Query 038861
Match_columns 1165
No_of_seqs 588 out of 4234
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 06:11:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038861.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038861hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.1E-50 7.2E-55 499.7 31.2 619 391-1164 54-740 (768)
2 3rgz_A Protein brassinosteroid 100.0 5.6E-49 1.9E-53 487.0 27.3 625 374-1142 71-742 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 6.4E-42 2.2E-46 421.6 38.2 571 391-1162 8-620 (680)
4 2a5y_B CED-4; apoptosis; HET: 100.0 2.7E-43 9.4E-48 414.8 23.1 316 1-339 131-473 (549)
5 1ziw_A TOLL-like receptor 3; i 100.0 2.5E-40 8.4E-45 407.5 35.7 554 391-1115 29-619 (680)
6 3t6q_A CD180 antigen; protein- 100.0 1.1E-39 3.6E-44 396.3 34.1 525 391-1141 16-561 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1E-39 3.5E-44 396.4 30.0 530 391-1093 15-558 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 2.5E-38 8.7E-43 384.2 31.3 523 412-1115 12-555 (606)
9 3t6q_A CD180 antigen; protein- 100.0 3E-38 1E-42 383.5 26.6 316 391-827 37-362 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 7.6E-37 2.6E-41 382.5 38.5 520 391-1115 8-557 (844)
11 3j0a_A TOLL-like receptor 5; m 100.0 5.4E-35 1.8E-39 365.8 35.7 321 391-802 28-372 (844)
12 1vt4_I APAF-1 related killer D 100.0 1E-36 3.5E-41 356.7 18.6 283 1-330 131-436 (1221)
13 2z63_A TOLL-like receptor 4, v 100.0 1.1E-34 3.9E-39 349.9 29.8 508 391-1097 11-535 (570)
14 2z63_A TOLL-like receptor 4, v 100.0 1.3E-34 4.5E-39 349.4 27.0 508 413-1116 9-529 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 8.4E-34 2.9E-38 340.2 29.7 192 962-1162 310-508 (549)
16 3sfz_A APAF-1, apoptotic pepti 100.0 6.4E-33 2.2E-37 368.1 26.9 305 1-337 127-452 (1249)
17 2z7x_B TOLL-like receptor 1, v 100.0 1E-32 3.4E-37 327.9 23.0 131 962-1096 348-484 (520)
18 4eco_A Uncharacterized protein 100.0 1.4E-33 4.7E-38 340.4 15.8 66 411-479 81-159 (636)
19 4g8a_A TOLL-like receptor 4; l 100.0 5.8E-32 2E-36 331.9 30.3 523 393-1094 37-581 (635)
20 4ecn_A Leucine-rich repeat pro 100.0 4.6E-32 1.6E-36 330.3 24.8 125 986-1115 729-861 (876)
21 2z7x_B TOLL-like receptor 1, v 100.0 4.4E-32 1.5E-36 322.3 22.5 81 391-475 4-85 (520)
22 2z81_A CD282 antigen, TOLL-lik 100.0 1E-31 3.4E-36 322.1 24.7 98 391-489 30-130 (549)
23 1z6t_A APAF-1, apoptotic prote 100.0 6.6E-32 2.3E-36 324.9 22.9 300 1-334 127-449 (591)
24 4eco_A Uncharacterized protein 100.0 1.5E-31 5.2E-36 322.6 20.5 286 569-1047 304-601 (636)
25 4ecn_A Leucine-rich repeat pro 100.0 2.7E-30 9.4E-35 314.7 24.8 377 756-1165 435-873 (876)
26 4g8a_A TOLL-like receptor 4; l 100.0 1.6E-29 5.5E-34 310.1 31.0 154 417-637 37-192 (635)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.9E-31 2.4E-35 314.2 16.7 91 391-487 35-126 (562)
28 1jl5_A Outer protein YOPM; leu 100.0 2E-29 6.8E-34 289.5 20.6 112 962-1094 297-410 (454)
29 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2E-28 6.7E-33 292.9 24.7 463 571-1144 32-514 (562)
30 1jl5_A Outer protein YOPM; leu 100.0 3.7E-28 1.3E-32 279.0 18.8 156 962-1146 277-435 (454)
31 3v47_A TOLL-like receptor 5B a 100.0 2.1E-27 7.3E-32 277.1 24.5 134 962-1095 275-410 (455)
32 3bz5_A Internalin-J, INLJ; leu 99.9 1.9E-26 6.5E-31 265.0 25.0 62 404-469 35-96 (457)
33 3v47_A TOLL-like receptor 5B a 99.9 2.5E-26 8.5E-31 268.0 24.1 366 678-1117 30-407 (455)
34 1o6v_A Internalin A; bacterial 99.9 1.3E-25 4.5E-30 261.3 28.6 165 962-1137 221-385 (466)
35 1o6v_A Internalin A; bacterial 99.9 6.9E-25 2.3E-29 255.3 27.7 125 962-1094 265-389 (466)
36 4fmz_A Internalin; leucine ric 99.9 3.2E-24 1.1E-28 239.9 24.0 268 757-1116 55-322 (347)
37 3bz5_A Internalin-J, INLJ; leu 99.9 2.1E-24 7.2E-29 248.0 20.6 369 565-1111 37-405 (457)
38 2id5_A Lingo-1, leucine rich r 99.9 3.1E-23 1.1E-27 242.9 26.2 175 963-1138 153-331 (477)
39 4fmz_A Internalin; leucine ric 99.9 1.4E-23 4.7E-28 234.8 21.3 264 761-1117 81-345 (347)
40 2id5_A Lingo-1, leucine rich r 99.9 6.5E-23 2.2E-27 240.2 26.1 298 677-1070 31-333 (477)
41 3o6n_A APL1; leucine-rich repe 99.9 4.2E-23 1.4E-27 234.5 20.2 306 720-1094 44-353 (390)
42 3o6n_A APL1; leucine-rich repe 99.9 1.2E-22 3.9E-27 231.0 23.0 303 745-1139 44-351 (390)
43 3oja_B Anopheles plasmodium-re 99.9 3.8E-23 1.3E-27 248.2 19.4 317 720-1105 50-370 (597)
44 3oja_B Anopheles plasmodium-re 99.9 2.8E-22 9.4E-27 240.6 23.1 303 745-1139 50-357 (597)
45 2ft3_A Biglycan; proteoglycan, 99.9 9.7E-22 3.3E-26 217.6 21.3 196 962-1163 123-332 (332)
46 1xku_A Decorin; proteoglycan, 99.9 7.1E-21 2.4E-25 210.6 25.1 196 962-1162 121-330 (330)
47 1xku_A Decorin; proteoglycan, 99.9 4.2E-21 1.5E-25 212.4 23.0 150 963-1115 172-329 (330)
48 1ogq_A PGIP-2, polygalacturona 99.9 2.3E-22 7.7E-27 219.7 10.5 247 769-1091 51-302 (313)
49 1ogq_A PGIP-2, polygalacturona 99.9 2.4E-22 8.1E-27 219.5 10.1 227 871-1142 75-306 (313)
50 2ft3_A Biglycan; proteoglycan, 99.9 8E-21 2.7E-25 210.3 19.7 149 964-1115 174-330 (332)
51 4fcg_A Uncharacterized protein 99.8 1.9E-20 6.7E-25 205.4 15.8 215 391-701 85-299 (328)
52 4fcg_A Uncharacterized protein 99.8 5.5E-20 1.9E-24 201.8 19.1 130 985-1117 183-313 (328)
53 1ozn_A Reticulon 4 receptor; N 99.8 5.8E-19 2E-23 190.6 19.8 204 958-1162 28-236 (285)
54 1z7x_W Ribonuclease inhibitor; 99.8 1.2E-21 4E-26 229.0 -1.9 201 962-1162 170-409 (461)
55 3g06_A SSPH2 (leucine-rich rep 99.8 3.3E-18 1.1E-22 201.8 25.7 265 769-1149 41-306 (622)
56 2z66_A Variable lymphocyte rec 99.8 4.4E-19 1.5E-23 193.9 16.6 131 963-1093 127-261 (306)
57 1z7x_W Ribonuclease inhibitor; 99.8 8E-22 2.7E-26 230.4 -6.3 194 962-1156 227-460 (461)
58 3ogk_B Coronatine-insensitive 99.8 4.7E-20 1.6E-24 223.1 6.6 177 962-1138 318-524 (592)
59 1ozn_A Reticulon 4 receptor; N 99.8 6.3E-19 2.1E-23 190.3 14.0 200 962-1162 80-285 (285)
60 2z66_A Variable lymphocyte rec 99.8 2.1E-18 7.3E-23 188.5 17.6 176 962-1139 78-260 (306)
61 2z62_A TOLL-like receptor 4, v 99.8 1.2E-18 4E-23 187.2 15.2 214 947-1162 13-235 (276)
62 3zyj_A Leucine-rich repeat-con 99.8 3.2E-18 1.1E-22 197.4 20.0 222 938-1162 64-290 (440)
63 3zyi_A Leucine-rich repeat-con 99.8 3E-18 1E-22 198.3 19.6 223 937-1162 74-301 (452)
64 3o53_A Protein LRIM1, AGAP0063 99.8 3.2E-19 1.1E-23 195.4 10.5 171 985-1161 99-272 (317)
65 3g06_A SSPH2 (leucine-rich rep 99.8 1.7E-17 5.9E-22 195.7 25.4 54 768-828 61-114 (622)
66 2z80_A TOLL-like receptor 2, v 99.8 2.1E-18 7.1E-23 192.7 16.4 158 985-1143 149-317 (353)
67 3ogk_B Coronatine-insensitive 99.8 3.1E-20 1.1E-24 224.7 1.7 363 677-1120 111-528 (592)
68 3zyi_A Leucine-rich repeat-con 99.8 4.5E-18 1.6E-22 196.8 19.7 226 768-1069 75-302 (452)
69 3o53_A Protein LRIM1, AGAP0063 99.8 2.3E-19 8E-24 196.5 8.0 237 766-1114 32-271 (317)
70 1wwl_A Monocyte differentiatio 99.8 6.1E-20 2.1E-24 200.6 2.9 197 962-1162 95-307 (312)
71 3zyj_A Leucine-rich repeat-con 99.8 6.2E-18 2.1E-22 194.9 19.7 226 768-1069 64-291 (440)
72 2z80_A TOLL-like receptor 2, v 99.8 5.1E-18 1.7E-22 189.5 17.0 253 768-1096 52-317 (353)
73 3oja_A Leucine-rich immune mol 99.8 3E-18 1E-22 198.8 13.8 169 985-1159 99-270 (487)
74 3oja_A Leucine-rich immune mol 99.7 1.8E-18 6.2E-23 200.6 11.4 236 766-1113 32-270 (487)
75 1wwl_A Monocyte differentiatio 99.7 1.9E-18 6.7E-23 188.7 9.4 251 815-1115 43-306 (312)
76 2o6q_A Variable lymphocyte rec 99.7 3.4E-17 1.2E-21 174.7 18.6 183 956-1139 31-217 (270)
77 2xwt_C Thyrotropin receptor; s 99.7 1.1E-17 3.8E-22 175.0 14.4 197 960-1164 29-239 (239)
78 2p1m_B Transport inhibitor res 99.7 7.7E-20 2.6E-24 221.4 -5.5 153 962-1115 372-541 (594)
79 2o6q_A Variable lymphocyte rec 99.7 8.9E-17 3.1E-21 171.4 18.8 196 963-1162 17-216 (270)
80 2p1m_B Transport inhibitor res 99.7 1.3E-18 4.4E-23 210.6 1.3 136 766-905 103-245 (594)
81 1p9a_G Platelet glycoprotein I 99.7 1.6E-16 5.6E-21 170.6 16.4 178 958-1139 27-207 (290)
82 3rfs_A Internalin B, repeat mo 99.7 6.5E-17 2.2E-21 172.6 12.5 181 964-1151 65-246 (272)
83 4glp_A Monocyte differentiatio 99.7 5.9E-17 2E-21 176.9 11.3 197 962-1163 91-306 (310)
84 2xwt_C Thyrotropin receptor; s 99.7 2.4E-16 8.2E-21 164.8 15.4 173 962-1139 55-238 (239)
85 1p9a_G Platelet glycoprotein I 99.7 7.3E-16 2.5E-20 165.4 18.0 108 985-1093 100-208 (290)
86 2z62_A TOLL-like receptor 4, v 99.7 2.7E-16 9.1E-21 168.7 14.3 201 872-1116 28-235 (276)
87 2qen_A Walker-type ATPase; unk 99.7 1.7E-15 5.8E-20 169.5 19.8 286 1-331 15-349 (350)
88 3m19_A Variable lymphocyte rec 99.7 7.3E-16 2.5E-20 162.3 15.8 159 958-1117 31-191 (251)
89 3rfs_A Internalin B, repeat mo 99.7 4.8E-16 1.6E-20 165.9 14.4 175 962-1140 41-218 (272)
90 3m19_A Variable lymphocyte rec 99.6 1.4E-15 4.7E-20 160.2 16.5 176 963-1141 15-193 (251)
91 1h6u_A Internalin H; cell adhe 99.6 1.1E-15 3.8E-20 166.0 14.1 188 962-1162 41-228 (308)
92 4glp_A Monocyte differentiatio 99.6 5.4E-16 1.8E-20 169.2 11.4 173 962-1139 117-306 (310)
93 1w5s_A Origin recognition comp 99.6 3.6E-15 1.2E-19 170.9 16.1 309 1-326 25-387 (412)
94 1h6u_A Internalin H; cell adhe 99.6 5.2E-15 1.8E-19 160.7 14.5 144 963-1117 86-229 (308)
95 4ay9_X Follicle-stimulating ho 99.6 1.7E-14 5.7E-19 160.2 18.3 196 962-1160 54-255 (350)
96 2fna_A Conserved hypothetical 99.6 2E-14 6.8E-19 161.3 18.7 286 1-330 16-356 (357)
97 2ast_B S-phase kinase-associat 99.6 4.2E-16 1.4E-20 173.1 4.4 247 770-1098 49-311 (336)
98 3cvr_A Invasion plasmid antige 99.6 1.1E-14 3.9E-19 169.3 16.3 175 963-1162 60-241 (571)
99 4ay9_X Follicle-stimulating ho 99.6 1.8E-14 6.1E-19 160.0 14.5 95 391-489 13-111 (350)
100 2ca6_A RAN GTPase-activating p 99.6 7.3E-16 2.5E-20 174.4 3.2 133 962-1094 159-317 (386)
101 2o6s_A Variable lymphocyte rec 99.6 7.7E-15 2.6E-19 149.5 10.4 161 985-1151 28-189 (208)
102 4ezg_A Putative uncharacterize 99.5 2E-14 6.8E-19 144.7 12.8 150 962-1117 44-193 (197)
103 2v9t_B SLIT homolog 2 protein 99.5 2.9E-14 9.9E-19 146.0 13.7 130 985-1115 32-162 (220)
104 2ca6_A RAN GTPase-activating p 99.5 1.3E-15 4.3E-20 172.4 2.6 158 962-1119 94-288 (386)
105 3goz_A Leucine-rich repeat-con 99.5 1.1E-15 3.9E-20 170.7 2.1 130 962-1091 109-264 (362)
106 2v70_A SLIT-2, SLIT homolog 2 99.5 4E-14 1.4E-18 144.9 12.9 149 965-1116 14-164 (220)
107 2ast_B S-phase kinase-associat 99.5 1.2E-15 4E-20 169.5 0.8 175 962-1137 93-282 (336)
108 3e6j_A Variable lymphocyte rec 99.5 7E-14 2.4E-18 144.3 13.5 129 985-1115 40-169 (229)
109 1h6t_A Internalin B; cell adhe 99.5 5.1E-14 1.8E-18 151.3 12.7 166 962-1138 46-211 (291)
110 2v9t_B SLIT homolog 2 protein 99.5 7E-14 2.4E-18 143.1 13.1 137 958-1094 28-166 (220)
111 1h6t_A Internalin B; cell adhe 99.5 7.2E-14 2.5E-18 150.1 12.8 168 938-1118 46-213 (291)
112 2o6s_A Variable lymphocyte rec 99.5 5E-14 1.7E-18 143.5 11.0 152 958-1117 24-177 (208)
113 2xot_A Amphoterin-induced prot 99.5 5.1E-14 1.7E-18 156.9 11.5 156 958-1115 35-199 (361)
114 2xot_A Amphoterin-induced prot 99.5 1.6E-13 5.5E-18 152.9 14.5 174 964-1140 20-202 (361)
115 4ezg_A Putative uncharacterize 99.5 1.2E-13 4.2E-18 138.9 11.6 147 985-1138 44-192 (197)
116 2v70_A SLIT-2, SLIT homolog 2 99.5 1.2E-13 4.1E-18 141.4 11.6 139 958-1096 28-169 (220)
117 3e6j_A Variable lymphocyte rec 99.5 2.5E-13 8.6E-18 140.1 13.3 148 947-1095 25-174 (229)
118 1m9s_A Internalin B; cell inva 99.4 2.1E-13 7E-18 160.9 10.6 143 962-1115 65-207 (605)
119 2qby_B CDC6 homolog 3, cell di 99.4 4.3E-12 1.5E-16 143.5 20.9 289 1-313 23-339 (384)
120 1m9s_A Internalin B; cell inva 99.4 4.5E-13 1.5E-17 158.0 13.2 167 962-1139 43-209 (605)
121 1xeu_A Internalin C; cellular 99.4 2.2E-13 7.5E-18 143.7 8.8 164 963-1138 20-183 (263)
122 3cvr_A Invasion plasmid antige 99.4 1.6E-12 5.6E-17 151.1 15.8 169 960-1151 78-254 (571)
123 2v1u_A Cell division control p 99.4 7.2E-12 2.5E-16 142.1 20.5 288 1-312 22-350 (387)
124 2ell_A Acidic leucine-rich nuc 99.4 5.8E-13 2E-17 130.2 9.1 134 985-1120 24-162 (168)
125 3goz_A Leucine-rich repeat-con 99.4 5.9E-14 2E-18 156.8 0.3 205 958-1162 18-264 (362)
126 1w8a_A SLIT protein; signaling 99.4 2E-12 6.8E-17 129.1 11.0 130 965-1096 11-142 (192)
127 1fnn_A CDC6P, cell division co 99.3 1.8E-11 6.3E-16 138.7 19.3 293 1-313 20-351 (389)
128 1xeu_A Internalin C; cellular 99.3 4.1E-12 1.4E-16 134.0 12.6 145 962-1118 41-185 (263)
129 2je0_A Acidic leucine-rich nuc 99.3 5.8E-13 2E-17 127.2 5.4 127 985-1113 17-148 (149)
130 1w8a_A SLIT protein; signaling 99.3 4.4E-12 1.5E-16 126.6 11.3 126 988-1117 11-138 (192)
131 2ell_A Acidic leucine-rich nuc 99.3 1.5E-12 5.2E-17 127.2 7.6 135 957-1094 19-161 (168)
132 2qby_A CDC6 homolog 1, cell di 99.3 1.3E-11 4.3E-16 140.1 15.7 301 1-323 23-361 (386)
133 2je0_A Acidic leucine-rich nuc 99.3 3.3E-12 1.1E-16 121.9 6.5 128 1008-1160 16-149 (149)
134 2wfh_A SLIT homolog 2 protein 99.3 1.6E-11 5.4E-16 122.4 11.2 127 965-1094 13-140 (193)
135 1dce_A Protein (RAB geranylger 99.3 4.3E-14 1.5E-18 165.8 -9.4 37 765-802 346-382 (567)
136 1dce_A Protein (RAB geranylger 99.2 4.1E-14 1.4E-18 166.0 -9.9 103 987-1094 443-547 (567)
137 2o6r_A Variable lymphocyte rec 99.2 3.3E-11 1.1E-15 118.8 12.2 130 964-1095 9-139 (177)
138 4b8c_D Glucose-repressible alc 99.2 1.1E-12 3.6E-17 159.4 1.4 107 985-1095 224-331 (727)
139 1njg_A DNA polymerase III subu 99.2 7.8E-11 2.7E-15 124.3 14.3 194 1-211 26-231 (250)
140 2wfh_A SLIT homolog 2 protein 99.2 4.7E-11 1.6E-15 118.9 11.7 112 958-1070 27-139 (193)
141 2o6r_A Variable lymphocyte rec 99.2 6.9E-11 2.4E-15 116.4 11.3 117 958-1074 24-141 (177)
142 1a9n_A U2A', U2A'; complex (nu 99.2 1.5E-11 5E-16 121.0 5.3 126 985-1115 19-150 (176)
143 4b8c_D Glucose-repressible alc 99.2 4.9E-12 1.7E-16 153.6 1.7 144 962-1115 224-369 (727)
144 3sb4_A Hypothetical leucine ri 99.1 1.9E-10 6.6E-15 126.2 12.9 100 1008-1111 225-327 (329)
145 2chg_A Replication factor C sm 99.1 4.4E-10 1.5E-14 116.3 14.4 183 1-209 20-205 (226)
146 1a9n_A U2A', U2A'; complex (nu 99.1 3.1E-11 1.1E-15 118.6 5.2 129 961-1094 18-154 (176)
147 3sb4_A Hypothetical leucine ri 99.1 7.8E-10 2.7E-14 121.4 14.5 99 985-1086 226-327 (329)
148 3g39_A Variable lymphocyte rec 99.1 3.3E-10 1.1E-14 110.1 9.7 85 1009-1093 30-115 (170)
149 3g39_A Variable lymphocyte rec 99.0 6.1E-10 2.1E-14 108.2 10.8 106 964-1071 11-116 (170)
150 2r9u_A Variable lymphocyte rec 99.0 5.2E-10 1.8E-14 109.0 9.8 85 1009-1093 33-118 (174)
151 1ds9_A Outer arm dynein; leuci 99.0 3.5E-12 1.2E-16 128.3 -5.9 127 985-1115 18-150 (198)
152 2r9u_A Variable lymphocyte rec 99.0 8.8E-10 3E-14 107.4 11.0 105 964-1070 14-118 (174)
153 1hqc_A RUVB; extended AAA-ATPa 98.9 1.3E-09 4.3E-14 119.7 9.4 179 1-211 15-214 (324)
154 1sxj_B Activator 1 37 kDa subu 98.9 3.7E-09 1.3E-13 116.1 10.9 177 1-209 24-211 (323)
155 1ds9_A Outer arm dynein; leuci 98.9 5.9E-12 2E-16 126.6 -11.1 144 963-1111 24-180 (198)
156 4fdw_A Leucine rich hypothetic 98.9 9.2E-08 3.1E-12 106.8 20.7 105 1027-1136 265-379 (401)
157 4fdw_A Leucine rich hypothetic 98.8 2.3E-07 7.9E-12 103.6 22.1 147 963-1116 227-381 (401)
158 3te6_A Regulatory protein SIR3 98.8 2.6E-08 8.9E-13 105.1 13.0 168 2-174 24-211 (318)
159 1iqp_A RFCS; clamp loader, ext 98.7 3.3E-08 1.1E-12 108.6 10.6 183 1-211 28-215 (327)
160 2ifg_A High affinity nerve gro 98.7 3.7E-08 1.3E-12 109.1 9.9 101 967-1069 13-115 (347)
161 1jr3_A DNA polymerase III subu 98.6 1.2E-07 4.2E-12 106.2 13.2 192 1-208 19-221 (373)
162 2ifg_A High affinity nerve gro 98.6 4.3E-08 1.5E-12 108.6 8.7 102 990-1093 13-116 (347)
163 4fs7_A Uncharacterized protein 98.6 1.3E-06 4.3E-11 98.4 19.6 121 985-1114 253-375 (394)
164 2chq_A Replication factor C sm 98.6 1.4E-07 4.9E-12 103.1 11.6 178 1-207 20-203 (319)
165 3un9_A NLR family member X1; l 98.6 2.9E-09 1E-13 117.7 -3.0 159 961-1119 71-253 (372)
166 3un9_A NLR family member X1; l 98.5 3.5E-09 1.2E-13 117.1 -5.0 155 985-1139 72-251 (372)
167 4fs7_A Uncharacterized protein 98.4 7.3E-06 2.5E-10 92.1 20.6 101 1003-1110 291-393 (394)
168 1jbk_A CLPB protein; beta barr 98.4 3.9E-07 1.3E-11 91.2 9.0 42 1-48 25-66 (195)
169 3pfi_A Holliday junction ATP-d 98.4 2.1E-06 7.3E-11 94.3 14.8 175 1-208 32-227 (338)
170 1sxj_D Activator 1 41 kDa subu 98.4 7.8E-07 2.7E-11 98.7 10.5 192 1-207 40-234 (353)
171 3bos_A Putative DNA replicatio 98.4 3.3E-07 1.1E-11 95.6 6.4 168 5-209 38-218 (242)
172 3h4m_A Proteasome-activating n 98.2 7.2E-06 2.5E-10 87.5 13.5 182 1-207 20-230 (285)
173 1a5t_A Delta prime, HOLB; zinc 98.2 1.7E-05 5.8E-10 86.3 16.4 171 4-207 8-204 (334)
174 3uk6_A RUVB-like 2; hexameric 98.2 8.3E-06 2.8E-10 90.9 14.4 192 1-207 47-302 (368)
175 1sxj_E Activator 1 40 kDa subu 98.2 3.4E-06 1.2E-10 93.4 11.1 103 103-208 133-237 (354)
176 1sxj_A Activator 1 95 kDa subu 98.2 3.5E-06 1.2E-10 97.7 11.2 192 1-208 42-253 (516)
177 3pvs_A Replication-associated 98.2 1.2E-05 4.2E-10 90.3 15.1 174 1-207 29-214 (447)
178 2ra8_A Uncharacterized protein 98.2 1.1E-06 3.8E-11 96.0 6.1 135 1001-1138 164-318 (362)
179 2z4s_A Chromosomal replication 98.2 4.4E-06 1.5E-10 94.3 11.1 161 25-206 130-304 (440)
180 4gt6_A Cell surface protein; l 98.2 7.3E-05 2.5E-09 83.9 20.9 107 1003-1115 259-367 (394)
181 2qz4_A Paraplegin; AAA+, SPG7, 98.2 1.2E-05 4E-10 84.7 13.1 185 1-208 9-222 (262)
182 1d2n_A N-ethylmaleimide-sensit 98.1 1E-05 3.5E-10 85.4 12.0 169 1-200 36-229 (272)
183 2ra8_A Uncharacterized protein 98.1 1.9E-06 6.4E-11 94.1 5.5 151 985-1138 172-341 (362)
184 3syl_A Protein CBBX; photosynt 98.1 9.8E-06 3.4E-10 87.7 11.1 159 1-175 34-218 (309)
185 3eie_A Vacuolar protein sortin 98.1 2.8E-05 9.5E-10 84.2 14.2 182 1-210 21-230 (322)
186 1xwi_A SKD1 protein; VPS4B, AA 98.1 7.1E-05 2.4E-09 80.6 17.1 187 1-210 15-225 (322)
187 4gt6_A Cell surface protein; l 98.1 0.00011 3.9E-09 82.3 19.5 123 1027-1158 259-385 (394)
188 3u61_B DNA polymerase accessor 98.1 2.1E-05 7.3E-10 85.6 12.7 170 1-205 29-213 (324)
189 2qp9_X Vacuolar protein sortin 98.0 7.7E-05 2.6E-09 81.6 16.5 183 1-209 54-262 (355)
190 3e4g_A ATP synthase subunit S, 98.0 1.2E-05 4E-10 76.1 7.1 85 1080-1165 61-153 (176)
191 3n70_A Transport activator; si 98.0 8E-06 2.7E-10 76.4 6.0 112 1-143 4-115 (145)
192 1l8q_A Chromosomal replication 97.9 5.2E-05 1.8E-09 82.4 13.1 155 25-203 37-203 (324)
193 1sxj_C Activator 1 40 kDa subu 97.9 2.7E-05 9.3E-10 85.2 10.9 173 1-205 28-209 (340)
194 3d8b_A Fidgetin-like protein 1 97.9 5E-05 1.7E-09 83.4 12.8 185 1-210 87-297 (357)
195 4h09_A Hypothetical leucine ri 97.9 0.00048 1.6E-08 76.8 20.9 124 985-1114 217-342 (379)
196 2p65_A Hypothetical protein PF 97.9 8.9E-06 3.1E-10 80.5 6.0 42 1-48 25-66 (187)
197 2zan_A Vacuolar protein sortin 97.9 0.00014 4.8E-09 82.2 15.6 186 1-209 137-346 (444)
198 3b9p_A CG5977-PA, isoform A; A 97.9 0.00021 7.3E-09 76.5 16.1 182 1-209 24-234 (297)
199 3ec2_A DNA replication protein 97.8 1.3E-05 4.6E-10 78.4 5.6 121 4-144 20-143 (180)
200 3pxg_A Negative regulator of g 97.8 5.5E-05 1.9E-09 86.2 11.4 142 1-174 183-338 (468)
201 3vfd_A Spastin; ATPase, microt 97.8 0.00027 9.3E-09 78.7 15.9 185 1-209 118-327 (389)
202 3cf0_A Transitional endoplasmi 97.8 0.00037 1.3E-08 74.4 15.6 178 1-203 18-223 (301)
203 2gno_A DNA polymerase III, gam 97.7 7.7E-05 2.6E-09 79.1 9.3 149 2-174 1-152 (305)
204 3co5_A Putative two-component 97.7 1.7E-05 5.7E-10 73.9 3.5 44 1-48 7-50 (143)
205 1qvr_A CLPB protein; coiled co 97.7 4.1E-05 1.4E-09 94.7 7.7 151 1-173 173-344 (854)
206 1in4_A RUVB, holliday junction 97.7 0.00066 2.3E-08 73.6 16.3 173 1-206 28-221 (334)
207 2w58_A DNAI, primosome compone 97.7 5E-05 1.7E-09 76.0 6.9 118 6-143 37-158 (202)
208 3e4g_A ATP synthase subunit S, 97.7 1.3E-05 4.6E-10 75.7 2.2 16 1005-1020 81-96 (176)
209 4b4t_J 26S protease regulatory 97.6 0.00047 1.6E-08 74.5 13.6 175 2-201 152-354 (405)
210 1ofh_A ATP-dependent HSL prote 97.6 0.00034 1.2E-08 75.6 12.9 47 1-47 18-72 (310)
211 4fcw_A Chaperone protein CLPB; 97.6 0.00024 8.2E-09 76.8 10.7 47 1-47 20-69 (311)
212 3hu3_A Transitional endoplasmi 97.5 0.00037 1.3E-08 79.1 12.4 182 1-207 207-414 (489)
213 3pxi_A Negative regulator of g 97.5 0.00018 6.3E-09 87.9 10.2 145 1-174 183-338 (758)
214 4h09_A Hypothetical leucine ri 97.5 0.0081 2.8E-07 66.8 22.6 83 1003-1088 257-341 (379)
215 3rw6_A Nuclear RNA export fact 97.5 3.5E-05 1.2E-09 79.2 2.6 65 1006-1072 167-235 (267)
216 4b4t_L 26S protease subunit RP 97.4 0.0015 5.1E-08 72.0 14.9 175 2-201 185-387 (437)
217 2c9o_A RUVB-like 1; hexameric 97.4 0.00037 1.3E-08 79.3 10.5 97 106-206 297-408 (456)
218 1lv7_A FTSH; alpha/beta domain 97.4 0.0012 4E-08 68.8 13.5 181 1-206 15-223 (257)
219 1r6b_X CLPA protein; AAA+, N-t 97.4 0.00084 2.9E-08 82.3 14.3 153 1-173 189-361 (758)
220 1io0_A Tropomodulin; LRR prote 97.4 1.7E-05 5.7E-10 77.8 -0.7 90 1004-1093 60-164 (185)
221 2kjq_A DNAA-related protein; s 97.4 9E-05 3.1E-09 69.1 4.3 23 26-48 37-59 (149)
222 4b4t_H 26S protease regulatory 97.4 0.00083 2.8E-08 73.6 12.4 175 2-201 213-415 (467)
223 1io0_A Tropomodulin; LRR prote 97.4 1.5E-05 5.1E-10 78.1 -1.2 114 1003-1116 30-162 (185)
224 2bjv_A PSP operon transcriptio 97.4 0.0002 6.7E-09 75.2 6.7 44 1-48 9-52 (265)
225 1ojl_A Transcriptional regulat 97.4 0.00037 1.3E-08 74.2 8.7 43 1-47 5-47 (304)
226 3rw6_A Nuclear RNA export fact 97.4 5.4E-05 1.8E-09 77.8 2.1 78 985-1063 170-257 (267)
227 2r62_A Cell division protease 97.3 7.1E-05 2.4E-09 78.8 2.9 177 1-202 14-219 (268)
228 4b4t_I 26S protease regulatory 97.2 0.0016 5.3E-08 70.7 11.5 174 2-200 186-387 (437)
229 4b4t_K 26S protease regulatory 97.2 0.0046 1.6E-07 68.1 15.1 174 2-200 176-378 (428)
230 4b4t_M 26S protease regulatory 97.2 0.00036 1.2E-08 76.8 6.4 174 2-200 185-386 (434)
231 2ce7_A Cell division protein F 97.2 0.0025 8.6E-08 71.5 13.2 176 1-201 19-221 (476)
232 3pxi_A Negative regulator of g 97.1 0.00042 1.4E-08 84.7 7.2 152 1-173 494-674 (758)
233 3t15_A Ribulose bisphosphate c 97.0 0.0025 8.6E-08 67.4 10.8 26 23-48 34-59 (293)
234 3cf2_A TER ATPase, transitiona 97.0 0.0024 8.3E-08 76.0 11.3 175 2-201 208-407 (806)
235 2r44_A Uncharacterized protein 96.9 0.0015 5.2E-08 71.0 8.2 147 1-174 30-198 (331)
236 2qgz_A Helicase loader, putati 96.9 0.00076 2.6E-08 71.8 5.3 54 5-63 135-189 (308)
237 2vhj_A Ntpase P4, P4; non- hyd 96.9 0.00056 1.9E-08 71.1 4.0 69 25-115 123-193 (331)
238 3m6a_A ATP-dependent protease 96.8 0.0021 7E-08 74.5 8.5 24 24-47 107-130 (543)
239 1qvr_A CLPB protein; coiled co 96.7 0.003 1E-07 78.1 9.9 47 1-47 561-610 (854)
240 1r6b_X CLPA protein; AAA+, N-t 96.6 0.0019 6.6E-08 79.1 7.2 47 1-47 461-510 (758)
241 2cvh_A DNA repair and recombin 96.6 0.0077 2.6E-07 60.8 9.9 85 25-115 20-116 (220)
242 1g5t_A COB(I)alamin adenosyltr 96.5 0.0019 6.3E-08 62.0 4.5 117 26-144 29-163 (196)
243 1jr3_D DNA polymerase III, del 96.4 0.02 6.8E-07 62.4 12.8 157 25-207 18-184 (343)
244 2b8t_A Thymidine kinase; deoxy 96.4 0.0015 5.3E-08 64.9 3.3 113 25-145 12-127 (223)
245 3hr8_A Protein RECA; alpha and 96.3 0.01 3.4E-07 63.7 9.2 84 24-114 60-149 (356)
246 2x8a_A Nuclear valosin-contain 96.3 0.012 4.1E-07 61.3 9.5 126 28-174 47-191 (274)
247 3io5_A Recombination and repai 96.2 0.01 3.5E-07 61.3 8.5 81 27-114 30-121 (333)
248 1um8_A ATP-dependent CLP prote 96.2 0.016 5.5E-07 64.0 10.9 22 26-47 73-94 (376)
249 1ypw_A Transitional endoplasmi 96.1 0.014 4.6E-07 71.2 10.4 154 1-174 207-385 (806)
250 2dhr_A FTSH; AAA+ protein, hex 96.1 0.094 3.2E-06 59.2 16.1 146 27-201 66-236 (499)
251 1iy2_A ATP-dependent metallopr 96.0 0.015 5.2E-07 61.0 8.6 149 28-201 76-245 (278)
252 1ixz_A ATP-dependent metallopr 96.0 0.0097 3.3E-07 61.6 7.0 149 28-201 52-221 (254)
253 1rz3_A Hypothetical protein rb 95.9 0.0082 2.8E-07 59.4 5.9 43 2-47 2-44 (201)
254 2z43_A DNA repair and recombin 95.7 0.027 9.2E-07 60.5 9.3 88 25-113 107-212 (324)
255 1v5w_A DMC1, meiotic recombina 95.7 0.042 1.4E-06 59.3 10.7 51 24-74 121-175 (343)
256 2zr9_A Protein RECA, recombina 95.6 0.026 8.8E-07 60.9 8.9 84 24-114 60-149 (349)
257 1u94_A RECA protein, recombina 95.6 0.029 9.8E-07 60.5 8.8 83 24-113 62-150 (356)
258 1xp8_A RECA protein, recombina 95.6 0.034 1.2E-06 60.2 9.3 83 25-114 74-162 (366)
259 2w0m_A SSO2452; RECA, SSPF, un 95.5 0.023 8E-07 57.9 7.6 115 25-144 23-168 (235)
260 1n0w_A DNA repair protein RAD5 95.5 0.022 7.4E-07 58.5 7.3 88 25-113 24-128 (243)
261 2px0_A Flagellar biosynthesis 95.5 0.025 8.5E-07 59.4 7.7 87 24-113 104-191 (296)
262 2i1q_A DNA repair and recombin 95.2 0.034 1.2E-06 59.8 8.0 89 24-113 97-213 (322)
263 3cf2_A TER ATPase, transitiona 95.1 0.035 1.2E-06 66.2 8.3 131 24-174 510-661 (806)
264 3rfe_A Platelet glycoprotein I 95.1 0.029 9.9E-07 50.4 5.9 55 1013-1069 12-67 (130)
265 3nbx_X ATPase RAVA; AAA+ ATPas 95.0 0.014 4.8E-07 66.1 4.3 40 1-48 25-64 (500)
266 3ice_A Transcription terminati 95.0 0.023 7.7E-07 60.4 5.4 22 26-47 175-196 (422)
267 1vma_A Cell division protein F 94.9 0.1 3.5E-06 54.8 10.4 89 23-114 102-196 (306)
268 3dm5_A SRP54, signal recogniti 94.9 0.19 6.6E-06 55.3 12.8 24 24-47 99-122 (443)
269 1gvn_B Zeta; postsegregational 94.8 0.027 9.2E-07 59.0 5.7 40 7-47 16-55 (287)
270 3c8u_A Fructokinase; YP_612366 94.8 0.021 7.1E-07 56.9 4.5 39 5-47 6-44 (208)
271 3tqc_A Pantothenate kinase; bi 94.8 0.063 2.1E-06 56.7 8.4 40 6-47 75-114 (321)
272 1odf_A YGR205W, hypothetical 3 94.8 0.021 7.3E-07 59.7 4.7 25 23-47 29-53 (290)
273 1qhx_A CPT, protein (chloramph 94.5 0.016 5.6E-07 56.0 3.0 22 26-47 4-25 (178)
274 3rfe_A Platelet glycoprotein I 94.4 0.035 1.2E-06 49.9 4.7 52 391-445 12-66 (130)
275 2orw_A Thymidine kinase; TMTK, 94.4 0.0041 1.4E-07 60.2 -1.6 22 26-47 4-25 (184)
276 1zp6_A Hypothetical protein AT 94.3 0.024 8.2E-07 55.5 3.7 24 25-48 9-32 (191)
277 1ly1_A Polynucleotide kinase; 94.2 0.024 8.3E-07 54.9 3.4 22 26-47 3-24 (181)
278 3kb2_A SPBC2 prophage-derived 94.2 0.021 7.1E-07 54.9 2.9 22 26-47 2-23 (173)
279 3lw7_A Adenylate kinase relate 94.2 0.022 7.6E-07 55.0 3.0 20 26-45 2-21 (179)
280 2p5t_B PEZT; postsegregational 94.1 0.042 1.4E-06 56.6 5.1 39 8-47 16-54 (253)
281 1pzn_A RAD51, DNA repair and r 94.1 0.083 2.8E-06 57.0 7.7 90 24-114 130-241 (349)
282 3vaa_A Shikimate kinase, SK; s 94.1 0.024 8.3E-07 55.9 3.1 23 25-47 25-47 (199)
283 3hws_A ATP-dependent CLP prote 94.1 0.04 1.4E-06 60.5 5.2 47 1-47 18-73 (363)
284 3lda_A DNA repair protein RAD5 94.0 0.11 3.9E-06 56.8 8.6 56 25-81 178-237 (400)
285 3bh0_A DNAB-like replicative h 94.0 0.16 5.6E-06 54.0 9.6 51 25-79 68-118 (315)
286 1sky_E F1-ATPase, F1-ATP synth 94.0 0.074 2.5E-06 58.7 6.9 50 27-77 153-203 (473)
287 3uie_A Adenylyl-sulfate kinase 93.9 0.033 1.1E-06 55.0 3.8 23 25-47 25-47 (200)
288 2xxa_A Signal recognition part 93.9 0.23 7.9E-06 55.1 10.9 41 23-65 98-139 (433)
289 1kgd_A CASK, peripheral plasma 93.9 0.03 1E-06 54.1 3.3 22 26-47 6-27 (180)
290 3kl4_A SRP54, signal recogniti 93.8 0.38 1.3E-05 52.9 12.1 25 23-47 95-119 (433)
291 2rhm_A Putative kinase; P-loop 93.8 0.039 1.3E-06 54.1 4.0 24 24-47 4-27 (193)
292 1kag_A SKI, shikimate kinase I 93.7 0.024 8.3E-07 54.4 2.3 22 26-47 5-26 (173)
293 3trf_A Shikimate kinase, SK; a 93.7 0.031 1E-06 54.4 3.0 22 26-47 6-27 (185)
294 4a1f_A DNAB helicase, replicat 93.7 0.16 5.4E-06 54.0 8.6 52 25-80 46-97 (338)
295 1j8m_F SRP54, signal recogniti 93.6 0.29 9.9E-06 51.3 10.4 88 25-114 98-190 (297)
296 3e70_C DPA, signal recognition 93.6 0.35 1.2E-05 51.4 11.2 25 23-47 127-151 (328)
297 3upu_A ATP-dependent DNA helic 93.6 0.054 1.9E-06 61.4 5.3 22 27-48 47-68 (459)
298 1knq_A Gluconate kinase; ALFA/ 93.6 0.048 1.6E-06 52.4 4.1 23 25-47 8-30 (175)
299 3tau_A Guanylate kinase, GMP k 93.6 0.036 1.2E-06 55.1 3.3 24 25-48 8-31 (208)
300 4eun_A Thermoresistant glucoki 93.5 0.035 1.2E-06 54.8 3.1 23 25-47 29-51 (200)
301 1zu4_A FTSY; GTPase, signal re 93.5 0.41 1.4E-05 50.7 11.5 25 23-47 103-127 (320)
302 1tue_A Replication protein E1; 93.4 0.047 1.6E-06 52.4 3.7 22 26-47 59-80 (212)
303 3tlx_A Adenylate kinase 2; str 93.4 0.064 2.2E-06 54.7 5.0 24 24-47 28-51 (243)
304 3t61_A Gluconokinase; PSI-biol 93.4 0.028 9.6E-07 55.6 2.3 23 25-47 18-40 (202)
305 1nks_A Adenylate kinase; therm 93.4 0.04 1.4E-06 54.1 3.3 22 26-47 2-23 (194)
306 1ex7_A Guanylate kinase; subst 93.4 0.031 1.1E-06 53.7 2.4 22 26-47 2-23 (186)
307 1ls1_A Signal recognition part 93.4 0.2 6.8E-06 52.6 8.7 87 24-113 97-189 (295)
308 3iij_A Coilin-interacting nucl 93.3 0.033 1.1E-06 53.8 2.6 23 25-47 11-33 (180)
309 1y63_A LMAJ004144AAA protein; 93.3 0.042 1.4E-06 53.3 3.3 23 25-47 10-32 (184)
310 2ga8_A Hypothetical 39.9 kDa p 93.3 0.09 3.1E-06 55.7 5.9 44 2-47 3-46 (359)
311 1ukz_A Uridylate kinase; trans 93.3 0.049 1.7E-06 53.9 3.8 25 23-47 13-37 (203)
312 2qt1_A Nicotinamide riboside k 93.3 0.056 1.9E-06 53.7 4.2 25 23-47 19-43 (207)
313 2ze6_A Isopentenyl transferase 93.3 0.043 1.5E-06 56.4 3.4 22 26-47 2-23 (253)
314 2qor_A Guanylate kinase; phosp 93.3 0.035 1.2E-06 55.0 2.7 24 24-47 11-34 (204)
315 2bdt_A BH3686; alpha-beta prot 93.3 0.044 1.5E-06 53.5 3.4 22 26-47 3-24 (189)
316 4gp7_A Metallophosphoesterase; 93.2 0.045 1.5E-06 52.3 3.3 22 25-46 9-30 (171)
317 3cmu_A Protein RECA, recombina 93.2 0.13 4.5E-06 67.2 8.3 84 24-114 1426-1515(2050)
318 1zuh_A Shikimate kinase; alpha 93.2 0.041 1.4E-06 52.4 2.9 24 24-47 6-29 (168)
319 1pgv_A TMD-1, tropomodulin TMD 93.2 0.02 6.9E-07 55.2 0.6 10 963-972 42-51 (197)
320 3a00_A Guanylate kinase, GMP k 93.1 0.035 1.2E-06 54.0 2.4 22 26-47 2-23 (186)
321 1fx0_B ATP synthase beta chain 93.1 0.22 7.5E-06 55.0 8.8 51 27-78 167-218 (498)
322 3tr0_A Guanylate kinase, GMP k 93.1 0.046 1.6E-06 54.2 3.3 22 26-47 8-29 (205)
323 3a4m_A L-seryl-tRNA(SEC) kinas 93.1 0.05 1.7E-06 56.2 3.6 23 25-47 4-26 (260)
324 2yhs_A FTSY, cell division pro 93.1 0.33 1.1E-05 54.0 10.1 43 23-68 291-333 (503)
325 1uf9_A TT1252 protein; P-loop, 93.1 0.054 1.8E-06 53.6 3.7 25 23-47 6-30 (203)
326 1ye8_A Protein THEP1, hypothet 93.1 0.048 1.6E-06 52.3 3.2 21 27-47 2-22 (178)
327 1tev_A UMP-CMP kinase; ploop, 93.0 0.05 1.7E-06 53.4 3.4 23 25-47 3-25 (196)
328 3ney_A 55 kDa erythrocyte memb 93.0 0.048 1.6E-06 52.8 3.1 24 24-47 18-41 (197)
329 1kht_A Adenylate kinase; phosp 93.0 0.047 1.6E-06 53.5 3.1 22 26-47 4-25 (192)
330 3asz_A Uridine kinase; cytidin 93.0 0.054 1.8E-06 54.0 3.6 24 24-47 5-28 (211)
331 1via_A Shikimate kinase; struc 93.0 0.038 1.3E-06 53.1 2.3 21 27-47 6-26 (175)
332 3fwy_A Light-independent proto 93.0 0.1 3.5E-06 55.2 5.8 41 23-65 46-86 (314)
333 1xjc_A MOBB protein homolog; s 92.9 0.079 2.7E-06 49.7 4.3 24 24-47 3-26 (169)
334 2c95_A Adenylate kinase 1; tra 92.9 0.051 1.7E-06 53.4 3.2 23 25-47 9-31 (196)
335 3umf_A Adenylate kinase; rossm 92.9 0.06 2E-06 53.2 3.6 25 23-47 27-51 (217)
336 2cdn_A Adenylate kinase; phosp 92.9 0.058 2E-06 53.3 3.6 25 23-47 18-42 (201)
337 2j41_A Guanylate kinase; GMP, 92.8 0.053 1.8E-06 53.9 3.3 22 26-47 7-28 (207)
338 1q57_A DNA primase/helicase; d 92.8 0.32 1.1E-05 55.8 10.3 52 24-79 241-293 (503)
339 2yvu_A Probable adenylyl-sulfa 92.8 0.069 2.4E-06 51.9 4.0 24 24-47 12-35 (186)
340 2ffh_A Protein (FFH); SRP54, s 92.8 0.3 1E-05 53.7 9.4 24 24-47 97-120 (425)
341 3cm0_A Adenylate kinase; ATP-b 92.8 0.059 2E-06 52.4 3.5 23 25-47 4-26 (186)
342 2ck3_D ATP synthase subunit be 92.8 0.39 1.3E-05 52.8 10.1 52 26-78 154-206 (482)
343 2j37_W Signal recognition part 92.7 0.66 2.3E-05 52.3 12.3 25 23-47 99-123 (504)
344 1jjv_A Dephospho-COA kinase; P 92.7 0.061 2.1E-06 53.4 3.5 22 26-47 3-24 (206)
345 2iyv_A Shikimate kinase, SK; t 92.6 0.042 1.4E-06 53.4 2.1 21 27-47 4-24 (184)
