1165)
|++|.. ..+.... .....+++.+++.++..+.+...+...+.. -..+.+..|++.++|-+-.
T Consensus 150 Ilatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~----i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 150 ILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE----HDEESLKLIAENSSGSMRN 213 (491)
T ss_pred EEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHH
Confidence 665543 3443322 233678999999999988888765433221 1236778899999987653
No 90
>PRK09087 hypothetical protein; Validated
Probab=98.26 E-value=5.2e-06 Score=84.54 Aligned_cols=145 Identities=15% Similarity=0.111 Sum_probs=87.3
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCc
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKK 104 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 104 (1165)
.+.+.|+|++|+|||+|++.++... ...++... .+...+...+ ..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~------~~~~~~~~~~---------------------~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS-------DALLIHPN------EIGSDAANAA---------------------AE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc-------CCEEecHH------HcchHHHHhh---------------------hc-
Confidence 3568999999999999999888532 11233221 1111111111 11
Q ss_pred eEEEEEeCCCCCC--ccchhhhhcccCCCCCCcEEEEecCc---------hHHHHhhcccceeeCCCCCHHHHHHHHhhc
Q 038861 105 KFLLVLDDMWNEN--YNDWELLNRPFKAGTSGSKIIVTTRN---------RVVAERVGSVREYPLGELSKEDCLRVLTQH 173 (1165)
Q Consensus 105 ~~LlvlDdv~~~~--~~~~~~l~~~~~~~~~~~~iiiTtR~---------~~~~~~~~~~~~~~l~~l~~~e~~~lf~~~ 173 (1165)
-++++||++... ...+-.+..... ..|..||+|++. +++...+.....++++++++++-.+++.+.
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 278889995432 122222222222 236779998873 233344455578999999999999999988
Q ss_pred ccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHhhh
Q 038861 174 SLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLGGLL 211 (1165)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 211 (1165)
+..... .- .+++..-|++++.|-.-++..+-..+
T Consensus 166 ~~~~~~-~l---~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 166 FADRQL-YV---DPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHHcCC-CC---CHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 644321 12 23788889999988777666543333
No 91
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.26 E-value=4.4e-06 Score=89.95 Aligned_cols=39 Identities=31% Similarity=0.586 Sum_probs=28.9
Q ss_pred CCCcceEEEeCCCCCccccccCCccccceEeeccCcCccccc
Q 038861 871 STSLESLNIDGCDSLTYIARIQLPPSLRRLIISDCYNLRTLT 912 (1165)
Q Consensus 871 l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~ 912 (1165)
+.+++.|++++| .++.+| ..|++|+.|.+++|..+..++
T Consensus 51 ~~~l~~L~Is~c-~L~sLP--~LP~sLtsL~Lsnc~nLtsLP 89 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLP--VLPNELTEITIENCNNLTTLP 89 (426)
T ss_pred hcCCCEEEeCCC-CCcccC--CCCCCCcEEEccCCCCcccCC
Confidence 467888999988 566666 467788888888887665554
No 92
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.26 E-value=1.7e-06 Score=88.58 Aligned_cols=89 Identities=19% Similarity=0.150 Sum_probs=60.5
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCC--CCHHHHHHHHHHhccCCCCCCCCHH------HHHHH
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSED--FDVFRVTKSILMSISNVTVNDNDLN------SLQEK 96 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~ 96 (1165)
...++|.|++|+|||||++++++..... +|+..+|+.+... .++.++++.+...+-....+..... .....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999865444 8999999987766 7899999998433322222211111 11111
Q ss_pred HHHH-hcCceEEEEEeCCC
Q 038861 97 LEKE-LIKKKFLLVLDDMW 114 (1165)
Q Consensus 97 l~~~-l~~~~~LlvlDdv~ 114 (1165)
.... -.++++++++|++.
T Consensus 95 a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 95 AKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHCCCCEEEEEECHH
Confidence 2211 24789999999994
No 93
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.25 E-value=1e-05 Score=82.54 Aligned_cols=156 Identities=21% Similarity=0.246 Sum_probs=92.6
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIK 103 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 103 (1165)
+...+.+||++|+||||||+-+....+... ..||..+....-..-.+.++++-.. ...+.+
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~---------------~~~l~k 221 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN---------------EKSLTK 221 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH---------------HHhhhc
Confidence 456789999999999999999986533322 3356665544333333333332110 112457
Q ss_pred ceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEE--ecCchHHH---HhhcccceeeCCCCCHHHHHHHHhhccc---
Q 038861 104 KKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIV--TTRNRVVA---ERVGSVREYPLGELSKEDCLRVLTQHSL--- 175 (1165)
Q Consensus 104 ~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iii--TtR~~~~~---~~~~~~~~~~l~~l~~~e~~~lf~~~~~--- 175 (1165)
+|.+|.+|.|+.-...+-+ .++|....|..++| ||.++... .-+..-.++.+++|..++-..++.+...
T Consensus 222 rkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~ 298 (554)
T KOG2028|consen 222 RKTILFIDEIHRFNKSQQD---TFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLG 298 (554)
T ss_pred ceeEEEeHHhhhhhhhhhh---cccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhc
Confidence 8899999999664322222 34566667887776 77765321 1122336789999999998888876321
Q ss_pred ---CCCCCCCCc---chHHHHHHHHHHcCCCc
Q 038861 176 ---GATDFNTHQ---SLKEVREKIAMKCKGLP 201 (1165)
Q Consensus 176 ---~~~~~~~~~---~~~~~~~~i~~~~~g~P 201 (1165)
...+.-+.+ -...+.+-++..|.|-.
T Consensus 299 dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 299 DSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred cccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 111112221 12356667777788743
No 94
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=1.9e-05 Score=85.90 Aligned_cols=192 Identities=14% Similarity=0.136 Sum_probs=109.1
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhc--cCCceEEEEEcCCCCHHHHHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRR--HFEIKAWTFVSEDFDVFRVTKSILM 78 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~--~f~~~~w~~~~~~~~~~~~~~~i~~ 78 (1165)
||-++..+.+...+.++. ....+.|+|+.|+||||+|..+++..--.. .+.... ...........+.+..
T Consensus 26 ~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~~i~~ 97 (351)
T PRK09112 26 FGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWRQIAQ 97 (351)
T ss_pred cCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHHHHHc
Confidence 577888888888886543 245689999999999999998875321100 011110 0001111112333322
Q ss_pred h-------ccCCC-C------CCCCHHHHHHHHHHHh-----cCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEE
Q 038861 79 S-------ISNVT-V------NDNDLNSLQEKLEKEL-----IKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIV 139 (1165)
Q Consensus 79 ~-------l~~~~-~------~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iii 139 (1165)
. +..+. . ..-..++. +.+.+.+ .+++-++|+|+++..+......+...+.....+..+|+
T Consensus 98 ~~hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiL 176 (351)
T PRK09112 98 GAHPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFIL 176 (351)
T ss_pred CCCCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEE
Confidence 2 11110 0 11123333 2333333 34667999999987766666666665555444555444
Q ss_pred -ecCchHHHHhh-cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHH
Q 038861 140 -TTRNRVVAERV-GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTL 207 (1165)
Q Consensus 140 -TtR~~~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 207 (1165)
|++...+.... .....+++.++++++..+++...+.... -..+.+..+++.++|.|.....+
T Consensus 177 it~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~------~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 177 ISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG------SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred EECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 44443332222 2236899999999999999987431111 11356788999999999755543
No 95
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.24 E-value=2.6e-05 Score=80.07 Aligned_cols=196 Identities=16% Similarity=0.144 Sum_probs=117.3
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhcc----CCceEEEEEcCCCCHHHHHHHHHHhcc
Q 038861 6 DKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRH----FEIKAWTFVSEDFDVFRVTKSILMSIS 81 (1165)
Q Consensus 6 ~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~w~~~~~~~~~~~~~~~i~~~l~ 81 (1165)
.++.+.+++... ...+..-+.|+|.+|.|||++++++...+-.... --.++.+.....++...++..|+.+++
T Consensus 45 ~L~~L~~Ll~~P---~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 45 ALDRLEELLEYP---KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred HHHHHHHHHhCC---cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhC
Confidence 345555555443 3356677999999999999999999864322111 114667778888999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHhcC-ceEEEEEeCCCCCC------ccchhhhhcccCCCCCCcEEEEecCchHHHHh-----
Q 038861 82 NVTVNDNDLNSLQEKLEKELIK-KKFLLVLDDMWNEN------YNDWELLNRPFKAGTSGSKIIVTTRNRVVAER----- 149 (1165)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~~~~------~~~~~~l~~~~~~~~~~~~iiiTtR~~~~~~~----- 149 (1165)
.+.............+...++. +--+||+|++++.- +.+.-.....+...-.-+-|.+-|++..-+-.
T Consensus 122 aP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QL 201 (302)
T PF05621_consen 122 APYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQL 201 (302)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHH
Confidence 8876666666666555555543 34589999996631 11122222333333344566666665322111
Q ss_pred hcccceeeCCCCCHHHH-HHHHhhcc--cCCCCCCCCcchHHHHHHHHHHcCCCchHHH
Q 038861 150 VGSVREYPLGELSKEDC-LRVLTQHS--LGATDFNTHQSLKEVREKIAMKCKGLPLAAK 205 (1165)
Q Consensus 150 ~~~~~~~~l~~l~~~e~-~~lf~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 205 (1165)
......+.++....++. ..|+.... ..-.. ...-...++++.|...++|+.--+.
T Consensus 202 a~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~-~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 202 ASRFEPFELPRWELDEEFRRLLASFERALPLRK-PSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HhccCCccCCCCCCCcHHHHHHHHHHHhCCCCC-CCCCCCHHHHHHHHHHcCCchHHHH
Confidence 12335566666655443 34443321 11111 1112335889999999999875444
No 96
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=2.5e-05 Score=90.51 Aligned_cols=190 Identities=15% Similarity=0.156 Sum_probs=106.8
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccC--CceEEEEEcCCCCHHHHHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHF--EIKAWTFVSEDFDVFRVTKSILM 78 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~w~~~~~~~~~~~~~~~i~~ 78 (1165)
||-+..++.|..++.... -...+.++|+.|+||||+|+.+++...-.... .+..+-.++.. .....+..
T Consensus 19 iGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C----~~C~~i~~ 89 (618)
T PRK14951 19 VGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVC----QACRDIDS 89 (618)
T ss_pred cCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCcc----HHHHHHHc
Confidence 687888888888886543 24567899999999999999886432110000 00000000000 11111100
Q ss_pred -------hccCCCCCCCCHHHHHHHHHHH----hcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEec-CchHH
Q 038861 79 -------SISNVTVNDNDLNSLQEKLEKE----LIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTT-RNRVV 146 (1165)
Q Consensus 79 -------~l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTt-R~~~~ 146 (1165)
.+.. ......++..+.+... ..++.-++|+|+|+..+...+..+...+......+++|++| ....+
T Consensus 90 g~h~D~~elda--as~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ki 167 (618)
T PRK14951 90 GRFVDYTELDA--ASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKV 167 (618)
T ss_pred CCCCceeecCc--ccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhh
Confidence 0000 0112233332222211 12445689999998877667777777766655566666555 43343
Q ss_pred HHh-hcccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHH
Q 038861 147 AER-VGSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAK 205 (1165)
Q Consensus 147 ~~~-~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 205 (1165)
... ......++++++++++..+.+...+...+. . ...+.+..|++.++|-+--+.
T Consensus 168 l~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi-~---ie~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 168 PVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV-P---AEPQALRLLARAARGSMRDAL 223 (618)
T ss_pred hHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHH
Confidence 322 223368999999999998888876533221 1 123677889999998764433
No 97
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=1.5e-05 Score=89.53 Aligned_cols=195 Identities=13% Similarity=0.128 Sum_probs=106.7
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEE-cCCCCHHHHHHHHHHh
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFV-SEDFDVFRVTKSILMS 79 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~-~~~~~~~~~~~~i~~~ 79 (1165)
||.+..++.|..++.++. -...+.++|+.|+||||+|+.+++...-...+....|... ......-.....+...
T Consensus 19 iGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~ 93 (397)
T PRK14955 19 TAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAG 93 (397)
T ss_pred cChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcC
Confidence 588888888888886432 2345789999999999999998753211111111111100 0000000111111110
Q ss_pred ccCC-----CCCCCCHHHHHHHHHHHh-----cCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEec-CchHHHH
Q 038861 80 ISNV-----TVNDNDLNSLQEKLEKEL-----IKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTT-RNRVVAE 148 (1165)
Q Consensus 80 l~~~-----~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTt-R~~~~~~ 148 (1165)
.... .......+++.+ +.+.+ .+++-++|+|+++......+..+...+....+.+.+|++| +...+..
T Consensus 94 ~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~ 172 (397)
T PRK14955 94 TSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (397)
T ss_pred CCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHH
Confidence 0000 001112333332 22222 3456688999997766556777777766655666666555 4444433
Q ss_pred hh-cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHH
Q 038861 149 RV-GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAK 205 (1165)
Q Consensus 149 ~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 205 (1165)
.. .....+++.++++++..+.+...+...+. .-..+.+..|++.++|.+--+.
T Consensus 173 tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~----~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 173 TIASRCQRFNFKRIPLEEIQQQLQGICEAEGI----SVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 22 12257889999999988888776432211 1123778899999999775333
No 98
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=1.8e-05 Score=90.75 Aligned_cols=174 Identities=14% Similarity=0.116 Sum_probs=103.7
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhc-------------------cCCceEEE
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRR-------------------HFEIKAWT 61 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~-------------------~f~~~~w~ 61 (1165)
||-+..++.|..++.... -...+.++|+.|+||||+|+.+++...-.. .+..++.+
T Consensus 19 vGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ei 93 (509)
T PRK14958 19 IGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEV 93 (509)
T ss_pred cCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEE
Confidence 688888899999986543 234678999999999999998875321111 11112222
Q ss_pred EEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH----hcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEE
Q 038861 62 FVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKE----LIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKI 137 (1165)
Q Consensus 62 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~i 137 (1165)
+... ....++..+.+... ..++.-++|+|+|+..+......+...+....+.+++
T Consensus 94 daas---------------------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~f 152 (509)
T PRK14958 94 DAAS---------------------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKF 152 (509)
T ss_pred cccc---------------------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEE
Confidence 2111 12222222222111 1345568999999776666677776666665566766
Q ss_pred EEecCc-hHHHHhh-cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHH
Q 038861 138 IVTTRN-RVVAERV-GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAA 204 (1165)
Q Consensus 138 iiTtR~-~~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 204 (1165)
|++|.+ ..+.... .....++++++++++..+.+...+...+. . -..+....|++.++|-+.-+
T Consensus 153 Ilattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi-~---~~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 153 ILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV-E---FENAALDLLARAANGSVRDA 217 (509)
T ss_pred EEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCcHHHH
Confidence 665544 3333222 22356889999999887766655432221 1 12256778999999977443
No 99
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.21 E-value=3.8e-06 Score=90.44 Aligned_cols=43 Identities=35% Similarity=0.675 Sum_probs=27.3
Q ss_pred hcCCCCcceEEEcCCCCccccCCCCCcccccEEEeccCCCCCCChH
Q 038861 788 LLTLSSLRELRISGCASLVSFPQAALPSQLRTFKIEHCNALESLPE 833 (1165)
Q Consensus 788 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 833 (1165)
+..+.++++|++++| .+..+| .++++|++|.+++|..+..+|.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP--~LP~sLtsL~Lsnc~nLtsLP~ 90 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLP--VLPNELTEITIENCNNLTTLPG 90 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccC--CCCCCCcEEEccCCCCcccCCc
Confidence 334566777777777 455555 3566777777777766655553
No 100
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.20 E-value=2.7e-05 Score=90.56 Aligned_cols=193 Identities=13% Similarity=0.136 Sum_probs=109.3
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCC--ceEEEEEcCCCCHHHHHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFE--IKAWTFVSEDFDVFRVTKSILM 78 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~--~~~w~~~~~~~~~~~~~~~i~~ 78 (1165)
||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++......... ...+..+... .....+..
T Consensus 27 iGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c----~~C~~i~~ 97 (598)
T PRK09111 27 IGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG----EHCQAIME 97 (598)
T ss_pred cCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc----HHHHHHhc
Confidence 689999999999886543 244688999999999999999986422111110 0000000100 11111211
Q ss_pred hccCC-----CCCCCCHHHHHHHHHHH----hcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEec-CchHHHH
Q 038861 79 SISNV-----TVNDNDLNSLQEKLEKE----LIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTT-RNRVVAE 148 (1165)
Q Consensus 79 ~l~~~-----~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTt-R~~~~~~ 148 (1165)
.-... .......+++.+.+... ..+++-++|+|+++.........+...+....+.+.+|++| ....+..
T Consensus 98 g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~ 177 (598)
T PRK09111 98 GRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPV 177 (598)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhH
Confidence 11000 00112233332222111 12445578999997766556667766666555666666554 4434333
Q ss_pred hh-cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHH
Q 038861 149 RV-GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKT 206 (1165)
Q Consensus 149 ~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 206 (1165)
.+ .....+++..+++++....+.+.+..... .-..+.+..|++.++|-+.-+..
T Consensus 178 tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi----~i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 178 TVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV----EVEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 22 23357899999999998888876533221 11226788899999998755543
No 101
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.20 E-value=3.6e-05 Score=89.84 Aligned_cols=188 Identities=14% Similarity=0.137 Sum_probs=104.7
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHH-h
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILM-S 79 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~-~ 79 (1165)
||.+..++.+..++..+. -...+.++|+.|+||||+|+.++...- +.+.. ..+-.+.. ...... .
T Consensus 21 iGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~Ln-C~~~~-~~~~pC~~-------C~~~~~~~ 86 (725)
T PRK07133 21 VGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALN-CSHKT-DLLEPCQE-------CIENVNNS 86 (725)
T ss_pred cCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhc-ccccC-CCCCchhH-------HHHhhcCC
Confidence 688888889999886543 245678999999999999999875311 11100 00000000 000000 0
Q ss_pred ---ccCCCCCCCCHHHHHHHHHHHh-----cCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEE-ecCchHHHHh-
Q 038861 80 ---ISNVTVNDNDLNSLQEKLEKEL-----IKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIV-TTRNRVVAER- 149 (1165)
Q Consensus 80 ---l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iii-TtR~~~~~~~- 149 (1165)
+..........+++ +.+.+.+ .+++-++|+|+++......+..+...+...+..+.+|+ |++...+...
T Consensus 87 ~Dvieidaasn~~vd~I-ReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI 165 (725)
T PRK07133 87 LDIIEMDAASNNGVDEI-RELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTI 165 (725)
T ss_pred CcEEEEeccccCCHHHH-HHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHH
Confidence 00000001122222 2222222 35666999999977665666677666655445555554 5444444433
Q ss_pred hcccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCch-HHHHH
Q 038861 150 VGSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPL-AAKTL 207 (1165)
Q Consensus 150 ~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 207 (1165)
......+++.+++.++..+.+...+...+. ....+.++.|++.++|-+- |+..+
T Consensus 166 ~SRcq~ieF~~L~~eeI~~~L~~il~kegI----~id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 166 LSRVQRFNFRRISEDEIVSRLEFILEKENI----SYEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred HhhceeEEccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 223368999999999998888765432221 1112667889999998664 44443
No 102
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.19 E-value=9.6e-08 Score=99.14 Aligned_cols=296 Identities=17% Similarity=0.245 Sum_probs=139.6
Q ss_pred CcCceEecCCCCccccc--hhhcCCCCcceEEEcCCCCccccC---CCCCcccccEEEeccCCCCCCChHHHhhcCcccc
Q 038861 769 TEDDLELSNCKGLTKLP--QALLTLSSLRELRISGCASLVSFP---QAALPSQLRTFKIEHCNALESLPEAWMRNSNSSL 843 (1165)
Q Consensus 769 ~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~l~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 843 (1165)
.|+.|++++|...+.-+ .....+|++++|.+.+|..++.-. -..+++.|+++++..|..++...-..
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~-------- 210 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKY-------- 210 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHH--------
Confidence 35677777776554333 244567888888888886443221 11245677777777766444332211
Q ss_pred ccccccceeecccccccCCchhhhcCCCCCcceEEEeCCCCCccc---cccCCccccceEeeccCcCcccccCCcCcccc
Q 038861 844 QSLEIGTIEIEECNALESLPEAWMQDSSTSLESLNIDGCDSLTYI---ARIQLPPSLRRLIISDCYNLRTLTGDQGICSS 920 (1165)
Q Consensus 844 ~~l~l~~~~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 920 (1165)
..+.+++|++|+++.|+.+..- +.......++.+...+|..+..-.
T Consensus 211 -----------------------la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~-------- 259 (483)
T KOG4341|consen 211 -----------------------LAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEA-------- 259 (483)
T ss_pred -----------------------HHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHH--------
Confidence 1233566666666666644431 122333445555555554321100
Q ss_pred CCCCccccccCCCCcccccccceeeccccccccccc--CCCCCCCccEEEEcCCCCchhhhhh--ccc-Cccceeeeecc
Q 038861 921 RSGRTSLTSFSSENELPATLEQLEVRFCSNLAFLSR--NGNLPQALKYLEVSYCSKLESLAER--LDN-TSLEVIAISYL 995 (1165)
Q Consensus 921 ~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~l~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~--~~~-~~L~~L~L~~n 995 (1165)
.........-+.++++..|..++.... ....-..|+.|+.++|...++.+-. ... .+|++|-++.|
T Consensus 260 ---------l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c 330 (483)
T KOG4341|consen 260 ---------LLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGC 330 (483)
T ss_pred ---------HHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEecccc
Confidence 000000001122222223322221110 0111134566666666554443321 112 66666666666
Q ss_pred cccccCC-cc-cCCCCCCCEEEEeCCCCCc--cccCCCCCCCCcCeEEeecCCCCCcC-----CcccCCCCCCceeeecc
Q 038861 996 ENLKSLP-AG-LHNLHHLQELKVYGCPNLE--SFPEGGLPSTKLTKLTIGYCENLKAL-----PNCMHNLTSLLHLEIGW 1066 (1165)
Q Consensus 996 ~~~~~~p-~~-~~~l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~L~~n~~~~~~-----~~~~~~l~~L~~L~l~~ 1066 (1165)
+..+..- .. =.+.+.|+.+++.+|.... .+-..-.+++.|+.|.+++|...+.. ...-.++..|+.+.+++
T Consensus 331 ~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n 410 (483)
T KOG4341|consen 331 QQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDN 410 (483)
T ss_pred chhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecC
Confidence 5433221 11 1245667777777665321 12223345567777777777654432 22224455677777777
Q ss_pred CCCCcccCCC--CCCCCcceEEEecCCCCCcc-cccccccCCCCcEEEE
Q 038861 1067 CRSLVSFPED--GFPTNLESLEVHDLKISKPL-FEWGLNKFSSLRELQI 1112 (1165)
Q Consensus 1067 n~~~~~~p~~--~~~~~L~~L~l~~n~~~~~~-~~~~~~~l~~L~~L~l 1112 (1165)
|+.+..-... ...++|+.+++-+++....- ....-.++|++++..+
T Consensus 411 ~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 411 CPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred CCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 7664322111 44566777777766643211 1111234565555544
No 103
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=2.9e-05 Score=89.75 Aligned_cols=177 Identities=14% Similarity=0.147 Sum_probs=103.8
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhc-------------------cCCceEEE
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRR-------------------HFEIKAWT 61 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~-------------------~f~~~~w~ 61 (1165)
||-+..++.+..++.... -...+.++|+.|+||||+|+.++....... .|...+++
T Consensus 19 vGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei 93 (527)
T PRK14969 19 VGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEV 93 (527)
T ss_pred cCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEe
Confidence 578888888888886543 235678999999999999999875321110 11111222
Q ss_pred EEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH----hcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEE
Q 038861 62 FVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKE----LIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKI 137 (1165)
Q Consensus 62 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~i 137 (1165)
.... ....+++...+... ..+++-++|+|+++..+......+...+......+.+
T Consensus 94 ~~~~---------------------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~f 152 (527)
T PRK14969 94 DAAS---------------------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (527)
T ss_pred eccc---------------------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEE
Confidence 1111 11222222222111 1356679999999766555566666666655556666
Q ss_pred EEecCc-hHHHHh-hcccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCch-HHHHH
Q 038861 138 IVTTRN-RVVAER-VGSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPL-AAKTL 207 (1165)
Q Consensus 138 iiTtR~-~~~~~~-~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 207 (1165)
|++|.+ ..+... ......+++++++.++..+.+.+.+...+. . ...+.+..|++.++|.+- |+..+
T Consensus 153 IL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi-~---~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 153 ILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI-P---FDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 665543 333221 112257899999999998887765432221 1 123667889999999774 44444
No 104
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.16 E-value=1.9e-05 Score=87.98 Aligned_cols=176 Identities=18% Similarity=0.112 Sum_probs=95.6
Q ss_pred CCchHHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDS-------RADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVT 73 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~ 73 (1165)
.|++++++++.+.+...-. .+-..++-+.++|++|+|||++|+++++. ....| +.+.. ..+.
T Consensus 125 ~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~----~~l~ 193 (364)
T TIGR01242 125 GGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG----SELV 193 (364)
T ss_pred CChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch----HHHH
Confidence 4889999999887742110 01123456899999999999999999863 22222 22211 1111
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCC-----------cc---chhhhhcccCC--CCCCcEE
Q 038861 74 KSILMSISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNEN-----------YN---DWELLNRPFKA--GTSGSKI 137 (1165)
Q Consensus 74 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-----------~~---~~~~l~~~~~~--~~~~~~i 137 (1165)
.... + .........+...-...+.+|++|+++... .. .+..+...+.. ...+.+|
T Consensus 194 ~~~~---g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~v 264 (364)
T TIGR01242 194 RKYI---G------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKV 264 (364)
T ss_pred HHhh---h------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEE
Confidence 1110 0 011111112222223467899999985421 00 11122222211 1246778
Q ss_pred EEecCchHHHH-hh----cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCc
Q 038861 138 IVTTRNRVVAE-RV----GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLP 201 (1165)
Q Consensus 138 iiTtR~~~~~~-~~----~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 201 (1165)
|.||...+... .+ .-...++++..+.++..++|..++.+.... .. .....+++.+.|..
T Consensus 265 I~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~----~~~~~la~~t~g~s 328 (364)
T TIGR01242 265 IAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-ED----VDLEAIAKMTEGAS 328 (364)
T ss_pred EEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-cc----CCHHHHHHHcCCCC
Confidence 88887543221 11 123578999999999999999876443211 11 12456777887754
No 105
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.15 E-value=2.2e-05 Score=93.35 Aligned_cols=168 Identities=22% Similarity=0.265 Sum_probs=92.5
Q ss_pred CCchHHHH---HHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCC-CCHHHHHHHH
Q 038861 1 YGRKKDKD---EIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSED-FDVFRVTKSI 76 (1165)
Q Consensus 1 vGR~~~~~---~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~-~~~~~~~~~i 76 (1165)
||++..+. .+.+.+... ....+.++|++|+||||+|+.+++. ....| +.+... ....
T Consensus 31 vGQe~ii~~~~~L~~~i~~~------~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f-----~~lna~~~~i~------ 91 (725)
T PRK13341 31 VGQDHILGEGRLLRRAIKAD------RVGSLILYGPPGVGKTTLARIIANH--TRAHF-----SSLNAVLAGVK------ 91 (725)
T ss_pred cCcHHHhhhhHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHH--hcCcc-----eeehhhhhhhH------
Confidence 57777664 455555332 3456789999999999999999853 33333 111110 0000
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHHh--cCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEE--ecCchH--HHHhh
Q 038861 77 LMSISNVTVNDNDLNSLQEKLEKEL--IKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIV--TTRNRV--VAERV 150 (1165)
Q Consensus 77 ~~~l~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iii--TtR~~~--~~~~~ 150 (1165)
+..+......+.+ .+++.++|+||++.-.....+.+...+. .|..++| ||.+.. +....
T Consensus 92 ------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL 156 (725)
T PRK13341 92 ------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKAL 156 (725)
T ss_pred ------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHh
Confidence 1111112222222 2467799999997655455555544332 3555555 344431 22211
Q ss_pred -cccceeeCCCCCHHHHHHHHhhcccCCCC---CCCCcchHHHHHHHHHHcCCCch
Q 038861 151 -GSVREYPLGELSKEDCLRVLTQHSLGATD---FNTHQSLKEVREKIAMKCKGLPL 202 (1165)
Q Consensus 151 -~~~~~~~l~~l~~~e~~~lf~~~~~~~~~---~~~~~~~~~~~~~i~~~~~g~Pl 202 (1165)
.....+++++++.++...++.+.+..... ...-.-..+....|++.+.|..-
T Consensus 157 ~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 157 VSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 22357899999999999988876431000 00111224677888888888643
No 106
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.15 E-value=2.7e-05 Score=79.13 Aligned_cols=166 Identities=17% Similarity=0.139 Sum_probs=93.6
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCc
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKK 104 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 104 (1165)
...+.|+|+.|+|||.|.+++++.......-..+++++ ..++...+...+.. .. ...+++.++.-
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~-----~~----~~~~~~~~~~~ 98 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRD-----GE----IEEFKDRLRSA 98 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHT-----TS----HHHHHHHHCTS
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHc-----cc----chhhhhhhhcC
Confidence 44589999999999999999996422221222344554 34455555554432 11 22344444433
Q ss_pred eEEEEEeCCCCCCcc-chh-hhhcccCC-CCCCcEEEEecCch---------HHHHhhcccceeeCCCCCHHHHHHHHhh
Q 038861 105 KFLLVLDDMWNENYN-DWE-LLNRPFKA-GTSGSKIIVTTRNR---------VVAERVGSVREYPLGELSKEDCLRVLTQ 172 (1165)
Q Consensus 105 ~~LlvlDdv~~~~~~-~~~-~l~~~~~~-~~~~~~iiiTtR~~---------~~~~~~~~~~~~~l~~l~~~e~~~lf~~ 172 (1165)
-+|++||++..... .|. .+...+.. ...|.+||+|++.. ++...+...-.++++++++++..+++.+
T Consensus 99 -DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 99 -DLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp -SEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHH
T ss_pred -CEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHH
Confidence 48899999553322 122 22221111 12467899999643 2233344446899999999999999998
Q ss_pred cccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHhh
Q 038861 173 HSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLGGL 210 (1165)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~ 210 (1165)
.+...... -.++++.-|++++.+..-.+..+-..
T Consensus 178 ~a~~~~~~----l~~~v~~~l~~~~~~~~r~L~~~l~~ 211 (219)
T PF00308_consen 178 KAKERGIE----LPEEVIEYLARRFRRDVRELEGALNR 211 (219)
T ss_dssp HHHHTT------S-HHHHHHHHHHTTSSHHHHHHHHHH
T ss_pred HHHHhCCC----CcHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 87544322 22377888888888766665554433
No 107
>PF14516 AAA_35: AAA-like domain
Probab=98.14 E-value=0.00025 Score=77.33 Aligned_cols=197 Identities=16% Similarity=0.131 Sum_probs=112.9
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCC-----CCHHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSED-----FDVFRVTKS 75 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~-----~~~~~~~~~ 75 (1165)
|+|...-+++.+.+.... ..+.|.|+-.+|||+|...+.+. .+..-..++++++... .+....++.
T Consensus 14 i~R~~~e~~~~~~i~~~G-------~~~~I~apRq~GKTSll~~l~~~--l~~~~~~~v~id~~~~~~~~~~~~~~f~~~ 84 (331)
T PF14516_consen 14 IERPPAEQECYQEIVQPG-------SYIRIKAPRQMGKTSLLLRLLER--LQQQGYRCVYIDLQQLGSAIFSDLEQFLRW 84 (331)
T ss_pred cCchHHHHHHHHHHhcCC-------CEEEEECcccCCHHHHHHHHHHH--HHHCCCEEEEEEeecCCCcccCCHHHHHHH
Confidence 567766667777775432 37999999999999999888753 3222234556666542 234444444
Q ss_pred H----HHhccCCCC-------CCCCHHHHHHHHHHHh---cCceEEEEEeCCCCCCc-----cc-hhhhhcccCCC----
Q 038861 76 I----LMSISNVTV-------NDNDLNSLQEKLEKEL---IKKKFLLVLDDMWNENY-----ND-WELLNRPFKAG---- 131 (1165)
Q Consensus 76 i----~~~l~~~~~-------~~~~~~~~~~~l~~~l---~~~~~LlvlDdv~~~~~-----~~-~~~l~~~~~~~---- 131 (1165)
+ .+++..... ...........+.+.+ .+++.+|++|+++..-. .+ +..+.......
T Consensus 85 ~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~ 164 (331)
T PF14516_consen 85 FCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNP 164 (331)
T ss_pred HHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCc
Confidence 4 444443221 0111222233344432 26899999999964321 11 12222111111
Q ss_pred -CCCcEEEEe-cCchHHHHh-----hcccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHH
Q 038861 132 -TSGSKIIVT-TRNRVVAER-----VGSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAA 204 (1165)
Q Consensus 132 -~~~~~iiiT-tR~~~~~~~-----~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 204 (1165)
...-+.++. +........ ++....+++++++.+|...|...+...- . .+..++|...+||+|.-+
T Consensus 165 ~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~-----~---~~~~~~l~~~tgGhP~Lv 236 (331)
T PF14516_consen 165 IWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF-----S---QEQLEQLMDWTGGHPYLV 236 (331)
T ss_pred ccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC-----C---HHHHHHHHHHHCCCHHHH
Confidence 111222222 211111111 1223578999999999999988763221 1 134889999999999999
Q ss_pred HHHHhhhcCC
Q 038861 205 KTLGGLLRGK 214 (1165)
Q Consensus 205 ~~~~~~l~~~ 214 (1165)
..++..+...
T Consensus 237 ~~~~~~l~~~ 246 (331)
T PF14516_consen 237 QKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHc
Confidence 9999999764
No 108
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.14 E-value=5.4e-06 Score=88.14 Aligned_cols=88 Identities=19% Similarity=0.205 Sum_probs=59.5
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCC--CHHHHHHHHHHhccCCCCCCCCHHHHH--H---HHH
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDF--DVFRVTKSILMSISNVTVNDNDLNSLQ--E---KLE 98 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~--~---~l~ 98 (1165)
...+|+|++|+||||||++++++.... +|+..+|+.+.+.. .+.++++++...+-....+........ . ...
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 457999999999999999999764444 89999999998877 777888887643322222222211111 0 111
Q ss_pred HH--hcCceEEEEEeCCC
Q 038861 99 KE--LIKKKFLLVLDDMW 114 (1165)
Q Consensus 99 ~~--l~~~~~LlvlDdv~ 114 (1165)
++ -.+++++|++|++.
T Consensus 249 e~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 249 KRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHcCCCEEEEEEChH
Confidence 11 25789999999993
No 109
>PRK05642 DNA replication initiation factor; Validated
Probab=98.13 E-value=2.7e-05 Score=80.24 Aligned_cols=156 Identities=24% Similarity=0.234 Sum_probs=91.4
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCc
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKK 104 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 104 (1165)
...+.|+|.+|+|||.|++++++. ....-..++|++..+ +... . ..+.+.+++-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~--------------~----~~~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR--------------G----PELLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh--------------h----HHHHHhhhhC
Confidence 356899999999999999999853 222234556665421 1111 0 1122223322
Q ss_pred eEEEEEeCCCCCC-ccchhh-hhcccCC-CCCCcEEEEecCchH---------HHHhhcccceeeCCCCCHHHHHHHHhh
Q 038861 105 KFLLVLDDMWNEN-YNDWEL-LNRPFKA-GTSGSKIIVTTRNRV---------VAERVGSVREYPLGELSKEDCLRVLTQ 172 (1165)
Q Consensus 105 ~~LlvlDdv~~~~-~~~~~~-l~~~~~~-~~~~~~iiiTtR~~~---------~~~~~~~~~~~~l~~l~~~e~~~lf~~ 172 (1165)
. ++|+||++-.. ..+|.. +...+.. ...|.+||+|++... +...+.....++++++++++-.+++..
T Consensus 99 d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 E-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred C-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 2 67899995332 123322 3332221 124667888887532 112222335789999999999999986
Q ss_pred cccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHhhh
Q 038861 173 HSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLGGLL 211 (1165)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 211 (1165)
++..... .-+ +++..-|++++.|-.-.+..+-..|
T Consensus 178 ka~~~~~-~l~---~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 178 RASRRGL-HLT---DEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHcCC-CCC---HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6543321 122 3788889999988766655544444
No 110
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.12 E-value=3.7e-07 Score=92.78 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=21.4
Q ss_pred cccCCcCceEecCCCCcc----ccchhhcCCCCcceEEEcC
Q 038861 765 LSLVTEDDLELSNCKGLT----KLPQALLTLSSLRELRISG 801 (1165)
Q Consensus 765 ~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~ 801 (1165)
..+..++.+++++|.+-. .+...+.+.+.|+.-++++
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd 67 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD 67 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh
Confidence 344556677777776543 2334555566666666655
No 111
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=5.4e-05 Score=86.97 Aligned_cols=194 Identities=13% Similarity=0.131 Sum_probs=107.5
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
||-+..++.|..++.+.. -...+.++|+.|+||||+|+.+++...-....... .+... ...+.+....
T Consensus 19 iGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~---pCg~C----~sC~~i~~g~ 86 (624)
T PRK14959 19 AGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGE---PCNTC----EQCRKVTQGM 86 (624)
T ss_pred cCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCC---CCccc----HHHHHHhcCC
Confidence 577777777777775432 13567889999999999999988643211100000 00000 0111111110
Q ss_pred cCC-----CCCCCCHHHHHHHHHHH-----hcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCc-hHHHHh
Q 038861 81 SNV-----TVNDNDLNSLQEKLEKE-----LIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRN-RVVAER 149 (1165)
Q Consensus 81 ~~~-----~~~~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~-~~~~~~ 149 (1165)
... .......++.. .+.+. ..+++-++|+|+++.........+...+........+|++|.. ..+...
T Consensus 87 hpDv~eId~a~~~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~T 165 (624)
T PRK14959 87 HVDVVEIDGASNRGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVT 165 (624)
T ss_pred CCceEEEecccccCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHH
Confidence 000 00011122221 12222 2355679999999776655666676666544445556665544 343322
Q ss_pred h-cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCc-hHHHHHHhhh
Q 038861 150 V-GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLP-LAAKTLGGLL 211 (1165)
Q Consensus 150 ~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~~~l 211 (1165)
+ .....++++++++++..+.+...+..... .-..+.+..|++.++|-+ .|+..+...+
T Consensus 166 I~SRcq~i~F~pLs~~eL~~~L~~il~~egi----~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 166 IVSRCQHFTFTRLSEAGLEAHLTKVLGREGV----DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHhhhhccccCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2 22357899999999999888875433221 112367888999999854 6777766544
No 112
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=7.1e-05 Score=83.94 Aligned_cols=175 Identities=13% Similarity=0.184 Sum_probs=100.1
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchh------ccCCceEEEEEcCCCCHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVR------RHFEIKAWTFVSEDFDVFRVTK 74 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~------~~f~~~~w~~~~~~~~~~~~~~ 74 (1165)
||.+..++.+..++..+. -.+.+.++|++|+||||+|+.+++..... ..|...+ +.....
T Consensus 20 ig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~-~~l~~~-------- 85 (367)
T PRK14970 20 VGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI-FELDAA-------- 85 (367)
T ss_pred CCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce-EEeccc--------
Confidence 688899999999886532 24578899999999999999987532110 1111111 111100
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHH----hcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEec-CchHHHHh
Q 038861 75 SILMSISNVTVNDNDLNSLQEKLEKE----LIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTT-RNRVVAER 149 (1165)
Q Consensus 75 ~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTt-R~~~~~~~ 149 (1165)
...+.++....+.+. ..+++-++|+|+++......+..+...+......+.+|+++ +...+...
T Consensus 86 -----------~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 86 -----------SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred -----------cCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 011122222222111 12345689999996554444556655454434455555555 33222222
Q ss_pred -hcccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHH
Q 038861 150 -VGSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAA 204 (1165)
Q Consensus 150 -~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 204 (1165)
......++..++++++....+...+...+.. -..+.+..+++.++|-+-.+
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~----i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK----FEDDALHIIAQKADGALRDA 206 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHhCCCCHHHH
Confidence 1233578999999999888888765433221 12377888999999865533
No 113
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=1.7e-06 Score=85.56 Aligned_cols=194 Identities=18% Similarity=0.061 Sum_probs=128.4
Q ss_pred CccEEEEcCCCCchh--hhhhccc-Cccceeeeeccccccc--CCcccCCCCCCCEEEEeCCCCCccccCCC-CCCCCcC
Q 038861 963 ALKYLEVSYCSKLES--LAERLDN-TSLEVIAISYLENLKS--LPAGLHNLHHLQELKVYGCPNLESFPEGG-LPSTKLT 1036 (1165)
Q Consensus 963 ~L~~L~l~~~~~~~~--~~~~~~~-~~L~~L~L~~n~~~~~--~p~~~~~l~~L~~L~L~~n~~~~~~~~~~-~~l~~L~ 1036 (1165)
.+.-|.+.+|.+-.. +-..... +.++.+||.+|.+..- +..-+.++|.|++|+|+.|++...+ ... .+..+|+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~ 124 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLR 124 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceE
Confidence 355566666644322 1111111 7899999999988642 4455788999999999999865543 223 4678999
Q ss_pred eEEeecCCCCC-cCCcccCCCCCCceeeeccCCCCcccCC------C------------------------CCCCCcceE
Q 038861 1037 KLTIGYCENLK-ALPNCMHNLTSLLHLEIGWCRSLVSFPE------D------------------------GFPTNLESL 1085 (1165)
Q Consensus 1037 ~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~p~------~------------------------~~~~~L~~L 1085 (1165)
.|.|.+..+.- .....+..+|.++.|++|.|......-+ + ..++++..+
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 99998866532 2234567888889998888844211000 0 136888888
Q ss_pred EEecCCCCCcccccccccCCCCcEEEEecCCCCcccCC---CCCCcccEEEecCCCCcccHH------HhhhcCCccceE
Q 038861 1086 EVHDLKISKPLFEWGLNKFSSLRELQITGGCPVLLSSP---WFPASLTVLHISYMPNLESLS------LIVENLTSLEIL 1156 (1165)
Q Consensus 1086 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~~~~l~~l~------~~~~~l~~L~~L 1156 (1165)
.+..|++...-...++..+|.+..|+|+.|.+...... .-+++|.-|.++++|....+. ..++++++++.|
T Consensus 205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vL 284 (418)
T KOG2982|consen 205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVL 284 (418)
T ss_pred eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEe
Confidence 99999887766677788888888999987665543322 135678888888888766553 224566666666
Q ss_pred e
Q 038861 1157 I 1157 (1165)
Q Consensus 1157 ~ 1157 (1165)
+
T Consensus 285 N 285 (418)
T KOG2982|consen 285 N 285 (418)
T ss_pred c
Confidence 5
No 114
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=0.00011 Score=83.75 Aligned_cols=176 Identities=13% Similarity=0.121 Sum_probs=101.9
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchh-c------------------cCCceEEE
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVR-R------------------HFEIKAWT 61 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~-~------------------~f~~~~w~ 61 (1165)
||-+..++.+..++.... -.....++|+.|+||||+|+.++....-. . .+...+++
T Consensus 19 iGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ei 93 (486)
T PRK14953 19 IGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI 93 (486)
T ss_pred cChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEE
Confidence 577888888888885532 23466789999999999999887532100 0 01111111
Q ss_pred EEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHh-----cCceEEEEEeCCCCCCccchhhhhcccCCCCCCcE
Q 038861 62 FVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKEL-----IKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSK 136 (1165)
Q Consensus 62 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~ 136 (1165)
... .....++. +.+.+.. .+++-++|+|+++.........+...+...++...
T Consensus 94 daa---------------------s~~gvd~i-r~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 94 DAA---------------------SNRGIDDI-RALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred eCc---------------------cCCCHHHH-HHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 110 01112211 1222221 35667999999976554455666655555444555
Q ss_pred EEEe-cCchHHHHhh-cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHH
Q 038861 137 IIVT-TRNRVVAERV-GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTL 207 (1165)
Q Consensus 137 iiiT-tR~~~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 207 (1165)
+|++ ++...+.... .....+++.+++.++....+...+...+. ....+.+..|++.++|.+-.+...
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi----~id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI----EYEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 5554 4443333222 23357899999999988888876533221 112367788999999976544433
No 115
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=5.9e-05 Score=87.84 Aligned_cols=193 Identities=13% Similarity=0.111 Sum_probs=104.2
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEE-cCCCCHHHHHHHHHHh
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFV-SEDFDVFRVTKSILMS 79 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~-~~~~~~~~~~~~i~~~ 79 (1165)
||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++...-....+...|... ......-...+.+...
T Consensus 19 vGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g 93 (620)
T PRK14954 19 TAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAG 93 (620)
T ss_pred cCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhcc
Confidence 588888888888885432 2345889999999999999988753211111110011100 0000000111111110
Q ss_pred ccC-----CCCCCCCHHHHHHHHHHH----hcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEec-CchHHHHh
Q 038861 80 ISN-----VTVNDNDLNSLQEKLEKE----LIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTT-RNRVVAER 149 (1165)
Q Consensus 80 l~~-----~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTt-R~~~~~~~ 149 (1165)
-.. ........+++...+... ..+++-++|+|+++.........+...+......+.+|++| +...+...
T Consensus 94 ~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~T 173 (620)
T PRK14954 94 TSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (620)
T ss_pred CCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 000 000112233333322222 23455588999997766555667766666554556555444 44444333
Q ss_pred -hcccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCch
Q 038861 150 -VGSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPL 202 (1165)
Q Consensus 150 -~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 202 (1165)
......+++.+++.++....+.+.+...+. . -..+.+..|++.++|..-
T Consensus 174 I~SRc~~vef~~l~~~ei~~~L~~i~~~egi-~---I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 174 IASRCQRFNFKRIPLDEIQSQLQMICRAEGI-Q---IDADALQLIARKAQGSMR 223 (620)
T ss_pred HHhhceEEecCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHhCCCHH
Confidence 233468999999999988777765432221 1 123778889999999554
No 116
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.08 E-value=6.9e-05 Score=79.97 Aligned_cols=196 Identities=19% Similarity=0.142 Sum_probs=117.1
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
+||+.|+..+..|+...-. ....+.+.|.|-+|.|||.+...++.+......-..++++.+..-.....++..|+..+
T Consensus 153 ~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~ 230 (529)
T KOG2227|consen 153 KGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSL 230 (529)
T ss_pred cchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHH
Confidence 5999999999999975431 22345689999999999999999986543322223456777776677888888888777
Q ss_pred cCCCCCCCCHHHHHHHHHHHhcC--ceEEEEEeCCCCCCccchhhhhcccCC-CCCCcEEEEecCch--H----HHHhhc
Q 038861 81 SNVTVNDNDLNSLQEKLEKELIK--KKFLLVLDDMWNENYNDWELLNRPFKA-GTSGSKIIVTTRNR--V----VAERVG 151 (1165)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~~--~~~LlvlDdv~~~~~~~~~~l~~~~~~-~~~~~~iiiTtR~~--~----~~~~~~ 151 (1165)
...........+..+.+.+...+ ..+|+|+|.++.-....-..+...|.+ .-+++|+|+.---. + ....+.
T Consensus 231 ~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~ 310 (529)
T KOG2227|consen 231 LQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLN 310 (529)
T ss_pred HHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhh
Confidence 32222222224555555555543 368999999854322222233333322 33566666543211 1 111111
Q ss_pred -----ccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCc
Q 038861 152 -----SVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLP 201 (1165)
Q Consensus 152 -----~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 201 (1165)
....+..+|.+.++-.++|..+.-..... .....+++-+++++.|.-
T Consensus 311 ~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~---~~~~~Aie~~ArKvaa~S 362 (529)
T KOG2227|consen 311 LDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTS---IFLNAAIELCARKVAAPS 362 (529)
T ss_pred hccCCCCceeeecCCCHHHHHHHHHHHHhccccc---ccchHHHHHHHHHhccCc
Confidence 22567788999999999999886333221 122234444555554433
No 117
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=0.00011 Score=83.69 Aligned_cols=190 Identities=14% Similarity=0.139 Sum_probs=105.9
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
||-+..++.+..++..+. -..+..++|+.|+||||+|+.+++.. .+...... .....-.....+....
T Consensus 17 iGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L-~c~~~~~~------~pC~~C~~C~~~~~~~ 84 (535)
T PRK08451 17 IGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARAL-VCEQGPSS------TPCDTCIQCQSALENR 84 (535)
T ss_pred cCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHh-cCCCCCCC------CCCcccHHHHHHhhcC
Confidence 577888888888885442 24567899999999999999887532 11110000 0000000000000000
Q ss_pred cC-----CCCCCCCHHHHHHHHHHH----hcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCch-HHHHh-
Q 038861 81 SN-----VTVNDNDLNSLQEKLEKE----LIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNR-VVAER- 149 (1165)
Q Consensus 81 ~~-----~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~-~~~~~- 149 (1165)
.. ........+++...+... ..+++-++|+|+++..+......+...+...++.+++|++|.+. .+...
T Consensus 85 h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI 164 (535)
T PRK08451 85 HIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATI 164 (535)
T ss_pred CCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHH
Confidence 00 000011233333332211 12456689999997766666666766666555677777766653 22211
Q ss_pred hcccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHH
Q 038861 150 VGSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKT 206 (1165)
Q Consensus 150 ~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 206 (1165)
......+++.+++.++..+.+...+...+. . -..+.+..|++.++|-+--+..
T Consensus 165 ~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi-~---i~~~Al~~Ia~~s~GdlR~aln 217 (535)
T PRK08451 165 LSRTQHFRFKQIPQNSIISHLKTILEKEGV-S---YEPEALEILARSGNGSLRDTLT 217 (535)
T ss_pred HhhceeEEcCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCcHHHHHH
Confidence 122368899999999998888765433221 1 1237788999999998844443
No 118
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=6.5e-05 Score=85.13 Aligned_cols=178 Identities=13% Similarity=0.149 Sum_probs=102.6
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhcc---C-C--------------ceEEEE
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRH---F-E--------------IKAWTF 62 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~---f-~--------------~~~w~~ 62 (1165)
||.+..++.+..++..+. -...+.++|+.|+||||+|+.+++...-... . . ..-|+.
T Consensus 20 iGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~ 94 (451)
T PRK06305 20 LGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLE 94 (451)
T ss_pred cCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEE
Confidence 688999999999886432 2356789999999999999988753211000 0 0 000111
Q ss_pred EcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH-----hcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEE
Q 038861 63 VSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKE-----LIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKI 137 (1165)
Q Consensus 63 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~i 137 (1165)
+... .....+++.. +.+. ..+++-++|+|+++.........+...+......+.+
T Consensus 95 i~g~-------------------~~~gid~ir~-i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~ 154 (451)
T PRK06305 95 IDGA-------------------SHRGIEDIRQ-INETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKF 154 (451)
T ss_pred eecc-------------------ccCCHHHHHH-HHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceE
Confidence 1110 0111222211 1111 1255678899999665544455565665554456666
Q ss_pred EEecCc-hHHHHhh-cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCc-hHHHHH
Q 038861 138 IVTTRN-RVVAERV-GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLP-LAAKTL 207 (1165)
Q Consensus 138 iiTtR~-~~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~ 207 (1165)
|++|.. ..+.... .....+++.++++++..+.+...+...+. .-..+.+..|++.++|.+ .|+..+
T Consensus 155 Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~----~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 155 FLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI----ETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 665543 3333222 23357899999999988888765432221 112367888999999965 444443
No 119
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=0.00012 Score=84.81 Aligned_cols=192 Identities=12% Similarity=0.086 Sum_probs=107.7
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHh-
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMS- 79 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~- 79 (1165)
||.+..++.|..++..+. -...+.++|+.|+||||+|+.++....-..... +..+.... ....+...
T Consensus 16 vGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~C~----~C~~i~~~~ 83 (584)
T PRK14952 16 VGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGVCE----SCVALAPNG 83 (584)
T ss_pred cCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCcccccH----HHHHhhccc
Confidence 688888899999886542 244678999999999999999885321111000 00000000 01111100
Q ss_pred ------ccCCCCCCCCHHHHHHHHHHH-----hcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEec-CchHHH
Q 038861 80 ------ISNVTVNDNDLNSLQEKLEKE-----LIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTT-RNRVVA 147 (1165)
Q Consensus 80 ------l~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTt-R~~~~~ 147 (1165)
+..........++..+ +++. ..+++-++|+|+++..+......+...+......+.+|++| ....+.
T Consensus 84 ~~~~dvieidaas~~gvd~iRe-l~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll 162 (584)
T PRK14952 84 PGSIDVVELDAASHGGVDDTRE-LRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVL 162 (584)
T ss_pred CCCceEEEeccccccCHHHHHH-HHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhH
Confidence 0000001112232221 2211 13455688999997776666777777776655566666555 444444
Q ss_pred Hhh-cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCch-HHHHHHh
Q 038861 148 ERV-GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPL-AAKTLGG 209 (1165)
Q Consensus 148 ~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~ 209 (1165)
... .....++..+++.++..+.+...+...+.. -..+.+..|++.++|-+- |+..+-.