346 1uj2_A Uridine-cytidine kinase 92.6 0.063 2.2E-06 55.2 3.6 25 23-47 20-44 (252)
347 2if2_A Dephospho-COA kinase; a 92.6 0.057 1.9E-06 53.5 3.1 21 27-47 3-23 (204)
348 2plr_A DTMP kinase, probable t 92.6 0.065 2.2E-06 53.5 3.6 22 26-47 5-26 (213)
349 2pez_A Bifunctional 3'-phospho 92.6 0.068 2.3E-06 51.5 3.6 24 24-47 4-27 (179)
350 1qf9_A UMP/CMP kinase, protein 92.5 0.079 2.7E-06 51.9 4.0 23 25-47 6-28 (194)
351 1lvg_A Guanylate kinase, GMP k 92.5 0.048 1.6E-06 53.6 2.4 22 26-47 5-26 (198)
352 1htw_A HI0065; nucleotide-bind 92.5 0.078 2.7E-06 49.5 3.6 23 25-47 33-55 (158)
353 2vli_A Antibiotic resistance p 92.5 0.042 1.4E-06 53.3 1.9 23 25-47 5-27 (183)
354 2bwj_A Adenylate kinase 5; pho 92.5 0.058 2E-06 53.2 3.0 22 26-47 13-34 (199)
355 3e1s_A Exodeoxyribonuclease V, 92.5 0.17 5.8E-06 58.7 7.3 22 26-47 205-226 (574)
356 1e6c_A Shikimate kinase; phosp 92.4 0.05 1.7E-06 52.1 2.4 22 26-47 3-24 (173)
357 2f6r_A COA synthase, bifunctio 92.4 0.074 2.5E-06 55.6 3.8 24 23-46 73-96 (281)
358 2jaq_A Deoxyguanosine kinase; 92.4 0.062 2.1E-06 53.2 3.1 21 27-47 2-22 (205)
359 2jeo_A Uridine-cytidine kinase 92.4 0.074 2.5E-06 54.4 3.7 24 24-47 24-47 (245)
360 2bbw_A Adenylate kinase 4, AK4 92.4 0.063 2.1E-06 55.0 3.2 22 25-46 27-48 (246)
361 2grj_A Dephospho-COA kinase; T 92.4 0.08 2.8E-06 51.3 3.7 24 24-47 11-34 (192)
362 3aez_A Pantothenate kinase; tr 92.3 0.077 2.6E-06 56.1 3.7 25 23-47 88-112 (312)
363 1cke_A CK, MSSA, protein (cyti 92.2 0.067 2.3E-06 54.1 3.2 22 26-47 6-27 (227)
364 2pt5_A Shikimate kinase, SK; a 92.2 0.071 2.4E-06 50.8 3.1 21 27-47 2-22 (168)
365 1s96_A Guanylate kinase, GMP k 92.1 0.074 2.5E-06 52.9 3.1 23 25-47 16-38 (219)
366 2wwf_A Thymidilate kinase, put 92.0 0.073 2.5E-06 53.1 3.1 23 25-47 10-32 (212)
367 1aky_A Adenylate kinase; ATP:A 92.0 0.074 2.5E-06 53.4 3.2 23 25-47 4-26 (220)
368 3zvl_A Bifunctional polynucleo 92.0 0.25 8.5E-06 54.9 7.7 25 23-47 256-280 (416)
369 2z0h_A DTMP kinase, thymidylat 92.0 0.18 6E-06 49.5 5.8 21 27-47 2-22 (197)
370 1nn5_A Similar to deoxythymidy 92.0 0.079 2.7E-06 53.0 3.3 23 25-47 9-31 (215)
371 2hf9_A Probable hydrogenase ni 92.0 0.14 4.9E-06 51.5 5.3 24 24-47 37-60 (226)
372 1zd8_A GTP:AMP phosphotransfer 91.9 0.075 2.6E-06 53.7 3.0 23 25-47 7-29 (227)
373 1znw_A Guanylate kinase, GMP k 91.8 0.082 2.8E-06 52.4 3.2 23 25-47 20-42 (207)
374 2pbr_A DTMP kinase, thymidylat 91.8 0.082 2.8E-06 51.8 3.1 21 27-47 2-22 (195)
375 1z6g_A Guanylate kinase; struc 91.8 0.069 2.4E-06 53.3 2.6 22 26-47 24-45 (218)
376 3llm_A ATP-dependent RNA helic 91.8 0.26 8.8E-06 49.9 6.9 21 26-46 77-97 (235)
377 3hjn_A DTMP kinase, thymidylat 91.7 0.23 7.8E-06 48.4 6.1 49 27-77 2-50 (197)
378 3k1j_A LON protease, ATP-depen 91.7 0.14 4.9E-06 60.2 5.6 40 1-48 44-83 (604)
379 1sq5_A Pantothenate kinase; P- 91.7 0.19 6.6E-06 53.3 6.1 24 24-47 79-102 (308)
380 1zak_A Adenylate kinase; ATP:A 91.7 0.074 2.5E-06 53.5 2.7 23 25-47 5-27 (222)
381 3l0o_A Transcription terminati 91.7 0.064 2.2E-06 56.9 2.2 23 26-48 176-198 (427)
382 1rj9_A FTSY, signal recognitio 91.6 0.092 3.1E-06 55.2 3.4 24 24-47 101-124 (304)
383 3jvv_A Twitching mobility prot 91.6 0.044 1.5E-06 59.1 1.0 111 26-147 124-234 (356)
384 3b9q_A Chloroplast SRP recepto 91.6 0.19 6.5E-06 52.8 5.8 25 23-47 98-122 (302)
385 4e22_A Cytidylate kinase; P-lo 91.5 0.092 3.2E-06 53.9 3.3 23 25-47 27-49 (252)
386 1m7g_A Adenylylsulfate kinase; 91.5 0.11 3.7E-06 51.7 3.6 23 25-47 25-47 (211)
387 3fb4_A Adenylate kinase; psych 91.5 0.093 3.2E-06 52.5 3.2 21 27-47 2-22 (216)
388 2v54_A DTMP kinase, thymidylat 91.4 0.095 3.2E-06 51.8 3.2 23 26-48 5-27 (204)
389 1g8p_A Magnesium-chelatase 38 91.4 0.071 2.4E-06 58.3 2.3 41 1-47 27-67 (350)
390 3dl0_A Adenylate kinase; phosp 91.3 0.099 3.4E-06 52.3 3.2 21 27-47 2-22 (216)
391 1vht_A Dephospho-COA kinase; s 91.3 0.12 4E-06 51.8 3.7 23 25-47 4-26 (218)
392 2ged_A SR-beta, signal recogni 91.3 0.16 5.4E-06 49.7 4.5 25 24-48 47-71 (193)
393 4edh_A DTMP kinase, thymidylat 91.3 0.47 1.6E-05 46.8 7.9 23 25-47 6-28 (213)
394 3p32_A Probable GTPase RV1496/ 91.2 0.34 1.2E-05 52.5 7.5 25 23-47 77-101 (355)
395 3d3q_A TRNA delta(2)-isopenten 91.2 0.11 3.8E-06 54.9 3.4 22 26-47 8-29 (340)
396 2fz4_A DNA repair protein RAD2 91.2 0.48 1.6E-05 47.9 8.1 20 28-47 111-130 (237)
397 3a8t_A Adenylate isopentenyltr 91.1 0.13 4.6E-06 54.0 4.0 24 25-48 40-63 (339)
398 3be4_A Adenylate kinase; malar 91.1 0.09 3.1E-06 52.6 2.6 22 26-47 6-27 (217)
399 1np6_A Molybdopterin-guanine d 91.0 0.12 4E-06 49.1 3.1 24 24-47 5-28 (174)
400 2q6t_A DNAB replication FORK h 91.0 0.72 2.5E-05 51.8 10.1 52 25-79 200-251 (444)
401 2qmh_A HPR kinase/phosphorylas 91.0 0.12 4.3E-06 49.3 3.2 23 26-48 35-57 (205)
402 2og2_A Putative signal recogni 90.9 0.25 8.4E-06 53.1 5.9 25 23-47 155-179 (359)
403 1g41_A Heat shock protein HSLU 90.9 0.21 7.2E-06 55.1 5.5 47 1-47 18-72 (444)
404 2i3b_A HCR-ntpase, human cance 90.9 0.098 3.3E-06 50.6 2.5 21 27-47 3-23 (189)
405 2r8r_A Sensor protein; KDPD, P 90.8 0.24 8.3E-06 48.6 5.2 37 27-65 8-44 (228)
406 2wsm_A Hydrogenase expression/ 90.8 0.18 6.3E-06 50.5 4.7 24 24-47 29-52 (221)
407 1ny5_A Transcriptional regulat 90.8 0.64 2.2E-05 51.0 9.3 42 2-47 141-182 (387)
408 2f1r_A Molybdopterin-guanine d 90.8 0.085 2.9E-06 50.0 2.0 22 26-47 3-24 (171)
409 3bgw_A DNAB-like replicative h 90.8 0.72 2.4E-05 51.5 9.8 50 25-78 197-246 (444)
410 3exa_A TRNA delta(2)-isopenten 90.8 0.14 4.6E-06 53.2 3.6 23 25-47 3-25 (322)
411 1gtv_A TMK, thymidylate kinase 90.8 0.069 2.4E-06 53.4 1.4 21 27-47 2-22 (214)
412 4a74_A DNA repair and recombin 90.7 0.13 4.3E-06 52.1 3.4 24 24-47 24-47 (231)
413 3r20_A Cytidylate kinase; stru 90.7 0.13 4.3E-06 51.4 3.2 22 26-47 10-31 (233)
414 3lnc_A Guanylate kinase, GMP k 90.7 0.087 3E-06 53.3 2.0 22 25-46 27-48 (231)
415 3nwj_A ATSK2; P loop, shikimat 90.6 0.1 3.6E-06 52.9 2.5 22 26-47 49-70 (250)
416 2ehv_A Hypothetical protein PH 90.6 0.12 4.2E-06 53.1 3.2 22 25-46 30-51 (251)
417 3crm_A TRNA delta(2)-isopenten 90.5 0.14 4.7E-06 53.8 3.4 22 26-47 6-27 (323)
418 3ake_A Cytidylate kinase; CMP 90.5 0.13 4.5E-06 51.0 3.2 21 27-47 4-24 (208)
419 2onk_A Molybdate/tungstate ABC 90.5 0.13 4.4E-06 52.0 3.1 22 26-47 25-46 (240)
420 3vkw_A Replicase large subunit 90.3 0.63 2.1E-05 51.0 8.5 27 21-47 157-183 (446)
421 3foz_A TRNA delta(2)-isopenten 90.3 0.17 5.9E-06 52.3 3.9 24 24-47 9-32 (316)
422 1a7j_A Phosphoribulokinase; tr 90.3 0.075 2.6E-06 55.7 1.2 23 25-47 5-27 (290)
423 3gqb_B V-type ATP synthase bet 90.2 0.2 6.9E-06 54.7 4.4 87 27-113 149-260 (464)
424 2dr3_A UPF0273 protein PH0284; 90.2 0.19 6.7E-06 51.4 4.3 38 25-64 23-60 (247)
425 3vr4_D V-type sodium ATPase su 90.2 0.19 6.5E-06 54.9 4.2 87 27-113 153-257 (465)
426 3tif_A Uncharacterized ABC tra 90.2 0.15 5E-06 51.5 3.2 22 26-47 32-53 (235)
427 3cmw_A Protein RECA, recombina 90.1 0.43 1.5E-05 61.7 8.1 85 24-115 382-472 (1706)
428 1e4v_A Adenylate kinase; trans 90.1 0.15 5E-06 50.9 3.1 21 27-47 2-22 (214)
429 1ak2_A Adenylate kinase isoenz 90.1 0.15 5.3E-06 51.5 3.3 23 25-47 16-38 (233)
430 3sr0_A Adenylate kinase; phosp 90.1 0.16 5.3E-06 49.9 3.2 21 27-47 2-22 (206)
431 2xb4_A Adenylate kinase; ATP-b 90.1 0.15 5.1E-06 51.2 3.1 21 27-47 2-22 (223)
432 2r6a_A DNAB helicase, replicat 90.0 0.65 2.2E-05 52.3 8.8 50 25-77 203-252 (454)
433 2pcj_A ABC transporter, lipopr 90.0 0.15 5E-06 51.1 3.0 22 26-47 31-52 (224)
434 1u0j_A DNA replication protein 90.0 0.28 9.5E-06 49.7 5.0 23 25-47 104-126 (267)
435 3cmw_A Protein RECA, recombina 90.0 0.41 1.4E-05 61.9 7.7 84 23-113 1429-1518(1706)
436 2vp4_A Deoxynucleoside kinase; 89.9 0.16 5.5E-06 51.2 3.3 25 23-47 18-42 (230)
437 3end_A Light-independent proto 89.8 0.33 1.1E-05 51.6 5.8 43 23-67 39-81 (307)
438 2cbz_A Multidrug resistance-as 89.8 0.16 5.6E-06 51.2 3.2 23 26-48 32-54 (237)
439 4eaq_A DTMP kinase, thymidylat 89.7 0.3 1E-05 49.0 5.0 24 24-47 25-48 (229)
440 2aka_B Dynamin-1; fusion prote 89.7 3.3 0.00011 43.5 13.6 42 7-48 8-49 (299)
441 3b85_A Phosphate starvation-in 89.7 0.12 4.3E-06 50.7 2.1 21 27-47 24-44 (208)
442 1ltq_A Polynucleotide kinase; 89.7 0.17 5.9E-06 53.6 3.4 22 26-47 3-24 (301)
443 4akg_A Glutathione S-transfera 89.6 1.3 4.6E-05 60.3 12.4 139 26-174 1268-1431(2695)
444 1b0u_A Histidine permease; ABC 89.5 0.18 6E-06 51.9 3.2 22 26-47 33-54 (262)
445 3b5x_A Lipid A export ATP-bind 89.5 1.1 3.6E-05 52.5 10.2 22 26-47 370-391 (582)
446 1mv5_A LMRA, multidrug resista 89.4 0.21 7.1E-06 50.8 3.6 23 25-47 28-50 (243)
447 3gfo_A Cobalt import ATP-bindi 89.4 0.17 6E-06 52.2 3.0 22 26-47 35-56 (275)
448 1xx6_A Thymidine kinase; NESG, 89.4 0.091 3.1E-06 50.8 0.8 109 25-144 8-118 (191)
449 2olj_A Amino acid ABC transpor 89.3 0.18 6.3E-06 51.6 3.2 22 26-47 51-72 (263)
450 1svm_A Large T antigen; AAA+ f 89.3 0.18 6.2E-06 54.6 3.3 24 24-47 168-191 (377)
451 1sgw_A Putative ABC transporte 89.3 0.15 5.3E-06 50.3 2.5 22 26-47 36-57 (214)
452 3dzd_A Transcriptional regulat 89.2 0.41 1.4E-05 52.1 6.0 21 27-47 154-174 (368)
453 1ji0_A ABC transporter; ATP bi 89.1 0.19 6.5E-06 50.9 3.1 22 26-47 33-54 (240)
454 1vpl_A ABC transporter, ATP-bi 89.1 0.2 6.8E-06 51.2 3.2 22 26-47 42-63 (256)
455 3fkq_A NTRC-like two-domain pr 89.0 0.75 2.6E-05 50.2 8.0 43 21-65 139-182 (373)
456 2c61_A A-type ATP synthase non 89.0 0.24 8.3E-06 54.5 4.0 87 27-113 154-258 (469)
457 1g6h_A High-affinity branched- 89.0 0.2 6.7E-06 51.4 3.1 22 26-47 34-55 (257)
458 2pze_A Cystic fibrosis transme 88.9 0.2 6.8E-06 50.3 3.0 22 26-47 35-56 (229)
459 4g1u_C Hemin import ATP-bindin 88.9 0.19 6.6E-06 51.6 3.0 22 26-47 38-59 (266)
460 1yrb_A ATP(GTP)binding protein 88.9 0.26 9.1E-06 50.9 4.1 25 23-47 12-36 (262)
461 2eyu_A Twitching motility prot 88.9 0.24 8.3E-06 50.7 3.7 109 25-146 25-135 (261)
462 2zu0_C Probable ATP-dependent 88.9 0.21 7.3E-06 51.4 3.3 22 26-47 47-68 (267)
463 2ghi_A Transport protein; mult 88.8 0.21 7.2E-06 51.2 3.2 22 26-47 47-68 (260)
464 2d2e_A SUFC protein; ABC-ATPas 88.8 0.21 7.2E-06 50.9 3.2 22 26-47 30-51 (250)
465 2v9p_A Replication protein E1; 88.8 0.2 7E-06 52.2 3.1 23 25-47 126-148 (305)
466 2ff7_A Alpha-hemolysin translo 88.8 0.21 7.1E-06 50.8 3.1 22 26-47 36-57 (247)
467 1q3t_A Cytidylate kinase; nucl 88.7 0.22 7.6E-06 50.4 3.3 24 24-47 15-38 (236)
468 3io3_A DEHA2D07832P; chaperone 88.7 0.42 1.4E-05 51.3 5.5 43 24-68 17-61 (348)
469 2ocp_A DGK, deoxyguanosine kin 88.7 0.24 8.3E-06 50.4 3.6 23 25-47 2-24 (241)
470 2v3c_C SRP54, signal recogniti 88.7 0.26 8.8E-06 54.7 3.9 25 23-47 97-121 (432)
471 2qi9_C Vitamin B12 import ATP- 88.7 0.21 7.3E-06 50.7 3.0 22 26-47 27-48 (249)
472 2afh_E Nitrogenase iron protei 88.6 0.46 1.6E-05 49.9 5.8 41 25-67 2-42 (289)
473 3iqw_A Tail-anchored protein t 88.6 0.44 1.5E-05 50.8 5.6 43 24-68 15-57 (334)
474 2wji_A Ferrous iron transport 88.6 0.29 9.9E-06 46.2 3.8 23 26-48 4-26 (165)
475 3eph_A TRNA isopentenyltransfe 88.6 0.24 8.3E-06 53.4 3.5 22 26-47 3-24 (409)
476 1oix_A RAS-related protein RAB 88.5 0.23 7.8E-06 48.4 3.1 24 25-48 29-52 (191)
477 2ixe_A Antigen peptide transpo 88.5 0.22 7.7E-06 51.3 3.2 22 26-47 46-67 (271)
478 1cp2_A CP2, nitrogenase iron p 88.5 0.47 1.6E-05 49.2 5.7 40 26-67 2-41 (269)
479 1cr0_A DNA primase/helicase; R 88.4 0.23 7.8E-06 52.5 3.3 23 25-47 35-57 (296)
480 2yz2_A Putative ABC transporte 88.4 0.23 8E-06 51.1 3.2 22 26-47 34-55 (266)
481 1nlf_A Regulatory protein REPA 88.4 0.23 7.7E-06 52.0 3.1 23 25-47 30-52 (279)
482 2j9r_A Thymidine kinase; TK1, 88.3 0.17 5.8E-06 49.2 2.0 111 24-145 27-139 (214)
483 2r9v_A ATP synthase subunit al 88.3 0.56 1.9E-05 51.9 6.2 83 27-113 177-276 (515)
484 2nq2_C Hypothetical ABC transp 88.3 0.23 7.8E-06 50.7 3.0 22 26-47 32-53 (253)
485 3f9v_A Minichromosome maintena 88.2 0.17 5.7E-06 59.1 2.2 22 27-48 329-350 (595)
486 2ihy_A ABC transporter, ATP-bi 88.1 0.24 8.1E-06 51.4 3.0 22 26-47 48-69 (279)
487 2ck3_A ATP synthase subunit al 88.1 0.51 1.8E-05 52.3 5.8 87 27-113 164-271 (510)
488 2zej_A Dardarin, leucine-rich 88.1 0.24 8.2E-06 47.9 2.9 22 27-48 4-25 (184)
489 3oaa_A ATP synthase subunit al 88.1 1.5 5E-05 48.5 9.2 83 27-113 164-263 (513)
490 3mfy_A V-type ATP synthase alp 88.0 1.4 4.7E-05 49.2 9.0 47 26-76 228-275 (588)
491 1w36_D RECD, exodeoxyribonucle 87.9 0.65 2.2E-05 54.4 7.0 22 26-47 165-186 (608)
492 1pgv_A TMD-1, tropomodulin TMD 87.9 0.11 3.8E-06 50.0 0.3 37 985-1021 41-82 (197)
493 3ld9_A DTMP kinase, thymidylat 87.9 0.58 2E-05 46.3 5.5 26 23-48 19-44 (223)
494 2dyk_A GTP-binding protein; GT 87.9 0.3 1E-05 45.7 3.4 23 26-48 2-24 (161)
495 2o8b_B DNA mismatch repair pro 87.8 0.39 1.3E-05 59.5 5.1 21 25-45 789-809 (1022)
496 2f9l_A RAB11B, member RAS onco 87.8 0.25 8.7E-06 48.4 2.9 23 26-48 6-28 (199)
497 2qe7_A ATP synthase subunit al 87.7 0.6 2E-05 51.7 6.0 83 27-113 164-263 (502)
498 3lv8_A DTMP kinase, thymidylat 87.5 0.67 2.3E-05 46.4 5.8 24 25-48 27-50 (236)
499 2xau_A PRE-mRNA-splicing facto 87.4 1.2 4E-05 53.8 9.0 33 6-46 98-130 (773)
500 2lkc_A Translation initiation 87.2 0.41 1.4E-05 45.8 4.0 25 24-48 7-31 (178)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.1e-50 Score=499.73 Aligned_cols=619 Identities=18% Similarity=0.118 Sum_probs=447.1
Q ss_pred eeeccCcccccc----ccccccCcccccccccCCCCccccCcccccCCCccEEeccCcchhccccc--cccCCCCcceee
Q 038861 391 VFSLWGYCNIFN----LPNEIGNLRHLRFLNLSGTNIQILPESINSLYNLHTILLEDCRRLKKLCN--DMGNLTKLHHLR 464 (1165)
Q Consensus 391 ~l~l~~~~~l~~----lp~~~~~l~~Lr~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~ 464 (1165)
.+++.++ .+.. +|.++.++++|++++++.+.+..+|..++++++|++|+|++|...+.+|. .++++++|++|+
T Consensus 54 ~L~L~~~-~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~ 132 (768)
T 3rgz_A 54 SIDLSSK-PLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLN 132 (768)
T ss_dssp EEECTTS-CCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEE
T ss_pred EEECCCC-CcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEE
Confidence 5667666 4433 78889999999999999999888889999999999999999998888888 899999999999
Q ss_pred ccCCCCCCCCCCCc-ccccccceeceEEeccccCCCccccCCccccccceeeccccCCCchhhhhHhhcCCCcCccceEe
Q 038861 465 NSNVHSLGEMPKGF-GKLTCLLTLGRFVVGKVSGSGLRELKSLTHLQETLRISKLENVKDVCDACEAQLNNKVNLKALLL 543 (1165)
Q Consensus 465 l~~~~~~~~~p~~i-~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 543 (1165)
+++|.+.+.+|..+ +++++|++|..
T Consensus 133 Ls~n~l~~~~~~~~~~~l~~L~~L~L------------------------------------------------------ 158 (768)
T 3rgz_A 133 VSSNTLDFPGKVSGGLKLNSLEVLDL------------------------------------------------------ 158 (768)
T ss_dssp CCSSEEECCSSCCSCCCCTTCSEEEC------------------------------------------------------
T ss_pred CcCCccCCcCCHHHhccCCCCCEEEC------------------------------------------------------
Confidence 99999777777765 77888887731
Q ss_pred eeccccccCccchhhHHhhhcc---CCCCcCcceEEEEeeCCCCCCcCcCCCCCCceeEEeEcccCCCCCCCCCCCCCCC
Q 038861 544 EWSIWHVRNLDQCEFETRVLSM---LKPYQDVQELTITGYGGPKFPIWLGDSSFSKLVRLKFEHCGTSTSLPSVGQLPFL 620 (1165)
Q Consensus 544 ~~~~~~~~~l~~~~~~~~~~~~---l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L 620 (1165)
+.+.+....+.. +..+++|+.|++++|........ ..+++|+.|++++|.+...+|.++.+++|
T Consensus 159 ----------s~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L 225 (768)
T 3rgz_A 159 ----------SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPFLGDCSAL 225 (768)
T ss_dssp ----------CSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC---TTCTTCCEEECCSSCCCSCCCBCTTCCSC
T ss_pred ----------CCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc---ccCCcCCEEECcCCcCCCCCcccccCCCC
Confidence 111111111222 45567778888877765443332 24778888888888888777778888888
Q ss_pred ceeeecCCCCceEeCccccCCCCccCCCCcceeeccccccccccccCCCCCcccCcCCccceeeecCCcccccCCCcccc
Q 038861 621 KELVISGMGRVKSVGSEFYGSSCSVPFPSLETLYFANMQEWEEWIPFGSGQEVDEVFPKLRKLSLFSCSKLQGALPKRLL 700 (1165)
Q Consensus 621 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~ 700 (1165)
++|++++|...+.++..+.. +++|++|+++++.. .+..+. ..+++|++|++++ +++++.+|..+
T Consensus 226 ~~L~Ls~n~l~~~~~~~l~~------l~~L~~L~Ls~n~l-~~~~~~-------~~l~~L~~L~L~~-n~l~~~ip~~~- 289 (768)
T 3rgz_A 226 QHLDISGNKLSGDFSRAIST------CTELKLLNISSNQF-VGPIPP-------LPLKSLQYLSLAE-NKFTGEIPDFL- 289 (768)
T ss_dssp CEEECCSSCCCSCHHHHTTT------CSSCCEEECCSSCC-EESCCC-------CCCTTCCEEECCS-SEEEESCCCCS-
T ss_pred CEEECcCCcCCCcccHHHhc------CCCCCEEECCCCcc-cCccCc-------cccCCCCEEECcC-CccCCccCHHH-
Confidence 88888888776666666655 78888888887643 222221 1378888888888 56666666432
Q ss_pred ccceEEeecccccccccCCCCCceEEEEecCCcccccCcccccccccccccccceeEec-cCCC--ccccCCcCceEecC
Q 038861 701 LLERLVIQSCKQLLVTIQCLPALSELQIKGCKRVVLSSPMDLSSLKSVLLGEMANEVIS-GCPQ--LLSLVTEDDLELSN 777 (1165)
Q Consensus 701 ~L~~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~~~l~~~~i~-~~~~--l~~l~~L~~L~l~~ 777 (1165)
...+++|+.|++++| .+....|..+..++.|+.+++++|.+. .++. +..+++|++|++++
T Consensus 290 ----------------~~~~~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~ 352 (768)
T 3rgz_A 290 ----------------SGACDTLTGLDLSGN-HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352 (768)
T ss_dssp ----------------CTTCTTCSEEECCSS-EEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS
T ss_pred ----------------HhhcCcCCEEECcCC-cCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC
Confidence 122467777777773 455566677777777777777777776 4542 67788888888888
Q ss_pred CCCccccchhhcCCC-CcceEEEcCCCCccccCCC-CC--cccccEEEeccCCCCCCChHHHhhcCccccccccccceee
Q 038861 778 CKGLTKLPQALLTLS-SLRELRISGCASLVSFPQA-AL--PSQLRTFKIEHCNALESLPEAWMRNSNSSLQSLEIGTIEI 853 (1165)
Q Consensus 778 ~~~~~~~~~~~~~l~-~L~~L~l~~~~~l~~~~~~-~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l 853 (1165)
|.+.+.+|..+..++ +|+.|++++|.....++.. .. +++|++|++++|.+...+|..+.. ..+|+.|++++|.+
T Consensus 353 n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~--l~~L~~L~Ls~N~l 430 (768)
T 3rgz_A 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN--CSELVSLHLSFNYL 430 (768)
T ss_dssp SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG--CTTCCEEECCSSEE
T ss_pred CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc--CCCCCEEECcCCcc
Confidence 888878888888777 8888888888765554432 22 567888888888877777766543 35677777777766
Q ss_pred cccccccCCchhhhcCCCCCcceEEEeCCCCCcccc-ccCCccccceEeeccCcCcccccCCcCccccCCCCccccccCC
Q 038861 854 EECNALESLPEAWMQDSSTSLESLNIDGCDSLTYIA-RIQLPPSLRRLIISDCYNLRTLTGDQGICSSRSGRTSLTSFSS 932 (1165)
Q Consensus 854 ~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~ 932 (1165)
.+. +|.. ...+++|+.|++++|.....++ .+..+++|++|++++|..
T Consensus 431 ~~~-----~p~~--l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l------------------------- 478 (768)
T 3rgz_A 431 SGT-----IPSS--LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL------------------------- 478 (768)
T ss_dssp ESC-----CCGG--GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC-------------------------
T ss_pred cCc-----ccHH--HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc-------------------------
Confidence 542 1111 2346788888888887665444 456677888888887742
Q ss_pred CCcccccccceeecccccccccccCCCCCCCccEEEEcCCCCchhhhhhccc-CccceeeeecccccccCCcccCCCCCC
Q 038861 933 ENELPATLEQLEVRFCSNLAFLSRNGNLPQALKYLEVSYCSKLESLAERLDN-TSLEVIAISYLENLKSLPAGLHNLHHL 1011 (1165)
Q Consensus 933 ~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~n~~~~~~p~~~~~l~~L 1011 (1165)
.+.+|..+..+ ++|+.|++++|.+.+.+|..+.. ++|++|++++|.+.+.+|..+.++++|
T Consensus 479 ~~~~p~~l~~l------------------~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 540 (768)
T 3rgz_A 479 TGEIPSGLSNC------------------TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540 (768)
T ss_dssp CSCCCGGGGGC------------------TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTC
T ss_pred cCcCCHHHhcC------------------CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCC
Confidence 22223333222 56888999999888788877665 889999999999988888888889999
Q ss_pred CEEEEeCCCCCccccCCCCCCCCcCeE----------------------------------------------EeecCCC
Q 038861 1012 QELKVYGCPNLESFPEGGLPSTKLTKL----------------------------------------------TIGYCEN 1045 (1165)
Q Consensus 1012 ~~L~L~~n~~~~~~~~~~~~l~~L~~L----------------------------------------------~L~~n~~ 1045 (1165)
++|++++|++.+.+|..+.....+..+ ++..|.+
T Consensus 541 ~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 620 (768)
T 3rgz_A 541 IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620 (768)
T ss_dssp CEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEE
T ss_pred CEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccccee
Confidence 999999998888888766554433332 2233445
Q ss_pred CCcCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCCCCcccCCC
Q 038861 1046 LKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCPVLLSSPW 1124 (1165)
Q Consensus 1046 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 1124 (1165)
.+.+|..+..+++|+.|++++|++.+.+|.. +.+++|+.|++++|++++.+|.. +.++++|+.|+|++|.........
T Consensus 621 ~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-l~~L~~L~~LdLs~N~l~g~ip~~ 699 (768)
T 3rgz_A 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE-VGDLRGLNILDLSSNKLDGRIPQA 699 (768)
T ss_dssp EEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCEECCCGG
T ss_pred cccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChH-HhCCCCCCEEECCCCcccCcCChH
Confidence 5566777888888999999999998888877 88889999999999998877765 888999999999888665222211
Q ss_pred --CCCcccEEEecCCCCcccHHHhhhcCCccceEeecCCCCC
Q 038861 1125 --FPASLTVLHISYMPNLESLSLIVENLTSLEILILCKCPKL 1164 (1165)
Q Consensus 1125 --~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l 1164 (1165)
-.++|++|++++|+..+.+|.. ..+.++....+.|||.|
T Consensus 700 l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~L 740 (768)
T 3rgz_A 700 MSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGL 740 (768)
T ss_dssp GGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEE
T ss_pred HhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchh
Confidence 2467889999998777777754 44555566666677643
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.6e-49 Score=486.98 Aligned_cols=625 Identities=18% Similarity=0.115 Sum_probs=371.0
Q ss_pred ccccCCCCcceeeccceeeeccCccccccccccccCcccccccccCCCCcc-ccCc--ccccCCCccEEeccCcchhccc
Q 038861 374 KSICDGEHLRTFLPVKLVFSLWGYCNIFNLPNEIGNLRHLRFLNLSGTNIQ-ILPE--SINSLYNLHTILLEDCRRLKKL 450 (1165)
Q Consensus 374 ~~~~~~~~l~~l~~~~~~l~l~~~~~l~~lp~~~~~l~~Lr~L~L~~~~i~-~lp~--~~~~L~~L~~L~L~~~~~~~~l 450 (1165)
..+..+++|+ ++++..+ .+..+|..|+++++|++|+|++|.+. .+|. .++++++|++|++++|.....+
T Consensus 71 ~~l~~L~~L~-------~l~~~~~-~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 142 (768)
T 3rgz_A 71 SSLLSLTGLE-------SLFLSNS-HINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142 (768)
T ss_dssp HHTTTCTTCC-------EEECTTS-CEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCS
T ss_pred hhHhccCccc-------ccCCcCC-CcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcC
Confidence 3455666666 6677776 66778899999999999999999998 6788 8999999999999999888888
Q ss_pred cccc-cCCCCcceeeccCCCCCCCCCCC---cccccccceeceEEeccccCCCccccCCccccccceeeccccCCCchhh
Q 038861 451 CNDM-GNLTKLHHLRNSNVHSLGEMPKG---FGKLTCLLTLGRFVVGKVSGSGLRELKSLTHLQETLRISKLENVKDVCD 526 (1165)
Q Consensus 451 p~~i-~~L~~L~~L~l~~~~~~~~~p~~---i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~ 526 (1165)
|..+ .++++|++|++++|.+.+..|.. ++++++|++|.....
T Consensus 143 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n---------------------------------- 188 (768)
T 3rgz_A 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN---------------------------------- 188 (768)
T ss_dssp SCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSS----------------------------------
T ss_pred CHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCC----------------------------------
Confidence 8776 89999999999999976666655 677777777732111
Q ss_pred hhHhhcCCCcCccceEeeeccccccCccchhhHHhhhccCCCCcCcceEEEEeeCCCCCCcCcCCCCCCceeEEeEcccC
Q 038861 527 ACEAQLNNKVNLKALLLEWSIWHVRNLDQCEFETRVLSMLKPYQDVQELTITGYGGPKFPIWLGDSSFSKLVRLKFEHCG 606 (1165)
Q Consensus 527 ~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~ 606 (1165)
.+.. ...+..+++|+.|++++|.....++.+. .+++|+.|++++|.
T Consensus 189 ------------------------------~l~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~l~--~l~~L~~L~Ls~n~ 234 (768)
T 3rgz_A 189 ------------------------------KISG--DVDVSRCVNLEFLDVSSNNFSTGIPFLG--DCSALQHLDISGNK 234 (768)
T ss_dssp ------------------------------EEES--CCBCTTCTTCCEEECCSSCCCSCCCBCT--TCCSCCEEECCSSC
T ss_pred ------------------------------cccc--cCCcccCCcCCEEECcCCcCCCCCcccc--cCCCCCEEECcCCc
Confidence 1100 0011334556666666655544333332 35566666666666
Q ss_pred CCCCCC-CCCCCCCCceeeecCCCCceEeCccccCCCCccCCCCcceeeccccccccccccCCCCCcccCcCCccceeee
Q 038861 607 TSTSLP-SVGQLPFLKELVISGMGRVKSVGSEFYGSSCSVPFPSLETLYFANMQEWEEWIPFGSGQEVDEVFPKLRKLSL 685 (1165)
Q Consensus 607 ~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l 685 (1165)
+.+.+| .++.+++|++|++++|...+.++.. . +++|++|+++++. +.+..+...+ ..+++|++|++
T Consensus 235 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~------l~~L~~L~L~~n~-l~~~ip~~~~----~~~~~L~~L~L 301 (768)
T 3rgz_A 235 LSGDFSRAISTCTELKLLNISSNQFVGPIPPL--P------LKSLQYLSLAENK-FTGEIPDFLS----GACDTLTGLDL 301 (768)
T ss_dssp CCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--C------CTTCCEEECCSSE-EEESCCCCSC----TTCTTCSEEEC
T ss_pred CCCcccHHHhcCCCCCEEECCCCcccCccCcc--c------cCCCCEEECcCCc-cCCccCHHHH----hhcCcCCEEEC
Confidence 554444 3566666666666666544433332 1 5666666666543 2222222211 12356666666
Q ss_pred cCCcccccCCCccc---cccceEEeeccc---ccccc-cCCCCCceEEEEecCCcccccCcccccccc-cccccccceeE
Q 038861 686 FSCSKLQGALPKRL---LLLERLVIQSCK---QLLVT-IQCLPALSELQIKGCKRVVLSSPMDLSSLK-SVLLGEMANEV 757 (1165)
Q Consensus 686 ~~c~~l~~~~p~~l---~~L~~L~~~~~~---~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~l~-~l~~~~l~~~~ 757 (1165)
++ +.+++.+|..+ ++|+.|++.+|. .++.. +..+++|+.|++++| .+....|..+..+. .++.+++++|.
T Consensus 302 s~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~~L~~L~Ls~N~ 379 (768)
T 3rgz_A 302 SG-NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN-EFSGELPESLTNLSASLLTLDLSSNN 379 (768)
T ss_dssp CS-SEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS-EEEECCCTTHHHHTTTCSEEECCSSE
T ss_pred cC-CcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC-ccCccccHHHHhhhcCCcEEEccCCC
Confidence 66 34554555433 334444444443 22222 677888888888874 45556677777776 78888888887
Q ss_pred eccC--CCccc--cCCcCceEecCCCCccccchhhcCCCCcceEEEcCCCCccccCC-CCCcccccEEEeccCCCCCCCh
Q 038861 758 ISGC--PQLLS--LVTEDDLELSNCKGLTKLPQALLTLSSLRELRISGCASLVSFPQ-AALPSQLRTFKIEHCNALESLP 832 (1165)
Q Consensus 758 i~~~--~~l~~--l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~ 832 (1165)
+.+. +.+.. +++|++|++++|.+.+.+|..+..+++|+.|++++|.....+|. ...+++|++|++++|.+...+|
T Consensus 380 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 459 (768)
T 3rgz_A 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459 (768)
T ss_dssp EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred cCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCC
Confidence 7642 33333 66788888888888888888888888888888888866545443 3446788888888888777777
Q ss_pred HHHhhcCccccccccccceeecccccccCCchhhhcCCCCCcceEEEeCCCCCcccc-ccCCccccceEeeccCcCcccc
Q 038861 833 EAWMRNSNSSLQSLEIGTIEIEECNALESLPEAWMQDSSTSLESLNIDGCDSLTYIA-RIQLPPSLRRLIISDCYNLRTL 911 (1165)
Q Consensus 833 ~~~~~~~~~~L~~l~l~~~~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~l 911 (1165)
..+.. ..+|+.|++++|.+.+. +|.. ...+++|++|++++|.....++ .+..+++|++|++++|...
T Consensus 460 ~~~~~--l~~L~~L~L~~N~l~~~-----~p~~--l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--- 527 (768)
T 3rgz_A 460 QELMY--VKTLETLILDFNDLTGE-----IPSG--LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS--- 527 (768)
T ss_dssp GGGGG--CTTCCEEECCSSCCCSC-----CCGG--GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE---
T ss_pred HHHcC--CCCceEEEecCCcccCc-----CCHH--HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCccc---
Confidence 65532 24555555555544321 1111 1235566666666665543333 3445556666666655311
Q ss_pred cCCcCccccCCCCccccccCCCCcccccccceeecccccccccccCCCCCCCccEEEEcCCCCchhhhhhccc-Ccccee
Q 038861 912 TGDQGICSSRSGRTSLTSFSSENELPATLEQLEVRFCSNLAFLSRNGNLPQALKYLEVSYCSKLESLAERLDN-TSLEVI 990 (1165)
Q Consensus 912 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L 990 (1165)
+.+|..+..+ ++|+.|++++|.+.+.+|..+.. ..+..+
T Consensus 528 ----------------------~~~p~~l~~l------------------~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~ 567 (768)
T 3rgz_A 528 ----------------------GNIPAELGDC------------------RSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 567 (768)
T ss_dssp ----------------------EECCGGGGGC------------------TTCCEEECCSSEEESBCCGGGGTTTTCBCC
T ss_pred ----------------------CcCCHHHcCC------------------CCCCEEECCCCccCCcCChHHhcccchhhh
Confidence 1122222222 44666666666666555554332 222211
Q ss_pred eeec---------c-------------cccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCc
Q 038861 991 AISY---------L-------------ENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKA 1048 (1165)
Q Consensus 991 ~L~~---------n-------------~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 1048 (1165)
++.. + .+.+..+..+..++.+..+++..|...+.+|..+..+++|+.|++++|.+.+.
T Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ 647 (768)
T 3rgz_A 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 647 (768)
T ss_dssp STTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSC
T ss_pred hccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccccc
Confidence 1111 0 01111122222233333334444444555566666666677777777766666
Q ss_pred CCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCCCC-cccCCCCC
Q 038861 1049 LPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCPV-LLSSPWFP 1126 (1165)
Q Consensus 1049 ~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~ 1126 (1165)
+|..|+++++|+.|+|++|++.+.+|.. +.+++|+.|++++|++++.+|.. +.++++|++|++++|... .++....+
T Consensus 648 ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~L~ls~N~l~g~iP~~~~~ 726 (768)
T 3rgz_A 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA-MSALTMLTEIDLSNNNLSGPIPEMGQF 726 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG-GGGCCCCSEEECCSSEEEEECCSSSSG
T ss_pred CCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECcCCcccccCCCchhh
Confidence 6666666677777777777666666665 66666777777777766655543 666666777766665332 12211222
Q ss_pred CcccEEEecCCCCccc
Q 038861 1127 ASLTVLHISYMPNLES 1142 (1165)
Q Consensus 1127 ~~L~~L~l~~~~~l~~ 1142 (1165)
.++....+.+|+.+..
T Consensus 727 ~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 727 ETFPPAKFLNNPGLCG 742 (768)
T ss_dssp GGSCGGGGCSCTEEES
T ss_pred ccCCHHHhcCCchhcC
Confidence 3344444556665544
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.4e-42 Score=421.60 Aligned_cols=571 Identities=15% Similarity=0.111 Sum_probs=288.2
Q ss_pred eeeccCccccccccccccCcccccccccCCCCccccCc-ccccCCCccEEeccCcchhccccccccCCCCcceeeccCCC
Q 038861 391 VFSLWGYCNIFNLPNEIGNLRHLRFLNLSGTNIQILPE-SINSLYNLHTILLEDCRRLKKLCNDMGNLTKLHHLRNSNVH 469 (1165)
Q Consensus 391 ~l~l~~~~~l~~lp~~~~~l~~Lr~L~L~~~~i~~lp~-~~~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 469 (1165)
++++++. ++..+|..+. .++++|+|++|.+..+|. .|+++++|++|++++|...+..|..|+++++|++|++++|.
T Consensus 8 ~~~cs~~-~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 8 VADCSHL-KLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp EEECCSS-CCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred eeECCCC-CccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 5677776 7888998775 789999999999998765 58999999999999988777778889999999999999998
Q ss_pred CCCCCCC-CcccccccceeceEEeccccCCCccccCCccccccceeeccccCCCchhhhhHhhcCCCcCccceEeeeccc
Q 038861 470 SLGEMPK-GFGKLTCLLTLGRFVVGKVSGSGLRELKSLTHLQETLRISKLENVKDVCDACEAQLNNKVNLKALLLEWSIW 548 (1165)
Q Consensus 470 ~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 548 (1165)
+..+|. .|+.+++|++|.
T Consensus 85 -l~~l~~~~~~~l~~L~~L~------------------------------------------------------------ 103 (680)
T 1ziw_A 85 -LSQLSDKTFAFCTNLTELH------------------------------------------------------------ 103 (680)
T ss_dssp -CCCCCTTTTTTCTTCSEEE------------------------------------------------------------
T ss_pred -cCccChhhhccCCCCCEEE------------------------------------------------------------
Confidence 555554 466666666662
Q ss_pred cccCccchhhHHhhhccCCCCcCcceEEEEeeCCCCCCc-CcCCCCCCceeEEeEcccCCCCCCCC---CCCCCCCceee
Q 038861 549 HVRNLDQCEFETRVLSMLKPYQDVQELTITGYGGPKFPI-WLGDSSFSKLVRLKFEHCGTSTSLPS---VGQLPFLKELV 624 (1165)
Q Consensus 549 ~~~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~~~~L~~L~L~~~~~~~~l~~---l~~l~~L~~L~ 624 (1165)
+..+.+....+..+..+++|+.|++++|.....+. .+. .+++|+.|++++|.+....+. ...+++|++|+
T Consensus 104 ----L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 177 (680)
T 1ziw_A 104 ----LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV--QLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177 (680)
T ss_dssp ----CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSS--CCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEE
T ss_pred ----CCCCccCccChhHccccCCCCEEECCCCcccccCchhhc--ccccCCEEEccCCcccccCHHHhhccccccccEEE
Confidence 11111111112233334444444444444333321 121 244444444444444333221 11234444444
Q ss_pred ecCCCCceEeCccccCCCCccCCCCcceeeccccccccccccCCCCCcccCcCCccceeeecCCcccccCCCccccccce
Q 038861 625 ISGMGRVKSVGSEFYGSSCSVPFPSLETLYFANMQEWEEWIPFGSGQEVDEVFPKLRKLSLFSCSKLQGALPKRLLLLER 704 (1165)
Q Consensus 625 l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~ 704 (1165)
+++|...+..+..+.. +++|+.|.+.++. +......
T Consensus 178 L~~n~l~~~~~~~~~~------l~~L~~L~l~~~~-------------------------------l~~~~~~------- 213 (680)
T 1ziw_A 178 LSSNQIKEFSPGCFHA------IGRLFGLFLNNVQ-------------------------------LGPSLTE------- 213 (680)
T ss_dssp CTTCCCCCBCTTGGGG------SSEECEEECTTCC-------------------------------CHHHHHH-------
T ss_pred CCCCcccccChhhhhh------hhhhhhhhccccc-------------------------------cChhhHH-------
Confidence 4444333222222222 3333333333221 1100000
Q ss_pred EEeecccccccccCCCCCceEEEEecCCcccccCccccccccc--ccccccceeEeccC--CCccccCCcCceEecCCCC
Q 038861 705 LVIQSCKQLLVTIQCLPALSELQIKGCKRVVLSSPMDLSSLKS--VLLGEMANEVISGC--PQLLSLVTEDDLELSNCKG 780 (1165)
Q Consensus 705 L~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~l~~--l~~~~l~~~~i~~~--~~l~~l~~L~~L~l~~~~~ 780 (1165)
.++.. -..++|+.|++++| .+....+..|..++. ++.+++++|.+... ..+..+++|++|++++|.+
T Consensus 214 -------~~~~~-l~~~~L~~L~L~~n-~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (680)
T 1ziw_A 214 -------KLCLE-LANTSIRNLSLSNS-QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284 (680)
T ss_dssp -------HHHHH-HTTSCCCEEECTTS-CCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCB
T ss_pred -------HHHHH-hhhccccEEEccCC-cccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCcc
Confidence 00000 01234444454442 223333333333322 33333333333333 2345556666666666666
Q ss_pred ccccchhhcCCCCcceEEEcCCCCcc-----ccC-----CCCCcccccEEEeccCCCCCCChHHHhhcCccccccccccc
Q 038861 781 LTKLPQALLTLSSLRELRISGCASLV-----SFP-----QAALPSQLRTFKIEHCNALESLPEAWMRNSNSSLQSLEIGT 850 (1165)
Q Consensus 781 ~~~~~~~~~~l~~L~~L~l~~~~~l~-----~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~l~~ 850 (1165)
.+..|..+.++++|+.|++++|.... .+| ....+++|++|++++|.+....+..+
T Consensus 285 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--------------- 349 (680)
T 1ziw_A 285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF--------------- 349 (680)
T ss_dssp SEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTT---------------
T ss_pred CccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHh---------------
Confidence 66666666666677777666553221 111 12234566666666665444333222
Q ss_pred eeecccccccCCchhhhcCCCCCcceEEEeCCCC-Cccccc--cC--CccccceEeeccCcCcccccCCcCccccCCCCc
Q 038861 851 IEIEECNALESLPEAWMQDSSTSLESLNIDGCDS-LTYIAR--IQ--LPPSLRRLIISDCYNLRTLTGDQGICSSRSGRT 925 (1165)
Q Consensus 851 ~~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~-l~~~~~--~~--~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 925 (1165)
..+++|++|++++|.. ...++. +. ..++|+.|++++|... .
T Consensus 350 ------------------~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~-~--------------- 395 (680)
T 1ziw_A 350 ------------------TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS-K--------------- 395 (680)
T ss_dssp ------------------TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCC-E---------------
T ss_pred ------------------ccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCC-e---------------
Confidence 1133444444443321 111110 00 0123444444333210 0
Q ss_pred cccccCCCCcccccccceeecccccccccccCCCCCCCccEEEEcCCCCchhhh-hhccc-CccceeeeecccccccCCc
Q 038861 926 SLTSFSSENELPATLEQLEVRFCSNLAFLSRNGNLPQALKYLEVSYCSKLESLA-ERLDN-TSLEVIAISYLENLKSLPA 1003 (1165)
Q Consensus 926 ~l~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~-~~L~~L~L~~n~~~~~~p~ 1003 (1165)
..|..+ ...++|+.|++++|.+.+.++ ..+.. ++|++|++++|.+.+..+.
T Consensus 396 ---------~~~~~~------------------~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 448 (680)
T 1ziw_A 396 ---------IESDAF------------------SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN 448 (680)
T ss_dssp ---------ECTTTT------------------TTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTT
T ss_pred ---------EChhhh------------------hCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChh
Confidence 000011 111345666666665544443 22222 5666666666666555555
Q ss_pred ccCCCCCCCEEEEeCCCCC--ccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCC------
Q 038861 1004 GLHNLHHLQELKVYGCPNL--ESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPE------ 1075 (1165)
Q Consensus 1004 ~~~~l~~L~~L~L~~n~~~--~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~------ 1075 (1165)
.+..+++|++|++++|.+. +..|..+..+++|+.|++++|.+.+..+..|.++++|++|++++|++.+..+.
T Consensus 449 ~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 528 (680)
T 1ziw_A 449 SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP 528 (680)
T ss_dssp TTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSC
T ss_pred hhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCc
Confidence 6666666666666666543 34555566666666666666666655555566666666666666665332110
Q ss_pred ---CCCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCCCCcccCCCC--CCcccEEEecCCCCcccH-HHhhh-
Q 038861 1076 ---DGFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCPVLLSSPWF--PASLTVLHISYMPNLESL-SLIVE- 1148 (1165)
Q Consensus 1076 ---~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~~~~l~~l-~~~~~- 1148 (1165)
...+++|+.|++++|++.. ++...|.++++|+.|++++|....+....+ .++|+.|++++|. ++.+ +..+.
T Consensus 529 ~~~~~~l~~L~~L~L~~N~l~~-i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~ 606 (680)
T 1ziw_A 529 IYFLKGLSHLHILNLESNGFDE-IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL-ITSVEKKVFGP 606 (680)
T ss_dssp CCTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC-CCBCCHHHHHH
T ss_pred chhhcCCCCCCEEECCCCCCCC-CCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCc-CCccChhHhcc
Confidence 1345666666666666653 344445666666666666665554444332 2566666666643 3333 23333
Q ss_pred cCCccceEeecCCC
Q 038861 1149 NLTSLEILILCKCP 1162 (1165)
Q Consensus 1149 ~l~~L~~L~l~~c~ 1162 (1165)
.+++|+.|++++||
T Consensus 607 ~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 607 AFRNLTELDMRFNP 620 (680)
T ss_dssp HHTTCSEEECTTCC
T ss_pred cccccCEEEccCCC
Confidence 45666666666655
No 4
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.7e-43 Score=414.82 Aligned_cols=316 Identities=16% Similarity=0.225 Sum_probs=251.5
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhC--CcchhccCCceEEEEEcCCC--CHHHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYK--DDRVRRHFEIKAWTFVSEDF--DVFRVTKSI 76 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~--~~~~~~~f~~~~w~~~~~~~--~~~~~~~~i 76 (1165)
|||++++++|.++|.... +..+++|+|+||||+||||||+++|+ +.+++.+|+.++|+++++.. ++..++..+
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 699999999999997542 23579999999999999999999997 56888999999999999875 789999999
Q ss_pred HHhccCCCC-------CCCCHHHHHHHHHHHhcCc-eEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCchHHHH
Q 038861 77 LMSISNVTV-------NDNDLNSLQEKLEKELIKK-KFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRVVAE 148 (1165)
Q Consensus 77 ~~~l~~~~~-------~~~~~~~~~~~l~~~l~~~-~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~~~~ 148 (1165)
+.+++.... ...+.+.+...+++.++++ |+||||||||+.....|.. .+||+||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHH
Confidence 999876421 2234566788999999996 9999999998854333332 27999999999999987
Q ss_pred hhc-ccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHhhhcCCCChhHHHHHHhcc
Q 038861 149 RVG-SVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLGGLLRGKHDPKDWEIVLNAD 227 (1165)
Q Consensus 149 ~~~-~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~~~~~ 227 (1165)
.++ ....|++++|+++||+++|.+++++.. .++...+++++|+++|+|+||||+++|+.++.+ . -.|...+...
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHH
Confidence 765 336799999999999999999987653 246778899999999999999999999999765 2 2232333322
Q ss_pred ccccCCCCCChhHHHHhccccCcHHHHhHhh-----------hhcCCCCCCccChHHHHHHHHHc--CCcccccCcccHH
Q 038861 228 VWDFADDGCDIIPALKVSYRFLPPQLKQCFA-----------YCSLFPKDYEFEEEEIILLWTAE--GFLDQECDGRKME 294 (1165)
Q Consensus 228 ~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl-----------~la~f~~~~~i~~~~l~~~w~~~--~~~~~~~~~~~~~ 294 (1165)
.+.. ....+.+++.+||+.||++.|.||+ |||+||+++.|+ +..|+++ ||+.....+...+
T Consensus 355 l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 355 LESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred hhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 2221 2346888899999999999999999 999999999998 8899999 9997765456677
Q ss_pred HHHHHHHHHHHHcCccccccC-CCCeEEEehHHHHHHHHhccccEE
Q 038861 295 ELGREFVRELHSRSLFHQSSK-DASRFVMHSLINDLARWAAGEIYF 339 (1165)
Q Consensus 295 ~~~~~~l~~L~~~~li~~~~~-~~~~~~~H~li~~~~~~~~~~~~~ 339 (1165)
++++ ++++|++++|++.... ...+|+|||++|+||+.++.+++.
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 7777 9999999999987543 356899999999999998876553
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.5e-40 Score=407.51 Aligned_cols=554 Identities=16% Similarity=0.087 Sum_probs=344.9
Q ss_pred eeeccCccccccccc-cccCcccccccccCCCCcccc-CcccccCCCccEEeccCcchhccccccccCCCCcceeeccCC
Q 038861 391 VFSLWGYCNIFNLPN-EIGNLRHLRFLNLSGTNIQIL-PESINSLYNLHTILLEDCRRLKKLCNDMGNLTKLHHLRNSNV 468 (1165)
Q Consensus 391 ~l~l~~~~~l~~lp~-~~~~l~~Lr~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~ 468 (1165)
+|+++++ .+..+|. .|+++++|++|+|++|.+..+ |..++++++|++|++++|......+..|+++++|++|++++|
T Consensus 29 ~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n 107 (680)
T 1ziw_A 29 VLNLTHN-QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 107 (680)
T ss_dssp EEECCSS-CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred EEECCCC-CCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCC
Confidence 6788888 7888875 599999999999999999966 667899999999999998655444446999999999999999
Q ss_pred CCCCCCCCCcccccccceeceEEeccccCCCccccCCccccccceeeccccCCCchhhhhHhhcCCCcCccceEeeeccc
Q 038861 469 HSLGEMPKGFGKLTCLLTLGRFVVGKVSGSGLRELKSLTHLQETLRISKLENVKDVCDACEAQLNNKVNLKALLLEWSIW 548 (1165)
Q Consensus 469 ~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 548 (1165)
.+....|..++++++|++|..
T Consensus 108 ~l~~~~~~~~~~l~~L~~L~L----------------------------------------------------------- 128 (680)
T 1ziw_A 108 SIQKIKNNPFVKQKNLITLDL----------------------------------------------------------- 128 (680)
T ss_dssp CCCCCCSCTTTTCTTCCEEEC-----------------------------------------------------------
T ss_pred ccCccChhHccccCCCCEEEC-----------------------------------------------------------
Confidence 855444567888888888832
Q ss_pred cccCccchhhHHhhhccCCCCcCcceEEEEeeCCCCCCcC-cCCCCCCceeEEeEcccCCCCCCC-CCCCCCCCceeeec
Q 038861 549 HVRNLDQCEFETRVLSMLKPYQDVQELTITGYGGPKFPIW-LGDSSFSKLVRLKFEHCGTSTSLP-SVGQLPFLKELVIS 626 (1165)
Q Consensus 549 ~~~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~ 626 (1165)
..+.+....+..+..+++|+.|++.+|.+..++.. +....+++|+.|++++|.+....| .+..+++|+.|++.
T Consensus 129 -----s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 203 (680)
T 1ziw_A 129 -----SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203 (680)
T ss_dssp -----CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECT
T ss_pred -----CCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcc
Confidence 12222222333455567777777777766665542 211124677788888777766555 46677777777777
Q ss_pred CCCCceEeCccccCCCCccCCCCcceeeccccccccccccCCCCCcccCcC--CccceeeecCCcccccCCCccccccce
Q 038861 627 GMGRVKSVGSEFYGSSCSVPFPSLETLYFANMQEWEEWIPFGSGQEVDEVF--PKLRKLSLFSCSKLQGALPKRLLLLER 704 (1165)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~--~~L~~L~l~~c~~l~~~~p~~l~~L~~ 704 (1165)
++.........+... ...++|+.|+++++. +.+..+..+ ..+ ++|+.|++++ +++++..|.
T Consensus 204 ~~~l~~~~~~~~~~~---l~~~~L~~L~L~~n~-l~~~~~~~~-----~~l~~~~L~~L~Ls~-n~l~~~~~~------- 266 (680)
T 1ziw_A 204 NVQLGPSLTEKLCLE---LANTSIRNLSLSNSQ-LSTTSNTTF-----LGLKWTNLTMLDLSY-NNLNVVGND------- 266 (680)
T ss_dssp TCCCHHHHHHHHHHH---HTTSCCCEEECTTSC-CCEECTTTT-----GGGGGSCCCEEECTT-SCCCEECTT-------
T ss_pred ccccChhhHHHHHHH---hhhccccEEEccCCc-ccccChhHh-----hccCcCCCCEEECCC-CCcCccCcc-------
Confidence 664332111111000 013566666666642 222222111 112 3367777766 344433332
Q ss_pred EEeecccccccccCCCCCceEEEEecCCcccccCcccccccccccccccceeEec------cCC-----CccccCCcCce
Q 038861 705 LVIQSCKQLLVTIQCLPALSELQIKGCKRVVLSSPMDLSSLKSVLLGEMANEVIS------GCP-----QLLSLVTEDDL 773 (1165)
Q Consensus 705 L~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~~~l~~~~i~------~~~-----~l~~l~~L~~L 773 (1165)
.+..+++|+.|++++| .+....+..|..++.++.+++.++... .++ .+..+++|++|
T Consensus 267 -----------~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L 334 (680)
T 1ziw_A 267 -----------SFAWLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334 (680)
T ss_dssp -----------TTTTCTTCCEEECCSC-CBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEE
T ss_pred -----------cccCcccccEeeCCCC-ccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEE
Confidence 3444555666666553 334444445555555555555443222 222 45567788888
Q ss_pred EecCCCCccccchhhcCCCCcceEEEcCCCCc-cccCCCCC----cccccEEEeccCCCCCCChHHHhhcCccccccccc
Q 038861 774 ELSNCKGLTKLPQALLTLSSLRELRISGCASL-VSFPQAAL----PSQLRTFKIEHCNALESLPEAWMRNSNSSLQSLEI 848 (1165)
Q Consensus 774 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l-~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~l 848 (1165)
++++|.+.+..+..|.++++|++|++++|... ..++...+ .++|+.|++++|.+....+..+
T Consensus 335 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~------------- 401 (680)
T 1ziw_A 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF------------- 401 (680)
T ss_dssp ECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTT-------------
T ss_pred ECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhh-------------
Confidence 88888887777777888888888888887532 22222222 2567777777777554444322
Q ss_pred cceeecccccccCCchhhhcCCCCCcceEEEeCCCCCcccc--ccCCccccceEeeccCcCcccccCCcCccccCCCCcc
Q 038861 849 GTIEIEECNALESLPEAWMQDSSTSLESLNIDGCDSLTYIA--RIQLPPSLRRLIISDCYNLRTLTGDQGICSSRSGRTS 926 (1165)
Q Consensus 849 ~~~~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 926 (1165)
..+++|+.|++++|.....++ .+..+++|++|++++|.. ..+...
T Consensus 402 --------------------~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~------------ 448 (680)
T 1ziw_A 402 --------------------SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY-LQLTRN------------ 448 (680)
T ss_dssp --------------------TTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSE-EECCTT------------
T ss_pred --------------------hCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCc-ceeChh------------
Confidence 235677777777766543332 455666777777776641 111100
Q ss_pred ccccCCCCcccccccceeecccccccccccCCCCCCCccEEEEcCCCCc--hhhhhhccc-CccceeeeecccccccCCc
Q 038861 927 LTSFSSENELPATLEQLEVRFCSNLAFLSRNGNLPQALKYLEVSYCSKL--ESLAERLDN-TSLEVIAISYLENLKSLPA 1003 (1165)
Q Consensus 927 l~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~-~~L~~L~L~~n~~~~~~p~ 1003 (1165)
.+ ...++|+.|++++|... +..|..+.. ++|++|++++|.+.+..+.
T Consensus 449 ------------~~------------------~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~ 498 (680)
T 1ziw_A 449 ------------SF------------------ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498 (680)
T ss_dssp ------------TT------------------TTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ------------hh------------------hcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChh
Confidence 00 01145777777776543 344444444 7778888888777766666
Q ss_pred ccCCCCCCCEEEEeCCCCCcccc--------CCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCC
Q 038861 1004 GLHNLHHLQELKVYGCPNLESFP--------EGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPE 1075 (1165)
Q Consensus 1004 ~~~~l~~L~~L~L~~n~~~~~~~--------~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~ 1075 (1165)
.+.++++|++|++++|.+.+..+ ..+..+++|+.|++++|.+....+..|.++++|+.|++++|++.+..+.
T Consensus 499 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 578 (680)
T 1ziw_A 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578 (680)
T ss_dssp TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHh
Confidence 77778888888888887665422 2256677888888888877755455677888888888888877533333
Q ss_pred C-CCCCCcceEEEecCCCCCcccccccc-cCCCCcEEEEecC
Q 038861 1076 D-GFPTNLESLEVHDLKISKPLFEWGLN-KFSSLRELQITGG 1115 (1165)
Q Consensus 1076 ~-~~~~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n 1115 (1165)
. ..+++|+.|++++|++.+.. +..+. .+++|+.|++++|
T Consensus 579 ~~~~l~~L~~L~L~~N~l~~~~-~~~~~~~~~~L~~l~l~~N 619 (680)
T 1ziw_A 579 VFNNQVSLKSLNLQKNLITSVE-KKVFGPAFRNLTELDMRFN 619 (680)
T ss_dssp TTTTCTTCCEEECTTSCCCBCC-HHHHHHHHTTCSEEECTTC
T ss_pred HhCCCCCCCEEECCCCcCCccC-hhHhcccccccCEEEccCC
Confidence 2 56778888888888877643 33355 6777888888776
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.1e-39 Score=396.32 Aligned_cols=525 Identities=14% Similarity=0.104 Sum_probs=312.9
Q ss_pred eeeccCccccccccccccCcccccccccCCCCcccc-CcccccCCCccEEeccCcchhccccccccCCCCcceeeccCCC
Q 038861 391 VFSLWGYCNIFNLPNEIGNLRHLRFLNLSGTNIQIL-PESINSLYNLHTILLEDCRRLKKLCNDMGNLTKLHHLRNSNVH 469 (1165)
Q Consensus 391 ~l~l~~~~~l~~lp~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 469 (1165)
.+++.+. .++.+|..+. .++++|+|++|.|+.+ |..|+++++|++|++++|......|.+|+++++|++|++++|.
T Consensus 16 ~~~c~~~-~l~~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 16 TYNCENL-GLNEIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EEECTTS-CCSSCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEECCCC-CcccCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 4556665 7888998875 4799999999999977 6689999999999999998888889999999999999999999
Q ss_pred CCCCCCCCcccccccceeceEEeccccCCCccccCCccccccceeeccccCCCchhhhhHhhcCCCcCccceEeeecccc
Q 038861 470 SLGEMPKGFGKLTCLLTLGRFVVGKVSGSGLRELKSLTHLQETLRISKLENVKDVCDACEAQLNNKVNLKALLLEWSIWH 549 (1165)
Q Consensus 470 ~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 549 (1165)
+....|..++.+++|++|.
T Consensus 93 l~~~~~~~~~~l~~L~~L~------------------------------------------------------------- 111 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLF------------------------------------------------------------- 111 (606)
T ss_dssp CSEECTTTTSSCTTCCEEE-------------------------------------------------------------
T ss_pred ccccChhhhcccccccEee-------------------------------------------------------------
Confidence 6666677788888777772
Q ss_pred ccCccchhhHHhhhccCCCCcCcceEEEEeeCCCCC--CcCcCCCCCCceeEEeEcccCCCCCCC-CCCCCCCCc--eee
Q 038861 550 VRNLDQCEFETRVLSMLKPYQDVQELTITGYGGPKF--PIWLGDSSFSKLVRLKFEHCGTSTSLP-SVGQLPFLK--ELV 624 (1165)
Q Consensus 550 ~~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~--~L~ 624 (1165)
+..+.+....+..+..+++|+.|++++|.+..+ |... .+++|+.|++++|.+....+ .++.+++|+ .|+
T Consensus 112 ---L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~ 185 (606)
T 3t6q_A 112 ---FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF---PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN 185 (606)
T ss_dssp ---CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTC---CCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEE
T ss_pred ---ccccCcccCCcchhccCCcccEEECCCCcccccCccccc---CCcccCEEEcccCcccccChhhhhhhcccceeEEe
Confidence 222222222233445555666666666555544 2222 14555555555555544333 244555555 455
Q ss_pred ecCCCCceEeCccccCCCCccCCCCcceeeccccccccccccCCCCCcccCcCCccceeeecCCcccccCCCccccccce
Q 038861 625 ISGMGRVKSVGSEFYGSSCSVPFPSLETLYFANMQEWEEWIPFGSGQEVDEVFPKLRKLSLFSCSKLQGALPKRLLLLER 704 (1165)
Q Consensus 625 l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~ 704 (1165)
+++|......+..+. ..+|+.|++.+|..+. .
T Consensus 186 l~~n~l~~~~~~~~~-------------------------------------~~~L~~L~l~~~~~~~----~------- 217 (606)
T 3t6q_A 186 LNGNDIAGIEPGAFD-------------------------------------SAVFQSLNFGGTQNLL----V------- 217 (606)
T ss_dssp CTTCCCCEECTTTTT-------------------------------------TCEEEEEECTTCSCHH----H-------
T ss_pred cCCCccCccChhHhh-------------------------------------hccccccccCCchhHH----H-------
Confidence 555543333322221 2344445544433211 1
Q ss_pred EEeecccccccccCCCCCce--EEEEecCCccc--ccCcccccccccccccccceeEeccCCCccccCCcCceEecCCCC
Q 038861 705 LVIQSCKQLLVTIQCLPALS--ELQIKGCKRVV--LSSPMDLSSLKSVLLGEMANEVISGCPQLLSLVTEDDLELSNCKG 780 (1165)
Q Consensus 705 L~~~~~~~~~~~~~~l~~L~--~L~l~~~~~l~--~~~~~~~~~l~~l~~~~l~~~~i~~~~~l~~l~~L~~L~l~~~~~ 780 (1165)
.+..+..+. .+.+..+.... ...+..+..+. . ..++.|++++|.+
T Consensus 218 -----------~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~-------------------~-~~L~~L~l~~n~l 266 (606)
T 3t6q_A 218 -----------IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC-------------------E-MSVESINLQKHYF 266 (606)
T ss_dssp -----------HHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGG-------------------G-SEEEEEECTTCCC
T ss_pred -----------HhhhccccchhheechhhccccccccChhHhchhh-------------------c-CceeEEEeecCcc
Confidence 111111111 11111111000 00001111110 0 1455666666666
Q ss_pred ccccchhhcCCCCcceEEEcCCCCccccC-CCCCcccccEEEeccCCCCCCChHHHhhcCccccccccccceeecccccc
Q 038861 781 LTKLPQALLTLSSLRELRISGCASLVSFP-QAALPSQLRTFKIEHCNALESLPEAWMRNSNSSLQSLEIGTIEIEECNAL 859 (1165)
Q Consensus 781 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~l 859 (1165)
.+..+..|..+++|++|++++|... .+| ....+++|++|++++|.+....+..+
T Consensus 267 ~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~------------------------ 321 (606)
T 3t6q_A 267 FNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISA------------------------ 321 (606)
T ss_dssp SSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCG------------------------
T ss_pred CccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhh------------------------
Confidence 6555556677777777777777443 333 23345677777777776443333211
Q ss_pred cCCchhhhcCCCCCcceEEEeCCCCCcccc--ccCCccccceEeeccCcCcccccCCcCccccCCCCccccccCCCCccc
Q 038861 860 ESLPEAWMQDSSTSLESLNIDGCDSLTYIA--RIQLPPSLRRLIISDCYNLRTLTGDQGICSSRSGRTSLTSFSSENELP 937 (1165)
Q Consensus 860 ~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 937 (1165)
..+++|++|++++|.....++ .+..+++|++|++++|... .+. ..+
T Consensus 322 ---------~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~----------------------~~~ 369 (606)
T 3t6q_A 322 ---------SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE-TSD----------------------CCN 369 (606)
T ss_dssp ---------GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCC-EEE----------------------EST
T ss_pred ---------hccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccc-ccc----------------------Ccc
Confidence 124566666666665443332 2455566666666665311 000 000
Q ss_pred ccccceeecccccccccccCCCCCCCccEEEEcCCCCchhhhhhccc-CccceeeeecccccccCCc-ccCCCCCCCEEE
Q 038861 938 ATLEQLEVRFCSNLAFLSRNGNLPQALKYLEVSYCSKLESLAERLDN-TSLEVIAISYLENLKSLPA-GLHNLHHLQELK 1015 (1165)
Q Consensus 938 ~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~n~~~~~~p~-~~~~l~~L~~L~ 1015 (1165)
..+. -.++|+.|++++|...+..+..+.. ++|++|++++|.+.+..|. .+.++++|++|+
T Consensus 370 ~~~~------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 370 LQLR------------------NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp TTTT------------------TCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred hhcc------------------cCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 0011 1145777777777666555555544 7778888888777766544 377788888888
Q ss_pred EeCCCCCccccCCCCCCCCcCeEEeecCCCCCc---CCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceEEEecCC
Q 038861 1016 VYGCPNLESFPEGGLPSTKLTKLTIGYCENLKA---LPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESLEVHDLK 1091 (1165)
Q Consensus 1016 L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~---~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~n~ 1091 (1165)
+++|.+.+..|..+..+++|++|++++|.+.+. .+..+..+++|+.|++++|++.+..|.. ..+++|+.|++++|+
T Consensus 432 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp CTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence 888887777777777788888888888877652 2345777888888888888876665555 677888888888888
Q ss_pred CCCcccccccccCCCCcEEEEecCCCCcccCCCC--CCcccEEEecCCCCcc
Q 038861 1092 ISKPLFEWGLNKFSSLRELQITGGCPVLLSSPWF--PASLTVLHISYMPNLE 1141 (1165)
Q Consensus 1092 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~~~~l~ 1141 (1165)
+.+..+. .+.++++| .|++++|....+....+ .++|+.|++++||...
T Consensus 512 l~~~~~~-~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 512 LTSSSIE-ALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp CCGGGGG-GGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred cCcCChh-HhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 7765443 47777888 88888776654433221 3567777777776543
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1e-39 Score=396.44 Aligned_cols=530 Identities=15% Similarity=0.090 Sum_probs=294.7
Q ss_pred eeeccCccccccccccccCcccccccccCCCCccccCc-ccccCCCccEEeccCcchhccccccccCCCCcceeeccCCC
Q 038861 391 VFSLWGYCNIFNLPNEIGNLRHLRFLNLSGTNIQILPE-SINSLYNLHTILLEDCRRLKKLCNDMGNLTKLHHLRNSNVH 469 (1165)
Q Consensus 391 ~l~l~~~~~l~~lp~~~~~l~~Lr~L~L~~~~i~~lp~-~~~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 469 (1165)
.+++.+. +++.+|..+. .+|++|+|++|.++.+|. .|.++++|++|++++|......|..|.++++|++|++++|.
T Consensus 15 ~~~c~~~-~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 15 TYQCMDQ-KLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp EEECTTS-CCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred ceEccCC-CcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc
Confidence 4566666 7888888764 789999999999997755 78899999999999987777778889999999999999998
Q ss_pred CCCCCCCCcccccccceeceEEeccccCCCccccCCccccccceeeccccCCCchhhhhHhhcCCCcCccceEeeecccc
Q 038861 470 SLGEMPKGFGKLTCLLTLGRFVVGKVSGSGLRELKSLTHLQETLRISKLENVKDVCDACEAQLNNKVNLKALLLEWSIWH 549 (1165)
Q Consensus 470 ~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 549 (1165)
+....|..|+++++|++|.
T Consensus 92 l~~~~p~~~~~l~~L~~L~------------------------------------------------------------- 110 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLV------------------------------------------------------------- 110 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEE-------------------------------------------------------------
T ss_pred ccccChhhcCCcccCCEEE-------------------------------------------------------------
Confidence 6566688888888888883
Q ss_pred ccCccchhhHHhhhccCCCCcCcceEEEEeeCCC--CCCcCcCCCCCCceeEEeEcccCCCCCCC-CCCCCCCCc----e
Q 038861 550 VRNLDQCEFETRVLSMLKPYQDVQELTITGYGGP--KFPIWLGDSSFSKLVRLKFEHCGTSTSLP-SVGQLPFLK----E 622 (1165)
Q Consensus 550 ~~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~----~ 622 (1165)
+..+.+....+..+..+++|+.|++++|... .+|..+.. +++|+.|++++|.+....+ .++.+++|+ .
T Consensus 111 ---L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~ 185 (606)
T 3vq2_A 111 ---AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN--LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185 (606)
T ss_dssp ---CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGT--CTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCE
T ss_pred ---ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhh--cCCCCEEEccCCcceecChhhhhhhhccccccce
Confidence 2222222223334566777777888777765 35666654 7788888888887766555 355555443 6
Q ss_pred eeecCCCCceEeCccccCCCCccCCCCcceeeccccccccccccCCCCCcccCcCCccceeeecCCcccccCCCcccccc
Q 038861 623 LVISGMGRVKSVGSEFYGSSCSVPFPSLETLYFANMQEWEEWIPFGSGQEVDEVFPKLRKLSLFSCSKLQGALPKRLLLL 702 (1165)
Q Consensus 623 L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L 702 (1165)
|++++|..... +..... ..+|+.|+++++.......+.. ...++.|+.+.+.. ..+.+.. .+
T Consensus 186 L~l~~n~l~~~-~~~~~~------~~~L~~L~L~~n~~~~~~~~~~-----~~~l~~L~~l~l~~-~~~~~~~-----~l 247 (606)
T 3vq2_A 186 LDMSLNPIDFI-QDQAFQ------GIKLHELTLRGNFNSSNIMKTC-----LQNLAGLHVHRLIL-GEFKDER-----NL 247 (606)
T ss_dssp EECTTCCCCEE-CTTTTT------TCEEEEEEEESCCSCHHHHHHH-----HHTTTTCEEEEEEE-ECCTTSC-----CC
T ss_pred eeccCCCccee-Cccccc------CceeeeeeccCCccchhHHHHH-----hccccccccccccc-cccccCC-----cc
Confidence 78877754433 332222 2367777776653221111111 11245555555432 1111000 00
Q ss_pred ceEEeecccccccccCCCCCceEEEEecCCcccccCcccccccccccccccceeEeccCCCccccCCcCceEecCCCCcc
Q 038861 703 ERLVIQSCKQLLVTIQCLPALSELQIKGCKRVVLSSPMDLSSLKSVLLGEMANEVISGCPQLLSLVTEDDLELSNCKGLT 782 (1165)
Q Consensus 703 ~~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~~~l~~~~i~~~~~l~~l~~L~~L~l~~~~~~~ 782 (1165)
..+.- .....+..+ .++.+++..++.+....+. +..++.++.+++.++.+..++.+..+++|++|++++|.+ +
T Consensus 248 ~~~~~----~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~ 320 (606)
T 3vq2_A 248 EIFEP----SIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-K 320 (606)
T ss_dssp SCCCG----GGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-S
T ss_pred cccCh----HHhhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-c
Confidence 00000 000011111 3556666555555544444 555666666666666666666666666666677766666 5
Q ss_pred ccchhhcCCCCcceEEEcCCCCccccCCCCCcccccEEEeccCCCCCC--ChHHHhhcCccccccccccceeeccccccc
Q 038861 783 KLPQALLTLSSLRELRISGCASLVSFPQAALPSQLRTFKIEHCNALES--LPEAWMRNSNSSLQSLEIGTIEIEECNALE 860 (1165)
Q Consensus 783 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~l~l~~~~l~~~~~l~ 860 (1165)
.+| .+ .+++|+.|++++|...... ....+++|++|++++|.+... ++..+
T Consensus 321 ~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~------------------------- 372 (606)
T 3vq2_A 321 QFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSD------------------------- 372 (606)
T ss_dssp SCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHH-------------------------
T ss_pred ccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhh-------------------------
Confidence 555 33 6666677777666544433 233456666666666653322 12111
Q ss_pred CCchhhhcCCCCCcceEEEeCCCCCccccccCCccccceEeeccCcCcccccCCcCccccCCCCccccccCCCCcccccc
Q 038861 861 SLPEAWMQDSSTSLESLNIDGCDSLTYIARIQLPPSLRRLIISDCYNLRTLTGDQGICSSRSGRTSLTSFSSENELPATL 940 (1165)
Q Consensus 861 ~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 940 (1165)
..+++|++|++++|........+..+++|++|++++|......+. ..+
T Consensus 373 --------~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------------------~~~ 420 (606)
T 3vq2_A 373 --------LGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEF------------------------SAF 420 (606)
T ss_dssp --------HCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTT------------------------TTT
T ss_pred --------ccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccCh------------------------hhh
Confidence 225566666666665333223444455555555555531111000 000
Q ss_pred cceeecccccccccccCCCCCCCccEEEEcCCCCchhhhhhccc-Cccceeeeecccccc-cCCcccCCCCCCCEEEEeC
Q 038861 941 EQLEVRFCSNLAFLSRNGNLPQALKYLEVSYCSKLESLAERLDN-TSLEVIAISYLENLK-SLPAGLHNLHHLQELKVYG 1018 (1165)
Q Consensus 941 ~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~ 1018 (1165)
.. .++|+.|++++|...+..|..+.. ++|++|++++|.+.+ .+|..+.++++|++|++++
T Consensus 421 ~~------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 482 (606)
T 3vq2_A 421 LS------------------LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482 (606)
T ss_dssp TT------------------CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred hc------------------cccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCC
Confidence 00 134555555555544444443333 555555555555544 2455555555555555555
Q ss_pred CCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCCC-CcceEEEecCCCC
Q 038861 1019 CPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPT-NLESLEVHDLKIS 1093 (1165)
Q Consensus 1019 n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~-~L~~L~l~~n~~~ 1093 (1165)
|.+.+..|..+..+++|++|++++|.+.+..|..|.++++|+.|++++|++. .+|.. ..++ +|+.|++++|++.
T Consensus 483 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCC
T ss_pred CcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcc
Confidence 5555555555555555555555555555555555555555555555555552 34433 2332 4555555555554
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.5e-38 Score=384.16 Aligned_cols=523 Identities=15% Similarity=0.076 Sum_probs=272.7
Q ss_pred cccccccCCCCccccCcccccCCCccEEeccCcchhccccccccCCCCcceeeccCCCCCCCCCCCcccccccceeceEE
Q 038861 412 HLRFLNLSGTNIQILPESINSLYNLHTILLEDCRRLKKLCNDMGNLTKLHHLRNSNVHSLGEMPKGFGKLTCLLTLGRFV 491 (1165)
Q Consensus 412 ~Lr~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~ 491 (1165)
..++++.+++.++.+|..+. .+|++|++++|......|..|.++++|++|++++|.+....|..|+++++|++|.
T Consensus 12 ~~~~~~c~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~--- 86 (606)
T 3vq2_A 12 PNITYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLI--- 86 (606)
T ss_dssp TTTEEECTTSCCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE---
T ss_pred CCCceEccCCCcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeE---
Confidence 34678999999999999776 8999999999888777777999999999999999985555566788888887772
Q ss_pred eccccCCCccccCCccccccceeeccccCCCchhhhhHhhcCCCcCccceEeeeccccccCccchhhHHhhhccCCCCcC
Q 038861 492 VGKVSGSGLRELKSLTHLQETLRISKLENVKDVCDACEAQLNNKVNLKALLLEWSIWHVRNLDQCEFETRVLSMLKPYQD 571 (1165)
Q Consensus 492 ~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 571 (1165)
+..+.+....+..+..+++
T Consensus 87 -------------------------------------------------------------Ls~n~l~~~~p~~~~~l~~ 105 (606)
T 3vq2_A 87 -------------------------------------------------------------LTGNPIQSFSPGSFSGLTS 105 (606)
T ss_dssp -------------------------------------------------------------CTTCCCCCCCTTSSTTCTT
T ss_pred -------------------------------------------------------------CCCCcccccChhhcCCccc
Confidence 3333333334556677778
Q ss_pred cceEEEEeeCCCCCCc-CcCCCCCCceeEEeEcccCCCC-CCC-CCCCCCCCceeeecCCCCceEeCccccCCCCccCCC
Q 038861 572 VQELTITGYGGPKFPI-WLGDSSFSKLVRLKFEHCGTST-SLP-SVGQLPFLKELVISGMGRVKSVGSEFYGSSCSVPFP 648 (1165)
Q Consensus 572 L~~L~l~~~~~~~~p~-~~~~~~~~~L~~L~L~~~~~~~-~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 648 (1165)
|+.|++++|.+..++. .+. .+++|+.|++++|.+.. .+| .++++++|++|++++|......+..+.. ++
T Consensus 106 L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~ 177 (606)
T 3vq2_A 106 LENLVAVETKLASLESFPIG--QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF------LR 177 (606)
T ss_dssp CCEEECTTSCCCCSSSSCCT--TCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHH------HH
T ss_pred CCEEEccCCccccccccccC--CCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhh------hh
Confidence 8888888887776663 333 47778888888887764 445 4777888888888877655544443332 23
Q ss_pred Ccc----eeeccccccccccccCCCCCcccCcCCccceeeecCCcccccCCCccccccceEEeecccccccccCCCCCce
Q 038861 649 SLE----TLYFANMQEWEEWIPFGSGQEVDEVFPKLRKLSLFSCSKLQGALPKRLLLLERLVIQSCKQLLVTIQCLPALS 724 (1165)
Q Consensus 649 ~L~----~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~~~~~~~~~~~~~l~~L~ 724 (1165)
+|+ +|+++++. +....+... ...+|+.|++++| .+++ ...+..+..++.++
T Consensus 178 ~L~~~l~~L~l~~n~-l~~~~~~~~------~~~~L~~L~L~~n-~~~~-----------------~~~~~~~~~l~~L~ 232 (606)
T 3vq2_A 178 ENPQVNLSLDMSLNP-IDFIQDQAF------QGIKLHELTLRGN-FNSS-----------------NIMKTCLQNLAGLH 232 (606)
T ss_dssp HCTTCCCEEECTTCC-CCEECTTTT------TTCEEEEEEEESC-CSCH-----------------HHHHHHHHTTTTCE
T ss_pred ccccccceeeccCCC-cceeCcccc------cCceeeeeeccCC-ccch-----------------hHHHHHhccccccc
Confidence 322 45555432 121111110 1124555555542 2211 01123455666666
Q ss_pred EEEEecCCc-----ccccCcccccccccccccccceeEeccCCCccccCCcCceEe-cCCCCccccchhhcCCCCcceEE
Q 038861 725 ELQIKGCKR-----VVLSSPMDLSSLKSVLLGEMANEVISGCPQLLSLVTEDDLEL-SNCKGLTKLPQALLTLSSLRELR 798 (1165)
Q Consensus 725 ~L~l~~~~~-----l~~~~~~~~~~l~~l~~~~l~~~~i~~~~~l~~l~~L~~L~l-~~~~~~~~~~~~~~~l~~L~~L~ 798 (1165)
.+++..... +....+..+. .+..+ .++.+++ ..+...+..|. +..+++|+.|+
T Consensus 233 ~l~l~~~~~~~~~~l~~~~~~~~~-------------------~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~ 291 (606)
T 3vq2_A 233 VHRLILGEFKDERNLEIFEPSIME-------------------GLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMS 291 (606)
T ss_dssp EEEEEEECCTTSCCCSCCCGGGGT-------------------TGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEE
T ss_pred cccccccccccCCcccccChHHhh-------------------hhhhc-cHhheeccccccccccccc-cccCCCCCEEE
Confidence 666543211 0000011111 11111 2344555 34444445554 67777777777
Q ss_pred EcCCCCccccCCCCCcccccEEEeccCCCCCCChHHHhhcCccccccccccceeecccccccCCchhhhcCCCCCcceEE
Q 038861 799 ISGCASLVSFPQAALPSQLRTFKIEHCNALESLPEAWMRNSNSSLQSLEIGTIEIEECNALESLPEAWMQDSSTSLESLN 878 (1165)
Q Consensus 799 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~l~~l~~~~~~~~l~~L~~L~ 878 (1165)
+++|.. ..++....+++|++|++++|.+ +.+|. + ...+|+.|+++++...... ....+++|++|+
T Consensus 292 l~~~~~-~~l~~l~~~~~L~~L~l~~n~l-~~lp~-~---~l~~L~~L~l~~n~~~~~~---------~~~~l~~L~~L~ 356 (606)
T 3vq2_A 292 LAGVSI-KYLEDVPKHFKWQSLSIIRCQL-KQFPT-L---DLPFLKSLTLTMNKGSISF---------KKVALPSLSYLD 356 (606)
T ss_dssp EESCCC-CCCCCCCTTCCCSEEEEESCCC-SSCCC-C---CCSSCCEEEEESCSSCEEC---------CCCCCTTCCEEE
T ss_pred ecCccc-hhhhhccccccCCEEEcccccC-ccccc-C---CCCccceeeccCCcCccch---------hhccCCCCCEEE
Confidence 777754 4445444556777777777775 44442 1 1122222222222110000 001234444444
Q ss_pred EeCCCCCcc---ccccCCccccceEeeccCcCcccccCCcCccccCCCCccccccCCCCcccccccceeecccccccccc
Q 038861 879 IDGCDSLTY---IARIQLPPSLRRLIISDCYNLRTLTGDQGICSSRSGRTSLTSFSSENELPATLEQLEVRFCSNLAFLS 955 (1165)
Q Consensus 879 l~~~~~l~~---~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~l~~~~ 955 (1165)
+++|..... ...+..+++|++|++++|. +..++ ..+.