T Consensus 163 ~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~----i~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 163 PTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV----VDDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred HHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 332 233679999999999888887654332211 122667888999999774 4444433
No 120
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=0.00011 Score=86.93 Aligned_cols=192 Identities=13% Similarity=0.134 Sum_probs=107.9
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
||.+..++.|..++.... -...+.++|+.|+||||+|+.+++.......... ....+.-...+.+....
T Consensus 19 iGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~------~~~c~~c~~c~~i~~~~ 87 (585)
T PRK14950 19 VGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK------GRPCGTCEMCRAIAEGS 87 (585)
T ss_pred cCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCCccCHHHHHHhcCC
Confidence 688888888888886442 2356789999999999999998853211000000 00011112222222211
Q ss_pred cCC-----CCCCCCHHHHHHHHHHHh-----cCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCc-hHHHHh
Q 038861 81 SNV-----TVNDNDLNSLQEKLEKEL-----IKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRN-RVVAER 149 (1165)
Q Consensus 81 ~~~-----~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~-~~~~~~ 149 (1165)
... .......+++.+ +.+.+ .+++-++|+|+++.........+...+......+.+|+++.+ ..+...
T Consensus 88 ~~d~~~i~~~~~~~vd~ir~-ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~t 166 (585)
T PRK14950 88 AVDVIEMDAASHTSVDDARE-IIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPAT 166 (585)
T ss_pred CCeEEEEeccccCCHHHHHH-HHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHH
Confidence 110 001122333222 22221 245668999999665555566666665554456666665544 333322
Q ss_pred h-cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHHH
Q 038861 150 V-GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLG 208 (1165)
Q Consensus 150 ~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 208 (1165)
. .....+++.+++.++..+.+.+.+...+.. -..+.+..|++.++|.+..+...-
T Consensus 167 I~SR~~~i~f~~l~~~el~~~L~~~a~~egl~----i~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 167 ILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN----LEPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred HHhccceeeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 223578899999999888887765332211 123678899999999886555443
No 121
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.02 E-value=3e-05 Score=77.98 Aligned_cols=185 Identities=17% Similarity=0.158 Sum_probs=105.9
Q ss_pred CchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEE-EEEcCCCCHHHHHHHHHHhc
Q 038861 2 GRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAW-TFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 2 GR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w-~~~~~~~~~~~~~~~i~~~l 80 (1165)
|.+..++-+...+.. ........|||+|.|||+-|..+++...-.+.|++++- .+++....+.-+-..
T Consensus 40 gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~K----- 108 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREK----- 108 (346)
T ss_pred chHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhh-----
Confidence 556666677777754 23457899999999999999988864333345554432 222222211100000
Q ss_pred cCCCCCCCCHHHHHHHHHHHh--cCce-EEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCchH-HHHhh-cccce
Q 038861 81 SNVTVNDNDLNSLQEKLEKEL--IKKK-FLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRV-VAERV-GSVRE 155 (1165)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l--~~~~-~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~-~~~~~-~~~~~ 155 (1165)
..+.+.......+.. -.++ -+||||+++....+.|..+...+......++.|+.+-... +.... ..-..
T Consensus 109 ------ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~K 182 (346)
T KOG0989|consen 109 ------IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQK 182 (346)
T ss_pred ------hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHH
Confidence 000000000000000 0112 4899999988888899999888777666676665554332 21111 12246
Q ss_pred eeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCC-CchHHHHH
Q 038861 156 YPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKG-LPLAAKTL 207 (1165)
Q Consensus 156 ~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~ 207 (1165)
+..++|.+++...-++..+...+.. -..++.+.|++.++| +--|+.++
T Consensus 183 frFk~L~d~~iv~rL~~Ia~~E~v~----~d~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 183 FRFKKLKDEDIVDRLEKIASKEGVD----IDDDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred hcCCCcchHHHHHHHHHHHHHhCCC----CCHHHHHHHHHHcCCcHHHHHHHH
Confidence 8889999998888887776443321 223778889999988 34444443
No 122
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.01 E-value=4.4e-05 Score=83.90 Aligned_cols=142 Identities=16% Similarity=0.179 Sum_probs=80.0
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
+|.++..+.+.+++..+. ...++.++|++|+||||+|+.+++. ... ....++... .....+...+ ..
T Consensus 24 ~~~~~~~~~l~~~~~~~~-----~~~~lll~G~~G~GKT~la~~l~~~--~~~---~~~~i~~~~-~~~~~i~~~l-~~- 90 (316)
T PHA02544 24 ILPAADKETFKSIVKKGR-----IPNMLLHSPSPGTGKTTVAKALCNE--VGA---EVLFVNGSD-CRIDFVRNRL-TR- 90 (316)
T ss_pred cCcHHHHHHHHHHHhcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH--hCc---cceEeccCc-ccHHHHHHHH-HH-
Confidence 588899999999886432 3467788999999999999999853 211 122333332 1111111111 00
Q ss_pred cCCCCCCCCHHHHHHHHHHH--hcCceEEEEEeCCCCC-CccchhhhhcccCCCCCCcEEEEecCchH-HHHhh-cccce
Q 038861 81 SNVTVNDNDLNSLQEKLEKE--LIKKKFLLVLDDMWNE-NYNDWELLNRPFKAGTSGSKIIVTTRNRV-VAERV-GSVRE 155 (1165)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~--l~~~~~LlvlDdv~~~-~~~~~~~l~~~~~~~~~~~~iiiTtR~~~-~~~~~-~~~~~ 155 (1165)
.... ..+.+-++|+|+++.. .......+...+.....++++|+||.... +.... .....
T Consensus 91 ----------------~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~ 154 (316)
T PHA02544 91 ----------------FASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRV 154 (316)
T ss_pred ----------------HHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceE
Confidence 0011 1234568899999654 22222334333444456778888886542 11111 22246
Q ss_pred eeCCCCCHHHHHHHHh
Q 038861 156 YPLGELSKEDCLRVLT 171 (1165)
Q Consensus 156 ~~l~~l~~~e~~~lf~ 171 (1165)
+.++..+.++..+++.
T Consensus 155 i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 155 IDFGVPTKEEQIEMMK 170 (316)
T ss_pred EEeCCCCHHHHHHHHH
Confidence 7777778887766554
No 123
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=9.4e-05 Score=86.92 Aligned_cols=171 Identities=15% Similarity=0.174 Sum_probs=103.7
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchh---------------------ccCCceE
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVR---------------------RHFEIKA 59 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~---------------------~~f~~~~ 59 (1165)
||.+..++.|..++..+. -...+.++|+.|+||||+|+.++....-. .+|+ +.
T Consensus 20 iGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n-~~ 93 (614)
T PRK14971 20 VGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN-IH 93 (614)
T ss_pred cCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc-eE
Confidence 688888999999986542 24568899999999999998876532100 0111 11
Q ss_pred EEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH----hcCceEEEEEeCCCCCCccchhhhhcccCCCCCCc
Q 038861 60 WTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKE----LIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGS 135 (1165)
Q Consensus 60 w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~ 135 (1165)
.+.... ....+++...+.+. ..+++-++|+|+++......+..+...+......+
T Consensus 94 ~ld~~~---------------------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~t 152 (614)
T PRK14971 94 ELDAAS---------------------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYA 152 (614)
T ss_pred Eecccc---------------------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCe
Confidence 111111 11222332222211 12345588999997766666777777766655566
Q ss_pred EEEEec-CchHHHHhh-cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCch
Q 038861 136 KIIVTT-RNRVVAERV-GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPL 202 (1165)
Q Consensus 136 ~iiiTt-R~~~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 202 (1165)
.+|++| +...+.... .....+++.++++++....+...+...+. .. ..+.+..|++.++|-.-
T Consensus 153 ifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi-~i---~~~al~~La~~s~gdlr 217 (614)
T PRK14971 153 IFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI-TA---EPEALNVIAQKADGGMR 217 (614)
T ss_pred EEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHH
Confidence 665544 444444332 23367999999999998888765433221 11 12678889999998654
No 124
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.01 E-value=6.4e-05 Score=92.08 Aligned_cols=176 Identities=15% Similarity=0.148 Sum_probs=92.5
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhcc------CCceEE-EEEcCCCCHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRH------FEIKAW-TFVSEDFDVFRVT 73 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~------f~~~~w-~~~~~~~~~~~~~ 73 (1165)
|||++++.++++.|..... .-+.++|++|+||||+|+.++.. +... ....+| +.++.
T Consensus 190 iGr~~ei~~~i~~l~r~~~------~n~lLvG~pGvGKTal~~~La~~--i~~~~v~~~l~~~~i~~l~l~~-------- 253 (852)
T TIGR03345 190 LGRDDEIRQMIDILLRRRQ------NNPILTGEAGVGKTAVVEGLALR--IAAGDVPPALRNVRLLSLDLGL-------- 253 (852)
T ss_pred cCCHHHHHHHHHHHhcCCc------CceeEECCCCCCHHHHHHHHHHH--HhhCCCCccccCCeEEEeehhh--------
Confidence 7999999999999865432 34679999999999999999853 2111 112233 21111
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHh--cCceEEEEEeCCCCCC-------ccchhhhhcccCCCCCCcEEEEecCch
Q 038861 74 KSILMSISNVTVNDNDLNSLQEKLEKEL--IKKKFLLVLDDMWNEN-------YNDWELLNRPFKAGTSGSKIIVTTRNR 144 (1165)
Q Consensus 74 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~~-------~~~~~~l~~~~~~~~~~~~iiiTtR~~ 144 (1165)
+..........+.....+.+.+ .+++++|++|+++... ..+...+..+.... ..-++|-||...
T Consensus 254 ------l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~-G~l~~IgaTT~~ 326 (852)
T TIGR03345 254 ------LQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR-GELRTIAATTWA 326 (852)
T ss_pred ------hhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC-CCeEEEEecCHH
Confidence 0000000111222222222222 2468999999995531 12222222222222 134566666653
Q ss_pred HHHH-------hhcccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCC
Q 038861 145 VVAE-------RVGSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKG 199 (1165)
Q Consensus 145 ~~~~-------~~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 199 (1165)
+... -......+.+++++.+++.++++...-.-.....-.-..++...+++.+.+
T Consensus 327 e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~r 388 (852)
T TIGR03345 327 EYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHR 388 (852)
T ss_pred HHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccc
Confidence 3211 112446899999999999999754431111111111123555666666654
No 125
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.00 E-value=5.5e-05 Score=85.67 Aligned_cols=170 Identities=12% Similarity=0.093 Sum_probs=100.4
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCce
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKKK 105 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 105 (1165)
..+.|+|..|+|||+|++++++.......-..+++++ ..++...+...+.... .....+++.++ ..
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~-~~ 207 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEIC-QN 207 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhc-cC
Confidence 4589999999999999999986322212122333433 3456666666554210 12233444443 34
Q ss_pred EEEEEeCCCCCCcc-ch-hhhhcccCC-CCCCcEEEEecCch-H--------HHHhhcccceeeCCCCCHHHHHHHHhhc
Q 038861 106 FLLVLDDMWNENYN-DW-ELLNRPFKA-GTSGSKIIVTTRNR-V--------VAERVGSVREYPLGELSKEDCLRVLTQH 173 (1165)
Q Consensus 106 ~LlvlDdv~~~~~~-~~-~~l~~~~~~-~~~~~~iiiTtR~~-~--------~~~~~~~~~~~~l~~l~~~e~~~lf~~~ 173 (1165)
-+||+||++..... .+ +.+...+.. ...|..||+|+... . +...+...-.+++++++.++-.+++.++
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 48889999654311 11 223222211 12345788887642 1 2222333357889999999999999988
Q ss_pred ccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHhhh
Q 038861 174 SLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLGGLL 211 (1165)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 211 (1165)
+...+. ...-.++++.-|++.++|.|-.+.-+...+
T Consensus 288 ~~~~gl--~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 288 IKNQNI--KQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHhcCC--CCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 743321 012234888999999999998877665444
No 126
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.99 E-value=0.00023 Score=73.98 Aligned_cols=162 Identities=18% Similarity=0.224 Sum_probs=101.1
Q ss_pred CchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhcc
Q 038861 2 GRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSIS 81 (1165)
Q Consensus 2 GR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~ 81 (1165)
+|+.++..+..++...+. .-+..|.|+|-+|.|||.+.+++.+... ...+|+++.+.++.+.++.+|+...+
T Consensus 10 ~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~IL~~~~ 81 (438)
T KOG2543|consen 10 CRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKILNKSQ 81 (438)
T ss_pred chHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHHHHHhc
Confidence 799999999998854321 2355679999999999999999996541 24579999999999999999999886
Q ss_pred CCCCCCCCHHH----HH---HHHHH--Hh--cCceEEEEEeCCCCCCccchhh-----hhcccCCCCCCcEEEEecCchH
Q 038861 82 NVTVNDNDLNS----LQ---EKLEK--EL--IKKKFLLVLDDMWNENYNDWEL-----LNRPFKAGTSGSKIIVTTRNRV 145 (1165)
Q Consensus 82 ~~~~~~~~~~~----~~---~~l~~--~l--~~~~~LlvlDdv~~~~~~~~~~-----l~~~~~~~~~~~~iiiTtR~~~ 145 (1165)
..+.+....+. .. ..+.+ .. +++.++||+|+++.-. +.+. +.....-......+|+++....
T Consensus 82 ~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lr--D~~a~ll~~l~~L~el~~~~~i~iils~~~~ 159 (438)
T KOG2543|consen 82 LADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALR--DMDAILLQCLFRLYELLNEPTIVIILSAPSC 159 (438)
T ss_pred cCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhh--ccchHHHHHHHHHHHHhCCCceEEEEecccc
Confidence 33322222221 11 22222 11 2468999999995532 2221 1111001112233444444332
Q ss_pred HHH---hhccc--ceeeCCCCCHHHHHHHHhhc
Q 038861 146 VAE---RVGSV--REYPLGELSKEDCLRVLTQH 173 (1165)
Q Consensus 146 ~~~---~~~~~--~~~~l~~l~~~e~~~lf~~~ 173 (1165)
... .++.. .++..+.-+.+|..+++.+.
T Consensus 160 e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 160 EKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred HHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 111 12332 35667889999999988764
No 127
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=0.00012 Score=88.27 Aligned_cols=185 Identities=13% Similarity=0.093 Sum_probs=106.1
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHh-
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMS- 79 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~- 79 (1165)
||.+..++.|..++.... -...+.++|+.|+||||+|+.+++...-....... .+... ...+.+...
T Consensus 18 iGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~---pCg~C----~sC~~~~~g~ 85 (824)
T PRK07764 18 IGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTST---PCGEC----DSCVALAPGG 85 (824)
T ss_pred cCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC---CCccc----HHHHHHHcCC
Confidence 688888899999886543 23467899999999999999987542111110000 00000 000111000
Q ss_pred --------ccCCCCCCCCHHHHHHHHHHH-----hcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCc-hH
Q 038861 80 --------ISNVTVNDNDLNSLQEKLEKE-----LIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRN-RV 145 (1165)
Q Consensus 80 --------l~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~-~~ 145 (1165)
+.. .....++++.+ +++. ..++.-++|||+++..+...+..|...+..-...+.+|++|.+ ..
T Consensus 86 ~~~~dv~eida--as~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 86 PGSLDVTEIDA--ASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred CCCCcEEEecc--cccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 000 01112333322 2221 2345568899999887767777777777766666666665543 34
Q ss_pred HHHhh-cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHH
Q 038861 146 VAERV-GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAA 204 (1165)
Q Consensus 146 ~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 204 (1165)
+...+ .....|++..++.++..+++.+.+..... . ...+....|++.++|-+..+
T Consensus 163 Ll~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv-~---id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 163 VIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV-P---VEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred hhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHH
Confidence 44332 23367899999999988877765322221 1 12256778999999977433
No 128
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.97 E-value=2.2e-06 Score=87.37 Aligned_cols=14 Identities=21% Similarity=0.067 Sum_probs=8.5
Q ss_pred CCccEEEEcCCCCc
Q 038861 962 QALKYLEVSYCSKL 975 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~ 975 (1165)
.+++.+++++|.+-
T Consensus 30 ~s~~~l~lsgnt~G 43 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFG 43 (382)
T ss_pred CceEEEeccCCchh
Confidence 45666666666543
No 129
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.97 E-value=0.00036 Score=68.90 Aligned_cols=180 Identities=17% Similarity=0.203 Sum_probs=107.6
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEE-EEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH--
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWT-FVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKE-- 100 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~-~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-- 100 (1165)
+.+++.++|.-|.|||.++++.... .. -+.++-+ .-....+...+...++..+...+ ..........+.+.
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s--~~--~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p--~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLAS--LN--EDQVAVVVIDKPTLSDATLLEAIVADLESQP--KVNVNAVLEQIDRELA 123 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHh--cC--CCceEEEEecCcchhHHHHHHHHHHHhccCc--cchhHHHHHHHHHHHH
Confidence 3468999999999999999955421 11 1222222 23345677788888888887622 22333333333322
Q ss_pred --h-cCce-EEEEEeCCCCCCccchhhhhcccCC---CCCCcEEEEecCchH-------HHHhh--cccceeeCCCCCHH
Q 038861 101 --L-IKKK-FLLVLDDMWNENYNDWELLNRPFKA---GTSGSKIIVTTRNRV-------VAERV--GSVREYPLGELSKE 164 (1165)
Q Consensus 101 --l-~~~~-~LlvlDdv~~~~~~~~~~l~~~~~~---~~~~~~iiiTtR~~~-------~~~~~--~~~~~~~l~~l~~~ 164 (1165)
. +++| +++++|+.++......+.+.....- ...--+|+..-..+- +.... +....|++.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 2 4666 9999999987666555555332211 111123555443321 11111 12223999999999
Q ss_pred HHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHhh
Q 038861 165 DCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLGGL 210 (1165)
Q Consensus 165 e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~ 210 (1165)
+...|++.+..+... .++--..+....|....+|.|.+|..++..
T Consensus 204 ~t~~yl~~~Le~a~~-~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 204 ETGLYLRHRLEGAGL-PEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHHhccCC-CcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 999999888654432 111122467778999999999999887653
No 130
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.96 E-value=9.3e-05 Score=78.20 Aligned_cols=136 Identities=12% Similarity=0.088 Sum_probs=68.6
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIK 103 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 103 (1165)
...-+.++|++|+||||+|+.++.............++.+.. .++. ...- ..........+.+.
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~----~~l~----~~~~-----g~~~~~~~~~~~~a--- 104 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER----ADLV----GEYI-----GHTAQKTREVIKKA--- 104 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----HHhh----hhhc-----cchHHHHHHHHHhc---
Confidence 445688999999999999999975321111111112333221 1111 1110 11112222223222
Q ss_pred ceEEEEEeCCCCCC--------ccchhhhhcccCCCCCCcEEEEecCchHHHH------hh-cc-cceeeCCCCCHHHHH
Q 038861 104 KKFLLVLDDMWNEN--------YNDWELLNRPFKAGTSGSKIIVTTRNRVVAE------RV-GS-VREYPLGELSKEDCL 167 (1165)
Q Consensus 104 ~~~LlvlDdv~~~~--------~~~~~~l~~~~~~~~~~~~iiiTtR~~~~~~------~~-~~-~~~~~l~~l~~~e~~ 167 (1165)
..-+|++|+++.-. ....+.+...+........+|+++...+... .+ .. ...+++++++.+|-.
T Consensus 105 ~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~ 184 (261)
T TIGR02881 105 LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELM 184 (261)
T ss_pred cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHH
Confidence 23488999996421 1122334343333333445666665433211 11 11 246888999999998
Q ss_pred HHHhhccc
Q 038861 168 RVLTQHSL 175 (1165)
Q Consensus 168 ~lf~~~~~ 175 (1165)
+++.+.+.
T Consensus 185 ~Il~~~~~ 192 (261)
T TIGR02881 185 EIAERMVK 192 (261)
T ss_pred HHHHHHHH
Confidence 88887653
No 131
>PRK06620 hypothetical protein; Validated
Probab=97.96 E-value=5.8e-05 Score=76.20 Aligned_cols=137 Identities=13% Similarity=0.079 Sum_probs=79.0
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCce
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKKK 105 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 105 (1165)
+.+.|||++|+|||+|++.+++... ..++. .... . + +.. +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~-------~~~~~--~~~~--------------------~-~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN-------AYIIK--DIFF--------------------N-E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC-------CEEcc--hhhh--------------------c-h-------hHH-hcC
Confidence 5689999999999999998875421 11211 0000 0 0 011 123
Q ss_pred EEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCchH-------HHHhhcccceeeCCCCCHHHHHHHHhhcccCCC
Q 038861 106 FLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRV-------VAERVGSVREYPLGELSKEDCLRVLTQHSLGAT 178 (1165)
Q Consensus 106 ~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~-------~~~~~~~~~~~~l~~l~~~e~~~lf~~~~~~~~ 178 (1165)
-++++||++.......-.+...+. ..|..||+|++... +...+....+++++++++++-.+++.+.+...+
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 478899996332111112211121 34668999887432 222333445899999999998888877653222
Q ss_pred CCCCCcchHHHHHHHHHHcCCCchHHHH
Q 038861 179 DFNTHQSLKEVREKIAMKCKGLPLAAKT 206 (1165)
Q Consensus 179 ~~~~~~~~~~~~~~i~~~~~g~Plal~~ 206 (1165)
..- .+++..-|++++.|---.+.-
T Consensus 165 -l~l---~~ev~~~L~~~~~~d~r~l~~ 188 (214)
T PRK06620 165 -VTI---SRQIIDFLLVNLPREYSKIIE 188 (214)
T ss_pred -CCC---CHHHHHHHHHHccCCHHHHHH
Confidence 111 237888888888875544443
No 132
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.95 E-value=7.4e-05 Score=83.47 Aligned_cols=175 Identities=17% Similarity=0.105 Sum_probs=93.5
Q ss_pred CCchHHHHHHHHHHhcCC-------CCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDD-------SRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVT 73 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~-------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~ 73 (1165)
.|++++++++.+.+...- ..+-..++-|.++|++|+|||++|+++++. .... |+.+.. ..+.
T Consensus 134 ~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~----~~l~ 202 (389)
T PRK03992 134 GGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG----SELV 202 (389)
T ss_pred CCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh----HHHh
Confidence 489999999988764210 012234567899999999999999999853 2222 233221 1111
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCC-----------ccchhhhhcc---cCC--CCCCcEE
Q 038861 74 KSILMSISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNEN-----------YNDWELLNRP---FKA--GTSGSKI 137 (1165)
Q Consensus 74 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-----------~~~~~~l~~~---~~~--~~~~~~i 137 (1165)
.. .. ..........+...-...+.+|++|+++... ......+... +.. ...+.+|
T Consensus 203 ~~----~~-----g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~V 273 (389)
T PRK03992 203 QK----FI-----GEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKI 273 (389)
T ss_pred Hh----hc-----cchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEE
Confidence 11 10 0111111122222223567899999995421 0011112111 111 1235677
Q ss_pred EEecCchHHHH-hh----cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCC
Q 038861 138 IVTTRNRVVAE-RV----GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGL 200 (1165)
Q Consensus 138 iiTtR~~~~~~-~~----~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 200 (1165)
|.||...+... .+ .-...++++..+.++..++|+.+..+... ... .....+++.+.|.
T Consensus 274 I~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-~~~----~~~~~la~~t~g~ 336 (389)
T PRK03992 274 IAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-ADD----VDLEELAELTEGA 336 (389)
T ss_pred EEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-CCc----CCHHHHHHHcCCC
Confidence 77776543222 11 12357899999999999999987543321 111 1245567777764
No 133
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.94 E-value=1.1e-07 Score=105.17 Aligned_cols=125 Identities=19% Similarity=0.059 Sum_probs=91.7
Q ss_pred CccEEEEcCCCCchhhhhhccc-CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEee
Q 038861 963 ALKYLEVSYCSKLESLAERLDN-TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIG 1041 (1165)
Q Consensus 963 ~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 1041 (1165)
.|...+.++|. +....+.... +.|+.|+|++|++...- .+..++.|++|+|++|.+....--....+ .|+.|.|+
T Consensus 165 ~L~~a~fsyN~-L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNR-LVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhh-HHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhh-hheeeeec
Confidence 46666777764 4445555555 88999999999987663 78889999999999998554333333344 49999999
Q ss_pred cCCCCCcCCcccCCCCCCceeeeccCCCCcccCC--CCCCCCcceEEEecCCCC
Q 038861 1042 YCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPE--DGFPTNLESLEVHDLKIS 1093 (1165)
Q Consensus 1042 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~--~~~~~~L~~L~l~~n~~~ 1093 (1165)
+|.+... ..+.+|.+|+.||+++|-+.+.--- .+.+..|+.|.|.+|++.
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 9987654 3478899999999999977543221 267888999999999986
No 134
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=8.9e-05 Score=87.05 Aligned_cols=192 Identities=13% Similarity=0.149 Sum_probs=105.8
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
+|.++.++.|..++.... -...+.++|+.|+||||+|+.++.... +...+.... .....-...+.+....
T Consensus 19 iGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~-c~~~~~~~~----~~Cg~C~~C~~i~~g~ 88 (620)
T PRK14948 19 VGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLN-CLNSDKPTP----EPCGKCELCRAIAAGN 88 (620)
T ss_pred cChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhc-CCCcCCCCC----CCCcccHHHHHHhcCC
Confidence 588888888888886542 124678999999999999999985421 111110000 0011111222222111
Q ss_pred cC-----CCCCCCCHHHHHHHHHHH----hcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecC-chHHHHhh
Q 038861 81 SN-----VTVNDNDLNSLQEKLEKE----LIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTR-NRVVAERV 150 (1165)
Q Consensus 81 ~~-----~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR-~~~~~~~~ 150 (1165)
.. ........+++.+.+... ..+++-++|+|+++......+..+...+......+.+|++|. ...+....
T Consensus 89 h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 89 ALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred CccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHH
Confidence 11 000112233333322211 124556899999977665566677666665444555555444 33333322
Q ss_pred -cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHH
Q 038861 151 -GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKT 206 (1165)
Q Consensus 151 -~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 206 (1165)
.....+++..++.++..+.+.+.+...+. . -..+.+..|++.++|.+..+..
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ia~kegi-~---is~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSEIAEKESI-E---IEPEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHHHhCC-C---CCHHHHHHHHHHcCCCHHHHHH
Confidence 23356888899999888777765432221 1 1126688899999997754443
No 135
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.94 E-value=6.3e-07 Score=93.23 Aligned_cols=275 Identities=19% Similarity=0.245 Sum_probs=168.3
Q ss_pred CCcceEEEcCCCCccccCC---CCCcccccEEEeccCCCCCCChHHHhhcCccccccccccceeecccccccCCchhhhc
Q 038861 792 SSLRELRISGCASLVSFPQ---AALPSQLRTFKIEHCNALESLPEAWMRNSNSSLQSLEIGTIEIEECNALESLPEAWMQ 868 (1165)
Q Consensus 792 ~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~l~~l~~~~~~ 868 (1165)
..|+.|.+++|.....-+. ....|++++|.+.+|..+++..- ....
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~-------------------------------~sla 186 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSL-------------------------------LSLA 186 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHH-------------------------------HHHH
Confidence 4688899999865443221 12357888888888874433211 0112
Q ss_pred CCCCCcceEEEeCCCCCcccc---ccCCccccceEeeccCcCcccccCCcCccccCCCCccccccCCCCcccccccceee
Q 038861 869 DSSTSLESLNIDGCDSLTYIA---RIQLPPSLRRLIISDCYNLRTLTGDQGICSSRSGRTSLTSFSSENELPATLEQLEV 945 (1165)
Q Consensus 869 ~~l~~L~~L~l~~~~~l~~~~---~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~ 945 (1165)
..++.|++|++..|..++... ....+++|++|+++-|+.+..-.-. ... .| ...++.+..
T Consensus 187 ~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~---~~~------------rG--~~~l~~~~~ 249 (483)
T KOG4341|consen 187 RYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQ---ALQ------------RG--CKELEKLSL 249 (483)
T ss_pred HhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcch---HHh------------cc--chhhhhhhh
Confidence 347889999999998887654 3467899999999999866541000 000 00 012333433
Q ss_pred cccccccccc--cCCCCCCCccEEEEcCCCCchhhhhhcc---cCccceeeeecccccccCC--cccCCCCCCCEEEEeC
Q 038861 946 RFCSNLAFLS--RNGNLPQALKYLEVSYCSKLESLAERLD---NTSLEVIAISYLENLKSLP--AGLHNLHHLQELKVYG 1018 (1165)
Q Consensus 946 ~~~~~l~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~L~~L~L~~n~~~~~~p--~~~~~l~~L~~L~L~~ 1018 (1165)
.+|...+... .....-.-+..+++..|..+++...+.. ...|++|+.+++...+..+ +--.+.++|+.|-+++
T Consensus 250 kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~ 329 (483)
T KOG4341|consen 250 KGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSG 329 (483)
T ss_pred cccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccc
Confidence 4454433221 1122223366777778876665543222 2789999999987755432 2235679999999999
Q ss_pred CCCCccc--cCCCCCCCCcCeEEeecCCCCCc--CCcccCCCCCCceeeeccCCCCccc-----CCC-CCCCCcceEEEe
Q 038861 1019 CPNLESF--PEGGLPSTKLTKLTIGYCENLKA--LPNCMHNLTSLLHLEIGWCRSLVSF-----PED-GFPTNLESLEVH 1088 (1165)
Q Consensus 1019 n~~~~~~--~~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~l~~n~~~~~~-----p~~-~~~~~L~~L~l~ 1088 (1165)
|+..+.. ..-..+.+.|+.|++..|..... +...-.+.+.|+.|.+++|..+... ... ..+..|+.+.++
T Consensus 330 c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~ 409 (483)
T KOG4341|consen 330 CQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELD 409 (483)
T ss_pred cchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeec
Confidence 9854322 11234568899999998875432 2222357789999999999875543 121 467889999999
Q ss_pred cCCCCCcccccccccCCCCcEEEEec
Q 038861 1089 DLKISKPLFEWGLNKFSSLRELQITG 1114 (1165)
Q Consensus 1089 ~n~~~~~~~~~~~~~l~~L~~L~l~~ 1114 (1165)
+++......-+.+..+++|+.+++-+
T Consensus 410 n~p~i~d~~Le~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 410 NCPLITDATLEHLSICRNLERIELID 435 (483)
T ss_pred CCCCchHHHHHHHhhCcccceeeeec
Confidence 99876433333355666777766654
No 136
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.94 E-value=6.2e-05 Score=91.71 Aligned_cols=154 Identities=19% Similarity=0.253 Sum_probs=83.4
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchh---ccC-CceEEEEEcCCCCHHHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVR---RHF-EIKAWTFVSEDFDVFRVTKSI 76 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~---~~f-~~~~w~~~~~~~~~~~~~~~i 76 (1165)
|||+++++++++.|..... .-+.++|++|+|||++|+.++...... ..+ ...+|.. +.. .+
T Consensus 185 igr~~ei~~~~~~L~~~~~------~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~----~l 249 (731)
T TIGR02639 185 IGREDELERTIQVLCRRKK------NNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMG----SL 249 (731)
T ss_pred cCcHHHHHHHHHHHhcCCC------CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHH----HH
Confidence 7999999999998865432 346899999999999999998532111 111 2334421 111 11
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHHh-cCceEEEEEeCCCCCC--------ccchhhhhcccCCCCCCcEEEEecCchHHH
Q 038861 77 LMSISNVTVNDNDLNSLQEKLEKEL-IKKKFLLVLDDMWNEN--------YNDWELLNRPFKAGTSGSKIIVTTRNRVVA 147 (1165)
Q Consensus 77 ~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~--------~~~~~~l~~~~~~~~~~~~iiiTtR~~~~~ 147 (1165)
.. ... -..+.++....+.+.+ +.++.+|++|+++.-. ..+...+..+....+ .-++|-+|...+..
T Consensus 250 ~a---~~~-~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g-~i~~IgaTt~~e~~ 324 (731)
T TIGR02639 250 LA---GTK-YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG-KLRCIGSTTYEEYK 324 (731)
T ss_pred hh---hcc-ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC-CeEEEEecCHHHHH
Confidence 11 000 0112333333333333 3467899999995321 011122222222221 23455555442211
Q ss_pred ------Hh-hcccceeeCCCCCHHHHHHHHhhcc
Q 038861 148 ------ER-VGSVREYPLGELSKEDCLRVLTQHS 174 (1165)
Q Consensus 148 ------~~-~~~~~~~~l~~l~~~e~~~lf~~~~ 174 (1165)
.. ......+++++++.++..+++....
T Consensus 325 ~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 325 NHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 11 1234679999999999999998653
No 137
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.93 E-value=3.4e-05 Score=84.39 Aligned_cols=107 Identities=14% Similarity=0.112 Sum_probs=67.7
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
++.++.++.+...+... +.+.++|++|+|||++|+++++.......+..+.|+.+....+..++.....
T Consensus 178 ~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r--- 246 (459)
T PRK11331 178 FIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR--- 246 (459)
T ss_pred cCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC---
Confidence 35677888888888643 3588899999999999999986544445677788999988877665554321
Q ss_pred cCCCCCCCCHH-HHHHHHHHHh--cCceEEEEEeCCCCCCcc
Q 038861 81 SNVTVNDNDLN-SLQEKLEKEL--IKKKFLLVLDDMWNENYN 119 (1165)
Q Consensus 81 ~~~~~~~~~~~-~~~~~l~~~l--~~~~~LlvlDdv~~~~~~ 119 (1165)
.......-.. ...+.+.+.. .++++++|+|++......
T Consensus 247 -P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~ 287 (459)
T PRK11331 247 -PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLS 287 (459)
T ss_pred -CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHH
Confidence 1110000000 1112222222 246899999999765543
No 138
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=0.00031 Score=81.51 Aligned_cols=189 Identities=15% Similarity=0.090 Sum_probs=106.6
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
||-+..++.+..++.... -...+.++|+.|+||||+|+.+++..--...... ..+....+- +.+...-
T Consensus 19 iGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~i~~~~ 86 (563)
T PRK06647 19 EGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KSIDNDN 86 (563)
T ss_pred cCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HHHHcCC
Confidence 588888888888886543 2456889999999999999999864211110000 000000000 1111100
Q ss_pred cC-----CCCCCCCHHHHHHHHHH----HhcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCc-hHHHHhh
Q 038861 81 SN-----VTVNDNDLNSLQEKLEK----ELIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRN-RVVAERV 150 (1165)
Q Consensus 81 ~~-----~~~~~~~~~~~~~~l~~----~l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~-~~~~~~~ 150 (1165)
.. ........+++...... -..+++-++|+|+++.-+...+..+...+...++.+.+|++|.. ..+....
T Consensus 87 ~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI 166 (563)
T PRK06647 87 SLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATI 166 (563)
T ss_pred CCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHH
Confidence 00 00001222332222211 12355668999999776656667777766655556666665543 3333322
Q ss_pred -cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHH
Q 038861 151 -GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAK 205 (1165)
Q Consensus 151 -~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 205 (1165)
.....++..+++.++..+.+...+...+. +-..+.+..|++.++|-+-.+.
T Consensus 167 ~SRc~~~~f~~l~~~el~~~L~~i~~~egi----~id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 167 KSRCQHFNFRLLSLEKIYNMLKKVCLEDQI----KYEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred HHhceEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 23356899999999988888776533221 1123778889999999775443
No 139
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.93 E-value=1.9e-05 Score=84.60 Aligned_cols=90 Identities=18% Similarity=0.182 Sum_probs=61.3
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCC--CCHHHHHHHHHHhccCCCCCCCCHH--HHHHHH---
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSED--FDVFRVTKSILMSISNVTVNDNDLN--SLQEKL--- 97 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~--~~~~~l--- 97 (1165)
-..++|+|++|+|||||++.+++.... .+|+..+|+.+.+. .++.++++.+...+-....+..... .....+
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 346899999999999999999975433 37998999998866 6899999998654433322221111 111211
Q ss_pred -HHH-hcCceEEEEEeCCCC
Q 038861 98 -EKE-LIKKKFLLVLDDMWN 115 (1165)
Q Consensus 98 -~~~-l~~~~~LlvlDdv~~ 115 (1165)
... -.+++++|++|++..
T Consensus 247 Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHcCCCeEEEEEChhH
Confidence 111 258899999999943
No 140
>CHL00181 cbbX CbbX; Provisional
Probab=97.92 E-value=0.00034 Score=74.24 Aligned_cols=134 Identities=14% Similarity=0.060 Sum_probs=71.5
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCce
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKKK 105 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 105 (1165)
..+.++|++|+||||+|+.++......+.-...-|+.++. ..+. ..+.+. ........+.+. ..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l~----~~~~g~-----~~~~~~~~l~~a---~g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDLV----GQYIGH-----TAPKTKEVLKKA---MG 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHHH----HHHhcc-----chHHHHHHHHHc---cC
Confidence 3578999999999999999975321111111222444441 1222 211111 111122222222 23
Q ss_pred EEEEEeCCCCC---------CccchhhhhcccCCCCCCcEEEEecCchHHHHhh--------cccceeeCCCCCHHHHHH
Q 038861 106 FLLVLDDMWNE---------NYNDWELLNRPFKAGTSGSKIIVTTRNRVVAERV--------GSVREYPLGELSKEDCLR 168 (1165)
Q Consensus 106 ~LlvlDdv~~~---------~~~~~~~l~~~~~~~~~~~~iiiTtR~~~~~~~~--------~~~~~~~l~~l~~~e~~~ 168 (1165)
-+|++|+++.. .......+...+.....+.+||+++......... .....+++++++.+|..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 49999999542 1111233334344444566777777643322111 123578999999999998
Q ss_pred HHhhccc
Q 038861 169 VLTQHSL 175 (1165)
Q Consensus 169 lf~~~~~ 175 (1165)
++...+.
T Consensus 204 I~~~~l~ 210 (287)
T CHL00181 204 IAKIMLE 210 (287)
T ss_pred HHHHHHH
Confidence 8887753
No 141
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.86 E-value=0.00049 Score=73.92 Aligned_cols=193 Identities=14% Similarity=0.099 Sum_probs=108.4
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcch-------------hccCCceEEEEEcCCC
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRV-------------RRHFEIKAWTFVSEDF 67 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~-------------~~~f~~~~w~~~~~~~ 67 (1165)
+|.++.++.+.+.+.++. -.....++|+.|+||+++|.+++...-- ...++...|+.-....
T Consensus 7 iGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 7 IGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred CCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 588889999999986543 2367899999999999999888643110 1123344454321100
Q ss_pred CHHHHHHHHHHhcc--CCCCCCCCHHHHHHHHHHHh-----cCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEe
Q 038861 68 DVFRVTKSILMSIS--NVTVNDNDLNSLQEKLEKEL-----IKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVT 140 (1165)
Q Consensus 68 ~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiT 140 (1165)
+-..+....+...+ ......-..++. +.+.+.+ .+++-++|+|+++..+......+...+...+ .+.+|++
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi 159 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILI 159 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEE
Confidence 00000011111111 000111222332 2333333 3456789999997666555666666555444 4445544
Q ss_pred c-CchHHHHhh-cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHH
Q 038861 141 T-RNRVVAERV-GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTL 207 (1165)
Q Consensus 141 t-R~~~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 207 (1165)
| +...+.... .....+++.++++++..+.+........ .......++..++|-|.....+
T Consensus 160 ~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-------~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 160 APSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-------LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred ECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-------chhHHHHHHHHcCCCHHHHHHH
Confidence 4 443443332 3346899999999999999987632111 0112467889999999655543
No 142
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.86 E-value=8.9e-05 Score=91.49 Aligned_cols=153 Identities=20% Similarity=0.237 Sum_probs=83.9
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchh---ccC-CceEEEEEcCCCCHHHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVR---RHF-EIKAWTFVSEDFDVFRVTKSI 76 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~---~~f-~~~~w~~~~~~~~~~~~~~~i 76 (1165)
|||+++++++++.|..... .-+.++|++|+|||++|+.++...... ... ...+|.. +.. .+
T Consensus 182 igr~~ei~~~~~~L~r~~~------~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l-----~~~----~l 246 (821)
T CHL00095 182 IGREKEIERVIQILGRRTK------NNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL-----DIG----LL 246 (821)
T ss_pred CCcHHHHHHHHHHHccccc------CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe-----eHH----HH
Confidence 7999999999999965432 346799999999999999998532110 111 2334421 111 11
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHHh-cCceEEEEEeCCCCCC-------ccchhhhhcccCCCCCCcEEEEecCchHHHH
Q 038861 77 LMSISNVTVNDNDLNSLQEKLEKEL-IKKKFLLVLDDMWNEN-------YNDWELLNRPFKAGTSGSKIIVTTRNRVVAE 148 (1165)
Q Consensus 77 ~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~-------~~~~~~l~~~~~~~~~~~~iiiTtR~~~~~~ 148 (1165)
+ .+... ..+.++....+.+.+ +.++.+|++|+++.-. ..+...+..+....+ .-++|.+|...+...
T Consensus 247 ~---ag~~~-~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~ey~~ 321 (821)
T CHL00095 247 L---AGTKY-RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDEYRK 321 (821)
T ss_pred h---ccCCC-ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHHHHH
Confidence 1 11111 112333333333333 3568999999994210 111222222222222 345666665544321
Q ss_pred h-------hcccceeeCCCCCHHHHHHHHhhc
Q 038861 149 R-------VGSVREYPLGELSKEDCLRVLTQH 173 (1165)
Q Consensus 149 ~-------~~~~~~~~l~~l~~~e~~~lf~~~ 173 (1165)
. ......+++.+.+.++...+++..
T Consensus 322 ~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 322 HIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 1 123457888999999988887653
No 143
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.86 E-value=1.8e-06 Score=98.39 Aligned_cols=166 Identities=25% Similarity=0.210 Sum_probs=74.1
Q ss_pred CCccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEee
Q 038861 962 QALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIG 1041 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 1041 (1165)
.+|..|++.+|.+.......-..++|++|++++|.+... .++..++.|+.|++++|.+... ..+..+++|+.++++
T Consensus 95 ~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLS 170 (414)
T ss_pred cceeeeeccccchhhcccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhcccCC
Confidence 445555555554332222122235555555555555443 2234444455555555554331 223334555555555
Q ss_pred cCCCCCcCC-cccCCCCCCceeeeccCCCCcccCCCCCCCCcceEEEecCCCCCcccccccccCCC--CcEEEEecCCCC
Q 038861 1042 YCENLKALP-NCMHNLTSLLHLEIGWCRSLVSFPEDGFPTNLESLEVHDLKISKPLFEWGLNKFSS--LRELQITGGCPV 1118 (1165)
Q Consensus 1042 ~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~--L~~L~l~~n~~~ 1118 (1165)
+|.+...-+ . ...+.+++.+++++|.+. .+.....+..+..+++.+|++...- ++..++. |+.+++++|.+.
T Consensus 171 ~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~-~i~~~~~~~~l~~~~l~~n~i~~~~---~l~~~~~~~L~~l~l~~n~i~ 245 (414)
T KOG0531|consen 171 YNRIVDIENDE-LSELISLEELDLGGNSIR-EIEGLDLLKKLVLLSLLDNKISKLE---GLNELVMLHLRELYLSGNRIS 245 (414)
T ss_pred cchhhhhhhhh-hhhccchHHHhccCCchh-cccchHHHHHHHHhhcccccceecc---CcccchhHHHHHHhcccCccc
Confidence 555544322 1 345555555555555552 2221122333333455555554311 1222222 566666665544
Q ss_pred cc-cCCCCCCcccEEEecC
Q 038861 1119 LL-SSPWFPASLTVLHISY 1136 (1165)
Q Consensus 1119 ~~-~~~~~~~~L~~L~l~~ 1136 (1165)
.. ........+..|++.+
T Consensus 246 ~~~~~~~~~~~l~~l~~~~ 264 (414)
T KOG0531|consen 246 RSPEGLENLKNLPVLDLSS 264 (414)
T ss_pred cccccccccccccccchhh
Confidence 43 2222234455555544
No 144
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.85 E-value=0.00031 Score=74.66 Aligned_cols=132 Identities=14% Similarity=0.075 Sum_probs=70.4
Q ss_pred EEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCceE
Q 038861 27 VISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKKKF 106 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 106 (1165)
-+.++|++|+|||++|+.++......+.....-|+.+.. .+ +...+.+. ........+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~-----~~~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGH-----TAPKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhccc-----chHHHHHHHHHc---cCc
Confidence 588999999999999987764321112222223444432 11 22222111 111222222222 335
Q ss_pred EEEEeCCCCC---------CccchhhhhcccCCCCCCcEEEEecCchHHHHhh--------cccceeeCCCCCHHHHHHH
Q 038861 107 LLVLDDMWNE---------NYNDWELLNRPFKAGTSGSKIIVTTRNRVVAERV--------GSVREYPLGELSKEDCLRV 169 (1165)
Q Consensus 107 LlvlDdv~~~---------~~~~~~~l~~~~~~~~~~~~iiiTtR~~~~~~~~--------~~~~~~~l~~l~~~e~~~l 169 (1165)
+|++|+++.- ....+..+...+.....+.+||+++......... .....+++++++.+|-.++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899999522 0111233444444444566777776543221111 1135689999999999998
Q ss_pred Hhhcc
Q 038861 170 LTQHS 174 (1165)
Q Consensus 170 f~~~~ 174 (1165)
+...+
T Consensus 204 ~~~~l 208 (284)
T TIGR02880 204 AGLML 208 (284)
T ss_pred HHHHH
Confidence 88765
No 145
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00021 Score=83.88 Aligned_cols=190 Identities=14% Similarity=0.145 Sum_probs=103.2
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
||.+..++.|..++..+. -...+.++|+.|+||||+|+.++....-...... -.+ ..-.....+...-
T Consensus 19 iGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~---~~c----~~c~~c~~i~~g~ 86 (576)
T PRK14965 19 TGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLTA---EPC----NVCPPCVEITEGR 86 (576)
T ss_pred cCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC---CCC----CccHHHHHHhcCC
Confidence 688888888888886542 2356789999999999999988753211110000 000 0000001110000
Q ss_pred cC-----CCCCCCCHHHHHHHHHHHh-----cCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEE-ecCchHHHHh
Q 038861 81 SN-----VTVNDNDLNSLQEKLEKEL-----IKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIV-TTRNRVVAER 149 (1165)
Q Consensus 81 ~~-----~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iii-TtR~~~~~~~ 149 (1165)
.. ........+++ +.+.+.+ .+++-++|+|+++..+......+...+......+.+|+ ||....+...
T Consensus 87 ~~d~~eid~~s~~~v~~i-r~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 87 SVDVFEIDGASNTGVDDI-RELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPIT 165 (576)
T ss_pred CCCeeeeeccCccCHHHH-HHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHH
Confidence 00 00001122222 1222222 24455889999976665556667666655555666655 4444444433
Q ss_pred h-cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCc-hHHHHH
Q 038861 150 V-GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLP-LAAKTL 207 (1165)
Q Consensus 150 ~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~ 207 (1165)
. .....++..+++.++....+...+...+. .-..+.+..|++.++|-. .|+..+
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~i~~~egi----~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 166 ILSRCQRFDFRRIPLQKIVDRLRYIADQEGI----SISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 23357889999999988777764322221 112367788999999855 455444
No 146
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.83 E-value=0.00034 Score=75.53 Aligned_cols=96 Identities=15% Similarity=0.146 Sum_probs=64.4
Q ss_pred ceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCchH-HHHh-hcccceeeCCCCCHHHHHHHHhhcccCCCCCC
Q 038861 104 KKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRV-VAER-VGSVREYPLGELSKEDCLRVLTQHSLGATDFN 181 (1165)
Q Consensus 104 ~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~-~~~~-~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~ 181 (1165)
++-++|+|+++..+......+...+...+.++.+|++|.+.. +... ...-..+.+.+++.+++.+.+...... .
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~-~--- 181 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE-S--- 181 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc-C---
Confidence 344557799987776667777776666556777777777653 3322 223357899999999999988765311 1
Q ss_pred CCcchHHHHHHHHHHcCCCchHHHHH
Q 038861 182 THQSLKEVREKIAMKCKGLPLAAKTL 207 (1165)
Q Consensus 182 ~~~~~~~~~~~i~~~~~g~Plal~~~ 207 (1165)
..+.+..++..++|.|.....+
T Consensus 182 ----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 ----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ----ChHHHHHHHHHcCCCHHHHHHH
Confidence 1144667889999999754433
No 147
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.83 E-value=0.00014 Score=82.31 Aligned_cols=160 Identities=18% Similarity=0.103 Sum_probs=91.8
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccC-C-ceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHF-E-IKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIK 103 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f-~-~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 103 (1165)
..+.|+|++|+|||+||+++++. ..... . .++|++. .++...+...+... ..+ .+++..+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~----~f~~~~~~ 193 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLN----EFREKYRK 193 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHH----HHHHHHHh
Confidence 45899999999999999999964 33322 2 3445543 34555555544321 122 23333333
Q ss_pred ceEEEEEeCCCCCCc-cch-hhhhcccCC-CCCCcEEEEecC-chHHHH--------hhcccceeeCCCCCHHHHHHHHh
Q 038861 104 KKFLLVLDDMWNENY-NDW-ELLNRPFKA-GTSGSKIIVTTR-NRVVAE--------RVGSVREYPLGELSKEDCLRVLT 171 (1165)
Q Consensus 104 ~~~LlvlDdv~~~~~-~~~-~~l~~~~~~-~~~~~~iiiTtR-~~~~~~--------~~~~~~~~~l~~l~~~e~~~lf~ 171 (1165)
+.-+|++||++.... ..+ +.+...+.. ...|..||+||. .+.-.. .+.....+++++.+.++-.+++.
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~ 273 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIAR 273 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHH
Confidence 456899999964211 111 122121111 113456888874 332211 12223478899999999999998
Q ss_pred hcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHH
Q 038861 172 QHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKT 206 (1165)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 206 (1165)
+.+..... . -..+++..|++.+.|.--.+.-
T Consensus 274 ~~~~~~~~-~---l~~ev~~~Ia~~~~~~~R~L~g 304 (440)
T PRK14088 274 KMLEIEHG-E---LPEEVLNFVAENVDDNLRRLRG 304 (440)
T ss_pred HHHHhcCC-C---CCHHHHHHHHhccccCHHHHHH
Confidence 88643221 1 1237788899988886544443
No 148
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.83 E-value=2.2e-06 Score=97.58 Aligned_cols=214 Identities=23% Similarity=0.145 Sum_probs=120.8
Q ss_pred cccccccccceeecccccccCCchhhhcCCCCCcceEEEeCCCCCccccccCCccccceEeeccCcCcccccCCcCcccc
Q 038861 841 SSLQSLEIGTIEIEECNALESLPEAWMQDSSTSLESLNIDGCDSLTYIARIQLPPSLRRLIISDCYNLRTLTGDQGICSS 920 (1165)
Q Consensus 841 ~~L~~l~l~~~~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 920 (1165)
..++.+.+..+.+..... . ...+.+|+.|++.+|.+.........+++|++|++++|. ++.+.+
T Consensus 72 ~~l~~l~l~~n~i~~~~~--~------l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~------- 135 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILN--H------LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG------- 135 (414)
T ss_pred HhHHhhccchhhhhhhhc--c------cccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc-------
Confidence 456666666666555111 0 123677888888876544433336667777777777763 222110
Q ss_pred CCCCccccccCCCCcccccccceeecccccccccccCCCCCCCccEEEEcCCCCchhhhhhcccCccceeeeeccccccc
Q 038861 921 RSGRTSLTSFSSENELPATLEQLEVRFCSNLAFLSRNGNLPQALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKS 1000 (1165)
Q Consensus 921 ~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~ 1000 (1165)
+..+ ..|+.|++++|.+ ..+......+.|+.+++++|.+...
T Consensus 136 -------------------l~~l------------------~~L~~L~l~~N~i-~~~~~~~~l~~L~~l~l~~n~i~~i 177 (414)
T KOG0531|consen 136 -------------------LSTL------------------TLLKELNLSGNLI-SDISGLESLKSLKLLDLSYNRIVDI 177 (414)
T ss_pred -------------------hhhc------------------cchhhheeccCcc-hhccCCccchhhhcccCCcchhhhh
Confidence 1111 2377777777743 3344333357777777777777554
Q ss_pred CC-cccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCC--CceeeeccCCCCcccCCCC
Q 038861 1001 LP-AGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTS--LLHLEIGWCRSLVSFPEDG 1077 (1165)
Q Consensus 1001 ~p-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~--L~~L~l~~n~~~~~~p~~~ 1077 (1165)
-+ . ...+.+++.+++.+|.+...- .+..+..+..+++..|.+...-+ +..+.. |+.+++++|++........
T Consensus 178 e~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~ 252 (414)
T KOG0531|consen 178 ENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSPEGLE 252 (414)
T ss_pred hhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcccccccccc
Confidence 33 2 466777777777777755432 23333455555666666554322 223333 7778888887733212225
Q ss_pred CCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCC
Q 038861 1078 FPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGC 1116 (1165)
Q Consensus 1078 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 1116 (1165)
.+..+..|++.+|++... ..+...+.+..++...+.