T Consensus 357 ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~-------------------------~~~~-------------- 396 (606)
T 3vq2_A 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMS-------------------------ANFM-------------- 396 (606)
T ss_dssp CCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEEC-------------------------CCCT--------------
T ss_pred CcCCccCCCcchhhhhccCCcccEeECCCCc-cccch-------------------------hhcc--------------
Confidence 444432221 1122333444444444442 11110 0000
Q ss_pred cCCCCCCCccEEEEcCCCCchhhh-hhccc-CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCc-cccCCCCCC
Q 038861 956 RNGNLPQALKYLEVSYCSKLESLA-ERLDN-TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLE-SFPEGGLPS 1032 (1165)
Q Consensus 956 ~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~l 1032 (1165)
-.++|+.|++++|.+.+..+ ..+.. ++|++|++++|.+.+..|..+.++++|++|++++|.+.+ .+|..+..+
T Consensus 397 ----~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 472 (606)
T 3vq2_A 397 ----GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT 472 (606)
T ss_dssp ----TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred ----CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccC
Confidence 01335555555554444333 12222 555555555555555455555555555555555555444 244445555
Q ss_pred CCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceEEEecCCCCCcccccccccCC-CCcEE
Q 038861 1033 TKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESLEVHDLKISKPLFEWGLNKFS-SLREL 1110 (1165)
Q Consensus 1033 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~L 1110 (1165)
++|++|++++|.+.+..|..|.++++|++|++++|++.+..|.. ..+++|+.|++++|++.. ++.. +..++ +|++|
T Consensus 473 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~-~~~l~~~L~~l 550 (606)
T 3vq2_A 473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGI-LQHFPKSLAFF 550 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESC-GGGSCTTCCEE
T ss_pred CCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHh-HhhhcccCcEE
Confidence 55555555555555444444555555555555555554443433 444555555555555442 2322 44444 35555
Q ss_pred EEecC
Q 038861 1111 QITGG 1115 (1165)
Q Consensus 1111 ~l~~n 1115 (1165)
++++|
T Consensus 551 ~l~~N 555 (606)
T 3vq2_A 551 NLTNN 555 (606)
T ss_dssp ECCSC
T ss_pred EccCC
Confidence 55544
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3e-38 Score=383.51 Aligned_cols=316 Identities=16% Similarity=0.149 Sum_probs=199.0
Q ss_pred eeeccCccccccc-cccccCcccccccccCCCCcccc-CcccccCCCccEEeccCcchhccccccccCCCCcceeeccCC
Q 038861 391 VFSLWGYCNIFNL-PNEIGNLRHLRFLNLSGTNIQIL-PESINSLYNLHTILLEDCRRLKKLCNDMGNLTKLHHLRNSNV 468 (1165)
Q Consensus 391 ~l~l~~~~~l~~l-p~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~ 468 (1165)
+|+++++ .++.+ |..|+++++|++|+|++|.+..+ |..|+++++|++|++++|......|..|+++++|++|++++|
T Consensus 37 ~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 115 (606)
T 3t6q_A 37 CLEFSFN-VLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115 (606)
T ss_dssp EEECTTC-CCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTS
T ss_pred EEEccCC-ccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecccc
Confidence 7899998 88887 56799999999999999999966 778999999999999999888888999999999999999999
Q ss_pred CCCCCCCCCcccccccceeceEEeccccCCCccccCCccccccceeeccccCCCchhhhhHhhcCCCcCccceEeeeccc
Q 038861 469 HSLGEMPKGFGKLTCLLTLGRFVVGKVSGSGLRELKSLTHLQETLRISKLENVKDVCDACEAQLNNKVNLKALLLEWSIW 548 (1165)
Q Consensus 469 ~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 548 (1165)
.+....|..++.+++|++|.
T Consensus 116 ~i~~l~~~~~~~l~~L~~L~------------------------------------------------------------ 135 (606)
T 3t6q_A 116 GISSIDFIPLHNQKTLESLY------------------------------------------------------------ 135 (606)
T ss_dssp CCSCGGGSCCTTCTTCCEEE------------------------------------------------------------
T ss_pred CcccCCcchhccCCcccEEE------------------------------------------------------------
Confidence 95554467788888888883
Q ss_pred cccCccchhhHHhhhccCCCCcCcceEEEEeeCCCCCCc-CcCCCCCCcee--EEeEcccCCCCCCCCCCCCCCCceeee
Q 038861 549 HVRNLDQCEFETRVLSMLKPYQDVQELTITGYGGPKFPI-WLGDSSFSKLV--RLKFEHCGTSTSLPSVGQLPFLKELVI 625 (1165)
Q Consensus 549 ~~~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~~~~L~--~L~L~~~~~~~~l~~l~~l~~L~~L~l 625 (1165)
+..+.+.....+.+..+++|+.|++++|.+..++. .+. .+++|+ .|++++|.+....|.......|+.|++
T Consensus 136 ----L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l 209 (606)
T 3t6q_A 136 ----LGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS--SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209 (606)
T ss_dssp ----CCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHH--TTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEEC
T ss_pred ----CCCCcccccCcccccCCcccCEEEcccCcccccChhhhh--hhcccceeEEecCCCccCccChhHhhhcccccccc
Confidence 22222222222334447889999999988777643 333 367777 889999998887776556678999999
Q ss_pred cCCCCceEeCccccCCCCccCCCCcceeeccccccccccccCCCCCcccCcC--CccceeeecCCcccccCCCccccccc
Q 038861 626 SGMGRVKSVGSEFYGSSCSVPFPSLETLYFANMQEWEEWIPFGSGQEVDEVF--PKLRKLSLFSCSKLQGALPKRLLLLE 703 (1165)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~--~~L~~L~l~~c~~l~~~~p~~l~~L~ 703 (1165)
++|........... -..++.+.+..+........ .......+ .+|+.|++++ +.+++..+.
T Consensus 210 ~~~~~~~~~~~~l~-------~~~l~~l~~~~~~~~~~~~i---~~~~~~~l~~~~L~~L~l~~-n~l~~~~~~------ 272 (606)
T 3t6q_A 210 GGTQNLLVIFKGLK-------NSTIQSLWLGTFEDMDDEDI---SPAVFEGLCEMSVESINLQK-HYFFNISSN------ 272 (606)
T ss_dssp TTCSCHHHHHHHTT-------TCEEEEEECCCCTTSCCCCC---CGGGGGGGGGSEEEEEECTT-CCCSSCCTT------
T ss_pred CCchhHHHHhhhcc-------ccchhheechhhcccccccc---ChhHhchhhcCceeEEEeec-CccCccCHH------
Confidence 98863322211111 01222222222111110000 00000001 1344444444 233311111
Q ss_pred eEEeecccccccccCCCCCceEEEEecCCcccccCcccccccccccccccceeEeccCC-CccccCCcCceEecCCCCcc
Q 038861 704 RLVIQSCKQLLVTIQCLPALSELQIKGCKRVVLSSPMDLSSLKSVLLGEMANEVISGCP-QLLSLVTEDDLELSNCKGLT 782 (1165)
Q Consensus 704 ~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~~~l~~~~i~~~~-~l~~l~~L~~L~l~~~~~~~ 782 (1165)
.+..+++|+.|++++ |.+..+| .+..+++|++|++++|.+.+
T Consensus 273 ------------~~~~l~~L~~L~l~~-------------------------n~l~~lp~~l~~l~~L~~L~l~~n~l~~ 315 (606)
T 3t6q_A 273 ------------TFHCFSGLQELDLTA-------------------------THLSELPSGLVGLSTLKKLVLSANKFEN 315 (606)
T ss_dssp ------------TTTTCTTCSEEECTT-------------------------SCCSCCCSSCCSCTTCCEEECTTCCCSB
T ss_pred ------------HhccccCCCEEeccC-------------------------CccCCCChhhcccccCCEEECccCCcCc
Confidence 233444444444444 3333332 34556666777777777666
Q ss_pred ccchhhcCCCCcceEEEcCCCCccccCC--CCCcccccEEEeccCCC
Q 038861 783 KLPQALLTLSSLRELRISGCASLVSFPQ--AALPSQLRTFKIEHCNA 827 (1165)
Q Consensus 783 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~ 827 (1165)
..|..+..+++|++|++++|.....++. ...+++|++|++++|.+
T Consensus 316 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 362 (606)
T 3t6q_A 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362 (606)
T ss_dssp GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCC
T ss_pred CchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcc
Confidence 6666677777777777777755444432 23346666666666653
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7.6e-37 Score=382.54 Aligned_cols=520 Identities=16% Similarity=0.083 Sum_probs=303.0
Q ss_pred eeeccCccccccccccccCcccccccccCCCCcccc-CcccccCCCccEEeccCcchhccc-cccccCCCCcceeeccCC
Q 038861 391 VFSLWGYCNIFNLPNEIGNLRHLRFLNLSGTNIQIL-PESINSLYNLHTILLEDCRRLKKL-CNDMGNLTKLHHLRNSNV 468 (1165)
Q Consensus 391 ~l~l~~~~~l~~lp~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~ 468 (1165)
+.+++++ +++.+|. -.++|++|+|++|.|+.+ |.+|.++++|++|+|++|.....+ |.+|.++++|++|++++|
T Consensus 8 ~~dcs~~-~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 8 IAFYRFC-NLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEESCC-CSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEEccCC-CCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 5566666 8899997 468999999999999966 778999999999999998766666 788999999999999999
Q ss_pred CCCCCCCCCcccccccceeceEEeccccCCCccccCCccccccceeeccccCCCchhhhhHhhcCCCcCccceEeeeccc
Q 038861 469 HSLGEMPKGFGKLTCLLTLGRFVVGKVSGSGLRELKSLTHLQETLRISKLENVKDVCDACEAQLNNKVNLKALLLEWSIW 548 (1165)
Q Consensus 469 ~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 548 (1165)
.+....|..++.+++|++|.
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~------------------------------------------------------------ 103 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELR------------------------------------------------------------ 103 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEE------------------------------------------------------------
T ss_pred cCcccCHhHccCCcccCEee------------------------------------------------------------
Confidence 96666688888888888883
Q ss_pred cccCccchhhHHhhhc--cCCCCcCcceEEEEeeCCCCCC--cCcCCCCCCceeEEeEcccCCCCCCC-CCCCC--CCCc
Q 038861 549 HVRNLDQCEFETRVLS--MLKPYQDVQELTITGYGGPKFP--IWLGDSSFSKLVRLKFEHCGTSTSLP-SVGQL--PFLK 621 (1165)
Q Consensus 549 ~~~~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~p--~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l--~~L~ 621 (1165)
+..|.+....+. .+..+++|+.|++++|....++ ..+. .+++|+.|++++|.+....+ .+..+ ++|+
T Consensus 104 ----Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~--~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~ 177 (844)
T 3j0a_A 104 ----LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG--KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS 177 (844)
T ss_dssp ----CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGG--TCSSCCEEEEESSCCCCCCSGGGHHHHHCSSC
T ss_pred ----CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHh--hCCCCCEEECCCCcCCeeCHHHcccccCCccc
Confidence 222222211122 2566777888888877766553 2333 37777888888777766555 35555 6777
Q ss_pred eeeecCCCCceEeCccccCCCCccCCCCcceeeccccccccccccCCCCCcccCcCCccceeeecCCcccccCCCccccc
Q 038861 622 ELVISGMGRVKSVGSEFYGSSCSVPFPSLETLYFANMQEWEEWIPFGSGQEVDEVFPKLRKLSLFSCSKLQGALPKRLLL 701 (1165)
Q Consensus 622 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~ 701 (1165)
.|++++|......+..+.. +++ ......|+.|++++ +.+++..|..+..
T Consensus 178 ~L~L~~n~l~~~~~~~~~~------~~~------------------------~~~~~~L~~L~Ls~-n~l~~~~~~~~~~ 226 (844)
T 3j0a_A 178 FFSLAANSLYSRVSVDWGK------CMN------------------------PFRNMVLEILDVSG-NGWTVDITGNFSN 226 (844)
T ss_dssp CCEECCSBSCCCCCCCCCS------SSC------------------------TTTTCCBSEEBCSS-CCSSTTTTSGGGG
T ss_pred eEECCCCccccccccchhh------cCC------------------------ccccCceeEEecCC-CcCchhHHHHHHh
Confidence 7777777655544433322 111 00011345555554 2333333322211
Q ss_pred cceEEeecccccccccCCCCCceEEEEecCC--------cccccCccccccc--ccccccccceeEeccC--CCccccCC
Q 038861 702 LERLVIQSCKQLLVTIQCLPALSELQIKGCK--------RVVLSSPMDLSSL--KSVLLGEMANEVISGC--PQLLSLVT 769 (1165)
Q Consensus 702 L~~L~~~~~~~~~~~~~~l~~L~~L~l~~~~--------~l~~~~~~~~~~l--~~l~~~~l~~~~i~~~--~~l~~l~~ 769 (1165)
. .....++.+.+..+. .+.......|..+ ..++.+++++|.+... ..+..+++
T Consensus 227 ~---------------l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 291 (844)
T 3j0a_A 227 A---------------ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKD 291 (844)
T ss_dssp T---------------SCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCC
T ss_pred h---------------cCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCC
Confidence 0 001122233322110 0000000111111 1111111111222111 12333444
Q ss_pred cCceEecCCCCccccchhhcCCCCcceEEEcCCCCccccC-CCCCcccccEEEeccCCCCCCChHHHhhcCccccccccc
Q 038861 770 EDDLELSNCKGLTKLPQALLTLSSLRELRISGCASLVSFP-QAALPSQLRTFKIEHCNALESLPEAWMRNSNSSLQSLEI 848 (1165)
Q Consensus 770 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~l 848 (1165)
|+.|++++|.+.+..|..|.++++|++|++++|......+ ....+++|++|++++|.+....+.
T Consensus 292 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~--------------- 356 (844)
T 3j0a_A 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ--------------- 356 (844)
T ss_dssp CCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSS---------------
T ss_pred CCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChh---------------
Confidence 4445555554444444444455555555555543322211 122234455555544442211111
Q ss_pred cceeecccccccCCchhhhcCCCCCcceEEEeCCCCCccccccCCccccceEeeccCcCcccccCCcCccccCCCCcccc
Q 038861 849 GTIEIEECNALESLPEAWMQDSSTSLESLNIDGCDSLTYIARIQLPPSLRRLIISDCYNLRTLTGDQGICSSRSGRTSLT 928 (1165)
Q Consensus 849 ~~~~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~l~ 928 (1165)
.+..+++|++|++++|.... + ..+++|+.|.+++|. +..++
T Consensus 357 ------------------~~~~l~~L~~L~Ls~N~l~~-i---~~~~~L~~L~l~~N~-l~~l~---------------- 397 (844)
T 3j0a_A 357 ------------------TFKFLEKLQTLDLRDNALTT-I---HFIPSIPDIFLSGNK-LVTLP---------------- 397 (844)
T ss_dssp ------------------CSCSCCCCCEEEEETCCSCC-C---SSCCSCSEEEEESCC-CCCCC----------------
T ss_pred ------------------hhcCCCCCCEEECCCCCCCc-c---cCCCCcchhccCCCC-ccccc----------------
Confidence 11336677777777765332 1 225667777777663 11111
Q ss_pred ccCCCCcccccccceeecccccccccccCCCCCCCccEEEEcCCCCchhhh--hhcccCccceeeeecccccccCCc-cc
Q 038861 929 SFSSENELPATLEQLEVRFCSNLAFLSRNGNLPQALKYLEVSYCSKLESLA--ERLDNTSLEVIAISYLENLKSLPA-GL 1005 (1165)
Q Consensus 929 ~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~L~~n~~~~~~p~-~~ 1005 (1165)
....+++.|++++|.+.+.-. .....++|+.|++++|.+.+..+. .+
T Consensus 398 ------------------------------~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 447 (844)
T 3j0a_A 398 ------------------------------KINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447 (844)
T ss_dssp ------------------------------CCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS
T ss_pred ------------------------------ccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc
Confidence 012357778888876544211 112338888888888888665433 35
Q ss_pred CCCCCCCEEEEeCCCCC-----ccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCCCCCC
Q 038861 1006 HNLHHLQELKVYGCPNL-----ESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPEDGFPT 1080 (1165)
Q Consensus 1006 ~~l~~L~~L~L~~n~~~-----~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~ 1080 (1165)
..+++|++|++++|.+. +..+..+..+++|+.|+|++|.+.+..|..|.++++|+.|+|++|++.+ +|.....+
T Consensus 448 ~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~~ 526 (844)
T 3j0a_A 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV-LSHNDLPA 526 (844)
T ss_dssp CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSS-CCCCCCCS
T ss_pred ccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCc-cChhhhhc
Confidence 56788888888888875 3344567778888888888888888778888888888888888888844 44443448
Q ss_pred CcceEEEecCCCCCcccccccccCCCCcEEEEecC
Q 038861 1081 NLESLEVHDLKISKPLFEWGLNKFSSLRELQITGG 1115 (1165)
Q Consensus 1081 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 1115 (1165)
+|+.|++++|++.+..+. .+++|+.|++++|
T Consensus 527 ~L~~L~Ls~N~l~~~~~~----~~~~L~~l~l~~N 557 (844)
T 3j0a_A 527 NLEILDISRNQLLAPNPD----VFVSLSVLDITHN 557 (844)
T ss_dssp CCCEEEEEEECCCCCCSC----CCSSCCEEEEEEE
T ss_pred cccEEECCCCcCCCCChh----HhCCcCEEEecCC
Confidence 888888888888875443 2457888888876
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.4e-35 Score=365.79 Aligned_cols=321 Identities=14% Similarity=0.075 Sum_probs=185.6
Q ss_pred eeeccCccccccc-cccccCcccccccccCCCC-cccc-CcccccCCCccEEeccCcchhccccccccCCCCcceeeccC
Q 038861 391 VFSLWGYCNIFNL-PNEIGNLRHLRFLNLSGTN-IQIL-PESINSLYNLHTILLEDCRRLKKLCNDMGNLTKLHHLRNSN 467 (1165)
Q Consensus 391 ~l~l~~~~~l~~l-p~~~~~l~~Lr~L~L~~~~-i~~l-p~~~~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~ 467 (1165)
+|+++++ .+..+ |..|.++++|++|+|++|. +..+ |..|+++++|++|+|++|......|..|+++++|++|++++
T Consensus 28 ~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 106 (844)
T 3j0a_A 28 RLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYF 106 (844)
T ss_dssp EEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTT
T ss_pred EEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcC
Confidence 7888888 77776 6779999999999999995 4466 77899999999999999988888899999999999999999
Q ss_pred CCCCCCCCCC--cccccccceeceEEeccccCCCccccCCccccccceeeccccCCCchhhhhHhhcCCCcCccceEeee
Q 038861 468 VHSLGEMPKG--FGKLTCLLTLGRFVVGKVSGSGLRELKSLTHLQETLRISKLENVKDVCDACEAQLNNKVNLKALLLEW 545 (1165)
Q Consensus 468 ~~~~~~~p~~--i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 545 (1165)
|.+.+.+|.. ++++++|++|.....
T Consensus 107 n~l~~~~~~~~~~~~L~~L~~L~Ls~N----------------------------------------------------- 133 (844)
T 3j0a_A 107 CGLSDAVLKDGYFRNLKALTRLDLSKN----------------------------------------------------- 133 (844)
T ss_dssp CCCSSCCSTTCCCSSCSSCCEEEEESC-----------------------------------------------------
T ss_pred CCCCcccccCccccccCCCCEEECCCC-----------------------------------------------------
Confidence 9966666665 888888888842211
Q ss_pred ccccccCccchhhHHhh-hccCCCCcCcceEEEEeeCCCCC-CcCcCCCCCCceeEEeEcccCCCCCCC-CCCCCCC---
Q 038861 546 SIWHVRNLDQCEFETRV-LSMLKPYQDVQELTITGYGGPKF-PIWLGDSSFSKLVRLKFEHCGTSTSLP-SVGQLPF--- 619 (1165)
Q Consensus 546 ~~~~~~~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~--- 619 (1165)
.+.... ...+..+++|+.|++++|..... |..+.....++|+.|++++|.+....| .++.+++
T Consensus 134 -----------~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 202 (844)
T 3j0a_A 134 -----------QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202 (844)
T ss_dssp -----------CCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTT
T ss_pred -----------cccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccc
Confidence 111111 12345566777777777665443 333321001567777777777666554 3444443
Q ss_pred ---CceeeecCCCCceEeCccccCCCCccCCCCcceeecccccc--------ccccccCCCCCcccCcCCccceeeecCC
Q 038861 620 ---LKELVISGMGRVKSVGSEFYGSSCSVPFPSLETLYFANMQE--------WEEWIPFGSGQEVDEVFPKLRKLSLFSC 688 (1165)
Q Consensus 620 ---L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--------l~~~~~~~~~~~~~~~~~~L~~L~l~~c 688 (1165)
|+.|++++|......+..+... ...+.++.|.+..+.. +.......+. ....++|+.|++++
T Consensus 203 ~~~L~~L~Ls~n~l~~~~~~~~~~~---l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~---~l~~~~L~~L~Ls~- 275 (844)
T 3j0a_A 203 NMVLEILDVSGNGWTVDITGNFSNA---ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA---GLARSSVRHLDLSH- 275 (844)
T ss_dssp TCCBSEEBCSSCCSSTTTTSGGGGT---SCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT---TTTTSCCCEEECTT-
T ss_pred cCceeEEecCCCcCchhHHHHHHhh---cCcccccceecccccccccccccccCCCChhhhh---ccccCCccEEECCC-
Confidence 7777777775544444333221 0123455555442110 0000000000 00135666666666
Q ss_pred cccccCCCccccccceEEeecccccccccCCCCCceEEEEecCCcccccCcccccccccccccccceeEeccC--CCccc
Q 038861 689 SKLQGALPKRLLLLERLVIQSCKQLLVTIQCLPALSELQIKGCKRVVLSSPMDLSSLKSVLLGEMANEVISGC--PQLLS 766 (1165)
Q Consensus 689 ~~l~~~~p~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~~~l~~~~i~~~--~~l~~ 766 (1165)
+.+.+..|. .+..+++|+.|++++| .+....+..|..++.|+.+++++|.+..+ ..+..
T Consensus 276 n~l~~~~~~------------------~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 336 (844)
T 3j0a_A 276 GFVFSLNSR------------------VFETLKDLKVLNLAYN-KINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG 336 (844)
T ss_dssp CCCCEECSC------------------CSSSCCCCCEEEEESC-CCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSS
T ss_pred CcccccChh------------------hhhcCCCCCEEECCCC-cCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcC
Confidence 344422222 4556667777777763 34444444444444444444444444433 13344
Q ss_pred cCCcCceEecCCCCccccchhhcCCCCcceEEEcCC
Q 038861 767 LVTEDDLELSNCKGLTKLPQALLTLSSLRELRISGC 802 (1165)
Q Consensus 767 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 802 (1165)
+++|+.|++++|.+....+..|..+++|+.|++++|
T Consensus 337 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp CTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETC
T ss_pred CCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCC
Confidence 444445555544444333334444455555555444
No 12
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1e-36 Score=356.67 Aligned_cols=283 Identities=19% Similarity=0.234 Sum_probs=224.4
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCc-eEEEEEcCCCCHHHHHHHHHHh
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEI-KAWTFVSEDFDVFRVTKSILMS 79 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~-~~w~~~~~~~~~~~~~~~i~~~ 79 (1165)
|||++++++|.++|.... +.++|+|+||||+||||||+++|++.+++.+|+. ++|+++++..+...++..++..
T Consensus 131 VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~l 205 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205 (1221)
T ss_dssp CCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 799999999999997532 3689999999999999999999987778889986 8899999999988888887765
Q ss_pred ccCCC---C-CC-------CCHHHHHHHHHHHh---cCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCchH
Q 038861 80 ISNVT---V-ND-------NDLNSLQEKLEKEL---IKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRV 145 (1165)
Q Consensus 80 l~~~~---~-~~-------~~~~~~~~~l~~~l---~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~ 145 (1165)
++... . .. .+.+.+...+++.+ +++|+||||||||+. ..|+.+ ++||+||||||++.
T Consensus 206 L~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f-------~pGSRILVTTRd~~ 276 (1221)
T 1vt4_I 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF-------NLSCKILLTTRFKQ 276 (1221)
T ss_dssp HHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH-------HSSCCEEEECSCSH
T ss_pred HhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh-------CCCeEEEEeccChH
Confidence 43211 0 00 12344556667655 689999999999883 455543 26899999999999
Q ss_pred HHHhhcccceeeCC------CCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHhhhcCCC-Chh
Q 038861 146 VAERVGSVREYPLG------ELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLGGLLRGKH-DPK 218 (1165)
Q Consensus 146 ~~~~~~~~~~~~l~------~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~-~~~ 218 (1165)
++..+.....++++ +|+++||++||++.. +.. . .++..+ .|+|+||||+++|+.|+.+. ...
T Consensus 277 Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~----~---eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~e 345 (1221)
T 1vt4_I 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR----P---QDLPRE---VLTTNPRRLSIIAESIRDGLATWD 345 (1221)
T ss_dssp HHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC----T---TTHHHH---HCCCCHHHHHHHHHHHHHSCSSHH
T ss_pred HHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC----H---HHHHHH---HhCCCHHHHHHHHHHHhCCCCCHH
Confidence 88655444456666 899999999999883 221 1 123333 39999999999999999874 466
Q ss_pred HHHHHHhccccccCCCCCChhHHHHhccccCcHHH-HhHhhhhcCCCCCCccChHHHHHHHHHcCCcccccCcccHHHHH
Q 038861 219 DWEIVLNADVWDFADDGCDIIPALKVSYRFLPPQL-KQCFAYCSLFPKDYEFEEEEIILLWTAEGFLDQECDGRKMEELG 297 (1165)
Q Consensus 219 ~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~-k~~fl~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~ 297 (1165)
.|+.. ....+..++++||+.|++++ |+||++||+||+++.|+.+.++..|.++| ++.+
T Consensus 346 eW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedA 404 (1221)
T 1vt4_I 346 NWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDV 404 (1221)
T ss_dssp HHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHH
T ss_pred HHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHHH
Confidence 77653 12468999999999999999 99999999999999999999999998776 1347
Q ss_pred HHHHHHHHHcCccccccCCCCeEEEehHHHHHH
Q 038861 298 REFVRELHSRSLFHQSSKDASRFVMHSLINDLA 330 (1165)
Q Consensus 298 ~~~l~~L~~~~li~~~~~~~~~~~~H~li~~~~ 330 (1165)
+.++++|+++||++.. .+..+|+||+++++++
T Consensus 405 e~~L~eLvdRSLLq~d-~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 405 MVVVNKLHKYSLVEKQ-PKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHTSSSSSBC-SSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHhhCCEEEe-CCCCEEEehHHHHHHh
Confidence 8899999999999874 3457899999999854
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=349.91 Aligned_cols=508 Identities=15% Similarity=0.078 Sum_probs=291.2
Q ss_pred eeeccCccccccccccccCcccccccccCCCCccccC-cccccCCCccEEeccCcchhccccccccCCCCcceeeccCCC
Q 038861 391 VFSLWGYCNIFNLPNEIGNLRHLRFLNLSGTNIQILP-ESINSLYNLHTILLEDCRRLKKLCNDMGNLTKLHHLRNSNVH 469 (1165)
Q Consensus 391 ~l~l~~~~~l~~lp~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 469 (1165)
..+..+. ++..+|..+. .++++|++++|.++.++ ..|.++++|++|++++|......|..|.++++|++|++++|.
T Consensus 11 ~~~c~~~-~l~~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 87 (570)
T 2z63_A 11 TYQCMEL-NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (570)
T ss_dssp EEECCSS-CCSSCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEEeCCC-CccccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc
Confidence 3455554 6788887663 57899999999998774 478899999999999987666667778999999999999988
Q ss_pred CCCCCCCCcccccccceeceEEeccccCCCccccCCccccccceeeccccCCCchhhhhHhhcCCCcCccceEeeecccc
Q 038861 470 SLGEMPKGFGKLTCLLTLGRFVVGKVSGSGLRELKSLTHLQETLRISKLENVKDVCDACEAQLNNKVNLKALLLEWSIWH 549 (1165)
Q Consensus 470 ~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 549 (1165)
+....|..|+.+++|++|.
T Consensus 88 l~~~~~~~~~~l~~L~~L~------------------------------------------------------------- 106 (570)
T 2z63_A 88 IQSLALGAFSGLSSLQKLV------------------------------------------------------------- 106 (570)
T ss_dssp CCEECTTTTTTCTTCCEEE-------------------------------------------------------------
T ss_pred CCccCHhhhcCcccccccc-------------------------------------------------------------
Confidence 4444456677777777773
Q ss_pred ccCccchhhHHhhhccCCCCcCcceEEEEeeCCCC--CCcCcCCCCCCceeEEeEcccCCCCCCC-CCCCCCCC----ce
Q 038861 550 VRNLDQCEFETRVLSMLKPYQDVQELTITGYGGPK--FPIWLGDSSFSKLVRLKFEHCGTSTSLP-SVGQLPFL----KE 622 (1165)
Q Consensus 550 ~~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L----~~ 622 (1165)
+..+.+.......+..+++|++|++++|.... +|..+.. +++|+.|++++|.+....+ .++.+++| +.
T Consensus 107 ---L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~ 181 (570)
T 2z63_A 107 ---AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN--LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181 (570)
T ss_dssp ---CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGG--CTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCE
T ss_pred ---ccccccccCCCccccccccccEEecCCCccceecChhhhcc--cCCCCEEeCcCCccceecHHHccchhccchhhhh
Confidence 11111111112235556677777777776554 4555543 6777777777777655444 35555555 67
Q ss_pred eeecCCCCceEeCccccCCCCccCCCCcceeeccccccccccccCCCCCcccCcCCccceeeecCCcccccCCCcccccc
Q 038861 623 LVISGMGRVKSVGSEFYGSSCSVPFPSLETLYFANMQEWEEWIPFGSGQEVDEVFPKLRKLSLFSCSKLQGALPKRLLLL 702 (1165)
Q Consensus 623 L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L 702 (1165)
|++++|......+..+.. .+|+.|++.++..-....+. ....++.++.+.+.. ..+.. ...+
T Consensus 182 L~l~~n~l~~~~~~~~~~-------~~L~~L~l~~n~~~~~~~~~-----~~~~l~~l~~~~l~~-~~~~~-----~~~l 243 (570)
T 2z63_A 182 LDLSLNPMNFIQPGAFKE-------IRLHKLTLRNNFDSLNVMKT-----CIQGLAGLEVHRLVL-GEFRN-----EGNL 243 (570)
T ss_dssp EECTTCCCCEECTTTTTT-------CEEEEEEEESCCSCTTHHHH-----HHHTTTTCEEEEEEE-EECCC-----CSSC
T ss_pred cccCCCCceecCHHHhcc-------CcceeEecccccccccchhh-----hhcCccccceeeecc-ccccC-----chhh
Confidence 777777554444433322 25666666553210000000 001122333222211 00000 0000
Q ss_pred ceEEeecccccccccCCCC--CceEEEEecCCcccccCcccccccccccccccceeEeccCCCccccCCcCceEecCCCC
Q 038861 703 ERLVIQSCKQLLVTIQCLP--ALSELQIKGCKRVVLSSPMDLSSLKSVLLGEMANEVISGCPQLLSLVTEDDLELSNCKG 780 (1165)
Q Consensus 703 ~~L~~~~~~~~~~~~~~l~--~L~~L~l~~~~~l~~~~~~~~~~l~~l~~~~l~~~~i~~~~~l~~l~~L~~L~l~~~~~ 780 (1165)
+.+.. ..+..++ .++.+++.++..+....+..+ ..+++|++|++++|.+
T Consensus 244 ~~~~~-------~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~----------------------~~l~~L~~L~l~~~~l 294 (570)
T 2z63_A 244 EKFDK-------SALEGLCNLTIEEFRLAYLDYYLDDIIDLF----------------------NCLTNVSSFSLVSVTI 294 (570)
T ss_dssp EECCT-------TTTGGGGGSEEEEEEEEETTEEESCSTTTT----------------------GGGTTCSEEEEESCEE
T ss_pred hhcch-------hhhccccccchhhhhhhcchhhhhhchhhh----------------------cCcCcccEEEecCccc
Confidence 00000 0011111 234455555433333333333 3445555555555543
Q ss_pred ccccchhhcCCCCcceEEEcCCCCccccCCCCCcccccEEEeccCCCCCCChHHHhhcCccccccccccceeeccccccc
Q 038861 781 LTKLPQALLTLSSLRELRISGCASLVSFPQAALPSQLRTFKIEHCNALESLPEAWMRNSNSSLQSLEIGTIEIEECNALE 860 (1165)
Q Consensus 781 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~l~ 860 (1165)
. .+|..+..+ +|++|++++|... .++. ..+++|++|++++|......+.
T Consensus 295 ~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~n~~~~~~~~--------------------------- 343 (570)
T 2z63_A 295 E-RVKDFSYNF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGGNAFSE--------------------------- 343 (570)
T ss_dssp C-SCCBCCSCC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEEESCBSCCBCCC---------------------------
T ss_pred h-hhhhhhccC-CccEEeeccCccc-ccCc-ccccccCEEeCcCCcccccccc---------------------------
Confidence 3 345455555 6666666666433 3332 3445666666666653322221
Q ss_pred CCchhhhcCCCCCcceEEEeCCCCCcc---ccccCCccccceEeeccCcCcccccCCcCccccCCCCccccccCCCCccc
Q 038861 861 SLPEAWMQDSSTSLESLNIDGCDSLTY---IARIQLPPSLRRLIISDCYNLRTLTGDQGICSSRSGRTSLTSFSSENELP 937 (1165)
Q Consensus 861 ~l~~~~~~~~l~~L~~L~l~~~~~l~~---~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 937 (1165)
..+++|++|++++|..... ...+..+++|++|++++|.. ..++
T Consensus 344 --------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~------------------------- 389 (570)
T 2z63_A 344 --------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMS------------------------- 389 (570)
T ss_dssp --------CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSE-EEEE-------------------------
T ss_pred --------ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcc-cccc-------------------------
Confidence 0134455555554443221 11233444555555555421 0000
Q ss_pred ccccceeecccccccccccCCCCCCCccEEEEcCCCCchhhhh-hcc-cCccceeeeecccccccCCcccCCCCCCCEEE
Q 038861 938 ATLEQLEVRFCSNLAFLSRNGNLPQALKYLEVSYCSKLESLAE-RLD-NTSLEVIAISYLENLKSLPAGLHNLHHLQELK 1015 (1165)
Q Consensus 938 ~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~-~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 1015 (1165)
+.+.. .++|+.|++++|...+..+. .+. .++|++|++++|.+.+..|..+.++++|++|+
T Consensus 390 ~~~~~------------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 451 (570)
T 2z63_A 390 SNFLG------------------LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451 (570)
T ss_dssp EEEET------------------CTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred ccccc------------------cCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEE
Confidence 00000 13466666666655544331 222 27788888888888777788888888888888
Q ss_pred EeCCCCC-ccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceEEEecCCCC
Q 038861 1016 VYGCPNL-ESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESLEVHDLKIS 1093 (1165)
Q Consensus 1016 L~~n~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~ 1093 (1165)
+++|.+. +.+|..+..+++|++|++++|.+.+..|..|.++++|++|++++|++.+..+.. ..+++|+.|++++|++.
T Consensus 452 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 8888876 467788888888888888888888877888888888888888888886655544 67788888888888887
Q ss_pred Cccc
Q 038861 1094 KPLF 1097 (1165)
Q Consensus 1094 ~~~~ 1097 (1165)
+..+
T Consensus 532 ~~~~ 535 (570)
T 2z63_A 532 CSCP 535 (570)
T ss_dssp CCTT
T ss_pred CCCc
Confidence 6543
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=349.38 Aligned_cols=508 Identities=15% Similarity=0.081 Sum_probs=339.3
Q ss_pred ccccccCCCCccccCcccccCCCccEEeccCcchhccccccccCCCCcceeeccCCCCCCCCCCCcccccccceeceEEe
Q 038861 413 LRFLNLSGTNIQILPESINSLYNLHTILLEDCRRLKKLCNDMGNLTKLHHLRNSNVHSLGEMPKGFGKLTCLLTLGRFVV 492 (1165)
Q Consensus 413 Lr~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~ 492 (1165)
.++.+-++.+++.+|..+. .++++|++++|......+.+|.++++|++|++++|.+....|..++++++|++|.
T Consensus 9 ~~~~~c~~~~l~~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~---- 82 (570)
T 2z63_A 9 NITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI---- 82 (570)
T ss_dssp TTEEECCSSCCSSCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEE----
T ss_pred CcEEEeCCCCccccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEe----
Confidence 4556777788889998664 5799999999887777778899999999999999985444456688888888772
Q ss_pred ccccCCCccccCCccccccceeeccccCCCchhhhhHhhcCCCcCccceEeeeccccccCccchhhHHhhhccCCCCcCc
Q 038861 493 GKVSGSGLRELKSLTHLQETLRISKLENVKDVCDACEAQLNNKVNLKALLLEWSIWHVRNLDQCEFETRVLSMLKPYQDV 572 (1165)
Q Consensus 493 ~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~l~~~~~L 572 (1165)
+..+.+....+..+..+++|
T Consensus 83 ------------------------------------------------------------L~~n~l~~~~~~~~~~l~~L 102 (570)
T 2z63_A 83 ------------------------------------------------------------LTGNPIQSLALGAFSGLSSL 102 (570)
T ss_dssp ------------------------------------------------------------CTTCCCCEECTTTTTTCTTC
T ss_pred ------------------------------------------------------------CcCCcCCccCHhhhcCcccc
Confidence 22233333334566777888
Q ss_pred ceEEEEeeCCCCCCcCcCCCCCCceeEEeEcccCCCC-CCC-CCCCCCCCceeeecCCCCceEeCccccCCCCccCCCCc
Q 038861 573 QELTITGYGGPKFPIWLGDSSFSKLVRLKFEHCGTST-SLP-SVGQLPFLKELVISGMGRVKSVGSEFYGSSCSVPFPSL 650 (1165)
Q Consensus 573 ~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~-~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L 650 (1165)
+.|++.+|....+|.... ..+++|+.|++++|.+.. .+| .++++++|++|++++|......+..+.. +++|
T Consensus 103 ~~L~L~~n~l~~l~~~~~-~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------l~~L 175 (570)
T 2z63_A 103 QKLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV------LHQM 175 (570)
T ss_dssp CEEECTTSCCCCSTTCSC-TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHH------HHTC
T ss_pred ccccccccccccCCCccc-cccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccc------hhcc
Confidence 888888888777765322 247788888888888765 345 5778888888888887655444433332 3444
Q ss_pred ----ceeeccccccccccccCCCCCcccCcCCccceeeecCCcccccCCCccccccceEEeecccccccccCCCCCceEE
Q 038861 651 ----ETLYFANMQEWEEWIPFGSGQEVDEVFPKLRKLSLFSCSKLQGALPKRLLLLERLVIQSCKQLLVTIQCLPALSEL 726 (1165)
Q Consensus 651 ----~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L 726 (1165)
..|+++++. +....+..+. ..+|+.|+++++ ... +..++..+..++.++.+
T Consensus 176 ~~~~~~L~l~~n~-l~~~~~~~~~------~~~L~~L~l~~n-~~~-----------------~~~~~~~~~~l~~l~~~ 230 (570)
T 2z63_A 176 PLLNLSLDLSLNP-MNFIQPGAFK------EIRLHKLTLRNN-FDS-----------------LNVMKTCIQGLAGLEVH 230 (570)
T ss_dssp TTCCCEEECTTCC-CCEECTTTTT------TCEEEEEEEESC-CSC-----------------TTHHHHHHHTTTTCEEE
T ss_pred chhhhhcccCCCC-ceecCHHHhc------cCcceeEecccc-ccc-----------------ccchhhhhcCcccccee
Confidence 455555432 1211111100 124555555542 110 01112234445555554
Q ss_pred EEecCCcccccCcccccccccccccccceeEeccCCCccccC--CcCceEecCC-CCccccchhhcCCCCcceEEEcCCC
Q 038861 727 QIKGCKRVVLSSPMDLSSLKSVLLGEMANEVISGCPQLLSLV--TEDDLELSNC-KGLTKLPQALLTLSSLRELRISGCA 803 (1165)
Q Consensus 727 ~l~~~~~l~~~~~~~~~~l~~l~~~~l~~~~i~~~~~l~~l~--~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~ 803 (1165)
.+.... . .....+. .+. ...+..+. .++.++++++ ...+..|..+..+++|+.|++++|.
T Consensus 231 ~l~~~~-~--------~~~~~l~--~~~------~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 293 (570)
T 2z63_A 231 RLVLGE-F--------RNEGNLE--KFD------KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293 (570)
T ss_dssp EEEEEE-C--------CCCSSCE--ECC------TTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE
T ss_pred eecccc-c--------cCchhhh--hcc------hhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc
Confidence 443211 0 0000000 000 01111111 2456677766 4556677888889999999999985
Q ss_pred CccccCCC-CCcccccEEEeccCCCCCCChHHHhhcCccccccccccceeecccccccCCchhhhcCCCCCcceEEEeCC
Q 038861 804 SLVSFPQA-ALPSQLRTFKIEHCNALESLPEAWMRNSNSSLQSLEIGTIEIEECNALESLPEAWMQDSSTSLESLNIDGC 882 (1165)
Q Consensus 804 ~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~ 882 (1165)
.. .++.. ... +|++|++++|.+. .+|. ..+++|++|++++|
T Consensus 294 l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~-----------------------------------~~l~~L~~L~l~~n 335 (570)
T 2z63_A 294 IE-RVKDFSYNF-GWQHLELVNCKFG-QFPT-----------------------------------LKLKSLKRLTFTSN 335 (570)
T ss_dssp EC-SCCBCCSCC-CCSEEEEESCBCS-SCCB-----------------------------------CBCSSCCEEEEESC
T ss_pred ch-hhhhhhccC-CccEEeeccCccc-ccCc-----------------------------------ccccccCEEeCcCC
Confidence 44 44433 334 8888888888743 3321 12678999999998
Q ss_pred CCCccccccCCccccceEeeccCcCcccccCCcCccccCCCCccccccCCCCcccccccceeecccccccccccCCCCCC
Q 038861 883 DSLTYIARIQLPPSLRRLIISDCYNLRTLTGDQGICSSRSGRTSLTSFSSENELPATLEQLEVRFCSNLAFLSRNGNLPQ 962 (1165)
Q Consensus 883 ~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 962 (1165)
......+. ..+++|++|++++|.. .... ..+..+.. .+
T Consensus 336 ~~~~~~~~-~~~~~L~~L~l~~n~l-~~~~----------------------~~~~~~~~------------------~~ 373 (570)
T 2z63_A 336 KGGNAFSE-VDLPSLEFLDLSRNGL-SFKG----------------------CCSQSDFG------------------TT 373 (570)
T ss_dssp BSCCBCCC-CBCTTCCEEECCSSCC-BEEE----------------------EEEHHHHT------------------CS
T ss_pred cccccccc-ccCCCCCEEeCcCCcc-Cccc----------------------cccccccc------------------cC
Confidence 76555444 6778999999988741 1100 00111111 15
Q ss_pred CccEEEEcCCCCchhhhhhcccCccceeeeecccccccCC-cccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEee
Q 038861 963 ALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLP-AGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIG 1041 (1165)
Q Consensus 963 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 1041 (1165)
+|+.|++++|...+..+.....++|+.|++++|.+.+..| ..+.++++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 374 ~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 453 (570)
T 2z63_A 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453 (570)
T ss_dssp CCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred ccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECc
Confidence 6999999999766655443334899999999999887765 568889999999999999888888889999999999999
Q ss_pred cCCCC-CcCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCC
Q 038861 1042 YCENL-KALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGC 1116 (1165)
Q Consensus 1042 ~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 1116 (1165)
+|.+. +.+|..+..+++|+.|++++|++.+..|.. ..+++|+.|++++|++.+. ++..|.++++|+.|++++|.
T Consensus 454 ~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV-PDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred CCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCC-CHHHhhcccCCcEEEecCCc
Confidence 99887 567888999999999999999997776766 7889999999999998875 44458889999999999874
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=8.4e-34 Score=340.16 Aligned_cols=192 Identities=20% Similarity=0.105 Sum_probs=110.6
Q ss_pred CCccEEEEcCCCCchhhhhhc--ccCccceeeeecccccccCC---cccCCCCCCCEEEEeCCCCCcccc--CCCCCCCC
Q 038861 962 QALKYLEVSYCSKLESLAERL--DNTSLEVIAISYLENLKSLP---AGLHNLHHLQELKVYGCPNLESFP--EGGLPSTK 1034 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~L~~n~~~~~~p---~~~~~l~~L~~L~L~~n~~~~~~~--~~~~~l~~ 1034 (1165)
.+|+.|++++|.+ +.+|..+ ..++|++|++++|.+.+.+| ..+..+++|++|++++|.+.+..+ ..+..+++
T Consensus 310 ~~L~~L~l~~n~l-~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~ 388 (549)
T 2z81_A 310 EKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 388 (549)
T ss_dssp TTCCEEEEESSCC-CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTT
T ss_pred ccceEEEeccCcc-ccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCC
Confidence 3466666666643 3444433 23666666666666665543 235566666666666666544322 23555666
Q ss_pred cCeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCCCCCCCcceEEEecCCCCCcccccccccCCCCcEEEEec
Q 038861 1035 LTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPEDGFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITG 1114 (1165)
Q Consensus 1035 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 1114 (1165)
|++|++++|.+. .+|..+..+++|++|++++|.+ ..+|.. .+++|+.|++++|++.+. ...+++|++|++++
T Consensus 389 L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l-~~l~~~-~~~~L~~L~Ls~N~l~~~-----~~~l~~L~~L~Ls~ 460 (549)
T 2z81_A 389 LTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI-RVVKTC-IPQTLEVLDVSNNNLDSF-----SLFLPRLQELYISR 460 (549)
T ss_dssp CCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCC-SCCCTT-SCTTCSEEECCSSCCSCC-----CCCCTTCCEEECCS
T ss_pred CCEEECCCCCCc-cCChhhcccccccEEECCCCCc-ccccch-hcCCceEEECCCCChhhh-----cccCChhcEEECCC
Confidence 666666666655 3555566666666666666665 233322 235666666666666552 24566666666666
Q ss_pred CCCCcccCCCCCCcccEEEecCCCCcccHHHhhhcCCccceEeecCCC
Q 038861 1115 GCPVLLSSPWFPASLTVLHISYMPNLESLSLIVENLTSLEILILCKCP 1162 (1165)
Q Consensus 1115 n~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 1162 (1165)
|.+..++.....++|++|++++|..-...+..+..+++|+.|++++|+
T Consensus 461 N~l~~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 461 NKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp SCCSSCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred CccCcCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence 665544443445666666666654333333446666677777776665
No 16
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.4e-33 Score=368.12 Aligned_cols=305 Identities=22% Similarity=0.343 Sum_probs=238.8
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcch-hccC-CceEEEEEcCCCC--HHHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRV-RRHF-EIKAWTFVSEDFD--VFRVTKSI 76 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~-~~~f-~~~~w~~~~~~~~--~~~~~~~i 76 (1165)
|||++++++|.++|.... +.+++|+|+||||+||||||+++|++.+. ..+| +.++|+.+++..+ ....+..+
T Consensus 127 vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 202 (1249)
T 3sfz_A 127 VTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNL 202 (1249)
T ss_dssp CCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHH
Confidence 799999999999997542 35789999999999999999999987543 4445 4666999987543 33446666
Q ss_pred HHhccCCC----CCCCCHHHHHHHHHHHhcCc--eEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCchHHHHh-
Q 038861 77 LMSISNVT----VNDNDLNSLQEKLEKELIKK--KFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRVVAER- 149 (1165)
Q Consensus 77 ~~~l~~~~----~~~~~~~~~~~~l~~~l~~~--~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~~~~~- 149 (1165)
+..+.... ....+.+++...++..+.++ |+||||||||+. .+|.. ..+|++||||||++.++..
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~-------~~~~~~ilvTtR~~~~~~~~ 273 (1249)
T 3sfz_A 203 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKA-------FDNQCQILLTTRDKSVTDSV 273 (1249)
T ss_dssp HHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTT-------TCSSCEEEEEESSTTTTTTC
T ss_pred HHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHh-------hcCCCEEEEEcCCHHHHHhh
Confidence 66665432 23456778888899999877 999999999864 33332 2579999999999988754
Q ss_pred hcccceeeCCC-CCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHhhhcCCCChhHHHHHHhccc
Q 038861 150 VGSVREYPLGE-LSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLGGLLRGKHDPKDWEIVLNADV 228 (1165)
Q Consensus 150 ~~~~~~~~l~~-l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~~~~~~ 228 (1165)
......+++++ |+++||+++|...+.... +...+.+++|+++|+|+||||+++|++|+.+. ..|+..++...
T Consensus 274 ~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~ 346 (1249)
T 3sfz_A 274 MGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQ 346 (1249)
T ss_dssp CSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHH
T ss_pred cCCceEEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHh
Confidence 34557899996 999999999998874322 23346789999999999999999999998764 35766655432
Q ss_pred cccCC--------CCCChhHHHHhccccCcHHHHhHhhhhcCCCCCCccChHHHHHHHHHcCCcccccCcccHHHHHHHH
Q 038861 229 WDFAD--------DGCDIIPALKVSYRFLPPQLKQCFAYCSLFPKDYEFEEEEIILLWTAEGFLDQECDGRKMEELGREF 300 (1165)
Q Consensus 229 ~~~~~--------~~~~~~~~l~~sy~~L~~~~k~~fl~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~ 300 (1165)
..... ....+..++++||+.|++++|.||++||+||+++.|+.+.++..|.++ ++.++++
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~ 414 (1249)
T 3sfz_A 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDI 414 (1249)
T ss_dssp SCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHH
T ss_pred hhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHH
Confidence 21111 113588999999999999999999999999999999999999999543 3568889
Q ss_pred HHHHHHcCccccccCC-CCeEEEehHHHHHHHHhcccc
Q 038861 301 VRELHSRSLFHQSSKD-ASRFVMHSLINDLARWAAGEI 337 (1165)
Q Consensus 301 l~~L~~~~li~~~~~~-~~~~~~H~li~~~~~~~~~~~ 337 (1165)
+++|++++|++....+ ..+|+||+++|+|++.++.++
T Consensus 415 l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 415 LQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 9999999999875432 346999999999999887654
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1e-32 Score=327.86 Aligned_cols=131 Identities=16% Similarity=0.085 Sum_probs=97.4
Q ss_pred CCccEEEEcCCCCch--hhhhhccc-CccceeeeecccccccCCc-ccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCe
Q 038861 962 QALKYLEVSYCSKLE--SLAERLDN-TSLEVIAISYLENLKSLPA-GLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTK 1037 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~--~~~~~~~~-~~L~~L~L~~n~~~~~~p~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 1037 (1165)
++|+.|++++|.+.+ .+|..+.. ++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+..|..+. ++|+.
T Consensus 348 ~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~ 425 (520)
T 2z7x_B 348 TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKV 425 (520)
T ss_dssp SSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCE
T ss_pred CCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCE
Confidence 457777777776654 44444444 8888888888888775555 377788888888888888777776654 68888
Q ss_pred EEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC--CCCCCcceEEEecCCCCCcc
Q 038861 1038 LTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED--GFPTNLESLEVHDLKISKPL 1096 (1165)
Q Consensus 1038 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~--~~~~~L~~L~l~~n~~~~~~ 1096 (1165)
|++++|.+. .+|..+.++++|++|++++|++. .+|.. ..+++|+.|++++|++....
T Consensus 426 L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 426 LDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp EECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred EECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccC
Confidence 888888876 56766778888888888888885 55553 56788888888888887543
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.4e-33 Score=340.40 Aligned_cols=66 Identities=15% Similarity=0.257 Sum_probs=41.3
Q ss_pred ccccccccCCCCcc-ccCcccccCCCccEEeccCcch------hc------cccccccCCCCcceeeccCCCCCCCCCCC
Q 038861 411 RHLRFLNLSGTNIQ-ILPESINSLYNLHTILLEDCRR------LK------KLCNDMGNLTKLHHLRNSNVHSLGEMPKG 477 (1165)
Q Consensus 411 ~~Lr~L~L~~~~i~-~lp~~~~~L~~L~~L~L~~~~~------~~------~lp~~i~~L~~L~~L~l~~~~~~~~~p~~ 477 (1165)
.+++.|+|+++.+. .+|+++++|++|++|+|++|.. .+ .+|... +.+|+ +++.++......|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 35677777777777 6777777777777777777643 11 333333 55566 666666655555544
Q ss_pred cc
Q 038861 478 FG 479 (1165)
Q Consensus 478 i~ 479 (1165)
++
T Consensus 158 ~~ 159 (636)
T 4eco_A 158 FS 159 (636)
T ss_dssp SC
T ss_pred HH
Confidence 44
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5.8e-32 Score=331.89 Aligned_cols=523 Identities=15% Similarity=0.083 Sum_probs=295.3
Q ss_pred eccCccccccccccccCcccccccccCCCCccccCc-ccccCCCccEEeccCcchhccccccccCCCCcceeeccCCCCC
Q 038861 393 SLWGYCNIFNLPNEIGNLRHLRFLNLSGTNIQILPE-SINSLYNLHTILLEDCRRLKKLCNDMGNLTKLHHLRNSNVHSL 471 (1165)
Q Consensus 393 ~l~~~~~l~~lp~~~~~l~~Lr~L~L~~~~i~~lp~-~~~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~ 471 (1165)
+..+. +++++|..+. ..+++|||++|+|+.+|+ +|.++++|++|+|++|......|.+|.+|++|++|++++|+ +
T Consensus 37 ~c~~~-~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l 112 (635)
T 4g8a_A 37 QCMEL-NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-I 112 (635)
T ss_dssp ECTTS-CCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-C
T ss_pred ECCCC-CcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-C
Confidence 34443 6677776652 467788888888877753 67778888888888776555555667788888888888777 4
Q ss_pred CCCCC-CcccccccceeceEEeccccCCCccccCCccccccceeeccccCCCchhhhhHhhcCCCcCccceEeeeccccc
Q 038861 472 GEMPK-GFGKLTCLLTLGRFVVGKVSGSGLRELKSLTHLQETLRISKLENVKDVCDACEAQLNNKVNLKALLLEWSIWHV 550 (1165)
Q Consensus 472 ~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 550 (1165)
..+|. .|+.+++|++|.
T Consensus 113 ~~l~~~~f~~L~~L~~L~-------------------------------------------------------------- 130 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLV-------------------------------------------------------------- 130 (635)
T ss_dssp CEECGGGGTTCTTCCEEE--------------------------------------------------------------
T ss_pred CCCCHHHhcCCCCCCEEE--------------------------------------------------------------
Confidence 44443 356666666652
Q ss_pred cCccchhhHHhhhccCCCCcCcceEEEEeeCCCCC--CcCcCCCCCCceeEEeEcccCCCCCCC-CCCCCCCC----cee
Q 038861 551 RNLDQCEFETRVLSMLKPYQDVQELTITGYGGPKF--PIWLGDSSFSKLVRLKFEHCGTSTSLP-SVGQLPFL----KEL 623 (1165)
Q Consensus 551 ~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L----~~L 623 (1165)
+..+.+.......+..+++|+.|++++|.+..+ |..+. .+++|+.|++++|.+....+ .+..+.++ ..+
T Consensus 131 --Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~ 206 (635)
T 4g8a_A 131 --AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS--NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 206 (635)
T ss_dssp --CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG--GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEE
T ss_pred --CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhc--cchhhhhhcccCccccccccccccchhhhhhhhhhh
Confidence 122222222223345556666666666654433 33332 25666666666666554433 23322222 234
Q ss_pred eecCCCCceEeCccccCCCCccCCCCcceeeccccccccccccCCCCCcccCcCCccceeeecC--C---cccccCCCcc
Q 038861 624 VISGMGRVKSVGSEFYGSSCSVPFPSLETLYFANMQEWEEWIPFGSGQEVDEVFPKLRKLSLFS--C---SKLQGALPKR 698 (1165)
Q Consensus 624 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~--c---~~l~~~~p~~ 698 (1165)
+++.|.... ++..... ...+..+.+.++...-..... ....++.++...+.. + ..+....+.
T Consensus 207 ~ls~n~l~~-i~~~~~~------~~~~~~l~l~~n~~~~~~~~~-----~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~- 273 (635)
T 4g8a_A 207 DLSLNPMNF-IQPGAFK------EIRLHKLTLRNNFDSLNVMKT-----CIQGLAGLEVHRLVLGEFRNEGNLEKFDKS- 273 (635)
T ss_dssp ECTTCCCCE-ECTTTTT------TCEEEEEEEESCCSSHHHHHH-----HHHTTTTCEEEEEEEECCTTSCCCSCCCTT-
T ss_pred hcccCcccc-cCccccc------chhhhhhhhhcccccccccch-----hhcCCccccccccccccccccccccccccc-
Confidence 455543322 2222111 223333443332110000000 000122222222211 0 000000000
Q ss_pred ccccceEEeecccccccccCCCCCceEEEEecC--CcccccCcccccccccccccccceeEeccCCCccccCCcCceEec
Q 038861 699 LLLLERLVIQSCKQLLVTIQCLPALSELQIKGC--KRVVLSSPMDLSSLKSVLLGEMANEVISGCPQLLSLVTEDDLELS 776 (1165)
Q Consensus 699 l~~L~~L~~~~~~~~~~~~~~l~~L~~L~l~~~--~~l~~~~~~~~~~l~~l~~~~l~~~~i~~~~~l~~l~~L~~L~l~ 776 (1165)
.+.....+....+..+ ..........+..+..+..+....+.+..+..+.....++.|++.
T Consensus 274 -----------------~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~ 336 (635)
T 4g8a_A 274 -----------------ALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELV 336 (635)
T ss_dssp -----------------TTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEE
T ss_pred -----------------ccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcc
Confidence 1122223333332221 111112222334444444445555555555555566667777777
Q ss_pred CCCCccccchhhcCCCCcceEEEcCCCCccccCCCCCcccccEEEeccCCCCCC--ChHHHhhcCccccccccccceeec
Q 038861 777 NCKGLTKLPQALLTLSSLRELRISGCASLVSFPQAALPSQLRTFKIEHCNALES--LPEAWMRNSNSSLQSLEIGTIEIE 854 (1165)
Q Consensus 777 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~l~l~~~~l~ 854 (1165)
+|.+....+ ..++.|+.+++.+|... ..+....+++|+.|++++|.+... .+..+
T Consensus 337 ~~~~~~~~~---~~l~~L~~l~l~~n~~~-~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~------------------- 393 (635)
T 4g8a_A 337 NCKFGQFPT---LKLKSLKRLTFTSNKGG-NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD------------------- 393 (635)
T ss_dssp SCEESSCCC---CBCTTCCEEEEESCCSC-CBCCCCBCTTCCEEECCSSCCBEEEECCHHH-------------------
T ss_pred cccccCcCc---ccchhhhhcccccccCC-CCcccccccccccchhhccccccccccccch-------------------
Confidence 766543322 24566777777776433 223333456777777777653221 11111
Q ss_pred ccccccCCchhhhcCCCCCcceEEEeCCCCCccccccCCccccceEeeccCcCcccccCCcCccccCCCCccccccCCCC
Q 038861 855 ECNALESLPEAWMQDSSTSLESLNIDGCDSLTYIARIQLPPSLRRLIISDCYNLRTLTGDQGICSSRSGRTSLTSFSSEN 934 (1165)
Q Consensus 855 ~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~ 934 (1165)
..+.+|+.|++..+........+..+++|+.+++.++......+..
T Consensus 394 --------------~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~-------------------- 439 (635)
T 4g8a_A 394 --------------FGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS-------------------- 439 (635)
T ss_dssp --------------HSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSC--------------------
T ss_pred --------------hhhhhhhhhhccccccccccccccccccccchhhhhcccccccccc--------------------
Confidence 1256777787777765555555666777777777766432221110
Q ss_pred cccccccceeecccccccccccCCCCCCCccEEEEcCCCCchhhhhhccc-Cccceeeeecccccc-cCCcccCCCCCCC
Q 038861 935 ELPATLEQLEVRFCSNLAFLSRNGNLPQALKYLEVSYCSKLESLAERLDN-TSLEVIAISYLENLK-SLPAGLHNLHHLQ 1012 (1165)
Q Consensus 935 ~~~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~n~~~~-~~p~~~~~l~~L~ 1012 (1165)
.+ .-..+++.+++++|......+..+.. ++++.|++++|.... ..|..+..+++|+
T Consensus 440 ----~~------------------~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~ 497 (635)
T 4g8a_A 440 ----VF------------------LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 497 (635)
T ss_dssp ----TT------------------TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred ----cc------------------ccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccC
Confidence 00 01145788888888777666666555 888888888887554 4677888889999
Q ss_pred EEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCC-CCcceEEEecC
Q 038861 1013 ELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFP-TNLESLEVHDL 1090 (1165)
Q Consensus 1013 ~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~-~~L~~L~l~~n 1090 (1165)
+|+|++|.+.+..|..|.++++|++|+|++|.+.+..|..|.++++|++|++++|++.+..|.. ..+ ++|+.|++++|
T Consensus 498 ~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 498 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred EEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence 9999999888888888888899999999999888888888888999999999999987776665 444 68999999988
Q ss_pred CCCC
Q 038861 1091 KISK 1094 (1165)
Q Consensus 1091 ~~~~ 1094 (1165)
++..
T Consensus 578 p~~C 581 (635)
T 4g8a_A 578 DFAC 581 (635)
T ss_dssp CBCC
T ss_pred CCcc
Confidence 8764
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.6e-32 Score=330.26 Aligned_cols=125 Identities=19% Similarity=0.167 Sum_probs=80.5
Q ss_pred ccceeeeecccccccCCcccC--CCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeec------CCCCCcCCcccCCCC
Q 038861 986 SLEVIAISYLENLKSLPAGLH--NLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGY------CENLKALPNCMHNLT 1057 (1165)
Q Consensus 986 ~L~~L~L~~n~~~~~~p~~~~--~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~------n~~~~~~~~~~~~l~ 1057 (1165)
+|+.|+|++|.+. .+|..+. .+++|+.|+|++|.+.+ +|..+..+++|+.|+|++ |.+.+.+|..|.+++
T Consensus 729 ~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~ 806 (876)
T 4ecn_A 729 LLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806 (876)
T ss_dssp GCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred CccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCC
Confidence 3444444444443 4455554 56666666666666555 455566666666666654 777888888888899
Q ss_pred CCceeeeccCCCCcccCCCCCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecC
Q 038861 1058 SLLHLEIGWCRSLVSFPEDGFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGG 1115 (1165)
Q Consensus 1058 ~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 1115 (1165)
+|+.|+|++|++ +.+|.. ..++|+.|++++|++...-+ ..+.....+..+.+.+|
T Consensus 807 ~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l~~i~~-~~~~~~~~~~~~~L~~n 861 (876)
T 4ecn_A 807 SLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPNISIDV-TSVCPYIEAGMYVLLYD 861 (876)
T ss_dssp SCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTTCEEEC-GGGHHHHHTTCCEEECC
T ss_pred CCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCCCccCh-HHccccccchheeecCC
Confidence 999999999988 778776 33688889998888865322 22433334455555554
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.98 E-value=4.4e-32 Score=322.29 Aligned_cols=81 Identities=19% Similarity=0.172 Sum_probs=65.3
Q ss_pred eeeccCccccccccccccCcccccccccCCCCccccC-cccccCCCccEEeccCcchhccccccccCCCCcceeeccCCC
Q 038861 391 VFSLWGYCNIFNLPNEIGNLRHLRFLNLSGTNIQILP-ESINSLYNLHTILLEDCRRLKKLCNDMGNLTKLHHLRNSNVH 469 (1165)
Q Consensus 391 ~l~l~~~~~l~~lp~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 469 (1165)
+++++++ .++.+|..+. ++|++|++++|.+..+| ..+.++++|++|++++|......|..|+++++|++|++++|.
T Consensus 4 ~l~ls~n-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 4 LVDRSKN-GLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp EEECTTS-CCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred eEecCCC-Cccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 6788888 7888888776 88889999998888775 578888889999998887777778888888888888888887
Q ss_pred CCCCCC
Q 038861 470 SLGEMP 475 (1165)
Q Consensus 470 ~~~~~p 475 (1165)
+..+|
T Consensus 81 -l~~lp 85 (520)
T 2z7x_B 81 -LVKIS 85 (520)
T ss_dssp -CCEEE
T ss_pred -eeecC
Confidence 33444
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.98 E-value=1e-31 Score=322.09 Aligned_cols=98 Identities=21% Similarity=0.161 Sum_probs=70.0
Q ss_pred eeeccCccccccc-cccccCcccccccccCCCCccccC-cccccCCCccEEeccCcchhccccccccCCCCcceeeccCC
Q 038861 391 VFSLWGYCNIFNL-PNEIGNLRHLRFLNLSGTNIQILP-ESINSLYNLHTILLEDCRRLKKLCNDMGNLTKLHHLRNSNV 468 (1165)
Q Consensus 391 ~l~l~~~~~l~~l-p~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~ 468 (1165)
+|+++++ .+..+ |..|+++++|++|++++|.+..+| ..|+++++|++|++++|......|..|+++++|++|++++|
T Consensus 30 ~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 108 (549)
T 2z81_A 30 SLDLSFN-KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108 (549)
T ss_dssp EEECCSS-CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC
T ss_pred EEECcCC-ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC
Confidence 6677777 66665 456778888888888888877654 56778888888888877666555556788888888888887
Q ss_pred CCCC-CCCCCcccccccceece
Q 038861 469 HSLG-EMPKGFGKLTCLLTLGR 489 (1165)
Q Consensus 469 ~~~~-~~p~~i~~L~~L~~L~~ 489 (1165)
.+.. ..|..++.+++|++|..
T Consensus 109 ~l~~~~~~~~~~~l~~L~~L~L 130 (549)
T 2z81_A 109 PYQTLGVTSLFPNLTNLQTLRI 130 (549)
T ss_dssp CCSSSCSSCSCTTCTTCCEEEE
T ss_pred cccccchhhhhhccCCccEEEC
Confidence 7443 34566777777777743
No 23
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.98 E-value=6.6e-32 Score=324.91 Aligned_cols=300 Identities=24% Similarity=0.351 Sum_probs=227.4
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcch-hccCC-ceEEEEEcCCCCHHHHHHHH--
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRV-RRHFE-IKAWTFVSEDFDVFRVTKSI-- 76 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~-~~~f~-~~~w~~~~~~~~~~~~~~~i-- 76 (1165)
|||++++++|.+++... .++.++|+|+||||+||||||++++++.++ ..+|+ .++|++++.. +...+...+
T Consensus 127 vGR~~~l~~L~~~L~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~ 201 (591)
T 1z6t_A 127 VTRKKLVNAIQQKLSKL----KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQN 201 (591)
T ss_dssp CCCHHHHHHHHHHHTTS----TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhcc----cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHH
Confidence 79999999999999643 235789999999999999999999987665 78895 7899998765 333333333
Q ss_pred -HHhccCC----CCCCCCHHHHHHHHHHHhcC--ceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCchHHHHh
Q 038861 77 -LMSISNV----TVNDNDLNSLQEKLEKELIK--KKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRVVAER 149 (1165)
Q Consensus 77 -~~~l~~~----~~~~~~~~~~~~~l~~~l~~--~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~~~~~ 149 (1165)
+..++.. .....+.+.....++..+.+ +++||||||+|+. ..++ . .++|++||||||++.+...
T Consensus 202 l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~----~---l~~~~~ilvTsR~~~~~~~ 272 (591)
T 1z6t_A 202 LCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLK----A---FDSQCQILLTTRDKSVTDS 272 (591)
T ss_dssp HHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHH----T---TCSSCEEEEEESCGGGGTT
T ss_pred HHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHHH----H---hcCCCeEEEECCCcHHHHh
Confidence 3344321 12345566777788887765 7899999999763 2222 2 2578999999999987755
Q ss_pred hcccceeeC---CCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHhhhcCCCChhHHHHHHhc
Q 038861 150 VGSVREYPL---GELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLGGLLRGKHDPKDWEIVLNA 226 (1165)
Q Consensus 150 ~~~~~~~~l---~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~~~~ 226 (1165)
+. ...+++ ++|+++||+++|...++... +...+.+.+|+++|+|+|+||.++|++++.+. ..|...++.
T Consensus 273 ~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~-----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~ 344 (591)
T 1z6t_A 273 VM-GPKYVVPVESSLGKEKGLEILSLFVNMKK-----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQ 344 (591)
T ss_dssp CC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG-----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHH
T ss_pred cC-CCceEeecCCCCCHHHHHHHHHHHhCCCc-----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHH
Confidence 43 234444 58999999999999875421 22236789999999999999999999998763 367766554
Q ss_pred ccccc--------CCCCCChhHHHHhccccCcHHHHhHhhhhcCCCCCCccChHHHHHHHHHcCCcccccCcccHHHHHH
Q 038861 227 DVWDF--------ADDGCDIIPALKVSYRFLPPQLKQCFAYCSLFPKDYEFEEEEIILLWTAEGFLDQECDGRKMEELGR 298 (1165)
Q Consensus 227 ~~~~~--------~~~~~~~~~~l~~sy~~L~~~~k~~fl~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~ 298 (1165)
..... ......+..++..||+.|+++.|.||+++|+||+++.|+.+.+...|.++ .+.+.
T Consensus 345 l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~ 412 (591)
T 1z6t_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVE 412 (591)
T ss_dssp HHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHH
T ss_pred HHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHH
Confidence 32111 11123688899999999999999999999999999999999999988432 23477
Q ss_pred HHHHHHHHcCccccccC-CCCeEEEehHHHHHHHHhc
Q 038861 299 EFVRELHSRSLFHQSSK-DASRFVMHSLINDLARWAA 334 (1165)
Q Consensus 299 ~~l~~L~~~~li~~~~~-~~~~~~~H~li~~~~~~~~ 334 (1165)
.++++|++++|+....+ ...+|.||+++|++++...
T Consensus 413 ~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 413 DILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 89999999999986432 3458999999999999774
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=1.5e-31 Score=322.59 Aligned_cols=286 Identities=16% Similarity=0.172 Sum_probs=166.6
Q ss_pred CcCcceEEEEeeCCCCCCc--CcCCCCCCceeEEeEcccCCCCCCCCCCCCCCCceeeecCCCCceEeCccccCCCCccC
Q 038861 569 YQDVQELTITGYGGPKFPI--WLGDSSFSKLVRLKFEHCGTSTSLPSVGQLPFLKELVISGMGRVKSVGSEFYGSSCSVP 646 (1165)
Q Consensus 569 ~~~L~~L~l~~~~~~~~p~--~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 646 (1165)
+++|+.|++++|.+..+|. .+.. +++|+.|++++|.+.+.+|.++.+++|++|++++|... .+|..+..
T Consensus 304 l~~L~~L~L~~n~l~~ip~~~~l~~--l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l~~------ 374 (636)
T 4eco_A 304 GEKIQIIYIGYNNLKTFPVETSLQK--MKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCG------ 374 (636)
T ss_dssp GGTCCEEECCSSCCSSCCCHHHHTT--CTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTTSEE------
T ss_pred CCCCCEEECCCCcCCccCchhhhcc--CCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccHhhhh------
Confidence 3667777777776666666 5543 66677777777766655556666666667766666433 44433322
Q ss_pred CCCcceeeccccccccccccCCCCCcccCcCCc-cceeeecCCcccccCCCccccccceEEeecccccccccCCCCCceE
Q 038861 647 FPSLETLYFANMQEWEEWIPFGSGQEVDEVFPK-LRKLSLFSCSKLQGALPKRLLLLERLVIQSCKQLLVTIQCLPALSE 725 (1165)
Q Consensus 647 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~~~p~~l~~L~~L~~~~~~~~~~~~~~l~~L~~ 725 (1165)
+++ |++|++++ ++++ .+|..+. ...+++|+.
T Consensus 375 ------------------------------l~~~L~~L~Ls~-N~l~-~lp~~~~----------------~~~l~~L~~ 406 (636)
T 4eco_A 375 ------------------------------FTEQVENLSFAH-NKLK-YIPNIFD----------------AKSVSVMSA 406 (636)
T ss_dssp ------------------------------ECTTCCEEECCS-SCCS-SCCSCCC----------------TTCSSCEEE
T ss_pred ------------------------------hcccCcEEEccC-CcCc-ccchhhh----------------hcccCccCE
Confidence 444 55555555 3444 4443111 011235666
Q ss_pred EEEecCCcccccCcccccccccccccccceeEeccCCCccccCCcCceEecCCCCccccchhhcCCCCcceEEEcCCCCc
Q 038861 726 LQIKGCKRVVLSSPMDLSSLKSVLLGEMANEVISGCPQLLSLVTEDDLELSNCKGLTKLPQALLTLSSLRELRISGCASL 805 (1165)
Q Consensus 726 L~l~~~~~l~~~~~~~~~~l~~l~~~~l~~~~i~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 805 (1165)
|++++|. +....|..+... ......+++|++|++++|.+....+..+..+++|++|++++|...
T Consensus 407 L~Ls~N~-l~~~~p~~l~~~---------------~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 407 IDFSYNE-IGSVDGKNFDPL---------------DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp EECCSSC-TTTTTTCSSCTT---------------CSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred EECcCCc-CCCcchhhhccc---------------ccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 6665532 222222222100 000113346677777777766433344566899999999998665
Q ss_pred cccCCCCCc---------ccccEEEeccCCCCCCChHHHhhcCccccccccccceeecccccccCCchhhhcCCCCCcce
Q 038861 806 VSFPQAALP---------SQLRTFKIEHCNALESLPEAWMRNSNSSLQSLEIGTIEIEECNALESLPEAWMQDSSTSLES 876 (1165)
Q Consensus 806 ~~~~~~~~~---------~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~l~~l~~~~~~~~l~~L~~ 876 (1165)
.++...+. ++|++|++++|.+. .+|..+. ...+++|+.
T Consensus 471 -~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-------------------------------~~~l~~L~~ 517 (636)
T 4eco_A 471 -EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFR-------------------------------ATTLPYLVG 517 (636)
T ss_dssp -BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGS-------------------------------TTTCTTCCE
T ss_pred -CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhh-------------------------------hccCCCcCE
Confidence 55543332 28999999999855 5554321 013677888
Q ss_pred EEEeCCCCCccccccCCccccceEeeccCcCcccccCCcCccccCCCCccccccCCCCcccccccceeeccccccccccc
Q 038861 877 LNIDGCDSLTYIARIQLPPSLRRLIISDCYNLRTLTGDQGICSSRSGRTSLTSFSSENELPATLEQLEVRFCSNLAFLSR 956 (1165)
Q Consensus 877 L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~l~~~~~ 956 (1165)
|++++|........+..+
T Consensus 518 L~Ls~N~l~~ip~~~~~l-------------------------------------------------------------- 535 (636)
T 4eco_A 518 IDLSYNSFSKFPTQPLNS-------------------------------------------------------------- 535 (636)
T ss_dssp EECCSSCCSSCCCGGGGC--------------------------------------------------------------
T ss_pred EECCCCCCCCcChhhhcC--------------------------------------------------------------
Confidence 888876533211111111
Q ss_pred CCCCCCCccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcC
Q 038861 957 NGNLPQALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLT 1036 (1165)
Q Consensus 957 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 1036 (1165)
++|+.|++++|. ++++|.+.+.+|..+.++++|++|+|++|.+ +.+|..+. ++|+
T Consensus 536 -----~~L~~L~Ls~N~-----------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~ 590 (636)
T 4eco_A 536 -----STLKGFGIRNQR-----------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNIS 590 (636)
T ss_dssp -----SSCCEEECCSCB-----------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCC
T ss_pred -----CCCCEEECCCCc-----------------ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCC
Confidence 346666666653 3456667777888888888888888888886 66666655 6788
Q ss_pred eEEeecCCCCC
Q 038861 1037 KLTIGYCENLK 1047 (1165)
Q Consensus 1037 ~L~L~~n~~~~ 1047 (1165)
.|+|++|++..
T Consensus 591 ~L~Ls~N~l~~ 601 (636)
T 4eco_A 591 VLDIKDNPNIS 601 (636)
T ss_dssp EEECCSCTTCE
T ss_pred EEECcCCCCcc
Confidence 88888886654
No 25
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=2.7e-30 Score=314.67 Aligned_cols=377 Identities=15% Similarity=0.173 Sum_probs=258.1
Q ss_pred eEeccCC-CccccCCcCceEecCCCCcc-----------------ccchhhc--CCCCcceEEEcCCCCccccCC-CCCc
Q 038861 756 EVISGCP-QLLSLVTEDDLELSNCKGLT-----------------KLPQALL--TLSSLRELRISGCASLVSFPQ-AALP 814 (1165)
Q Consensus 756 ~~i~~~~-~l~~l~~L~~L~l~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~~l~~~~~-~~~~ 814 (1165)
|.+.++| .+..+++|+.|++++|.+.+ .+|..+. ++++|+.|++++|.....+|. ...+
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 5555565 46677888888888888776 2777766 888888888888876666663 3446
Q ss_pred ccccEEEeccCC-CCC-CChHHHhhc-----CccccccccccceeecccccccCCchhhhcCCCCCcceEEEeCCCCCcc
Q 038861 815 SQLRTFKIEHCN-ALE-SLPEAWMRN-----SNSSLQSLEIGTIEIEECNALESLPEAWMQDSSTSLESLNIDGCDSLTY 887 (1165)
Q Consensus 815 ~~L~~L~l~~~~-~~~-~~~~~~~~~-----~~~~L~~l~l~~~~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~ 887 (1165)
++|++|++++|+ +.. .+|..+... ..++|+.|++++|.+... |.......+++|+.|++++|... .
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~i------p~~~~l~~L~~L~~L~Ls~N~l~-~ 587 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF------PASASLQKMVKLGLLDCVHNKVR-H 587 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBC------CCHHHHTTCTTCCEEECTTSCCC-B
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCcc------CChhhhhcCCCCCEEECCCCCcc-c
Confidence 788888888887 444 466655332 234677777777766532 22111234778888888887755 5
Q ss_pred ccccCCccccceEeeccCcCcccccCCcCccccCCCCccccccCCCCcccccccceeecccccccccccCCCCC--CCcc
Q 038861 888 IARIQLPPSLRRLIISDCYNLRTLTGDQGICSSRSGRTSLTSFSSENELPATLEQLEVRFCSNLAFLSRNGNLP--QALK 965 (1165)
Q Consensus 888 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~--~~L~ 965 (1165)
++.+..+++|+.|++++|. +..++........ .++.|.+..+.- ..++...... ++|+
T Consensus 588 lp~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~------------------~L~~L~Ls~N~L-~~lp~~~~~~~~~~L~ 647 (876)
T 4ecn_A 588 LEAFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTD------------------QVEGLGFSHNKL-KYIPNIFNAKSVYVMG 647 (876)
T ss_dssp CCCCCTTSEESEEECCSSC-CSCCCTTSCEECT------------------TCCEEECCSSCC-CSCCSCCCTTCSSCEE
T ss_pred chhhcCCCcceEEECcCCc-cccchHHHhhccc------------------cCCEEECcCCCC-CcCchhhhccccCCCC
Confidence 5677777888888888875 3344433221111 144444444331 1111111111 3499
Q ss_pred EEEEcCCCCchhhhhhc------ccCccceeeeecccccccCCcc-cCCCCCCCEEEEeCCCCCccccCCCCC-------
Q 038861 966 YLEVSYCSKLESLAERL------DNTSLEVIAISYLENLKSLPAG-LHNLHHLQELKVYGCPNLESFPEGGLP------- 1031 (1165)
Q Consensus 966 ~L~l~~~~~~~~~~~~~------~~~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~------- 1031 (1165)
.|++++|.+.+.+|... ..++|+.|++++|.+. .+|.. +..+++|++|+|++|.+. .+|.....
T Consensus 648 ~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~ 725 (876)
T 4ecn_A 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYK 725 (876)
T ss_dssp EEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCT
T ss_pred EEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccccccc
Confidence 99999998877665433 2368999999999997 55655 458999999999999977 55554333
Q ss_pred -CCCcCeEEeecCCCCCcCCcccC--CCCCCceeeeccCCCCcccCCC-CCCCCcceEEEec------CCCCCccccccc
Q 038861 1032 -STKLTKLTIGYCENLKALPNCMH--NLTSLLHLEIGWCRSLVSFPED-GFPTNLESLEVHD------LKISKPLFEWGL 1101 (1165)
Q Consensus 1032 -l~~L~~L~L~~n~~~~~~~~~~~--~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~------n~~~~~~~~~~~ 1101 (1165)
+++|+.|+|++|.+. .+|..+. .+++|+.|+|++|++.+ +|.. ..+++|+.|++++ |++.+.+|.. +
T Consensus 726 nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~-l 802 (876)
T 4ecn_A 726 NTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG-I 802 (876)
T ss_dssp TGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT-G
T ss_pred ccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHH-H
Confidence 238999999999987 5787786 99999999999999966 6765 8899999999987 6677766554 8
Q ss_pred ccCCCCcEEEEecCCCCcccCCCCCCcccEEEecCCCCcccH-----HHhhhcCC---ccceEeecCCCCCC
Q 038861 1102 NKFSSLRELQITGGCPVLLSSPWFPASLTVLHISYMPNLESL-----SLIVENLT---SLEILILCKCPKLD 1165 (1165)
Q Consensus 1102 ~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~l~~l-----~~~~~~l~---~L~~L~l~~c~~l~ 1165 (1165)
.++++|+.|+|++|.+..++.. +.++|+.|+|++|+....- |....... .-...++.+|+.|+
T Consensus 803 ~~L~~L~~L~Ls~N~L~~Ip~~-l~~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~~L~ 873 (876)
T 4ecn_A 803 TTCPSLIQLQIGSNDIRKVDEK-LTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALG 873 (876)
T ss_dssp GGCSSCCEEECCSSCCCBCCSC-CCSSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred hcCCCCCEEECCCCCCCccCHh-hcCCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCCCcc
Confidence 9999999999999988666554 5579999999998754321 22222222 22344778998763
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=1.6e-29 Score=310.10 Aligned_cols=154 Identities=15% Similarity=0.094 Sum_probs=105.4
Q ss_pred ccCCCCccccCcccccCCCccEEeccCcchhccccccccCCCCcceeeccCCCCCCCCCCCcccccccceeceEEecccc
Q 038861 417 NLSGTNIQILPESINSLYNLHTILLEDCRRLKKLCNDMGNLTKLHHLRNSNVHSLGEMPKGFGKLTCLLTLGRFVVGKVS 496 (1165)
Q Consensus 417 ~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~ 496 (1165)
+=++-+++.+|..+. .++++|||++|...+..|.+|.++++|++|++++|.+....|..|..|++|++|.
T Consensus 37 ~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~-------- 106 (635)
T 4g8a_A 37 QCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI-------- 106 (635)
T ss_dssp ECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE--------
T ss_pred ECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEE--------
Confidence 334556788888664 4799999999876666667899999999999999984333344578888888772
Q ss_pred CCCccccCCccccccceeeccccCCCchhhhhHhhcCCCcCccceEeeeccccccCccchhhHHhhhccCCCCcCcceEE
Q 038861 497 GSGLRELKSLTHLQETLRISKLENVKDVCDACEAQLNNKVNLKALLLEWSIWHVRNLDQCEFETRVLSMLKPYQDVQELT 576 (1165)
Q Consensus 497 ~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~l~~~~~L~~L~ 576 (1165)
++.|.+.......|..+++|+.|+
T Consensus 107 --------------------------------------------------------Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 107 --------------------------------------------------------LTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp --------------------------------------------------------CTTCCCCEECGGGGTTCTTCCEEE
T ss_pred --------------------------------------------------------ccCCcCCCCCHHHhcCCCCCCEEE
Confidence 223333333344566677888888
Q ss_pred EEeeCCCCCCcCcCCCCCCceeEEeEcccCCCCC-CC-CCCCCCCCceeeecCCCCceEeCcc
Q 038861 577 ITGYGGPKFPIWLGDSSFSKLVRLKFEHCGTSTS-LP-SVGQLPFLKELVISGMGRVKSVGSE 637 (1165)
Q Consensus 577 l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~-l~-~l~~l~~L~~L~l~~~~~~~~~~~~ 637 (1165)
+++|.+..+|.... ..+++|+.|++++|.+... .| .++.+++|++|++++|...+..+..
T Consensus 131 Ls~N~l~~l~~~~~-~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 192 (635)
T 4g8a_A 131 AVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192 (635)
T ss_dssp CTTSCCCCSTTCCC-TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CCCCcCCCCChhhh-hcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence 88877777765432 1477788888888776542 33 3667777888888777655444433
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=6.9e-31 Score=314.23 Aligned_cols=91 Identities=20% Similarity=0.164 Sum_probs=74.3
Q ss_pred eeeccCccccccccccccCcccccccccCCCCccccC-cccccCCCccEEeccCcchhccccccccCCCCcceeeccCCC
Q 038861 391 VFSLWGYCNIFNLPNEIGNLRHLRFLNLSGTNIQILP-ESINSLYNLHTILLEDCRRLKKLCNDMGNLTKLHHLRNSNVH 469 (1165)
Q Consensus 391 ~l~l~~~~~l~~lp~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 469 (1165)
+++++++ +++.+|..+. ++|++|++++|.|..+| ..+.++++|++|++++|......|..|.++++|++|++++|.
T Consensus 35 ~l~ls~~-~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 111 (562)
T 3a79_B 35 MVDYSNR-NLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111 (562)
T ss_dssp EEECTTS-CCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EEEcCCC-CCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc
Confidence 6788888 8888998764 89999999999999776 588999999999999988777778889999999999999998
Q ss_pred CCCCCCCCccccccccee
Q 038861 470 SLGEMPKGFGKLTCLLTL 487 (1165)
Q Consensus 470 ~~~~~p~~i~~L~~L~~L 487 (1165)
+..+|.. .+++|++|
T Consensus 112 -l~~lp~~--~l~~L~~L 126 (562)
T 3a79_B 112 -LQNISCC--PMASLRHL 126 (562)
T ss_dssp -CCEECSC--CCTTCSEE
T ss_pred -CCccCcc--ccccCCEE
Confidence 4566654 45555444
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=2e-29 Score=289.55 Aligned_cols=112 Identities=26% Similarity=0.326 Sum_probs=47.7
Q ss_pred CCccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEee
Q 038861 962 QALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIG 1041 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 1041 (1165)
++|+.|++++|.+.+ ++. ..++|++|++++|.+.+ +|.. +++|++|++++|.+.+ +|. .+++|++|+++
T Consensus 297 ~~L~~L~l~~N~l~~-i~~--~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~ 365 (454)
T 1jl5_A 297 PNLYYLNASSNEIRS-LCD--LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVE 365 (454)
T ss_dssp TTCCEEECCSSCCSE-ECC--CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECC
T ss_pred CcCCEEECcCCcCCc-ccC--CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECC
Confidence 345555555554332 111 01456666666666654 4433 4677777777776553 444 35677777777
Q ss_pred cCCCCC--cCCcccCCCCCCceeeeccCCCCcccCCCCCCCCcceEEEecCCCCC
Q 038861 1042 YCENLK--ALPNCMHNLTSLLHLEIGWCRSLVSFPEDGFPTNLESLEVHDLKISK 1094 (1165)
Q Consensus 1042 ~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~ 1094 (1165)
+|.+.+ .+|..+.. ++.|...+.+|. .+++|+.|++++|++.+
T Consensus 366 ~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~--~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 366 YNPLREFPDIPESVED--------LRMNSHLAEVPE--LPQNLKQLHVETNPLRE 410 (454)
T ss_dssp SSCCSSCCCCCTTCCE--------EECCC--------------------------
T ss_pred CCCCCcCCCChHHHHh--------hhhccccccccc--ccCcCCEEECCCCcCCc
Confidence 777666 44544432 233444455544 34666666666666654
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=2e-28 Score=292.95 Aligned_cols=463 Identities=16% Similarity=0.058 Sum_probs=290.3
Q ss_pred CcceEEEEeeCCCCCCcCcCCCCCCceeEEeEcccCCCCCCC-CCCCCCCCceeeecCCCCceEeCccccCCCCccCCCC
Q 038861 571 DVQELTITGYGGPKFPIWLGDSSFSKLVRLKFEHCGTSTSLP-SVGQLPFLKELVISGMGRVKSVGSEFYGSSCSVPFPS 649 (1165)
Q Consensus 571 ~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 649 (1165)
..+.++++++....+|..+. ++++.|++++|.+....+ .+..+++|++|++++|......+..+.+ +++
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~----~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~ 101 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLP----PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF------NQD 101 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSC----TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTT------CTT
T ss_pred CCcEEEcCCCCCccCCCCCC----CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCC------CCC
Confidence 34789999999999997653 689999999999977765 6999999999999999776666666665 788
Q ss_pred cceeeccccccccccccCCCCCcccCcCCccceeeecCCcccccCCCccccccceEEeecccccccccCCCCCceEEEEe
Q 038861 650 LETLYFANMQEWEEWIPFGSGQEVDEVFPKLRKLSLFSCSKLQGALPKRLLLLERLVIQSCKQLLVTIQCLPALSELQIK 729 (1165)
Q Consensus 650 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~l~ 729 (1165)
|++|+++++. +..+ +.. .+++|++|++++ +++++ +|. +..+..+++|+.|+++
T Consensus 102 L~~L~Ls~N~-l~~l-p~~-------~l~~L~~L~Ls~-N~l~~-l~~----------------p~~~~~l~~L~~L~L~ 154 (562)
T 3a79_B 102 LEYLDVSHNR-LQNI-SCC-------PMASLRHLDLSF-NDFDV-LPV----------------CKEFGNLTKLTFLGLS 154 (562)
T ss_dssp CCEEECTTSC-CCEE-CSC-------CCTTCSEEECCS-SCCSB-CCC----------------CGGGGGCTTCCEEEEE
T ss_pred CCEEECCCCc-CCcc-Ccc-------ccccCCEEECCC-CCccc-cCc----------------hHhhcccCcccEEecC
Confidence 8888888864 3322 211 378888888888 55652 220 1256677888888888
Q ss_pred cCCcccccCcccccccccccccccceeEeccCCCccccCCc--CceEecCCCC--ccccchhhcCCC--CcceEEEcCCC
Q 038861 730 GCKRVVLSSPMDLSSLKSVLLGEMANEVISGCPQLLSLVTE--DDLELSNCKG--LTKLPQALLTLS--SLRELRISGCA 803 (1165)
Q Consensus 730 ~~~~l~~~~~~~~~~l~~l~~~~l~~~~i~~~~~l~~l~~L--~~L~l~~~~~--~~~~~~~~~~l~--~L~~L~l~~~~ 803 (1165)
+|. +.. ..+..++.+ ++|++++|.+ .+..|..+..+. .| .+++++|.
T Consensus 155 ~n~-l~~-------------------------~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~ 207 (562)
T 3a79_B 155 AAK-FRQ-------------------------LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNS 207 (562)
T ss_dssp CSB-CCT-------------------------TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSS
T ss_pred CCc-ccc-------------------------CchhhhhhceeeEEEeecccccccccCcccccccCcceE-EEEecCcc
Confidence 743 211 112222333 6777777776 566666665544 22 44556665
Q ss_pred CccccCC--CCCcccccEEEeccCCCCC-CChHHHh-hcCccccccccccceeecccccccCCchhhhcCCCCCcceEEE
Q 038861 804 SLVSFPQ--AALPSQLRTFKIEHCNALE-SLPEAWM-RNSNSSLQSLEIGTIEIEECNALESLPEAWMQDSSTSLESLNI 879 (1165)
Q Consensus 804 ~l~~~~~--~~~~~~L~~L~l~~~~~~~-~~~~~~~-~~~~~~L~~l~l~~~~l~~~~~l~~l~~~~~~~~l~~L~~L~l 879 (1165)
....++. ...+++|+.+++++|.... .++.... -.....++.+++..+.+.+... ..++.. ...++|++|++
T Consensus 208 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~-~~~~~~---~~~~~L~~L~l 283 (562)
T 3a79_B 208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS-VKLFQF---FWPRPVEYLNI 283 (562)
T ss_dssp CCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHH-HHHHHH---HTTSSEEEEEE
T ss_pred chhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHH-HHHHHh---hhcccccEEEE
Confidence 4443332 1234677777777764110 0111000 0112344555555544433211 111111 01246677777
Q ss_pred eCCCCCccccccC---CccccceEeeccCcCcccccCCcCccccCCCCccccccCCCCcccc-cccceeecccccccccc
Q 038861 880 DGCDSLTYIARIQ---LPPSLRRLIISDCYNLRTLTGDQGICSSRSGRTSLTSFSSENELPA-TLEQLEVRFCSNLAFLS 955 (1165)
Q Consensus 880 ~~~~~l~~~~~~~---~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~l~~l~~~~~~~l~~~~ 955 (1165)
++|.....++... ..++|+.|.+.++..-. + .+|. .+..+ ..