T Consensus 253 ~~~~l~~l~~~~n~~~~~---~~~~~~~~~~~~~~~~~~ 288 (414)
T KOG0531|consen 253 NLKNLPVLDLSSNRISNL---EGLERLPKLSELWLNDNK 288 (414)
T ss_pred ccccccccchhhcccccc---ccccccchHHHhccCcch
Confidence 677777788888777642 124555566666655543
No 149
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.82 E-value=0.00066 Score=79.32 Aligned_cols=187 Identities=14% Similarity=0.133 Sum_probs=103.1
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
||.+..++.+..++.... -...+.++|+.|+||||+|+.++....-...-+. .....-.....+....
T Consensus 19 iGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~-------~pC~~C~~C~~i~~g~ 86 (559)
T PRK05563 19 VGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG-------EPCNECEICKAITNGS 86 (559)
T ss_pred cCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCccHHHHHHhcCC
Confidence 688999999999986543 2456788999999999999988753111000000 0000001111111110
Q ss_pred cCC-----CCCCCCHHHHHHHHHHH-----hcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEec-CchHHHHh
Q 038861 81 SNV-----TVNDNDLNSLQEKLEKE-----LIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTT-RNRVVAER 149 (1165)
Q Consensus 81 ~~~-----~~~~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTt-R~~~~~~~ 149 (1165)
... .......+++.+ +++. ..+++-++|+|+++......+..+...+...+....+|++| ....+...
T Consensus 87 ~~dv~eidaas~~~vd~ir~-i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~t 165 (559)
T PRK05563 87 LMDVIEIDAASNNGVDEIRD-IRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPAT 165 (559)
T ss_pred CCCeEEeeccccCCHHHHHH-HHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHH
Confidence 000 001122222222 2222 13456788999997666556666766665544455555544 44333322
Q ss_pred h-cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHH
Q 038861 150 V-GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAA 204 (1165)
Q Consensus 150 ~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 204 (1165)
. .....++..+++.++..+.+...+...+. +-..+.+..|++.++|-+..+
T Consensus 166 I~SRc~~~~f~~~~~~ei~~~L~~i~~~egi----~i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDKEGI----EYEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHhHheEEecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 2 23357889999999988888775532221 112367788899998876533
No 150
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.81 E-value=0.00025 Score=80.55 Aligned_cols=161 Identities=17% Similarity=0.154 Sum_probs=91.3
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccC--CceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhc
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHF--EIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELI 102 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 102 (1165)
...+.|+|++|+|||+||+++++. ..... ..+++++ ..++...+...+... ..+ .+.+.++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~-----~~~----~~~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVS------SEKFTNDFVNALRNN-----KME----EFKEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEE------HHHHHHHHHHHHHcC-----CHH----HHHHHHH
Confidence 346899999999999999999964 33322 2344553 233444444444321 222 2233333
Q ss_pred CceEEEEEeCCCCCCccch--hhhhcccCCC-CCCcEEEEecCc-hHHH--------HhhcccceeeCCCCCHHHHHHHH
Q 038861 103 KKKFLLVLDDMWNENYNDW--ELLNRPFKAG-TSGSKIIVTTRN-RVVA--------ERVGSVREYPLGELSKEDCLRVL 170 (1165)
Q Consensus 103 ~~~~LlvlDdv~~~~~~~~--~~l~~~~~~~-~~~~~iiiTtR~-~~~~--------~~~~~~~~~~l~~l~~~e~~~lf 170 (1165)
. .-+||+||++......+ +.+...+... ..+..+|+|+.. +... ..+.....+++++.+.++-.+++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 34888999965322111 1222211111 134567777764 2211 11222246889999999999999
Q ss_pred hhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHH
Q 038861 171 TQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTL 207 (1165)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 207 (1165)
.+.+..... .-.+++...|++.+.|..-.+.-+
T Consensus 278 ~~~~~~~~~----~l~~e~l~~ia~~~~~~~r~l~~~ 310 (405)
T TIGR00362 278 QKKAEEEGL----ELPDEVLEFIAKNIRSNVRELEGA 310 (405)
T ss_pred HHHHHHcCC----CCCHHHHHHHHHhcCCCHHHHHHH
Confidence 988644322 112377888999998876654443
No 151
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.81 E-value=3.9e-07 Score=100.97 Aligned_cols=122 Identities=19% Similarity=0.146 Sum_probs=66.4
Q ss_pred CCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC--CCCCCcceEEE
Q 038861 1010 HLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED--GFPTNLESLEV 1087 (1165)
Q Consensus 1010 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~--~~~~~L~~L~l 1087 (1165)
.|.+.+.++|.+ .....++.-++.|+.|+|++|.+... ..+..++.|++|||++|.+ ..+|.. ..+ .|..|.+
T Consensus 165 ~L~~a~fsyN~L-~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L-~~vp~l~~~gc-~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRL-VLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCL-RHVPQLSMVGC-KLQLLNL 239 (1096)
T ss_pred hHhhhhcchhhH-HhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchh-ccccccchhhh-hheeeee
Confidence 455555666553 22233444455666666666665553 2456666666666666666 444443 222 2666666
Q ss_pred ecCCCCCcccccccccCCCCcEEEEecCCCCcccCC---CCCCcccEEEecCCCC
Q 038861 1088 HDLKISKPLFEWGLNKFSSLRELQITGGCPVLLSSP---WFPASLTVLHISYMPN 1139 (1165)
Q Consensus 1088 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~~~~ 1139 (1165)
++|.+.... ++.++.+|+.||++.|++...+.- +....|..|.|.+||.
T Consensus 240 rnN~l~tL~---gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNALTTLR---GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccHHHhhh---hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 666655321 355666666666666655433322 2234566666666653
No 152
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=4.4e-07 Score=89.68 Aligned_cols=176 Identities=16% Similarity=0.183 Sum_probs=127.1
Q ss_pred Cccceeeeeccccccc-CCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCC--cccCCCCCCce
Q 038861 985 TSLEVIAISYLENLKS-LPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALP--NCMHNLTSLLH 1061 (1165)
Q Consensus 985 ~~L~~L~L~~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~--~~~~~l~~L~~ 1061 (1165)
+.|++|||+.-.++.. +...+..+.+|+.|.|.|+.+...+...+..-.+|+.|+|+.|...+.-. --+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 6799999999766543 33446778999999999999887777778888899999999998655432 24578999999
Q ss_pred eeeccCCCCcccCCC---CCCCCcceEEEecCCCC--CcccccccccCCCCcEEEEecCCCCcccCCC-----CCCcccE
Q 038861 1062 LEIGWCRSLVSFPED---GFPTNLESLEVHDLKIS--KPLFEWGLNKFSSLRELQITGGCPVLLSSPW-----FPASLTV 1131 (1165)
Q Consensus 1062 L~l~~n~~~~~~p~~---~~~~~L~~L~l~~n~~~--~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-----~~~~L~~ 1131 (1165)
|+++.|-+....-.. .--++|+.|+++++.-. ..-....-+.+|+|..||||.+.. +..+. -++.|++
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~--l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVM--LKNDCFQEFFKFNYLQH 342 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccc--cCchHHHHHHhcchhee
Confidence 999999875543221 33478999999997633 111223345799999999997521 12121 2568999
Q ss_pred EEecCCCCcccH-HHhhhcCCccceEeecCCC
Q 038861 1132 LHISYMPNLESL-SLIVENLTSLEILILCKCP 1162 (1165)
Q Consensus 1132 L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~ 1162 (1165)
|.+++|..+--= -..++..|+|.+|++-||-
T Consensus 343 lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 343 LSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 999998765211 1237788999999998884
No 153
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.76 E-value=0.00015 Score=86.74 Aligned_cols=152 Identities=20% Similarity=0.289 Sum_probs=85.0
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhcc-----CCceEEEEEcCCCCHHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRH-----FEIKAWTFVSEDFDVFRVTKS 75 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-----f~~~~w~~~~~~~~~~~~~~~ 75 (1165)
|||+++++++++.|..... .-+.++|++|+|||++|+.++... +... .+..+|.. +.. .
T Consensus 189 iGR~~ei~~~i~iL~r~~~------~n~LLvGppGvGKT~lae~la~~i-~~~~vP~~l~~~~~~~l-----~~~----~ 252 (758)
T PRK11034 189 IGREKELERAIQVLCRRRK------NNPLLVGESGVGKTAIAEGLAWRI-VQGDVPEVMADCTIYSL-----DIG----S 252 (758)
T ss_pred cCCCHHHHHHHHHHhccCC------CCeEEECCCCCCHHHHHHHHHHHH-HhcCCCchhcCCeEEec-----cHH----H
Confidence 7999999999999976422 235789999999999999988531 1111 12333321 111 1
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHHh-cCceEEEEEeCCCCC--------CccchhhhhcccCCCCCCcEEEEecCchHH
Q 038861 76 ILMSISNVTVNDNDLNSLQEKLEKEL-IKKKFLLVLDDMWNE--------NYNDWELLNRPFKAGTSGSKIIVTTRNRVV 146 (1165)
Q Consensus 76 i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~--------~~~~~~~l~~~~~~~~~~~~iiiTtR~~~~ 146 (1165)
++. +... ..+.+...+.+.+.+ +.++.+|++|+++.. ...+...+..++... ..-++|-+|...+.
T Consensus 253 lla---G~~~-~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~E~ 327 (758)
T PRK11034 253 LLA---GTKY-RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEF 327 (758)
T ss_pred Hhc---ccch-hhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChHHH
Confidence 111 1110 112233333333333 346789999999531 112222233333322 23455555554432
Q ss_pred HH-------hhcccceeeCCCCCHHHHHHHHhhc
Q 038861 147 AE-------RVGSVREYPLGELSKEDCLRVLTQH 173 (1165)
Q Consensus 147 ~~-------~~~~~~~~~l~~l~~~e~~~lf~~~ 173 (1165)
.. -.+....+++++++.+++.+++...
T Consensus 328 ~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 328 SNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred HHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 11 1124468999999999999998865
No 154
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.75 E-value=0.00031 Score=87.11 Aligned_cols=152 Identities=16% Similarity=0.176 Sum_probs=82.7
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhcc------CCceEEEEEcCCCCHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRH------FEIKAWTFVSEDFDVFRVTK 74 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~------f~~~~w~~~~~~~~~~~~~~ 74 (1165)
|||++++.++++.|.... ..-+.++|++|+|||++|+.++.. +... ....+|.. +...+
T Consensus 176 igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~l-----~~~~l-- 240 (852)
T TIGR03346 176 IGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLAL-----DMGAL-- 240 (852)
T ss_pred CCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEEe-----eHHHH--
Confidence 799999999999996543 234678999999999999988853 2211 12223321 11111
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHh-c-CceEEEEEeCCCCCC-------ccchhhhhcccCCCCCCcEEEEecCchH
Q 038861 75 SILMSISNVTVNDNDLNSLQEKLEKEL-I-KKKFLLVLDDMWNEN-------YNDWELLNRPFKAGTSGSKIIVTTRNRV 145 (1165)
Q Consensus 75 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-~-~~~~LlvlDdv~~~~-------~~~~~~l~~~~~~~~~~~~iiiTtR~~~ 145 (1165)
.. +.... .+.+.....+.+.+ + +++.+|++|+++.-. ..+...+..+....+ .-++|-+|...+
T Consensus 241 --~a---~~~~~-g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt~~e 313 (852)
T TIGR03346 241 --IA---GAKYR-GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATTLDE 313 (852)
T ss_pred --hh---cchhh-hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCcHHH
Confidence 10 00001 12222333333333 2 468999999995421 011222223322222 234555555443
Q ss_pred HHH-------hhcccceeeCCCCCHHHHHHHHhhcc
Q 038861 146 VAE-------RVGSVREYPLGELSKEDCLRVLTQHS 174 (1165)
Q Consensus 146 ~~~-------~~~~~~~~~l~~l~~~e~~~lf~~~~ 174 (1165)
... .......+.++..+.++..+++....
T Consensus 314 ~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 314 YRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 211 11234578899999999999887653
No 155
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=5.2e-07 Score=89.18 Aligned_cols=192 Identities=17% Similarity=0.157 Sum_probs=128.6
Q ss_pred CCccEEEEcCCCCchh-hhhhccc-CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCcccc--CCCCCCCCcCe
Q 038861 962 QALKYLEVSYCSKLES-LAERLDN-TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFP--EGGLPSTKLTK 1037 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~-~~~~~~~-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~--~~~~~l~~L~~ 1037 (1165)
..|++||++...+... +-..... ..|+.|.+.++.+...+-..+..=.+|+.|+|+.|+-..... --+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4599999998754321 2222222 889999999999988777777777899999999997544321 23567899999
Q ss_pred EEeecCCCCCcCCcc-cCC-CCCCceeeeccCCCCc---ccCCC-CCCCCcceEEEecCCCCCcccccccccCCCCcEEE
Q 038861 1038 LTIGYCENLKALPNC-MHN-LTSLLHLEIGWCRSLV---SFPED-GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQ 1111 (1165)
Q Consensus 1038 L~L~~n~~~~~~~~~-~~~-l~~L~~L~l~~n~~~~---~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 1111 (1165)
|+|+.|......... ..+ =++|+.|+++++.-.- .+... ...++|..||||+|-....---..|.+++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 999999876643211 111 2589999999986321 11111 56899999999998755322223477899999999
Q ss_pred EecCCCCcccCC----CCCCcccEEEecCCCCcccHHHhhhcCCccc
Q 038861 1112 ITGGCPVLLSSP----WFPASLTVLHISYMPNLESLSLIVENLTSLE 1154 (1165)
Q Consensus 1112 l~~n~~~~~~~~----~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~ 1154 (1165)
++.+ -...+.. .-.|+|.+||+.+|-.-+........+++|+
T Consensus 345 lsRC-Y~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 345 LSRC-YDIIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLK 390 (419)
T ss_pred hhhh-cCCChHHeeeeccCcceEEEEeccccCchHHHHHHHhCcccc
Confidence 9864 2222211 1247999999999765544444444555543
No 156
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.68 E-value=0.00097 Score=66.68 Aligned_cols=185 Identities=16% Similarity=0.165 Sum_probs=88.0
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
||.++-++.+.=++..... .+...--|.++|++|.||||||.-+++...+ .+ -++-+....-..-+..++..+
T Consensus 29 iGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv--n~----k~tsGp~leK~gDlaaiLt~L 101 (332)
T COG2255 29 IGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANELGV--NL----KITSGPALEKPGDLAAILTNL 101 (332)
T ss_pred cChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcC--Ce----EecccccccChhhHHHHHhcC
Confidence 5666666666555543222 4455667999999999999999998864322 21 111111111111112222222
Q ss_pred cCCCCC-CCCHHHHHHHHH----HHhcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCchHHHHhhcc--c
Q 038861 81 SNVTVN-DNDLNSLQEKLE----KELIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRVVAERVGS--V 153 (1165)
Q Consensus 81 ~~~~~~-~~~~~~~~~~l~----~~l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~~~~~~~~--~ 153 (1165)
...+.- .+..+.+...+. -.+.+-+.=|++..=... ..+...+ ++-.-|=-|||.-.+...+.. -
T Consensus 102 e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~A-----rsv~ldL---ppFTLIGATTr~G~lt~PLrdRFG 173 (332)
T COG2255 102 EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAA-----RSIRLDL---PPFTLIGATTRAGMLTNPLRDRFG 173 (332)
T ss_pred CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCcc-----ceEeccC---CCeeEeeeccccccccchhHHhcC
Confidence 211110 011111111111 111222222222211000 0011111 223345568886433222211 1
Q ss_pred ceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHH
Q 038861 154 REYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAA 204 (1165)
Q Consensus 154 ~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 204 (1165)
.+.+++-.+.+|-.+...+.+..-.. +-..+.+.+|+++..|-|--.
T Consensus 174 i~~rlefY~~~eL~~Iv~r~a~~l~i----~i~~~~a~eIA~rSRGTPRIA 220 (332)
T COG2255 174 IIQRLEFYTVEELEEIVKRSAKILGI----EIDEEAALEIARRSRGTPRIA 220 (332)
T ss_pred CeeeeecCCHHHHHHHHHHHHHHhCC----CCChHHHHHHHHhccCCcHHH
Confidence 35677788889988888877632221 122377899999999999533
No 157
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.66 E-value=0.00056 Score=84.33 Aligned_cols=152 Identities=15% Similarity=0.166 Sum_probs=81.3
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhcc-----CCceEE-EEEcCCCCHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRH-----FEIKAW-TFVSEDFDVFRVTK 74 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-----f~~~~w-~~~~~~~~~~~~~~ 74 (1165)
|||+.++.++++.|..... .-+.++|++|+|||++|+.++... ..+. ....+| +.++. +
T Consensus 181 igr~~ei~~~i~iL~r~~~------~n~lL~G~pGvGKT~l~~~la~~i-~~~~vp~~l~~~~~~~l~l~~------l-- 245 (857)
T PRK10865 181 IGRDEEIRRTIQVLQRRTK------NNPVLIGEPGVGKTAIVEGLAQRI-INGEVPEGLKGRRVLALDMGA------L-- 245 (857)
T ss_pred CCCHHHHHHHHHHHhcCCc------CceEEECCCCCCHHHHHHHHHHHh-hcCCCchhhCCCEEEEEehhh------h--
Confidence 7999999999999965432 346799999999999999988532 1111 112222 22111 0
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHh--cCceEEEEEeCCCCCCc-------cchhhhhcccCCCCCCcEEEEecCchH
Q 038861 75 SILMSISNVTVNDNDLNSLQEKLEKEL--IKKKFLLVLDDMWNENY-------NDWELLNRPFKAGTSGSKIIVTTRNRV 145 (1165)
Q Consensus 75 ~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~~~-------~~~~~l~~~~~~~~~~~~iiiTtR~~~ 145 (1165)
.. +... ....++....+.+.+ .+++++|++|+++.... .+...+..+....+ .-++|-+|...+
T Consensus 246 --~a---g~~~-~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g-~l~~IgaTt~~e 318 (857)
T PRK10865 246 --VA---GAKY-RGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG-ELHCVGATTLDE 318 (857)
T ss_pred --hh---ccch-hhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC-CCeEEEcCCCHH
Confidence 00 0001 111222222222222 25689999999954211 11222323322222 345555555444
Q ss_pred HHH------h-hcccceeeCCCCCHHHHHHHHhhcc
Q 038861 146 VAE------R-VGSVREYPLGELSKEDCLRVLTQHS 174 (1165)
Q Consensus 146 ~~~------~-~~~~~~~~l~~l~~~e~~~lf~~~~ 174 (1165)
... . ......+.+...+.++..++++...
T Consensus 319 ~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 319 YRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 211 1 1233467788889999999887543
No 158
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.66 E-value=0.00068 Score=76.60 Aligned_cols=153 Identities=16% Similarity=0.125 Sum_probs=85.6
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCce
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKKK 105 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 105 (1165)
..+.|+|+.|+|||+|++++++. .......+++++ ...+...+...+... . ...+++..+ ..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~------~~~f~~~~~~~l~~~-----~----~~~f~~~~~-~~ 203 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVR------SELFTEHLVSAIRSG-----E----MQRFRQFYR-NV 203 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEee------HHHHHHHHHHHHhcc-----h----HHHHHHHcc-cC
Confidence 56899999999999999999964 322223344543 233444444444211 1 122333333 34
Q ss_pred EEEEEeCCCCCCccch--hhhhcccCC-CCCCcEEEEecCc-hH--------HHHhhcccceeeCCCCCHHHHHHHHhhc
Q 038861 106 FLLVLDDMWNENYNDW--ELLNRPFKA-GTSGSKIIVTTRN-RV--------VAERVGSVREYPLGELSKEDCLRVLTQH 173 (1165)
Q Consensus 106 ~LlvlDdv~~~~~~~~--~~l~~~~~~-~~~~~~iiiTtR~-~~--------~~~~~~~~~~~~l~~l~~~e~~~lf~~~ 173 (1165)
-++++||++......+ +.+...+.. ...|..||+||.. +. +...+.....+++.+++.++-.+++.++
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence 5888899955322111 222222111 0135568888754 22 1112223357889999999999999887
Q ss_pred ccCCCCCCCCcchHHHHHHHHHHcCCC
Q 038861 174 SLGATDFNTHQSLKEVREKIAMKCKGL 200 (1165)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~i~~~~~g~ 200 (1165)
+..... .- ..++..-|+..+.|.
T Consensus 284 ~~~~~~-~l---~~evl~~la~~~~~d 306 (445)
T PRK12422 284 AEALSI-RI---EETALDFLIEALSSN 306 (445)
T ss_pred HHHcCC-CC---CHHHHHHHHHhcCCC
Confidence 644321 11 236666677777654
No 159
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.64 E-value=0.00057 Score=68.03 Aligned_cols=120 Identities=21% Similarity=0.230 Sum_probs=65.0
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
+|-|++++.|++-...-- .+.+..-|.+||..|+|||++++++.+. ....--. -|.+.+
T Consensus 30 ~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~~--y~~~GLR--lIev~k--------------- 88 (249)
T PF05673_consen 30 IGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLNE--YADQGLR--LIEVSK--------------- 88 (249)
T ss_pred cCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHHH--HhhcCce--EEEECH---------------
Confidence 577888888765443211 1123456889999999999999999853 2221111 122221
Q ss_pred cCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCC-CCccchhhhhcccC----CCCCCcEEEEecCchHHH
Q 038861 81 SNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWN-ENYNDWELLNRPFK----AGTSGSKIIVTTRNRVVA 147 (1165)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~-~~~~~~~~l~~~~~----~~~~~~~iiiTtR~~~~~ 147 (1165)
..-.+...+.+.++. +..|++|.+||+.= .....+..+...+. ..+.+..|..||-.+.+.
T Consensus 89 ----~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 89 ----EDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred ----HHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 111223333333332 45799999999832 22234555544333 234455555666555443
No 160
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.64 E-value=6.3e-05 Score=70.49 Aligned_cols=21 Identities=43% Similarity=0.501 Sum_probs=19.0
Q ss_pred EEEEccCCchHHHHHHHHhCC
Q 038861 28 ISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 28 v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
|.|+|++|+|||++|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999954
No 161
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.63 E-value=0.0018 Score=69.13 Aligned_cols=95 Identities=9% Similarity=0.107 Sum_probs=64.3
Q ss_pred CceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCch-HHHHhh-cccceeeCCCCCHHHHHHHHhhcccCCCCC
Q 038861 103 KKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNR-VVAERV-GSVREYPLGELSKEDCLRVLTQHSLGATDF 180 (1165)
Q Consensus 103 ~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~-~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~ 180 (1165)
+++-++|+|+++..+...-..+...+..-++++.+|++|... .+.... ..-..+.+.+++.+++.+.+....
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~------ 185 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG------ 185 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC------
Confidence 456699999997766555666666666656677777777654 333332 233578899999999998887541
Q ss_pred CCCcchHHHHHHHHHHcCCCchHHHHH
Q 038861 181 NTHQSLKEVREKIAMKCKGLPLAAKTL 207 (1165)
Q Consensus 181 ~~~~~~~~~~~~i~~~~~g~Plal~~~ 207 (1165)
.+ .+.+..++..++|.|+.....
T Consensus 186 ~~----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 186 VS----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred CC----hHHHHHHHHHcCCCHHHHHHH
Confidence 11 133667899999999865543
No 162
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.62 E-value=4.3e-05 Score=53.96 Aligned_cols=35 Identities=34% Similarity=0.473 Sum_probs=24.6
Q ss_pred ccccccccCCCCccccCcccccCCCccEEeccCcc
Q 038861 411 RHLRFLNLSGTNIQILPESINSLYNLHTILLEDCR 445 (1165)
Q Consensus 411 ~~Lr~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~ 445 (1165)
++|++|++++|+|+.+|..+++|++|++|++++|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 36777777777777777777777777777777764
No 163
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.60 E-value=0.00041 Score=79.79 Aligned_cols=160 Identities=18% Similarity=0.163 Sum_probs=91.3
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCC--ceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhc
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFE--IKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELI 102 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~--~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 102 (1165)
...+.|+|++|+|||+||+++++. ....+. .+++++. .++...+...+.. ... ..+.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~------~~~~~~~~~~~~~-----~~~----~~~~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTS------EKFTNDFVNALRN-----NTM----EEFKEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHHc-----CcH----HHHHHHHh
Confidence 346899999999999999999964 333332 3344432 2333444444321 111 22333333
Q ss_pred CceEEEEEeCCCCCCccc-h-hhhhcccCC-CCCCcEEEEecCch--HH-------HHhhcccceeeCCCCCHHHHHHHH
Q 038861 103 KKKFLLVLDDMWNENYND-W-ELLNRPFKA-GTSGSKIIVTTRNR--VV-------AERVGSVREYPLGELSKEDCLRVL 170 (1165)
Q Consensus 103 ~~~~LlvlDdv~~~~~~~-~-~~l~~~~~~-~~~~~~iiiTtR~~--~~-------~~~~~~~~~~~l~~l~~~e~~~lf 170 (1165)
+.-+||+||++...... + +.+...+.. ...|..||+|+... .+ ...+.....+++++.+.++-.+++
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il 289 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAIL 289 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHH
Confidence 34489999996532111 1 122221111 11244577777643 11 122233357899999999999999
Q ss_pred hhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHH
Q 038861 171 TQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKT 206 (1165)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 206 (1165)
.+.+..... .-.+++...|++.++|..-.+.-
T Consensus 290 ~~~~~~~~~----~l~~e~l~~ia~~~~~~~R~l~~ 321 (450)
T PRK00149 290 KKKAEEEGI----DLPDEVLEFIAKNITSNVRELEG 321 (450)
T ss_pred HHHHHHcCC----CCCHHHHHHHHcCcCCCHHHHHH
Confidence 988754221 12237888899999987665443
No 164
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=0.0011 Score=70.95 Aligned_cols=173 Identities=9% Similarity=0.069 Sum_probs=98.5
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccC--------CceEEEEEcCCCCHHHHHHHHHH
Q 038861 7 KDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHF--------EIKAWTFVSEDFDVFRVTKSILM 78 (1165)
Q Consensus 7 ~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f--------~~~~w~~~~~~~~~~~~~~~i~~ 78 (1165)
-+.+.+.+..+. -.....++|+.|+||+++|.+++...--.... +.+-++..+..+|+..+
T Consensus 11 ~~~l~~~~~~~r-----l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------ 79 (325)
T PRK06871 11 YQQITQAFQQGL-----GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL------ 79 (325)
T ss_pred HHHHHHHHHcCC-----cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE------
Confidence 345566664432 23567899999999999999887531110100 00001111111111100
Q ss_pred hccCCCCCCCCHHHHHHHHHHHh-----cCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCch-HHHHhh-c
Q 038861 79 SISNVTVNDNDLNSLQEKLEKEL-----IKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNR-VVAERV-G 151 (1165)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~-~~~~~~-~ 151 (1165)
.........+++..+ +.+.+ .+++-++|+|+++..+......+...+...++++.+|++|.+. .+.... .
T Consensus 80 --~p~~~~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S 156 (325)
T PRK06871 80 --EPIDNKDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS 156 (325)
T ss_pred --ccccCCCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh
Confidence 000001123333332 22222 3556688899997777666777777777767778777777664 333332 2
Q ss_pred ccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCch
Q 038861 152 SVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPL 202 (1165)
Q Consensus 152 ~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 202 (1165)
.-..+.+.++++++..+.+...... . ...+...++.++|.|.
T Consensus 157 RC~~~~~~~~~~~~~~~~L~~~~~~------~---~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 157 RCQTWLIHPPEEQQALDWLQAQSSA------E---ISEILTALRINYGRPL 198 (325)
T ss_pred hceEEeCCCCCHHHHHHHHHHHhcc------C---hHHHHHHHHHcCCCHH
Confidence 3367899999999999888865311 1 1235667888999995
No 165
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.59 E-value=0.0013 Score=69.25 Aligned_cols=41 Identities=22% Similarity=0.221 Sum_probs=27.1
Q ss_pred EEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHH
Q 038861 27 VISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRV 72 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~ 72 (1165)
.|.+.|++|+|||++|+.++. ... ...+++++....+..++
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~--~lg---~~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVAR--KRD---RPVMLINGDAELTTSDL 63 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHH--HhC---CCEEEEeCCccCCHHHH
Confidence 478999999999999999984 221 12344555554444443
No 166
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.57 E-value=0.00013 Score=68.73 Aligned_cols=102 Identities=18% Similarity=0.081 Sum_probs=58.2
Q ss_pred CCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceEEEecCCCCCcccccccccCCCCcEEE
Q 038861 1033 TKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQ 1111 (1165)
Q Consensus 1033 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 1111 (1165)
.+...+||++|++... ..|..++.|..|.+++|++...-|.. ..+++|+.|.+.+|.+.....-..++.+|+|++|.
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 4556666666665442 23666667777777777765444444 55666777777777666433333466667777777
Q ss_pred EecCCCCcccCC-----CCCCcccEEEecC
Q 038861 1112 ITGGCPVLLSSP-----WFPASLTVLHISY 1136 (1165)
Q Consensus 1112 l~~n~~~~~~~~-----~~~~~L~~L~l~~ 1136 (1165)
+-+|-....... .-.|+|+.||+.+
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 666543322211 1235566666544
No 167
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.57 E-value=0.00065 Score=77.91 Aligned_cols=159 Identities=17% Similarity=0.157 Sum_probs=91.5
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccC--CceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHF--EIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIK 103 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 103 (1165)
..+.|+|..|+|||.|++++++. ....+ ..+++++ ..++..++...+.. ... ..+++.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yit------aeef~~el~~al~~-----~~~----~~f~~~y~~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVS------SEEFTNEFINSIRD-----GKG----DSFRRRYRE 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEee------HHHHHHHHHHHHHh-----ccH----HHHHHHhhc
Confidence 34899999999999999999964 33222 2334544 33444444443321 111 223333333
Q ss_pred ceEEEEEeCCCCCCccc-h-hhhhcccCCC-CCCcEEEEecCch---------HHHHhhcccceeeCCCCCHHHHHHHHh
Q 038861 104 KKFLLVLDDMWNENYND-W-ELLNRPFKAG-TSGSKIIVTTRNR---------VVAERVGSVREYPLGELSKEDCLRVLT 171 (1165)
Q Consensus 104 ~~~LlvlDdv~~~~~~~-~-~~l~~~~~~~-~~~~~iiiTtR~~---------~~~~~~~~~~~~~l~~l~~~e~~~lf~ 171 (1165)
.-+||+||++-..... | +.+...+... ..|..|||||+.. .+...+...-.+++++.+.+.-.+++.
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 3478899996542221 2 1222222111 2355688888752 122333444678999999999999999
Q ss_pred hcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHH
Q 038861 172 QHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKT 206 (1165)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 206 (1165)
+++..... .- ..+++.-|++++.+..-.|.-
T Consensus 457 kka~~r~l-~l---~~eVi~yLa~r~~rnvR~Leg 487 (617)
T PRK14086 457 KKAVQEQL-NA---PPEVLEFIASRISRNIRELEG 487 (617)
T ss_pred HHHHhcCC-CC---CHHHHHHHHHhccCCHHHHHH
Confidence 88644332 12 237778888887766544443
No 168
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.56 E-value=0.0004 Score=80.92 Aligned_cols=47 Identities=23% Similarity=0.291 Sum_probs=36.3
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCC
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
+|-++.++++..++..... .....++++|+|++|+||||+++.++..
T Consensus 87 ~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 87 AVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred cCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4667888888888865432 2234568999999999999999999853
No 169
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.56 E-value=0.0015 Score=71.33 Aligned_cols=158 Identities=11% Similarity=0.054 Sum_probs=87.0
Q ss_pred chHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhcc-CCceEEEEEcCCCCHHHHHHHHHHhcc
Q 038861 3 RKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRH-FEIKAWTFVSEDFDVFRVTKSILMSIS 81 (1165)
Q Consensus 3 R~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~w~~~~~~~~~~~~~~~i~~~l~ 81 (1165)
-+..++.+...+.++. -.....++|+.|+||||+|+.+++.. .+.. .... .++.. ...+.+...-.
T Consensus 11 q~~~~~~L~~~~~~~~-----l~ha~Lf~G~~G~gk~~~a~~la~~l-~c~~~~~~~---~cg~C----~~c~~~~~~~h 77 (329)
T PRK08058 11 QPVVVKMLQNSIAKNR-----LSHAYLFEGAKGTGKKATALWLAKSL-FCLERNGVE---PCGTC----TNCKRIDSGNH 77 (329)
T ss_pred HHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHH-CCCCCCCCC---CCCcC----HHHHHHhcCCC
Confidence 4556667777775432 34567999999999999998886431 1111 0000 00000 00000000000
Q ss_pred ------CCCCCCCCHHHHHHHHHHH----hcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCch-HHHHhh
Q 038861 82 ------NVTVNDNDLNSLQEKLEKE----LIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNR-VVAERV 150 (1165)
Q Consensus 82 ------~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~-~~~~~~ 150 (1165)
.........+++.+.+... ..+.+-++|+|+++..+......+...+...+.++.+|++|..+ .+....
T Consensus 78 pD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TI 157 (329)
T PRK08058 78 PDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTI 157 (329)
T ss_pred CCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHH
Confidence 0000112233333322221 23455689999997766656667777777666777777777654 333222
Q ss_pred -cccceeeCCCCCHHHHHHHHhhc
Q 038861 151 -GSVREYPLGELSKEDCLRVLTQH 173 (1165)
Q Consensus 151 -~~~~~~~l~~l~~~e~~~lf~~~ 173 (1165)
.....+++.++++++..+.+...
T Consensus 158 rSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 158 LSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HhhceeeeCCCCCHHHHHHHHHHc
Confidence 33467999999999998888754
No 170
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.51 E-value=0.00031 Score=78.38 Aligned_cols=175 Identities=15% Similarity=0.117 Sum_probs=92.7
Q ss_pred CchHHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHH
Q 038861 2 GRKKDKDEIVELLLRDDS-------RADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTK 74 (1165)
Q Consensus 2 GR~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~ 74 (1165)
|.+++++++.+.+.-.-. .+-..++-|.++|++|+|||++|+++++. ....| +.+... .+..
T Consensus 187 Gl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f-----i~V~~s----eL~~ 255 (438)
T PTZ00361 187 GLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF-----LRVVGS----ELIQ 255 (438)
T ss_pred CHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE-----EEEecc----hhhh
Confidence 678888888877642100 01234556889999999999999999963 32232 222111 1111
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCc----------cc----hhhhhcccCC--CCCCcEEE
Q 038861 75 SILMSISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENY----------ND----WELLNRPFKA--GTSGSKII 138 (1165)
Q Consensus 75 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~----------~~----~~~l~~~~~~--~~~~~~ii 138 (1165)
. .. ..........+.....+.+.+|++|+++.... .. ...+...+.. ...+.+||
T Consensus 256 k----~~-----Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI 326 (438)
T PTZ00361 256 K----YL-----GDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVI 326 (438)
T ss_pred h----hc-----chHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEE
Confidence 1 00 01111222223333346788999999743100 00 1111111111 12356788
Q ss_pred EecCchHHHHh-h----cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCc
Q 038861 139 VTTRNRVVAER-V----GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLP 201 (1165)
Q Consensus 139 iTtR~~~~~~~-~----~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 201 (1165)
+||...+.... + .-...++++..+.++..++|..++..... .... ....++..+.|.-
T Consensus 327 ~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l-~~dv----dl~~la~~t~g~s 389 (438)
T PTZ00361 327 MATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTL-AEDV----DLEEFIMAKDELS 389 (438)
T ss_pred EecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCC-CcCc----CHHHHHHhcCCCC
Confidence 88876543332 1 12357899999999999999977533221 1111 2345666666543
No 171
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=2.6e-05 Score=77.54 Aligned_cols=63 Identities=16% Similarity=0.248 Sum_probs=38.4
Q ss_pred hcCccccccccccceeecccccccCCchhhhcCCCCCcceEEEeCCCCCccccccC-CccccceEeecc
Q 038861 837 RNSNSSLQSLEIGTIEIEECNALESLPEAWMQDSSTSLESLNIDGCDSLTYIARIQ-LPPSLRRLIISD 904 (1165)
Q Consensus 837 ~~~~~~L~~l~l~~~~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~ 904 (1165)
+...+.++.++|..|.+++...+..+. .++|.|+.|+++.|+....+.... -..+|+.|.+.+
T Consensus 67 ~~~~~~v~elDL~~N~iSdWseI~~il-----e~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNg 130 (418)
T KOG2982|consen 67 GSSVTDVKELDLTGNLISDWSEIGAIL-----EQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNG 130 (418)
T ss_pred HHHhhhhhhhhcccchhccHHHHHHHH-----hcCccceEeeccCCcCCCccccCcccccceEEEEEcC
Confidence 334455666677777776666555443 347888888888876555444332 234566666655
No 172
>PRK10536 hypothetical protein; Provisional
Probab=97.49 E-value=0.00052 Score=69.30 Aligned_cols=130 Identities=15% Similarity=0.146 Sum_probs=71.6
Q ss_pred CchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEE----EcCC-----CCHHHH
Q 038861 2 GRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTF----VSED-----FDVFRV 72 (1165)
Q Consensus 2 GR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~----~~~~-----~~~~~~ 72 (1165)
+|......+..++... .+|.+.|++|+|||+||.++..+.-..+.|..++... .++. .+..+-
T Consensus 59 p~n~~Q~~~l~al~~~--------~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK 130 (262)
T PRK10536 59 ARNEAQAHYLKAIESK--------QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEK 130 (262)
T ss_pred CCCHHHHHHHHHHhcC--------CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHH
Confidence 4667777778877432 3899999999999999988875322234454333221 1100 012211
Q ss_pred ----HHHHHHhccCCCCCCCCHHHHHHHH-----------HHHhcCceE---EEEEeCCCCCCccchhhhhcccCCCCCC
Q 038861 73 ----TKSILMSISNVTVNDNDLNSLQEKL-----------EKELIKKKF---LLVLDDMWNENYNDWELLNRPFKAGTSG 134 (1165)
Q Consensus 73 ----~~~i~~~l~~~~~~~~~~~~~~~~l-----------~~~l~~~~~---LlvlDdv~~~~~~~~~~l~~~~~~~~~~ 134 (1165)
...+...+..- .+.+.....+ -.+++++.+ +||+|++...+..+...+. ...+.+
T Consensus 131 ~~p~~~pi~D~L~~~----~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~l---tR~g~~ 203 (262)
T PRK10536 131 FAPYFRPVYDVLVRR----LGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFL---TRLGEN 203 (262)
T ss_pred HHHHHHHHHHHHHHH----hChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHH---hhcCCC
Confidence 12222222110 0001111111 134566654 9999999777665555444 345689
Q ss_pred cEEEEecCchHH
Q 038861 135 SKIIVTTRNRVV 146 (1165)
Q Consensus 135 ~~iiiTtR~~~~ 146 (1165)
|++|+|--..++
T Consensus 204 sk~v~~GD~~Qi 215 (262)
T PRK10536 204 VTVIVNGDITQC 215 (262)
T ss_pred CEEEEeCChhhc
Confidence 999999876543
No 173
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.49 E-value=0.0017 Score=72.10 Aligned_cols=175 Identities=14% Similarity=0.115 Sum_probs=91.8
Q ss_pred CchHHHHHHHHHHhcC-------CCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHH
Q 038861 2 GRKKDKDEIVELLLRD-------DSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTK 74 (1165)
Q Consensus 2 GR~~~~~~l~~~l~~~-------~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~ 74 (1165)
|-+..+++|.+.+.-. ...+-..++-|.++|++|+|||++|+++++. ....| +.+.. ..+..
T Consensus 149 Gl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f-----i~i~~----s~l~~ 217 (398)
T PTZ00454 149 GLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF-----IRVVG----SEFVQ 217 (398)
T ss_pred CHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----HHHHH
Confidence 6677777777665310 0012234677999999999999999999864 22222 22211 11111
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCC------c----cc----hhhhhcccCC--CCCCcEEE
Q 038861 75 SILMSISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNEN------Y----ND----WELLNRPFKA--GTSGSKII 138 (1165)
Q Consensus 75 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~------~----~~----~~~l~~~~~~--~~~~~~ii 138 (1165)
.. .+ .....+...+.......+.+|++|+++... . .. +..+...+.. ...+..||
T Consensus 218 k~---~g------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI 288 (398)
T PTZ00454 218 KY---LG------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVI 288 (398)
T ss_pred Hh---cc------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEE
Confidence 11 10 111222223333335678999999985320 0 01 1122222221 12456788
Q ss_pred EecCchHHHHh-h----cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCc
Q 038861 139 VTTRNRVVAER-V----GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLP 201 (1165)
Q Consensus 139 iTtR~~~~~~~-~----~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 201 (1165)
+||...+.... + .-...++++..+.++..++|........ ....- ...++++.+.|.-
T Consensus 289 ~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~-l~~dv----d~~~la~~t~g~s 351 (398)
T PTZ00454 289 MATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMN-LSEEV----DLEDFVSRPEKIS 351 (398)
T ss_pred EecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCC-CCccc----CHHHHHHHcCCCC
Confidence 88876543221 1 2235688999999998888886643222 11111 2445666776653
No 174
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.48 E-value=0.00045 Score=66.03 Aligned_cols=88 Identities=18% Similarity=0.017 Sum_probs=46.1
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCc-
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKK- 104 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~- 104 (1165)
..+.|+|++|+||||+|+.++..... ....++++.............. ...................+.+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP--PGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC--CCCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 47899999999999999999864322 2223445444433222111111 111111111222233333344444333
Q ss_pred eEEEEEeCCCCCC
Q 038861 105 KFLLVLDDMWNEN 117 (1165)
Q Consensus 105 ~~LlvlDdv~~~~ 117 (1165)
..++++|+++...
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 4899999996653
No 175
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.44 E-value=0.0012 Score=63.45 Aligned_cols=136 Identities=13% Similarity=0.098 Sum_probs=76.9
Q ss_pred CchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchh------------------ccCCceEEEEE
Q 038861 2 GRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVR------------------RHFEIKAWTFV 63 (1165)
Q Consensus 2 GR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~------------------~~f~~~~w~~~ 63 (1165)
|-++..+.+...+..+. -...+.++|+.|+||+++|.++++..--. .......|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 56777888888886543 24568999999999999999887531111 11223333322
Q ss_pred cCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHh-----cCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEE
Q 038861 64 SEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKEL-----IKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKII 138 (1165)
Q Consensus 64 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~ii 138 (1165)
.... .....++.. .+.+.+ .+++-++|+|+++.........+...+...+.++++|
T Consensus 76 ~~~~------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 76 DKKK------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp TTSS------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred cccc------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 2110 011222222 222222 2456699999998877777788888777777889999
Q ss_pred EecCchH-HHHhh-cccceeeCCCC
Q 038861 139 VTTRNRV-VAERV-GSVREYPLGEL 161 (1165)
Q Consensus 139 iTtR~~~-~~~~~-~~~~~~~l~~l 161 (1165)
++|++.. +.... ..-..+.+.++
T Consensus 137 L~t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 137 LITNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp EEES-GGGS-HHHHTTSEEEEE---
T ss_pred EEECChHHChHHHHhhceEEecCCC
Confidence 9888764 33222 22245555554
No 176
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.44 E-value=0.00073 Score=73.44 Aligned_cols=154 Identities=19% Similarity=0.169 Sum_probs=88.4
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIK 103 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 103 (1165)
....+.|||..|.|||.|++++.+. .....+....+.+ +.+......+..+.. ...+.+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~----~se~f~~~~v~a~~~---------~~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYL----TSEDFTNDFVKALRD---------NEMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEec----cHHHHHHHHHHHHHh---------hhHHHHHHhh--
Confidence 4567999999999999999999963 4444442222222 234444444444432 1233445544
Q ss_pred ceEEEEEeCCCCCCcc-ch-hhhhcccCCC-CCCcEEEEecCch---------HHHHhhcccceeeCCCCCHHHHHHHHh
Q 038861 104 KKFLLVLDDMWNENYN-DW-ELLNRPFKAG-TSGSKIIVTTRNR---------VVAERVGSVREYPLGELSKEDCLRVLT 171 (1165)
Q Consensus 104 ~~~LlvlDdv~~~~~~-~~-~~l~~~~~~~-~~~~~iiiTtR~~---------~~~~~~~~~~~~~l~~l~~~e~~~lf~ 171 (1165)
.--++++||++-.... .| +.+...+... ..|-.||+|++.. ++...+...-.+++.+.+.+....++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 3348899999542211 11 2222222211 2344899999652 233334444689999999999999999
Q ss_pred hcccCCCCCCCCcchHHHHHHHHHHcC
Q 038861 172 QHSLGATDFNTHQSLKEVREKIAMKCK 198 (1165)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~i~~~~~ 198 (1165)
+++......-+. +++.-|++...
T Consensus 255 kka~~~~~~i~~----ev~~~la~~~~ 277 (408)
T COG0593 255 KKAEDRGIEIPD----EVLEFLAKRLD 277 (408)
T ss_pred HHHHhcCCCCCH----HHHHHHHHHhh
Confidence 876444432222 44554554443
No 177
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.43 E-value=0.0017 Score=70.34 Aligned_cols=175 Identities=13% Similarity=0.093 Sum_probs=98.7
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcch--------hccCCceEEEEEcCCCCHHHHHHHHHH
Q 038861 7 KDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRV--------RRHFEIKAWTFVSEDFDVFRVTKSILM 78 (1165)
Q Consensus 7 ~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~--------~~~f~~~~w~~~~~~~~~~~~~~~i~~ 78 (1165)
-+++...+.++. -.....++|+.|+||+++|.+++...-- ++....+-++..+..+|+..+
T Consensus 11 ~~~l~~~~~~~r-----l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------ 79 (334)
T PRK07993 11 YEQLVGSYQAGR-----GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL------ 79 (334)
T ss_pred HHHHHHHHHcCC-----cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE------
Confidence 345666664432 3457889999999999999888642100 000000001111111111100
Q ss_pred hccCCCC-CCCCHHHHHHHHHHHh-----cCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCch-HHHHhh-
Q 038861 79 SISNVTV-NDNDLNSLQEKLEKEL-----IKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNR-VVAERV- 150 (1165)
Q Consensus 79 ~l~~~~~-~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~-~~~~~~- 150 (1165)
.+... ..-.++++.+ +.+.+ .+++-++|+|+++..+......+...+...++++.+|++|.+. .+....
T Consensus 80 --~p~~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIr 156 (334)
T PRK07993 80 --TPEKGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLR 156 (334)
T ss_pred --ecccccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 00000 1123333333 22222 3556689999997766666677777777666777777777664 344332
Q ss_pred cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHH
Q 038861 151 GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAA 204 (1165)
Q Consensus 151 ~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 204 (1165)
..-..+.+.+++++++.+.+.... + .+ .+.+..+++.++|.|...
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~-~-----~~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 157 SRCRLHYLAPPPEQYALTWLSREV-T-----MS---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred hccccccCCCCCHHHHHHHHHHcc-C-----CC---HHHHHHHHHHcCCCHHHH
Confidence 233578899999999988886541 1 11 144678899999999533
No 178
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.42 E-value=0.00086 Score=64.46 Aligned_cols=41 Identities=20% Similarity=0.266 Sum_probs=31.1
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhC
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
||-|+.++++.-...+ +..+-+.|.||+|+||||-+..+++
T Consensus 30 VGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 30 VGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred hCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHH
Confidence 5777777776655432 3456789999999999999988875
No 179
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.42 E-value=0.0055 Score=65.45 Aligned_cols=175 Identities=11% Similarity=0.094 Sum_probs=99.0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccC--------CceEEEEEcCCCCHHHHHHHHH
Q 038861 6 DKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHF--------EIKAWTFVSEDFDVFRVTKSIL 77 (1165)
Q Consensus 6 ~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f--------~~~~w~~~~~~~~~~~~~~~i~ 77 (1165)
..+.+.+.+..+. -...+.++|+.|+||+++|..++... .+..- ..+-++..+..+|+..
T Consensus 11 ~~~~l~~~~~~~r-----l~hA~L~~G~~G~Gk~~lA~~~a~~l-lC~~~~~~~Cg~C~sC~~~~~g~HPD~~~------ 78 (319)
T PRK06090 11 VWQNWKAGLDAGR-----IPGALLLQSDEGLGVESLVELFSRAL-LCQNYQSEACGFCHSCELMQSGNHPDLHV------ 78 (319)
T ss_pred HHHHHHHHHHcCC-----cceeEeeECCCCCCHHHHHHHHHHHH-cCCCCCCCCCCCCHHHHHHHcCCCCCEEE------
Confidence 3455566664432 24578999999999999999886421 11110 0000011111111100
Q ss_pred HhccCCC-CCCCCHHHHHHHHHHHh-----cCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCch-HHHHhh
Q 038861 78 MSISNVT-VNDNDLNSLQEKLEKEL-----IKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNR-VVAERV 150 (1165)
Q Consensus 78 ~~l~~~~-~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~-~~~~~~ 150 (1165)
+.... ...-.++++. .+.+.+ .+++-++|+|+++.........+...+...++++.+|++|.+. .+....
T Consensus 79 --i~p~~~~~~I~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI 155 (319)
T PRK06090 79 --IKPEKEGKSITVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTI 155 (319)
T ss_pred --EecCcCCCcCCHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHH
Confidence 00000 0112333332 222222 2445688999997776666777777777666777777766654 344332
Q ss_pred -cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHH
Q 038861 151 -GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTL 207 (1165)
Q Consensus 151 -~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 207 (1165)
..-..+.+.+++++++.+.+.... . . .+..+++.++|.|+....+
T Consensus 156 ~SRCq~~~~~~~~~~~~~~~L~~~~---~---~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 156 VSRCQQWVVTPPSTAQAMQWLKGQG---I---T------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred HhcceeEeCCCCCHHHHHHHHHHcC---C---c------hHHHHHHHcCCCHHHHHHH
Confidence 333678999999999999887541 1 0 1356788999999866544
No 180
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0036 Score=67.95 Aligned_cols=149 Identities=19% Similarity=0.224 Sum_probs=85.3
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhc
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELI 102 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 102 (1165)
.+...+.+.|++|+|||+||.+++. ...|+.+--+...+- ++. .+......+.......-+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~m-------------iG~--sEsaKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDM-------------IGL--SESAKCAHIKKIFEDAYK 596 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHc-------------cCc--cHHHHHHHHHHHHHHhhc
Confidence 4567789999999999999999983 466764433221100 110 111122233334445556
Q ss_pred CceEEEEEeCCCCCCccchhhh---------------hcccCCCCCCcEEEEecCchHHHHhhccc----ceeeCCCCCH
Q 038861 103 KKKFLLVLDDMWNENYNDWELL---------------NRPFKAGTSGSKIIVTTRNRVVAERVGSV----REYPLGELSK 163 (1165)
Q Consensus 103 ~~~~LlvlDdv~~~~~~~~~~l---------------~~~~~~~~~~~~iiiTtR~~~~~~~~~~~----~~~~l~~l~~ 163 (1165)
..--+||+||+ +...+|-.+ ....|+.+..--|+-||..+.+.+.++-. ..+.|+.++.
T Consensus 597 S~lsiivvDdi--ErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 597 SPLSIIVVDDI--ERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred CcceEEEEcch--hhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 67789999999 333444322 12222222334455688888888877532 4688998877
Q ss_pred -HHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHc
Q 038861 164 -EDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKC 197 (1165)
Q Consensus 164 -~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~ 197 (1165)
++..+.++..- ...+...+..+++...+|
T Consensus 675 ~~~~~~vl~~~n-----~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 675 GEQLLEVLEELN-----IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred hHHHHHHHHHcc-----CCCcchhHHHHHHHhccc
Confidence 67777776542 112223334555555555
No 181
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.37 E-value=0.00029 Score=66.51 Aligned_cols=106 Identities=12% Similarity=-0.037 Sum_probs=68.5
Q ss_pred CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcC-CcccCCCCCCceee
Q 038861 985 TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKAL-PNCMHNLTSLLHLE 1063 (1165)
Q Consensus 985 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~ 1063 (1165)
.+...+||++|.+... ..|.+++.|.+|.|.+|.++.+-|.-..-+++|+.|.+.+|.+...- -..+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 4556677777766443 34667788888888888877777765556677888888887764321 12356777888888
Q ss_pred eccCCCCcccCC----CCCCCCcceEEEecCCC
Q 038861 1064 IGWCRSLVSFPE----DGFPTNLESLEVHDLKI 1092 (1165)
Q Consensus 1064 l~~n~~~~~~p~----~~~~~~L~~L~l~~n~~ 1092 (1165)
+-+|+....-.- ...+++|++||+..-..
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 877777322111 14567777777765443
No 182
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.36 E-value=0.0025 Score=72.28 Aligned_cols=163 Identities=10% Similarity=0.064 Sum_probs=84.0
Q ss_pred CchHHHHHHHHHHhcCC-------CCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhc---cCCceEEEEEcCCCCHHH
Q 038861 2 GRKKDKDEIVELLLRDD-------SRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRR---HFEIKAWTFVSEDFDVFR 71 (1165)
Q Consensus 2 GR~~~~~~l~~~l~~~~-------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~---~f~~~~w~~~~~~~~~~~ 71 (1165)
|.+++++++.+.+...- ..+-..++-+.++|++|+|||++|+++++...... ......++.+... .