T Consensus 284 ~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~-~-----------------------~~p~~~~~~~----------~~ 329 (562)
T 3a79_B 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQV-F-----------------------LFSKEALYSV----------FA 329 (562)
T ss_dssp EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECC-C-----------------------SSCHHHHHHH----------HH
T ss_pred eccEeeccccchhhhcccccchheehhhcccce-e-----------------------ecChhhhhhh----------hc
Confidence 7665443332110 01333333333321000 0 0000 00000 00
Q ss_pred cCCCCCCCccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCc--cccCCCCCCC
Q 038861 956 RNGNLPQALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLE--SFPEGGLPST 1033 (1165)
Q Consensus 956 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~l~ 1033 (1165)
..+|+.|++++|...... .....++|++|++++|.+.+.+|..+.++++|++|++++|.+.+ .+|..+..++
T Consensus 330 -----~~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~ 403 (562)
T 3a79_B 330 -----EMNIKMLSISDTPFIHMV-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS 403 (562)
T ss_dssp -----TCCCSEEEEESSCCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCT
T ss_pred -----cCcceEEEccCCCccccc-CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCC
Confidence 035888888888653221 11233889999999999988888889999999999999998776 4456788889
Q ss_pred CcCeEEeecCCCCCcCC-cccCCCCCCceeeeccCCCCcccCCCCCCCCcceEEEecCCCCCcccccccccCCCCcEEEE
Q 038861 1034 KLTKLTIGYCENLKALP-NCMHNLTSLLHLEIGWCRSLVSFPEDGFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQI 1112 (1165)
Q Consensus 1034 ~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 1112 (1165)
+|+.|++++|.+.+.+| ..+.++++|+.|++++|++.+.+|.. .+++|+.|++++|++.. ++.. +.++++|++|++
T Consensus 404 ~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~~L~~L~L~~N~l~~-ip~~-~~~l~~L~~L~L 480 (562)
T 3a79_B 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC-LPPKVKVLDLHNNRIMS-IPKD-VTHLQALQELNV 480 (562)
T ss_dssp TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSS-CCTTCSEEECCSSCCCC-CCTT-TTSSCCCSEEEC
T ss_pred CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhh-hcCcCCEEECCCCcCcc-cChh-hcCCCCCCEEEC
Confidence 99999999999887454 45788899999999999987766653 22789999999998874 5554 458999999999
Q ss_pred ecCCCCcccCCC--CCCcccEEEecCCCCcccHH
Q 038861 1113 TGGCPVLLSSPW--FPASLTVLHISYMPNLESLS 1144 (1165)
Q Consensus 1113 ~~n~~~~~~~~~--~~~~L~~L~l~~~~~l~~l~ 1144 (1165)
++|....++... -.++|+.|++++|+.....+
T Consensus 481 ~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 481 ASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 998877665532 34688889999887655444
No 30
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=3.7e-28 Score=279.02 Aligned_cols=156 Identities=21% Similarity=0.212 Sum_probs=48.7
Q ss_pred CCccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCC-CCCCEEEEeCCCCCccccCCCCCCCCcCeEEe
Q 038861 962 QALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNL-HHLQELKVYGCPNLESFPEGGLPSTKLTKLTI 1040 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l-~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L 1040 (1165)
++|+.|++++|.+.+ ++.. .++|+.|++++|.+.+. + .+ ++|++|++++|.+.+ +|.. +++|++|++
T Consensus 277 ~~L~~L~ls~N~l~~-l~~~--~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L 344 (454)
T 1jl5_A 277 QSLTFLDVSENIFSG-LSEL--PPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIA 344 (454)
T ss_dssp TTCCEEECCSSCCSE-ESCC--CTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEEC
T ss_pred CcCCEEECcCCccCc-ccCc--CCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---CCcCCEEEC
Confidence 345666666654333 1110 14555555555555431 1 12 355555555555443 3322 345555555
Q ss_pred ecCCCCCcCCcccCCCCCCceeeeccCCCCc--ccCCCCCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCCCC
Q 038861 1041 GYCENLKALPNCMHNLTSLLHLEIGWCRSLV--SFPEDGFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCPV 1118 (1165)
Q Consensus 1041 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 1118 (1165)
++|.+.. +|. .+++|++|++++|++.+ .+|. .+.. ++.|.+.+.++. .+++|+.|++++|...
T Consensus 345 ~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~-----~l~~--L~~n~~~~~i~~----~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 345 SFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPE-----SVED--LRMNSHLAEVPE----LPQNLKQLHVETNPLR 409 (454)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCT-----TCCE--EECCC---------------------------
T ss_pred CCCcccc-ccc---hhhhccEEECCCCCCCcCCCChH-----HHHh--hhhccccccccc----ccCcCCEEECCCCcCC
Confidence 5555443 333 34555555555555533 2222 2222 223444333322 2378888888887655
Q ss_pred cccCCCCCCcccEEEecCCCCcccHHHh
Q 038861 1119 LLSSPWFPASLTVLHISYMPNLESLSLI 1146 (1165)
Q Consensus 1119 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~ 1146 (1165)
.+ +.+|++++.|.+.+|.....++..
T Consensus 410 ~~--~~iP~sl~~L~~~~~~~~~~~~~~ 435 (454)
T 1jl5_A 410 EF--PDIPESVEDLRMNSERVVDPYEFA 435 (454)
T ss_dssp ----------------------------
T ss_pred cc--ccchhhHhheeCcCcccCCccccC
Confidence 43 345778888888877655544443
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=2.1e-27 Score=277.08 Aligned_cols=134 Identities=16% Similarity=0.024 Sum_probs=74.5
Q ss_pred CCccEEEEcCCCCchhhhhhccc-CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEe
Q 038861 962 QALKYLEVSYCSKLESLAERLDN-TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTI 1040 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L 1040 (1165)
++|+.|++++|.+.+..|..+.. ++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+..+++|++|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 34666666666555544444433 55666666666555555555555566666666666555555555555556666666
Q ss_pred ecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceEEEecCCCCCc
Q 038861 1041 GYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESLEVHDLKISKP 1095 (1165)
Q Consensus 1041 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~ 1095 (1165)
++|.+.+..|..|.++++|++|++++|++.+..+.. ..+++|+.|++++|++.+.
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence 665555555555555566666666655553322222 4455555556655555543
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=1.9e-26 Score=265.02 Aligned_cols=62 Identities=18% Similarity=0.154 Sum_probs=50.5
Q ss_pred cccccCcccccccccCCCCccccCcccccCCCccEEeccCcchhccccccccCCCCcceeeccCCC
Q 038861 404 PNEIGNLRHLRFLNLSGTNIQILPESINSLYNLHTILLEDCRRLKKLCNDMGNLTKLHHLRNSNVH 469 (1165)
Q Consensus 404 p~~~~~l~~Lr~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 469 (1165)
+..++++++|++|++++|.++.+| .++.+++|++|++++|...+ +| ++.+++|++|++++|.
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~ 96 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNK 96 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSC
T ss_pred ccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCC
Confidence 346778889999999999888887 68889999999998876444 44 8888888888888887
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=2.5e-26 Score=268.01 Aligned_cols=366 Identities=14% Similarity=0.098 Sum_probs=241.8
Q ss_pred CccceeeecCCcccccCCCccccccceEEeecccccccccCCCCCceEEEEecCCcccccCcccccccccccccccceeE
Q 038861 678 PKLRKLSLFSCSKLQGALPKRLLLLERLVIQSCKQLLVTIQCLPALSELQIKGCKRVVLSSPMDLSSLKSVLLGEMANEV 757 (1165)
Q Consensus 678 ~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~~~l~~~~ 757 (1165)
++|++|++++ +.+++..|. .+..+++|+.|++++|.......+..|..++.|+.+++++|.
T Consensus 30 ~~l~~L~Ls~-n~i~~~~~~------------------~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 30 AHVNYVDLSL-NSIAELNET------------------SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp TTCCEEECCS-SCCCEECTT------------------TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred CccCEEEecC-CccCcCChh------------------HhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 5667777766 455533332 466677778888877554334455667777777777777776
Q ss_pred eccC--CCccccCCcCceEecCCCCccccchh--hcCCCCcceEEEcCCCCccccCC--CCCcccccEEEeccCCCCCCC
Q 038861 758 ISGC--PQLLSLVTEDDLELSNCKGLTKLPQA--LLTLSSLRELRISGCASLVSFPQ--AALPSQLRTFKIEHCNALESL 831 (1165)
Q Consensus 758 i~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~ 831 (1165)
+... ..+..+++|++|++++|.+.+..+.. +..+++|++|++++|......+. ...+++|++|++++|.+....
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC
Confidence 6554 24667777777777777766554443 67777777777777755444343 334577777777777766655
Q ss_pred hHHHhhcCccccccccccceeecccccccCCchh-hhcCCCCCcceEEEeCCCCCccccc----cCCccccceEeeccCc
Q 038861 832 PEAWMRNSNSSLQSLEIGTIEIEECNALESLPEA-WMQDSSTSLESLNIDGCDSLTYIAR----IQLPPSLRRLIISDCY 906 (1165)
Q Consensus 832 ~~~~~~~~~~~L~~l~l~~~~l~~~~~l~~l~~~-~~~~~l~~L~~L~l~~~~~l~~~~~----~~~~~~L~~L~l~~~~ 906 (1165)
+..+.......++.++++.+.+.+......-... .....+++|++|++++|......+. ....++|+.|++++|.
T Consensus 171 ~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 250 (455)
T 3v47_A 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250 (455)
T ss_dssp TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCT
T ss_pred hhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccc
Confidence 5544443334566666666555443321100000 0001245666666666654433221 1122455666655553
Q ss_pred CcccccCCcCccccCCCCccccccCCCCcccccccceeecccccccccccCCCCCCCccEEEEcCCCCchhhhhhcccCc
Q 038861 907 NLRTLTGDQGICSSRSGRTSLTSFSSENELPATLEQLEVRFCSNLAFLSRNGNLPQALKYLEVSYCSKLESLAERLDNTS 986 (1165)
Q Consensus 907 ~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 986 (1165)
....... . ..+.. ...........++
T Consensus 251 ~~~~~~~----------------------------~-------------------~~~~~-------~~~~~~~~~~~~~ 276 (455)
T 3v47_A 251 NMGSSFG----------------------------H-------------------TNFKD-------PDNFTFKGLEASG 276 (455)
T ss_dssp TTSCCTT----------------------------C-------------------CSSCC-------CCTTTTGGGTTSC
T ss_pred ccccccc----------------------------h-------------------hhhcc-------CcccccccccccC
Confidence 1110000 0 00000 0000000112278
Q ss_pred cceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeecc
Q 038861 987 LEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGW 1066 (1165)
Q Consensus 987 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 1066 (1165)
|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..|.++++|++|++++
T Consensus 277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 356 (455)
T 3v47_A 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY 356 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCS
T ss_pred ceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCC
Confidence 99999999999999999999999999999999999888888999999999999999999888888999999999999999
Q ss_pred CCCCcccCCC-CCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCCC
Q 038861 1067 CRSLVSFPED-GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCP 1117 (1165)
Q Consensus 1067 n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 1117 (1165)
|++.+..|.. ..+++|++|++++|++.+ +++..+..+++|+.|++++|..
T Consensus 357 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 357 NHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCB
T ss_pred CcccccChhhccccccccEEECCCCcccc-CCHhHhccCCcccEEEccCCCc
Confidence 9997776765 789999999999999986 4555688999999999998743
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=1.3e-25 Score=261.35 Aligned_cols=165 Identities=19% Similarity=0.100 Sum_probs=77.5
Q ss_pred CCccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEee
Q 038861 962 QALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIG 1041 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 1041 (1165)
++|+.|++++|...+ ++.....++|+.|++++|.+.+..| +..+++|++|++++|.+.+..+ +..+++|+.|+++
T Consensus 221 ~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~ 295 (466)
T 1o6v_A 221 TNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN 295 (466)
T ss_dssp TTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred CCCCEEECCCCCccc-chhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcC
Confidence 345555555554322 2222223555555555555544332 4455555555555555444332 4445555555555
Q ss_pred cCCCCCcCCcccCCCCCCceeeeccCCCCcccCCCCCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCCCCccc
Q 038861 1042 YCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPEDGFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCPVLLS 1121 (1165)
Q Consensus 1042 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 1121 (1165)
+|.+.+..+ +..+++|+.|++++|++.+..| ...+++|+.|++++|++.+. + .+.++++|+.|++++|......
T Consensus 296 ~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 296 ENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDV--S-SLANLTNINWLSAGHNQISDLT 369 (466)
T ss_dssp SSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCC--G-GGTTCTTCCEEECCSSCCCBCG
T ss_pred CCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCc--h-hhccCCCCCEEeCCCCccCccc
Confidence 555444322 4455555555555555533332 23445555555555555442 1 2455555555555554443322
Q ss_pred CCCCCCcccEEEecCC
Q 038861 1122 SPWFPASLTVLHISYM 1137 (1165)
Q Consensus 1122 ~~~~~~~L~~L~l~~~ 1137 (1165)
...-.++|+.|++++|
T Consensus 370 ~~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 370 PLANLTRITQLGLNDQ 385 (466)
T ss_dssp GGTTCTTCCEEECCCE
T ss_pred hhhcCCCCCEEeccCC
Confidence 2222344555555543
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=6.9e-25 Score=255.29 Aligned_cols=125 Identities=19% Similarity=0.111 Sum_probs=83.4
Q ss_pred CCccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEee
Q 038861 962 QALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIG 1041 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 1041 (1165)
++|+.|++++|.+.+..+ ....++|+.|++++|.+.+..+ +..+++|++|++++|.+.+..| +..+++|++|+++
T Consensus 265 ~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 265 TKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFY 339 (466)
T ss_dssp TTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECC
T ss_pred CCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECC
Confidence 346666666665443322 2333777777777777765433 6677777777777777666554 5567777777777
Q ss_pred cCCCCCcCCcccCCCCCCceeeeccCCCCcccCCCCCCCCcceEEEecCCCCC
Q 038861 1042 YCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPEDGFPTNLESLEVHDLKISK 1094 (1165)
Q Consensus 1042 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~ 1094 (1165)
+|.+.+. ..+.++++|+.|++++|++.+..| ...+++|+.|++++|++.+
T Consensus 340 ~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 340 NNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp SSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred CCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 7776654 357777777777777777765555 4567777777777777665
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=3.2e-24 Score=239.92 Aligned_cols=268 Identities=18% Similarity=0.157 Sum_probs=157.3
Q ss_pred EeccCCCccccCCcCceEecCCCCccccchhhcCCCCcceEEEcCCCCccccCCCCCcccccEEEeccCCCCCCChHHHh
Q 038861 757 VISGCPQLLSLVTEDDLELSNCKGLTKLPQALLTLSSLRELRISGCASLVSFPQAALPSQLRTFKIEHCNALESLPEAWM 836 (1165)
Q Consensus 757 ~i~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 836 (1165)
.+..++.+..+++|++|++++|.+... +. +..+++|++|++++|.. ..++....+++|++|++++|.+.. ++.
T Consensus 55 ~i~~~~~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i-~~~~~~~~l~~L~~L~l~~n~i~~-~~~--- 127 (347)
T 4fmz_A 55 KVASIQGIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKI-TDISALQNLTNLRELYLNEDNISD-ISP--- 127 (347)
T ss_dssp CCCCCTTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCC-CCCGGGTTCTTCSEEECTTSCCCC-CGG---
T ss_pred ccccchhhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcc-cCchHHcCCCcCCEEECcCCcccC-chh---
Confidence 344445555666667777777655433 32 66667777777776633 334444455666666666665322 211
Q ss_pred hcCccccccccccceeecccccccCCchhhhcCCCCCcceEEEeCCCCCccccccCCccccceEeeccCcCcccccCCcC
Q 038861 837 RNSNSSLQSLEIGTIEIEECNALESLPEAWMQDSSTSLESLNIDGCDSLTYIARIQLPPSLRRLIISDCYNLRTLTGDQG 916 (1165)
Q Consensus 837 ~~~~~~L~~l~l~~~~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~ 916 (1165)
...+++|++|++++|......+.+..+++|++|++++|.. ..+.
T Consensus 128 -------------------------------~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~---- 171 (347)
T 4fmz_A 128 -------------------------------LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV-KDVT---- 171 (347)
T ss_dssp -------------------------------GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCC-CCCG----
T ss_pred -------------------------------hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCc-CCch----
Confidence 1236677888888777777666677777777777777631 1110
Q ss_pred ccccCCCCccccccCCCCcccccccceeecccccccccccCCCCCCCccEEEEcCCCCchhhhhhcccCccceeeeeccc
Q 038861 917 ICSSRSGRTSLTSFSSENELPATLEQLEVRFCSNLAFLSRNGNLPQALKYLEVSYCSKLESLAERLDNTSLEVIAISYLE 996 (1165)
Q Consensus 917 ~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~ 996 (1165)
.+. ..++|+.|++++|...+ ++.....++|+.|++++|.
T Consensus 172 ----------------------~~~------------------~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~ 210 (347)
T 4fmz_A 172 ----------------------PIA------------------NLTDLYSLSLNYNQIED-ISPLASLTSLHYFTAYVNQ 210 (347)
T ss_dssp ----------------------GGG------------------GCTTCSEEECTTSCCCC-CGGGGGCTTCCEEECCSSC
T ss_pred ----------------------hhc------------------cCCCCCEEEccCCcccc-cccccCCCccceeecccCC
Confidence 000 01457777777775433 2323333667777777766
Q ss_pred ccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC
Q 038861 997 NLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED 1076 (1165)
Q Consensus 997 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~ 1076 (1165)
+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+... ..+..+++|+.|++++|++.+ ++..
T Consensus 211 l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~~~ 283 (347)
T 4fmz_A 211 ITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-ISVL 283 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CGGG
T ss_pred CCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-Chhh
Confidence 654433 5666777777777776555433 56666777777777765553 346667777777777776633 3433
Q ss_pred CCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCC
Q 038861 1077 GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGC 1116 (1165)
Q Consensus 1077 ~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 1116 (1165)
..+++|+.|++++|++.+..+ ..+.++++|++|++++|.
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 284 NNLSQLNSLFLNNNQLGNEDM-EVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp GGCTTCSEEECCSSCCCGGGH-HHHHTCTTCSEEECCSSS
T ss_pred cCCCCCCEEECcCCcCCCcCh-hHhhccccCCEEEccCCc
Confidence 556677777777776665433 235666666666666653
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=2.1e-24 Score=247.97 Aligned_cols=369 Identities=14% Similarity=0.061 Sum_probs=213.2
Q ss_pred cCCCCcCcceEEEEeeCCCCCCcCcCCCCCCceeEEeEcccCCCCCCCCCCCCCCCceeeecCCCCceEeCccccCCCCc
Q 038861 565 MLKPYQDVQELTITGYGGPKFPIWLGDSSFSKLVRLKFEHCGTSTSLPSVGQLPFLKELVISGMGRVKSVGSEFYGSSCS 644 (1165)
Q Consensus 565 ~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 644 (1165)
.+..+++|+.|+++++.+..+| .+. .+++|+.|++++|.+... | ++.+++|++|++++|...+ ++ +..
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~-~l~--~l~~L~~L~Ls~n~l~~~-~-~~~l~~L~~L~Ls~N~l~~-~~--~~~---- 104 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT-GIE--KLTGLTKLICTSNNITTL-D-LSQNTNLTYLACDSNKLTN-LD--VTP---- 104 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT-TGG--GCTTCSEEECCSSCCSCC-C-CTTCTTCSEEECCSSCCSC-CC--CTT----
T ss_pred ChhHcCCCCEEEccCCCcccCh-hhc--ccCCCCEEEccCCcCCeE-c-cccCCCCCEEECcCCCCce-ee--cCC----
Confidence 3445788999999999888887 343 488999999999988664 3 8889999999999986544 22 333
Q ss_pred cCCCCcceeeccccccccccccCCCCCcccCcCCccceeeecCCcccccCCCccccccceEEeecccccccccCCCCCce
Q 038861 645 VPFPSLETLYFANMQEWEEWIPFGSGQEVDEVFPKLRKLSLFSCSKLQGALPKRLLLLERLVIQSCKQLLVTIQCLPALS 724 (1165)
Q Consensus 645 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~~~~~~~~~~~~~l~~L~ 724 (1165)
+++|++|+++++. +... + ...+++|++|++++ +++++ ++ +..+++|+
T Consensus 105 --l~~L~~L~L~~N~-l~~l-~-------~~~l~~L~~L~l~~-N~l~~-l~--------------------l~~l~~L~ 151 (457)
T 3bz5_A 105 --LTKLTYLNCDTNK-LTKL-D-------VSQNPLLTYLNCAR-NTLTE-ID--------------------VSHNTQLT 151 (457)
T ss_dssp --CTTCCEEECCSSC-CSCC-C-------CTTCTTCCEEECTT-SCCSC-CC--------------------CTTCTTCC
T ss_pred --CCcCCEEECCCCc-CCee-c-------CCCCCcCCEEECCC-Cccce-ec--------------------cccCCcCC
Confidence 7888888888863 3332 1 23478888888888 45653 22 44567778
Q ss_pred EEEEecCCcccccCcccccccccccccccceeEeccCCCccccCCcCceEecCCCCccccchhhcCCCCcceEEEcCCCC
Q 038861 725 ELQIKGCKRVVLSSPMDLSSLKSVLLGEMANEVISGCPQLLSLVTEDDLELSNCKGLTKLPQALLTLSSLRELRISGCAS 804 (1165)
Q Consensus 725 ~L~l~~~~~l~~~~~~~~~~l~~l~~~~l~~~~i~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 804 (1165)
.|++++|..+... .+.. +++|++|++++|.+.+ +| +..+++|+.|++++|..
T Consensus 152 ~L~l~~n~~~~~~---~~~~----------------------l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l 203 (457)
T 3bz5_A 152 ELDCHLNKKITKL---DVTP----------------------QTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNI 203 (457)
T ss_dssp EEECTTCSCCCCC---CCTT----------------------CTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCC
T ss_pred EEECCCCCccccc---cccc----------------------CCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcC
Confidence 8888776433221 2333 3444445555544333 22 44455555555555533
Q ss_pred ccccCCCCCcccccEEEeccCCCCCCChHHHhhcCccccccccccceeecccccccCCchhhhcCCCCCcceEEEeCCCC
Q 038861 805 LVSFPQAALPSQLRTFKIEHCNALESLPEAWMRNSNSSLQSLEIGTIEIEECNALESLPEAWMQDSSTSLESLNIDGCDS 884 (1165)
Q Consensus 805 l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~ 884 (1165)
.. + ....+++|++|++++|.+.. +| + ...++|+.|++++|.+.+.+ ...+++|+.|+++++
T Consensus 204 ~~-~-~l~~l~~L~~L~Ls~N~l~~-ip--~--~~l~~L~~L~l~~N~l~~~~----------~~~l~~L~~L~l~~n-- 264 (457)
T 3bz5_A 204 TK-L-DLNQNIQLTFLDCSSNKLTE-ID--V--TPLTQLTYFDCSVNPLTELD----------VSTLSKLTTLHCIQT-- 264 (457)
T ss_dssp SC-C-CCTTCTTCSEEECCSSCCSC-CC--C--TTCTTCSEEECCSSCCSCCC----------CTTCTTCCEEECTTC--
T ss_pred Ce-e-ccccCCCCCEEECcCCcccc-cC--c--cccCCCCEEEeeCCcCCCcC----------HHHCCCCCEEeccCC--
Confidence 22 1 12334455555555554322 22 0 01112222222222211110 011344444544432
Q ss_pred CccccccCCccccceEeeccCcCcccccCCcCccccCCCCccccccCCCCcccccccceeecccccccccccCCCCCCCc
Q 038861 885 LTYIARIQLPPSLRRLIISDCYNLRTLTGDQGICSSRSGRTSLTSFSSENELPATLEQLEVRFCSNLAFLSRNGNLPQAL 964 (1165)
Q Consensus 885 l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~L 964 (1165)
+|+.+++++|.....+ | . ...++|
T Consensus 265 -----------~L~~L~l~~n~~~~~~-------------------------~-------~-------------~~l~~L 288 (457)
T 3bz5_A 265 -----------DLLEIDLTHNTQLIYF-------------------------Q-------A-------------EGCRKI 288 (457)
T ss_dssp -----------CCSCCCCTTCTTCCEE-------------------------E-------C-------------TTCTTC
T ss_pred -----------CCCEEECCCCccCCcc-------------------------c-------c-------------cccccC
Confidence 2344444444311111 1 0 011446
Q ss_pred cEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCC
Q 038861 965 KYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCE 1044 (1165)
Q Consensus 965 ~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 1044 (1165)
+.|++++|...+.+|. ..++|+.|++++| ++|++|++++|.+.+. .+..+++|+.|++++|.
T Consensus 289 ~~L~Ls~n~~l~~l~~--~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 289 KELDVTHNTQLYLLDC--QAAGITELDLSQN-------------PKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAH 350 (457)
T ss_dssp CCCCCTTCTTCCEEEC--TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSC
T ss_pred CEEECCCCcccceecc--CCCcceEechhhc-------------ccCCEEECCCCccccc---ccccCCcCcEEECCCCC
Confidence 7777777766655553 2245555554443 6788888888887773 27778888888888888
Q ss_pred CCCcCCcccCCCCCCceeeeccCCCCcccCCCCCCCCcceEEEecCCCCCcccccccccCCCCcEEE
Q 038861 1045 NLKALPNCMHNLTSLLHLEIGWCRSLVSFPEDGFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQ 1111 (1165)
Q Consensus 1045 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 1111 (1165)
+.+ ++.|..|++++|.+.+. ..+..|+.+++++|+++|.+|+..+....++....
T Consensus 351 l~~--------l~~L~~L~l~~n~l~g~----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~~ 405 (457)
T 3bz5_A 351 IQD--------FSSVGKIPALNNNFEAE----GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIE 405 (457)
T ss_dssp CCB--------CTTGGGSSGGGTSEEEE----EEEEECCCBCCBTTBEEEECCTTCBCTTSCCCEEE
T ss_pred CCC--------ccccccccccCCcEEec----ceeeecCccccccCcEEEEcChhHhcccCceeecc
Confidence 655 35666777777777554 24566777888888888888776555555555443
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=3.1e-23 Score=242.92 Aligned_cols=175 Identities=18% Similarity=0.205 Sum_probs=88.1
Q ss_pred CccEEEEcCCCCchhhhhhccc-CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEee
Q 038861 963 ALKYLEVSYCSKLESLAERLDN-TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIG 1041 (1165)
Q Consensus 963 ~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 1041 (1165)
+|+.|++++|.+....+..+.. ++|+.|++++|.+.+..+..+..+++|++|++++|+..+.+|.......+|+.|+++
T Consensus 153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 232 (477)
T 2id5_A 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT 232 (477)
T ss_dssp TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEE
T ss_pred CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECc
Confidence 3555555555443333332322 555555555555555545555555555555555555555555544444455555555
Q ss_pred cCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCCCCcc
Q 038861 1042 YCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCPVLL 1120 (1165)
Q Consensus 1042 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 1120 (1165)
+|.+....+..|.++++|+.|++++|++.+..+.. ..+++|+.|++++|++.+.. +..|.++++|+.|++++|.+..+
T Consensus 233 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~ 311 (477)
T 2id5_A 233 HCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE-PYAFRGLNYLRVLNVSGNQLTTL 311 (477)
T ss_dssp SSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEEC-TTTBTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceEC-HHHhcCcccCCEEECCCCcCcee
Confidence 55554433344555555555555555553333322 44555555555555555432 22355555555555555544443
Q ss_pred cCCCC--CCcccEEEecCCC
Q 038861 1121 SSPWF--PASLTVLHISYMP 1138 (1165)
Q Consensus 1121 ~~~~~--~~~L~~L~l~~~~ 1138 (1165)
....+ .++|+.|++++|+
T Consensus 312 ~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 312 EESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CGGGBSCGGGCCEEECCSSC
T ss_pred CHhHcCCCcccCEEEccCCC
Confidence 33221 2355555555554
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=1.4e-23 Score=234.83 Aligned_cols=264 Identities=19% Similarity=0.151 Sum_probs=161.2
Q ss_pred CCCccccCCcCceEecCCCCccccchhhcCCCCcceEEEcCCCCccccCCCCCcccccEEEeccCCCCCCChHHHhhcCc
Q 038861 761 CPQLLSLVTEDDLELSNCKGLTKLPQALLTLSSLRELRISGCASLVSFPQAALPSQLRTFKIEHCNALESLPEAWMRNSN 840 (1165)
Q Consensus 761 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 840 (1165)
++.+..+++|++|++++|.+.. ++ .+..+++|++|++++|... .++....+++|++|++++|.....++. +
T Consensus 81 ~~~~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~-~~~~~~~l~~L~~L~l~~n~~~~~~~~-~----- 151 (347)
T 4fmz_A 81 ISPLSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNIS-DISPLANLTKMYSLNLGANHNLSDLSP-L----- 151 (347)
T ss_dssp CGGGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCC-CCGGGTTCTTCCEEECTTCTTCCCCGG-G-----
T ss_pred chhhhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCccc-CchhhccCCceeEEECCCCCCcccccc-h-----
Confidence 3335555666666666665433 23 4666666666666666432 333344556666666666654443332 1
Q ss_pred cccccccccceeecccccccCCchhhhcCCCCCcceEEEeCCCCCccccccCCccccceEeeccCcCcccccCCcCcccc
Q 038861 841 SSLQSLEIGTIEIEECNALESLPEAWMQDSSTSLESLNIDGCDSLTYIARIQLPPSLRRLIISDCYNLRTLTGDQGICSS 920 (1165)
Q Consensus 841 ~~L~~l~l~~~~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 920 (1165)
..+++|++|++++|.... .+.+..+++|++|++++|. +..++
T Consensus 152 ----------------------------~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~-------- 193 (347)
T 4fmz_A 152 ----------------------------SNMTGLNYLTVTESKVKD-VTPIANLTDLYSLSLNYNQ-IEDIS-------- 193 (347)
T ss_dssp ----------------------------TTCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECTTSC-CCCCG--------
T ss_pred ----------------------------hhCCCCcEEEecCCCcCC-chhhccCCCCCEEEccCCc-ccccc--------
Confidence 124555555555554322 2224455556666665552 11110
Q ss_pred CCCCccccccCCCCcccccccceeecccccccccccCCCCCCCccEEEEcCCCCchhhhhhcccCccceeeeeccccccc
Q 038861 921 RSGRTSLTSFSSENELPATLEQLEVRFCSNLAFLSRNGNLPQALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKS 1000 (1165)
Q Consensus 921 ~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~ 1000 (1165)
. +. ..++|+.|++++|......+ ....++|++|++++|.+.+.
T Consensus 194 -----------------~-~~------------------~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~ 236 (347)
T 4fmz_A 194 -----------------P-LA------------------SLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDL 236 (347)
T ss_dssp -----------------G-GG------------------GCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC
T ss_pred -----------------c-cc------------------CCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCC
Confidence 0 00 01346667777665443333 33337777777877777554
Q ss_pred CCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCC
Q 038861 1001 LPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFP 1079 (1165)
Q Consensus 1001 ~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~ 1079 (1165)
.+ +..+++|++|++++|.+.+. +.+..+++|++|++++|.+... ..+..+++|+.|++++|++.+..+.. ..+
T Consensus 237 ~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 310 (347)
T 4fmz_A 237 SP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGL 310 (347)
T ss_dssp GG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTC
T ss_pred cc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhcc
Confidence 33 77888888888888876653 3567778888888888877664 34778888888888888886655554 667
Q ss_pred CCcceEEEecCCCCCcccccccccCCCCcEEEEecCCC
Q 038861 1080 TNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCP 1117 (1165)
Q Consensus 1080 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 1117 (1165)
++|+.|++++|++.+..+ +..+++|++|++++|.+
T Consensus 311 ~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 311 TNLTTLFLSQNHITDIRP---LASLSKMDSADFANQVI 345 (347)
T ss_dssp TTCSEEECCSSSCCCCGG---GGGCTTCSEESSSCC--
T ss_pred ccCCEEEccCCccccccC---hhhhhccceeehhhhcc
Confidence 888888888888876433 77788888888888754
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=6.5e-23 Score=240.20 Aligned_cols=298 Identities=18% Similarity=0.125 Sum_probs=215.2
Q ss_pred CCccceeeecCCcccccCCCccccccceEEeecccccccccCCCCCceEEEEecCCcccccCccccccccccccccccee
Q 038861 677 FPKLRKLSLFSCSKLQGALPKRLLLLERLVIQSCKQLLVTIQCLPALSELQIKGCKRVVLSSPMDLSSLKSVLLGEMANE 756 (1165)
Q Consensus 677 ~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~~~l~~~ 756 (1165)
.+.++.|++++ +++++..|. .+..+++|++|++++| .+....+..|..++.|+.+++++|
T Consensus 31 ~~~l~~L~L~~-n~l~~~~~~------------------~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 31 PTETRLLDLGK-NRIKTLNQD------------------EFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp CTTCSEEECCS-SCCCEECTT------------------TTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCCcEEECCC-CccceECHh------------------HccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCC
Confidence 34667777766 455533332 4667788888888874 566666777888888888888888
Q ss_pred EeccCC--CccccCCcCceEecCCCCccccchhhcCCCCcceEEEcCCCCccccC-CCCCcccccEEEeccCCCCCCChH
Q 038861 757 VISGCP--QLLSLVTEDDLELSNCKGLTKLPQALLTLSSLRELRISGCASLVSFP-QAALPSQLRTFKIEHCNALESLPE 833 (1165)
Q Consensus 757 ~i~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~ 833 (1165)
.+..++ .+..+++|++|++++|.+....|..|..+++|++|++++|......+ .+..+++|++|++++|.+....+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 887776 36788888999999988888888888889999999998886544333 334467888888888875443332
Q ss_pred HHhhcCccccccccccceeecccccccCCchhhhcCCCCCcceEEEeCCCCCcccc-ccCCccccceEeeccCcCccccc
Q 038861 834 AWMRNSNSSLQSLEIGTIEIEECNALESLPEAWMQDSSTSLESLNIDGCDSLTYIA-RIQLPPSLRRLIISDCYNLRTLT 912 (1165)
Q Consensus 834 ~~~~~~~~~L~~l~l~~~~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~l~ 912 (1165)
.+ ..+++|+.|++++|......+ .+..+++|++|++++|..+..++
T Consensus 171 ~l---------------------------------~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 217 (477)
T 2id5_A 171 AL---------------------------------SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217 (477)
T ss_dssp HH---------------------------------TTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC
T ss_pred Hh---------------------------------cccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccC
Confidence 22 236678888888876544332 45667778888887775443332
Q ss_pred CCcCccccCCCCccccccCCCCcccccccceeecccccccccccCCCCCCCccEEEEcCCCCchhhhhhccc-Cccceee
Q 038861 913 GDQGICSSRSGRTSLTSFSSENELPATLEQLEVRFCSNLAFLSRNGNLPQALKYLEVSYCSKLESLAERLDN-TSLEVIA 991 (1165)
Q Consensus 913 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~ 991 (1165)
... ....+|+.|++++|.+....+..+.. ++|+.|+
T Consensus 218 ~~~-------------------------------------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 254 (477)
T 2id5_A 218 PNC-------------------------------------------LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLN 254 (477)
T ss_dssp TTT-------------------------------------------TTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEE
T ss_pred ccc-------------------------------------------ccCccccEEECcCCcccccCHHHhcCccccCeeE
Confidence 111 00125888888888665433334443 8888888
Q ss_pred eecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCCC
Q 038861 992 ISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSL 1070 (1165)
Q Consensus 992 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 1070 (1165)
+++|.+.+..+..+.++++|++|+|++|.+.+..|..+..+++|+.|+|++|.+....+..|..+++|+.|++++|++.
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 255 LSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 8888888777778888888999999998888888888888888999999988888777777888888999999888874
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=4.2e-23 Score=234.55 Aligned_cols=306 Identities=16% Similarity=0.121 Sum_probs=173.5
Q ss_pred CCCceEEEEecCCcccccCcccccccccccccccceeEeccCC--CccccCCcCceEecCCCCccccchhhcCCCCcceE
Q 038861 720 LPALSELQIKGCKRVVLSSPMDLSSLKSVLLGEMANEVISGCP--QLLSLVTEDDLELSNCKGLTKLPQALLTLSSLREL 797 (1165)
Q Consensus 720 l~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~~~l~~~~i~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 797 (1165)
+++++.|++.++ .+....+..|..++.++.++++++.+..++ .+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 44 l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCC-chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 355666666653 344344444555566666666666665553 46667777777777777766666677777777777
Q ss_pred EEcCCCCccccCCC--CCcccccEEEeccCCCCCCChHHHhhcCccccccccccceeecccccccCCchhhhcCCCCCcc
Q 038861 798 RISGCASLVSFPQA--ALPSQLRTFKIEHCNALESLPEAWMRNSNSSLQSLEIGTIEIEECNALESLPEAWMQDSSTSLE 875 (1165)
Q Consensus 798 ~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~l~~l~~~~~~~~l~~L~ 875 (1165)
++++|... .++.. ..+++|++|++++|.+....+..+. ...+|+.|++++|.+.... ...+++|+
T Consensus 123 ~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~----------~~~l~~L~ 189 (390)
T 3o6n_A 123 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ--ATTSLQNLQLSSNRLTHVD----------LSLIPSLF 189 (390)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTS--SCTTCCEEECCSSCCSBCC----------GGGCTTCS
T ss_pred ECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhcc--CCCCCCEEECCCCcCCccc----------cccccccc
Confidence 77777543 44432 3467777777777775544443221 1234444454444443321 01245555
Q ss_pred eEEEeCCCCCccccccCCccccceEeeccCcCcccccCCcCccccCCCCccccccCCCCcccccccceeecccccccccc
Q 038861 876 SLNIDGCDSLTYIARIQLPPSLRRLIISDCYNLRTLTGDQGICSSRSGRTSLTSFSSENELPATLEQLEVRFCSNLAFLS 955 (1165)
Q Consensus 876 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~l~~~~ 955 (1165)
.|++++|... .+..+++|++|++++|. +..+
T Consensus 190 ~L~l~~n~l~----~~~~~~~L~~L~l~~n~-l~~~-------------------------------------------- 220 (390)
T 3o6n_A 190 HANVSYNLLS----TLAIPIAVEELDASHNS-INVV-------------------------------------------- 220 (390)
T ss_dssp EEECCSSCCS----EEECCSSCSEEECCSSC-CCEE--------------------------------------------
T ss_pred eeeccccccc----ccCCCCcceEEECCCCe-eeec--------------------------------------------
Confidence 5555554321 11233455555555542 1000
Q ss_pred cCCCCCCCccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCc
Q 038861 956 RNGNLPQALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKL 1035 (1165)
Q Consensus 956 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 1035 (1165)
....+++|+.|++++|.+.+ .+.....++|++|++++|.+.+..|..+..+++|++|++++|.+.+ +|..+..+++|
T Consensus 221 -~~~~~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L 297 (390)
T 3o6n_A 221 -RGPVNVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTL 297 (390)
T ss_dssp -ECCCCSSCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTC
T ss_pred -cccccccccEEECCCCCCcc-cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCC
Confidence 01122457777777765443 2333333667777777776666666666677777777777766443 34445566677
Q ss_pred CeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCCCCCCCcceEEEecCCCCC
Q 038861 1036 TKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPEDGFPTNLESLEVHDLKISK 1094 (1165)
Q Consensus 1036 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~ 1094 (1165)
++|++++|.+.. +|..+..+++|+.|++++|++.. ++ ...+++|+.|++++|++..
T Consensus 298 ~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~-~~-~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 298 KVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVT-LK-LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCC-CC-CCTTCCCSEEECCSSCEEH
T ss_pred CEEECCCCccee-cCccccccCcCCEEECCCCccce-eC-chhhccCCEEEcCCCCccc
Confidence 777777766543 45556666677777777776632 22 2456667777777776654
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=1.2e-22 Score=230.96 Aligned_cols=303 Identities=18% Similarity=0.084 Sum_probs=193.8
Q ss_pred cccccccccceeEeccCCC--ccccCCcCceEecCCCCccccchhhcCCCCcceEEEcCCCCccccCC-CCCcccccEEE
Q 038861 745 LKSVLLGEMANEVISGCPQ--LLSLVTEDDLELSNCKGLTKLPQALLTLSSLRELRISGCASLVSFPQ-AALPSQLRTFK 821 (1165)
Q Consensus 745 l~~l~~~~l~~~~i~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~ 821 (1165)
+..++.+++.++.+..++. +..+++|++|++++|.+....+..+..+++|++|++++|......+. ...+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 4456666677777776664 56677777777777776666566777777777777777754433332 23456777777
Q ss_pred eccCCCCCCChHHHhhcCccccccccccceeecccccccCCchhhhcCCCCCcceEEEeCCCCCcccc-ccCCccccceE
Q 038861 822 IEHCNALESLPEAWMRNSNSSLQSLEIGTIEIEECNALESLPEAWMQDSSTSLESLNIDGCDSLTYIA-RIQLPPSLRRL 900 (1165)
Q Consensus 822 l~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L 900 (1165)
+++|.+. .+|... +..+++|++|++++|......+ .+..+++|++|
T Consensus 124 L~~n~l~-~l~~~~--------------------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 170 (390)
T 3o6n_A 124 LERNDLS-SLPRGI--------------------------------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 170 (390)
T ss_dssp CCSSCCC-CCCTTT--------------------------------TTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEE
T ss_pred CCCCccC-cCCHHH--------------------------------hcCCCCCcEEECCCCccCccChhhccCCCCCCEE
Confidence 7777643 233211 1235677777777776544333 35666777777
Q ss_pred eeccCcCcccccCCcCccccCCCCccccccCCCCcccccccceeecccccccccccCCCCCCCccEEEEcCCCCchhhhh
Q 038861 901 IISDCYNLRTLTGDQGICSSRSGRTSLTSFSSENELPATLEQLEVRFCSNLAFLSRNGNLPQALKYLEVSYCSKLESLAE 980 (1165)
Q Consensus 901 ~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 980 (1165)
++++|. +..++ + ...++|+.|++++|.....
T Consensus 171 ~l~~n~-l~~~~---------------------------~------------------~~l~~L~~L~l~~n~l~~~--- 201 (390)
T 3o6n_A 171 QLSSNR-LTHVD---------------------------L------------------SLIPSLFHANVSYNLLSTL--- 201 (390)
T ss_dssp ECCSSC-CSBCC---------------------------G------------------GGCTTCSEEECCSSCCSEE---
T ss_pred ECCCCc-CCccc---------------------------c------------------ccccccceeeccccccccc---
Confidence 777763 11110 0 0013466677776643321
Q ss_pred hcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCc
Q 038861 981 RLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLL 1060 (1165)
Q Consensus 981 ~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 1060 (1165)
...++|+.|++++|.+... |. ..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..|..|.++++|+
T Consensus 202 -~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 275 (390)
T 3o6n_A 202 -AIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 275 (390)
T ss_dssp -ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred -CCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCC
Confidence 1125677777777776544 22 2246788888888876653 3566777888888888887777777788888888
Q ss_pred eeeeccCCCCcccCCC-CCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCCCCcccCCCCCCcccEEEecCCCC
Q 038861 1061 HLEIGWCRSLVSFPED-GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCPVLLSSPWFPASLTVLHISYMPN 1139 (1165)
Q Consensus 1061 ~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~ 1139 (1165)
.|++++|++.+ +|.. ..+++|+.|++++|++.+ +++ .+..+++|+.|++++|.+..+.. ...++|+.|++++|+.
T Consensus 276 ~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~~l~~L~~L~L~~N~i~~~~~-~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 276 RLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VER-NQPQFDRLENLYLDHNSIVTLKL-STHHTLKNLTLSHNDW 351 (390)
T ss_dssp EEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGG-GHHHHTTCSEEECCSSCCCCCCC-CTTCCCSEEECCSSCE
T ss_pred EEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCc-cccccCcCCEEECCCCccceeCc-hhhccCCEEEcCCCCc
Confidence 88888887744 4443 567888888888888764 333 36677888888888877666543 2345788888888764
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=3.8e-23 Score=248.16 Aligned_cols=317 Identities=15% Similarity=0.105 Sum_probs=211.1
Q ss_pred CCCceEEEEecCCcccccCcccccccccccccccceeEeccCC--CccccCCcCceEecCCCCccccchhhcCCCCcceE
Q 038861 720 LPALSELQIKGCKRVVLSSPMDLSSLKSVLLGEMANEVISGCP--QLLSLVTEDDLELSNCKGLTKLPQALLTLSSLREL 797 (1165)
Q Consensus 720 l~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~~~l~~~~i~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 797 (1165)
+.+++.+++.+ +.+....+..|..++.|..+++++|.+..++ .+..+++|++|++++|.+.+..|..|.++++|++|
T Consensus 50 l~~l~~l~l~~-~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKN-STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESS-CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeC-CCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 34556666655 3344444444556666666666666666553 56677777777777777776666677777788888
Q ss_pred EEcCCCCccccCCC--CCcccccEEEeccCCCCCCChHHHhhcCccccccccccceeecccccccCCchhhhcCCCCCcc
Q 038861 798 RISGCASLVSFPQA--ALPSQLRTFKIEHCNALESLPEAWMRNSNSSLQSLEIGTIEIEECNALESLPEAWMQDSSTSLE 875 (1165)
Q Consensus 798 ~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~l~~l~~~~~~~~l~~L~ 875 (1165)
++++|... .++.. ..+++|++|++++|.+....|..+. ...+|+.|++++|.+.... . ..+++|+
T Consensus 129 ~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~------~----~~l~~L~ 195 (597)
T 3oja_B 129 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ--ATTSLQNLQLSSNRLTHVD------L----SLIPSLF 195 (597)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT--TCTTCCEEECTTSCCSBCC------G----GGCTTCS
T ss_pred EeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhh--cCCcCcEEECcCCCCCCcC------h----hhhhhhh
Confidence 88777544 34432 3467777888877776555554332 2245666666665554431 1 2256777
Q ss_pred eEEEeCCCCCccccccCCccccceEeeccCcCcccccCCcCccccCCCCccccccCCCCcccccccceeecccccccccc
Q 038861 876 SLNIDGCDSLTYIARIQLPPSLRRLIISDCYNLRTLTGDQGICSSRSGRTSLTSFSSENELPATLEQLEVRFCSNLAFLS 955 (1165)
Q Consensus 876 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~l~~~~ 955 (1165)
.|++++|... .+..+++|+.|++++|. +..+
T Consensus 196 ~L~l~~n~l~----~l~~~~~L~~L~ls~n~-l~~~-------------------------------------------- 226 (597)
T 3oja_B 196 HANVSYNLLS----TLAIPIAVEELDASHNS-INVV-------------------------------------------- 226 (597)
T ss_dssp EEECCSSCCS----EEECCTTCSEEECCSSC-CCEE--------------------------------------------
T ss_pred hhhcccCccc----cccCCchhheeeccCCc-cccc--------------------------------------------
Confidence 7777776432 22345567777776663 1111
Q ss_pred cCCCCCCCccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCc
Q 038861 956 RNGNLPQALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKL 1035 (1165)
Q Consensus 956 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 1035 (1165)
....+++|+.|++++|.+.+ .+.....++|+.|++++|.+.+..|..+.++++|++|+|++|.+.+ +|..+..+++|
T Consensus 227 -~~~~~~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L 303 (597)
T 3oja_B 227 -RGPVNVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTL 303 (597)
T ss_dssp -ECSCCSCCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTC
T ss_pred -ccccCCCCCEEECCCCCCCC-ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCC
Confidence 11233568899999987654 3444444899999999999988888889999999999999998665 56667778899
Q ss_pred CeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCCCCCCCcceEEEecCCCCCcccccccccCC
Q 038861 1036 TKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPEDGFPTNLESLEVHDLKISKPLFEWGLNKFS 1105 (1165)
Q Consensus 1036 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~ 1105 (1165)
+.|+|++|.+. .+|..+..+++|+.|++++|++.+. + ...+++|+.|++++|++.+......+..+.
T Consensus 304 ~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~ 370 (597)
T 3oja_B 304 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCNSLRALFRNVA 370 (597)
T ss_dssp CEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEEHHHHHHHTTTCC
T ss_pred cEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C-hhhcCCCCEEEeeCCCCCChhHHHHHHHHh
Confidence 99999999876 4677788889999999999988543 3 356788999999999887544333344333
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=2.8e-22 Score=240.64 Aligned_cols=303 Identities=17% Similarity=0.080 Sum_probs=167.7
Q ss_pred cccccccccceeEeccCCC--ccccCCcCceEecCCCCccccchhhcCCCCcceEEEcCCCCccccCC-CCCcccccEEE
Q 038861 745 LKSVLLGEMANEVISGCPQ--LLSLVTEDDLELSNCKGLTKLPQALLTLSSLRELRISGCASLVSFPQ-AALPSQLRTFK 821 (1165)
Q Consensus 745 l~~l~~~~l~~~~i~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~ 821 (1165)
+..+..+++.++.+..+|. +..+++|++|++++|.+.+..|..|..+++|++|++++|......+. +..+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 3455666677777777764 56677888888888877766666777888888888888765443332 24467788888
Q ss_pred eccCCCCCCChHHHhhcCccccccccccceeecccccccCCchhhhcCCCCCcceEEEeCCCCCcccc-ccCCccccceE
Q 038861 822 IEHCNALESLPEAWMRNSNSSLQSLEIGTIEIEECNALESLPEAWMQDSSTSLESLNIDGCDSLTYIA-RIQLPPSLRRL 900 (1165)
Q Consensus 822 l~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L 900 (1165)
+++|.+.. +|..+ +..+++|++|++++|......+ .+..+++|++|
T Consensus 130 L~~n~l~~-l~~~~--------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 176 (597)
T 3oja_B 130 LERNDLSS-LPRGI--------------------------------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176 (597)
T ss_dssp CCSSCCCC-CCTTT--------------------------------TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred eeCCCCCC-CCHHH--------------------------------hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEE
Confidence 88776443 33211 1235667777777665544333 35566677777
Q ss_pred eeccCcCcccccCCcCccccCCCCccccccCCCCcccccccceeecccccccccccCCCCCCCccEEEEcCCCCchhhhh
Q 038861 901 IISDCYNLRTLTGDQGICSSRSGRTSLTSFSSENELPATLEQLEVRFCSNLAFLSRNGNLPQALKYLEVSYCSKLESLAE 980 (1165)
Q Consensus 901 ~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 980 (1165)
++++|. +..++ + ...++|+.|++++|...+.
T Consensus 177 ~L~~N~-l~~~~--------------------------------~-------------~~l~~L~~L~l~~n~l~~l--- 207 (597)
T 3oja_B 177 QLSSNR-LTHVD--------------------------------L-------------SLIPSLFHANVSYNLLSTL--- 207 (597)
T ss_dssp ECTTSC-CSBCC--------------------------------G-------------GGCTTCSEEECCSSCCSEE---
T ss_pred ECcCCC-CCCcC--------------------------------h-------------hhhhhhhhhhcccCccccc---
Confidence 776663 11110 0 0012355555555533210
Q ss_pred hcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCc
Q 038861 981 RLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLL 1060 (1165)
Q Consensus 981 ~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 1060 (1165)
...++|+.|++++|.+....+. + .++|+.|+|++|.+.+ +..+..+++|+.|+|++|.+.+..|..|.++++|+
T Consensus 208 -~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 281 (597)
T 3oja_B 208 -AIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 281 (597)
T ss_dssp -ECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred -cCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCC
Confidence 1114555555555555332211 1 2456666666665544 23455556666666666666555555566666666
Q ss_pred eeeeccCCCCcccCCC-CCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCCCCcccCCCCCCcccEEEecCCCC
Q 038861 1061 HLEIGWCRSLVSFPED-GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCPVLLSSPWFPASLTVLHISYMPN 1139 (1165)
Q Consensus 1061 ~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~ 1139 (1165)
.|++++|.+.+ +|.. ..+++|+.|++++|++.+ ++.. +..+++|+.|++++|.+..+... ..++|+.|++++|+.
T Consensus 282 ~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~-~~~l~~L~~L~L~~N~l~~~~~~-~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 282 RLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERN-QPQFDRLENLYLDHNSIVTLKLS-THHTLKNLTLSHNDW 357 (597)
T ss_dssp EEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGG-HHHHTTCSEEECCSSCCCCCCCC-TTCCCSEEECCSSCE
T ss_pred EEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc-cCcc-cccCCCCCEEECCCCCCCCcChh-hcCCCCEEEeeCCCC
Confidence 66666665533 3333 445666666666666553 2222 45566666666666555444322 234566666666553
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=9.7e-22 Score=217.63 Aligned_cols=196 Identities=13% Similarity=0.075 Sum_probs=137.2
Q ss_pred CCccEEEEcCCCCchhhhhhccc-Cccceeeeeccccc--ccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeE
Q 038861 962 QALKYLEVSYCSKLESLAERLDN-TSLEVIAISYLENL--KSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKL 1038 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~n~~~--~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 1038 (1165)
++|++|++++|.+....+..+.. ++|+.|++++|.+. +..|..+..+ +|++|++++|.+.+ +|..+. ++|++|
T Consensus 123 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L 198 (332)
T 2ft3_A 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNEL 198 (332)
T ss_dssp TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCC
T ss_pred ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEE
Confidence 45777777777655444443443 77888888887774 3556667777 88888888887555 444443 578888
Q ss_pred EeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCCC
Q 038861 1039 TIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCP 1117 (1165)
Q Consensus 1039 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 1117 (1165)
++++|.+.+..+..|.++++|+.|++++|++.+..+.. ..+++|+.|++++|++.. ++.. +..+++|+.|++++|.+
T Consensus 199 ~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~~-l~~l~~L~~L~l~~N~l 276 (332)
T 2ft3_A 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAG-LPDLKLLQVVYLHTNNI 276 (332)
T ss_dssp BCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB-CCTT-GGGCTTCCEEECCSSCC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee-cChh-hhcCccCCEEECCCCCC
Confidence 88888887777777888888888888888875544433 667888888888888873 4443 77888888888888877
Q ss_pred CcccCCCC--------CCcccEEEecCCCCc--ccHHHhhhcCCccceEeecCCCC
Q 038861 1118 VLLSSPWF--------PASLTVLHISYMPNL--ESLSLIVENLTSLEILILCKCPK 1163 (1165)
Q Consensus 1118 ~~~~~~~~--------~~~L~~L~l~~~~~l--~~l~~~~~~l~~L~~L~l~~c~~ 1163 (1165)
..+....+ .++|+.|++++|+.. ...+..+..+++|+.+++++|.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~~ 332 (332)
T 2ft3_A 277 TKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYKK 332 (332)
T ss_dssp CBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC-----
T ss_pred CccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccccC
Confidence 66554432 356889999998864 34566688999999999999864
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=7.1e-21 Score=210.60 Aligned_cols=196 Identities=13% Similarity=0.100 Sum_probs=151.5
Q ss_pred CCccEEEEcCCCCchhhhhhccc-Cccceeeeecccccc--cCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeE
Q 038861 962 QALKYLEVSYCSKLESLAERLDN-TSLEVIAISYLENLK--SLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKL 1038 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~n~~~~--~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 1038 (1165)
++|+.|++++|.+.+..+..+.. ++|++|++++|.+.. ..+..+.++++|++|++++|.+.. +|..+. ++|++|
T Consensus 121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L 197 (330)
T 1xku_A 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTEL 197 (330)
T ss_dssp TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEE
T ss_pred ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEE
Confidence 45888888888766655555544 889999999888853 667788889999999999998654 454443 789999
Q ss_pred EeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCCC
Q 038861 1039 TIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCP 1117 (1165)
Q Consensus 1039 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 1117 (1165)
++++|.+.+..|..|.++++|+.|++++|.+.+..+.. ..+++|+.|++++|++.. ++. .+..+++|++|++++|.+
T Consensus 198 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~-~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPG-GLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCT-TTTTCSSCCEEECCSSCC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc-CCh-hhccCCCcCEEECCCCcC
Confidence 99999988887888999999999999999986655544 678899999999999874 444 488899999999999888
Q ss_pred CcccCCCC--------CCcccEEEecCCCCcc--cHHHhhhcCCccceEeecCCC
Q 038861 1118 VLLSSPWF--------PASLTVLHISYMPNLE--SLSLIVENLTSLEILILCKCP 1162 (1165)
Q Consensus 1118 ~~~~~~~~--------~~~L~~L~l~~~~~l~--~l~~~~~~l~~L~~L~l~~c~ 1162 (1165)
..+....+ .++++.|++++||... ..|..+..+++|+.+++++|.
T Consensus 276 ~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 276 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 77665543 3578999999988532 335668889999999999873
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=4.2e-21 Score=212.42 Aligned_cols=150 Identities=11% Similarity=0.034 Sum_probs=107.9
Q ss_pred CccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeec
Q 038861 963 ALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGY 1042 (1165)
Q Consensus 963 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 1042 (1165)
+|+.|++++|.+.. +|.... ++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 172 ~L~~L~l~~n~l~~-l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 249 (330)
T 1xku_A 172 KLSYIRIADTNITT-IPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249 (330)
T ss_dssp TCCEEECCSSCCCS-CCSSCC-TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS
T ss_pred CcCEEECCCCcccc-CCcccc-ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCC
Confidence 35555555554322 222222 6677777777777777778888899999999999988877777888888999999999
Q ss_pred CCCCCcCCcccCCCCCCceeeeccCCCCcccCCC-------CCCCCcceEEEecCCCCC-cccccccccCCCCcEEEEec
Q 038861 1043 CENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-------GFPTNLESLEVHDLKISK-PLFEWGLNKFSSLRELQITG 1114 (1165)
Q Consensus 1043 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-------~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~ 1114 (1165)
|.+. .+|..+..+++|++|++++|++.+..+.. ....+|+.|++++|++.. .+.+..|..+.+++.+++++
T Consensus 250 N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 250 NKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp SCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC--
T ss_pred CcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecc
Confidence 8876 56777888999999999999884432222 124788899999998863 34455688888999999887
Q ss_pred C
Q 038861 1115 G 1115 (1165)
Q Consensus 1115 n 1115 (1165)
|
T Consensus 329 N 329 (330)
T 1xku_A 329 Y 329 (330)
T ss_dssp -
T ss_pred c
Confidence 6
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=2.3e-22 Score=219.67 Aligned_cols=247 Identities=16% Similarity=0.156 Sum_probs=154.5
Q ss_pred CcCceEecCCCCcc--ccchhhcCCCCcceEEEcC-CCCccccCC-CCCcccccEEEeccCCCCCCChHHHhhcCccccc
Q 038861 769 TEDDLELSNCKGLT--KLPQALLTLSSLRELRISG-CASLVSFPQ-AALPSQLRTFKIEHCNALESLPEAWMRNSNSSLQ 844 (1165)
Q Consensus 769 ~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 844 (1165)
.++.|++++|.+.+ .+|..+.++++|++|++++ |.....+|. ...+++|++|++++|.+...+|..+.
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-------- 122 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS-------- 122 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG--------
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh--------
Confidence 45667777777766 6777777777777777774 544434442 33456677777777765544544321
Q ss_pred cccccceeecccccccCCchhhhcCCCCCcceEEEeCCCCCcccc-ccCCccccceEeeccCcCcccccCCcCccccCCC
Q 038861 845 SLEIGTIEIEECNALESLPEAWMQDSSTSLESLNIDGCDSLTYIA-RIQLPPSLRRLIISDCYNLRTLTGDQGICSSRSG 923 (1165)
Q Consensus 845 ~l~l~~~~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 923 (1165)
.+++|++|++++|......+ .+..+++|++|++++|..-..
T Consensus 123 -------------------------~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~------------- 164 (313)
T 1ogq_A 123 -------------------------QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA------------- 164 (313)
T ss_dssp -------------------------GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEE-------------
T ss_pred -------------------------CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCc-------------
Confidence 14556666666654332222 334455555555555531101
Q ss_pred CccccccCCCCcccccccceeecccccccccccCCCCCCCccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCc
Q 038861 924 RTSLTSFSSENELPATLEQLEVRFCSNLAFLSRNGNLPQALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPA 1003 (1165)
Q Consensus 924 ~~~l~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~ 1003 (1165)
+|..+. ..+++|+.|++++|.+.+.+|..+....|++|++++|.+.+..|.
T Consensus 165 ------------~p~~l~-----------------~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~ 215 (313)
T 1ogq_A 165 ------------IPDSYG-----------------SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASV 215 (313)
T ss_dssp ------------CCGGGG-----------------CCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGG
T ss_pred ------------CCHHHh-----------------hhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCH
Confidence 111111 112356777777776665666655554477777777777777777
Q ss_pred ccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCCCCCCCcc
Q 038861 1004 GLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPEDGFPTNLE 1083 (1165)
Q Consensus 1004 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~ 1083 (1165)
.+..+++|++|++++|.+.+.+|. +..+++|++|++++|.+.+.+|..|..+++|+.|++++|++.+.+|....+++|+
T Consensus 216 ~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~ 294 (313)
T 1ogq_A 216 LFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFD 294 (313)
T ss_dssp GCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSC
T ss_pred HHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccC
Confidence 777777777777777776655554 5666777777777777776777777777777777777777776777666677777
Q ss_pred eEEEecCC
Q 038861 1084 SLEVHDLK 1091 (1165)
Q Consensus 1084 ~L~l~~n~ 1091 (1165)
.|++++|+
T Consensus 295 ~l~l~~N~ 302 (313)
T 1ogq_A 295 VSAYANNK 302 (313)
T ss_dssp GGGTCSSS
T ss_pred hHHhcCCC
Confidence 77777776
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=2.4e-22 Score=219.49 Aligned_cols=227 Identities=15% Similarity=0.098 Sum_probs=156.3
Q ss_pred CCCcceEEEeC-CCCCcccc-ccCCccccceEeeccCcCcccccCCcCccccCCCCccccccCCCCcccccccceeeccc
Q 038861 871 STSLESLNIDG-CDSLTYIA-RIQLPPSLRRLIISDCYNLRTLTGDQGICSSRSGRTSLTSFSSENELPATLEQLEVRFC 948 (1165)
Q Consensus 871 l~~L~~L~l~~-~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~ 948 (1165)
+++|++|++++ |.....++ .+..+++|++|++++|... +.+|..+..+
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-------------------------~~~p~~~~~l----- 124 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS-------------------------GAIPDFLSQI----- 124 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE-------------------------EECCGGGGGC-----
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeC-------------------------CcCCHHHhCC-----
Confidence 56777777774 44333333 4566677777777776311 1112222222
Q ss_pred ccccccccCCCCCCCccEEEEcCCCCchhhhhhccc-CccceeeeecccccccCCcccCCCC-CCCEEEEeCCCCCcccc
Q 038861 949 SNLAFLSRNGNLPQALKYLEVSYCSKLESLAERLDN-TSLEVIAISYLENLKSLPAGLHNLH-HLQELKVYGCPNLESFP 1026 (1165)
Q Consensus 949 ~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~n~~~~~~p~~~~~l~-~L~~L~L~~n~~~~~~~ 1026 (1165)
++|++|++++|.+.+.+|..+.. ++|++|++++|.+.+.+|..+..++ +|++|++++|.+.+.+|
T Consensus 125 -------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~ 191 (313)
T 1ogq_A 125 -------------KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191 (313)
T ss_dssp -------------TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC
T ss_pred -------------CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCC
Confidence 45788888888776666665554 8888888888888777888888877 88888888888777777
Q ss_pred CCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCCCCCCCcceEEEecCCCCCcccccccccCCC
Q 038861 1027 EGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPEDGFPTNLESLEVHDLKISKPLFEWGLNKFSS 1106 (1165)
Q Consensus 1027 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~ 1106 (1165)
..+..++ |+.|++++|.+.+..|..|..+++|+.|++++|.+.+.+|....+++|++|++++|++.+.++.. +..+++
T Consensus 192 ~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~ 269 (313)
T 1ogq_A 192 PTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG-LTQLKF 269 (313)
T ss_dssp GGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGG-GGGCTT
T ss_pred hHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChH-HhcCcC
Confidence 7777776 88888888888777777888888888888888888666666667788888888888887665544 778888
Q ss_pred CcEEEEecCCCC-cccCCCCCCcccEEEecCCCCccc
Q 038861 1107 LRELQITGGCPV-LLSSPWFPASLTVLHISYMPNLES 1142 (1165)
Q Consensus 1107 L~~L~l~~n~~~-~~~~~~~~~~L~~L~l~~~~~l~~ 1142 (1165)
|++|++++|... .++...-.++|+.|++++|+.+..
T Consensus 270 L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 270 LHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred CCEEECcCCcccccCCCCccccccChHHhcCCCCccC
Confidence 888888876543 222222234566666666665443
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=8e-21 Score=210.27 Aligned_cols=149 Identities=11% Similarity=-0.017 Sum_probs=110.9
Q ss_pred ccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecC
Q 038861 964 LKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYC 1043 (1165)
Q Consensus 964 L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 1043 (1165)
|+.|++++|.+.+ +|.... ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 174 L~~L~l~~n~l~~-l~~~~~-~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 251 (332)
T 2ft3_A 174 LNYLRISEAKLTG-IPKDLP-ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251 (332)
T ss_dssp CSCCBCCSSBCSS-CCSSSC-SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred cCEEECcCCCCCc-cCcccc-CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC
Confidence 5556666664332 333222 67888888888887777788889999999999999988877777888899999999999
Q ss_pred CCCCcCCcccCCCCCCceeeeccCCCCcccCCC-C------CCCCcceEEEecCCCCC-cccccccccCCCCcEEEEecC
Q 038861 1044 ENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-G------FPTNLESLEVHDLKISK-PLFEWGLNKFSSLRELQITGG 1115 (1165)
Q Consensus 1044 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~------~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n 1115 (1165)
.+. .+|..+..+++|+.|++++|++.+..+.. . ...+|+.|++++|++.. .+.+..|..+++|+.+++++|
T Consensus 252 ~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 252 KLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred cCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 876 57777889999999999999885433322 1 14678999999998862 344556888999999999876
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=1.9e-20 Score=205.44 Aligned_cols=215 Identities=21% Similarity=0.328 Sum_probs=160.2
Q ss_pred eeeccCccccccccccccCcccccccccCCCCccccCcccccCCCccEEeccCcchhccccccccCCCCcceeeccCCCC
Q 038861 391 VFSLWGYCNIFNLPNEIGNLRHLRFLNLSGTNIQILPESINSLYNLHTILLEDCRRLKKLCNDMGNLTKLHHLRNSNVHS 470 (1165)
Q Consensus 391 ~l~l~~~~~l~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~~~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~ 470 (1165)
.|++.++ .+..+|..+.++++|++|+|++|.+..+|..++++++|++|++++|... .+|..++++++|++|++++|..
T Consensus 85 ~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~ 162 (328)
T 4fcg_A 85 ALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPE 162 (328)
T ss_dssp EEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETT
T ss_pred EEEccCC-CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCC
Confidence 5778887 7888999898999999999999999999999999999999999987655 7888899999999999999887
Q ss_pred CCCCCCCcccccccceeceEEeccccCCCccccCCccccccceeeccccCCCchhhhhHhhcCCCcCccceEeeeccccc
Q 038861 471 LGEMPKGFGKLTCLLTLGRFVVGKVSGSGLRELKSLTHLQETLRISKLENVKDVCDACEAQLNNKVNLKALLLEWSIWHV 550 (1165)
Q Consensus 471 ~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 550 (1165)
.+.+|..++...
T Consensus 163 ~~~~p~~~~~~~-------------------------------------------------------------------- 174 (328)
T 4fcg_A 163 LTELPEPLASTD-------------------------------------------------------------------- 174 (328)
T ss_dssp CCCCCSCSEEEC--------------------------------------------------------------------
T ss_pred ccccChhHhhcc--------------------------------------------------------------------
Confidence 888887654311
Q ss_pred cCccchhhHHhhhccCCCCcCcceEEEEeeCCCCCCcCcCCCCCCceeEEeEcccCCCCCCCCCCCCCCCceeeecCCCC
Q 038861 551 RNLDQCEFETRVLSMLKPYQDVQELTITGYGGPKFPIWLGDSSFSKLVRLKFEHCGTSTSLPSVGQLPFLKELVISGMGR 630 (1165)
Q Consensus 551 ~~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~ 630 (1165)
....+..+++|+.|++++|.+..+|.++.. +++|+.|++++|.+....+.++.+++|++|++++|..
T Consensus 175 -----------~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~--l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~ 241 (328)
T 4fcg_A 175 -----------ASGEHQGLVNLQSLRLEWTGIRSLPASIAN--LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTA 241 (328)
T ss_dssp ------------CCCEEESTTCCEEEEEEECCCCCCGGGGG--CTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTT
T ss_pred -----------chhhhccCCCCCEEECcCCCcCcchHhhcC--CCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcc
Confidence 011233456777777888777777777653 7778888888887775544677778888888888777
Q ss_pred ceEeCccccCCCCccCCCCcceeeccccccccccccCCCCCcccCcCCccceeeecCCcccccCCCccccc
Q 038861 631 VKSVGSEFYGSSCSVPFPSLETLYFANMQEWEEWIPFGSGQEVDEVFPKLRKLSLFSCSKLQGALPKRLLL 701 (1165)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~ 701 (1165)
.+.++..+.+ +++|+.|++++|.....+ +.. ...+++|++|++++|+.+ +.+|..+.+
T Consensus 242 ~~~~p~~~~~------l~~L~~L~L~~n~~~~~~-p~~-----~~~l~~L~~L~L~~n~~~-~~iP~~l~~ 299 (328)
T 4fcg_A 242 LRNYPPIFGG------RAPLKRLILKDCSNLLTL-PLD-----IHRLTQLEKLDLRGCVNL-SRLPSLIAQ 299 (328)
T ss_dssp CCBCCCCTTC------CCCCCEEECTTCTTCCBC-CTT-----GGGCTTCCEEECTTCTTC-CCCCGGGGG
T ss_pred hhhhHHHhcC------CCCCCEEECCCCCchhhc-chh-----hhcCCCCCEEeCCCCCch-hhccHHHhh
Confidence 7777766655 778888888776543332 221 234788999999986554 477764433
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=5.5e-20 Score=201.85 Aligned_cols=130 Identities=22% Similarity=0.288 Sum_probs=100.9
Q ss_pred CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeee
Q 038861 985 TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEI 1064 (1165)
Q Consensus 985 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 1064 (1165)
++|++|++++|.+. .+|..+.++++|++|++++|.+.+ +|..+..+++|++|++++|.+.+.+|..|.++++|+.|++
T Consensus 183 ~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 260 (328)
T 4fcg_A 183 VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260 (328)
T ss_dssp TTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred CCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence 56667777777665 667778888888888888888664 4556777888888888888888888888888888888888
Q ss_pred ccCCCCcccCCC-CCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCCC
Q 038861 1065 GWCRSLVSFPED-GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCP 1117 (1165)
Q Consensus 1065 ~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 1117 (1165)
++|++.+.+|.. ..+++|+.|++++|++.+.+|.. +.++++|+.+++..+..
T Consensus 261 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~-l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL-IAQLPANCIILVPPHLQ 313 (328)
T ss_dssp TTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG-GGGSCTTCEEECCGGGS
T ss_pred CCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH-HhhccCceEEeCCHHHH
Confidence 888887887766 77788888888888888777655 88888888888876543
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=5.8e-19 Score=190.61 Aligned_cols=204 Identities=17% Similarity=0.073 Sum_probs=169.1
Q ss_pred CCCCCCccEEEEcCCCCchhhhhhccc-CccceeeeecccccccCCcccCCCCCCCEEEEeCCC-CCccccCCCCCCCCc
Q 038861 958 GNLPQALKYLEVSYCSKLESLAERLDN-TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCP-NLESFPEGGLPSTKL 1035 (1165)
Q Consensus 958 ~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L 1035 (1165)
..+|++++.|++++|.+.+..+..+.. ++|++|++++|.+.+..|..+.++++|++|++++|. +....|..+..+++|
T Consensus 28 ~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L 107 (285)
T 1ozn_A 28 VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL 107 (285)
T ss_dssp TTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred cCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCC
Confidence 456788999999999877665555555 899999999999988888899999999999999998 555667889999999
Q ss_pred CeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceEEEecCCCCCcccccccccCCCCcEEEEec
Q 038861 1036 TKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITG 1114 (1165)
Q Consensus 1036 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 1114 (1165)
++|++++|.+.+..|..|.++++|++|++++|++.+..+.. ..+++|+.|++++|++.+ +++..|.++++|+.|++++
T Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc-cCHHHhcCccccCEEECCC
Confidence 99999999998888888999999999999999996544443 678999999999999875 4444588999999999999
Q ss_pred CCCCcccCCCC--CCcccEEEecCCCCcccHHHhhhcCCccceEeecCCC
Q 038861 1115 GCPVLLSSPWF--PASLTVLHISYMPNLESLSLIVENLTSLEILILCKCP 1162 (1165)
Q Consensus 1115 n~~~~~~~~~~--~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 1162 (1165)
|.+..+....+ .++|+.|++++|..-...+..+..+++|+.|++++|+
T Consensus 187 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred CcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 87776644433 4689999999975444444568899999999999986
No 54
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.81 E-value=1.2e-21 Score=229.00 Aligned_cols=201 Identities=22% Similarity=0.058 Sum_probs=126.8
Q ss_pred CCccEEEEcCCCCchhhhhhcc------cCccceeeeeccccccc----CCcccCCCCCCCEEEEeCCCCCccc-----c
Q 038861 962 QALKYLEVSYCSKLESLAERLD------NTSLEVIAISYLENLKS----LPAGLHNLHHLQELKVYGCPNLESF-----P 1026 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~~~~~~~------~~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~L~L~~n~~~~~~-----~ 1026 (1165)
++|++|++++|.+....+..+. .++|++|++++|.+... ++..+..+++|++|++++|.+.... +
T Consensus 170 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 249 (461)
T 1z7x_W 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCP 249 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHH
Confidence 4577888888765443332221 25788888888877653 4566667778888888888754421 2
Q ss_pred CCCCCCCCcCeEEeecCCCCCc----CCcccCCCCCCceeeeccCCCCcccC----CC--CCCCCcceEEEecCCCCCcc
Q 038861 1027 EGGLPSTKLTKLTIGYCENLKA----LPNCMHNLTSLLHLEIGWCRSLVSFP----ED--GFPTNLESLEVHDLKISKPL 1096 (1165)
Q Consensus 1027 ~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~p----~~--~~~~~L~~L~l~~n~~~~~~ 1096 (1165)
..+..+++|++|++++|.+... ++..+..+++|++|++++|.+....+ .. ...++|+.|++++|++.+..
T Consensus 250 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 329 (461)
T 1z7x_W 250 GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC 329 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHH
Confidence 2233467788888888876553 45566667888888888887632211 11 23357888888888876531
Q ss_pred ---cccccccCCCCcEEEEecCCCCcccCCC-------CCCcccEEEecCCCCcc----cHHHhhhcCCccceEeecCCC
Q 038861 1097 ---FEWGLNKFSSLRELQITGGCPVLLSSPW-------FPASLTVLHISYMPNLE----SLSLIVENLTSLEILILCKCP 1162 (1165)
Q Consensus 1097 ---~~~~~~~l~~L~~L~l~~n~~~~~~~~~-------~~~~L~~L~l~~~~~l~----~l~~~~~~l~~L~~L~l~~c~ 1162 (1165)
.+..+..+++|++|++++|.+....... ..++|++|++++|..-. .++..+..+++|++|++++|+
T Consensus 330 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 330 CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred HHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 1223566778888888877554322111 13478888888764332 567677778888888888774
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=3.3e-18 Score=201.83 Aligned_cols=265 Identities=25% Similarity=0.206 Sum_probs=167.3
Q ss_pred CcCceEecCCCCccccchhhcCCCCcceEEEcCCCCccccCCCCCcccccEEEeccCCCCCCChHHHhhcCccccccccc
Q 038861 769 TEDDLELSNCKGLTKLPQALLTLSSLRELRISGCASLVSFPQAALPSQLRTFKIEHCNALESLPEAWMRNSNSSLQSLEI 848 (1165)
Q Consensus 769 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~l 848 (1165)
+++.|++++|.+. .+|..+. ++|+.|++++|.. ..+|. .+++|++|++++|.+. .+|.
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l-~~lp~--~l~~L~~L~Ls~N~l~-~lp~--------------- 98 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNL-TSLPA--LPPELRTLEVSGNQLT-SLPV--------------- 98 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCC-SCCCC--CCTTCCEEEECSCCCS-CCCC---------------
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCC-CCCCC--cCCCCCEEEcCCCcCC-cCCC---------------
Confidence 3566777776654 5555443 6777777777743 34554 4567777777777632 2331
Q ss_pred cceeecccccccCCchhhhcCCCCCcceEEEeCCCCCccccccCCccccceEeeccCcCcccccCCcCccccCCCCcccc
Q 038861 849 GTIEIEECNALESLPEAWMQDSSTSLESLNIDGCDSLTYIARIQLPPSLRRLIISDCYNLRTLTGDQGICSSRSGRTSLT 928 (1165)
Q Consensus 849 ~~~~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~l~ 928 (1165)
.+++|++|++++|.... ++. .+++|+.|++++|. +..++.
T Consensus 99 ---------------------~l~~L~~L~Ls~N~l~~-l~~--~l~~L~~L~L~~N~-l~~lp~--------------- 138 (622)
T 3g06_A 99 ---------------------LPPGLLELSIFSNPLTH-LPA--LPSGLCKLWIFGNQ-LTSLPV--------------- 138 (622)
T ss_dssp ---------------------CCTTCCEEEECSCCCCC-CCC--CCTTCCEEECCSSC-CSCCCC---------------
T ss_pred ---------------------CCCCCCEEECcCCcCCC-CCC--CCCCcCEEECCCCC-CCcCCC---------------
Confidence 14667777777765333 322 45667777776663 211110
Q ss_pred ccCCCCcccccccceeecccccccccccCCCCCCCccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCC
Q 038861 929 SFSSENELPATLEQLEVRFCSNLAFLSRNGNLPQALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNL 1008 (1165)
Q Consensus 929 ~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l 1008 (1165)
.+++|++|++++|.+.+ +|. ..++|+.|++++|.+.+ +| ..+
T Consensus 139 -------------------------------~l~~L~~L~Ls~N~l~~-l~~--~~~~L~~L~L~~N~l~~-l~---~~~ 180 (622)
T 3g06_A 139 -------------------------------LPPGLQELSVSDNQLAS-LPA--LPSELCKLWAYNNQLTS-LP---MLP 180 (622)
T ss_dssp -------------------------------CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CC---CCC
T ss_pred -------------------------------CCCCCCEEECcCCcCCC-cCC--ccCCCCEEECCCCCCCC-Cc---ccC
Confidence 11457777887775443 332 22678888888887755 45 456
Q ss_pred CCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCCCCCCCcceEEEe
Q 038861 1009 HHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPEDGFPTNLESLEVH 1088 (1165)
Q Consensus 1009 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~ 1088 (1165)
++|+.|++++|.+.+ +|.. +++|+.|++++|.+.. +|. .+++|+.|++++|.+. .+| ..+++|+.|+++
T Consensus 181 ~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~-~lp--~~l~~L~~L~Ls 249 (622)
T 3g06_A 181 SGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLT-SLP--VLPSELKELMVS 249 (622)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCS-CCC--CCCTTCCEEECC
T ss_pred CCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccC-cCC--CCCCcCcEEECC
Confidence 788888888888655 3332 3678888888887664 443 3478888888888874 455 466888888888
Q ss_pred cCCCCCcccccccccCCCCcEEEEecCCCCcccCC-CCCCcccEEEecCCCCcccHHHhhhc
Q 038861 1089 DLKISKPLFEWGLNKFSSLRELQITGGCPVLLSSP-WFPASLTVLHISYMPNLESLSLIVEN 1149 (1165)
Q Consensus 1089 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~ 1149 (1165)
+|++.. ++. .+++|+.|++++|.+..++.. .-.++|+.|++++|+.....+..+..
T Consensus 250 ~N~L~~-lp~----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 250 GNRLTS-LPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp SSCCSC-CCC----CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred CCCCCc-CCc----ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 888874 332 567888888888876644321 12467888888887766555554443
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=4.4e-19 Score=193.90 Aligned_cols=131 Identities=18% Similarity=0.157 Sum_probs=58.1
Q ss_pred CccEEEEcCCCCchhhhhhccc-Cccceeeeecccccc-cCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEe
Q 038861 963 ALKYLEVSYCSKLESLAERLDN-TSLEVIAISYLENLK-SLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTI 1040 (1165)
Q Consensus 963 ~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L 1040 (1165)
+|++|++++|...+..+..+.. ++|++|++++|.+.+ .+|..+..+++|++|++++|.+.+..|..+..+++|+.|++
T Consensus 127 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 206 (306)
T 2z66_A 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206 (306)
T ss_dssp TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEEC
Confidence 3555555555444333333322 444444444444433 23444444444444444444444444444444444444444
Q ss_pred ecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCC-CCcceEEEecCCCC
Q 038861 1041 GYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFP-TNLESLEVHDLKIS 1093 (1165)
Q Consensus 1041 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~-~~L~~L~l~~n~~~ 1093 (1165)
++|.+.+..+..+..+++|+.|++++|++.+..|.. ..+ ++|+.|++++|++.
T Consensus 207 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp TTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 444444433334444444444444444443333332 222 24444444444443
No 57
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=8e-22 Score=230.43 Aligned_cols=194 Identities=20% Similarity=0.085 Sum_probs=130.0
Q ss_pred CCccEEEEcCCCCchhh-----hhhcc-cCccceeeeeccccccc----CCcccCCCCCCCEEEEeCCCCCccccCCC--
Q 038861 962 QALKYLEVSYCSKLESL-----AERLD-NTSLEVIAISYLENLKS----LPAGLHNLHHLQELKVYGCPNLESFPEGG-- 1029 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~~-----~~~~~-~~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~L~L~~n~~~~~~~~~~-- 1029 (1165)
++|++|++++|.+.... +.... .++|++|++++|.+... ++..+..+++|++|++++|.+....+..+
T Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 306 (461)
T 1z7x_W 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE 306 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHH
Confidence 56888899888654432 22222 38899999999987654 56677778999999999998654322222
Q ss_pred ---CCCCCcCeEEeecCCCCCc----CCcccCCCCCCceeeeccCCCCcccCCC------CCCCCcceEEEecCCCCC--
Q 038861 1030 ---LPSTKLTKLTIGYCENLKA----LPNCMHNLTSLLHLEIGWCRSLVSFPED------GFPTNLESLEVHDLKISK-- 1094 (1165)
Q Consensus 1030 ---~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~p~~------~~~~~L~~L~l~~n~~~~-- 1094 (1165)
...++|++|++++|.+... ++..+..+++|++|++++|++....+.. ...++|+.|++++|++.+
T Consensus 307 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~ 386 (461)
T 1z7x_W 307 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS 386 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhh
Confidence 2336899999999987764 4556777899999999999874432221 126789999999999874
Q ss_pred --cccccccccCCCCcEEEEecCCCCcccCCC-------CCCcccEEEecCCCCcccHHHh----hhcCCccceE
Q 038861 1095 --PLFEWGLNKFSSLRELQITGGCPVLLSSPW-------FPASLTVLHISYMPNLESLSLI----VENLTSLEIL 1156 (1165)
Q Consensus 1095 --~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-------~~~~L~~L~l~~~~~l~~l~~~----~~~l~~L~~L 1156 (1165)
.++. .+..+++|++|++++|.+....... ...+|+.|++.++..-...+.. ....|.|+.+
T Consensus 387 ~~~l~~-~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~~~~p~l~i~ 460 (461)
T 1z7x_W 387 CSSLAA-TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460 (461)
T ss_dssp HHHHHH-HHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred HHHHHH-HHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHHhccCCCcEee
Confidence 3333 4778899999999988665432211 1236888888776554333322 2345555543
No 58
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=4.7e-20 Score=223.08 Aligned_cols=177 Identities=13% Similarity=-0.027 Sum_probs=88.3
Q ss_pred CCccEEEEcCCCCchhhhhhccc-Cccceeeeec-----------cccccc-CCcccCCCCCCCEEEEeCCCCCccccCC
Q 038861 962 QALKYLEVSYCSKLESLAERLDN-TSLEVIAISY-----------LENLKS-LPAGLHNLHHLQELKVYGCPNLESFPEG 1028 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~-----------n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~~~~ 1028 (1165)
++|+.|+++++-....++..... ++|++|++++ +.+... ++....++++|++|+++.|.+.+..+..
T Consensus 318 ~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~ 397 (592)
T 3ogk_B 318 PNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLES 397 (592)
T ss_dssp TTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHH
T ss_pred cCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHH
Confidence 45666776633222222322222 6677777773 222221 1222334667777777666655444333
Q ss_pred CCC-CCCcCeEEeec----CCCCCc-----CCcccCCCCCCceeeeccCC--CCcccCCC--CCCCCcceEEEecCCCCC
Q 038861 1029 GLP-STKLTKLTIGY----CENLKA-----LPNCMHNLTSLLHLEIGWCR--SLVSFPED--GFPTNLESLEVHDLKISK 1094 (1165)
Q Consensus 1029 ~~~-l~~L~~L~L~~----n~~~~~-----~~~~~~~l~~L~~L~l~~n~--~~~~~p~~--~~~~~L~~L~l~~n~~~~ 1094 (1165)
+.. +++|+.|++++ |.+.+. ++..+.++++|+.|++++|. +....+.. ..+++|+.|++++|++.+
T Consensus 398 l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 477 (592)
T 3ogk_B 398 IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESD 477 (592)
T ss_dssp HHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSH
T ss_pred HHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCH
Confidence 333 56677777752 233221 22224556677777776543 22211111 235667777777776654
Q ss_pred cccccccccCCCCcEEEEecCCCCcccCCC---CCCcccEEEecCCC
Q 038861 1095 PLFEWGLNKFSSLRELQITGGCPVLLSSPW---FPASLTVLHISYMP 1138 (1165)
Q Consensus 1095 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---~~~~L~~L~l~~~~ 1138 (1165)
...+..+.++++|++|++++|......... ..++|++|++++|+
T Consensus 478 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 478 EGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 333333456677777777765432111111 13566666666665
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=6.3e-19 Score=190.32 Aligned_cols=200 Identities=18% Similarity=0.040 Sum_probs=143.4
Q ss_pred CCccEEEEcCCCCchhh-hhhccc-CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEE
Q 038861 962 QALKYLEVSYCSKLESL-AERLDN-TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLT 1039 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~~-~~~~~~-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 1039 (1165)
++|++|++++|...+.+ +..+.. ++|++|++++|.+.+..|..+.++++|++|++++|.+.+..+..+..+++|++|+
T Consensus 80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159 (285)
T ss_dssp TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE
Confidence 45777788777633333 444444 8888888888888877788888899999999999987777777788888999999
Q ss_pred eecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCCCC
Q 038861 1040 IGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCPV 1118 (1165)
Q Consensus 1040 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 1118 (1165)
+++|.+....+..|.++++|+.|++++|.+.+..|.. ..+++|+.|++++|++.+. ++..+..+++|+.|++++|...
T Consensus 160 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL-PTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC-CHHHHTTCTTCCEEECCSSCEE
T ss_pred CCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcC-CHHHcccCcccCEEeccCCCcc
Confidence 9998887766667888899999999999887666665 7788999999999988864 4445888899999999887432
Q ss_pred ccc-CCCCCCcccEEEecCCCCcccHHHhh--hcCCccceEeecCCC
Q 038861 1119 LLS-SPWFPASLTVLHISYMPNLESLSLIV--ENLTSLEILILCKCP 1162 (1165)
Q Consensus 1119 ~~~-~~~~~~~L~~L~l~~~~~l~~l~~~~--~~l~~L~~L~l~~c~ 1162 (1165)
.-. ..++...++.+..+.+......|..+ ..+..++..++.+|.
T Consensus 239 c~~~~~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C~ 285 (285)
T 1ozn_A 239 CDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA 285 (285)
T ss_dssp CSGGGHHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC-
T ss_pred CCCCcHHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccCC
Confidence 111 00122334444455544444455443 346677777888873
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=2.1e-18 Score=188.47 Aligned_cols=176 Identities=17% Similarity=0.160 Sum_probs=102.3
Q ss_pred CCccEEEEcCCCCchhhhhhcc-cCccceeeeecccccccCC-cccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEE
Q 038861 962 QALKYLEVSYCSKLESLAERLD-NTSLEVIAISYLENLKSLP-AGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLT 1039 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 1039 (1165)
++|++|++++|.+.. ++..+. .++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 78 ~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 156 (306)
T 2z66_A 78 TSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156 (306)
T ss_dssp SCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE
T ss_pred cccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE
Confidence 346666666664432 332222 2666666666666655443 4566666666666666666655666666666666666
Q ss_pred eecCCCCC-cCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCCC
Q 038861 1040 IGYCENLK-ALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCP 1117 (1165)
Q Consensus 1040 L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 1117 (1165)
+++|.+.+ ..|..+..+++|++|++++|.+.+..|.. ..+++|+.|++++|++.+. +...+..+++|+.|++++|.+
T Consensus 157 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL-DTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC-CSGGGTTCTTCCEEECTTSCC
T ss_pred CCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCcc-ChhhccCcccCCEeECCCCCC
Confidence 66666554 35556666666666666666665444443 5566666666666666543 222356666666666666655
Q ss_pred CcccCCC---CCCcccEEEecCCCC
Q 038861 1118 VLLSSPW---FPASLTVLHISYMPN 1139 (1165)
Q Consensus 1118 ~~~~~~~---~~~~L~~L~l~~~~~ 1139 (1165)
....... ++++|+.|++++|+.
T Consensus 236 ~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 236 MTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred cccCHHHHHhhhccCCEEEccCCCe
Confidence 4433222 334666667666654
No 61
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.78 E-value=1.2e-18 Score=187.22 Aligned_cols=214 Identities=22% Similarity=0.180 Sum_probs=174.3
Q ss_pred ccccccccccCCCCCCCccEEEEcCCCCchhhhhhccc-CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccc
Q 038861 947 FCSNLAFLSRNGNLPQALKYLEVSYCSKLESLAERLDN-TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESF 1025 (1165)
Q Consensus 947 ~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~ 1025 (1165)
.|...........+|+++++|++++|.+.+..+..+.. ++|++|++++|.+.+..+..+.++++|++|++++|.+.+..