T Consensus 186 Gl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~----e 261 (512)
T TIGR03689 186 GLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP----E 261 (512)
T ss_pred ChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch----h
Confidence 67888888887764210 00122345689999999999999999996432110 1122334443321 1
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHH-hcCceEEEEEeCCCCCC-------ccch-----hhhhcccCCC--CCCcE
Q 038861 72 VTKSILMSISNVTVNDNDLNSLQEKLEKE-LIKKKFLLVLDDMWNEN-------YNDW-----ELLNRPFKAG--TSGSK 136 (1165)
Q Consensus 72 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~-------~~~~-----~~l~~~~~~~--~~~~~ 136 (1165)
+ +....+. .......+....++. -.+++++|++|+++..- ..+. ..+...+... ..+..
T Consensus 262 L----l~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~Vi 335 (512)
T TIGR03689 262 L----LNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVI 335 (512)
T ss_pred h----cccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceE
Confidence 1 1100000 000011122222221 13578999999996421 0111 1222222221 13445
Q ss_pred EEEecCchHHHH-hh----cccceeeCCCCCHHHHHHHHhhcc
Q 038861 137 IIVTTRNRVVAE-RV----GSVREYPLGELSKEDCLRVLTQHS 174 (1165)
Q Consensus 137 iiiTtR~~~~~~-~~----~~~~~~~l~~l~~~e~~~lf~~~~ 174 (1165)
||.||-..+... .+ +-...++++..+.++..++|..+.
T Consensus 336 VI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 336 VIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred EEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 555665543222 11 123468999999999999999875
No 183
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0027 Score=65.90 Aligned_cols=184 Identities=18% Similarity=0.136 Sum_probs=103.1
Q ss_pred CchHHHHHHHHHHhcCC-------CCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHH
Q 038861 2 GRKKDKDEIVELLLRDD-------SRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTK 74 (1165)
Q Consensus 2 GR~~~~~~l~~~l~~~~-------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~ 74 (1165)
|-++++++|.+.+.-.- .-+-++++=|.+||++|.|||-||++|+++ ....| +.+... ++.+
T Consensus 155 GL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----IrvvgS----ElVq 223 (406)
T COG1222 155 GLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVGS----ELVQ 223 (406)
T ss_pred CHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEeccH----HHHH
Confidence 56788888887765211 013456677999999999999999999974 33333 333221 2222
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHh-cCceEEEEEeCCCCCC--------ccc------hhhhhcccCCCC--CCcEE
Q 038861 75 SILMSISNVTVNDNDLNSLQEKLEKEL-IKKKFLLVLDDMWNEN--------YND------WELLNRPFKAGT--SGSKI 137 (1165)
Q Consensus 75 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~--------~~~------~~~l~~~~~~~~--~~~~i 137 (1165)
..+ +. -..+.+.+-+.- .+.+.+|.+|.++... ..+ .-++...+..+. ...+|
T Consensus 224 KYi---GE-------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKV 293 (406)
T COG1222 224 KYI---GE-------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKV 293 (406)
T ss_pred HHh---cc-------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEE
Confidence 211 11 112233333333 3568999999984421 001 122333343333 35688
Q ss_pred EEecCchHHHHh-----hcccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCc----hHHHHHH
Q 038861 138 IVTTRNRVVAER-----VGSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLP----LAAKTLG 208 (1165)
Q Consensus 138 iiTtR~~~~~~~-----~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P----lal~~~~ 208 (1165)
|..|-..++... -+-+..++++.-+.+.-.++|.-++..... .+.-+ .+.+++.|.|.- -|+.+=|
T Consensus 294 I~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l-~~dvd----~e~la~~~~g~sGAdlkaictEA 368 (406)
T COG1222 294 IMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNL-ADDVD----LELLARLTEGFSGADLKAICTEA 368 (406)
T ss_pred EEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccC-ccCcC----HHHHHHhcCCCchHHHHHHHHHH
Confidence 888876554432 123467888888888888888887644332 12222 455666776654 3444445
Q ss_pred hhh
Q 038861 209 GLL 211 (1165)
Q Consensus 209 ~~l 211 (1165)
+++
T Consensus 369 Gm~ 371 (406)
T COG1222 369 GMF 371 (406)
T ss_pred hHH
Confidence 544
No 184
>CHL00176 ftsH cell division protein; Validated
Probab=97.34 E-value=0.0023 Score=75.39 Aligned_cols=150 Identities=17% Similarity=0.204 Sum_probs=82.8
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCc
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKK 104 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 104 (1165)
.+-|.++|++|+|||++|++++... .. -|+.++. .++... .. ..........+.+..+..
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~--~~-----p~i~is~----s~f~~~----~~-----g~~~~~vr~lF~~A~~~~ 275 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEA--EV-----PFFSISG----SEFVEM----FV-----GVGAARVRDLFKKAKENS 275 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh--CC-----CeeeccH----HHHHHH----hh-----hhhHHHHHHHHHHHhcCC
Confidence 4568999999999999999998532 11 1232221 111111 00 011223333444555677
Q ss_pred eEEEEEeCCCCCC----------ccc----hhhhhcccCC--CCCCcEEEEecCchHHHHh-h----cccceeeCCCCCH
Q 038861 105 KFLLVLDDMWNEN----------YND----WELLNRPFKA--GTSGSKIIVTTRNRVVAER-V----GSVREYPLGELSK 163 (1165)
Q Consensus 105 ~~LlvlDdv~~~~----------~~~----~~~l~~~~~~--~~~~~~iiiTtR~~~~~~~-~----~~~~~~~l~~l~~ 163 (1165)
+++|++|+++... ... +..+...+.. ...+..||.||...+.... + .-...+.++..+.
T Consensus 276 P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~ 355 (638)
T CHL00176 276 PCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDR 355 (638)
T ss_pred CcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCH
Confidence 8999999995421 011 1222222211 2345567767766443221 1 1235688888999
Q ss_pred HHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCC
Q 038861 164 EDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKG 199 (1165)
Q Consensus 164 ~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 199 (1165)
++-.++++.++.... .........+++.+.|
T Consensus 356 ~~R~~IL~~~l~~~~-----~~~d~~l~~lA~~t~G 386 (638)
T CHL00176 356 EGRLDILKVHARNKK-----LSPDVSLELIARRTPG 386 (638)
T ss_pred HHHHHHHHHHHhhcc-----cchhHHHHHHHhcCCC
Confidence 999999988764321 1112445678888877
No 185
>PRK08116 hypothetical protein; Validated
Probab=97.31 E-value=0.00073 Score=70.95 Aligned_cols=104 Identities=21% Similarity=0.262 Sum_probs=57.5
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCce
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKKK 105 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 105 (1165)
..+.++|.+|+|||.||.++++. ...+...+++++ ..+++..+........ ..+. ..+.+.+..-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~----~~~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN------FPQLLNRIKSTYKSSG--KEDE----NEIIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhccc--cccH----HHHHHHhcCCC
Confidence 35899999999999999999964 332333455554 3444555544432211 1111 12233344334
Q ss_pred EEEEEeCCCCCCccchhh--hhcccCCC-CCCcEEEEecCch
Q 038861 106 FLLVLDDMWNENYNDWEL--LNRPFKAG-TSGSKIIVTTRNR 144 (1165)
Q Consensus 106 ~LlvlDdv~~~~~~~~~~--l~~~~~~~-~~~~~iiiTtR~~ 144 (1165)
||||||+......+|.. +...+... ..+..+||||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 89999995544444532 22222111 2455688888753
No 186
>PRK08181 transposase; Validated
Probab=97.26 E-value=0.00082 Score=69.98 Aligned_cols=100 Identities=21% Similarity=0.166 Sum_probs=53.5
Q ss_pred EEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCceE
Q 038861 27 VISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKKKF 106 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 106 (1165)
-+.++|++|+|||.||.++.+. .......++|+. ..++...+..... ....+.... .+. +.-
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~------~~~L~~~l~~a~~-----~~~~~~~l~----~l~-~~d 169 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTR------TTDLVQKLQVARR-----ELQLESAIA----KLD-KFD 169 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeee------HHHHHHHHHHHHh-----CCcHHHHHH----HHh-cCC
Confidence 4899999999999999999853 333333455554 3444444433211 112222222 222 335
Q ss_pred EEEEeCCCCCCccchh--hhhcccCCCCCCcEEEEecCch
Q 038861 107 LLVLDDMWNENYNDWE--LLNRPFKAGTSGSKIIVTTRNR 144 (1165)
Q Consensus 107 LlvlDdv~~~~~~~~~--~l~~~~~~~~~~~~iiiTtR~~ 144 (1165)
|||+||+.-....++. .+...+.....+..+||||...
T Consensus 170 LLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 170 LLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 9999999554333332 2222222211123588888754
No 187
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.25 E-value=0.0085 Score=64.96 Aligned_cols=202 Identities=15% Similarity=0.161 Sum_probs=119.3
Q ss_pred chHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHH-HHHhCCcchhccCCceEEEEEcCC---CCHHHHHHHHHH
Q 038861 3 RKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLA-QLVYKDDRVRRHFEIKAWTFVSED---FDVFRVTKSILM 78 (1165)
Q Consensus 3 R~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa-~~~~~~~~~~~~f~~~~w~~~~~~---~~~~~~~~~i~~ 78 (1165)
|.+.+++|..||.+... ..|.|.||-|.||+.|+ .++..+.+ .+..+++.+- .+-..+...++.
T Consensus 1 R~e~~~~L~~wL~e~~~------TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPN------TFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCCC------eEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHH
Confidence 78889999999976543 68999999999999999 77765422 2455554432 223344444444
Q ss_pred hccCC-----------------------CCC-CCCHH-HHHHH-------HHH-------------------Hhc---Cc
Q 038861 79 SISNV-----------------------TVN-DNDLN-SLQEK-------LEK-------------------ELI---KK 104 (1165)
Q Consensus 79 ~l~~~-----------------------~~~-~~~~~-~~~~~-------l~~-------------------~l~---~~ 104 (1165)
++|-. ... ..+.+ ++... +++ ++. .+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 44311 110 01112 22111 111 010 12
Q ss_pred eEEEEEeCCCCCCcc---chhhhh---cccCCCCCCcEEEEecCchHHHH----hh--cccceeeCCCCCHHHHHHHHhh
Q 038861 105 KFLLVLDDMWNENYN---DWELLN---RPFKAGTSGSKIIVTTRNRVVAE----RV--GSVREYPLGELSKEDCLRVLTQ 172 (1165)
Q Consensus 105 ~~LlvlDdv~~~~~~---~~~~l~---~~~~~~~~~~~iiiTtR~~~~~~----~~--~~~~~~~l~~l~~~e~~~lf~~ 172 (1165)
+-+||+||+...... -|+.+. ..+.. ..-.+||++|-+..... .+ ...+.+.+...+++.|.++...
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 579999999442211 122221 11221 24468888887754333 33 2446788999999999999998
Q ss_pred cccCCCCC------------CC----CcchHHHHHHHHHHcCCCchHHHHHHhhhcCCCCh
Q 038861 173 HSLGATDF------------NT----HQSLKEVREKIAMKCKGLPLAAKTLGGLLRGKHDP 217 (1165)
Q Consensus 173 ~~~~~~~~------------~~----~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~ 217 (1165)
+....... .+ .....+.....++..||==.-+..+++.++....+
T Consensus 228 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 228 QLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred HhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 86443110 00 01234555678888999999999999999887553
No 188
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.24 E-value=0.00031 Score=49.61 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=19.2
Q ss_pred CcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCC
Q 038861 1034 KLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRS 1069 (1165)
Q Consensus 1034 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 1069 (1165)
+|++|++++|.+.. +|..+.++++|+.|++++|++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCC
Confidence 55666666665543 344456666666666666655
No 189
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.19 E-value=0.014 Score=66.32 Aligned_cols=201 Identities=17% Similarity=0.121 Sum_probs=117.2
Q ss_pred CchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcc---hhccCC--ceEEEEEcCCCCHHHHHHHH
Q 038861 2 GRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDR---VRRHFE--IKAWTFVSEDFDVFRVTKSI 76 (1165)
Q Consensus 2 GR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~---~~~~f~--~~~w~~~~~~~~~~~~~~~i 76 (1165)
+||.|..+|..++...=. .++....+.|.|.+|+|||..+..|.+... .++.-+ ..+.++...-..+.+++..|
T Consensus 400 cRe~E~~~I~~f~~~~i~-~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I 478 (767)
T KOG1514|consen 400 CRENEFSEIEDFLRSFIS-DQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKI 478 (767)
T ss_pred chhHHHHHHHHHHHhhcC-CCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHH
Confidence 699999999988865432 123456899999999999999999986432 222222 23445555667899999999
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHHh-----cCceEEEEEeCCCCCCccchhhhhcccCC-CCCCcEEEEecC-c-hHHHH
Q 038861 77 LMSISNVTVNDNDLNSLQEKLEKEL-----IKKKFLLVLDDMWNENYNDWELLNRPFKA-GTSGSKIIVTTR-N-RVVAE 148 (1165)
Q Consensus 77 ~~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~~~~-~~~~~~iiiTtR-~-~~~~~ 148 (1165)
..++.+... ......+.+..+. +.+..++++|+++.--...-+.+...+.| ..++++++|.+= + .+...
T Consensus 479 ~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPE 555 (767)
T KOG1514|consen 479 WEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPE 555 (767)
T ss_pred HHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCHH
Confidence 999976543 3344444455444 24568999998843211112233333333 345776655432 2 12111
Q ss_pred h-hc-------ccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHH
Q 038861 149 R-VG-------SVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTL 207 (1165)
Q Consensus 149 ~-~~-------~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 207 (1165)
. +. +...+...+.+.++-.++...+..+.. .......+-++++|+.-.|..-.|+.+.
T Consensus 556 r~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~-~f~~~aielvarkVAavSGDaRraldic 621 (767)
T KOG1514|consen 556 RLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLD-AFENKAIELVARKVAAVSGDARRALDIC 621 (767)
T ss_pred HHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchh-hcchhHHHHHHHHHHhccccHHHHHHHH
Confidence 1 11 224566777787777777776654432 2222333344555555555555555544
No 190
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.19 E-value=0.0045 Score=72.21 Aligned_cols=158 Identities=15% Similarity=0.134 Sum_probs=82.8
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCc
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKK 104 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 104 (1165)
.+-+.++|++|+|||++|++++... ... ++.++ ...+..... ......+...+.......
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~----~~~~~~~~~---------g~~~~~l~~~f~~a~~~~ 147 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSIS----GSDFVEMFV---------GVGASRVRDLFEQAKKNA 147 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeecc----HHHHHHHHh---------cccHHHHHHHHHHHHhcC
Confidence 4558999999999999999998532 111 22222 111111110 112223333444444567
Q ss_pred eEEEEEeCCCCCCc----------cchh----hhhcccCC--CCCCcEEEEecCchHHH-Hhh----cccceeeCCCCCH
Q 038861 105 KFLLVLDDMWNENY----------NDWE----LLNRPFKA--GTSGSKIIVTTRNRVVA-ERV----GSVREYPLGELSK 163 (1165)
Q Consensus 105 ~~LlvlDdv~~~~~----------~~~~----~l~~~~~~--~~~~~~iiiTtR~~~~~-~~~----~~~~~~~l~~l~~ 163 (1165)
+.+|++|+++.... ..+. .+...+.. ...+..||.||...+.. ..+ .-...++++..+.
T Consensus 148 p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~ 227 (495)
T TIGR01241 148 PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDI 227 (495)
T ss_pred CCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCH
Confidence 78999999954210 0111 12111111 12345566666554321 111 2235788999999
Q ss_pred HHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCC-chHHHHH
Q 038861 164 EDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGL-PLAAKTL 207 (1165)
Q Consensus 164 ~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~ 207 (1165)
++-.++|......... .. ......+++.+.|. +-.|..+
T Consensus 228 ~~R~~il~~~l~~~~~-~~----~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 228 KGREEILKVHAKNKKL-AP----DVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred HHHHHHHHHHHhcCCC-Cc----chhHHHHHHhCCCCCHHHHHHH
Confidence 8888888876533211 11 12345788888874 4444443
No 191
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.11 E-value=0.0067 Score=67.86 Aligned_cols=147 Identities=21% Similarity=0.216 Sum_probs=85.4
Q ss_pred EEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCceE
Q 038861 27 VISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKKKF 106 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 106 (1165)
++.|.|+-++||||+++.+.... ... .+++...+......-..+ ....+.+.-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~--~~~---~iy~~~~d~~~~~~~l~d-----------------~~~~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGL--LEE---IIYINFDDLRLDRIELLD-----------------LLRAYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhC--Ccc---eEEEEecchhcchhhHHH-----------------HHHHHHHhhccCCc
Confidence 89999999999999997666431 111 455543332111111111 11111111112678
Q ss_pred EEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCchHHH-----Hhh-cccceeeCCCCCHHHHHHHHhhcccCCCCC
Q 038861 107 LLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRVVA-----ERV-GSVREYPLGELSKEDCLRVLTQHSLGATDF 180 (1165)
Q Consensus 107 LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~~~-----~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~ 180 (1165)
.|+||.|+.. .+|......+.+.++. +|+||+-+.... ..+ +....+++.||+..|-..+-...+
T Consensus 97 yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~------ 167 (398)
T COG1373 97 YIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI------ 167 (398)
T ss_pred eEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc------
Confidence 9999999554 6788877777776666 888888765322 222 344678999999988665432000
Q ss_pred CCCcchHHHHHHHHHHcCCCchHHHH
Q 038861 181 NTHQSLKEVREKIAMKCKGLPLAAKT 206 (1165)
Q Consensus 181 ~~~~~~~~~~~~i~~~~~g~Plal~~ 206 (1165)
... .. +..-+-.-..||.|-++..
T Consensus 168 ~~~-~~-~~~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 168 EPS-KL-ELLFEKYLETGGFPESVKA 191 (398)
T ss_pred chh-HH-HHHHHHHHHhCCCcHHHhC
Confidence 011 11 1133344467999988875
No 192
>PRK12377 putative replication protein; Provisional
Probab=97.07 E-value=0.00084 Score=68.94 Aligned_cols=101 Identities=24% Similarity=0.162 Sum_probs=54.0
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCce
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKKK 105 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 105 (1165)
..+.++|++|+|||+||.++++. .......++++++. ++...+-..... ..... .+.+.+ .+.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~----~~l~~l-~~~ 164 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDN----GQSGE----KFLQEL-CKV 164 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhc----cchHH----HHHHHh-cCC
Confidence 46899999999999999999964 33334445665542 344444332211 11111 122222 345
Q ss_pred EEEEEeCCCCCCccchh--hhhcccCCC-CCCcEEEEecCc
Q 038861 106 FLLVLDDMWNENYNDWE--LLNRPFKAG-TSGSKIIVTTRN 143 (1165)
Q Consensus 106 ~LlvlDdv~~~~~~~~~--~l~~~~~~~-~~~~~iiiTtR~ 143 (1165)
-|||+||+.-.....|. .+...+... ...--+||||--
T Consensus 165 dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 165 DLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 69999999554434443 222222221 122336777753
No 193
>PRK04296 thymidine kinase; Provisional
Probab=97.07 E-value=0.0011 Score=65.76 Aligned_cols=113 Identities=12% Similarity=-0.058 Sum_probs=62.1
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCC--CCCHHHHHHHHHHHhcC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVN--DNDLNSLQEKLEKELIK 103 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~ 103 (1165)
.++.|+|+.|.||||+|..++.. ...+...++.+. ...+.+.....++..++..... .....+....+++ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 47899999999999999888743 333333344342 1112222233344444422111 1233444445544 334
Q ss_pred ceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCchH
Q 038861 104 KKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRV 145 (1165)
Q Consensus 104 ~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~ 145 (1165)
+.-+||+|.+.--+.++...+...+ ...|..||+|.+..+
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 5568999999543222233333332 235788999998754
No 194
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.07 E-value=0.0073 Score=59.41 Aligned_cols=175 Identities=17% Similarity=0.151 Sum_probs=92.8
Q ss_pred CCchHHHH---HHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHH
Q 038861 1 YGRKKDKD---EIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSIL 77 (1165)
Q Consensus 1 vGR~~~~~---~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~ 77 (1165)
||.|+.+. -|++.|.....-++..++-|..+|++|.|||-+|+++++...+ - ++.+.. .+ -|.
T Consensus 124 iGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv--p-----~l~vka----t~---liG 189 (368)
T COG1223 124 IGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV--P-----LLLVKA----TE---LIG 189 (368)
T ss_pred hchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC--c-----eEEech----HH---HHH
Confidence 34444433 3567776555446667889999999999999999999975332 1 122211 11 111
Q ss_pred HhccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCc------------cchhhhhcccCC--CCCCcEEEEecCc
Q 038861 78 MSISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENY------------NDWELLNRPFKA--GTSGSKIIVTTRN 143 (1165)
Q Consensus 78 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~------------~~~~~l~~~~~~--~~~~~~iiiTtR~ 143 (1165)
+..+ +...++.+...+.-+.-++++.+|.++.... +....+...+.. .+.|...|-.|-.
T Consensus 190 ehVG------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~ 263 (368)
T COG1223 190 EHVG------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNR 263 (368)
T ss_pred HHhh------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCC
Confidence 1111 1111222222223345689999998843211 111222222222 2346656666655
Q ss_pred hHHHHhh-c--ccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCC
Q 038861 144 RVVAERV-G--SVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGL 200 (1165)
Q Consensus 144 ~~~~~~~-~--~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 200 (1165)
.++.... . -...++..--+++|-.+++...+..-.-... ...+.++++++|.
T Consensus 264 p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~-----~~~~~~~~~t~g~ 318 (368)
T COG1223 264 PELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD-----ADLRYLAAKTKGM 318 (368)
T ss_pred hhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc-----cCHHHHHHHhCCC
Confidence 5444321 1 1245666777888888888887633222111 2256677777774
No 195
>PRK08118 topology modulation protein; Reviewed
Probab=97.07 E-value=0.00095 Score=64.60 Aligned_cols=34 Identities=35% Similarity=0.619 Sum_probs=26.4
Q ss_pred EEEEEccCCchHHHHHHHHhCCcchh-ccCCceEE
Q 038861 27 VISIIGMGGVGKTTLAQLVYKDDRVR-RHFEIKAW 60 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~w 60 (1165)
.|.|.|++|+||||+|+++++..... -+|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999654333 45666665
No 196
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.07 E-value=0.0017 Score=69.41 Aligned_cols=101 Identities=17% Similarity=0.211 Sum_probs=58.1
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCc
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKK 104 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 104 (1165)
.+-+.|+|..|+|||.||.++++. ....-..+.++.+ ..++..+...... .+..+ .+. .++ +
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~------~~l~~~lk~~~~~-----~~~~~---~l~-~l~-~ 217 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHF------PEFIRELKNSISD-----GSVKE---KID-AVK-E 217 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEH------HHHHHHHHHHHhc-----CcHHH---HHH-Hhc-C
Confidence 356899999999999999999964 3333334455543 2444454443321 12222 222 222 3
Q ss_pred eEEEEEeCCCCCCccchhh--hhccc-CCC-CCCcEEEEecCc
Q 038861 105 KFLLVLDDMWNENYNDWEL--LNRPF-KAG-TSGSKIIVTTRN 143 (1165)
Q Consensus 105 ~~LlvlDdv~~~~~~~~~~--l~~~~-~~~-~~~~~iiiTtR~ 143 (1165)
--||||||+.-....+|.. +...+ ... ..+-.+|+||--
T Consensus 218 ~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 218 APVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred CCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 4589999997666666743 33322 222 234567777763
No 197
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.05 E-value=0.0012 Score=64.92 Aligned_cols=131 Identities=17% Similarity=0.181 Sum_probs=62.8
Q ss_pred chHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCC--CC----HHHH----
Q 038861 3 RKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSED--FD----VFRV---- 72 (1165)
Q Consensus 3 R~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~--~~----~~~~---- 72 (1165)
|..+.+..++.+.. ..+|.+.|++|.|||.||.+.+.+.-..+.|+..+++.-.-. .+ +-+.
T Consensus 5 ~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~ 76 (205)
T PF02562_consen 5 KNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKM 76 (205)
T ss_dssp -SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS--------
T ss_pred CCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHH
Confidence 44566666777763 248999999999999999887755444577887776542111 10 0010
Q ss_pred ---HHHHHHhccCCCCCCCCHHHHHHHH------HHHhcCc---eEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEe
Q 038861 73 ---TKSILMSISNVTVNDNDLNSLQEKL------EKELIKK---KFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVT 140 (1165)
Q Consensus 73 ---~~~i~~~l~~~~~~~~~~~~~~~~l------~~~l~~~---~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiT 140 (1165)
...+...+..-. .....+...+.- -.+++++ ...+|+|++.+.+..++..+.. ..+.+|+||++
T Consensus 77 ~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilT---R~g~~skii~~ 152 (205)
T PF02562_consen 77 EPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILT---RIGEGSKIIIT 152 (205)
T ss_dssp -TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHT---TB-TT-EEEEE
T ss_pred HHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHc---ccCCCcEEEEe
Confidence 111111111100 111222221100 0223444 4699999998877777766644 45679999999
Q ss_pred cCchH
Q 038861 141 TRNRV 145 (1165)
Q Consensus 141 tR~~~ 145 (1165)
--..+
T Consensus 153 GD~~Q 157 (205)
T PF02562_consen 153 GDPSQ 157 (205)
T ss_dssp E----
T ss_pred cCcee
Confidence 87654
No 198
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.05 E-value=0.0059 Score=74.72 Aligned_cols=118 Identities=17% Similarity=0.206 Sum_probs=64.4
Q ss_pred CCchHHHHHHHHHHhcCCCC---CCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSR---ADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSIL 77 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~---~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~ 77 (1165)
+|.++.++.+...+.....+ .+....++.++|++|+|||++|+.++.. . +...+.++.+...+... +.
T Consensus 457 ~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~~----~~ 527 (731)
T TIGR02639 457 FGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKHT----VS 527 (731)
T ss_pred eCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhccc----HH
Confidence 57788888888887642210 1123456889999999999999999853 2 22344555444222111 11
Q ss_pred HhccCCCCCCCCHHHHHHHHHHHhc-CceEEEEEeCCCCCCccchhhhhcccC
Q 038861 78 MSISNVTVNDNDLNSLQEKLEKELI-KKKFLLVLDDMWNENYNDWELLNRPFK 129 (1165)
Q Consensus 78 ~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~LlvlDdv~~~~~~~~~~l~~~~~ 129 (1165)
..++.+. .....++ ...+.+.++ ...-+++||+++......+..+...+.
T Consensus 528 ~lig~~~-gyvg~~~-~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld 578 (731)
T TIGR02639 528 RLIGAPP-GYVGFEQ-GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMD 578 (731)
T ss_pred HHhcCCC-CCcccch-hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhc
Confidence 1122111 1111111 112233333 334699999998776665665555443
No 199
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.05 E-value=0.0019 Score=65.19 Aligned_cols=35 Identities=31% Similarity=0.377 Sum_probs=28.0
Q ss_pred EEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEE
Q 038861 27 VISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFV 63 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~ 63 (1165)
.++|.|..|.||||++..+.. .....|..+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 478999999999999999984 46678876666644
No 200
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.04 E-value=0.0004 Score=67.78 Aligned_cols=78 Identities=26% Similarity=0.336 Sum_probs=42.1
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCce
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKKK 105 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 105 (1165)
.-+.++|++|+|||.||.++.+. ....-..+.|+.. .+++..+-. .. ........ + +.+.. -
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~--~~~~g~~v~f~~~------~~L~~~l~~----~~-~~~~~~~~---~-~~l~~-~ 109 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANE--AIRKGYSVLFITA------SDLLDELKQ----SR-SDGSYEEL---L-KRLKR-V 109 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEH------HHHHHHHHC----CH-CCTTHCHH---H-HHHHT-S
T ss_pred eEEEEEhhHhHHHHHHHHHHHHH--hccCCcceeEeec------Cceeccccc----cc-cccchhhh---c-Ccccc-c
Confidence 46899999999999999999853 3333334566653 344444332 21 11222222 2 22332 3
Q ss_pred EEEEEeCCCCCCccch
Q 038861 106 FLLVLDDMWNENYNDW 121 (1165)
Q Consensus 106 ~LlvlDdv~~~~~~~~ 121 (1165)
=|||+||+.-....+|
T Consensus 110 dlLilDDlG~~~~~~~ 125 (178)
T PF01695_consen 110 DLLILDDLGYEPLSEW 125 (178)
T ss_dssp SCEEEETCTSS---HH
T ss_pred cEecccccceeeeccc
Confidence 4788999966544444
No 201
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.04 E-value=0.0024 Score=65.49 Aligned_cols=81 Identities=20% Similarity=0.233 Sum_probs=46.9
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCce
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKKK 105 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 105 (1165)
..+.++|.+|+|||+||.++++. ....-..+++++ ..++...+-..... .....+ .+.+.+. +.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it------~~~l~~~l~~~~~~---~~~~~~----~~l~~l~-~~ 163 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIIT------VADIMSAMKDTFSN---SETSEE----QLLNDLS-NV 163 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE------HHHHHHHHHHHHhh---ccccHH----HHHHHhc-cC
Confidence 46899999999999999999864 323333455553 34444444333211 111122 2333344 34
Q ss_pred EEEEEeCCCCCCccchh
Q 038861 106 FLLVLDDMWNENYNDWE 122 (1165)
Q Consensus 106 ~LlvlDdv~~~~~~~~~ 122 (1165)
-+||+||+.-....+|+
T Consensus 164 dlLvIDDig~~~~s~~~ 180 (244)
T PRK07952 164 DLLVIDEIGVQTESRYE 180 (244)
T ss_pred CEEEEeCCCCCCCCHHH
Confidence 48889999665555554
No 202
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.04 E-value=0.0031 Score=67.67 Aligned_cols=87 Identities=21% Similarity=0.179 Sum_probs=55.5
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCc-eEEEEEcC-CCCHHHHHHHHHHhccCCCCCCCCHHH-----HHHHHH
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEI-KAWTFVSE-DFDVFRVTKSILMSISNVTVNDNDLNS-----LQEKLE 98 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~-~~w~~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~-----~~~~l~ 98 (1165)
..+.|+|.+|+|||||++.+++... ..+-+. ++|+.+.. ...+.++.+.+...+.....+...... ....+.
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~-~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~A 212 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVA-ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERA 212 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHH
Confidence 3579999999999999999885321 122233 35666665 457888888888877654332222211 111222
Q ss_pred HHh--cCceEEEEEeCC
Q 038861 99 KEL--IKKKFLLVLDDM 113 (1165)
Q Consensus 99 ~~l--~~~~~LlvlDdv 113 (1165)
+++ ++++++||+|++
T Consensus 213 e~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 213 KRLVEQGKDVVILLDSL 229 (380)
T ss_pred HHHHHcCCCEEEEEeCc
Confidence 222 588999999999
No 203
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.03 E-value=0.003 Score=78.49 Aligned_cols=135 Identities=16% Similarity=0.195 Sum_probs=72.8
Q ss_pred CCchHHHHHHHHHHhcCCCC---CCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSR---ADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSIL 77 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~---~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~ 77 (1165)
+|.+..++.+...+.....+ .+.+..++.+.|++|+|||++|+.++.. ....-...+.++++.......+ .
T Consensus 568 ~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~~----~ 641 (852)
T TIGR03346 568 VGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHSV----A 641 (852)
T ss_pred CCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccchH----H
Confidence 68889999999888753211 1123457889999999999999999853 2222223334444432221111 1
Q ss_pred HhccCCCCCCCCHHHHHHHHHHHhc-CceEEEEEeCCCCCCccchhhhhcccCCC-----------CCCcEEEEecCc
Q 038861 78 MSISNVTVNDNDLNSLQEKLEKELI-KKKFLLVLDDMWNENYNDWELLNRPFKAG-----------TSGSKIIVTTRN 143 (1165)
Q Consensus 78 ~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~LlvlDdv~~~~~~~~~~l~~~~~~~-----------~~~~~iiiTtR~ 143 (1165)
+-++.+ ....+.++ ...+.+.++ ....+|+||++.......+..+...+..+ -.++.||+||.-
T Consensus 642 ~l~g~~-~g~~g~~~-~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 642 RLIGAP-PGYVGYEE-GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred HhcCCC-CCccCccc-ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 112211 11111111 112222232 23459999999877766666665554332 123447777764
No 204
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.01 E-value=0.0074 Score=64.93 Aligned_cols=91 Identities=14% Similarity=0.119 Sum_probs=51.6
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCC-CHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHh
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDF-DVFRVTKSILMSISNVTVNDNDLNSLQEKLEKEL 101 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 101 (1165)
.++++|+++|++|+||||++..++.. ....-..+..++..... ...+-+...+..++.+.....+...+.+.+...-
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHH--HHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 34589999999999999999999853 32222344455543321 2222333444444433333345555555554432
Q ss_pred c-CceEEEEEeCCCC
Q 038861 102 I-KKKFLLVLDDMWN 115 (1165)
Q Consensus 102 ~-~~~~LlvlDdv~~ 115 (1165)
. .+.=++++|-...
T Consensus 317 ~~~~~DvVLIDTaGR 331 (436)
T PRK11889 317 EEARVDYILIDTAGK 331 (436)
T ss_pred hccCCCEEEEeCccc
Confidence 2 1345788898744
No 205
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.00 E-value=0.0035 Score=58.93 Aligned_cols=117 Identities=17% Similarity=0.100 Sum_probs=64.5
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCC---CCHHHHHHHHHHhc-----cCCC-CCCCCHHH----
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSED---FDVFRVTKSILMSI-----SNVT-VNDNDLNS---- 92 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~---~~~~~~~~~i~~~l-----~~~~-~~~~~~~~---- 92 (1165)
.+|-|++..|.||||+|...+ .+...+-..+.++.+-.. ......++.+ ..+ +... ....+.++
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~--~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLA--LRALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHH--HHHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 378899999999999997776 344444445555544443 2333333332 111 0000 00111111
Q ss_pred ---HHHHHHHHhc-CceEEEEEeCCCCC---CccchhhhhcccCCCCCCcEEEEecCchH
Q 038861 93 ---LQEKLEKELI-KKKFLLVLDDMWNE---NYNDWELLNRPFKAGTSGSKIIVTTRNRV 145 (1165)
Q Consensus 93 ---~~~~l~~~l~-~~~~LlvlDdv~~~---~~~~~~~l~~~~~~~~~~~~iiiTtR~~~ 145 (1165)
.....++.+. ++-=|+|||++--. ...+.+.+...+...+.+..+|+|.|...
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1122333343 34459999998332 22344566666666777889999999853
No 206
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.97 E-value=0.0027 Score=78.18 Aligned_cols=134 Identities=18% Similarity=0.177 Sum_probs=70.8
Q ss_pred CCchHHHHHHHHHHhcCCC---CCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDS---RADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSIL 77 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~---~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~ 77 (1165)
+|.++.++.+.+.+..... ..+.+..++.++|++|+|||.+|++++.. .-+.....+-++++...+. ..+.
T Consensus 569 ~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~----~~~~ 642 (852)
T TIGR03345 569 IGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEA----HTVS 642 (852)
T ss_pred cChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhh----hhhc
Confidence 5888899999888864211 11234557899999999999999988743 2122222222232221111 1111
Q ss_pred HhccCCCC-CCC-CHHHHHHHHHHHhcCceEEEEEeCCCCCCccchhhhhcccCCCC-----------CCcEEEEecCc
Q 038861 78 MSISNVTV-NDN-DLNSLQEKLEKELIKKKFLLVLDDMWNENYNDWELLNRPFKAGT-----------SGSKIIVTTRN 143 (1165)
Q Consensus 78 ~~l~~~~~-~~~-~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~-----------~~~~iiiTtR~ 143 (1165)
+-++.+.. ... ....+...++ +...-+|+||+++..+...+..+...+..+. ..+.||+||--
T Consensus 643 ~l~g~~~gyvg~~~~g~L~~~v~---~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 643 RLKGSPPGYVGYGEGGVLTEAVR---RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNA 718 (852)
T ss_pred cccCCCCCcccccccchHHHHHH---hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCC
Confidence 11221111 111 1112223332 2455799999997766665665554443331 45666667653
No 207
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.97 E-value=0.0013 Score=70.97 Aligned_cols=70 Identities=13% Similarity=0.130 Sum_probs=43.5
Q ss_pred ceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCchH-HHHhh-cccceeeCCCCCHHHHHHHHhhc
Q 038861 104 KKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRV-VAERV-GSVREYPLGELSKEDCLRVLTQH 173 (1165)
Q Consensus 104 ~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~-~~~~~-~~~~~~~l~~l~~~e~~~lf~~~ 173 (1165)
++-++|+|+++.-+......+...+.....++.+|++|.+.. +.... ..-..+.+.+++.+++.+.+...
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 344556788866555555555554444345566777776643 33322 22357889999999999888754
No 208
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.95 E-value=0.019 Score=63.57 Aligned_cols=43 Identities=26% Similarity=0.423 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCC
Q 038861 3 RKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 3 R~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
|+.-.+.+.+.+.... .....+|+|.|.=|+||||+.+.+...
T Consensus 1 ~~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred ChHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4556677788776542 146789999999999999999998754
No 209
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.95 E-value=0.00016 Score=85.88 Aligned_cols=148 Identities=18% Similarity=0.131 Sum_probs=86.4
Q ss_pred CCccEEEEcCCCCchh-hhhhccc--Cccceeeeeccccccc-CCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCe
Q 038861 962 QALKYLEVSYCSKLES-LAERLDN--TSLEVIAISYLENLKS-LPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTK 1037 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~-~~~~~~~--~~L~~L~L~~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 1037 (1165)
.+|++|++++...... -+..... |+|+.|.+++-.+... ...-..++|+|..||++++++... .+++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 4577777777543211 1111222 7777777777444332 223355677888888887775443 46677777777
Q ss_pred EEeecCCCCCc-CCcccCCCCCCceeeeccCCCCccc--C-----CCCCCCCcceEEEecCCCCCcccccccccCCCCcE
Q 038861 1038 LTIGYCENLKA-LPNCMHNLTSLLHLEIGWCRSLVSF--P-----EDGFPTNLESLEVHDLKISKPLFEWGLNKFSSLRE 1109 (1165)
Q Consensus 1038 L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~--p-----~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 1109 (1165)
|.+.+-++... .-..+-+|++|+.||+|........ . ....+|+|+.||.|+..+.+.+.+..+..-|+|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 77777655431 1123556778888888765542211 0 11446777777777777776555554555566655
Q ss_pred EE
Q 038861 1110 LQ 1111 (1165)
Q Consensus 1110 L~ 1111 (1165)
+.
T Consensus 280 i~ 281 (699)
T KOG3665|consen 280 IA 281 (699)
T ss_pred hh
Confidence 54
No 210
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.93 E-value=0.0061 Score=65.82 Aligned_cols=92 Identities=15% Similarity=0.217 Sum_probs=62.4
Q ss_pred CceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCc-hHHHHhh-cccceeeCCCCCHHHHHHHHhhcccCCCCC
Q 038861 103 KKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRN-RVVAERV-GSVREYPLGELSKEDCLRVLTQHSLGATDF 180 (1165)
Q Consensus 103 ~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~-~~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~ 180 (1165)
+++-++|+|+++..+......+...+...++++.+|++|.+ ..+.... ..-..+.+.++++++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~--~--- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG--V--- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC--C---
Confidence 44568889999887777777777777776677766666555 3444332 233678999999999999887652 1
Q ss_pred CCCcchHHHHHHHHHHcCCCchHHHH
Q 038861 181 NTHQSLKEVREKIAMKCKGLPLAAKT 206 (1165)
Q Consensus 181 ~~~~~~~~~~~~i~~~~~g~Plal~~ 206 (1165)
+ + ...++..++|.|.....
T Consensus 206 -~-~-----~~~~l~~~~Gsp~~Al~ 224 (342)
T PRK06964 206 -A-D-----ADALLAEAGGAPLAALA 224 (342)
T ss_pred -C-h-----HHHHHHHcCCCHHHHHH
Confidence 1 1 22357788999964443
No 211
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.93 E-value=0.0053 Score=75.55 Aligned_cols=48 Identities=35% Similarity=0.517 Sum_probs=34.1
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCC
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
+|.++.+++|.+++......+..+.+++.++|++|+|||++|+.++..
T Consensus 323 ~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 323 YGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred CChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 477788888887664221111223357899999999999999999853
No 212
>PRK06526 transposase; Provisional
Probab=96.91 E-value=0.0013 Score=68.16 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=19.8
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.-+.|+|++|+|||+||.++..
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~ 120 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGI 120 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHH
Confidence 4589999999999999999875
No 213
>PRK09183 transposase/IS protein; Provisional
Probab=96.91 E-value=0.0025 Score=66.61 Aligned_cols=22 Identities=41% Similarity=0.489 Sum_probs=19.6
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
..+.|+|++|+|||+||..+..
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4688999999999999999874
No 214
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.89 E-value=0.0021 Score=78.08 Aligned_cols=162 Identities=20% Similarity=0.225 Sum_probs=83.8
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
+|.++-+++|.+++............++.++|++|+||||+|+.++.. ....| +-+..+...+...+...-....
T Consensus 325 ~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~---~~i~~~~~~d~~~i~g~~~~~~ 399 (784)
T PRK10787 325 YGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKY---VRMALGGVRDEAEIRGHRRTYI 399 (784)
T ss_pred cCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCE---EEEEcCCCCCHHHhccchhccC
Confidence 578888999998886322112223457999999999999999999842 22222 1233333333322211110000
Q ss_pred cCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCccc----hhhhhcccCC---------------CCCCcEEEEec
Q 038861 81 SNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENYND----WELLNRPFKA---------------GTSGSKIIVTT 141 (1165)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~----~~~l~~~~~~---------------~~~~~~iiiTt 141 (1165)
..........+.+. ....-++++|.++...... ...+...+.+ .-.+..+|.|+
T Consensus 400 ------g~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~Ta 472 (784)
T PRK10787 400 ------GSMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATS 472 (784)
T ss_pred ------CCCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcC
Confidence 11112223333322 2233478899996543221 1223222211 11334445555
Q ss_pred CchHHHHh-hcccceeeCCCCCHHHHHHHHhhcc
Q 038861 142 RNRVVAER-VGSVREYPLGELSKEDCLRVLTQHS 174 (1165)
Q Consensus 142 R~~~~~~~-~~~~~~~~l~~l~~~e~~~lf~~~~ 174 (1165)
....+... .+....+++.+++++|-.++...+.
T Consensus 473 N~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 473 NSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred CCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 44332222 2344678899999988877776653
No 215
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.88 E-value=0.0011 Score=70.84 Aligned_cols=49 Identities=14% Similarity=0.316 Sum_probs=39.9
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDD 49 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 49 (1165)
+|-++.++++++++.......+.+.++++++|++|+||||||+.+++..
T Consensus 54 ~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 54 FGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred cCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5889999999999976543234456889999999999999999998643
No 216
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.87 E-value=0.0082 Score=68.42 Aligned_cols=155 Identities=12% Similarity=0.084 Sum_probs=79.4
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIK 103 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 103 (1165)
.++-|.++|++|+|||.+|++++.. ....| +.+.. .. +.... ...+...+...+...-..
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e--~~~~~-----~~l~~----~~----l~~~~-----vGese~~l~~~f~~A~~~ 317 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIAND--WQLPL-----LRLDV----GK----LFGGI-----VGESESRMRQMIRIAEAL 317 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHH--hCCCE-----EEEEh----HH----hcccc-----cChHHHHHHHHHHHHHhc
Confidence 4567899999999999999999853 22111 22111 11 11100 011122222233322345
Q ss_pred ceEEEEEeCCCCCCc-----cc-------hhhhhcccCCCCCCcEEEEecCchHH-HHhh----cccceeeCCCCCHHHH
Q 038861 104 KKFLLVLDDMWNENY-----ND-------WELLNRPFKAGTSGSKIIVTTRNRVV-AERV----GSVREYPLGELSKEDC 166 (1165)
Q Consensus 104 ~~~LlvlDdv~~~~~-----~~-------~~~l~~~~~~~~~~~~iiiTtR~~~~-~~~~----~~~~~~~l~~l~~~e~ 166 (1165)
.+++|++|+++..-. .+ ...+...+.....+..||.||...+. ...+ .-...+.++..+.++-
T Consensus 318 ~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR 397 (489)
T CHL00195 318 SPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEER 397 (489)
T ss_pred CCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHH
Confidence 789999999953210 00 01111222222334456667765431 1111 2235788888899999
Q ss_pred HHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCc
Q 038861 167 LRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLP 201 (1165)
Q Consensus 167 ~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 201 (1165)
.++|..+...... .... ......+++.+.|.-
T Consensus 398 ~~Il~~~l~~~~~-~~~~--~~dl~~La~~T~GfS 429 (489)
T CHL00195 398 EKIFKIHLQKFRP-KSWK--KYDIKKLSKLSNKFS 429 (489)
T ss_pred HHHHHHHHhhcCC-Cccc--ccCHHHHHhhcCCCC
Confidence 9999877533221 0000 123456777777653
No 217
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.87 E-value=0.0046 Score=72.07 Aligned_cols=41 Identities=29% Similarity=0.369 Sum_probs=32.3
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhC
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+|.+..++.+...+... ...-|.|+|++|+|||++|+.+++
T Consensus 68 iGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 68 IGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred eCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHH
Confidence 57888888888776432 224578999999999999999974
No 218
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.86 E-value=9.5e-05 Score=64.72 Aligned_cols=93 Identities=15% Similarity=0.239 Sum_probs=48.2
Q ss_pred eeccCcccccccccc---ccCcccccccccCCCCccccCcccc-cCCCccEEeccCcchhccccccccCCCCcceeeccC
Q 038861 392 FSLWGYCNIFNLPNE---IGNLRHLRFLNLSGTNIQILPESIN-SLYNLHTILLEDCRRLKKLCNDMGNLTKLHHLRNSN 467 (1165)
Q Consensus 392 l~l~~~~~l~~lp~~---~~~l~~Lr~L~L~~~~i~~lp~~~~-~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~ 467 (1165)
++++.| .+..+++. +.+..+|+..+|++|.++..|+.|. +.+-+.+|++++ +.+..+|.++..++.|+.|+++.
T Consensus 32 ldLssc-~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 32 LDLSSC-QLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRF 109 (177)
T ss_pred cccccc-hhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhccccc
Confidence 344444 44444333 3344555555666666666655553 333556666665 34455555566666666666666
Q ss_pred CCCCCCCCCCccccccccee
Q 038861 468 VHSLGEMPKGFGKLTCLLTL 487 (1165)
Q Consensus 468 ~~~~~~~p~~i~~L~~L~~L 487 (1165)
|. +...|.-|..|.+|-.|
T Consensus 110 N~-l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 110 NP-LNAEPRVIAPLIKLDML 128 (177)
T ss_pred Cc-cccchHHHHHHHhHHHh
Confidence 55 44445444444444444
No 219
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.0026 Score=74.60 Aligned_cols=122 Identities=16% Similarity=0.235 Sum_probs=70.8
Q ss_pred CCchHHHHHHHHHHhcCCCC---CCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSR---ADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSIL 77 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~---~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~ 77 (1165)
||.++.++.+.+.+...+.+ ...++.+....||.|||||-||++++.. .-+.-+..+-++.+...... .+.
T Consensus 494 iGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~--Lfg~e~aliR~DMSEy~EkH----sVS 567 (786)
T COG0542 494 IGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA--LFGDEQALIRIDMSEYMEKH----SVS 567 (786)
T ss_pred eChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH--hcCCCccceeechHHHHHHH----HHH
Confidence 68888899998888754321 2234567778999999999999999842 21111333444444322221 222
Q ss_pred HhccCCCCCCCCHHHHHHHHHHHhcCceE-EEEEeCCCCCCccchhhhhcccCC
Q 038861 78 MSISNVTVNDNDLNSLQEKLEKELIKKKF-LLVLDDMWNENYNDWELLNRPFKA 130 (1165)
Q Consensus 78 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-LlvlDdv~~~~~~~~~~l~~~~~~ 130 (1165)
+-++. ++.-..-++ .-.+-+..+.++| +|.||++...+++.+..+..-+..
T Consensus 568 rLIGa-PPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 568 RLIGA-PPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred HHhCC-CCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 22332 222222222 2234445566766 999999977776666666555544
No 220
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0027 Score=72.19 Aligned_cols=162 Identities=18% Similarity=0.194 Sum_probs=86.2
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
+|-++-+++|+++|.-......-...++.++||+|||||+|++.++. .....|-. +.++.-.|..++-- -
T Consensus 326 YGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~RkfvR---~sLGGvrDEAEIRG-----H 395 (782)
T COG0466 326 YGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFVR---ISLGGVRDEAEIRG-----H 395 (782)
T ss_pred cCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEEE---EecCccccHHHhcc-----c
Confidence 47788899999988522111223447999999999999999999995 34445522 33333333322211 0
Q ss_pred cCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCccc----hhhhhcccCC------------C--CCCcEEEEecC
Q 038861 81 SNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENYND----WELLNRPFKA------------G--TSGSKIIVTTR 142 (1165)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~----~~~l~~~~~~------------~--~~~~~iiiTtR 142 (1165)
..... +.-+..+.+-+++. +.+.-|++||.++-....- ..++..-+.+ . .-.-.+.|||-
T Consensus 396 RRTYI-GamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTA 473 (782)
T COG0466 396 RRTYI-GAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATA 473 (782)
T ss_pred ccccc-ccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeec
Confidence 00111 11122233333332 4456799999985422110 0111111111 0 11123445554
Q ss_pred ch-H--HHHhhcccceeeCCCCCHHHHHHHHhhcc
Q 038861 143 NR-V--VAERVGSVREYPLGELSKEDCLRVLTQHS 174 (1165)
Q Consensus 143 ~~-~--~~~~~~~~~~~~l~~l~~~e~~~lf~~~~ 174 (1165)
+. + ...-++...++++.+.+++|-.+.-.++.
T Consensus 474 Nsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 474 NSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred CccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 42 2 12234566889999999999888776664
No 221
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.83 E-value=0.0046 Score=76.65 Aligned_cols=135 Identities=18% Similarity=0.186 Sum_probs=71.5
Q ss_pred CCchHHHHHHHHHHhcCCC---CCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDS---RADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSIL 77 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~---~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~ 77 (1165)
+|.++.++.+...+..... ..+.+...+.++|+.|+|||+||+.+++. .-+.-...+-++.+...+...+.
T Consensus 512 ~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~~---- 585 (821)
T CHL00095 512 IGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTVS---- 585 (821)
T ss_pred cChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccHH----
Confidence 5788888888888763221 01223456778999999999999999842 21111233334443322221111
Q ss_pred HhccCCCCCCCCHHHHHHHHHHHhcCce-EEEEEeCCCCCCccchhhhhcccCCC-----------CCCcEEEEecCc
Q 038861 78 MSISNVTVNDNDLNSLQEKLEKELIKKK-FLLVLDDMWNENYNDWELLNRPFKAG-----------TSGSKIIVTTRN 143 (1165)
Q Consensus 78 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~-~LlvlDdv~~~~~~~~~~l~~~~~~~-----------~~~~~iiiTtR~ 143 (1165)
.-++.+ ......++ ...+.+.++.++ .++++|+++......+..+...+..+ -..+.||+||..
T Consensus 586 ~l~g~~-~gyvg~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 586 KLIGSP-PGYVGYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred HhcCCC-CcccCcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence 111211 11111111 112333444444 69999999877666666665554432 135566667664
No 222
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.81 E-value=0.0041 Score=76.84 Aligned_cols=120 Identities=13% Similarity=0.166 Sum_probs=62.8
Q ss_pred CCchHHHHHHHHHHhcCCCC---CCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSR---ADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSIL 77 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~---~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~ 77 (1165)
+|.+..++.+...+.....+ .+.+..++.++|+.|+|||++|+.++.. ........+.+.++.-... . ...
T Consensus 571 iGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~~-~---~~~ 644 (857)
T PRK10865 571 IGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFMEK-H---SVS 644 (857)
T ss_pred eCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhhh-h---hHH
Confidence 57888888888888643210 1122357889999999999999999842 2122223344444322111 1 111
Q ss_pred HhccCCCCCCCCHHHHHHHHHHHhcC-ceEEEEEeCCCCCCccchhhhhccc
Q 038861 78 MSISNVTVNDNDLNSLQEKLEKELIK-KKFLLVLDDMWNENYNDWELLNRPF 128 (1165)
Q Consensus 78 ~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~~~~~~~~~~l~~~~ 128 (1165)
+-++. .......++ ...+.+.++. ..-+|+||++.......+..+...+
T Consensus 645 ~LiG~-~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~il 694 (857)
T PRK10865 645 RLVGA-PPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVL 694 (857)
T ss_pred HHhCC-CCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHH
Confidence 11221 111111111 1122233322 3369999999766666666555444
No 223
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.81 E-value=0.0026 Score=63.19 Aligned_cols=194 Identities=18% Similarity=0.153 Sum_probs=97.2
Q ss_pred CchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcch----hccCCceEEEEEcCCC-CHHHHHHHH
Q 038861 2 GRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRV----RRHFEIKAWTFVSEDF-DVFRVTKSI 76 (1165)
Q Consensus 2 GR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~----~~~f~~~~w~~~~~~~-~~~~~~~~i 76 (1165)
++++..+++.+.... +...-..++|+.|.||-|.+..+.++..- +-+-+..-|.+-+... .+..+-..-
T Consensus 17 ~~~e~~~~Lksl~~~------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 17 YHEELANLLKSLSST------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNY 90 (351)
T ss_pred cHHHHHHHHHHhccc------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccc
Confidence 344555555554431 23456899999999999998777643110 1112223343322210 000000000
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHHhc--------CceE-EEEEeCCCCCCccchhhhhcccCCCCCCcEEEEec----Cc
Q 038861 77 LMSISNVTVNDNDLNSLQEKLEKELI--------KKKF-LLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTT----RN 143 (1165)
Q Consensus 77 ~~~l~~~~~~~~~~~~~~~~l~~~l~--------~~~~-LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTt----R~ 143 (1165)
--++.+.+....+....++.+++.-+ .+++ ++|+-.++.-+.+.-..+.+....-...+|+|+.. |-
T Consensus 91 HlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~Sri 170 (351)
T KOG2035|consen 91 HLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRI 170 (351)
T ss_pred eEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccc
Confidence 01111111122222223333332221 2233 56666665443333334444433334578888743 33
Q ss_pred hHHHHhhcccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCC-chHHHHH
Q 038861 144 RVVAERVGSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGL-PLAAKTL 207 (1165)
Q Consensus 144 ~~~~~~~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~ 207 (1165)
-+..++ .--.+.+...+++|....++..+...+-.-+ .+++.+|+++++|. -.|+-++
T Consensus 171 IepIrS--RCl~iRvpaps~eeI~~vl~~v~~kE~l~lp----~~~l~rIa~kS~~nLRrAllml 229 (351)
T KOG2035|consen 171 IEPIRS--RCLFIRVPAPSDEEITSVLSKVLKKEGLQLP----KELLKRIAEKSNRNLRRALLML 229 (351)
T ss_pred hhHHhh--heeEEeCCCCCHHHHHHHHHHHHHHhcccCc----HHHHHHHHHHhcccHHHHHHHH
Confidence 232222 2246889999999999988877644432212 48999999999885 4555544
No 224
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.77 E-value=0.0055 Score=62.55 Aligned_cols=49 Identities=16% Similarity=0.202 Sum_probs=36.5
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHH
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTK 74 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~ 74 (1165)
..-+++.|+|++|+|||++|.+++.. .......++|++... ++..++.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 34679999999999999999988743 334456788998865 55555444
No 225
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.76 E-value=0.011 Score=60.73 Aligned_cols=169 Identities=20% Similarity=0.253 Sum_probs=88.3
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCC-cchhccCCceEEEEEcCCCC-----HHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKD-DRVRRHFEIKAWTFVSEDFD-----VFRVTK 74 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~-~~~~~~f~~~~w~~~~~~~~-----~~~~~~ 74 (1165)
+|-.++..++..++.+.. -.+...-|.|.|+.|.|||+|...+..+ .+...+| +-+....... +..+..
T Consensus 27 ~g~~~~~~~l~~~lkqt~--~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 27 FGVQDEQKHLSELLKQTI--LHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred eehHHHHHHHHHHHHHHH--HhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHHHH
Confidence 356677777777775422 1122345889999999999998777654 1222232 3344433332 233444
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHhcC------ceEEEEEeCCCCCCccc-----hhhhhcccCCCCCCcEEEEecCc
Q 038861 75 SILMSISNVTVNDNDLNSLQEKLEKELIK------KKFLLVLDDMWNENYND-----WELLNRPFKAGTSGSKIIVTTRN 143 (1165)
Q Consensus 75 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~------~~~LlvlDdv~~~~~~~-----~~~l~~~~~~~~~~~~iiiTtR~ 143 (1165)
++..++........+..+....+-+.|+. -++++|+|.++-..... +..+...-....|-|.|-+|||-
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 44444433222222333344444455532 36899998884422111 11111111224567788899996
Q ss_pred hHH---HH----hhcccceeeCCCCCHHHHHHHHhhcc
Q 038861 144 RVV---AE----RVGSVREYPLGELSKEDCLRVLTQHS 174 (1165)
Q Consensus 144 ~~~---~~----~~~~~~~~~l~~l~~~e~~~lf~~~~ 174 (1165)
... .+ .+....++-.+.+.-++-..+++...
T Consensus 182 d~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 182 DILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 422 11 22222345556677777777776653
No 226
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.023 Score=63.27 Aligned_cols=174 Identities=18% Similarity=0.165 Sum_probs=92.7
Q ss_pred CchHHHHHHHHHHhcCCC------CCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHH
Q 038861 2 GRKKDKDEIVELLLRDDS------RADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKS 75 (1165)
Q Consensus 2 GR~~~~~~l~~~l~~~~~------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~ 75 (1165)
|-++.++++.+.+..-.. .+-.+++=|.++|++|.|||.||++++.+..+ -++.++.. +
T Consensus 194 G~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v-------Pf~~isAp--------e 258 (802)
T KOG0733|consen 194 GLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV-------PFLSISAP--------E 258 (802)
T ss_pred ChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC-------ceEeecch--------h
Confidence 566777777766653111 12345667899999999999999999964221 23333322 2
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCcc-ch----------hhhhccc---CCC---CCCcEEE
Q 038861 76 ILMSISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENYN-DW----------ELLNRPF---KAG---TSGSKII 138 (1165)
Q Consensus 76 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~-~~----------~~l~~~~---~~~---~~~~~ii 138 (1165)
+..... ..+.+.+.+.+.+....-++++++|+++-.... +| .++...+ ... +.+.-||
T Consensus 259 ivSGvS-----GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVI 333 (802)
T KOG0733|consen 259 IVSGVS-----GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVI 333 (802)
T ss_pred hhcccC-----cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEE
Confidence 222222 334455555566666778999999999653211 11 1122111 111 2232233
Q ss_pred E-ecCchHHHHhhc----ccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCC
Q 038861 139 V-TTRNRVVAERVG----SVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGL 200 (1165)
Q Consensus 139 i-TtR~~~~~~~~~----~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 200 (1165)
- |+|...+...++ -.+.|.+.--++.+-.++++..+.+-.. ...-+ .++|++.+-|.
T Consensus 334 gATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl-~g~~d----~~qlA~lTPGf 395 (802)
T KOG0733|consen 334 GATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRL-SGDFD----FKQLAKLTPGF 395 (802)
T ss_pred ecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCC-CCCcC----HHHHHhcCCCc
Confidence 2 556543333222 2256777777777777776665433222 11222 34566666554
No 227
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.75 E-value=0.0065 Score=67.39 Aligned_cols=143 Identities=13% Similarity=0.078 Sum_probs=78.0
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhc-------------------cCCceEEE
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRR-------------------HFEIKAWT 61 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~-------------------~f~~~~w~ 61 (1165)
+|-+....++..+..+... ....+.++|++|+||||+|.++++...-.. ..+.+..+
T Consensus 4 ~~~~~~~~~l~~~~~~~~~----~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel 79 (325)
T COG0470 4 VPWQEAVKRLLVQALESGR----LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLEL 79 (325)
T ss_pred ccchhHHHHHHHHHHhcCC----CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEe
Confidence 3556677777777764321 233589999999999999998885321111 11233333
Q ss_pred EEcCCCC---HHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEE
Q 038861 62 FVSEDFD---VFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKII 138 (1165)
Q Consensus 62 ~~~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~ii 138 (1165)
..+.... ..+..+++.+...... ..++.-++++|+++..+...-..+...+......+++|
T Consensus 80 ~~s~~~~~~i~~~~vr~~~~~~~~~~----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~i 143 (325)
T COG0470 80 NPSDLRKIDIIVEQVRELAEFLSESP----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFI 143 (325)
T ss_pred cccccCCCcchHHHHHHHHHHhccCC----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEE
Confidence 3332222 1122222222211110 02566799999997766555556666665566778888
Q ss_pred EecCch-HHHHhh-cccceeeCCCCCH
Q 038861 139 VTTRNR-VVAERV-GSVREYPLGELSK 163 (1165)
Q Consensus 139 iTtR~~-~~~~~~-~~~~~~~l~~l~~ 163 (1165)
++|... .+.... .....+++.+.+.
T Consensus 144 l~~n~~~~il~tI~SRc~~i~f~~~~~ 170 (325)
T COG0470 144 LITNDPSKILPTIRSRCQRIRFKPPSR 170 (325)
T ss_pred EEcCChhhccchhhhcceeeecCCchH
Confidence 888743 333222 2224566666333
No 228
>PRK07261 topology modulation protein; Provisional
Probab=96.74 E-value=0.0034 Score=61.15 Aligned_cols=65 Identities=23% Similarity=0.377 Sum_probs=39.4
Q ss_pred EEEEEccCCchHHHHHHHHhCCcchh-ccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCce
Q 038861 27 VISIIGMGGVGKTTLAQLVYKDDRVR-RHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKKK 105 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 105 (1165)
.|.|+|++|+||||||+++....... -+.+...|-.. ....+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN---------------------WQERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc---------------------cccCCHHHHHHHHHHHHhCCC
Confidence 48999999999999999987532111 12333334110 112234455666666676666
Q ss_pred EEEEEeCCC
Q 038861 106 FLLVLDDMW 114 (1165)
Q Consensus 106 ~LlvlDdv~ 114 (1165)
.|+|+..
T Consensus 61 --wIidg~~ 67 (171)
T PRK07261 61 --WIIDGNY 67 (171)
T ss_pred --EEEcCcc
Confidence 5778873
No 229
>PRK06921 hypothetical protein; Provisional
Probab=96.73 E-value=0.0041 Score=65.22 Aligned_cols=37 Identities=22% Similarity=0.208 Sum_probs=27.0
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhcc-CCceEEEEE
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRH-FEIKAWTFV 63 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~w~~~ 63 (1165)
...+.++|.+|+|||.||.++++. +... ...++++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH
Confidence 356899999999999999999864 3332 344566653
No 230
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.73 E-value=0.012 Score=57.59 Aligned_cols=116 Identities=20% Similarity=0.246 Sum_probs=61.0
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
+|-|...+.+++--..-. .+-+..-|.+||.-|+|||+|++++.+ ++.+..-.- |.+.+.
T Consensus 63 ~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glrL--VEV~k~-------------- 122 (287)
T COG2607 63 VGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLRL--VEVDKE-------------- 122 (287)
T ss_pred hCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCeE--EEEcHH--------------
Confidence 466677777664332111 112234589999999999999999985 344433332 222211
Q ss_pred cCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCC-CCccchhhhhcccCCC---CCCcEEEEecCc
Q 038861 81 SNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWN-ENYNDWELLNRPFKAG---TSGSKIIVTTRN 143 (1165)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~-~~~~~~~~l~~~~~~~---~~~~~iiiTtR~ 143 (1165)
+-.+...+.+.++. +.+|++|..||..= .....+..+...+..+ .|...++..|.+
T Consensus 123 -----dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 123 -----DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred -----HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 00111112222221 46799999999832 2334466665554432 233344444444
No 231
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.71 E-value=0.0075 Score=62.35 Aligned_cols=47 Identities=15% Similarity=0.154 Sum_probs=34.9
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHH
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRV 72 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~ 72 (1165)
..-.++.|+|.+|+|||++|.+++.. .......++|++.. ..+...+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 34579999999999999999998853 33345678898876 5555443
No 232
>PRK04132 replication factor C small subunit; Provisional
Probab=96.71 E-value=0.021 Score=68.99 Aligned_cols=156 Identities=13% Similarity=0.037 Sum_probs=93.0
Q ss_pred EEc--cCCchHHHHHHHHhCCcchhccC-CceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCceE
Q 038861 30 IIG--MGGVGKTTLAQLVYKDDRVRRHF-EIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKKKF 106 (1165)
Q Consensus 30 i~G--~~GiGKTtLa~~~~~~~~~~~~f-~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 106 (1165)
+.| |.|+||||+|.+++++. ....+ ..++-++.++..++..+. +++......... -..+.-
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~~--------------~~~~~K 632 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALAREL-FGENWRHNFLELNASDERGINVIR-EKVKEFARTKPI--------------GGASFK 632 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHHHHH-HHHHHHHhcCCc--------------CCCCCE
Confidence 347 88999999999998642 11222 234456665544444333 222221110000 012457
Q ss_pred EEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCch-HHHHhh-cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCc
Q 038861 107 LLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNR-VVAERV-GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQ 184 (1165)
Q Consensus 107 LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~-~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~ 184 (1165)
++|+|+++..+......+...+......+++|+++.+. .+.... .....+++.+++.++..+.+...+..... ..
T Consensus 633 VvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi-~i-- 709 (846)
T PRK04132 633 IIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL-EL-- 709 (846)
T ss_pred EEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC-CC--
Confidence 99999998877666777766666555677777766654 333222 23367999999999888777755432211 11
Q ss_pred chHHHHHHHHHHcCCCchHHH
Q 038861 185 SLKEVREKIAMKCKGLPLAAK 205 (1165)
Q Consensus 185 ~~~~~~~~i~~~~~g~Plal~ 205 (1165)
..+....|++.++|-+-...
T Consensus 710 -~~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 710 -TEEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred -CHHHHHHHHHHcCCCHHHHH
Confidence 13678899999999774433
No 233
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.71 E-value=0.013 Score=72.11 Aligned_cols=177 Identities=16% Similarity=0.114 Sum_probs=90.1
Q ss_pred CCchHHHHHHHHHHhcCC-------CCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDD-------SRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVT 73 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~-------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~ 73 (1165)
.|.++.++++.+++...- ..+-...+-|.++|++|+|||++|+++++. .... ++.+... .+
T Consensus 181 ~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~-----~i~i~~~----~i- 248 (733)
T TIGR01243 181 GGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAY-----FISINGP----EI- 248 (733)
T ss_pred cCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCe-----EEEEecH----HH-
Confidence 478888888877764210 001123456899999999999999999853 2222 1222211 11
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCc------c-----chhhhhcccCCC-CCCcEEEE-e
Q 038861 74 KSILMSISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENY------N-----DWELLNRPFKAG-TSGSKIIV-T 140 (1165)
Q Consensus 74 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~------~-----~~~~l~~~~~~~-~~~~~iii-T 140 (1165)
.... .......+...+.......+.+|++|+++.... . ....+...+... ..+..++| |
T Consensus 249 ---~~~~-----~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~a 320 (733)
T TIGR01243 249 ---MSKY-----YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGA 320 (733)
T ss_pred ---hccc-----ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEee
Confidence 1100 011122233334444456678999999844210 0 011222222221 12333444 4
Q ss_pred cCchH-HHHhhc----ccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCch
Q 038861 141 TRNRV-VAERVG----SVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPL 202 (1165)
Q Consensus 141 tR~~~-~~~~~~----~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 202 (1165)
|.... +...+. -...+.+...+.++-.+++......... ... .....+++.+.|.--
T Consensus 321 tn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-~~d----~~l~~la~~t~G~~g 382 (733)
T TIGR01243 321 TNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL-AED----VDLDKLAEVTHGFVG 382 (733)
T ss_pred cCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC-ccc----cCHHHHHHhCCCCCH
Confidence 54432 211111 1246778888888888888755322111 111 235678888888653
No 234
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.71 E-value=0.0043 Score=69.86 Aligned_cols=182 Identities=14% Similarity=0.135 Sum_probs=104.5
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhc--cCCceEEEEEcCCCCHHHHHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRR--HFEIKAWTFVSEDFDVFRVTKSILM 78 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~--~f~~~~w~~~~~~~~~~~~~~~i~~ 78 (1165)
||-+--...|...+....- ...-...|+-|+||||+|+-++....-.. ..+. ...=...+.|..
T Consensus 19 vGQe~v~~~L~nal~~~ri-----~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~eP---------C~~C~~Ck~I~~ 84 (515)
T COG2812 19 VGQEHVVKTLSNALENGRI-----AHAYLFSGPRGVGKTTIARILAKALNCENGPTAEP---------CGKCISCKEINE 84 (515)
T ss_pred cccHHHHHHHHHHHHhCcc-----hhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCc---------chhhhhhHhhhc
Confidence 5777777888888865432 23457899999999999988875321111 1110 000011122221
Q ss_pred hccC-----CCCCCCCHHHHHHHHHHHh-----cCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCch-HHH
Q 038861 79 SISN-----VTVNDNDLNSLQEKLEKEL-----IKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNR-VVA 147 (1165)
Q Consensus 79 ~l~~-----~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~-~~~ 147 (1165)
.-.. .......+++.. .+.+.. +++.=+.|+|.|+--+...|..+..-+...++....|+.|.+. .+.
T Consensus 85 g~~~DviEiDaASn~gVddiR-~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIR-EIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred CCcccchhhhhhhccChHHHH-HHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 1000 000112223322 222222 3455689999997766677888887777766777777766654 332
Q ss_pred H-hhcccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCc
Q 038861 148 E-RVGSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLP 201 (1165)
Q Consensus 148 ~-~~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 201 (1165)
. .......|..+.++.++-...+...+...... ...+...-|++..+|-.
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~----~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGIN----IEEDALSLIARAAEGSL 214 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCCc----cCHHHHHHHHHHcCCCh
Confidence 2 23344689999999999888888765433321 22366677777777743
No 235
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.70 E-value=0.0041 Score=70.60 Aligned_cols=79 Identities=23% Similarity=0.244 Sum_probs=55.0
Q ss_pred CCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 038861 21 ADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKE 100 (1165)
Q Consensus 21 ~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 100 (1165)
..+.-++..++|++|+||||||.-++++. .| .++-+++++..+...+-..|...+.......
T Consensus 322 ~RP~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~s~l~------------- 383 (877)
T KOG1969|consen 322 KRPPKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNHSVLD------------- 383 (877)
T ss_pred CCCccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhccccc-------------
Confidence 44567899999999999999999888532 22 4566777777777776666655543222110
Q ss_pred hcCceEEEEEeCCCCCC
Q 038861 101 LIKKKFLLVLDDMWNEN 117 (1165)
Q Consensus 101 l~~~~~LlvlDdv~~~~ 117 (1165)
..+++.-+|+|.++...
T Consensus 384 adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 384 ADSRPVCLVIDEIDGAP 400 (877)
T ss_pred cCCCcceEEEecccCCc
Confidence 02578899999997655
No 236
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.68 E-value=0.019 Score=70.64 Aligned_cols=152 Identities=16% Similarity=0.117 Sum_probs=80.3
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCc
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKK 104 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 104 (1165)
++-+.++|++|+|||++|++++.. ....| +.+.. . +++... -......+...+...-+..
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~----~----~l~~~~-----vGese~~i~~~f~~A~~~~ 546 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRG----P----EILSKW-----VGESEKAIREIFRKARQAA 546 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----H----HHhhcc-----cCcHHHHHHHHHHHHHhcC
Confidence 455899999999999999999964 22222 22221 1 111111 1112222333333333567
Q ss_pred eEEEEEeCCCCCC-------cc-----chhhhhcccCC--CCCCcEEEEecCchHHHH-hh----cccceeeCCCCCHHH
Q 038861 105 KFLLVLDDMWNEN-------YN-----DWELLNRPFKA--GTSGSKIIVTTRNRVVAE-RV----GSVREYPLGELSKED 165 (1165)
Q Consensus 105 ~~LlvlDdv~~~~-------~~-----~~~~l~~~~~~--~~~~~~iiiTtR~~~~~~-~~----~~~~~~~l~~l~~~e 165 (1165)
+.+|++|+++... .. ....+...+.. ...+..||.||...+... .+ +-...+.++..+.++
T Consensus 547 p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~ 626 (733)
T TIGR01243 547 PAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEA 626 (733)
T ss_pred CEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHH
Confidence 8999999984310 00 01222222222 123455666665544322 11 223578899999999
Q ss_pred HHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCc
Q 038861 166 CLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLP 201 (1165)
Q Consensus 166 ~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 201 (1165)
-.++|..+..+... .+. .....+++.+.|.-
T Consensus 627 R~~i~~~~~~~~~~-~~~----~~l~~la~~t~g~s 657 (733)
T TIGR01243 627 RKEIFKIHTRSMPL-AED----VDLEELAEMTEGYT 657 (733)
T ss_pred HHHHHHHHhcCCCC-Ccc----CCHHHHHHHcCCCC
Confidence 99998765432211 111 12456777887753
No 237
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.68 E-value=0.00064 Score=64.07 Aligned_cols=84 Identities=25% Similarity=0.183 Sum_probs=43.7
Q ss_pred EEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCceEE
Q 038861 28 ISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKKKFL 107 (1165)
Q Consensus 28 v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 107 (1165)
|.|+|++|+|||+||+.+++. .. ....-+.+....+..++....--.-+.......... ..+ .++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~---~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~---~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LG---RPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLV---RAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HT---CEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCC---TTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hh---cceEEEEeccccccccceeeeeeccccccccccccc---ccc-----cceeE
Confidence 689999999999999999853 21 122345666666665554322211000000000000 000 17899
Q ss_pred EEEeCCCCCCccchhhh
Q 038861 108 LVLDDMWNENYNDWELL 124 (1165)
Q Consensus 108 lvlDdv~~~~~~~~~~l 124 (1165)
+|+|+++.....-+..+
T Consensus 69 l~lDEin~a~~~v~~~L 85 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESL 85 (139)
T ss_dssp EEESSCGG--HHHHHTT
T ss_pred EEECCcccCCHHHHHHH
Confidence 99999965543333333
No 238
>PRK06696 uridine kinase; Validated
Probab=96.64 E-value=0.0026 Score=65.38 Aligned_cols=44 Identities=27% Similarity=0.282 Sum_probs=37.0
Q ss_pred CchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCC
Q 038861 2 GRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 2 GR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
.|++.+++|.+.+.+.. .+++.+|+|.|.+|+||||+|++++..
T Consensus 2 ~~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 2 SRKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred cHHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 58888999999997643 246789999999999999999999853
No 239
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.63 E-value=0.0063 Score=63.23 Aligned_cols=80 Identities=26% Similarity=0.309 Sum_probs=47.2
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCce
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKKK 105 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 105 (1165)
.-+.++|.+|+|||.||.++.++ +...-..+.++++ .++..++...... . .....+.+.++ +-
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~~------~el~~~Lk~~~~~----~----~~~~~l~~~l~-~~ 168 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFITA------PDLLSKLKAAFDE----G----RLEEKLLRELK-KV 168 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEEH------HHHHHHHHHHHhc----C----chHHHHHHHhh-cC
Confidence 34899999999999999999864 3333344555543 4455555444332 1 11222222222 22
Q ss_pred EEEEEeCCCCCCccchh
Q 038861 106 FLLVLDDMWNENYNDWE 122 (1165)
Q Consensus 106 ~LlvlDdv~~~~~~~~~ 122 (1165)
=|||+||+.-.....|.
T Consensus 169 dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 169 DLLIIDDIGYEPFSQEE 185 (254)
T ss_pred CEEEEecccCccCCHHH
Confidence 48999999665555553
No 240
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.014 Score=59.54 Aligned_cols=79 Identities=11% Similarity=0.212 Sum_probs=49.4
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcch--hccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhc
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRV--RRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELI 102 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~--~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 102 (1165)
-|+|.++||+|.|||+|.+++++...+ .+.|.....+.+.. ..++.+.+.+- ..-.....+.|.+.++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsES------gKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSES------GKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhhh------hhHHHHHHHHHHHHHh
Confidence 478999999999999999999986544 34554444444432 23444443322 1234455566666666
Q ss_pred Cce--EEEEEeCC
Q 038861 103 KKK--FLLVLDDM 113 (1165)
Q Consensus 103 ~~~--~LlvlDdv 113 (1165)
++. +.+.+|.|
T Consensus 247 d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 247 DRGNLVFVLIDEV 259 (423)
T ss_pred CCCcEEEEEeHHH
Confidence 554 45667888
No 241
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.59 E-value=0.0054 Score=60.92 Aligned_cols=88 Identities=20% Similarity=0.146 Sum_probs=52.2
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcC-CCCHHHHHHHHHHhccCCCC---CCCCHHHHHH-HHHH
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSE-DFDVFRVTKSILMSISNVTV---NDNDLNSLQE-KLEK 99 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~-~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~-~l~~ 99 (1165)
++++.++|+.|+||||.+.+++.. ...+-..+..++... .....+-++..++.++.+.. ...+..+... .+++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHH--HhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 478999999999999999888853 333344555666653 33555667777777775432 2223333333 3333
Q ss_pred HhcCceEEEEEeCCC
Q 038861 100 ELIKKKFLLVLDDMW 114 (1165)
Q Consensus 100 ~l~~~~~LlvlDdv~ 114 (1165)
.-..+.=++++|=..
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 322334578888763
No 242
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.56 E-value=0.00027 Score=61.99 Aligned_cols=83 Identities=20% Similarity=0.235 Sum_probs=67.6
Q ss_pred eeccCcccccccccccc-CcccccccccCCCCccccCcccccCCCccEEeccCcchhccccccccCCCCcceeeccCCCC
Q 038861 392 FSLWGYCNIFNLPNEIG-NLRHLRFLNLSGTNIQILPESINSLYNLHTILLEDCRRLKKLCNDMGNLTKLHHLRNSNVHS 470 (1165)
Q Consensus 392 l~l~~~~~l~~lp~~~~-~l~~Lr~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~ 470 (1165)
.+++++ .++++|..|. +++-.+.|++++|.|+.+|..+..++.|+.|+++.|. +...|..|..|.+|-+|+..+|.
T Consensus 58 i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds~~na- 134 (177)
T KOG4579|consen 58 ISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDSPENA- 134 (177)
T ss_pred Eecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcCCCCc-
Confidence 467777 7888888874 4558899999999999999999999999999999864 55667788889999999998887
Q ss_pred CCCCCCC
Q 038861 471 LGEMPKG 477 (1165)
Q Consensus 471 ~~~~p~~ 477 (1165)
...+|-+
T Consensus 135 ~~eid~d 141 (177)
T KOG4579|consen 135 RAEIDVD 141 (177)
T ss_pred cccCcHH
Confidence 5666644
No 243
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.016 Score=65.49 Aligned_cols=154 Identities=16% Similarity=0.100 Sum_probs=81.4
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhc
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELI 102 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 102 (1165)
.+++-|..+|++|.|||++|+++++. ....| +.+... +++.... ..+...+.+.+++.-+
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne--~~~nF-----lsvkgp--------EL~sk~v-----GeSEr~ir~iF~kAR~ 525 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANE--AGMNF-----LSVKGP--------ELFSKYV-----GESERAIREVFRKARQ 525 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhh--hcCCe-----eeccCH--------HHHHHhc-----CchHHHHHHHHHHHhh
Confidence 45678999999999999999999964 33333 222211 1111111 1223333334444434
Q ss_pred CceEEEEEeCCCCCCc-----------cchhhhhcccCCCCCC--cEEEE-ecCchHHHHhh-c---ccceeeCCCCCHH
Q 038861 103 KKKFLLVLDDMWNENY-----------NDWELLNRPFKAGTSG--SKIIV-TTRNRVVAERV-G---SVREYPLGELSKE 164 (1165)
Q Consensus 103 ~~~~LlvlDdv~~~~~-----------~~~~~l~~~~~~~~~~--~~iii-TtR~~~~~~~~-~---~~~~~~l~~l~~~ 164 (1165)
-.+.+|.||.++.... ....++...+...... .-||- |-|...+-..+ + -+..+-++.-+.+
T Consensus 526 ~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~ 605 (693)
T KOG0730|consen 526 VAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLE 605 (693)
T ss_pred cCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHH
Confidence 5678999998844211 1122233333333222 22333 33443332222 2 3456778888888
Q ss_pred HHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCc
Q 038861 165 DCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLP 201 (1165)
Q Consensus 165 e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 201 (1165)
.-.++|+.++.+.... +. -...+|++++.|.-
T Consensus 606 aR~~Ilk~~~kkmp~~-~~----vdl~~La~~T~g~S 637 (693)
T KOG0730|consen 606 ARLEILKQCAKKMPFS-ED----VDLEELAQATEGYS 637 (693)
T ss_pred HHHHHHHHHHhcCCCC-cc----ccHHHHHHHhccCC
Confidence 8889999887544321 11 23455666666543
No 244
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.51 E-value=0.017 Score=59.95 Aligned_cols=87 Identities=16% Similarity=0.086 Sum_probs=52.5
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhccC------CceEEEEEcCCCCHHHHHHHHHHhccCC---------CCCCC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHF------EIKAWTFVSEDFDVFRVTKSILMSISNV---------TVNDN 88 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f------~~~~w~~~~~~~~~~~~~~~i~~~l~~~---------~~~~~ 88 (1165)
.-.++.|+|++|+|||++|.+++.. ..... ..++|+.....++...+.+ +....... .....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLVQ-LAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHHH-HHHHhccchhhhhccEEEEeCC
Confidence 4579999999999999999988743 22222 5678888777666654432 22222110 01223
Q ss_pred CHHHHHHHHHHHhc----CceEEEEEeCC
Q 038861 89 DLNSLQEKLEKELI----KKKFLLVLDDM 113 (1165)
Q Consensus 89 ~~~~~~~~l~~~l~----~~~~LlvlDdv 113 (1165)
+.++....+.+..+ .+.-++|+|.+
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsi 123 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSV 123 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence 44555555554432 34558899987
No 245
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.51 E-value=0.015 Score=61.80 Aligned_cols=88 Identities=20% Similarity=0.158 Sum_probs=47.6
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCC-CHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhc
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDF-DVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELI 102 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 102 (1165)
+.++++|+|+.|+||||++..++.....+..-..+..++..... .....+....+.++.+.....+...+...+.+ +.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~-~~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR-LR 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH-cc
Confidence 46799999999999999999887533222111345555544321 12223333344444333223344444444443 33
Q ss_pred CceEEEEEeCC
Q 038861 103 KKKFLLVLDDM 113 (1165)
Q Consensus 103 ~~~~LlvlDdv 113 (1165)
+ .-+|++|..
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 3 457778854
No 246
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.014 Score=63.81 Aligned_cols=45 Identities=31% Similarity=0.369 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHhcCCC---CCCCCcEEEEEEccCCchHHHHHHHHhCC
Q 038861 4 KKDKDEIVELLLRDDS---RADDGFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 4 ~~~~~~l~~~l~~~~~---~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
..|+++|+++|..... -++.-++=|.++|++|.|||-||++++-.
T Consensus 313 K~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 313 KQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred HHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 3578888888865321 13334667899999999999999999854
No 247
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.50 E-value=0.0027 Score=68.42 Aligned_cols=102 Identities=22% Similarity=0.227 Sum_probs=53.1
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCce
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKKK 105 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 105 (1165)
.-+.++|++|+|||.||.++++. ....-..++++++ .+++..+...-.. ...+... . .+.+. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~------~~l~~~l~~~~~~---~~~~~~~---~-~~~l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTA------DELIEILREIRFN---NDKELEE---V-YDLLI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEH------HHHHHHHHHHHhc---cchhHHH---H-HHHhc-cC
Confidence 45999999999999999999864 3333335556553 2333333221100 0111111 1 22222 22
Q ss_pred EEEEEeCCCCCCccchh--hhhcccCCC-CCCcEEEEecCc
Q 038861 106 FLLVLDDMWNENYNDWE--LLNRPFKAG-TSGSKIIVTTRN 143 (1165)
Q Consensus 106 ~LlvlDdv~~~~~~~~~--~l~~~~~~~-~~~~~iiiTtR~ 143 (1165)
=|||+||+.......|. .+...+... ..+-.+||||.-
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 48999999665444442 222222211 124457888874
No 248
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.47 E-value=0.0014 Score=61.54 Aligned_cols=108 Identities=20% Similarity=0.153 Sum_probs=60.9
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcch-hccCCceEEEEEcCCCCHHHHHHHHHHh
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRV-RRHFEIKAWTFVSEDFDVFRVTKSILMS 79 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~-~~~f~~~~w~~~~~~~~~~~~~~~i~~~ 79 (1165)
||+...++++.+.+..-.. ....|.|+|.+|+||+++|+.++..... ...|..+ .+...
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~~------------- 60 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCASL------------- 60 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHCT-------------
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhhC-------------
Confidence 6888888888888865322 2235899999999999999988753221 1112110 00000
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCccchhhhhcccCCC-CCCcEEEEecCch
Q 038861 80 ISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENYNDWELLNRPFKAG-TSGSKIIVTTRNR 144 (1165)
Q Consensus 80 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~-~~~~~iiiTtR~~ 144 (1165)
. .+.+.+ .+.-.++++|++.-.......+...+... ....|+|.||+..
T Consensus 61 ---------~----~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 61 ---------P----AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp ---------C----HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred ---------c----HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 0 111111 13345779999776555555555554432 5678999999864
No 249
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.47 E-value=0.0095 Score=58.76 Aligned_cols=36 Identities=33% Similarity=0.536 Sum_probs=27.5
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEE
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWT 61 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~ 61 (1165)
...+|++.|++|+||||+|+.++. +....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 346899999999999999999984 344455555554
No 250
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.46 E-value=0.11 Score=55.25 Aligned_cols=153 Identities=12% Similarity=0.064 Sum_probs=88.1
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCc---c---hh--ccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDD---R---VR--RHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEK 96 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~---~---~~--~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 96 (1165)
..+..++|..|+||+++|+.+.+.. . .. .+-+...++.... .....+++...
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g--------------------~~i~vd~Ir~l 77 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD--------------------KDLSKSEFLSA 77 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC--------------------CcCCHHHHHHH
Confidence 4566799999999999999887532 0 01 1111222221101 11122232222
Q ss_pred HHHH----h-cCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCc-hHHHHh-hcccceeeCCCCCHHHHHHH
Q 038861 97 LEKE----L-IKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRN-RVVAER-VGSVREYPLGELSKEDCLRV 169 (1165)
Q Consensus 97 l~~~----l-~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~-~~~~~~-~~~~~~~~l~~l~~~e~~~l 169 (1165)
+... . .+.+-++|+|+++..+......+...+...++++.+|++|.. ..+... ......+++.++++++..+.
T Consensus 78 ~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~ 157 (299)
T PRK07132 78 INKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAK 157 (299)
T ss_pred HHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHH
Confidence 2211 0 146678889998666555566677777766677777765543 344433 23446899999999999887
Q ss_pred HhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHH
Q 038861 170 LTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTL 207 (1165)
Q Consensus 170 f~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 207 (1165)
+.... . + .+.+..++...+|.--|+..+
T Consensus 158 l~~~~--~-----~---~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 158 LLSKN--K-----E---KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred HHHcC--C-----C---hhHHHHHHHHcCCHHHHHHHH
Confidence 77541 1 1 144666676777643555553
No 251
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.46 E-value=0.0021 Score=58.81 Aligned_cols=21 Identities=48% Similarity=0.567 Sum_probs=19.6
Q ss_pred EEEEEccCCchHHHHHHHHhC
Q 038861 27 VISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+|+|.|++|+||||+|++++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999985
No 252
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.45 E-value=0.0087 Score=63.73 Aligned_cols=84 Identities=18% Similarity=0.097 Sum_probs=54.5
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCC-----CCCCCCHHHHHHHH
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNV-----TVNDNDLNSLQEKL 97 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~l 97 (1165)
+.-+++-|+|++|+||||||.+++. .....-..++|++....+++. .+..++.. .....+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~--~~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIA--EAQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 4567899999999999999998874 333445567788876666543 23333221 11233456666665
Q ss_pred HHHhc-CceEEEEEeCC
Q 038861 98 EKELI-KKKFLLVLDDM 113 (1165)
Q Consensus 98 ~~~l~-~~~~LlvlDdv 113 (1165)
...++ +..-++|+|-|
T Consensus 126 ~~li~s~~~~lIVIDSv 142 (325)
T cd00983 126 DSLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHHhccCCCEEEEcch
Confidence 55543 45679999987
No 253
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.42 E-value=0.0063 Score=58.67 Aligned_cols=44 Identities=25% Similarity=0.277 Sum_probs=32.6
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCC
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
||....+.++++.+..... . ...|.|+|..|+||+.+|+.+++.
T Consensus 2 iG~s~~m~~~~~~~~~~a~---~-~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAAS---S-DLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp S--SHHHHHHHHHHHHHTT---S-TS-EEEECSTTSSHHHHHHHHHHC
T ss_pred EeCCHHHHHHHHHHHHHhC---C-CCCEEEEcCCCCcHHHHHHHHHHh
Confidence 6888888888888865432 1 245789999999999999999863
No 254
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.033 Score=65.14 Aligned_cols=176 Identities=13% Similarity=0.118 Sum_probs=96.2
Q ss_pred HHHHHHHHHHhcCCC---CCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhcc
Q 038861 5 KDKDEIVELLLRDDS---RADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSIS 81 (1165)
Q Consensus 5 ~~~~~l~~~l~~~~~---~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~ 81 (1165)
+|+.+++++|..... -+..-++=|.++|++|+|||-||++++-... +=|+.++.. +..+.+.
T Consensus 321 ~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGS--------EFvE~~~ 385 (774)
T KOG0731|consen 321 EELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGS--------EFVEMFV 385 (774)
T ss_pred HHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechH--------HHHHHhc
Confidence 566677777754321 1223456689999999999999999995422 224444432 2222222
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCc---------------cchhhhhcccCCCCC--CcEEEEecCch
Q 038861 82 NVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENY---------------NDWELLNRPFKAGTS--GSKIIVTTRNR 144 (1165)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~---------------~~~~~l~~~~~~~~~--~~~iiiTtR~~ 144 (1165)
.. ......+.....-+..+++|.+|+++.... ..+.++......+.. +..++-+|...
T Consensus 386 g~-----~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~ 460 (774)
T KOG0731|consen 386 GV-----GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRP 460 (774)
T ss_pred cc-----chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCc
Confidence 11 111112222222235678888888743211 112233333333322 33444456555
Q ss_pred HHHHhh-----cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHH
Q 038861 145 VVAERV-----GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAA 204 (1165)
Q Consensus 145 ~~~~~~-----~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 204 (1165)
++.... +-+..+.+..-+..+..++|..++..... ..+..++.+ |+..+-|.+=|.
T Consensus 461 d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~---~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 461 DILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL---DDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC---CcchhhHHH-HHhcCCCCcHHH
Confidence 544321 12356788888888888999988644332 234445666 999998887553
No 255
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.41 E-value=0.0014 Score=65.08 Aligned_cols=103 Identities=17% Similarity=0.038 Sum_probs=47.0
Q ss_pred CCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecC--CCCCcCCcccCCCCCCceeeeccCCCC--cccCCCCCCCCcc
Q 038861 1008 LHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYC--ENLKALPNCMHNLTSLLHLEIGWCRSL--VSFPEDGFPTNLE 1083 (1165)
Q Consensus 1008 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n--~~~~~~~~~~~~l~~L~~L~l~~n~~~--~~~p~~~~~~~L~ 1083 (1165)
+..|+.|.+.++..+.. ..+..+++|++|.++.| ....-++.....+++|+++++++|++. ..++....+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 33444444444443321 13444555666666655 333333333344466666666666552 1222224455566
Q ss_pred eEEEecCCCCCcc--cccccccCCCCcEEEE
Q 038861 1084 SLEVHDLKISKPL--FEWGLNKFSSLRELQI 1112 (1165)
Q Consensus 1084 ~L~l~~n~~~~~~--~~~~~~~l~~L~~L~l 1112 (1165)
.|++.+|.....- -...|.-+++|++|+-
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 6666666544210 1122444566666543
No 256
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.40 E-value=0.0083 Score=72.28 Aligned_cols=117 Identities=17% Similarity=0.194 Sum_probs=63.0
Q ss_pred CCchHHHHHHHHHHhcCCC---CCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDS---RADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSIL 77 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~---~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~ 77 (1165)
||.++.++.+...+..... ....+...+.++|++|+|||++|+.++.. .. ...+.++++....... +.
T Consensus 461 iGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~---~~~i~id~se~~~~~~----~~ 531 (758)
T PRK11034 461 FGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERHT----VS 531 (758)
T ss_pred eCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hC---CCcEEeechhhccccc----HH
Confidence 5788888888888863211 01223457899999999999999999853 22 2233444443222111 11
Q ss_pred HhccCCCCCCCCHHHHHHHHHHHhc-CceEEEEEeCCCCCCccchhhhhccc
Q 038861 78 MSISNVTVNDNDLNSLQEKLEKELI-KKKFLLVLDDMWNENYNDWELLNRPF 128 (1165)
Q Consensus 78 ~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~LlvlDdv~~~~~~~~~~l~~~~ 128 (1165)
+-++.+. .....+ ....+.+.++ ....+++||+++......+..+...+
T Consensus 532 ~LiG~~~-gyvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~l 581 (758)
T PRK11034 532 RLIGAPP-GYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVM 581 (758)
T ss_pred HHcCCCC-Cccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHH
Confidence 1122211 100101 1112223333 33469999999777665555554443
No 257
>PRK09354 recA recombinase A; Provisional
Probab=96.38 E-value=0.012 Score=63.30 Aligned_cols=85 Identities=16% Similarity=0.090 Sum_probs=56.0
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCC-----CCCCCCHHHHHHHH
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNV-----TVNDNDLNSLQEKL 97 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~l 97 (1165)
+.-+++-|+|++|+||||||.+++. .....-..++|++....++.. .++.++.. .......++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~--~~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 4567899999999999999998874 333445677888877766653 23333321 11234456666666
Q ss_pred HHHhc-CceEEEEEeCCC
Q 038861 98 EKELI-KKKFLLVLDDMW 114 (1165)
Q Consensus 98 ~~~l~-~~~~LlvlDdv~ 114 (1165)
...++ +..-+||+|-|.
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55554 456699999983
No 258
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.38 E-value=0.01 Score=64.85 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=21.3
Q ss_pred CcEEEEEEccCCchHHHHHHHHhC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+..++++.|++|+||||+|.+++.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999985
No 259
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.012 Score=69.38 Aligned_cols=153 Identities=18% Similarity=0.210 Sum_probs=85.4
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCC-----ceEEEEEcCCCCHHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFE-----IKAWTFVSEDFDVFRVTKS 75 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~-----~~~w~~~~~~~~~~~~~~~ 75 (1165)
|||++|+.++++-|..-.. + --.++|.+|||||++|.-++.. -+.+.-+ ..++ .. +
T Consensus 173 IGRd~EI~r~iqIL~RR~K-N-----NPvLiGEpGVGKTAIvEGLA~r-Iv~g~VP~~L~~~~i~-sL-----------D 233 (786)
T COG0542 173 IGRDEEIRRTIQILSRRTK-N-----NPVLVGEPGVGKTAIVEGLAQR-IVNGDVPESLKDKRIY-SL-----------D 233 (786)
T ss_pred cChHHHHHHHHHHHhccCC-C-----CCeEecCCCCCHHHHHHHHHHH-HhcCCCCHHHcCCEEE-Ee-----------c
Confidence 7999999999999976543 1 1367899999999998877742 2222221 1111 10 1
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHHhc-CceEEEEEeCCCCCC--------ccchhhhhcccCCCCCCcEEEEecCchH-
Q 038861 76 ILMSISNVTVNDNDLNSLQEKLEKELI-KKKFLLVLDDMWNEN--------YNDWELLNRPFKAGTSGSKIIVTTRNRV- 145 (1165)
Q Consensus 76 i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~LlvlDdv~~~~--------~~~~~~l~~~~~~~~~~~~iiiTtR~~~- 145 (1165)
+..-..+... ..+.++..+.+.+.++ ..++++.+|.++..- ..+...+..|-...+.--.|-.||-++-
T Consensus 234 ~g~LvAGaky-RGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYR 312 (786)
T COG0542 234 LGSLVAGAKY-RGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYR 312 (786)
T ss_pred HHHHhccccc-cCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHH
Confidence 1111112222 2344555555554443 458999999985410 1223333333333322223444554321
Q ss_pred --HHH---hhcccceeeCCCCCHHHHHHHHhhc
Q 038861 146 --VAE---RVGSVREYPLGELSKEDCLRVLTQH 173 (1165)
Q Consensus 146 --~~~---~~~~~~~~~l~~l~~~e~~~lf~~~ 173 (1165)
+.. --+..+.+.|.+.+.+++..+++-.
T Consensus 313 k~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 313 KYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 111 1135578999999999999998864
No 260
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.37 E-value=0.0028 Score=62.70 Aligned_cols=152 Identities=20% Similarity=0.121 Sum_probs=87.1
Q ss_pred CCccEEEEcCCCCchhhhhhccc-----Cccceeeeecccccc---cCC-------cccCCCCCCCEEEEeCCCCCcccc
Q 038861 962 QALKYLEVSYCSKLESLAERLDN-----TSLEVIAISYLENLK---SLP-------AGLHNLHHLQELKVYGCPNLESFP 1026 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~~~~~~~~-----~~L~~L~L~~n~~~~---~~p-------~~~~~l~~L~~L~L~~n~~~~~~~ 1026 (1165)
..++.+++|+|.+-+.-.+.... .+|++.+++.-.... .+| ..+-.||+|+..+||.|.+....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 56889999999876655444332 677777777632211 112 345567888888888887655444
Q ss_pred C----CCCCCCCcCeEEeecCCCCCcCCc--------------ccCCCCCCceeeeccCCCCcccCCC------CCCCCc
Q 038861 1027 E----GGLPSTKLTKLTIGYCENLKALPN--------------CMHNLTSLLHLEIGWCRSLVSFPED------GFPTNL 1082 (1165)
Q Consensus 1027 ~----~~~~l~~L~~L~L~~n~~~~~~~~--------------~~~~l~~L~~L~l~~n~~~~~~p~~------~~~~~L 1082 (1165)
+ .+...+.|+.|.+++|.+ +.+.. -..+-|.|++...+.|++- ..|.. ..-.+|
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~l 187 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENL 187 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCC-CccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCc
Confidence 3 344557788888887764 22211 1224456777777777662 22211 122467
Q ss_pred ceEEEecCCCCCc----ccccccccCCCCcEEEEecC
Q 038861 1083 ESLEVHDLKISKP----LFEWGLNKFSSLRELQITGG 1115 (1165)
Q Consensus 1083 ~~L~l~~n~~~~~----~~~~~~~~l~~L~~L~l~~n 1115 (1165)
+++.+..|.|.-. +.-.++.-+.+|+.|||..|
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN 224 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN 224 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeecccc
Confidence 7777777776521 11122344566666666655
No 261
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.35 E-value=0.013 Score=62.53 Aligned_cols=85 Identities=18% Similarity=0.098 Sum_probs=54.5
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCC-----CCCCCHHHHHHHH
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVT-----VNDNDLNSLQEKL 97 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 97 (1165)
+.-+++-|+|++|+||||||.+++.. ....-..++|++....++.. .++.++... ......++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45679999999999999999888743 33344567788766655542 233333211 1234456666666
Q ss_pred HHHhc-CceEEEEEeCCC
Q 038861 98 EKELI-KKKFLLVLDDMW 114 (1165)
Q Consensus 98 ~~~l~-~~~~LlvlDdv~ 114 (1165)
...++ +..-++|+|-+.
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55553 456799999883
No 262
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.34 E-value=0.017 Score=59.38 Aligned_cols=43 Identities=19% Similarity=0.107 Sum_probs=31.3
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCC
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDF 67 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~ 67 (1165)
....++.|+|.+|+||||+|.+++.. ....-..++|++....+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~ 59 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLS 59 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCC
Confidence 34679999999999999999998843 33334466787654444
No 263
>PHA02244 ATPase-like protein
Probab=96.33 E-value=0.019 Score=61.57 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=19.1
Q ss_pred EEEEEccCCchHHHHHHHHhC
Q 038861 27 VISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
-|.|+|++|+|||++|+++++
T Consensus 121 PVLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 378899999999999999985
No 264
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.32 E-value=0.027 Score=53.71 Aligned_cols=117 Identities=17% Similarity=0.095 Sum_probs=62.4
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCC---CCHHHHHHHHHHh---ccCC-CCCCCCH-------H
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSED---FDVFRVTKSILMS---ISNV-TVNDNDL-------N 91 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~---~~~~~~~~~i~~~---l~~~-~~~~~~~-------~ 91 (1165)
.+|-|++..|.||||.|..++. +...+-..++.+.+-.. ......+..+.-. .+.. .....+. .
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~--ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMAL--RALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 5788888899999999977763 34343334443333322 2333333332000 1110 0011111 1
Q ss_pred HHHHHHHHHhcC-ceEEEEEeCCCC---CCccchhhhhcccCCCCCCcEEEEecCch
Q 038861 92 SLQEKLEKELIK-KKFLLVLDDMWN---ENYNDWELLNRPFKAGTSGSKIIVTTRNR 144 (1165)
Q Consensus 92 ~~~~~l~~~l~~-~~~LlvlDdv~~---~~~~~~~~l~~~~~~~~~~~~iiiTtR~~ 144 (1165)
+.....++.+.. +-=++|||.+-. ....+.+.+...+...+++..||+|-|..
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 122233444443 445999999832 12233455666666677788999999986
No 265
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.29 E-value=0.039 Score=59.39 Aligned_cols=91 Identities=14% Similarity=0.108 Sum_probs=56.1
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCC-CHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHh
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDF-DVFRVTKSILMSISNVTVNDNDLNSLQEKLEKEL 101 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 101 (1165)
.+.++++|+|+.|+||||++..++.. ....-..+.+++..... ....-++..++.++.+.....+.+++...+...-
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 35789999999999999999988753 22222345666665432 2344455556656544333345566655554332
Q ss_pred -cCceEEEEEeCCCC
Q 038861 102 -IKKKFLLVLDDMWN 115 (1165)
Q Consensus 102 -~~~~~LlvlDdv~~ 115 (1165)
.+..-+|++|-...
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 13456888998844
No 266
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.27 E-value=0.036 Score=61.10 Aligned_cols=91 Identities=14% Similarity=0.067 Sum_probs=53.0
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchh--ccCCceEEEEEcCCC-CHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVR--RHFEIKAWTFVSEDF-DVFRVTKSILMSISNVTVNDNDLNSLQEKLEKE 100 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~--~~f~~~~w~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 100 (1165)
..++|.++|+.|+||||.+..++...... .+-..+..++..... ....-++..++.++.+.......+.+...+.+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 46799999999999999998887533222 122344455544321 222235555555655433334444554444443
Q ss_pred hcCceEEEEEeCCCCC
Q 038861 101 LIKKKFLLVLDDMWNE 116 (1165)
Q Consensus 101 l~~~~~LlvlDdv~~~ 116 (1165)
...-++++|.+...
T Consensus 253 --~~~DlVLIDTaGr~ 266 (388)
T PRK12723 253 --KDFDLVLVDTIGKS 266 (388)
T ss_pred --CCCCEEEEcCCCCC
Confidence 34568999988543
No 267
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.21 E-value=0.0034 Score=57.17 Aligned_cols=23 Identities=43% Similarity=0.473 Sum_probs=20.3
Q ss_pred EEEEEEccCCchHHHHHHHHhCC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
--|+|+||+|+||||+++.+++.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHH
Confidence 35899999999999999999853
No 268
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.036 Score=66.43 Aligned_cols=113 Identities=17% Similarity=0.145 Sum_probs=69.7
Q ss_pred CCchHHHHHHHHHHhcCCCCCCC--CcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSRADD--GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILM 78 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~--~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~ 78 (1165)
+|.++.+..|.+.+.....+... +.....+.|+.|+|||-||++++. .+-+..+..+-++.+.. .+ +.+
T Consensus 565 ~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse~------~e-vsk 635 (898)
T KOG1051|consen 565 IGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSEF------QE-VSK 635 (898)
T ss_pred cchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhhh------hh-hhh
Confidence 57888889999988765432222 466778899999999999999983 34444555555544432 22 333
Q ss_pred hccCCCCCCCCHHHHHHHHHHHhcCce-EEEEEeCCCCCCccchhhh
Q 038861 79 SISNVTVNDNDLNSLQEKLEKELIKKK-FLLVLDDMWNENYNDWELL 124 (1165)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~l~~~l~~~~-~LlvlDdv~~~~~~~~~~l 124 (1165)
.++.++ ..--.+....+-+.++.++ .+|+||||+..+......+
T Consensus 636 ligsp~--gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~l 680 (898)
T KOG1051|consen 636 LIGSPP--GYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNIL 680 (898)
T ss_pred ccCCCc--ccccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHH
Confidence 323221 1112233445666676666 4788999977665554433
No 269
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.19 E-value=0.036 Score=54.85 Aligned_cols=121 Identities=14% Similarity=0.116 Sum_probs=61.2
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEc--CCCCHHHHH------HHHHHhccCCCC-----CCCCH-
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVS--EDFDVFRVT------KSILMSISNVTV-----NDNDL- 90 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~--~~~~~~~~~------~~i~~~l~~~~~-----~~~~~- 90 (1165)
-.+++|.|+.|.|||||++.++-.. ....+.+++.-. ...+..... .++++.++.... ...+.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 3589999999999999999998532 223344433211 111222211 113343332211 11122
Q ss_pred HHHHHHHHHHhcCceEEEEEeCCCCC-CccchhhhhcccCCC-CC-CcEEEEecCchHHHH
Q 038861 91 NSLQEKLEKELIKKKFLLVLDDMWNE-NYNDWELLNRPFKAG-TS-GSKIIVTTRNRVVAE 148 (1165)
Q Consensus 91 ~~~~~~l~~~l~~~~~LlvlDdv~~~-~~~~~~~l~~~~~~~-~~-~~~iiiTtR~~~~~~ 148 (1165)
+...-.+.+.+...+-++++|+.... +....+.+...+... .. +..||++|.+.....
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 22222345566677889999988432 112222333322221 12 567888887766543
No 270
>PRK06762 hypothetical protein; Provisional
Probab=96.18 E-value=0.057 Score=52.63 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=20.7
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+.+|+|+|++|+||||+|+++..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999884
No 271
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.18 E-value=0.0092 Score=59.62 Aligned_cols=110 Identities=18% Similarity=0.153 Sum_probs=52.1
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH-h---
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKE-L--- 101 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l--- 101 (1165)
+++.|.|++|+||||+++.+... ....-..++++ ......... +....+.. .............. .
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~--~~~~g~~v~~~-apT~~Aa~~----L~~~~~~~---a~Ti~~~l~~~~~~~~~~~ 88 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEA--LEAAGKRVIGL-APTNKAAKE----LREKTGIE---AQTIHSFLYRIPNGDDEGR 88 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHH--HHHTT--EEEE-ESSHHHHHH----HHHHHTS----EEEHHHHTTEECCEECCSS
T ss_pred eEEEEEECCCCCHHHHHHHHHHH--HHhCCCeEEEE-CCcHHHHHH----HHHhhCcc---hhhHHHHHhcCCccccccc
Confidence 47899999999999999988743 22222223333 222222222 22222110 00110000000000 0
Q ss_pred --cCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCchHHH
Q 038861 102 --IKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRVVA 147 (1165)
Q Consensus 102 --~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~~~ 147 (1165)
..++-++|+|++.-.+...+..+...... .|+++|+.--..+..
T Consensus 89 ~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~QL~ 134 (196)
T PF13604_consen 89 PELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQLP 134 (196)
T ss_dssp CC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTSHH
T ss_pred ccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcchhc
Confidence 12334999999966555556666555443 578888877665443
No 272
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.17 E-value=0.051 Score=57.72 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhC
Q 038861 5 KDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 5 ~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+....+..++... +.|.|.|++|+||||+|++++.
T Consensus 52 ~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~ 86 (327)
T TIGR01650 52 ATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAA 86 (327)
T ss_pred HHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHH
Confidence 3445566666432 3489999999999999999985
No 273
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.17 E-value=0.042 Score=61.63 Aligned_cols=89 Identities=15% Similarity=0.105 Sum_probs=49.9
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCC-CCHHHHHHHHHHhccCCCCC---CCCHHHHHHHHH
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSED-FDVFRVTKSILMSISNVTVN---DNDLNSLQEKLE 98 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~ 98 (1165)
.++.+|.++|++|+||||.|..++.. ....-..+..++.... ....+.+..++..++.+... ..+.........
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~--L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARY--FKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 35789999999999999999998853 3322223444444321 22344455566666543221 122333333333
Q ss_pred HHhcCceEEEEEeCCC
Q 038861 99 KELIKKKFLLVLDDMW 114 (1165)
Q Consensus 99 ~~l~~~~~LlvlDdv~ 114 (1165)
+..++. -++|+|..-
T Consensus 171 ~~~~~~-DvVIIDTAG 185 (437)
T PRK00771 171 EKFKKA-DVIIVDTAG 185 (437)
T ss_pred HHhhcC-CEEEEECCC
Confidence 333343 578888873
No 274
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.0044 Score=70.07 Aligned_cols=103 Identities=21% Similarity=0.285 Sum_probs=59.3
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
+|.++-+++|.+++.-..-.+.-+.+++..+||+|||||++|+.++.. ....|. -+.++.-.|..++-..
T Consensus 414 Ygm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~A--LnRkFf---RfSvGG~tDvAeIkGH----- 483 (906)
T KOG2004|consen 414 YGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARA--LNRKFF---RFSVGGMTDVAEIKGH----- 483 (906)
T ss_pred cchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHH--hCCceE---EEeccccccHHhhccc-----
Confidence 477888899998886332224456789999999999999999999953 444442 2344444444332111
Q ss_pred cCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCC
Q 038861 81 SNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWN 115 (1165)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~ 115 (1165)
.... -..-+..+++.++.. +...-|+.+|.|+.
T Consensus 484 RRTY-VGAMPGkiIq~LK~v-~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 484 RRTY-VGAMPGKIIQCLKKV-KTENPLILIDEVDK 516 (906)
T ss_pred ceee-eccCChHHHHHHHhh-CCCCceEEeehhhh
Confidence 0000 111122233333332 33456888998843
No 275
>PRK14974 cell division protein FtsY; Provisional
Probab=96.16 E-value=0.031 Score=60.33 Aligned_cols=91 Identities=13% Similarity=0.106 Sum_probs=48.3
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCC--CHHHHHHHHHHhccCCCC---CCCCHHHH-HHH
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDF--DVFRVTKSILMSISNVTV---NDNDLNSL-QEK 96 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~--~~~~~~~~i~~~l~~~~~---~~~~~~~~-~~~ 96 (1165)
.++.+|+++|++|+||||++..++.. ....-..++.+... .+ ....-+...+..++.+.. ...+.... .+.
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~--l~~~g~~V~li~~D-t~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYY--LKKNGFSVVIAAGD-TFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCCeEEEecCC-cCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 34789999999999999988888743 32221233344322 22 222334555666654322 11222222 233
Q ss_pred HHHHhcCceEEEEEeCCCCC
Q 038861 97 LEKELIKKKFLLVLDDMWNE 116 (1165)
Q Consensus 97 l~~~l~~~~~LlvlDdv~~~ 116 (1165)
+...-....-++++|-+...
T Consensus 215 i~~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHHHhCCCCEEEEECCCcc
Confidence 33222222338999988543
No 276
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.16 E-value=0.03 Score=57.91 Aligned_cols=86 Identities=17% Similarity=0.174 Sum_probs=49.9
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceE-EEEEcCCC-CHHHHHHHHHHhccCC-------CCCCCCHHH----
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKA-WTFVSEDF-DVFRVTKSILMSISNV-------TVNDNDLNS---- 92 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~-w~~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 92 (1165)
..++|.|.+|+||||||+++++. ++.+|+..+ ++-+++.. .+.++.+.+...-... ..+.....+
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 45899999999999999999953 444555444 45555443 4455555554321110 111111111
Q ss_pred -HHHHHHHHh---cCceEEEEEeCC
Q 038861 93 -LQEKLEKEL---IKKKFLLVLDDM 113 (1165)
Q Consensus 93 -~~~~l~~~l---~~~~~LlvlDdv 113 (1165)
..-.+.+++ +++.+|+++||+
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 112233444 388999999998
No 277
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.12 E-value=0.025 Score=58.37 Aligned_cols=44 Identities=27% Similarity=0.453 Sum_probs=31.7
Q ss_pred chHHHHHHHHHHhc----CCCCCCCCcEEEEEEccCCchHHHHHHHHhC
Q 038861 3 RKKDKDEIVELLLR----DDSRADDGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 3 R~~~~~~l~~~l~~----~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
|++|++++...|.+ -.. ..++..+|+|.|+.|.|||||++.+..
T Consensus 8 ~~~~~~~~~~~l~~~~~~~~~-~~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 8 RDEEIEAVHKPLLRRLAALQA-EPQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred ChHhHHHHHHHHHHHHHHHHh-cCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 56666665554432 111 335678999999999999999998885
No 278
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.11 E-value=0.00038 Score=68.51 Aligned_cols=127 Identities=14% Similarity=0.052 Sum_probs=67.2
Q ss_pred cCCCCcCcceEEEEeeCCCCC--C--cCcCCCCCCceeEEeEcccCCCCCCC-----CCCCCCCCceeeecCCCCceEeC
Q 038861 565 MLKPYQDVQELTITGYGGPKF--P--IWLGDSSFSKLVRLKFEHCGTSTSLP-----SVGQLPFLKELVISGMGRVKSVG 635 (1165)
Q Consensus 565 ~l~~~~~L~~L~l~~~~~~~~--p--~~~~~~~~~~L~~L~L~~~~~~~~l~-----~l~~l~~L~~L~l~~~~~~~~~~ 635 (1165)
.++...+|+.+.+..|.+..- . ...+...+.+|+.|+|.+|.++..-. .+...+.|++|.+..|-....-.
T Consensus 180 ~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~ 259 (388)
T COG5238 180 LLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGV 259 (388)
T ss_pred HHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccH
Confidence 345556888888887764321 0 01111246778888888887653221 34455668888888874332211
Q ss_pred ccccCCCCccCCCCcceeeccccccccccccCC-CCCcccCcCCccceeeecCCcccc
Q 038861 636 SEFYGSSCSVPFPSLETLYFANMQEWEEWIPFG-SGQEVDEVFPKLRKLSLFSCSKLQ 692 (1165)
Q Consensus 636 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~~~~L~~L~l~~c~~l~ 692 (1165)
.++...-.-..+|+|..|.+.++..-.+.+... .....+..+|-|..|.+.+ |.++
T Consensus 260 ~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng-Nr~~ 316 (388)
T COG5238 260 KSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG-NRIK 316 (388)
T ss_pred HHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc-Ccch
Confidence 111111011237888888887765433322211 1111234567777777765 5554
No 279
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.10 E-value=0.017 Score=62.93 Aligned_cols=90 Identities=20% Similarity=0.115 Sum_probs=50.7
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcC-CCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhc
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSE-DFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELI 102 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 102 (1165)
...+++++|+.|+||||++.+++.....+.....+..++... .....+-++...+.++.+.....+..+....+. .+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~l~ 214 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-ELR 214 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-Hhc
Confidence 356899999999999999999985322221123445555333 223445555556666544332233333333333 344
Q ss_pred CceEEEEEeCCCC
Q 038861 103 KKKFLLVLDDMWN 115 (1165)
Q Consensus 103 ~~~~LlvlDdv~~ 115 (1165)
++ -++++|....
T Consensus 215 ~~-DlVLIDTaG~ 226 (374)
T PRK14722 215 NK-HMVLIDTIGM 226 (374)
T ss_pred CC-CEEEEcCCCC
Confidence 44 4566998843
No 280
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.10 E-value=0.018 Score=60.08 Aligned_cols=131 Identities=20% Similarity=0.286 Sum_probs=69.4
Q ss_pred chHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCc-chhccCCceEE----EEEcCCCC-----HHH-
Q 038861 3 RKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDD-RVRRHFEIKAW----TFVSEDFD-----VFR- 71 (1165)
Q Consensus 3 R~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~-~~~~~f~~~~w----~~~~~~~~-----~~~- 71 (1165)
|..+..--.++|.. +.+..|.+.|.+|.|||.||-++.-.. ..++.|..++. +.+++.-. -++
T Consensus 229 rn~eQ~~ALdlLld------~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeK 302 (436)
T COG1875 229 RNAEQRVALDLLLD------DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEK 302 (436)
T ss_pred ccHHHHHHHHHhcC------CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhh
Confidence 44444444566643 457899999999999999996654222 23445554442 11222110 011
Q ss_pred ---HHHHHH---HhccCCCCCCCCHHHHHHHH-H---------HHhcCc---eEEEEEeCCCCCCccchhhhhcccCCCC
Q 038861 72 ---VTKSIL---MSISNVTVNDNDLNSLQEKL-E---------KELIKK---KFLLVLDDMWNENYNDWELLNRPFKAGT 132 (1165)
Q Consensus 72 ---~~~~i~---~~l~~~~~~~~~~~~~~~~l-~---------~~l~~~---~~LlvlDdv~~~~~~~~~~l~~~~~~~~ 132 (1165)
-.+.+. +.+.... ... ++..+.+ . .+++++ ..++|+|.+.+-+..+...+ +...+
T Consensus 303 m~PWmq~i~DnLE~L~~~~--~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTi---ltR~G 376 (436)
T COG1875 303 MGPWMQAIFDNLEVLFSPN--EPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTI---LTRAG 376 (436)
T ss_pred ccchHHHHHhHHHHHhccc--ccc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHH---HHhcc
Confidence 111121 2221111 111 2222222 1 123444 46899999977665555444 44568
Q ss_pred CCcEEEEecCchH
Q 038861 133 SGSKIIVTTRNRV 145 (1165)
Q Consensus 133 ~~~~iiiTtR~~~ 145 (1165)
+|+||+.|.-..+
T Consensus 377 ~GsKIVl~gd~aQ 389 (436)
T COG1875 377 EGSKIVLTGDPAQ 389 (436)
T ss_pred CCCEEEEcCCHHH
Confidence 8999999987554
No 281
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.08 E-value=0.036 Score=57.85 Aligned_cols=50 Identities=20% Similarity=0.133 Sum_probs=35.8
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcchhc----cCCceEEEEEcCCCCHHHH
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRVRR----HFEIKAWTFVSEDFDVFRV 72 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~w~~~~~~~~~~~~ 72 (1165)
..-.++.|+|++|+|||++|.+++....... .-..++|++....++..++
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl 70 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL 70 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH
Confidence 3457999999999999999999874322221 1357889988776665444
No 282
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.06 E-value=0.038 Score=52.21 Aligned_cols=61 Identities=11% Similarity=0.287 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhcCceEEEEEeCCCC--CCccchhhhhcccCCCCCCcEEEEecCchHHHHhhc
Q 038861 91 NSLQEKLEKELIKKKFLLVLDDMWN--ENYNDWELLNRPFKAGTSGSKIIVTTRNRVVAERVG 151 (1165)
Q Consensus 91 ~~~~~~l~~~l~~~~~LlvlDdv~~--~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~~~~~~~ 151 (1165)
++..-.|.+.+-+++-+++-|.--. +....|+.+.-.-.-...|..|+++|-+..+.+.+.
T Consensus 142 EQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 3334456666778888999995411 112334433222122346899999999998887664
No 283
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.11 Score=51.04 Aligned_cols=164 Identities=17% Similarity=0.127 Sum_probs=87.8
Q ss_pred CCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH-
Q 038861 22 DDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKE- 100 (1165)
Q Consensus 22 ~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~- 100 (1165)
-.+++=|.++|++|.|||-||++|+++. .+.|+.++.. ++.+.... +..+.+++.
T Consensus 178 IaQPKGvlLygppgtGktLlaraVahht-------~c~firvsgs----elvqk~ig-------------egsrmvrelf 233 (404)
T KOG0728|consen 178 IAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGS----ELVQKYIG-------------EGSRMVRELF 233 (404)
T ss_pred CCCCcceEEecCCCCchhHHHHHHHhhc-------ceEEEEechH----HHHHHHhh-------------hhHHHHHHHH
Confidence 3456778999999999999999999641 2334555432 22222211 111222221
Q ss_pred ---hcCceEEEEEeCCCCCCcc--------c------hhhhhcccCC--CCCCcEEEEecCchHHHHhh-----ccccee
Q 038861 101 ---LIKKKFLLVLDDMWNENYN--------D------WELLNRPFKA--GTSGSKIIVTTRNRVVAERV-----GSVREY 156 (1165)
Q Consensus 101 ---l~~~~~LlvlDdv~~~~~~--------~------~~~l~~~~~~--~~~~~~iiiTtR~~~~~~~~-----~~~~~~ 156 (1165)
-.+-+-+|.+|.+++.... + .-.+...+.. ..++-+||.+|..-++.+.. ..+..+
T Consensus 234 vmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrki 313 (404)
T KOG0728|consen 234 VMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKI 313 (404)
T ss_pred HHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccc
Confidence 1356789999988553110 0 1112222322 23567888877665544321 234678
Q ss_pred eCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHhh
Q 038861 157 PLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLGGL 210 (1165)
Q Consensus 157 ~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~ 210 (1165)
+.++-+++.-.++++-+.....- ...-+++.+|+++....|.---++.+-|++
T Consensus 314 efp~p~e~ar~~ilkihsrkmnl-~rgi~l~kiaekm~gasgaevk~vcteagm 366 (404)
T KOG0728|consen 314 EFPPPNEEARLDILKIHSRKMNL-TRGINLRKIAEKMPGASGAEVKGVCTEAGM 366 (404)
T ss_pred cCCCCCHHHHHHHHHHhhhhhch-hcccCHHHHHHhCCCCccchhhhhhhhhhH
Confidence 88888888878887766432221 112234455555444334334444444443
No 284
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.05 E-value=0.034 Score=62.63 Aligned_cols=88 Identities=18% Similarity=0.069 Sum_probs=48.4
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCC-HHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFD-VFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIK 103 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 103 (1165)
.+++.++|++|+||||++..++...........+..++...... ....+....+.++.+.....+..+....+.+ +.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC-
Confidence 46899999999999999988774322112233555666543211 1222333344444333233344455555543 23
Q ss_pred ceEEEEEeCCC
Q 038861 104 KKFLLVLDDMW 114 (1165)
Q Consensus 104 ~~~LlvlDdv~ 114 (1165)
..-++++|...
T Consensus 299 ~~DlVlIDt~G 309 (424)
T PRK05703 299 DCDVILIDTAG 309 (424)
T ss_pred CCCEEEEeCCC
Confidence 35688899763
No 285
>PRK05439 pantothenate kinase; Provisional
Probab=96.04 E-value=0.041 Score=58.44 Aligned_cols=80 Identities=19% Similarity=0.074 Sum_probs=44.0
Q ss_pred CCCcEEEEEEccCCchHHHHHHHHhCCcchhcc--CCceEEEEEcCCCCHHHHHHHHHHhcc--CCCCCCCCHHHHHHHH
Q 038861 22 DDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRH--FEIKAWTFVSEDFDVFRVTKSILMSIS--NVTVNDNDLNSLQEKL 97 (1165)
Q Consensus 22 ~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~--f~~~~w~~~~~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~l 97 (1165)
.+.+-+|+|.|.+|+||||+|+.+... .... ...+..+....-.-....+.. ..+. ...++..+.+.+...+
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~--l~~~~~~~~v~vi~~DdFy~~~~~l~~--~~l~~~kg~Pes~D~~~l~~~L 158 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQAL--LSRWPEHPKVELVTTDGFLYPNAVLEE--RGLMKRKGFPESYDMRALLRFL 158 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH--HHhhCCCCceEEEeccccccCHHHHhh--hhccccCCCcccccHHHHHHHH
Confidence 346789999999999999999988742 2221 123334444433322222221 1111 1123345666666666
Q ss_pred HHHhcCce
Q 038861 98 EKELIKKK 105 (1165)
Q Consensus 98 ~~~l~~~~ 105 (1165)
.+...++.
T Consensus 159 ~~Lk~G~~ 166 (311)
T PRK05439 159 SDVKSGKP 166 (311)
T ss_pred HHHHcCCC
Confidence 66655554
No 286
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.03 E-value=0.0074 Score=67.17 Aligned_cols=40 Identities=20% Similarity=0.284 Sum_probs=35.4
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCC
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
+||++.++.+...+..+.. |.|.|++|+|||++|+.+...
T Consensus 23 ~gre~vI~lll~aalag~h--------VLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 23 YERSHAIRLCLLAALSGES--------VFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred cCcHHHHHHHHHHHccCCC--------EEEECCCChhHHHHHHHHHHH
Confidence 6999999999998877654 899999999999999999853
No 287
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.00 E-value=0.032 Score=54.62 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.1
Q ss_pred cEEEEEEccCCchHHHHHHHHhCC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
-.+++|.|+.|.|||||++.++--
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 358999999999999999999753
No 288
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.95 E-value=0.031 Score=62.91 Aligned_cols=89 Identities=19% Similarity=0.100 Sum_probs=46.5
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCC-CHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhc
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDF-DVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELI 102 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 102 (1165)
...+|+|+|++|+||||++..++.....+.....+..++..... .....+......++.......+...+...+++ +.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~-l~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER-LR 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH-hc
Confidence 35789999999999999998887422222112334445443211 12222333333333322222333444444433 33
Q ss_pred CceEEEEEeCCC
Q 038861 103 KKKFLLVLDDMW 114 (1165)
Q Consensus 103 ~~~~LlvlDdv~ 114 (1165)
+ .-+|++|..-
T Consensus 428 ~-~DLVLIDTaG 438 (559)
T PRK12727 428 D-YKLVLIDTAG 438 (559)
T ss_pred c-CCEEEecCCC
Confidence 3 4588889874
No 289
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.95 E-value=0.01 Score=62.86 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=23.5
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCC
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
..++.++|||++|.|||.+|++++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999964
No 290
>PRK08233 hypothetical protein; Provisional
Probab=95.95 E-value=0.02 Score=57.06 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=21.5
Q ss_pred cEEEEEEccCCchHHHHHHHHhCC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
..+|+|.|++|+||||+|+.++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999854
No 291
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.94 E-value=0.025 Score=58.77 Aligned_cols=87 Identities=18% Similarity=0.086 Sum_probs=53.7
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCC------------------
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVT------------------ 84 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~------------------ 84 (1165)
+...++.|+|.+|+|||++|.++... ....-..++|++... ++.++.+.+ .+++-..
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~--~~~~g~~~~y~~~e~--~~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYG--ALKQGKKVYVITTEN--TSKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHH--HHhCCCEEEEEEcCC--CHHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 35678999999999999999998642 223445777888754 344554443 2222100
Q ss_pred --CCCCCHHHHHHHHHHHhcC-ceEEEEEeCCC
Q 038861 85 --VNDNDLNSLQEKLEKELIK-KKFLLVLDDMW 114 (1165)
Q Consensus 85 --~~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~ 114 (1165)
....+.++....+.+.++. +.-++|+|.+.
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335566666666653 55689999874
No 292
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.054 Score=53.35 Aligned_cols=46 Identities=24% Similarity=0.231 Sum_probs=34.0
Q ss_pred CchHHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCchHHHHHHHHhC
Q 038861 2 GRKKDKDEIVELLLRDDS-------RADDGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 2 GR~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
|-+++++++++.+.-... -+-..++=|..||++|.|||-+|++.+.
T Consensus 175 GldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAa 227 (424)
T KOG0652|consen 175 GLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAA 227 (424)
T ss_pred cHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHH
Confidence 567888888887752111 1234566789999999999999999884
No 293
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.93 E-value=0.0048 Score=61.45 Aligned_cols=105 Identities=15% Similarity=0.108 Sum_probs=71.8
Q ss_pred EEEEecCCcccccCcccccccccccccccceeEeccCCCccccCCcCceEecCC--CCccccchhhcCCCCcceEEEcCC
Q 038861 725 ELQIKGCKRVVLSSPMDLSSLKSVLLGEMANEVISGCPQLLSLVTEDDLELSNC--KGLTKLPQALLTLSSLRELRISGC 802 (1165)
Q Consensus 725 ~L~l~~~~~l~~~~~~~~~~l~~l~~~~l~~~~i~~~~~l~~l~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~ 802 (1165)
.+.+.+|.........-...+..+..+++.+..++.+.++..+++|++|.++.| .....++.....+|+|++|++++|
T Consensus 22 ~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 22 ELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred hhhcchhhhcCCCcccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 334444443333334444455556667777777788888888999999999999 555666656667799999999999
Q ss_pred CCc--cccCCCCCcccccEEEeccCCCCC
Q 038861 803 ASL--VSFPQAALPSQLRTFKIEHCNALE 829 (1165)
Q Consensus 803 ~~l--~~~~~~~~~~~L~~L~l~~~~~~~ 829 (1165)
.+. .++.+...+.+|..|++.+|....
T Consensus 102 ki~~lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 102 KIKDLSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred ccccccccchhhhhcchhhhhcccCCccc
Confidence 653 344455556778888888887443
No 294
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.92 E-value=0.04 Score=61.63 Aligned_cols=91 Identities=12% Similarity=0.076 Sum_probs=47.3
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCC-CCHHHHHHHHHHhccCCCC---CCCCHHHHHHHHH
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSED-FDVFRVTKSILMSISNVTV---NDNDLNSLQEKLE 98 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~ 98 (1165)
.++.++.++|++|+||||.|..++.....+.. ..+..+++... ....+-+.......+.+.. ...++........
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g-~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQG-KKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCC-CeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 34789999999999999999888743211122 23344444321 1222333344444443221 1223444443333
Q ss_pred HHhcCceE-EEEEeCCC
Q 038861 99 KELIKKKF-LLVLDDMW 114 (1165)
Q Consensus 99 ~~l~~~~~-LlvlDdv~ 114 (1165)
+....+.+ ++|+|-.-
T Consensus 176 ~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHhcCCCEEEEeCCC
Confidence 33333333 78888774
No 295
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.91 E-value=0.051 Score=51.24 Aligned_cols=105 Identities=22% Similarity=0.257 Sum_probs=54.7
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCce
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKKK 105 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 105 (1165)
.+++|.|+.|.|||||++.+..... ...+.+|+... ..+.-.. +-..-+...-.+.+.+..++
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~-------------~~i~~~~-~lS~G~~~rv~laral~~~p 89 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGST-------------VKIGYFE-QLSGGEKMRLALAKLLLENP 89 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCe-------------EEEEEEc-cCCHHHHHHHHHHHHHhcCC
Confidence 5899999999999999999975321 22333443210 0000000 01111222223455566677
Q ss_pred EEEEEeCCCCC-CccchhhhhcccCCCCCCcEEEEecCchHHHHh
Q 038861 106 FLLVLDDMWNE-NYNDWELLNRPFKAGTSGSKIIVTTRNRVVAER 149 (1165)
Q Consensus 106 ~LlvlDdv~~~-~~~~~~~l~~~~~~~~~~~~iiiTtR~~~~~~~ 149 (1165)
-++++|+.... +......+...+... +..||++|.+.+....
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 79999988432 112223333333222 2457777777655433
No 296
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.90 E-value=0.0025 Score=37.12 Aligned_cols=21 Identities=38% Similarity=0.803 Sum_probs=12.7
Q ss_pred cccccccCCCCccccCccccc
Q 038861 412 HLRFLNLSGTNIQILPESINS 432 (1165)
Q Consensus 412 ~Lr~L~L~~~~i~~lp~~~~~ 432 (1165)
+|++|||++|+++.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666665543
No 297
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.89 E-value=0.0063 Score=68.52 Aligned_cols=47 Identities=21% Similarity=0.398 Sum_probs=37.9
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhC
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+|-++.+++|++.|.......+.+-+++.++||+|+||||||+.++.
T Consensus 79 yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 79 YGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 58899999999999433222334567999999999999999999985
No 298
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.89 E-value=0.011 Score=55.33 Aligned_cols=36 Identities=31% Similarity=0.186 Sum_probs=26.9
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEE
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTF 62 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~ 62 (1165)
..+|+|+|.+|.||||||+++.. +....-..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 46899999999999999999984 4544445555554
No 299
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.88 E-value=0.036 Score=54.07 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=27.6
Q ss_pred EEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCC
Q 038861 27 VISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDF 67 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~ 67 (1165)
++.|+|++|+||||+|.+++.. ....-..++|+......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcch
Confidence 3689999999999999999753 22233456676665443
No 300
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.86 E-value=0.044 Score=54.08 Aligned_cols=23 Identities=43% Similarity=0.680 Sum_probs=20.6
Q ss_pred EEEEEEccCCchHHHHHHHHhCC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
.+++|.|+.|.|||||++.++-.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 47999999999999999999753
No 301
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.077 Score=59.34 Aligned_cols=131 Identities=14% Similarity=0.147 Sum_probs=74.2
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCc
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKK 104 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 104 (1165)
+.=|.+||++|.|||-||++|++. .+.. |+.+... +++...+. .+.......+.+.-...
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANE--ag~N-----FisVKGP----ELlNkYVG---------ESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANE--AGAN-----FISVKGP----ELLNKYVG---------ESERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhh--ccCc-----eEeecCH----HHHHHHhh---------hHHHHHHHHHHHhhcCC
Confidence 344899999999999999999975 3333 3444332 22222211 11222223333444567
Q ss_pred eEEEEEeCCCCCCc-----cc------hhhhhcccCCC--CCCcEEEEecCchHHHHh-h----cccceeeCCCCCHHHH
Q 038861 105 KFLLVLDDMWNENY-----ND------WELLNRPFKAG--TSGSKIIVTTRNRVVAER-V----GSVREYPLGELSKEDC 166 (1165)
Q Consensus 105 ~~LlvlDdv~~~~~-----~~------~~~l~~~~~~~--~~~~~iiiTtR~~~~~~~-~----~~~~~~~l~~l~~~e~ 166 (1165)
+++|.||.++.--. .. ..++...+... ..|.-||-.|-.+++... + +-.+..-|+.-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 99999999944110 11 22333333332 346667766665554332 1 1234566777888888
Q ss_pred HHHHhhccc
Q 038861 167 LRVLTQHSL 175 (1165)
Q Consensus 167 ~~lf~~~~~ 175 (1165)
.++++..+-
T Consensus 685 ~~ILK~~tk 693 (802)
T KOG0733|consen 685 VAILKTITK 693 (802)
T ss_pred HHHHHHHhc
Confidence 888887754
No 302
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.16 Score=55.34 Aligned_cols=154 Identities=14% Similarity=0.073 Sum_probs=78.1
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCce
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKKK 105 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 105 (1165)
|=-.++||||.|||+++.++++... |+ ++=...+...+-.+ ++.++.. ...+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----yd-IydLeLt~v~~n~d-Lr~LL~~----------------------t~~k 287 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YD-IYDLELTEVKLDSD-LRHLLLA----------------------TPNK 287 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----Cc-eEEeeeccccCcHH-HHHHHHh----------------------CCCC
Confidence 3357899999999999999986422 22 11222222222111 2222211 1345
Q ss_pred EEEEEeCCCCC------Cc------------cchhhhhcccCCC--CC-CcEEEE-ecCchHHHHh--h--c-ccceeeC
Q 038861 106 FLLVLDDMWNE------NY------------NDWELLNRPFKAG--TS-GSKIIV-TTRNRVVAER--V--G-SVREYPL 158 (1165)
Q Consensus 106 ~LlvlDdv~~~------~~------------~~~~~l~~~~~~~--~~-~~~iii-TtR~~~~~~~--~--~-~~~~~~l 158 (1165)
-+||+.|++-. .. ..+.-+...+... .. +-|||| ||-..+-.+. + + -+-.+.+
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence 67778877432 00 0111122222221 12 235555 6665542221 1 1 2235677
Q ss_pred CCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHhhhcCC
Q 038861 159 GELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLGGLLRGK 214 (1165)
Q Consensus 159 ~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~ 214 (1165)
.-=+.+.-..|+........ ++ .+..+|.+...|.-+.=..++..|-.+
T Consensus 368 gyCtf~~fK~La~nYL~~~~---~h----~L~~eie~l~~~~~~tPA~V~e~lm~~ 416 (457)
T KOG0743|consen 368 GYCTFEAFKTLASNYLGIEE---DH----RLFDEIERLIEETEVTPAQVAEELMKN 416 (457)
T ss_pred CCCCHHHHHHHHHHhcCCCC---Cc----chhHHHHHHhhcCccCHHHHHHHHhhc
Confidence 77888888888887753322 22 455666665566555555555555443
No 303
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.82 E-value=0.063 Score=57.46 Aligned_cols=53 Identities=25% Similarity=0.179 Sum_probs=35.3
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHh
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMS 79 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~ 79 (1165)
...++.|.|.+|+||||++.+++... ...+-..++|++... +..++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~-~~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDL-ITQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-HHhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 34588999999999999999887532 122245677877654 345555555443
No 304
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.80 E-value=0.038 Score=53.47 Aligned_cols=118 Identities=18% Similarity=0.059 Sum_probs=64.7
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCC---CHHHHHHHHH--Hh--ccCC-CCCCCCHH-----
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDF---DVFRVTKSIL--MS--ISNV-TVNDNDLN----- 91 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~---~~~~~~~~i~--~~--l~~~-~~~~~~~~----- 91 (1165)
...|.|+|..|-||||.|..++ .+...+-..+..+.+-... +....+..+- .. .+.. .....+.+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a--~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMA--LRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHH--HHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 3579999999999999997776 3444444444444444332 3333333320 00 0111 01111111
Q ss_pred --HHHHHHHHHhc-CceEEEEEeCCCC---CCccchhhhhcccCCCCCCcEEEEecCch
Q 038861 92 --SLQEKLEKELI-KKKFLLVLDDMWN---ENYNDWELLNRPFKAGTSGSKIIVTTRNR 144 (1165)
Q Consensus 92 --~~~~~l~~~l~-~~~~LlvlDdv~~---~~~~~~~~l~~~~~~~~~~~~iiiTtR~~ 144 (1165)
+.....++.+. ++-=++|||.+-. ....+.+.+...+...+++..||+|-|..
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 12223344444 3445999999832 12234456666666677788999999985
No 305
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.78 E-value=0.073 Score=51.70 Aligned_cols=116 Identities=12% Similarity=0.050 Sum_probs=56.1
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcch-hcc--CCc---eEEEEEcCCCC--HHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRV-RRH--FEI---KAWTFVSEDFD--VFRVTKSILMSISNVTVNDNDLNSLQEK 96 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~-~~~--f~~---~~w~~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 96 (1165)
-.+++|.|+.|.|||||++.+.-.... .+. ++. +.++ .+... ...+...+... ....-..-+...-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~ 101 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLA 101 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CCCCCCHHHHHHHH
Confidence 348999999999999999999754221 110 111 1121 22211 11222222210 11111222223334
Q ss_pred HHHHhcCceEEEEEeCCCCC-CccchhhhhcccCCCCCCcEEEEecCchHHH
Q 038861 97 LEKELIKKKFLLVLDDMWNE-NYNDWELLNRPFKAGTSGSKIIVTTRNRVVA 147 (1165)
Q Consensus 97 l~~~l~~~~~LlvlDdv~~~-~~~~~~~l~~~~~~~~~~~~iiiTtR~~~~~ 147 (1165)
+.+.+..++-++++|+-... +......+...+... +..||++|.+....
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 45566677788999987332 111122222222222 35577777776554
No 306
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.78 E-value=0.038 Score=58.18 Aligned_cols=90 Identities=14% Similarity=0.172 Sum_probs=49.5
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCH--HHHHHHHHHhccCCCC---CCCCH-HHHHHH
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDV--FRVTKSILMSISNVTV---NDNDL-NSLQEK 96 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~--~~~~~~i~~~l~~~~~---~~~~~-~~~~~~ 96 (1165)
.+.+++.++|++|+||||.+..++.. ....-..+.+++... +.. .+-+....+..+.... ...+. ....+.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 45789999999999999999888743 333333455565443 222 2233334444432211 11222 222333
Q ss_pred HHHHhcCceEEEEEeCCCC
Q 038861 97 LEKELIKKKFLLVLDDMWN 115 (1165)
Q Consensus 97 l~~~l~~~~~LlvlDdv~~ 115 (1165)
+.....+..-++++|-.-.
T Consensus 147 l~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHHCCCCEEEEeCCCC
Confidence 4444444456888998743
No 307
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.73 E-value=0.046 Score=56.82 Aligned_cols=90 Identities=22% Similarity=0.144 Sum_probs=56.7
Q ss_pred CCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCC-CCCCCHHHHHH---HH
Q 038861 22 DDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVT-VNDNDLNSLQE---KL 97 (1165)
Q Consensus 22 ~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~---~l 97 (1165)
-+..+++=|+|+.|.||||+|.+++- .....-..++|++.-..+++..+..-....+..-. ....+.++... .+
T Consensus 57 l~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 57 LPRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred cccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 35678999999999999999988873 34444557899998888888765443322122111 12333333333 33
Q ss_pred HHHhcCceEEEEEeCC
Q 038861 98 EKELIKKKFLLVLDDM 113 (1165)
Q Consensus 98 ~~~l~~~~~LlvlDdv 113 (1165)
.+....+--|+|+|.+
T Consensus 135 ~~~~~~~i~LvVVDSv 150 (279)
T COG0468 135 ARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHhccCCCCEEEEecC
Confidence 3333334569999988
No 308
>PRK10867 signal recognition particle protein; Provisional
Probab=95.73 E-value=0.031 Score=62.48 Aligned_cols=89 Identities=17% Similarity=0.168 Sum_probs=46.6
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcchhcc-CCceEEEEEcCCCCH--HHHHHHHHHhccCCCC---CCCCHHHHHHH
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRVRRH-FEIKAWTFVSEDFDV--FRVTKSILMSISNVTV---NDNDLNSLQEK 96 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~w~~~~~~~~~--~~~~~~i~~~l~~~~~---~~~~~~~~~~~ 96 (1165)
.++.+|.++|++|+||||.|..++.. .... -..+..+.... +.+ .+-++..+...+.+.. ...++..+...
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~--l~~~~G~kV~lV~~D~-~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~ 174 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKY--LKKKKKKKVLLVAADV-YRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKA 174 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHH--HHHhcCCcEEEEEccc-cchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHH
Confidence 44789999999999999998888743 3222 22344444432 222 2233344454443211 12234444433
Q ss_pred HHHHhcCc-eEEEEEeCCC
Q 038861 97 LEKELIKK-KFLLVLDDMW 114 (1165)
Q Consensus 97 l~~~l~~~-~~LlvlDdv~ 114 (1165)
..+..+.+ .-++|+|-.-
T Consensus 175 a~~~a~~~~~DvVIIDTaG 193 (433)
T PRK10867 175 ALEEAKENGYDVVIVDTAG 193 (433)
T ss_pred HHHHHHhcCCCEEEEeCCC
Confidence 33333333 3377777663
No 309
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.71 E-value=0.025 Score=55.67 Aligned_cols=25 Identities=36% Similarity=0.514 Sum_probs=22.5
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhC
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.++.+|+|.|.+|.||||+|+.++.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~ 30 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE 30 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH
Confidence 4568999999999999999999984
No 310
>PRK07667 uridine kinase; Provisional
Probab=95.71 E-value=0.023 Score=56.79 Aligned_cols=37 Identities=19% Similarity=0.414 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhC
Q 038861 7 KDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 7 ~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+++.+.+.... +...+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 456666665433 3448999999999999999999985
No 311
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.70 E-value=0.043 Score=53.95 Aligned_cols=87 Identities=16% Similarity=0.129 Sum_probs=43.5
Q ss_pred EEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCC-CHHHHHHHHHHhccCCC---CCCCCHHHHH-HHHHHHh
Q 038861 27 VISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDF-DVFRVTKSILMSISNVT---VNDNDLNSLQ-EKLEKEL 101 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~-~~~~~~~~i~~~l~~~~---~~~~~~~~~~-~~l~~~l 101 (1165)
++.+.|++|+||||++..++.. ....-..++.+...... ...+.+...+...+... ....+..+.. +.+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~--~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY--LKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999888743 32222233344433221 22233333333333211 1222333333 3333333
Q ss_pred cCceEEEEEeCCCC
Q 038861 102 IKKKFLLVLDDMWN 115 (1165)
Q Consensus 102 ~~~~~LlvlDdv~~ 115 (1165)
.+..-++|+|....
T Consensus 80 ~~~~d~viiDt~g~ 93 (173)
T cd03115 80 EENFDVVIVDTAGR 93 (173)
T ss_pred hCCCCEEEEECccc
Confidence 44444666887643
No 312
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.69 E-value=0.0044 Score=73.87 Aligned_cols=126 Identities=23% Similarity=0.137 Sum_probs=85.6
Q ss_pred CCcCeEEeecCCCCCcC-Cccc-CCCCCCceeeeccCCCCcc-cCCC-CCCCCcceEEEecCCCCCcccccccccCCCCc
Q 038861 1033 TKLTKLTIGYCENLKAL-PNCM-HNLTSLLHLEIGWCRSLVS-FPED-GFPTNLESLEVHDLKISKPLFEWGLNKFSSLR 1108 (1165)
Q Consensus 1033 ~~L~~L~L~~n~~~~~~-~~~~-~~l~~L~~L~l~~n~~~~~-~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 1108 (1165)
.+|+.|+++|......- |..+ .-||+|+.|.+++-.+... +... .++++|..||+|+.++... .++.++.+|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence 68999999996543211 1122 4689999999988665322 1122 6899999999999999753 4688899999
Q ss_pred EEEEecCCCCccc---CCCCCCcccEEEecCCCCcccH------HHhhhcCCccceEeecCC
Q 038861 1109 ELQITGGCPVLLS---SPWFPASLTVLHISYMPNLESL------SLIVENLTSLEILILCKC 1161 (1165)
Q Consensus 1109 ~L~l~~n~~~~~~---~~~~~~~L~~L~l~~~~~l~~l------~~~~~~l~~L~~L~l~~c 1161 (1165)
.|.+.+-...... .---+++|+.||+|.-.+...- -.....+|.|+.||.|+-
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 9988752222100 0012679999999996554322 133456999999999874
No 313
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.69 E-value=0.0047 Score=59.76 Aligned_cols=42 Identities=26% Similarity=0.128 Sum_probs=29.7
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchh-ccCCceEEEEEcCCCC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVR-RHFEIKAWTFVSEDFD 68 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~w~~~~~~~~ 68 (1165)
..++.+.|+.|+|||.+|++++. ... +.....+-++++.-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccc
Confidence 46789999999999999999984 333 3444555566554433
No 314
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.68 E-value=0.025 Score=50.70 Aligned_cols=71 Identities=18% Similarity=0.175 Sum_probs=40.5
Q ss_pred EEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCceE
Q 038861 27 VISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKKKF 106 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 106 (1165)
-|.|+|.+|+||||+|.+++.. .. .-|+.+++-..-..++...=.+. ....-+.+.+.+.+...+.+..+
T Consensus 9 NILvtGTPG~GKstl~~~lae~----~~---~~~i~isd~vkEn~l~~gyDE~y---~c~i~DEdkv~D~Le~~m~~Gg~ 78 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEK----TG---LEYIEISDLVKENNLYEGYDEEY---KCHILDEDKVLDELEPLMIEGGN 78 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHH----hC---CceEehhhHHhhhcchhcccccc---cCccccHHHHHHHHHHHHhcCCc
Confidence 4899999999999999999832 11 22566654332222222221111 11234556667777766655444
Q ss_pred E
Q 038861 107 L 107 (1165)
Q Consensus 107 L 107 (1165)
+
T Consensus 79 I 79 (176)
T KOG3347|consen 79 I 79 (176)
T ss_pred E
Confidence 3
No 315
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.68 E-value=0.018 Score=57.69 Aligned_cols=110 Identities=17% Similarity=0.195 Sum_probs=55.8
Q ss_pred EEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCceE
Q 038861 27 VISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKKKF 106 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 106 (1165)
+|.|.|+.|.||||++..+... ........++.... ... ..... ...+-.......+.....+.++..++..+=
T Consensus 3 lilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~e~-~~E--~~~~~-~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd 76 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTIED-PIE--FVHES-KRSLINQREVGLDTLSFENALKAALRQDPD 76 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEEcC-Ccc--ccccC-ccceeeecccCCCccCHHHHHHHHhcCCcC
Confidence 7899999999999999887743 22233334443222 111 00000 000000000011223355667777777788
Q ss_pred EEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCchHHH
Q 038861 107 LLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRVVA 147 (1165)
Q Consensus 107 LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~~~ 147 (1165)
++++|++.+. +.+...... ...|..++.|+-...+.
T Consensus 77 ~ii~gEird~--e~~~~~l~~---a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 77 VILVGEMRDL--ETIRLALTA---AETGHLVMSTLHTNSAA 112 (198)
T ss_pred EEEEcCCCCH--HHHHHHHHH---HHcCCEEEEEecCCcHH
Confidence 9999999443 333322222 22355566666544433
No 316
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.022 Score=64.53 Aligned_cols=72 Identities=21% Similarity=0.198 Sum_probs=44.9
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCC--CHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhc
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDF--DVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELI 102 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 102 (1165)
..-|.|.|+.|+|||+||+++++... +.....+.+++++.-. ..+.+++. +...+.+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~-----------------l~~vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKF-----------------LNNVFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHH-----------------HHHHHHHHHh
Confidence 34689999999999999999997544 3344344455554321 11111111 1122345567
Q ss_pred CceEEEEEeCCC
Q 038861 103 KKKFLLVLDDMW 114 (1165)
Q Consensus 103 ~~~~LlvlDdv~ 114 (1165)
..+-+|||||++
T Consensus 493 ~~PSiIvLDdld 504 (952)
T KOG0735|consen 493 YAPSIIVLDDLD 504 (952)
T ss_pred hCCcEEEEcchh
Confidence 789999999994
No 317
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.66 E-value=0.031 Score=60.07 Aligned_cols=58 Identities=17% Similarity=0.182 Sum_probs=40.4
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcchh----ccCCceEEEEEcCCCCHHHHHHHHHHhcc
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRVR----RHFEIKAWTFVSEDFDVFRVTKSILMSIS 81 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~w~~~~~~~~~~~~~~~i~~~l~ 81 (1165)
..-+++-|+|++|+|||+++.+++-..... ..-..++|++....++++++.+ +++.++
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g 155 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFG 155 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 345788999999999999998876321111 1224678999888888887754 455543
No 318
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.64 E-value=0.038 Score=56.05 Aligned_cols=52 Identities=17% Similarity=0.277 Sum_probs=32.5
Q ss_pred HHHHHhcCceEEEEEeCCCC----CCccchhhhhcccCCCCCCcEEEEecCchHHHHh
Q 038861 96 KLEKELIKKKFLLVLDDMWN----ENYNDWELLNRPFKAGTSGSKIIVTTRNRVVAER 149 (1165)
Q Consensus 96 ~l~~~l~~~~~LlvlDdv~~----~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~~~~~ 149 (1165)
.+.+.|..++=+++||.-.. ......-.+...+.. .|..|+++|-+-.....
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~--eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ--EGKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCcHHhHh
Confidence 35577888889999997522 222333334444443 38889999988754443
No 319
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.64 E-value=0.036 Score=53.63 Aligned_cols=116 Identities=16% Similarity=0.089 Sum_probs=58.0
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCC--CCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSED--FDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIK 103 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 103 (1165)
.+++|.|+.|.|||||.+.++-.. ....+.+++..... .+..... .+.++.. .+-..-+...-.+.+.+-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~-~qLS~G~~qrl~laral~~ 99 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDAR---RAGIAMV-YQLSVGERQMVEIARALAR 99 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHH---hcCeEEE-EecCHHHHHHHHHHHHHhc
Confidence 489999999999999999998532 22334444332111 1111111 1111110 0111122222334555666
Q ss_pred ceEEEEEeCCCCC-CccchhhhhcccCCC-CCCcEEEEecCchHHHH
Q 038861 104 KKFLLVLDDMWNE-NYNDWELLNRPFKAG-TSGSKIIVTTRNRVVAE 148 (1165)
Q Consensus 104 ~~~LlvlDdv~~~-~~~~~~~l~~~~~~~-~~~~~iiiTtR~~~~~~ 148 (1165)
++-++++|+.... +....+.+...+... ..|..||++|.+.....
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 7788999988432 111222232222221 23667888888766443
No 320
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.62 E-value=0.047 Score=53.14 Aligned_cols=22 Identities=27% Similarity=0.441 Sum_probs=19.8
Q ss_pred cEEEEEEccCCchHHHHHHHHh
Q 038861 25 FSVISIIGMGGVGKTTLAQLVY 46 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~ 46 (1165)
-.+++|.|+.|+|||||.+.+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3589999999999999999885
No 321
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.61 E-value=0.059 Score=56.83 Aligned_cols=24 Identities=38% Similarity=0.389 Sum_probs=21.4
Q ss_pred CCcEEEEEEccCCchHHHHHHHHh
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVY 46 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~ 46 (1165)
..+.+|+|.|+.|+||||+|+.+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~ 83 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQ 83 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 457899999999999999998775
No 322
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.1 Score=61.30 Aligned_cols=133 Identities=18% Similarity=0.136 Sum_probs=75.1
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhc
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELI 102 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 102 (1165)
...+.+.++|++|.|||.||++++.. ....| +.+... .+.... -......+...+....+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~--~~~~f-----i~v~~~--------~l~sk~-----vGesek~ir~~F~~A~~ 333 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALE--SRSRF-----ISVKGS--------ELLSKW-----VGESEKNIRELFEKARK 333 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhh--CCCeE-----EEeeCH--------HHhccc-----cchHHHHHHHHHHHHHc
Confidence 45568999999999999999999962 33333 222211 111111 11223333444444556
Q ss_pred CceEEEEEeCCCCCC-----c------cchhhhhcccCC--CCCCcEEEEecCchHHHHh-h----cccceeeCCCCCHH
Q 038861 103 KKKFLLVLDDMWNEN-----Y------NDWELLNRPFKA--GTSGSKIIVTTRNRVVAER-V----GSVREYPLGELSKE 164 (1165)
Q Consensus 103 ~~~~LlvlDdv~~~~-----~------~~~~~l~~~~~~--~~~~~~iiiTtR~~~~~~~-~----~~~~~~~l~~l~~~ 164 (1165)
..+++|.+|+++... . .....+...+.. ...+..||-||-.++.... + +-...+.++.-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 789999999994310 0 112223333322 2234445555554433321 1 22357889999999
Q ss_pred HHHHHHhhccc
Q 038861 165 DCLRVLTQHSL 175 (1165)
Q Consensus 165 e~~~lf~~~~~ 175 (1165)
+..+.|..+..
T Consensus 414 ~r~~i~~~~~~ 424 (494)
T COG0464 414 ERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHhc
Confidence 99999998864
No 323
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.60 E-value=0.018 Score=52.67 Aligned_cols=43 Identities=23% Similarity=0.308 Sum_probs=30.7
Q ss_pred EEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccC
Q 038861 27 VISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISN 82 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~ 82 (1165)
+|.|.|++|.||||+|+.++.+.-.. | .+.-.++++++++.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-----------vsaG~iFR~~A~e~gm 44 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-----------VSAGTIFREMARERGM 44 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-----------eeccHHHHHHHHHcCC
Confidence 68999999999999999998542211 1 1233577888877654
No 324
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.59 E-value=0.044 Score=58.22 Aligned_cols=84 Identities=20% Similarity=0.103 Sum_probs=51.8
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCC-----CCCCCHHHHHHHH
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVT-----VNDNDLNSLQEKL 97 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 97 (1165)
+..+++-|+|+.|+||||||.++.. .....-..++|++.....++.. +..++... ......++..+.+
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHH
Confidence 3467999999999999999988884 3444455678998877766532 33333211 1234456666666
Q ss_pred HHHhcC-ceEEEEEeCC
Q 038861 98 EKELIK-KKFLLVLDDM 113 (1165)
Q Consensus 98 ~~~l~~-~~~LlvlDdv 113 (1165)
.+.++. ..-++|+|-|
T Consensus 124 e~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHHHTTSESEEEEE-C
T ss_pred HHHhhcccccEEEEecC
Confidence 666654 3458899988
No 325
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.14 Score=58.52 Aligned_cols=151 Identities=19% Similarity=0.169 Sum_probs=79.3
Q ss_pred EEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCceE
Q 038861 27 VISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKKKF 106 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 106 (1165)
=|.++|++|.|||-||.+++..... -++.+... + ++.+ .++ .+.+...+...+.-..+++
T Consensus 703 giLLyGppGcGKT~la~a~a~~~~~-------~fisvKGP---E-lL~K---yIG------aSEq~vR~lF~rA~~a~PC 762 (952)
T KOG0735|consen 703 GILLYGPPGCGKTLLASAIASNSNL-------RFISVKGP---E-LLSK---YIG------ASEQNVRDLFERAQSAKPC 762 (952)
T ss_pred ceEEECCCCCcHHHHHHHHHhhCCe-------eEEEecCH---H-HHHH---Hhc------ccHHHHHHHHHHhhccCCe
Confidence 3789999999999999999853211 13554432 1 1111 122 2233334444455567999
Q ss_pred EEEEeCCCCCCc-----------cchhhhhcccCC--CCCCcEEEE-ecCchHHHHhh----cccceeeCCCCCHHHHHH
Q 038861 107 LLVLDDMWNENY-----------NDWELLNRPFKA--GTSGSKIIV-TTRNRVVAERV----GSVREYPLGELSKEDCLR 168 (1165)
Q Consensus 107 LlvlDdv~~~~~-----------~~~~~l~~~~~~--~~~~~~iii-TtR~~~~~~~~----~~~~~~~l~~l~~~e~~~ 168 (1165)
++.||.++...+ ....++...+.. +-.|.-|+- |||...+...+ +-++.+.-+.-++.|-++
T Consensus 763 iLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~ 842 (952)
T KOG0735|consen 763 ILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLE 842 (952)
T ss_pred EEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHH
Confidence 999999855321 112333333322 124555554 56654322221 122334445567777777
Q ss_pred HHhhcccCCCCCCCCcchHHHHHHHHHHcCCCch
Q 038861 169 VLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPL 202 (1165)
Q Consensus 169 lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 202 (1165)
+|...+-.-.. .. ....+.++.+++|.--
T Consensus 843 il~~ls~s~~~-~~----~vdl~~~a~~T~g~tg 871 (952)
T KOG0735|consen 843 ILQVLSNSLLK-DT----DVDLECLAQKTDGFTG 871 (952)
T ss_pred HHHHHhhccCC-cc----ccchHHHhhhcCCCch
Confidence 77655321111 11 1335667777777653
No 326
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.55 E-value=0.052 Score=53.24 Aligned_cols=22 Identities=45% Similarity=0.742 Sum_probs=20.2
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+++|.|+.|.|||||++.++-
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G 50 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILG 50 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999999985
No 327
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.55 E-value=0.029 Score=61.28 Aligned_cols=43 Identities=26% Similarity=0.229 Sum_probs=33.3
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhC
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
||+...+.++.+.+..... ...-|.|+|.+|+||+++|+.++.
T Consensus 9 iG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 9 LGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred EECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHH
Confidence 5778888888887765432 123589999999999999999974
No 328
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.51 E-value=0.061 Score=52.95 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.4
Q ss_pred cEEEEEEccCCchHHHHHHHHhCC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
..+|+|.|++|+||||+|++++..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999999853
No 329
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.49 E-value=0.054 Score=54.31 Aligned_cols=21 Identities=48% Similarity=0.675 Sum_probs=19.7
Q ss_pred EEEEEccCCchHHHHHHHHhC
Q 038861 27 VISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
||+|.|++|+||||+|+++..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999985
No 330
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.48 E-value=0.1 Score=54.25 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=34.7
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHH
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKS 75 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~ 75 (1165)
.+..++.|.|++|+|||++|.++... ....-+.++|++... ++.++.+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~--~~~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEEeeC--CHHHHHHH
Confidence 35678999999999999999887642 223456778887654 45555554
No 331
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.47 E-value=0.038 Score=60.22 Aligned_cols=43 Identities=26% Similarity=0.216 Sum_probs=33.6
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhC
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
||+...+.++.+.+..... .-.-|.|+|..|+||+++|+.++.
T Consensus 2 iG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~ 44 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHY 44 (329)
T ss_pred CcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHH
Confidence 6788888888887765432 123489999999999999999975
No 332
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.46 E-value=0.045 Score=55.73 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=19.3
Q ss_pred EEEEEccCCchHHHHHHHHhC
Q 038861 27 VISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+|+|.|.+|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999885
No 333
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.46 E-value=0.082 Score=50.13 Aligned_cols=21 Identities=38% Similarity=0.656 Sum_probs=19.1
Q ss_pred EEEEEccCCchHHHHHHHHhC
Q 038861 27 VISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+|.|+|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999885
No 334
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.45 E-value=0.054 Score=55.01 Aligned_cols=122 Identities=13% Similarity=0.109 Sum_probs=67.1
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcC-----CCCHHHHHHHHHHhccCCCC------CCCCHHHH
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSE-----DFDVFRVTKSILMSISNVTV------NDNDLNSL 93 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~-----~~~~~~~~~~i~~~l~~~~~------~~~~~~~~ 93 (1165)
..+++|+|..|.||||+++.+.. ...--.+.+++...+ .....+...+++...+.... ..-+-.+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 35899999999999999999984 222223344443221 11233445555555553321 12222233
Q ss_pred HH-HHHHHhcCceEEEEEeCCCCCCc----cchhhhhcccCCCCCCcEEEEecCchHHHHhh
Q 038861 94 QE-KLEKELIKKKFLLVLDDMWNENY----NDWELLNRPFKAGTSGSKIIVTTRNRVVAERV 150 (1165)
Q Consensus 94 ~~-~l~~~l~~~~~LlvlDdv~~~~~----~~~~~l~~~~~~~~~~~~iiiTtR~~~~~~~~ 150 (1165)
++ .+.+.+.-++-++|.|..-..-. .+.-.+...+.. ..|...+..|-+-.+...+
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhh
Confidence 33 45677888999999998733211 111222222222 2355666667666666554
No 335
>PRK13695 putative NTPase; Provisional
Probab=95.45 E-value=0.0098 Score=58.46 Aligned_cols=21 Identities=48% Similarity=0.536 Sum_probs=19.0
Q ss_pred EEEEccCCchHHHHHHHHhCC
Q 038861 28 ISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 28 v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
|+|+|.+|+|||||++.++..
T Consensus 3 i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998753
No 336
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.43 E-value=0.019 Score=57.84 Aligned_cols=39 Identities=28% Similarity=0.454 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCC
Q 038861 6 DKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 6 ~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
+..++.+.+.... ++..+|+|+|+||+|||||..++...
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~ 52 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRE 52 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHH
Confidence 4556666665432 35679999999999999999888753
No 337
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.42 E-value=0.067 Score=52.12 Aligned_cols=22 Identities=41% Similarity=0.649 Sum_probs=20.2
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+++|.|+.|.|||||++.+.-
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHc
Confidence 5899999999999999998875
No 338
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.41 E-value=0.011 Score=54.89 Aligned_cols=21 Identities=43% Similarity=0.618 Sum_probs=19.0
Q ss_pred EEEEccCCchHHHHHHHHhCC
Q 038861 28 ISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 28 v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
|+|.|++|+||||+|+++...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999853
No 339
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.39 E-value=0.074 Score=54.68 Aligned_cols=49 Identities=18% Similarity=0.122 Sum_probs=31.6
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHH
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSI 76 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i 76 (1165)
...++.|.|++|+||||+|.+++.. ....-..+++++. ..+..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~--~~~~g~~~~yi~~--e~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYG--FLQNGYSVSYVST--QLTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEEeC--CCCHHHHHHHH
Confidence 3458999999999999998777643 2122245566663 33455555554
No 340
>PRK06547 hypothetical protein; Provisional
Probab=95.33 E-value=0.023 Score=55.06 Aligned_cols=26 Identities=38% Similarity=0.469 Sum_probs=22.9
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCC
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
....+|+|.|++|+||||+|+.++..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999853
No 341
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.33 E-value=0.013 Score=46.79 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=19.4
Q ss_pred EEEEEccCCchHHHHHHHHhCC
Q 038861 27 VISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
+|+|.|.+|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988853
No 342
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.14 Score=50.74 Aligned_cols=47 Identities=23% Similarity=0.197 Sum_probs=33.4
Q ss_pred CchHHHHHHHHHHhcCC-------CCCCCCcEEEEEEccCCchHHHHHHHHhCC
Q 038861 2 GRKKDKDEIVELLLRDD-------SRADDGFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 2 GR~~~~~~l~~~l~~~~-------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
|-.++++.+.+-+.-.- .-+-++++=|.++|++|.|||-+|++|++.
T Consensus 181 gckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanr 234 (435)
T KOG0729|consen 181 GCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANR 234 (435)
T ss_pred chHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcc
Confidence 45667777766554210 113355677899999999999999999974
No 343
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.27 E-value=0.051 Score=53.32 Aligned_cols=118 Identities=16% Similarity=0.121 Sum_probs=57.9
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhcc--CCCC---CC--------CCHHH
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSIS--NVTV---ND--------NDLNS 92 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~--~~~~---~~--------~~~~~ 92 (1165)
.+++|.|+.|.|||||++.++-... ...+.+++......+.. ......+. .+.. .. -+..+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~ 100 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGGM 100 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHHH
Confidence 5899999999999999999975321 22333443211100000 01111111 0000 00 11111
Q ss_pred -HHHHHHHHhcCceEEEEEeCCCCCC-ccchhhhhcccCCC-CCCcEEEEecCchHHHHh
Q 038861 93 -LQEKLEKELIKKKFLLVLDDMWNEN-YNDWELLNRPFKAG-TSGSKIIVTTRNRVVAER 149 (1165)
Q Consensus 93 -~~~~l~~~l~~~~~LlvlDdv~~~~-~~~~~~l~~~~~~~-~~~~~iiiTtR~~~~~~~ 149 (1165)
..-.+.+.+..++-++++|+....- ......+...+... ..|..||++|.+......
T Consensus 101 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 101 KQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 2223556667788899999984321 11122222222221 235678888887765543
No 344
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.16 E-value=0.031 Score=50.76 Aligned_cols=41 Identities=27% Similarity=0.232 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCC
Q 038861 4 KKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 4 ~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
+++.+++.+.+.+.-. ...+|.+.|.-|+||||+++.++..
T Consensus 5 ~~~t~~l~~~l~~~l~----~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 5 EKAMDKFGKAFAKPLD----FGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHHhCC----CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3555666666643221 2358999999999999999999864
No 345
>PTZ00301 uridine kinase; Provisional
Probab=95.15 E-value=0.028 Score=56.38 Aligned_cols=23 Identities=35% Similarity=0.575 Sum_probs=20.7
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
..+|+|.|.+|.||||+|+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999998874
No 346
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.14 E-value=0.013 Score=51.87 Aligned_cols=21 Identities=52% Similarity=0.678 Sum_probs=18.6
Q ss_pred EEEEccCCchHHHHHHHHhCC
Q 038861 28 ISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 28 v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
|.|+|++|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999998753
No 347
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.14 E-value=0.25 Score=53.63 Aligned_cols=73 Identities=23% Similarity=0.274 Sum_probs=42.5
Q ss_pred HHHHHHHhcCC-CC--CCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcC--CCCHHHHHHHHHHhccC
Q 038861 8 DEIVELLLRDD-SR--ADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSE--DFDVFRVTKSILMSISN 82 (1165)
Q Consensus 8 ~~l~~~l~~~~-~~--~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~--~~~~~~~~~~i~~~l~~ 82 (1165)
++|++.|-.+. .. ....+.+|..+|.-|.||||.|.++++. .+. ....+-+...+ .+...+-++.++.+.+.
T Consensus 80 eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~--lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v 156 (451)
T COG0541 80 EELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKY--LKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGV 156 (451)
T ss_pred HHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHH--HHH-cCCceEEEecccCChHHHHHHHHHHHHcCC
Confidence 55666665321 11 1245789999999999999999888853 333 22222222222 23344556666666654
Q ss_pred C
Q 038861 83 V 83 (1165)
Q Consensus 83 ~ 83 (1165)
+
T Consensus 157 ~ 157 (451)
T COG0541 157 P 157 (451)
T ss_pred c
Confidence 4
No 348
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.14 E-value=0.085 Score=55.13 Aligned_cols=56 Identities=20% Similarity=0.153 Sum_probs=38.0
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchh----ccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVR----RHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
...+.=|+|++|+|||+|+.+++-..... +.-..++|++-...++..++. +|++..
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 34588999999999999998776322221 223457899988888887765 455543
No 349
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.14 E-value=0.011 Score=52.48 Aligned_cols=27 Identities=37% Similarity=0.592 Sum_probs=17.8
Q ss_pred EEEEccCCchHHHHHHHHhCCcchhccCC
Q 038861 28 ISIIGMGGVGKTTLAQLVYKDDRVRRHFE 56 (1165)
Q Consensus 28 v~i~G~~GiGKTtLa~~~~~~~~~~~~f~ 56 (1165)
|.|+|.+|+||||+|+.++. .....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 68999999999999999984 3455553
No 350
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.11 E-value=0.03 Score=54.45 Aligned_cols=22 Identities=45% Similarity=0.590 Sum_probs=19.7
Q ss_pred EEEEEccCCchHHHHHHHHhCC
Q 038861 27 VISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
.|.|.|++|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999864
No 351
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.28 Score=49.75 Aligned_cols=151 Identities=17% Similarity=0.195 Sum_probs=75.2
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHh-c
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKEL-I 102 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~ 102 (1165)
+-+-|.++|++|.||+.||++|+.. ...-| +.++.. ++.....+ ..+.+...+-+.. .
T Consensus 165 PwrgiLLyGPPGTGKSYLAKAVATE--AnSTF-----FSvSSS--------DLvSKWmG------ESEkLVknLFemARe 223 (439)
T KOG0739|consen 165 PWRGILLYGPPGTGKSYLAKAVATE--ANSTF-----FSVSSS--------DLVSKWMG------ESEKLVKNLFEMARE 223 (439)
T ss_pred cceeEEEeCCCCCcHHHHHHHHHhh--cCCce-----EEeehH--------HHHHHHhc------cHHHHHHHHHHHHHh
Confidence 4567899999999999999999953 32333 333332 12222211 1223333333222 4
Q ss_pred CceEEEEEeCCCCC-------Cccchhhhhc----ccC---CCCCCcEEEEecCchHHHHhh-c-c-cceeeCCCCCHHH
Q 038861 103 KKKFLLVLDDMWNE-------NYNDWELLNR----PFK---AGTSGSKIIVTTRNRVVAERV-G-S-VREYPLGELSKED 165 (1165)
Q Consensus 103 ~~~~LlvlDdv~~~-------~~~~~~~l~~----~~~---~~~~~~~iiiTtR~~~~~~~~-~-~-~~~~~l~~l~~~e 165 (1165)
.++-+|.+|.++.. +.+....+.. ... ....|.-|+-.|-.+-+.... + . .+.+-+ ||.+..
T Consensus 224 ~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~ 302 (439)
T KOG0739|consen 224 NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAH 302 (439)
T ss_pred cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceec-cCCcHH
Confidence 68899999998531 1111222211 111 223455566667665544332 1 1 122223 344444
Q ss_pred H-HHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCC
Q 038861 166 C-LRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGL 200 (1165)
Q Consensus 166 ~-~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 200 (1165)
| ..+|.-+.......-.. +..+++++++.|.
T Consensus 303 AR~~MF~lhlG~tp~~LT~----~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 303 ARARMFKLHLGDTPHVLTE----QDFKELARKTEGY 334 (439)
T ss_pred HhhhhheeccCCCccccch----hhHHHHHhhcCCC
Confidence 4 45677665433322223 3445566666664
No 352
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.09 E-value=0.042 Score=52.39 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=20.1
Q ss_pred EEEEEEccCCchHHHHHHHHhCC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
+.|.++|.+|+||||+|++++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~ 24 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKE 24 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHH
Confidence 46889999999999999999853
No 353
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.09 E-value=0.13 Score=61.93 Aligned_cols=130 Identities=15% Similarity=0.230 Sum_probs=69.2
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCce
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKKK 105 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 105 (1165)
+-|.|+|++|+|||++|+.++.. ....| +.++.. .+.. ... ..........+.......+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~--~~~~f-----~~is~~----~~~~-~~~--------g~~~~~~~~~f~~a~~~~P 245 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGE--AKVPF-----FTISGS----DFVE-MFV--------GVGASRVRDMFEQAKKAAP 245 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--cCCCE-----EEEehH----HhHH-hhh--------cccHHHHHHHHHHHHhcCC
Confidence 34899999999999999999853 22222 222211 1111 000 1112233333344444578
Q ss_pred EEEEEeCCCCCCc----------cch----hhhhcccCC--CCCCcEEEEecCchHHHHh-h----cccceeeCCCCCHH
Q 038861 106 FLLVLDDMWNENY----------NDW----ELLNRPFKA--GTSGSKIIVTTRNRVVAER-V----GSVREYPLGELSKE 164 (1165)
Q Consensus 106 ~LlvlDdv~~~~~----------~~~----~~l~~~~~~--~~~~~~iiiTtR~~~~~~~-~----~~~~~~~l~~l~~~ 164 (1165)
.+|++|+++.... ... ..+...+.. ...+..+|.||...+.... . .-...+.++..+.+
T Consensus 246 ~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~ 325 (644)
T PRK10733 246 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 325 (644)
T ss_pred cEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHH
Confidence 9999999854210 111 112111221 1234556667776553322 1 12357888888888
Q ss_pred HHHHHHhhccc
Q 038861 165 DCLRVLTQHSL 175 (1165)
Q Consensus 165 e~~~lf~~~~~ 175 (1165)
+-.+++..+..
T Consensus 326 ~R~~Il~~~~~ 336 (644)
T PRK10733 326 GREQILKVHMR 336 (644)
T ss_pred HHHHHHHHHhh
Confidence 88888887653
No 354
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.08 E-value=0.088 Score=62.37 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=32.7
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCC
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
||+...++++.+.+..... ....|.|+|.+|+|||++|+.+++.
T Consensus 199 iG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 199 IGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred EECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHh
Confidence 4677777777777754322 1235789999999999999999863
No 355
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.07 E-value=0.12 Score=56.11 Aligned_cols=58 Identities=17% Similarity=0.114 Sum_probs=40.0
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcch---h-ccCCceEEEEEcCCCCHHHHHHHHHHhcc
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRV---R-RHFEIKAWTFVSEDFDVFRVTKSILMSIS 81 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~---~-~~f~~~~w~~~~~~~~~~~~~~~i~~~l~ 81 (1165)
....++-|+|.+|+|||++|..++..... . ..-..++|++....++++++. ++++.++
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~ 182 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFG 182 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcC
Confidence 34678899999999999999877632111 1 112368899998888887764 4455543
No 356
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.06 E-value=0.079 Score=67.97 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.0
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
.++=|.++|++|+|||.||++++.+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHh
Confidence 4566899999999999999999965
No 357
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.24 Score=57.36 Aligned_cols=69 Identities=19% Similarity=0.259 Sum_probs=43.7
Q ss_pred EEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCceE
Q 038861 27 VISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKKKF 106 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 106 (1165)
=|.+||++|.|||-+|++|+.. ..- .|+.|... +++... + +.+.+...+...+.-...++
T Consensus 707 GILLYGPPGTGKTLlAKAVATE--csL-----~FlSVKGP----ELLNMY---V------GqSE~NVR~VFerAR~A~PC 766 (953)
T KOG0736|consen 707 GILLYGPPGTGKTLLAKAVATE--CSL-----NFLSVKGP----ELLNMY---V------GQSEENVREVFERARSAAPC 766 (953)
T ss_pred eeEEECCCCCchHHHHHHHHhh--cee-----eEEeecCH----HHHHHH---h------cchHHHHHHHHHHhhccCCe
Confidence 4789999999999999999953 221 23444332 111111 1 12344445555555567899
Q ss_pred EEEEeCCCC
Q 038861 107 LLVLDDMWN 115 (1165)
Q Consensus 107 LlvlDdv~~ 115 (1165)
+|.||.++.
T Consensus 767 VIFFDELDS 775 (953)
T KOG0736|consen 767 VIFFDELDS 775 (953)
T ss_pred EEEeccccc
Confidence 999999865
No 358
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.05 E-value=0.15 Score=60.79 Aligned_cols=88 Identities=19% Similarity=0.130 Sum_probs=52.2
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCC-CCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSED-FDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIK 103 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 103 (1165)
.++++++|+.|+||||.+.+++...........+..++.... ....+-++...+.++.+.....+.+++.+.+.+ +++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-LGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-hcC
Confidence 579999999999999999888854322221223444443321 123445555566665544434456665555543 444
Q ss_pred ceEEEEEeCCC
Q 038861 104 KKFLLVLDDMW 114 (1165)
Q Consensus 104 ~~~LlvlDdv~ 114 (1165)
+ -++++|-.-
T Consensus 264 ~-D~VLIDTAG 273 (767)
T PRK14723 264 K-HLVLIDTVG 273 (767)
T ss_pred C-CEEEEeCCC
Confidence 4 477888774
No 359
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.05 E-value=0.0023 Score=75.90 Aligned_cols=218 Identities=20% Similarity=0.169 Sum_probs=104.7
Q ss_pred cccceeecccccccccc--cCCCCCCCccEEEEcCC-CCchhhh-----hhcccCccceeeeeccccccc-CCccc-CCC
Q 038861 939 TLEQLEVRFCSNLAFLS--RNGNLPQALKYLEVSYC-SKLESLA-----ERLDNTSLEVIAISYLENLKS-LPAGL-HNL 1008 (1165)
Q Consensus 939 ~l~~l~~~~~~~l~~~~--~~~~~~~~L~~L~l~~~-~~~~~~~-----~~~~~~~L~~L~L~~n~~~~~-~p~~~-~~l 1008 (1165)
.++.+.+..|..+.... .....-+.|+.|++++| ......+ .....++|+.|+++++...+. .-..+ ..+
T Consensus 189 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c 268 (482)
T KOG1947|consen 189 LLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRC 268 (482)
T ss_pred hhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhC
Confidence 45555555555554321 12222356888888763 2222211 111127778888888774222 11222 236
Q ss_pred CCCCEEEEeCCCC-Cc-cccCCCCCCCCcCeEEeecCCCCCc--CCcccCCCCCCceeeeccCC---CCccc--------
Q 038861 1009 HHLQELKVYGCPN-LE-SFPEGGLPSTKLTKLTIGYCENLKA--LPNCMHNLTSLLHLEIGWCR---SLVSF-------- 1073 (1165)
Q Consensus 1009 ~~L~~L~L~~n~~-~~-~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~l~~n~---~~~~~-------- 1073 (1165)
++|++|.+.+|.. +. .+-.....+++|+.|++++|...+. +.....++++|+.|.+.... .+...
T Consensus 269 ~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~ 348 (482)
T KOG1947|consen 269 PNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTL 348 (482)
T ss_pred CCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhcc
Confidence 7888888777773 21 2222334567788888888776421 12223334554444433322 11110
Q ss_pred -----CC--CCCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCCCCcccCCCCCCcccEEEecCCCCcccHHHh
Q 038861 1074 -----PE--DGFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCPVLLSSPWFPASLTVLHISYMPNLESLSLI 1146 (1165)
Q Consensus 1074 -----p~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~ 1146 (1165)
.. ...++.++.+.+..+..........+.+++.|. ..+.... ....+++.|+++.+...+.-...
T Consensus 349 ~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~~-------~~~~~l~~L~l~~~~~~t~~~l~ 420 (482)
T KOG1947|consen 349 TSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELRL-------CRSDSLRVLNLSDCRLVTDKGLR 420 (482)
T ss_pred CchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHHh-------ccCCccceEecccCccccccchH
Confidence 00 034566666666666533221122344455552 2221100 00112677777776654432211
Q ss_pred --hhcCCccceEeecCCCCC
Q 038861 1147 --VENLTSLEILILCKCPKL 1164 (1165)
Q Consensus 1147 --~~~l~~L~~L~l~~c~~l 1164 (1165)
...+..+..+++.+|+.+
T Consensus 421 ~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 421 CLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred HHhhhhhccccCCccCcccc
Confidence 112667777777777654
No 360
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=95.04 E-value=0.72 Score=48.70 Aligned_cols=69 Identities=14% Similarity=0.178 Sum_probs=46.1
Q ss_pred CceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCch-HHHHhh-cccceeeCCCCCHHHHHHHHhh
Q 038861 103 KKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNR-VVAERV-GSVREYPLGELSKEDCLRVLTQ 172 (1165)
Q Consensus 103 ~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~-~~~~~~-~~~~~~~l~~l~~~e~~~lf~~ 172 (1165)
+++-++|+|+++.........+...+...++++.+|++|.+. .+.... ..-..+.+.+ +.++..+.+..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 456699999998777777777877777766677777777654 344333 2235667766 66666666654
No 361
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.03 E-value=0.018 Score=54.61 Aligned_cols=21 Identities=43% Similarity=0.575 Sum_probs=19.0
Q ss_pred EEEEEccCCchHHHHHHHHhC
Q 038861 27 VISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+|.+.|++|+||||+|+++..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999873
No 362
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.02 E-value=0.096 Score=57.12 Aligned_cols=56 Identities=13% Similarity=0.124 Sum_probs=38.9
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchh----ccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVR----RHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
...++-|+|++|+|||+++.+++...... ..-..++|++....++..++.+ +++.+
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~ 153 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEAR 153 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHc
Confidence 46788999999999999999887432211 1113788999888788776543 34433
No 363
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.01 E-value=0.08 Score=55.64 Aligned_cols=41 Identities=20% Similarity=0.249 Sum_probs=30.4
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcC
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSE 65 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~ 65 (1165)
..-.++.|.|++|+|||++|.+++.. ....-..+++++...
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~--~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVT--QASRGNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEecC
Confidence 34678999999999999999998642 222345677887754
No 364
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=0.23 Score=57.19 Aligned_cols=94 Identities=18% Similarity=0.245 Sum_probs=51.9
Q ss_pred CchHH---HHHHHHHHhcCCC---CCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHH
Q 038861 2 GRKKD---KDEIVELLLRDDS---RADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKS 75 (1165)
Q Consensus 2 GR~~~---~~~l~~~l~~~~~---~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~ 75 (1165)
|+|+. +.+++++|..... .+..-++=|.++|++|.|||.||++++-...+ .| ...+.. +
T Consensus 154 G~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~V--PF-----f~iSGS--------~ 218 (596)
T COG0465 154 GVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV--PF-----FSISGS--------D 218 (596)
T ss_pred CcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCC--Cc-----eeccch--------h
Confidence 45544 4555666654331 12233566899999999999999999965332 22 111111 0
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCC
Q 038861 76 ILMSISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWN 115 (1165)
Q Consensus 76 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~ 115 (1165)
..+..- ........+...+..+.-+++|++|.++.
T Consensus 219 FVemfV-----GvGAsRVRdLF~qAkk~aP~IIFIDEiDA 253 (596)
T COG0465 219 FVEMFV-----GVGASRVRDLFEQAKKNAPCIIFIDEIDA 253 (596)
T ss_pred hhhhhc-----CCCcHHHHHHHHHhhccCCCeEEEehhhh
Confidence 011111 11222333444555566789999998744
No 365
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.97 E-value=0.14 Score=55.59 Aligned_cols=58 Identities=17% Similarity=0.115 Sum_probs=40.7
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcch----hccCCceEEEEEcCCCCHHHHHHHHHHhcc
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRV----RRHFEIKAWTFVSEDFDVFRVTKSILMSIS 81 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~----~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~ 81 (1165)
....++-|+|++|+|||+|+.+++-.... .+.-..++|++....+++.++.+ +++.++
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g 185 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFG 185 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 34578889999999999999888632211 11224678999988888887655 445443
No 366
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.96 E-value=0.041 Score=55.74 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=20.2
Q ss_pred cEEEEEEccCCchHHHHHHHHh
Q 038861 25 FSVISIIGMGGVGKTTLAQLVY 46 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~ 46 (1165)
.+++.|+|+.|.||||+.+.+.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHH
Confidence 4889999999999999999886
No 367
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.95 E-value=0.14 Score=55.36 Aligned_cols=89 Identities=17% Similarity=0.059 Sum_probs=53.4
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCC-CCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSED-FDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIK 103 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 103 (1165)
.++|.++|+.||||||-..+++........=..+..++.... -...+-++..++-++.+.....+..+....+... +.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l-~~ 281 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL-RD 281 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-hc
Confidence 689999999999999765555532221233335556665542 2444555566666665554455666666655543 33
Q ss_pred ceEEEEEeCCCC
Q 038861 104 KKFLLVLDDMWN 115 (1165)
Q Consensus 104 ~~~LlvlDdv~~ 115 (1165)
. -+|.+|-+..
T Consensus 282 ~-d~ILVDTaGr 292 (407)
T COG1419 282 C-DVILVDTAGR 292 (407)
T ss_pred C-CEEEEeCCCC
Confidence 3 4667787744
No 368
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=94.95 E-value=0.053 Score=50.60 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCchHHHHHHHHhC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+..+|+++|.+|.||||+|.+++.
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~ 45 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEE 45 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHH
Confidence 457999999999999999999984
No 369
>PTZ00494 tuzin-like protein; Provisional
Probab=94.94 E-value=0.52 Score=51.14 Aligned_cols=161 Identities=9% Similarity=0.096 Sum_probs=94.9
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
|.|++|-..+.+.|.+-+. ..++++++.|.-|.||++|.+.+.... --..++|++.... +-++.+.+.+
T Consensus 374 V~R~~eE~~vRqvL~qld~---aHPRIvV~TG~~GcGKSslcRsAvrkE-----~~paV~VDVRg~E---DtLrsVVKAL 442 (664)
T PTZ00494 374 VRREDEEALVRSVLTQMAP---SHPRIVALAGGSGGGRCVPCRRAVRVE-----GVALVHVDVGGTE---DTLRSVVRAL 442 (664)
T ss_pred cchhhHHHHHHHHHhhccC---CCCcEEEEecCCCCCchHHHHHHHHHc-----CCCeEEEEecCCc---chHHHHHHHh
Confidence 5688888888888876543 568999999999999999998877432 2245677777654 3467777888
Q ss_pred cCCCCCC--CCHHHHHHHHH---HHhcCceEEEEEeCCCCCCc-cchhhhhcccCCCCCCcEEEEecCchHHHHh---hc
Q 038861 81 SNVTVND--NDLNSLQEKLE---KELIKKKFLLVLDDMWNENY-NDWELLNRPFKAGTSGSKIIVTTRNRVVAER---VG 151 (1165)
Q Consensus 81 ~~~~~~~--~~~~~~~~~l~---~~l~~~~~LlvlDdv~~~~~-~~~~~l~~~~~~~~~~~~iiiTtR~~~~~~~---~~ 151 (1165)
+.+..+. +-.+-+.+..+ ....++.-+||+-=-...+. ..+.+. ..+.....-|+|++----+.+-.. +.
T Consensus 443 gV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EVplESLT~~n~~LP 521 (664)
T PTZ00494 443 GVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMKALTPLNVSSR 521 (664)
T ss_pred CCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeechHhhhchhhccCc
Confidence 7665432 22222222222 22345555666542211111 112111 112222345777775443322111 12
Q ss_pred ccceeeCCCCCHHHHHHHHhhc
Q 038861 152 SVREYPLGELSKEDCLRVLTQH 173 (1165)
Q Consensus 152 ~~~~~~l~~l~~~e~~~lf~~~ 173 (1165)
.-.-|-++.++.++|.++-.+.
T Consensus 522 RLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 522 RLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred cceeEecCCcCHHHHHHHHhcc
Confidence 2356889999999999988765
No 370
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.94 E-value=0.081 Score=64.74 Aligned_cols=131 Identities=15% Similarity=0.124 Sum_probs=66.2
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHH-HHHh
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKS-ILMS 79 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~-i~~~ 79 (1165)
||+...+..+.+.+..... ....|.|+|..|+|||++|+.++.... +. -...+.+++..-. ...+.. ++..
T Consensus 379 iG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s~-r~-~~~~v~i~c~~~~--~~~~~~~lfg~ 450 (686)
T PRK15429 379 IGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLSG-RN-NRRMVKMNCAAMP--AGLLESDLFGH 450 (686)
T ss_pred eecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhcC-CC-CCCeEEEecccCC--hhHhhhhhcCc
Confidence 4677777777666653321 123589999999999999999986321 11 1233344444322 122222 2211
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCccchhhhhcccCCC-----------CCCcEEEEecCch
Q 038861 80 ISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENYNDWELLNRPFKAG-----------TSGSKIIVTTRNR 144 (1165)
Q Consensus 80 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~-----------~~~~~iiiTtR~~ 144 (1165)
-... ..... ......+. ....=.|+||+|+.........+...+... ....|||.||...
T Consensus 451 ~~~~-~~g~~-~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 451 ERGA-FTGAS-AQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred cccc-ccccc-cchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 1100 00100 11111121 122346899999776554444444433221 1356888888654
No 371
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.93 E-value=0.19 Score=52.45 Aligned_cols=90 Identities=14% Similarity=0.153 Sum_probs=48.8
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCC-CHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhc
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDF-DVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELI 102 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 102 (1165)
+..+++++|.+|+||||+++.+... ....-..+.++...... ....-+...+..++.+.....+.+.+...+.. ++
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~--l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~-l~ 150 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTY-FK 150 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHH-HH
Confidence 3468999999999999999888742 22222344455544322 12222233333333222222344444444433 33
Q ss_pred --CceEEEEEeCCCCC
Q 038861 103 --KKKFLLVLDDMWNE 116 (1165)
Q Consensus 103 --~~~~LlvlDdv~~~ 116 (1165)
.+.-++++|..-..
T Consensus 151 ~~~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 151 EEARVDYILIDTAGKN 166 (270)
T ss_pred hcCCCCEEEEECCCCC
Confidence 24568899988443
No 372
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.92 E-value=0.059 Score=53.18 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=20.2
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+++|.|+.|.|||||++.++-
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999974
No 373
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.89 E-value=0.17 Score=55.89 Aligned_cols=82 Identities=22% Similarity=0.175 Sum_probs=47.1
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCC-----CCCCHHHHHHHHH
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTV-----NDNDLNSLQEKLE 98 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 98 (1165)
...++.|.|.+|+|||||+.+++.. ....-..++|+.... +..++.. -+..++.... ...+.+.+...+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EE--s~~qi~~-Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEE--SPEQIKL-RADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCc--CHHHHHH-HHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 3568999999999999999998843 333334566776543 3333322 2334432211 1223344433332
Q ss_pred HHhcCceEEEEEeCC
Q 038861 99 KELIKKKFLLVLDDM 113 (1165)
Q Consensus 99 ~~l~~~~~LlvlDdv 113 (1165)
+.+.-++|+|.+
T Consensus 156 ---~~~~~lVVIDSI 167 (372)
T cd01121 156 ---ELKPDLVIIDSI 167 (372)
T ss_pred ---hcCCcEEEEcch
Confidence 235668889987
No 374
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.88 E-value=0.11 Score=47.97 Aligned_cols=103 Identities=16% Similarity=0.113 Sum_probs=37.6
Q ss_pred ccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC--CCCCC
Q 038861 1004 GLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED--GFPTN 1081 (1165)
Q Consensus 1004 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~--~~~~~ 1081 (1165)
.|.++++|+.+.+.. .+......+|..+++|+.+.+.++ +.......|.++++|+.+.+.+ .. ..++.. ...++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~-~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NL-KSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cc-ccccccccccccc
Confidence 344555555555543 223333344555555555555543 3333334455555555555543 22 222222 23455
Q ss_pred cceEEEecCCCCCcccccccccCCCCcEEEEe
Q 038861 1082 LESLEVHDLKISKPLFEWGLNKFSSLRELQIT 1113 (1165)
Q Consensus 1082 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 1113 (1165)
|+.+++..+ +. .+....|.+. +|+.+.+.
T Consensus 83 l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 83 LKNIDIPSN-IT-EIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp ECEEEETTT--B-EEHTTTTTT--T--EEE-T
T ss_pred ccccccCcc-cc-EEchhhhcCC-CceEEEEC
Confidence 555555433 22 2233334444 55554443
No 375
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.88 E-value=0.11 Score=60.73 Aligned_cols=44 Identities=18% Similarity=0.223 Sum_probs=33.3
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCC
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
||+...++++.+.+..... ....|.|+|..|+|||++|+.+++.
T Consensus 190 ig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 190 IGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred eecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHh
Confidence 4777777777777765332 2235899999999999999999853
No 376
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.87 E-value=0.12 Score=57.51 Aligned_cols=88 Identities=22% Similarity=0.189 Sum_probs=46.3
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcC-CCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhc
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSE-DFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELI 102 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 102 (1165)
...+++++|+.|+||||+++.++...........+.++.... .....+-+....+.++.+.....+..+....+. .++
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~-~l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLH-ELR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHH-Hhc
Confidence 457999999999999999988874211122223334444332 122333344455555443333333444333322 344
Q ss_pred CceEEEEEeCC
Q 038861 103 KKKFLLVLDDM 113 (1165)
Q Consensus 103 ~~~~LlvlDdv 113 (1165)
+. -++++|-.
T Consensus 269 ~~-d~VLIDTa 278 (420)
T PRK14721 269 GK-HMVLIDTV 278 (420)
T ss_pred CC-CEEEecCC
Confidence 43 35667765
No 377
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.86 E-value=0.024 Score=57.77 Aligned_cols=25 Identities=40% Similarity=0.611 Sum_probs=22.3
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
+..+|+|.|++|+||||||+.++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999853
No 378
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.86 E-value=0.22 Score=53.73 Aligned_cols=49 Identities=20% Similarity=0.152 Sum_probs=33.7
Q ss_pred eeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHH
Q 038861 155 EYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAA 204 (1165)
Q Consensus 155 ~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 204 (1165)
+++|++++.+|+..++...+...-. ......+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l-~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWL-RSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcc-ccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999988876533221 221333456677777779999654
No 379
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.85 E-value=0.16 Score=49.36 Aligned_cols=23 Identities=39% Similarity=0.502 Sum_probs=20.5
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
..+++|.|++|.|||||.+.+..
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 35899999999999999999864
No 380
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.84 E-value=0.11 Score=57.89 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.1
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhC
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.++.+|.++|++|+||||+|..++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999988875
No 381
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.84 E-value=0.024 Score=57.54 Aligned_cols=24 Identities=42% Similarity=0.535 Sum_probs=21.8
Q ss_pred CcEEEEEEccCCchHHHHHHHHhC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
...+|+|.|++|+||||||+.++.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999985
No 382
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.83 E-value=0.03 Score=57.14 Aligned_cols=47 Identities=30% Similarity=0.274 Sum_probs=31.2
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCH
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDV 69 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~ 69 (1165)
++..+|+|+|.||+|||||..++......+++--.++-|+-+..++-
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TG 95 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTG 95 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCC
Confidence 46679999999999999999888754333333333344444444443
No 383
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.82 E-value=0.16 Score=54.95 Aligned_cols=57 Identities=18% Similarity=0.089 Sum_probs=38.0
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcch---hc-cCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRV---RR-HFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~---~~-~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
....++.|+|.+|+||||++.+++..... .+ .-..++|++....++..++ .++++.+
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~ 154 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERY 154 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHc
Confidence 34678999999999999999888642111 11 1235689888777777653 3344443
No 384
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.80 E-value=0.23 Score=49.75 Aligned_cols=58 Identities=14% Similarity=0.221 Sum_probs=34.3
Q ss_pred HHHHHHHhcCceEEEEEeCCCCC-CccchhhhhcccCC--CCCCcEEEEecCchHHHHhhc
Q 038861 94 QEKLEKELIKKKFLLVLDDMWNE-NYNDWELLNRPFKA--GTSGSKIIVTTRNRVVAERVG 151 (1165)
Q Consensus 94 ~~~l~~~l~~~~~LlvlDdv~~~-~~~~~~~l~~~~~~--~~~~~~iiiTtR~~~~~~~~~ 151 (1165)
.-.+.+.+...+-+|+-|+--.. +...-+.+...+.. ...|..||+.|-++.++..+.
T Consensus 150 RVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 150 RVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 33566777888889999975221 11111222222222 234778999999999887544
No 385
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.79 E-value=0.11 Score=61.28 Aligned_cols=118 Identities=17% Similarity=0.137 Sum_probs=59.4
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchh-ccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCC---CCHHHHHHHHHHHh
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVR-RHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVND---NDLNSLQEKLEKEL 101 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~~l 101 (1165)
++..|+|.+|+||||+++.+....... ..-...+.+......-...+.+.+...+....... ........-+++.|
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlL 247 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRLL 247 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHHh
Confidence 588999999999999998887432111 11113444544444444455555543322111000 00000122233333
Q ss_pred cC------------ce---EEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCchHH
Q 038861 102 IK------------KK---FLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRVV 146 (1165)
Q Consensus 102 ~~------------~~---~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~~ 146 (1165)
.. .+ -++|+|.+.= .+...+...+...++++|+|+.--..+.
T Consensus 248 g~~~~~~~~~~~~~~~l~~dvlIvDEaSM---vd~~lm~~ll~al~~~~rlIlvGD~~QL 304 (615)
T PRK10875 248 GAQPGSQRLRYHAGNPLHLDVLVVDEASM---VDLPMMARLIDALPPHARVIFLGDRDQL 304 (615)
T ss_pred CcCCCccchhhccccCCCCCeEEEChHhc---ccHHHHHHHHHhcccCCEEEEecchhhc
Confidence 11 11 3899999833 3333333333334568898887766543
No 386
>PHA00729 NTP-binding motif containing protein
Probab=94.79 E-value=0.034 Score=55.57 Aligned_cols=24 Identities=46% Similarity=0.558 Sum_probs=21.0
Q ss_pred cEEEEEEccCCchHHHHHHHHhCC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
...|.|+|.+|+||||||.++.+.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999853
No 387
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.78 E-value=0.11 Score=51.83 Aligned_cols=28 Identities=36% Similarity=0.470 Sum_probs=23.1
Q ss_pred CCCCcEEEEEEccCCchHHHHHHHHhCC
Q 038861 21 ADDGFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 21 ~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
...++.+|.+.||+|.||||..+.++.+
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHHH
Confidence 3445678889999999999999998854
No 388
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.78 E-value=0.0016 Score=64.52 Aligned_cols=55 Identities=22% Similarity=0.159 Sum_probs=28.1
Q ss_pred CccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCC
Q 038861 963 ALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCP 1020 (1165)
Q Consensus 963 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 1020 (1165)
+.+.|+.++|.+ .++.-....+.|++|.|+-|++.+. ..+..+++|++|+|..|.
T Consensus 20 ~vkKLNcwg~~L-~DIsic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~ 74 (388)
T KOG2123|consen 20 NVKKLNCWGCGL-DDISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNC 74 (388)
T ss_pred HhhhhcccCCCc-cHHHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcc
Confidence 367777777753 3333333335555555555555332 224445555555555544
No 389
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.78 E-value=0.025 Score=57.67 Aligned_cols=20 Identities=45% Similarity=0.738 Sum_probs=18.7
Q ss_pred EEEEccCCchHHHHHHHHhC
Q 038861 28 ISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 28 v~i~G~~GiGKTtLa~~~~~ 47 (1165)
|.|.|++|+||||+|+.++.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999874
No 390
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.75 E-value=0.024 Score=59.67 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.6
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+-|.++|++|+|||++++....
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCchhHHHHhhhc
Confidence 4689999999999999998874
No 391
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.75 E-value=0.019 Score=55.58 Aligned_cols=24 Identities=50% Similarity=0.556 Sum_probs=21.4
Q ss_pred cEEEEEEccCCchHHHHHHHHhCC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
..+|+|-||=|+||||||+.++++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 358999999999999999999864
No 392
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.74 E-value=0.17 Score=57.34 Aligned_cols=89 Identities=19% Similarity=0.137 Sum_probs=45.9
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcC-CCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhc
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSE-DFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELI 102 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 102 (1165)
+.++++++|+.|+||||++.+++.....+.....+..+.... .....+-+....+.++.......+..+....+ ..++
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~ 333 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELR 333 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-Hhcc
Confidence 347999999999999999999885322222122344454332 12233334444454443322222222222222 2334
Q ss_pred CceEEEEEeCCC
Q 038861 103 KKKFLLVLDDMW 114 (1165)
Q Consensus 103 ~~~~LlvlDdv~ 114 (1165)
++ -.+++|-..
T Consensus 334 d~-d~VLIDTaG 344 (484)
T PRK06995 334 NK-HIVLIDTIG 344 (484)
T ss_pred CC-CeEEeCCCC
Confidence 44 467777763
No 393
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.74 E-value=0.14 Score=53.58 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=22.8
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCC
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
.++.+|.|.|.+|.|||||+..+...
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999988853
No 394
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.72 E-value=0.08 Score=50.99 Aligned_cols=117 Identities=18% Similarity=0.148 Sum_probs=58.6
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCC--CHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDF--DVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIK 103 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 103 (1165)
.+++|.|..|.|||||++.+..... ...+.+++...... ...+.. ..+.... +-..-+...-.+.+.+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~~----~~i~~~~-qlS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLPLEELR----RRIGYVP-QLSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCCHHHHH----hceEEEe-eCCHHHHHHHHHHHHHhc
Confidence 5899999999999999999985421 23344443322111 111111 1111100 011122222334555666
Q ss_pred ceEEEEEeCCCCCC-ccchhhhhcccCCC-CCCcEEEEecCchHHHHhh
Q 038861 104 KKFLLVLDDMWNEN-YNDWELLNRPFKAG-TSGSKIIVTTRNRVVAERV 150 (1165)
Q Consensus 104 ~~~LlvlDdv~~~~-~~~~~~l~~~~~~~-~~~~~iiiTtR~~~~~~~~ 150 (1165)
++-++++|+....- ......+...+... ..+..++++|-+.......
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 67899999984321 11222222222211 1245677787776655443
No 395
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.70 E-value=0.071 Score=55.83 Aligned_cols=22 Identities=36% Similarity=0.418 Sum_probs=17.6
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+.|.|+|.+|.||||+|+++..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~ 23 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKK 23 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHH
Confidence 4689999999999999999985
No 396
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.68 E-value=0.0014 Score=64.90 Aligned_cols=85 Identities=12% Similarity=-0.127 Sum_probs=48.3
Q ss_pred CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCC-cccCCCCCCceee
Q 038861 985 TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALP-NCMHNLTSLLHLE 1063 (1165)
Q Consensus 985 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~ 1063 (1165)
.+.+.|+..+|.+..+ +....|+.|+.|.|+=|.+...- .+..|++|++|+|..|.+...-. .-+.++++|+.|+
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 4556666666665433 23455667777777766655433 24556667777777666533210 1245666666666
Q ss_pred eccCCCCccc
Q 038861 1064 IGWCRSLVSF 1073 (1165)
Q Consensus 1064 l~~n~~~~~~ 1073 (1165)
|..|+-.+.-
T Consensus 95 L~ENPCc~~a 104 (388)
T KOG2123|consen 95 LDENPCCGEA 104 (388)
T ss_pred hccCCccccc
Confidence 6666654443
No 397
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.68 E-value=0.067 Score=53.65 Aligned_cols=120 Identities=15% Similarity=0.113 Sum_probs=58.5
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHH---HHHHHHHHH-
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLN---SLQEKLEKE- 100 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~---~~~~~l~~~- 100 (1165)
.++++|.|+.|.||||+.+.+.... +..+. .+++.... .. -.+...+...++.......... .-...+...
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~~--G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQI--GCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHHc--CCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 4789999999999999998886321 11111 11111110 01 1222233333322211111111 001111211
Q ss_pred -hcCceEEEEEeCCCCCC-ccc----hhhhhcccCCCCCCcEEEEecCchHHHHhhc
Q 038861 101 -LIKKKFLLVLDDMWNEN-YND----WELLNRPFKAGTSGSKIIVTTRNRVVAERVG 151 (1165)
Q Consensus 101 -l~~~~~LlvlDdv~~~~-~~~----~~~l~~~~~~~~~~~~iiiTtR~~~~~~~~~ 151 (1165)
+..++-++++|...... ..+ ...+...+.. .|+.+|++|-..++.....
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 23567899999984432 112 1122233322 3788999999888776554
No 398
>PTZ00035 Rad51 protein; Provisional
Probab=94.66 E-value=0.19 Score=54.86 Aligned_cols=57 Identities=16% Similarity=0.085 Sum_probs=37.4
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcch----hccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRV----RRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~----~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
....++.|+|.+|+||||++.+++-.... ...-..++|++....+++.++ .++++.+
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~ 176 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERF 176 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHh
Confidence 34678999999999999999888632221 112235568887776776663 3334443
No 399
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.65 E-value=0.17 Score=52.22 Aligned_cols=88 Identities=17% Similarity=0.163 Sum_probs=52.4
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcch--hccCCceEEEEEcCCC-CHHHHHHHHHHhccCCC-------CCCCCHHHH--
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRV--RRHFEIKAWTFVSEDF-DVFRVTKSILMSISNVT-------VNDNDLNSL-- 93 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~--~~~f~~~~w~~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~~~-- 93 (1165)
..++|.|-+|+|||+|+..+.++... +++-+.++++-+++.. .+.++.+++...-.... .+.....+.
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 35799999999999999998865331 1224566777777654 55666666554311110 111111111
Q ss_pred ---HHHHHHHh---cCceEEEEEeCC
Q 038861 94 ---QEKLEKEL---IKKKFLLVLDDM 113 (1165)
Q Consensus 94 ---~~~l~~~l---~~~~~LlvlDdv 113 (1165)
.-.+.+++ +++++|+++||+
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 12234444 268999999998
No 400
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.65 E-value=0.1 Score=52.46 Aligned_cols=84 Identities=20% Similarity=0.291 Sum_probs=48.5
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCC-CCHHHHHHHHHHhccCCC------CCCCCHHHH-----
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSED-FDVFRVTKSILMSISNVT------VNDNDLNSL----- 93 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~-~~~~~~~~~i~~~l~~~~------~~~~~~~~~----- 93 (1165)
..++|.|.+|+|||+|+.++.+.. .-+.++++-+++. ..+.++.+++...-.... .........
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 358999999999999999998542 2233466666654 345555555543311100 011111111
Q ss_pred -HHHHHHHh--cCceEEEEEeCC
Q 038861 94 -QEKLEKEL--IKKKFLLVLDDM 113 (1165)
Q Consensus 94 -~~~l~~~l--~~~~~LlvlDdv 113 (1165)
.-.+.+++ +++.+|+++||+
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETH
T ss_pred cchhhhHHHhhcCCceeehhhhh
Confidence 11122333 689999999998
No 401
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.63 E-value=0.026 Score=52.63 Aligned_cols=20 Identities=50% Similarity=0.788 Sum_probs=18.5
Q ss_pred EEEEEccCCchHHHHHHHHh
Q 038861 27 VISIIGMGGVGKTTLAQLVY 46 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~ 46 (1165)
.|+|+|.||+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999998887
No 402
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.63 E-value=0.12 Score=55.70 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=22.7
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCC
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
.+..+++++|++|+||||++..++..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35789999999999999999998853
No 403
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.61 E-value=0.055 Score=59.29 Aligned_cols=108 Identities=24% Similarity=0.322 Sum_probs=57.8
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhc
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELI 102 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 102 (1165)
..++=+.|||..|.|||-|+..+|+...++.. ..........++-+.+......... ...+.+.+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k----------~R~HFh~Fm~~vh~~l~~~~~~~~~----l~~va~~l~ 125 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRK----------RRVHFHEFMLDVHSRLHQLRGQDDP----LPQVADELA 125 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccc----------ccccccHHHHHHHHHHHHHhCCCcc----HHHHHHHHH
Confidence 34667899999999999999999975433211 1112223333333333322212222 333445556
Q ss_pred CceEEEEEeCCCCCCccchhhhhcccCC-CCCCcEEEEecCchH
Q 038861 103 KKKFLLVLDDMWNENYNDWELLNRPFKA-GTSGSKIIVTTRNRV 145 (1165)
Q Consensus 103 ~~~~LlvlDdv~~~~~~~~~~l~~~~~~-~~~~~~iiiTtR~~~ 145 (1165)
++..||.||.+.-.+..+--.+...+.. ...|. |+|+|.+..
T Consensus 126 ~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~~ 168 (362)
T PF03969_consen 126 KESRLLCFDEFQVTDIADAMILKRLFEALFKRGV-VLVATSNRP 168 (362)
T ss_pred hcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCCCC
Confidence 6777999999855544443222222222 23455 555555543
No 404
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.61 E-value=0.11 Score=47.96 Aligned_cols=116 Identities=16% Similarity=0.090 Sum_probs=59.5
Q ss_pred CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeee
Q 038861 985 TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEI 1064 (1165)
Q Consensus 985 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 1064 (1165)
++|+.+.+.. .+...-...|.++++|+.+.+.++ +......+|..+++|+.+.+.+ .........|..+++|+.+++
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence 4666776663 343444566888889999999875 4555556788888899999975 444444567888999999999
Q ss_pred ccCCCCcccCCC--CCCCCcceEEEecCCCCCcccccccccCCCCc
Q 038861 1065 GWCRSLVSFPED--GFPTNLESLEVHDLKISKPLFEWGLNKFSSLR 1108 (1165)
Q Consensus 1065 ~~n~~~~~~p~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 1108 (1165)
..+ + ..++.. ... +|+.+.+..+ +. .+....|.++++|+
T Consensus 89 ~~~-~-~~i~~~~f~~~-~l~~i~~~~~-~~-~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 89 PSN-I-TEIGSSSFSNC-NLKEINIPSN-IT-KIEENAFKNCTKLK 129 (129)
T ss_dssp TTT---BEEHTTTTTT--T--EEE-TTB--S-S----GGG------
T ss_pred Ccc-c-cEEchhhhcCC-CceEEEECCC-cc-EECCccccccccCC
Confidence 765 3 344443 444 8888887652 22 23455577777664
No 405
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.60 E-value=0.15 Score=56.95 Aligned_cols=85 Identities=16% Similarity=0.204 Sum_probs=46.6
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCC------CCCCCHHH-----HH
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVT------VNDNDLNS-----LQ 94 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~-----~~ 94 (1165)
..++|.|..|+|||||++.+..... ....++|....+..++.++....+....... .+...... ..
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a 242 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTA 242 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 4789999999999999988875321 1223344433244455554444333221110 11111111 11
Q ss_pred HHHHHHh--cCceEEEEEeCC
Q 038861 95 EKLEKEL--IKKKFLLVLDDM 113 (1165)
Q Consensus 95 ~~l~~~l--~~~~~LlvlDdv 113 (1165)
-.+.+++ +++.+|+++||+
T Consensus 243 ~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 243 TAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHcCCCEEEeccch
Confidence 1233443 478999999998
No 406
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.56 E-value=0.11 Score=51.47 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.7
Q ss_pred EEEEEEccCCchHHHHHHHHhCC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
.+++|.|+.|.|||||++.++-.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999853
No 407
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.55 E-value=0.045 Score=58.08 Aligned_cols=47 Identities=21% Similarity=0.441 Sum_probs=41.3
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhC
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+|-++.++++++.+.+.+...+.+-+++.+.||.|.||||+|..+.+
T Consensus 64 ~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 64 YGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 58899999999999877665677789999999999999999988874
No 408
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.54 E-value=0.086 Score=58.04 Aligned_cols=85 Identities=18% Similarity=0.206 Sum_probs=48.0
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCce
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKKK 105 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 105 (1165)
..|.|.|+.|.||||+++.+... +.......++.. .+.... .... ...+................++..++..+
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~ti-Edp~E~--~~~~-~~~~i~q~evg~~~~~~~~~l~~~lr~~p 196 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDY--INKNAAGHIITI-EDPIEY--VHRN-KRSLINQREVGLDTLSFANALRAALREDP 196 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEEE-cCChhh--hccC-ccceEEccccCCCCcCHHHHHHHhhccCC
Confidence 57999999999999999988742 333344455432 221111 0000 00000000011112345566778888899
Q ss_pred EEEEEeCCCCC
Q 038861 106 FLLVLDDMWNE 116 (1165)
Q Consensus 106 ~LlvlDdv~~~ 116 (1165)
=+|++|.+.+.
T Consensus 197 d~i~vgEird~ 207 (343)
T TIGR01420 197 DVILIGEMRDL 207 (343)
T ss_pred CEEEEeCCCCH
Confidence 99999999543
No 409
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.53 E-value=0.13 Score=56.25 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=37.9
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcchhc----cCCceEEEEEcCCCCHHHHHHH
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRVRR----HFEIKAWTFVSEDFDVFRVTKS 75 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~w~~~~~~~~~~~~~~~ 75 (1165)
....++-|+|++|+|||++|.+++....... .-..++|++....+++.++.+.
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~ 156 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQM 156 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHH
Confidence 3467889999999999999998874322211 1147889998887777766543
No 410
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.51 E-value=0.15 Score=53.08 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=18.5
Q ss_pred EEEEEccCCchHHHHHHHHhC
Q 038861 27 VISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+..|.|++|+|||+||.+++.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 568899999999999988874
No 411
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.49 E-value=0.072 Score=58.60 Aligned_cols=63 Identities=19% Similarity=0.134 Sum_probs=44.5
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSI 76 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i 76 (1165)
+|+++.+..+...+..+. -+.+.|++|+|||++|+.++.. .. ....++.+.......++....
T Consensus 27 ~g~~~~~~~~l~a~~~~~--------~vll~G~PG~gKT~la~~lA~~--l~---~~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 27 VGDEEVIELALLALLAGG--------HVLLEGPPGVGKTLLARALARA--LG---LPFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eccHHHHHHHHHHHHcCC--------CEEEECCCCccHHHHHHHHHHH--hC---CCeEEEecCCCCCHHHhcCch
Confidence 577788888777776654 3899999999999999999853 22 233466666666665554433
No 412
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.49 E-value=0.26 Score=49.76 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=21.0
Q ss_pred cEEEEEEccCCchHHHHHHHHhCC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
-.+++|.|+.|.|||||++.+.-.
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhccc
Confidence 358999999999999999988753
No 413
>PRK04328 hypothetical protein; Provisional
Probab=94.48 E-value=0.13 Score=53.78 Aligned_cols=40 Identities=20% Similarity=0.177 Sum_probs=30.5
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSE 65 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~ 65 (1165)
.-.++.|.|.+|+|||++|.++... ....-+.++|++...
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~lyis~ee 61 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVYVALEE 61 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEEeeC
Confidence 4578999999999999999988743 223456678887655
No 414
>PRK04040 adenylate kinase; Provisional
Probab=94.45 E-value=0.032 Score=55.18 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=20.7
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
..+|+|+|++|+||||+++.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999999885
No 415
>PRK05973 replicative DNA helicase; Provisional
Probab=94.43 E-value=0.22 Score=50.74 Aligned_cols=49 Identities=12% Similarity=0.022 Sum_probs=32.8
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHH
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSI 76 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i 76 (1165)
+-.++.|.|.+|+|||++|.+++.. ....-..+++++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~--~a~~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVE--AMKSGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEEeCC--HHHHHHHH
Confidence 4568999999999999999988743 2233445666665443 44444443
No 416
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.41 E-value=0.15 Score=51.35 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=21.2
Q ss_pred cEEEEEEccCCchHHHHHHHHhCC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
..+++|.|..|.|||||++.++-.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999988764
No 417
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.41 E-value=0.38 Score=48.87 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.4
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
-.+++|.|+.|.|||||++.++-
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999864
No 418
>PF13245 AAA_19: Part of AAA domain
Probab=94.41 E-value=0.051 Score=44.09 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=16.3
Q ss_pred EEEEEEccCCchHHHHHHHHh
Q 038861 26 SVISIIGMGGVGKTTLAQLVY 46 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~ 46 (1165)
+++.|.|++|.|||+++.+..
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i 31 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARI 31 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 478889999999996654444
No 419
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.41 E-value=0.085 Score=56.86 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=18.7
Q ss_pred EEEEccCCchHHHHHHHHhCC
Q 038861 28 ISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 28 v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
+++.|++|+||||+++.+...
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999853
No 420
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.40 E-value=0.14 Score=51.56 Aligned_cols=41 Identities=27% Similarity=0.265 Sum_probs=26.1
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccC--------CceEEEEEcCC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHF--------EIKAWTFVSED 66 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f--------~~~~w~~~~~~ 66 (1165)
.++.|.|++|+||||++.+++........| ..++|+.....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 478999999999999998887543222222 35567665544
No 421
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.34 E-value=0.33 Score=53.62 Aligned_cols=21 Identities=48% Similarity=0.763 Sum_probs=19.2
Q ss_pred EEEEEEccCCchHHHHHHHHh
Q 038861 26 SVISIIGMGGVGKTTLAQLVY 46 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~ 46 (1165)
..++|.|++|.||||||+.+.
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lv 383 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLV 383 (580)
T ss_pred ceEEEECCCCccHHHHHHHHH
Confidence 378999999999999999985
No 422
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.29 E-value=0.16 Score=52.01 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.9
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
-.+++|.|+.|+|||||.+.++.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999975
No 423
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.28 E-value=0.073 Score=56.87 Aligned_cols=49 Identities=20% Similarity=0.175 Sum_probs=33.3
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHH
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKS 75 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~ 75 (1165)
.+++.+.|.|||||||+|.+.+- ........+.-+......+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999987652 33333344666666665555554443
No 424
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.28 E-value=0.14 Score=53.73 Aligned_cols=113 Identities=19% Similarity=0.038 Sum_probs=57.1
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccC--CCC-----C-CCCHHHHHHH
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISN--VTV-----N-DNDLNSLQEK 96 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~--~~~-----~-~~~~~~~~~~ 96 (1165)
..-++|.|+.|.||||+.+.++.... ...+.+++.-.+-..+ +...+++..... +.. + ...... ..-
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~~v~~~-d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k-~~~ 185 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGKKVGIV-DERSEIAGCVNGVPQHDVGIRTDVLDGCPK-AEG 185 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCEEeecc-hhHHHHHHHhcccccccccccccccccchH-HHH
Confidence 46789999999999999999985321 2223333321111000 001222221111 000 0 001111 112
Q ss_pred HHHHh-cCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCchHHH
Q 038861 97 LEKEL-IKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRVVA 147 (1165)
Q Consensus 97 l~~~l-~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~~~ 147 (1165)
+...+ ...+-++++|.+. ....+..+...+ ..|..||+||-...+.
T Consensus 186 ~~~~i~~~~P~villDE~~--~~e~~~~l~~~~---~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 186 MMMLIRSMSPDVIVVDEIG--REEDVEALLEAL---HAGVSIIATAHGRDVE 232 (270)
T ss_pred HHHHHHhCCCCEEEEeCCC--cHHHHHHHHHHH---hCCCEEEEEechhHHH
Confidence 22222 2577899999983 334455554443 2477889888876554
No 425
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.24 E-value=0.083 Score=51.90 Aligned_cols=21 Identities=43% Similarity=0.629 Sum_probs=19.4
Q ss_pred EEEEEccCCchHHHHHHHHhC
Q 038861 27 VISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+|+|.|.+|+||||+|+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999985
No 426
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.24 E-value=0.11 Score=52.26 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.1
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhC
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+..+|+|+|++|+||||+|+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999985
No 427
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.20 E-value=0.18 Score=60.41 Aligned_cols=84 Identities=18% Similarity=0.085 Sum_probs=55.5
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCC-----CCCCCHHHHHHHH
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVT-----VNDNDLNSLQEKL 97 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 97 (1165)
...+++-|+|++|+||||||.+++. .....-..++|++....++.. .++.++... ......+.....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~--~a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVA--NAQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 3467899999999999999988763 233344567888877766642 455554321 1334445555556
Q ss_pred HHHhc-CceEEEEEeCC
Q 038861 98 EKELI-KKKFLLVLDDM 113 (1165)
Q Consensus 98 ~~~l~-~~~~LlvlDdv 113 (1165)
...++ ++.-++|+|-+
T Consensus 131 ~~lv~~~~~~LVVIDSI 147 (790)
T PRK09519 131 DMLIRSGALDIVVIDSV 147 (790)
T ss_pred HHHhhcCCCeEEEEcch
Confidence 65554 45678999988
No 428
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=94.17 E-value=0.23 Score=49.31 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCchHHHHHHHHhC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
...+++|.|.+|.||||+|+.+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~ 40 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEK 40 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999985
No 429
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.16 E-value=0.26 Score=51.05 Aligned_cols=40 Identities=18% Similarity=0.103 Sum_probs=29.1
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSE 65 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~ 65 (1165)
.-.++.|.|.+|+||||+|.+++.. ....-..++|++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~--~~~~g~~~~~is~e~ 58 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYK--GLRDGDPVIYVTTEE 58 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH--HHhcCCeEEEEEccC
Confidence 4578999999999999999887642 222345677877643
No 430
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.16 E-value=0.17 Score=56.92 Aligned_cols=87 Identities=20% Similarity=0.162 Sum_probs=51.4
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCC-CHHHHHHHHHHhccCC-------CCCCCCHHH-----
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDF-DVFRVTKSILMSISNV-------TVNDNDLNS----- 92 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~----- 92 (1165)
..++|.|.+|+|||||+.++++.... .+-+.++++-++... .+.++...+...-... ..+.....+
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~ 222 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVL 222 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHH
Confidence 45899999999999999988864322 245566666665543 4555555554321110 011111111
Q ss_pred HHHHHHHHh---cCceEEEEEeCC
Q 038861 93 LQEKLEKEL---IKKKFLLVLDDM 113 (1165)
Q Consensus 93 ~~~~l~~~l---~~~~~LlvlDdv 113 (1165)
.+..+.+++ +++.+|+++|++
T Consensus 223 ~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 223 TGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHhcCCceEEEeccc
Confidence 122344454 378999999999
No 431
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.15 E-value=0.42 Score=50.20 Aligned_cols=130 Identities=6% Similarity=-0.032 Sum_probs=71.2
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhc------------cCCceEEEEEcCCCCHHHHHH
Q 038861 7 KDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRR------------HFEIKAWTFVSEDFDVFRVTK 74 (1165)
Q Consensus 7 ~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~------------~f~~~~w~~~~~~~~~~~~~~ 74 (1165)
-+.+...+..+. -.....++|+.|+||+++|.+++... .+. ..+...|+.-...
T Consensus 6 ~~~L~~~i~~~r-----l~HAyLf~G~~G~Gk~~lA~~~A~~l-lC~~~~~~c~~~~~~~HPD~~~i~p~~~-------- 71 (290)
T PRK05917 6 WEALIQRVRDQK-----VPSAIILHGQDLSNLSARAYELASLI-LKETSPEAAYKISQKIHPDIHEFSPQGK-------- 71 (290)
T ss_pred HHHHHHHHHcCC-----cCeeEeeECCCCCcHHHHHHHHHHHH-hCCCCccHHHHHhcCCCCCEEEEecCCC--------
Confidence 345566664432 24567899999999999998887421 111 0111111110000
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHh-----cCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCch-HHHH
Q 038861 75 SILMSISNVTVNDNDLNSLQEKLEKEL-----IKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNR-VVAE 148 (1165)
Q Consensus 75 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~-~~~~ 148 (1165)
...-..++. +.+.+.+ .++.-++|+|+++..+...+..+...+...++++.+|++|.+. .+..
T Consensus 72 ----------~~~I~idqi-R~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~ 140 (290)
T PRK05917 72 ----------GRLHSIETP-RAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPP 140 (290)
T ss_pred ----------CCcCcHHHH-HHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcH
Confidence 001123332 2333333 2455688999997777777777777777666777777766664 3433
Q ss_pred hh-cccceeeCCCC
Q 038861 149 RV-GSVREYPLGEL 161 (1165)
Q Consensus 149 ~~-~~~~~~~l~~l 161 (1165)
.. .....+.+.++
T Consensus 141 TI~SRcq~~~~~~~ 154 (290)
T PRK05917 141 TIRSRSLSIHIPME 154 (290)
T ss_pred HHHhcceEEEccch
Confidence 32 22345566554
No 432
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=94.13 E-value=0.15 Score=59.99 Aligned_cols=22 Identities=32% Similarity=0.297 Sum_probs=19.7
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
++..|.|.+|+||||++..+..
T Consensus 161 ~~~vitGgpGTGKTt~v~~ll~ 182 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVARLLL 182 (586)
T ss_pred CeEEEEcCCCCCHHHHHHHHHH
Confidence 5889999999999999988864
No 433
>PRK03839 putative kinase; Provisional
Probab=94.13 E-value=0.037 Score=54.82 Aligned_cols=22 Identities=45% Similarity=0.765 Sum_probs=19.7
Q ss_pred EEEEEccCCchHHHHHHHHhCC
Q 038861 27 VISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
.|.|.|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999854
No 434
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.12 E-value=0.04 Score=55.18 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.3
Q ss_pred CcEEEEEEccCCchHHHHHHHHhC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
..++|+|.|++|+||||+|+.++.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999884
No 435
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.11 E-value=0.33 Score=49.90 Aligned_cols=23 Identities=39% Similarity=0.484 Sum_probs=20.6
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
-.+++|.|+.|.|||||++.+.-
T Consensus 30 G~~~~i~G~nGsGKSTLl~~i~G 52 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAG 52 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999874
No 436
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.04 E-value=0.027 Score=57.43 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=20.4
Q ss_pred CcEEEEEEccCCchHHHHHHHHh
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVY 46 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~ 46 (1165)
+.+++.|+|+.|.||||+.+.+.
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~ 51 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIG 51 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHH
Confidence 45789999999999999988875
No 437
>COG4240 Predicted kinase [General function prediction only]
Probab=94.04 E-value=0.16 Score=49.29 Aligned_cols=84 Identities=14% Similarity=0.030 Sum_probs=50.9
Q ss_pred CCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccC-----CCCCCCCHHHHHHH
Q 038861 22 DDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISN-----VTVNDNDLNSLQEK 96 (1165)
Q Consensus 22 ~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~~ 96 (1165)
.+++-+++|.|+-|.||||++..++.....++. +.+...+..+-+-...-...++++... .....-+..-....
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 356889999999999999999999864333332 456666655544444444455555321 11233445555566
Q ss_pred HHHHhcCceE
Q 038861 97 LEKELIKKKF 106 (1165)
Q Consensus 97 l~~~l~~~~~ 106 (1165)
+....+++.-
T Consensus 126 Lnai~~g~~~ 135 (300)
T COG4240 126 LNAIARGGPT 135 (300)
T ss_pred HHHHhcCCCC
Confidence 6666666643
No 438
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.04 E-value=0.26 Score=54.71 Aligned_cols=84 Identities=17% Similarity=0.244 Sum_probs=48.0
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCC-CHHHHHHHHHHhccCCC-------CCCCCHHH-----
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDF-DVFRVTKSILMSISNVT-------VNDNDLNS----- 92 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~~----- 92 (1165)
..++|.|..|+|||||++.++... ..+.++.+-+++.. .+.++.+..+..-.... .+.....+
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCE 238 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHH
Confidence 468999999999999999998531 22445555555543 34445555433211110 11111111
Q ss_pred HHHHHHHHh--cCceEEEEEeCC
Q 038861 93 LQEKLEKEL--IKKKFLLVLDDM 113 (1165)
Q Consensus 93 ~~~~l~~~l--~~~~~LlvlDdv 113 (1165)
.+-.+.+++ +++.+|+++||+
T Consensus 239 ~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 239 TATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCh
Confidence 111233444 578999999999
No 439
>PRK00625 shikimate kinase; Provisional
Probab=93.99 E-value=0.039 Score=53.48 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=19.1
Q ss_pred EEEEEccCCchHHHHHHHHhC
Q 038861 27 VISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.|.|+||+|+||||+|+.++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999975
No 440
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.95 E-value=0.4 Score=47.22 Aligned_cols=24 Identities=38% Similarity=0.527 Sum_probs=20.8
Q ss_pred EEEEEEccCCchHHHHHHHHhCCc
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDD 49 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~ 49 (1165)
.+.+|-||.|.||||||..+.-++
T Consensus 31 EvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 31 EVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999986543
No 441
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=93.93 E-value=0.34 Score=52.51 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.6
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
-.+++|.|+.|.|||||.+.+.-
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~G 50 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITG 50 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999874
No 442
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.93 E-value=0.38 Score=54.95 Aligned_cols=82 Identities=21% Similarity=0.198 Sum_probs=46.2
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCC-----CCCCHHHHHHHHH
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTV-----NDNDLNSLQEKLE 98 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 98 (1165)
...++.|.|.+|+|||||+.+++.. ....-..++|++... +..++... ++.++.... ...+.+++...++
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ee--s~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEE--SASQIKLR-AERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccc--cHHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 3568999999999999999998853 222334567776543 33443322 344432110 1223333333332
Q ss_pred HHhcCceEEEEEeCC
Q 038861 99 KELIKKKFLLVLDDM 113 (1165)
Q Consensus 99 ~~l~~~~~LlvlDdv 113 (1165)
+ .+.-++|+|.+
T Consensus 154 ~---~~~~lVVIDSI 165 (446)
T PRK11823 154 E---EKPDLVVIDSI 165 (446)
T ss_pred h---hCCCEEEEech
Confidence 2 24557788876
No 443
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.89 E-value=0.15 Score=59.23 Aligned_cols=49 Identities=20% Similarity=0.127 Sum_probs=33.9
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHH
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKS 75 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~ 75 (1165)
.+-.++.|.|++|+|||||+.+++.. ....-+.++++.... +..++...
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~eE--s~~~i~~~ 309 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFAYEE--SRAQLLRN 309 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeC--CHHHHHHH
Confidence 34578999999999999999998853 333445666766443 44455444
No 444
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.89 E-value=0.073 Score=55.06 Aligned_cols=85 Identities=26% Similarity=0.213 Sum_probs=49.3
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhcc-CCceEEEEEcCCCCHHHHHHHHHHhccCC---------------CCC-
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRH-FEIKAWTFVSEDFDVFRVTKSILMSISNV---------------TVN- 86 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~w~~~~~~~~~~~~~~~i~~~l~~~---------------~~~- 86 (1165)
...++.|.|++|+|||++|.+++.. .... -+.++|++.... ..++.+.+. .++.. ...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~--~~~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYN--GLKNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH--hhhhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEeccccc
Confidence 4568999999999999999988742 2233 456778776443 344444432 22210 000
Q ss_pred ----CCCHHHHHHHHHHHhcC-ceEEEEEeCC
Q 038861 87 ----DNDLNSLQEKLEKELIK-KKFLLVLDDM 113 (1165)
Q Consensus 87 ----~~~~~~~~~~l~~~l~~-~~~LlvlDdv 113 (1165)
..+.+.....+.+.++. +...+|+|.+
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 24556666666655543 3367888876
No 445
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.88 E-value=0.054 Score=49.91 Aligned_cols=23 Identities=43% Similarity=0.658 Sum_probs=20.6
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.++|+|+|.+|+||||+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 57999999999999999988774
No 446
>PRK15453 phosphoribulokinase; Provisional
Probab=93.88 E-value=0.3 Score=50.52 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.4
Q ss_pred CcEEEEEEccCCchHHHHHHHHhC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+..+|+|.|.+|+||||+|+.+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998873
No 447
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.87 E-value=0.038 Score=54.07 Aligned_cols=22 Identities=41% Similarity=0.622 Sum_probs=19.7
Q ss_pred EEEEEccCCchHHHHHHHHhCC
Q 038861 27 VISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
+|+|.|.+|.||||+|+.++..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999853
No 448
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.87 E-value=0.046 Score=53.76 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=20.3
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
++|.+.|++|+||||+|+++..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999985
No 449
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.86 E-value=0.31 Score=52.37 Aligned_cols=82 Identities=23% Similarity=0.201 Sum_probs=50.5
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCC-----CCCCHHHHHHHHH
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTV-----NDNDLNSLQEKLE 98 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 98 (1165)
+-.+|.|-|-+|||||||..+++.+ ..... .+.+|+. ..+..++-- -++.++.... ...+.+.+...+.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsG--EES~~Qikl-RA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSG--EESLQQIKL-RADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeC--CcCHHHHHH-HHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 3468999999999999999999853 33333 5666653 334433322 2344443221 2344555555444
Q ss_pred HHhcCceEEEEEeCCC
Q 038861 99 KELIKKKFLLVLDDMW 114 (1165)
Q Consensus 99 ~~l~~~~~LlvlDdv~ 114 (1165)
+ .++-++|+|-+.
T Consensus 166 ~---~~p~lvVIDSIQ 178 (456)
T COG1066 166 Q---EKPDLVVIDSIQ 178 (456)
T ss_pred h---cCCCEEEEeccc
Confidence 4 578899999883
No 450
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.86 E-value=0.046 Score=54.00 Aligned_cols=24 Identities=38% Similarity=0.546 Sum_probs=21.1
Q ss_pred cEEEEEEccCCchHHHHHHHHhCC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
...|.|+|++|+||||+|++++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999853
No 451
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.85 E-value=0.0057 Score=72.47 Aligned_cols=194 Identities=26% Similarity=0.266 Sum_probs=111.3
Q ss_pred CCccEEEEcCCCCchh---hhhhcccCccceeeeecc-cccccCC----cccCCCCCCCEEEEeCCCCCc-cccCCC-CC
Q 038861 962 QALKYLEVSYCSKLES---LAERLDNTSLEVIAISYL-ENLKSLP----AGLHNLHHLQELKVYGCPNLE-SFPEGG-LP 1031 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~---~~~~~~~~~L~~L~L~~n-~~~~~~p----~~~~~l~~L~~L~L~~n~~~~-~~~~~~-~~ 1031 (1165)
+.|+.|.+.+|..... .+.....+.|+.|+++++ ......+ .....+.+|+.|+++++.... ..-..+ ..
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 5688888888876664 233444499999999873 2222222 234456889999999888422 211122 22
Q ss_pred CCCcCeEEeecCCC-CCc-CCcccCCCCCCceeeeccCCCCccc--CCC-CCCCCcceEEEecCCC---C----------
Q 038861 1032 STKLTKLTIGYCEN-LKA-LPNCMHNLTSLLHLEIGWCRSLVSF--PED-GFPTNLESLEVHDLKI---S---------- 1093 (1165)
Q Consensus 1032 l~~L~~L~L~~n~~-~~~-~~~~~~~l~~L~~L~l~~n~~~~~~--p~~-~~~~~L~~L~l~~n~~---~---------- 1093 (1165)
+++|+.|.+.+|.. +.. +......+++|++|++++|...+.- ... ..+++|+.|.+..... .
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~ 347 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLT 347 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhc
Confidence 67899999888874 221 1223356788999999988775221 111 2355555554443331 0
Q ss_pred -C--cccccccccCCCCcEEEEecCCCCcccCCCCCCccc-EEEecCCCCc-ccHHHhhhcCCccceEeecCCCCC
Q 038861 1094 -K--PLFEWGLNKFSSLRELQITGGCPVLLSSPWFPASLT-VLHISYMPNL-ESLSLIVENLTSLEILILCKCPKL 1164 (1165)
Q Consensus 1094 -~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~-~L~l~~~~~l-~~l~~~~~~l~~L~~L~l~~c~~l 1164 (1165)
. .........+++++.+.+..... .... .+.+.+|+.+ ..+.........++.|+++.|...
T Consensus 348 ~~~d~~~~~~~~~~~~l~~~~l~~~~~---------~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~ 414 (482)
T KOG1947|consen 348 LTSDDLAELILRSCPKLTDLSLSYCGI---------SDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLV 414 (482)
T ss_pred cCchhHhHHHHhcCCCcchhhhhhhhc---------cCcchHHHhcCCcccchHHHHHhccCCccceEecccCccc
Confidence 0 12222344556666666654221 1111 4567777877 455544555555888888888754
No 452
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.84 E-value=0.38 Score=49.57 Aligned_cols=22 Identities=27% Similarity=0.620 Sum_probs=20.1
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+++|.|+.|.|||||++.++-
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999998864
No 453
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.83 E-value=0.038 Score=52.78 Aligned_cols=22 Identities=27% Similarity=0.649 Sum_probs=19.3
Q ss_pred EEEEEccCCchHHHHHHHHhCC
Q 038861 27 VISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
++.|.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3789999999999999998853
No 454
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.82 E-value=0.38 Score=54.95 Aligned_cols=39 Identities=26% Similarity=0.145 Sum_probs=28.4
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEc
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVS 64 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~ 64 (1165)
.-.++.|.|.+|+|||||+.+++.. ....-..++|++..
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs~E 131 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVSGE 131 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEECc
Confidence 4578999999999999999998753 22222356777654
No 455
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.79 E-value=0.082 Score=60.86 Aligned_cols=54 Identities=28% Similarity=0.401 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEE
Q 038861 4 KKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTF 62 (1165)
Q Consensus 4 ~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~ 62 (1165)
.+-++++..||...-. +....+++.++||+|+||||.++.++++. .|+..-|.+
T Consensus 25 kkKv~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~el----g~~v~Ew~n 78 (519)
T PF03215_consen 25 KKKVEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKEL----GFEVQEWIN 78 (519)
T ss_pred HHHHHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHHh----CCeeEEecC
Confidence 3557788888875432 23345799999999999999999998542 344444643
No 456
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.79 E-value=0.089 Score=59.39 Aligned_cols=87 Identities=21% Similarity=0.198 Sum_probs=45.2
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceE-EEEEcCCC-CHHHHHHHHHHhccCCCCCCCCHH-----HHHHHHH
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKA-WTFVSEDF-DVFRVTKSILMSISNVTVNDNDLN-----SLQEKLE 98 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~-w~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~-----~~~~~l~ 98 (1165)
..++|+|++|+|||||++.+++... ..+-+..+ .+-+.+.. .+.++.+.+-.++-....+..... ...-.+.
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~-~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~A 495 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAIT-TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERA 495 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHh-hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHH
Confidence 4579999999999999999986321 12223333 33444433 233333322111111111111111 1122233
Q ss_pred HHh--cCceEEEEEeCC
Q 038861 99 KEL--IKKKFLLVLDDM 113 (1165)
Q Consensus 99 ~~l--~~~~~LlvlDdv 113 (1165)
+++ .++.+||++|++
T Consensus 496 e~fre~G~dVlillDSl 512 (672)
T PRK12678 496 KRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHcCCCEEEEEeCc
Confidence 444 578999999998
No 457
>PLN02348 phosphoribulokinase
Probab=93.79 E-value=0.23 Score=54.16 Aligned_cols=27 Identities=33% Similarity=0.477 Sum_probs=23.4
Q ss_pred CCCcEEEEEEccCCchHHHHHHHHhCC
Q 038861 22 DDGFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 22 ~~~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
..++.+|+|.|.+|.||||+|+.+...
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~ 72 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSV 72 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999999999999853
No 458
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.77 E-value=0.58 Score=48.71 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=20.4
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
..+++|.|+.|.|||||++.++-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (234)
T cd03251 28 GETVALVGPSGSGKSTLVNLIPR 50 (234)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999998864
No 459
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.77 E-value=0.2 Score=54.97 Aligned_cols=48 Identities=27% Similarity=0.322 Sum_probs=33.5
Q ss_pred CCchHHHHHHHHHHhcC--------CCCCCCCcEEEEEEccCCchHHHHHHHHhCC
Q 038861 1 YGRKKDKDEIVELLLRD--------DSRADDGFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~--------~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
||.++.+..+.-++... .-...-.++-|.++|++|+|||++|+.++..
T Consensus 15 iGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 15 IGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred cCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 57888888876555431 0001123467899999999999999999853
No 460
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=93.77 E-value=0.27 Score=50.62 Aligned_cols=97 Identities=21% Similarity=0.215 Sum_probs=64.0
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCc
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKK 104 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 104 (1165)
.+.+.++|++|+|||+-++.+++. .+..+.+..+..++...+...+....... ...........+...+++.
T Consensus 94 g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~~~~--~~~~~~d~~~~~~~~l~~~ 165 (297)
T COG2842 94 GSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAAFGA--TDGTINDLTERLMIRLRDT 165 (297)
T ss_pred CceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHccC
Confidence 348899999999999999999853 12222344555555555555555544332 2344556666777777888
Q ss_pred eEEEEEeCCCCCCccchhhhhcccC
Q 038861 105 KFLLVLDDMWNENYNDWELLNRPFK 129 (1165)
Q Consensus 105 ~~LlvlDdv~~~~~~~~~~l~~~~~ 129 (1165)
.-+++.|+.+.-....++.+.....
T Consensus 166 ~~~iivDEA~~L~~~ale~lr~i~d 190 (297)
T COG2842 166 VRLIIVDEADRLPYRALEELRRIHD 190 (297)
T ss_pred cceeeeehhhccChHHHHHHHHHHH
Confidence 8899999997666666666655443
No 461
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.75 E-value=0.16 Score=51.93 Aligned_cols=77 Identities=17% Similarity=0.058 Sum_probs=40.7
Q ss_pred EEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCC--HHHHHHHHHHh----ccCCC--CCCCCHHHHHHHHH
Q 038861 27 VISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFD--VFRVTKSILMS----ISNVT--VNDNDLNSLQEKLE 98 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~--~~~~~~~i~~~----l~~~~--~~~~~~~~~~~~l~ 98 (1165)
+|+|.|.+|+||||+|+++... .+..-..+..+....-.. -...-+.+..+ ..-.. .+..+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~--l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHI--FAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHH--HHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 5899999999999999988742 222211233343332221 11211111211 11112 34566677777777
Q ss_pred HHhcCce
Q 038861 99 KELIKKK 105 (1165)
Q Consensus 99 ~~l~~~~ 105 (1165)
...+++.
T Consensus 79 ~L~~g~~ 85 (277)
T cd02029 79 TYGETGR 85 (277)
T ss_pred HHHcCCC
Confidence 7666543
No 462
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.74 E-value=0.075 Score=56.27 Aligned_cols=50 Identities=24% Similarity=0.134 Sum_probs=37.7
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHH
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSI 76 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i 76 (1165)
+.-+++.|+|.+|+|||++|.++.. +.......++|++.... ..++.+..
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~--~~~l~~~~ 70 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES--PEELLENA 70 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC--HHHHHHHH
Confidence 4567999999999999999999984 45555888999987654 34444443
No 463
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.74 E-value=0.19 Score=48.78 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=18.4
Q ss_pred EEEEccCCchHHHHHHHHhCC
Q 038861 28 ISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 28 v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
|+|.|++|+||||+|+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999998853
No 464
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.73 E-value=0.38 Score=53.91 Aligned_cols=87 Identities=18% Similarity=0.214 Sum_probs=48.3
Q ss_pred EEEEEEccCCchHHHHH-HHHhCCcchh-----ccCCceEEEEEcCCCC-HHHHHHHHHHhccC-CC-------CCCCCH
Q 038861 26 SVISIIGMGGVGKTTLA-QLVYKDDRVR-----RHFEIKAWTFVSEDFD-VFRVTKSILMSISN-VT-------VNDNDL 90 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa-~~~~~~~~~~-----~~f~~~~w~~~~~~~~-~~~~~~~i~~~l~~-~~-------~~~~~~ 90 (1165)
..++|.|.+|+|||+|| ..+.++..+. ++-..++++-+++..+ +.+ ..+.+++-+. .. .+....
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~e-i~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVAR-IHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHH-HHHHHHhcCCccceEEEEECCCCCHH
Confidence 45799999999999997 5666543221 2334566777776543 333 3333333221 00 011111
Q ss_pred HH-----HHHHHHHHh--cCceEEEEEeCC
Q 038861 91 NS-----LQEKLEKEL--IKKKFLLVLDDM 113 (1165)
Q Consensus 91 ~~-----~~~~l~~~l--~~~~~LlvlDdv 113 (1165)
.+ ....+.+++ +++.+|+|+||+
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDL 298 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDL 298 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCc
Confidence 11 111233333 578999999999
No 465
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.73 E-value=0.31 Score=48.83 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.1
Q ss_pred cEEEEEEccCCchHHHHHHHHhCC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
-.+++|.|+.|.|||||.+.++.-
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998753
No 466
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.72 E-value=0.69 Score=43.07 Aligned_cols=84 Identities=13% Similarity=0.095 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHhccCCCC------CCCCHHHHHHHHHHHhcCceEEEEEeCC----CCCCccchhhhhcccCCCCCCcEE
Q 038861 68 DVFRVTKSILMSISNVTV------NDNDLNSLQEKLEKELIKKKFLLVLDDM----WNENYNDWELLNRPFKAGTSGSKI 137 (1165)
Q Consensus 68 ~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~~~~LlvlDdv----~~~~~~~~~~l~~~~~~~~~~~~i 137 (1165)
+.....+.++.+++...- +-..-++..-.+.+.+...+-+++-|.- +..+-.+..++.-.+ ....|...
T Consensus 122 ~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~l-nre~G~Tl 200 (228)
T COG4181 122 DSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFAL-NRERGTTL 200 (228)
T ss_pred cHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHH-hhhcCceE
Confidence 455566667766654321 2233344445567778888888888865 222223333333222 23468888
Q ss_pred EEecCchHHHHhhcc
Q 038861 138 IVTTRNRVVAERVGS 152 (1165)
Q Consensus 138 iiTtR~~~~~~~~~~ 152 (1165)
++.|-++.++..+..
T Consensus 201 VlVTHD~~LA~Rc~R 215 (228)
T COG4181 201 VLVTHDPQLAARCDR 215 (228)
T ss_pred EEEeCCHHHHHhhhh
Confidence 888888888877653
No 467
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.71 E-value=0.14 Score=49.34 Aligned_cols=79 Identities=15% Similarity=0.101 Sum_probs=42.3
Q ss_pred EEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcC--ce
Q 038861 28 ISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIK--KK 105 (1165)
Q Consensus 28 v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~--~~ 105 (1165)
+.|.|.+|.|||++|.+++.. ....++++.-....+.+ ..+.+.+-.... .......+....+.+.+.. +.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R-~~~w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRR-PAHWRTIETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhC-CCCceEeecHHHHHHHHHhcCCC
Confidence 689999999999999998743 22355666555555443 333322211111 1122222223333333321 23
Q ss_pred EEEEEeCC
Q 038861 106 FLLVLDDM 113 (1165)
Q Consensus 106 ~LlvlDdv 113 (1165)
-.+++|.+
T Consensus 75 ~~VLIDcl 82 (169)
T cd00544 75 DVVLIDCL 82 (169)
T ss_pred CEEEEEcH
Confidence 37999987
No 468
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=93.71 E-value=0.32 Score=58.87 Aligned_cols=132 Identities=16% Similarity=0.205 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCC
Q 038861 5 KDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVT 84 (1165)
Q Consensus 5 ~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~ 84 (1165)
..+.+|.+.+... .++.|.|..|.||||-.-+++.+.-. ...+.|-++-.+......+...++++++...
T Consensus 53 ~~~~~i~~ai~~~--------~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~ 122 (845)
T COG1643 53 AVRDEILKAIEQN--------QVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKL 122 (845)
T ss_pred HHHHHHHHHHHhC--------CEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCc
Confidence 4567777777543 48999999999999999877743221 2234455544444566678888888887532
Q ss_pred C----------CC---------CCHHHHHHHHH-HHhcCceEEEEEeCCCCCCccc---hhhhhcccCCCCCCcEEEEec
Q 038861 85 V----------ND---------NDLNSLQEKLE-KELIKKKFLLVLDDMWNENYND---WELLNRPFKAGTSGSKIIVTT 141 (1165)
Q Consensus 85 ~----------~~---------~~~~~~~~~l~-~~l~~~~~LlvlDdv~~~~~~~---~~~l~~~~~~~~~~~~iiiTt 141 (1165)
. +. .+...+..+++ ...-.+=-.+|+|.+++.+... ...+...+....+--||||+|
T Consensus 123 G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimS 202 (845)
T COG1643 123 GETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMS 202 (845)
T ss_pred CceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 1 11 11122223332 1112233489999998764321 111222122233358999999
Q ss_pred CchHH
Q 038861 142 RNRVV 146 (1165)
Q Consensus 142 R~~~~ 146 (1165)
-.-+.
T Consensus 203 ATld~ 207 (845)
T COG1643 203 ATLDA 207 (845)
T ss_pred cccCH
Confidence 86543
No 469
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.71 E-value=0.24 Score=55.54 Aligned_cols=87 Identities=20% Similarity=0.163 Sum_probs=50.2
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCC-CHHHHHHHHHHhccCC-------CCCCCCHHH-----
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDF-DVFRVTKSILMSISNV-------TVNDNDLNS----- 92 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~----- 92 (1165)
..++|.|.+|+|||||+.+++..... ++=+.++++-++... .+.++.+.+...=... ..+.....+
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~ 223 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVAL 223 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 45899999999999999988743221 111345566665543 4555666655421111 011111111
Q ss_pred HHHHHHHHh---cCceEEEEEeCC
Q 038861 93 LQEKLEKEL---IKKKFLLVLDDM 113 (1165)
Q Consensus 93 ~~~~l~~~l---~~~~~LlvlDdv 113 (1165)
..-.+.+++ +++.+|+++|++
T Consensus 224 ~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 224 TGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHhcCCceEEEecch
Confidence 122344555 578999999999
No 470
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.67 E-value=0.051 Score=53.80 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.3
Q ss_pred EEEEEEccCCchHHHHHHHHhCC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
++++|.|++|+||||+++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998753
No 471
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.65 E-value=0.3 Score=48.88 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.7
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
-.+++|.|+.|.|||||++.++-
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999984
No 472
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.64 E-value=0.06 Score=51.12 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=21.6
Q ss_pred cEEEEEEccCCchHHHHHHHHhCC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
..++.|.||+|+|||||++++..+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999965
No 473
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.64 E-value=0.097 Score=51.34 Aligned_cols=47 Identities=30% Similarity=0.227 Sum_probs=32.5
Q ss_pred CchHHHHHHHHHHhcCC-------CCCCCCcEEEEEEccCCchHHHHHHHHhCC
Q 038861 2 GRKKDKDEIVELLLRDD-------SRADDGFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 2 GR~~~~~~l~~~l~~~~-------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
|-|-.++++.+.+.-.- ..+-++++=|.++|++|.|||-||++|+++
T Consensus 159 gld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 159 GLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred cchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 34555666665553110 013456777899999999999999999975
No 474
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.63 E-value=0.13 Score=45.71 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=23.6
Q ss_pred CCCCcEEEEEEccCCchHHHHHHHHhCC
Q 038861 21 ADDGFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 21 ~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
...++-|+..+|++|+|||-+|+.+++.
T Consensus 49 ~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 49 NPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred CCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 3456788999999999999999888764
No 475
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.62 E-value=0.22 Score=53.78 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=22.2
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhC
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
++..+|+|.|.+|+||||++..+..
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999998874
No 476
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.59 E-value=0.067 Score=52.78 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.2
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
+.++|.|.|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4678999999999999999999853
No 477
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.58 E-value=0.055 Score=53.75 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.4
Q ss_pred cEEEEEEccCCchHHHHHHHHhCC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
..+|.|.|++|+||||+|+.++..
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999853
No 478
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.58 E-value=0.051 Score=52.38 Aligned_cols=21 Identities=52% Similarity=0.648 Sum_probs=18.0
Q ss_pred EEEEccCCchHHHHHHHHhCC
Q 038861 28 ISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 28 v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
|.|+|.+|+||||+++.++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 789999999999999999853
No 479
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.56 E-value=0.045 Score=54.42 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=19.1
Q ss_pred EEEEEccCCchHHHHHHHHhC
Q 038861 27 VISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+|.|.|++|+||||+|+.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999884
No 480
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.55 E-value=0.14 Score=60.57 Aligned_cols=72 Identities=13% Similarity=0.069 Sum_probs=51.2
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
+|.++.++.+...+... +.+.++|++|+||||+|+.++... ....++..+|..- ...+...+++.+..++
T Consensus 34 igq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~n-p~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 34 IGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPN-PEDPNNPKIRTVPAGK 103 (637)
T ss_pred CChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeC-CCcchHHHHHHHHHhc
Confidence 47777777777766432 258999999999999999998542 2334567778654 4447777788877766
Q ss_pred cC
Q 038861 81 SN 82 (1165)
Q Consensus 81 ~~ 82 (1165)
+.
T Consensus 104 G~ 105 (637)
T PRK13765 104 GK 105 (637)
T ss_pred CH
Confidence 54
No 481
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.54 E-value=0.08 Score=56.88 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=27.2
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCH
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDV 69 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~ 69 (1165)
|++.+.|-||+||||+|.+.+- .....-..+.-++.....+.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~--~~A~~G~rtLlvS~Dpa~~L 43 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALAL--ALARRGKRTLLVSTDPAHSL 43 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH--HHHHTTS-EEEEESSTTTHH
T ss_pred eEEEEecCCCCCcHHHHHHHHH--HHhhCCCCeeEeecCCCccH
Confidence 5899999999999999977763 23333334555554444333
No 482
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.52 E-value=0.047 Score=55.09 Aligned_cols=21 Identities=43% Similarity=0.656 Sum_probs=19.2
Q ss_pred EEEEEccCCchHHHHHHHHhC
Q 038861 27 VISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+|+|.|++|+||||+|+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 483
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.51 E-value=0.077 Score=50.90 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.1
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4579999999999999999999853
No 484
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.50 E-value=1.2 Score=45.10 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.0
Q ss_pred cEEEEEEccCCchHHHHHHHHhCC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
..+++|.|+.|.|||||++.++--
T Consensus 31 G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 31 GELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 358999999999999999998753
No 485
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.49 E-value=0.38 Score=46.70 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.4
Q ss_pred CcEEEEEEccCCchHHHHHHHHh
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVY 46 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~ 46 (1165)
.-+|.++.||+|.||||+.+.+-
T Consensus 32 ~~~VTAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 32 KNKVTALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred CCceEEEECCCCcCHHHHHHHHH
Confidence 45789999999999999998874
No 486
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.46 E-value=0.22 Score=52.43 Aligned_cols=81 Identities=15% Similarity=0.197 Sum_probs=44.4
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCce
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKKK 105 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 105 (1165)
.+|.|.|+.|.||||+++.+... +.. ....+ +.+.+..... ... ..++.. .........+.++..++..+
T Consensus 81 GlilisG~tGSGKTT~l~all~~--i~~-~~~~i-itiEdp~E~~--~~~-~~q~~v---~~~~~~~~~~~l~~~lR~~P 150 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSE--LNT-PEKNI-ITVEDPVEYQ--IPG-INQVQV---NEKAGLTFARGLRAILRQDP 150 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhh--hCC-CCCeE-EEECCCceec--CCC-ceEEEe---CCcCCcCHHHHHHHHhccCC
Confidence 47999999999999999888643 211 11122 2222211100 000 011111 11111235566777888889
Q ss_pred EEEEEeCCCCC
Q 038861 106 FLLVLDDMWNE 116 (1165)
Q Consensus 106 ~LlvlDdv~~~ 116 (1165)
-.|+++++.+.
T Consensus 151 D~i~vgEiR~~ 161 (264)
T cd01129 151 DIIMVGEIRDA 161 (264)
T ss_pred CEEEeccCCCH
Confidence 99999999554
No 487
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=93.45 E-value=0.38 Score=50.43 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=21.0
Q ss_pred cEEEEEEccCCchHHHHHHHHhCC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
-.+++|.|+.|.|||||++.++-.
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999753
No 488
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=93.44 E-value=0.052 Score=67.55 Aligned_cols=136 Identities=15% Similarity=0.114 Sum_probs=73.1
Q ss_pred EEEEEccCCchHHHHHHHHhCCc--chhccCCceEEEEEcCCC----CHH--HHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 038861 27 VISIIGMGGVGKTTLAQLVYKDD--RVRRHFEIKAWTFVSEDF----DVF--RVTKSILMSISNVTVNDNDLNSLQEKLE 98 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~~~--~~~~~f~~~~w~~~~~~~----~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 98 (1165)
-+.|.|.+|.||||+...++-.. +....-+..+++.+.... ... .+...+...+.... ...+......
T Consensus 224 ~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~----~~~~~~~~~~ 299 (824)
T COG5635 224 KLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQG----IAKQLIEAHQ 299 (824)
T ss_pred heeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccC----CcchhhHHHH
Confidence 68999999999999998776321 111122333444433111 111 12222222222211 1122222225
Q ss_pred HHhcCceEEEEEeCCCCCCccch----hhhhcccCCCCCCcEEEEecCchHHHHhhcccceeeCCCCCHHHHH
Q 038861 99 KELIKKKFLLVLDDMWNENYNDW----ELLNRPFKAGTSGSKIIVTTRNRVVAERVGSVREYPLGELSKEDCL 167 (1165)
Q Consensus 99 ~~l~~~~~LlvlDdv~~~~~~~~----~~l~~~~~~~~~~~~iiiTtR~~~~~~~~~~~~~~~l~~l~~~e~~ 167 (1165)
+.++..++++++|.++......- ..+...+ +.-+.+++|+|+|....-....+...+++..+.++.-.
T Consensus 300 e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~-~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~ 371 (824)
T COG5635 300 ELLKTGKLLLLLDGLDELEPKNQRALIREINKFL-QEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQIN 371 (824)
T ss_pred HHHhccchhhHhhccchhhhhhHHHHHHHHHHHh-hhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHH
Confidence 67888999999999866433221 2222222 33468899999988655444444556666666665443
No 489
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.41 E-value=0.12 Score=50.88 Aligned_cols=42 Identities=33% Similarity=0.329 Sum_probs=26.7
Q ss_pred EEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCH
Q 038861 27 VISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDV 69 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~ 69 (1165)
.|+|+|-||+||||+|..++... ...+-..+.-++...+++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l-~~~~~~~VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRL-LSKGGYNVLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHH-HhcCCceEEEEeCCCCCCh
Confidence 58999999999999998855322 2222123445555554443
No 490
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.40 E-value=0.11 Score=56.18 Aligned_cols=84 Identities=14% Similarity=0.072 Sum_probs=43.4
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhcc-CCCCCCCCHHHHHHHHHHHhcCc
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSIS-NVTVNDNDLNSLQEKLEKELIKK 104 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~~~l~~~l~~~ 104 (1165)
..+.|.|+.|.||||+++.+.... ... ..++.+.-........ .... .+. .............+.+...++..
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~--~~~-~~iv~ied~~El~~~~--~~~~-~l~~~~~~~~~~~~~~~~~l~~~Lr~~ 218 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEI--PKD-ERIITIEDTREIFLPH--PNYV-HLFYSKGGQGLAKVTPKDLLQSCLRMR 218 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccC--Ccc-ccEEEEcCccccCCCC--CCEE-EEEecCCCCCcCccCHHHHHHHHhcCC
Confidence 479999999999999999887532 111 1222221111111100 0000 000 00001111223455566777888
Q ss_pred eEEEEEeCCCC
Q 038861 105 KFLLVLDDMWN 115 (1165)
Q Consensus 105 ~~LlvlDdv~~ 115 (1165)
+-.+++|.+.+
T Consensus 219 pd~ii~gE~r~ 229 (308)
T TIGR02788 219 PDRIILGELRG 229 (308)
T ss_pred CCeEEEeccCC
Confidence 88899999954
No 491
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.38 E-value=0.39 Score=53.64 Aligned_cols=84 Identities=17% Similarity=0.234 Sum_probs=47.3
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCC-CHHHHHHHHHHhccCCC-------CCCCCHHH-----
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDF-DVFRVTKSILMSISNVT-------VNDNDLNS----- 92 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~~----- 92 (1165)
..++|.|..|+|||||++.++.... .+.++++-++... .+.++....+..-+... .+.....+
T Consensus 159 qri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~ 234 (442)
T PRK08927 159 QRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAY 234 (442)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHH
Confidence 4689999999999999999885322 2344455555443 34444444433211110 11111111
Q ss_pred HHHHHHHHh--cCceEEEEEeCC
Q 038861 93 LQEKLEKEL--IKKKFLLVLDDM 113 (1165)
Q Consensus 93 ~~~~l~~~l--~~~~~LlvlDdv 113 (1165)
..-.+.+++ +++.+|+++||+
T Consensus 235 ~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 235 LTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHCCCcEEEEEeCc
Confidence 111233444 578999999999
No 492
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.37 E-value=0.47 Score=49.71 Aligned_cols=52 Identities=13% Similarity=0.088 Sum_probs=35.0
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHH
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILM 78 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~ 78 (1165)
+-.++.|.|.+|+|||++|.+++.+. ...+-..++|++... +..++...+..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~-~~~~g~~vly~s~E~--~~~~~~~r~~~ 63 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENI-AKKQGKPVLFFSLEM--SKEQLLQRLLA 63 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHhCCCceEEEeCCC--CHHHHHHHHHH
Confidence 34689999999999999999887532 222234566766543 55666666543
No 493
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=93.36 E-value=0.087 Score=52.23 Aligned_cols=20 Identities=35% Similarity=0.298 Sum_probs=18.2
Q ss_pred EEEEEccCCchHHHHHHHHh
Q 038861 27 VISIIGMGGVGKTTLAQLVY 46 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~ 46 (1165)
++.|+|+.|.||||+.+.+.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred CEEEECCCCCcHHHHHHHHH
Confidence 47899999999999999887
No 494
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.35 E-value=0.1 Score=49.16 Aligned_cols=35 Identities=29% Similarity=0.509 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCC
Q 038861 5 KDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 5 ~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
+.+++|.+++.. +++++.|..|+|||||+..+..+
T Consensus 24 ~g~~~l~~~l~~---------k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLKG---------KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHTT---------SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhcC---------CEEEEECCCCCCHHHHHHHHHhh
Confidence 456777777732 58999999999999999999864
No 495
>PRK08149 ATP synthase SpaL; Validated
Probab=93.32 E-value=0.41 Score=53.39 Aligned_cols=84 Identities=15% Similarity=0.272 Sum_probs=48.4
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEc-CCCCHHHHHHHHHHhccCCC-------CCCCCHH-----H
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVS-EDFDVFRVTKSILMSISNVT-------VNDNDLN-----S 92 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~-~~~~~~~~~~~i~~~l~~~~-------~~~~~~~-----~ 92 (1165)
..++|.|.+|+|||||++.++.... -+.++...+. +..++.++..+......... .+..... .
T Consensus 152 q~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~ 227 (428)
T PRK08149 152 QRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAAL 227 (428)
T ss_pred CEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHH
Confidence 4689999999999999999886321 2232333333 33456666666655322111 1111111 1
Q ss_pred HHHHHHHHh--cCceEEEEEeCC
Q 038861 93 LQEKLEKEL--IKKKFLLVLDDM 113 (1165)
Q Consensus 93 ~~~~l~~~l--~~~~~LlvlDdv 113 (1165)
.+..+.+++ +++.+|+++||+
T Consensus 228 ~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 228 VATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHcCCCEEEEccch
Confidence 122233343 588999999999
No 496
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.32 E-value=0.28 Score=58.44 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.3
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
...++|+|+.|.|||||++.+..
T Consensus 361 G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 361 GERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35789999999999999999864
No 497
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.30 E-value=0.34 Score=54.22 Aligned_cols=87 Identities=16% Similarity=0.187 Sum_probs=51.9
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCC-CHHHHHHHHHHhccCC-------CCCCCCHHH-----
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDF-DVFRVTKSILMSISNV-------TVNDNDLNS----- 92 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~----- 92 (1165)
..++|.|.+|+|||+|+.++..... +.+-+.++++-++... .+.++.+++...-... ..+.....+
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~ 217 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGH 217 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHH
Confidence 4589999999999999999876422 2233567777776654 4455555554321111 011111111
Q ss_pred HHHHHHHHh---cCceEEEEEeCC
Q 038861 93 LQEKLEKEL---IKKKFLLVLDDM 113 (1165)
Q Consensus 93 ~~~~l~~~l---~~~~~LlvlDdv 113 (1165)
.+-.+.+++ +++.+|+++||+
T Consensus 218 ~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 218 TALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHhcCCceEEEecCh
Confidence 112344554 468999999999
No 498
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.28 E-value=0.36 Score=48.71 Aligned_cols=22 Identities=23% Similarity=0.191 Sum_probs=20.3
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+++|+|+.|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999873
No 499
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.28 E-value=0.53 Score=50.56 Aligned_cols=84 Identities=18% Similarity=0.263 Sum_probs=47.1
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEc-CCCCHHHHHHHHHHhccCC-------CCCCCCHHH-----
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVS-EDFDVFRVTKSILMSISNV-------TVNDNDLNS----- 92 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~-~~~~~~~~~~~i~~~l~~~-------~~~~~~~~~----- 92 (1165)
..++|.|..|+|||||++.+..... -+.++...++ +..++.++.......-... ..+.....+
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~ 145 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAY 145 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHH
Confidence 4689999999999999998886422 1233333333 3345555555554432211 111111111
Q ss_pred HHHHHHHHh--cCceEEEEEeCC
Q 038861 93 LQEKLEKEL--IKKKFLLVLDDM 113 (1165)
Q Consensus 93 ~~~~l~~~l--~~~~~LlvlDdv 113 (1165)
..-.+.+++ +++.+|+++||+
T Consensus 146 ~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 146 TATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHcCCCeEEEeccc
Confidence 111223333 578999999998
No 500
>PF13479 AAA_24: AAA domain
Probab=93.26 E-value=0.26 Score=50.16 Aligned_cols=20 Identities=50% Similarity=0.511 Sum_probs=17.6
Q ss_pred EEEEEEccCCchHHHHHHHH
Q 038861 26 SVISIIGMGGVGKTTLAQLV 45 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~ 45 (1165)
-.+.|+|.+|+||||+|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 35899999999999999666
Done!