T Consensus 13 ~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (276)
T 2z62_A 13 QCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92 (276)
T ss_dssp ECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred EecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC
Confidence 45554444455567788999999999876655545544 99999999999998877888999999999999999988888
Q ss_pred cCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcc-cCCC-CCCCCcceEEEecCCCCCccccccccc
Q 038861 1026 PEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVS-FPED-GFPTNLESLEVHDLKISKPLFEWGLNK 1103 (1165)
Q Consensus 1026 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~ 1103 (1165)
+..+..+++|++|++++|.+....+..+.++++|++|++++|.+.+. +|.. ..+++|+.|++++|++.+. +...+..
T Consensus 93 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~ 171 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-YCTDLRV 171 (276)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE-CGGGGHH
T ss_pred hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC-CHHHhhh
Confidence 88899999999999999999887777899999999999999998552 4555 7789999999999999864 3344777
Q ss_pred CCCCc----EEEEecCCCCcccCCCC-CCcccEEEecCCCCcccHHHh-hhcCCccceEeecCCC
Q 038861 1104 FSSLR----ELQITGGCPVLLSSPWF-PASLTVLHISYMPNLESLSLI-VENLTSLEILILCKCP 1162 (1165)
Q Consensus 1104 l~~L~----~L~l~~n~~~~~~~~~~-~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~ 1162 (1165)
+++|+ .|++++|.+..+....+ ..+|+.|++++|. ++.++.. +..+++|++|++++||
T Consensus 172 l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp HHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSC
T ss_pred hhhccccceeeecCCCcccccCccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCc
Confidence 77776 89999998876655443 3489999999966 6666654 6889999999999765
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=3.2e-18 Score=197.36 Aligned_cols=222 Identities=15% Similarity=0.113 Sum_probs=178.0
Q ss_pred ccccceeecccccccccccCCCCCCCccEEEEcCCCCchhhhhhccc-CccceeeeecccccccCCcccCCCCCCCEEEE
Q 038861 938 ATLEQLEVRFCSNLAFLSRNGNLPQALKYLEVSYCSKLESLAERLDN-TSLEVIAISYLENLKSLPAGLHNLHHLQELKV 1016 (1165)
Q Consensus 938 ~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 1016 (1165)
..++.|.+..+..-........-.++|+.|++++|.+....+..+.. ++|++|+|++|.+....+..|..+++|++|+|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 44555555443322221111222367999999999877766666665 99999999999998777778999999999999
Q ss_pred eCCCCCccccCCCCCCCCcCeEEeecCCCCCcCC-cccCCCCCCceeeeccCCCCcccCCCCCCCCcceEEEecCCCCCc
Q 038861 1017 YGCPNLESFPEGGLPSTKLTKLTIGYCENLKALP-NCMHNLTSLLHLEIGWCRSLVSFPEDGFPTNLESLEVHDLKISKP 1095 (1165)
Q Consensus 1017 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~ 1095 (1165)
++|.+....+..+..+++|+.|++++|+..+.++ ..|.++++|++|++++|.+ ..+|....+++|+.|++++|++.+.
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL-REIPNLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC-SSCCCCTTCSSCCEEECTTSCCCEE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC-ccccccCCCcccCEEECCCCccCcc
Confidence 9999888777789999999999999977666555 4789999999999999998 5677778899999999999999874
Q ss_pred ccccccccCCCCcEEEEecCCCCcccCCCC--CCcccEEEecCCCCcccHH-HhhhcCCccceEeecCCC
Q 038861 1096 LFEWGLNKFSSLRELQITGGCPVLLSSPWF--PASLTVLHISYMPNLESLS-LIVENLTSLEILILCKCP 1162 (1165)
Q Consensus 1096 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~ 1162 (1165)
. +..|.++++|+.|++++|.+..+....+ .++|+.|+|++|. +..++ ..+..+++|+.|++++||
T Consensus 223 ~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 223 R-PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp C-TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEECCSSC
T ss_pred C-hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC-CCccChhHhccccCCCEEEcCCCC
Confidence 4 4559999999999999998877765543 4799999999964 55665 447889999999999997
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=3e-18 Score=198.31 Aligned_cols=223 Identities=20% Similarity=0.168 Sum_probs=179.2
Q ss_pred cccccceeecccccccccccCCCCCCCccEEEEcCCCCchhhhhhccc-CccceeeeecccccccCCcccCCCCCCCEEE
Q 038861 937 PATLEQLEVRFCSNLAFLSRNGNLPQALKYLEVSYCSKLESLAERLDN-TSLEVIAISYLENLKSLPAGLHNLHHLQELK 1015 (1165)
Q Consensus 937 ~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 1015 (1165)
|+.++.|.+..+..-........-.++|+.|++++|.+.+..+..+.. ++|++|+|++|.+.+..+..|.++++|++|+
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 445556655554322221222222367999999999887766666665 9999999999999877777899999999999
Q ss_pred EeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCc-ccCCCCCCceeeeccCCCCcccCCCCCCCCcceEEEecCCCCC
Q 038861 1016 VYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPN-CMHNLTSLLHLEIGWCRSLVSFPEDGFPTNLESLEVHDLKISK 1094 (1165)
Q Consensus 1016 L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~ 1094 (1165)
|++|.+.+..+..+..+++|++|++++|+..+.++. .|.++++|+.|++++|.+ ..+|....+++|+.|++++|++.+
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI-KDMPNLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC-SSCCCCTTCTTCCEEECTTSCCSE
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc-cccccccccccccEEECcCCcCcc
Confidence 999998877777899999999999999777666654 689999999999999999 456777889999999999999987
Q ss_pred cccccccccCCCCcEEEEecCCCCcccCCCC--CCcccEEEecCCCCcccHHH-hhhcCCccceEeecCCC
Q 038861 1095 PLFEWGLNKFSSLRELQITGGCPVLLSSPWF--PASLTVLHISYMPNLESLSL-IVENLTSLEILILCKCP 1162 (1165)
Q Consensus 1095 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~ 1162 (1165)
.. +..|.++++|+.|++++|.+..+....+ .++|+.|++++| .+..++. .+..+++|+.|++++||
T Consensus 233 ~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 233 IR-PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp EC-GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred cC-cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 54 4459999999999999998877665543 479999999997 4666654 47889999999999997
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=3.2e-19 Score=195.40 Aligned_cols=171 Identities=9% Similarity=-0.019 Sum_probs=111.5
Q ss_pred CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCccc-CCCCCCceee
Q 038861 985 TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCM-HNLTSLLHLE 1063 (1165)
Q Consensus 985 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-~~l~~L~~L~ 1063 (1165)
++|++|++++|.+.+..+. .+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+ ..+++|++|+
T Consensus 99 ~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 175 (317)
T 3o53_A 99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (317)
T ss_dssp TTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEE
Confidence 4455555555555443332 24567777777777666666667777777777777777766655555 3677777777
Q ss_pred eccCCCCcccCCCCCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCCCCcccCC-CCCCcccEEEecCCCCc-c
Q 038861 1064 IGWCRSLVSFPEDGFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCPVLLSSP-WFPASLTVLHISYMPNL-E 1141 (1165)
Q Consensus 1064 l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~~~~l-~ 1141 (1165)
+++|.+. .++....+++|+.|++++|++.+. ++. +..+++|+.|++++|.+..++.. ...++|+.|++++|+.. .
T Consensus 176 L~~N~l~-~~~~~~~l~~L~~L~Ls~N~l~~l-~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~ 252 (317)
T 3o53_A 176 LQYNFIY-DVKGQVVFAKLKTLDLSSNKLAFM-GPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG 252 (317)
T ss_dssp CTTSCCC-EEECCCCCTTCCEEECCSSCCCEE-CGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHH
T ss_pred CCCCcCc-ccccccccccCCEEECCCCcCCcc-hhh-hcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCc
Confidence 7777773 334445577777777777777652 333 67777777777777766654332 13457788888877765 4
Q ss_pred cHHHhhhcCCccceEeecCC
Q 038861 1142 SLSLIVENLTSLEILILCKC 1161 (1165)
Q Consensus 1142 ~l~~~~~~l~~L~~L~l~~c 1161 (1165)
.++..+..++.|+.+++.+|
T Consensus 253 ~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 253 TLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp HHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHhccccceEEECCCc
Confidence 66777777888877777643
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=1.7e-17 Score=195.69 Aligned_cols=54 Identities=26% Similarity=0.292 Sum_probs=37.1
Q ss_pred CCcCceEecCCCCccccchhhcCCCCcceEEEcCCCCccccCCCCCcccccEEEeccCCCC
Q 038861 768 VTEDDLELSNCKGLTKLPQALLTLSSLRELRISGCASLVSFPQAALPSQLRTFKIEHCNAL 828 (1165)
Q Consensus 768 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~ 828 (1165)
++|++|++++|.+. .+|. .+++|++|++++|.. ..+|. .+++|++|++++|.+.
T Consensus 61 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l-~~lp~--~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQL-TSLPV--LPPGLLELSIFSNPLT 114 (622)
T ss_dssp TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCC-SCCCC--CCTTCCEEEECSCCCC
T ss_pred CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcC-CcCCC--CCCCCCEEECcCCcCC
Confidence 56777888877654 4454 567788888888753 44554 5677888888887643
No 66
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=2.1e-18 Score=192.69 Aligned_cols=158 Identities=16% Similarity=0.113 Sum_probs=94.7
Q ss_pred Cccceeeeeccc-ccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceee
Q 038861 985 TSLEVIAISYLE-NLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLE 1063 (1165)
Q Consensus 985 ~~L~~L~L~~n~-~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 1063 (1165)
++|++|++++|. +....+..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|+.|+
T Consensus 149 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 228 (353)
T 2z80_A 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 228 (353)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEE
T ss_pred CCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEE
Confidence 566666666663 3333455666677777777777776666666677777777777777765443333344567777777
Q ss_pred eccCCCCcccCCC----CCCCCcceEEEecCCCCCc----ccccccccCCCCcEEEEecCCCCcccCCC--CCCcccEEE
Q 038861 1064 IGWCRSLVSFPED----GFPTNLESLEVHDLKISKP----LFEWGLNKFSSLRELQITGGCPVLLSSPW--FPASLTVLH 1133 (1165)
Q Consensus 1064 l~~n~~~~~~p~~----~~~~~L~~L~l~~n~~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~~L~~L~ 1133 (1165)
+++|.+.+..+.. .....++.++++++.+.+. ++ ..+..+++|+.|++++|....++... -.++|++|+
T Consensus 229 L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~-~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~ 307 (353)
T 2z80_A 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM-KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIW 307 (353)
T ss_dssp EESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHH-HHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCccccccccccccccccchhhccccccccccCcchhhhH-HHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEE
Confidence 7777664432221 3355667777777766542 22 23566777777777777666554432 245677777
Q ss_pred ecCCCCcccH
Q 038861 1134 ISYMPNLESL 1143 (1165)
Q Consensus 1134 l~~~~~l~~l 1143 (1165)
+++|+.....
T Consensus 308 L~~N~~~~~~ 317 (353)
T 2z80_A 308 LHTNPWDCSC 317 (353)
T ss_dssp CCSSCBCCCH
T ss_pred eeCCCccCcC
Confidence 7776654443
No 67
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.77 E-value=3.1e-20 Score=224.68 Aligned_cols=363 Identities=14% Similarity=0.085 Sum_probs=185.7
Q ss_pred CCccceeeecCCcccccCCC----ccccc-cceEEeeccccc-----ccccCCCCCceEEEEecCCccccc----Ccccc
Q 038861 677 FPKLRKLSLFSCSKLQGALP----KRLLL-LERLVIQSCKQL-----LVTIQCLPALSELQIKGCKRVVLS----SPMDL 742 (1165)
Q Consensus 677 ~~~L~~L~l~~c~~l~~~~p----~~l~~-L~~L~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~ 742 (1165)
+++|++|++++| .+++..+ ..++. |+.|++..|... ......+++|++|++++|. +... .+..+
T Consensus 111 ~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 111 LRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS-FSEKDGKWLHELA 188 (592)
T ss_dssp CTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE-EECCCSHHHHHHH
T ss_pred CCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccc-ccCcchhHHHHHH
Confidence 567777777764 3332211 11223 666666655522 1123357788888888764 2211 11122
Q ss_pred cccccccccccceeEeccCC------CccccCCcCceEecCCCCccccchhhcCCCCcceEEEcCCCCccc----cCCCC
Q 038861 743 SSLKSVLLGEMANEVISGCP------QLLSLVTEDDLELSNCKGLTKLPQALLTLSSLRELRISGCASLVS----FPQAA 812 (1165)
Q Consensus 743 ~~l~~l~~~~l~~~~i~~~~------~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~----~~~~~ 812 (1165)
..++.|+.++++.+.++... .+..+++|++|++++|...+ +|..+..+++|++|+++++..... .....
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 23344444455544443221 12234555555555554332 444455555555555553321110 01122
Q ss_pred CcccccEEEeccCCCCCCChHHHhhcCccccccccccceeecccccccCCchhhhcCCCCCcceEEEeCCCCCcccc---
Q 038861 813 LPSQLRTFKIEHCNALESLPEAWMRNSNSSLQSLEIGTIEIEECNALESLPEAWMQDSSTSLESLNIDGCDSLTYIA--- 889 (1165)
Q Consensus 813 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~--- 889 (1165)
.+++|+.|+++++. ...++. ....+++|++|++++|. ++...
T Consensus 268 ~~~~L~~L~l~~~~-~~~l~~---------------------------------~~~~~~~L~~L~Ls~~~-l~~~~~~~ 312 (592)
T 3ogk_B 268 FPRKLCRLGLSYMG-PNEMPI---------------------------------LFPFAAQIRKLDLLYAL-LETEDHCT 312 (592)
T ss_dssp CCTTCCEEEETTCC-TTTGGG---------------------------------GGGGGGGCCEEEETTCC-CCHHHHHH
T ss_pred ccccccccCccccc-hhHHHH---------------------------------HHhhcCCCcEEecCCCc-CCHHHHHH
Confidence 23445555444432 111111 11236788888888877 33221
Q ss_pred ccCCccccceEeeccCcCcccccCCcCccccCCCCccccccCCCCcccccccceeecccccccccccCCCCCCCccEEEE
Q 038861 890 RIQLPPSLRRLIISDCYNLRTLTGDQGICSSRSGRTSLTSFSSENELPATLEQLEVRFCSNLAFLSRNGNLPQALKYLEV 969 (1165)
Q Consensus 890 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l 969 (1165)
....+++|++|++.++-.-..+. .+ ....++|++|++
T Consensus 313 ~~~~~~~L~~L~L~~~~~~~~l~-----------------------------~~--------------~~~~~~L~~L~L 349 (592)
T 3ogk_B 313 LIQKCPNLEVLETRNVIGDRGLE-----------------------------VL--------------AQYCKQLKRLRI 349 (592)
T ss_dssp HHTTCTTCCEEEEEGGGHHHHHH-----------------------------HH--------------HHHCTTCCEEEE
T ss_pred HHHhCcCCCEEeccCccCHHHHH-----------------------------HH--------------HHhCCCCCEEEe
Confidence 24667788888777431000000 00 000145777777
Q ss_pred cC----------CCCchh--hhhhcc-cCccceeeeecccccccCCcccCC-CCCCCEEEEeC----CCCCcc-----cc
Q 038861 970 SY----------CSKLES--LAERLD-NTSLEVIAISYLENLKSLPAGLHN-LHHLQELKVYG----CPNLES-----FP 1026 (1165)
Q Consensus 970 ~~----------~~~~~~--~~~~~~-~~~L~~L~L~~n~~~~~~p~~~~~-l~~L~~L~L~~----n~~~~~-----~~ 1026 (1165)
++ |...+. ++.... .++|++|+++.|.+.+..+..+.. +++|++|++++ |.+.+. ++
T Consensus 350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~ 429 (592)
T 3ogk_B 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR 429 (592)
T ss_dssp ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHH
T ss_pred ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHH
Confidence 73 433332 222222 377888888777776655555544 77888888863 233221 22
Q ss_pred CCCCCCCCcCeEEeecCC--CCCcCCccc-CCCCCCceeeeccCCCCc-ccCCC-CCCCCcceEEEecCCCCCccccccc
Q 038861 1027 EGGLPSTKLTKLTIGYCE--NLKALPNCM-HNLTSLLHLEIGWCRSLV-SFPED-GFPTNLESLEVHDLKISKPLFEWGL 1101 (1165)
Q Consensus 1027 ~~~~~l~~L~~L~L~~n~--~~~~~~~~~-~~l~~L~~L~l~~n~~~~-~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~ 1101 (1165)
..+..+++|++|++++|. +....+..+ ..+++|+.|++++|++.+ .++.. ..+++|+.|++++|++.+...+..+
T Consensus 430 ~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 509 (592)
T 3ogk_B 430 SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAV 509 (592)
T ss_dssp HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHH
T ss_pred HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHH
Confidence 224456788888887654 333222223 347778888888887643 22222 5567888888888887654444445
Q ss_pred ccCCCCcEEEEecCCCCcc
Q 038861 1102 NKFSSLRELQITGGCPVLL 1120 (1165)
Q Consensus 1102 ~~l~~L~~L~l~~n~~~~~ 1120 (1165)
..+++|++|++++|.+...
T Consensus 510 ~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 510 TKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHCSSCCEEEEESCBCCTT
T ss_pred HhcCccCeeECcCCcCCHH
Confidence 6678888888888765433
No 68
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=4.5e-18 Score=196.83 Aligned_cols=226 Identities=16% Similarity=0.079 Sum_probs=151.9
Q ss_pred CCcCceEecCCCCccccchhhcCCCCcceEEEcCCCCccccC-CCCCcccccEEEeccCCCCCCChHHHhhcCccccccc
Q 038861 768 VTEDDLELSNCKGLTKLPQALLTLSSLRELRISGCASLVSFP-QAALPSQLRTFKIEHCNALESLPEAWMRNSNSSLQSL 846 (1165)
Q Consensus 768 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l 846 (1165)
++++.|++++|.+.+..|..|.++++|+.|++++|......+ .+..+++|++|++++|.+....+..+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----------- 143 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAF----------- 143 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTS-----------
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhh-----------
Confidence 466778888887777777778888888888888875543332 23345778888888777443222211
Q ss_pred cccceeecccccccCCchhhhcCCCCCcceEEEeCCCCCcccc-ccCCccccceEeeccCcCcccccCCcCccccCCCCc
Q 038861 847 EIGTIEIEECNALESLPEAWMQDSSTSLESLNIDGCDSLTYIA-RIQLPPSLRRLIISDCYNLRTLTGDQGICSSRSGRT 925 (1165)
Q Consensus 847 ~l~~~~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 925 (1165)
..+++|++|++++|......+ .+..+++|++|++++|..+..++...
T Consensus 144 ----------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~---------- 191 (452)
T 3zyi_A 144 ----------------------EYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA---------- 191 (452)
T ss_dssp ----------------------SSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT----------
T ss_pred ----------------------cccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhh----------
Confidence 225566666666665433222 34556666666666655444332211
Q ss_pred cccccCCCCcccccccceeecccccccccccCCCCCCCccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCccc
Q 038861 926 SLTSFSSENELPATLEQLEVRFCSNLAFLSRNGNLPQALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGL 1005 (1165)
Q Consensus 926 ~l~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~ 1005 (1165)
+.. .++|+.|++++|.+. .+|.....++|+.|++++|.+.+..|..|
T Consensus 192 --------------~~~------------------l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 238 (452)
T 3zyi_A 192 --------------FEG------------------LFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMSGNHFPEIRPGSF 238 (452)
T ss_dssp --------------TTT------------------CTTCCEEECTTSCCS-SCCCCTTCTTCCEEECTTSCCSEECGGGG
T ss_pred --------------ccC------------------CCCCCEEECCCCccc-ccccccccccccEEECcCCcCcccCcccc
Confidence 100 145777777777543 34444444788888888888877778888
Q ss_pred CCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCC
Q 038861 1006 HNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRS 1069 (1165)
Q Consensus 1006 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 1069 (1165)
.++++|++|++++|.+.+..+..+..+++|+.|+|++|.+....+..|..+++|+.|++++|++
T Consensus 239 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 239 HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred cCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 8888888888888888877788888888888888888888777777778888888888888875
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=2.3e-19 Score=196.52 Aligned_cols=237 Identities=14% Similarity=0.043 Sum_probs=163.1
Q ss_pred ccCCcCceEecCCCCccccchhhcCCCCcceEEEcCCCCccccCCCCCcccccEEEeccCCCCCCChHHHhhcCcccccc
Q 038861 766 SLVTEDDLELSNCKGLTKLPQALLTLSSLRELRISGCASLVSFPQAALPSQLRTFKIEHCNALESLPEAWMRNSNSSLQS 845 (1165)
Q Consensus 766 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 845 (1165)
.+++|++|++++|.+....|..+..+++|++|++++|...... ....+++|++|++++|.+.. ++
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~l~~L~~L~Ls~n~l~~-l~------------- 96 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQE-LL------------- 96 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-EETTCTTCCEEECCSSEEEE-EE-------------
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-hhhhcCCCCEEECcCCcccc-cc-------------
Confidence 4567788888888877777778888888888888888554332 24445666666666665211 10
Q ss_pred ccccceeecccccccCCchhhhcCCCCCcceEEEeCCCCCccccccCCccccceEeeccCcCcccccCCcCccccCCCCc
Q 038861 846 LEIGTIEIEECNALESLPEAWMQDSSTSLESLNIDGCDSLTYIARIQLPPSLRRLIISDCYNLRTLTGDQGICSSRSGRT 925 (1165)
Q Consensus 846 l~l~~~~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 925 (1165)
..++|++|++++|......+ ..+
T Consensus 97 ------------------------~~~~L~~L~l~~n~l~~~~~--~~~------------------------------- 119 (317)
T 3o53_A 97 ------------------------VGPSIETLHAANNNISRVSC--SRG------------------------------- 119 (317)
T ss_dssp ------------------------ECTTCCEEECCSSCCSEEEE--CCC-------------------------------
T ss_pred ------------------------CCCCcCEEECCCCccCCcCc--ccc-------------------------------
Confidence 02455555555543221111 011
Q ss_pred cccccCCCCcccccccceeecccccccccccCCCCCCCccEEEEcCCCCchhhhhhccc-CccceeeeecccccccCCcc
Q 038861 926 SLTSFSSENELPATLEQLEVRFCSNLAFLSRNGNLPQALKYLEVSYCSKLESLAERLDN-TSLEVIAISYLENLKSLPAG 1004 (1165)
Q Consensus 926 ~l~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~n~~~~~~p~~ 1004 (1165)
++|+.|++++|.+.+..+..+.. ++|++|++++|.+.+..+..
T Consensus 120 ------------------------------------~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (317)
T 3o53_A 120 ------------------------------------QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (317)
T ss_dssp ------------------------------------SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred ------------------------------------CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence 34666777777655544444443 78888888888887776666
Q ss_pred c-CCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCc
Q 038861 1005 L-HNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNL 1082 (1165)
Q Consensus 1005 ~-~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L 1082 (1165)
+ ..+++|++|++++|.+.+.. . ...+++|++|++++|.+.+. |..+..+++|+.|++++|++. .+|.. ..+++|
T Consensus 164 ~~~~l~~L~~L~L~~N~l~~~~-~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L 239 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNFIYDVK-G-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNL 239 (317)
T ss_dssp GGGGTTTCCEEECTTSCCCEEE-C-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTC
T ss_pred HhhccCcCCEEECCCCcCcccc-c-ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCC
Confidence 5 47889999999999876653 2 33478999999999998765 445888999999999999985 56665 778999
Q ss_pred ceEEEecCCCCCcccccccccCCCCcEEEEec
Q 038861 1083 ESLEVHDLKISKPLFEWGLNKFSSLRELQITG 1114 (1165)
Q Consensus 1083 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 1114 (1165)
+.|++++|++.....+..+..+++|+.+++++
T Consensus 240 ~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp CEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred CEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 99999999998333444588888999888874
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.77 E-value=6.1e-20 Score=200.61 Aligned_cols=197 Identities=17% Similarity=0.136 Sum_probs=164.3
Q ss_pred CCccEEEEcCCCCchhhhhhc--cc-CccceeeeecccccccCCcccCCC-----CCCCEEEEeCCCCCccccCCCCCCC
Q 038861 962 QALKYLEVSYCSKLESLAERL--DN-TSLEVIAISYLENLKSLPAGLHNL-----HHLQELKVYGCPNLESFPEGGLPST 1033 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~~~~~~--~~-~~L~~L~L~~n~~~~~~p~~~~~l-----~~L~~L~L~~n~~~~~~~~~~~~l~ 1033 (1165)
++|++|++++|.+.+.+|..+ .. ++|++|++++|.+.+. |..+..+ ++|++|++++|.+.+..|..+..++
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 579999999999888888764 33 9999999999999877 7777766 9999999999999888889999999
Q ss_pred CcCeEEeecCCCCCc--CCccc--CCCCCCceeeeccCCCCc--ccCCC--CCCCCcceEEEecCCCCCcccccccccCC
Q 038861 1034 KLTKLTIGYCENLKA--LPNCM--HNLTSLLHLEIGWCRSLV--SFPED--GFPTNLESLEVHDLKISKPLFEWGLNKFS 1105 (1165)
Q Consensus 1034 ~L~~L~L~~n~~~~~--~~~~~--~~l~~L~~L~l~~n~~~~--~~p~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~l~ 1105 (1165)
+|++|++++|.+.+. .+..+ ..+++|++|++++|.+.+ .++.. ..+++|+.|++++|++.+..+...+..++
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 999999999998765 23334 899999999999999852 22222 46789999999999999866545577889
Q ss_pred CCcEEEEecCCCCcccCCCCCCcccEEEecCCCCcccHHHhhhcCCccceEeecCCC
Q 038861 1106 SLRELQITGGCPVLLSSPWFPASLTVLHISYMPNLESLSLIVENLTSLEILILCKCP 1162 (1165)
Q Consensus 1106 ~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 1162 (1165)
+|++|++++|.+..++.. ++++|++|++++| .++.+|. +..+++|++|++++|+
T Consensus 254 ~L~~L~Ls~N~l~~ip~~-~~~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 254 QLNSLNLSFTGLKQVPKG-LPAKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp TCCEEECTTSCCSSCCSS-CCSEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCT
T ss_pred CCCEEECCCCccChhhhh-ccCCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCC
Confidence 999999999988855443 3489999999996 4666765 8899999999999996
No 71
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=6.2e-18 Score=194.94 Aligned_cols=226 Identities=15% Similarity=0.072 Sum_probs=139.9
Q ss_pred CCcCceEecCCCCccccchhhcCCCCcceEEEcCCCCccccC-CCCCcccccEEEeccCCCCCCChHHHhhcCccccccc
Q 038861 768 VTEDDLELSNCKGLTKLPQALLTLSSLRELRISGCASLVSFP-QAALPSQLRTFKIEHCNALESLPEAWMRNSNSSLQSL 846 (1165)
Q Consensus 768 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l 846 (1165)
++++.|++++|.+....+..|.++++|+.|++++|......+ .+..+++|++|++++|.+....+..+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----------- 132 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAF----------- 132 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTS-----------
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHh-----------
Confidence 455666676666666656666667777777777664332221 22334666666666665332222111
Q ss_pred cccceeecccccccCCchhhhcCCCCCcceEEEeCCCCCcccc-ccCCccccceEeeccCcCcccccCCcCccccCCCCc
Q 038861 847 EIGTIEIEECNALESLPEAWMQDSSTSLESLNIDGCDSLTYIA-RIQLPPSLRRLIISDCYNLRTLTGDQGICSSRSGRT 925 (1165)
Q Consensus 847 ~l~~~~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 925 (1165)
..+++|++|++++|......+ .+..+++|++|++++|..+..++...
T Consensus 133 ----------------------~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~---------- 180 (440)
T 3zyj_A 133 ----------------------VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA---------- 180 (440)
T ss_dssp ----------------------CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT----------
T ss_pred ----------------------hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcch----------
Confidence 124556666666554332222 34455566666666554333332110
Q ss_pred cccccCCCCcccccccceeecccccccccccCCCCCCCccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCccc
Q 038861 926 SLTSFSSENELPATLEQLEVRFCSNLAFLSRNGNLPQALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGL 1005 (1165)
Q Consensus 926 ~l~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~ 1005 (1165)
+.. .++|+.|++++|.+. .+|.....++|+.|+|++|.+.+..|..|
T Consensus 181 --------------~~~------------------l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 227 (440)
T 3zyj_A 181 --------------FEG------------------LSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIRPGSF 227 (440)
T ss_dssp --------------TTT------------------CSSCCEEECTTSCCS-SCCCCTTCSSCCEEECTTSCCCEECTTTT
T ss_pred --------------hhc------------------ccccCeecCCCCcCc-cccccCCCcccCEEECCCCccCccChhhh
Confidence 100 134666777766433 44444444778888888888777777888
Q ss_pred CCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCC
Q 038861 1006 HNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRS 1069 (1165)
Q Consensus 1006 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 1069 (1165)
.++++|++|++++|.+.+..+..+..+++|+.|+|++|.+....+..|..+++|+.|++++|++
T Consensus 228 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred ccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 8888888888888887777777888888888888888888777777778888888888888875
No 72
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=5.1e-18 Score=189.51 Aligned_cols=253 Identities=13% Similarity=0.056 Sum_probs=140.1
Q ss_pred CCcCceEecCCCCccccchhhcCCCCcceEEEcCCCCccccCC-CCCcccccEEEeccCCCCCCChHHHhhcCccccccc
Q 038861 768 VTEDDLELSNCKGLTKLPQALLTLSSLRELRISGCASLVSFPQ-AALPSQLRTFKIEHCNALESLPEAWMRNSNSSLQSL 846 (1165)
Q Consensus 768 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l 846 (1165)
+++++|++++|.+....+..+.++++|++|++++|......+. ...+++|++|++++|.+....+..+.
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---------- 121 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK---------- 121 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHT----------
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhC----------
Confidence 4778888888887766666788888888888888855443332 44568888888888875543332231
Q ss_pred cccceeecccccccCCchhhhcCCCCCcceEEEeCCCCCcccc--ccCCccccceEeeccCcCcccccCCcCccccCCCC
Q 038861 847 EIGTIEIEECNALESLPEAWMQDSSTSLESLNIDGCDSLTYIA--RIQLPPSLRRLIISDCYNLRTLTGDQGICSSRSGR 924 (1165)
Q Consensus 847 ~l~~~~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 924 (1165)
.+++|++|++++|....... .+..+++|++|++++|..+..+...
T Consensus 122 -----------------------~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---------- 168 (353)
T 2z80_A 122 -----------------------PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK---------- 168 (353)
T ss_dssp -----------------------TCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT----------
T ss_pred -----------------------CCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH----------
Confidence 13444444444443222111 2334444555555444322221100
Q ss_pred ccccccCCCCcccccccceeecccccccccccCCCCCCCccEEEEcCCCCchhhhhhccc-CccceeeeecccccccCCc
Q 038861 925 TSLTSFSSENELPATLEQLEVRFCSNLAFLSRNGNLPQALKYLEVSYCSKLESLAERLDN-TSLEVIAISYLENLKSLPA 1003 (1165)
Q Consensus 925 ~~l~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~n~~~~~~p~ 1003 (1165)
.+.. .++|+.|++++|.+.+..|..+.. ++|++|++++|.+....+.
T Consensus 169 --------------~~~~------------------l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 216 (353)
T 2z80_A 169 --------------DFAG------------------LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEI 216 (353)
T ss_dssp --------------TTTT------------------CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHH
T ss_pred --------------HccC------------------CCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhh
Confidence 0000 023555555555444443443333 5566666666555322222
Q ss_pred ccCCCCCCCEEEEeCCCCCccccCCC---CCCCCcCeEEeecCCCCC----cCCcccCCCCCCceeeeccCCCCcccCCC
Q 038861 1004 GLHNLHHLQELKVYGCPNLESFPEGG---LPSTKLTKLTIGYCENLK----ALPNCMHNLTSLLHLEIGWCRSLVSFPED 1076 (1165)
Q Consensus 1004 ~~~~l~~L~~L~L~~n~~~~~~~~~~---~~l~~L~~L~L~~n~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~p~~ 1076 (1165)
.+..+++|++|++++|.+.+..+..+ ...+.++.++++++.+.+ .+|..+.++++|+.|++++|++. .+|..
T Consensus 217 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~ 295 (353)
T 2z80_A 217 FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDG 295 (353)
T ss_dssp HHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTT
T ss_pred hhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHH
Confidence 23345666666666666554333322 224566677777766544 24566777778888888877774 55543
Q ss_pred --CCCCCcceEEEecCCCCCcc
Q 038861 1077 --GFPTNLESLEVHDLKISKPL 1096 (1165)
Q Consensus 1077 --~~~~~L~~L~l~~n~~~~~~ 1096 (1165)
..+++|+.|++++|++.+..
T Consensus 296 ~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 296 IFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp TTTTCTTCCEEECCSSCBCCCH
T ss_pred HHhcCCCCCEEEeeCCCccCcC
Confidence 56777888888888776543
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=3e-18 Score=198.81 Aligned_cols=169 Identities=9% Similarity=-0.029 Sum_probs=105.5
Q ss_pred CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccC-CCCCCceee
Q 038861 985 TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMH-NLTSLLHLE 1063 (1165)
Q Consensus 985 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~l~~L~~L~ 1063 (1165)
++|++|++++|.+.+..+. .+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+. .+++|+.|+
T Consensus 99 ~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (487)
T ss_dssp TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence 4455555555555444332 345677777777776666666666667777777777776666666554 567777777
Q ss_pred eccCCCCcccCCCCCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCCCCcccCC-CCCCcccEEEecCCCCc-c
Q 038861 1064 IGWCRSLVSFPEDGFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCPVLLSSP-WFPASLTVLHISYMPNL-E 1141 (1165)
Q Consensus 1064 l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~~~~l-~ 1141 (1165)
+++|.+.+. |....+++|+.|++++|++.+. ++. +..+++|+.|++++|....++.. ...++|+.|++++|+.. .
T Consensus 176 Ls~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~~-~~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 176 LQYNFIYDV-KGQVVFAKLKTLDLSSNKLAFM-GPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp CTTSCCCEE-ECCCCCTTCCEEECCSSCCCEE-CGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHH
T ss_pred cCCCccccc-cccccCCCCCEEECCCCCCCCC-CHh-HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCc
Confidence 777776433 4444567777777777777652 232 66677777777777665544332 13456777777776654 4
Q ss_pred cHHHhhhcCCccceEeec
Q 038861 1142 SLSLIVENLTSLEILILC 1159 (1165)
Q Consensus 1142 ~l~~~~~~l~~L~~L~l~ 1159 (1165)
.+|..+..++.|+.+++.
T Consensus 253 ~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 253 TLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred chHHHHHhCCCCcEEecc
Confidence 566667777777766664
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=1.8e-18 Score=200.64 Aligned_cols=236 Identities=14% Similarity=0.054 Sum_probs=165.4
Q ss_pred ccCCcCceEecCCCCccccchhhcCCCCcceEEEcCCCCccccCCCCCcccccEEEeccCCCCCCChHHHhhcCcccccc
Q 038861 766 SLVTEDDLELSNCKGLTKLPQALLTLSSLRELRISGCASLVSFPQAALPSQLRTFKIEHCNALESLPEAWMRNSNSSLQS 845 (1165)
Q Consensus 766 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 845 (1165)
..++|++|++++|.+.+..|..|..+++|++|++++|......+ ...+++|++|++++|.+.. ++.
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~~------------ 97 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-LLV------------ 97 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE-EEE------------
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC-CCC------------
Confidence 44578888888888887777888888888888888886543333 5556677777777665221 110
Q ss_pred ccccceeecccccccCCchhhhcCCCCCcceEEEeCCCCCccccccCCccccceEeeccCcCcccccCCcCccccCCCCc
Q 038861 846 LEIGTIEIEECNALESLPEAWMQDSSTSLESLNIDGCDSLTYIARIQLPPSLRRLIISDCYNLRTLTGDQGICSSRSGRT 925 (1165)
Q Consensus 846 l~l~~~~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 925 (1165)
.++|++|++++|......+ ..+
T Consensus 98 -------------------------~~~L~~L~L~~N~l~~~~~--~~l------------------------------- 119 (487)
T 3oja_A 98 -------------------------GPSIETLHAANNNISRVSC--SRG------------------------------- 119 (487)
T ss_dssp -------------------------CTTCCEEECCSSCCCCEEE--CCC-------------------------------
T ss_pred -------------------------CCCcCEEECcCCcCCCCCc--ccc-------------------------------
Confidence 2455666665554222111 011
Q ss_pred cccccCCCCcccccccceeecccccccccccCCCCCCCccEEEEcCCCCchhhhhhccc-CccceeeeecccccccCCcc
Q 038861 926 SLTSFSSENELPATLEQLEVRFCSNLAFLSRNGNLPQALKYLEVSYCSKLESLAERLDN-TSLEVIAISYLENLKSLPAG 1004 (1165)
Q Consensus 926 ~l~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~n~~~~~~p~~ 1004 (1165)
++|+.|++++|.+.+..|..+.. ++|+.|++++|.+.+..|..
T Consensus 120 ------------------------------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (487)
T 3oja_A 120 ------------------------------------QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (487)
T ss_dssp ------------------------------------SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGG
T ss_pred ------------------------------------CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHH
Confidence 34677777777666655554444 78888888888888877777
Q ss_pred cC-CCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCc
Q 038861 1005 LH-NLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNL 1082 (1165)
Q Consensus 1005 ~~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L 1082 (1165)
+. .+++|++|+|++|.+.+..+ ...+++|+.|+|++|.+.+..| .|..+++|+.|++++|.+.+ +|.. ..+++|
T Consensus 164 l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L 239 (487)
T 3oja_A 164 LAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNL 239 (487)
T ss_dssp GGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTC
T ss_pred HhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCC
Confidence 75 78999999999998776633 3357899999999998877544 48889999999999999854 5655 778899
Q ss_pred ceEEEecCCCCCcccccccccCCCCcEEEEe
Q 038861 1083 ESLEVHDLKISKPLFEWGLNKFSSLRELQIT 1113 (1165)
Q Consensus 1083 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 1113 (1165)
+.|++++|++.....+..+..+++|+.++++
T Consensus 240 ~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 9999999998722334447778888887775
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.74 E-value=1.9e-18 Score=188.68 Aligned_cols=251 Identities=15% Similarity=0.130 Sum_probs=117.4
Q ss_pred ccccEEEeccCCCCCCChHHHhhcCccccccccccceeecccccccCCch-hhhcCCCCCcceEEEeCCCCCccccc-c-
Q 038861 815 SQLRTFKIEHCNALESLPEAWMRNSNSSLQSLEIGTIEIEECNALESLPE-AWMQDSSTSLESLNIDGCDSLTYIAR-I- 891 (1165)
Q Consensus 815 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~l~~l~~-~~~~~~l~~L~~L~l~~~~~l~~~~~-~- 891 (1165)
++|++|++++|.+ .+|..+.. .++.|+++++.+........... ......+++|++|++++|......+. +
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~----~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTD----IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHH----HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred CCceeEeeccccc--ccHHHHHH----HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 4566666666665 45554432 26667777766654321111100 00011367888888888775544432 2
Q ss_pred -CCccccceEeeccCcCcccccCCcCccccCCCCccccccCCCCcccccccceeecccccccccccCCCCCCCccEEEEc
Q 038861 892 -QLPPSLRRLIISDCYNLRTLTGDQGICSSRSGRTSLTSFSSENELPATLEQLEVRFCSNLAFLSRNGNLPQALKYLEVS 970 (1165)
Q Consensus 892 -~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~ 970 (1165)
..+++|++|++++|. +..+ |..+..+. ...+++|++|+++
T Consensus 117 ~~~l~~L~~L~Ls~N~-l~~~-------------------------~~~~~~l~-------------~~~~~~L~~L~L~ 157 (312)
T 1wwl_A 117 EATGPDLNILNLRNVS-WATR-------------------------DAWLAELQ-------------QWLKPGLKVLSIA 157 (312)
T ss_dssp SCCSCCCSEEEEESCB-CSSS-------------------------SSHHHHHH-------------TTCCTTCCEEEEE
T ss_pred HhcCCCccEEEccCCC-Ccch-------------------------hHHHHHHH-------------HhhcCCCcEEEee
Confidence 556667777776663 1111 11111110 0012445556665
Q ss_pred CCCCchhhhhhccc-Cccceeeeeccccccc--CCccc--CCCCCCCEEEEeCCCCCc--ccc-CCCCCCCCcCeEEeec
Q 038861 971 YCSKLESLAERLDN-TSLEVIAISYLENLKS--LPAGL--HNLHHLQELKVYGCPNLE--SFP-EGGLPSTKLTKLTIGY 1042 (1165)
Q Consensus 971 ~~~~~~~~~~~~~~-~~L~~L~L~~n~~~~~--~p~~~--~~l~~L~~L~L~~n~~~~--~~~-~~~~~l~~L~~L~L~~ 1042 (1165)
+|.+.+..+..+.. ++|++|++++|++.+. .|..+ ..+++|++|++++|.+.+ .++ ..+..+++|++|++++
T Consensus 158 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~ 237 (312)
T 1wwl_A 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH 237 (312)
T ss_dssp SCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTT
T ss_pred CCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCC
Confidence 55544443333333 5555555555554433 12222 445555555555555432 111 1222344555555555
Q ss_pred CCCCCcCC-cccCCCCCCceeeeccCCCCcccCCCCCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecC
Q 038861 1043 CENLKALP-NCMHNLTSLLHLEIGWCRSLVSFPEDGFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGG 1115 (1165)
Q Consensus 1043 n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 1115 (1165)
|.+.+..| ..+..+++|++|++++|.+. .+|.... ++|+.|++++|++.+. +. +..+++|++|++++|
T Consensus 238 N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-~~L~~L~Ls~N~l~~~--p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 238 NSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-AKLSVLDLSYNRLDRN--PS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp SCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-SEEEEEECCSSCCCSC--CC-TTTSCEEEEEECTTC
T ss_pred CcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-CCceEEECCCCCCCCC--hh-HhhCCCCCEEeccCC
Confidence 55544432 23344555555555555552 3443311 4555555555555442 11 445555555555544
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=3.4e-17 Score=174.69 Aligned_cols=183 Identities=16% Similarity=0.106 Sum_probs=136.5
Q ss_pred cCCCCCCCccEEEEcCCCCchhhhhhccc-CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCC
Q 038861 956 RNGNLPQALKYLEVSYCSKLESLAERLDN-TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTK 1034 (1165)
Q Consensus 956 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 1034 (1165)
....+|++++.|++++|.+....+..+.. ++|++|++++|.+....+..|.++++|++|++++|.+.+..+..+..+++
T Consensus 31 ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 110 (270)
T 2o6q_A 31 IPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVN 110 (270)
T ss_dssp CCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSS
T ss_pred cCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccC
Confidence 34456678888888888766554444444 88888888888887665566778888888888888877766677788888
Q ss_pred cCeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceEEEecCCCCCcccccccccCCCCcEEEEe
Q 038861 1035 LTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQIT 1113 (1165)
Q Consensus 1035 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 1113 (1165)
|++|++++|.+....+..|.++++|++|++++|.+.+..+.. ..+++|+.|++++|++.+. ++..|.++++|++|+++
T Consensus 111 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV-PEGAFDKLTELKTLKLD 189 (270)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe-ChhHhccCCCcCEEECC
Confidence 888888888888777777888888888888888875433332 6778888888888888763 44447788888888888
Q ss_pred cCCCCcccCCCC--CCcccEEEecCCCC
Q 038861 1114 GGCPVLLSSPWF--PASLTVLHISYMPN 1139 (1165)
Q Consensus 1114 ~n~~~~~~~~~~--~~~L~~L~l~~~~~ 1139 (1165)
+|.+..+....+ .++|+.|++++||.
T Consensus 190 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 190 NNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 887665554333 46788888888763
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=1.1e-17 Score=174.99 Aligned_cols=197 Identities=16% Similarity=0.103 Sum_probs=160.0
Q ss_pred CCCCccEEEEcCCCCchhhhhhccc-Cccceeeeeccc-ccccCCcccCCCCCCCEEEEeC-CCCCccccCCCCCCCCcC
Q 038861 960 LPQALKYLEVSYCSKLESLAERLDN-TSLEVIAISYLE-NLKSLPAGLHNLHHLQELKVYG-CPNLESFPEGGLPSTKLT 1036 (1165)
Q Consensus 960 ~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~n~-~~~~~p~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~ 1036 (1165)
+|.+++.|++++|.+.+..+..+.. ++|++|++++|. +.+..+..|.++++|++|++++ |.+.+..+..+..+++|+
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 6778999999999876665555544 999999999997 6666666899999999999999 887777777888999999
Q ss_pred eEEeecCCCCCcCCcccCCCCCCc---eeeeccC-CCCcccCCC--CCCCCcc-eEEEecCCCCCcccccccccCCCCcE
Q 038861 1037 KLTIGYCENLKALPNCMHNLTSLL---HLEIGWC-RSLVSFPED--GFPTNLE-SLEVHDLKISKPLFEWGLNKFSSLRE 1109 (1165)
Q Consensus 1037 ~L~L~~n~~~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~p~~--~~~~~L~-~L~l~~n~~~~~~~~~~~~~l~~L~~ 1109 (1165)
+|++++|.+.+ +|. |..+++|+ .|++++| .+ ..+|.. ..+++|+ .|++++|++. .++...|.. ++|+.
T Consensus 109 ~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l-~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~ 183 (239)
T 2xwt_C 109 FLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYM-TSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDA 183 (239)
T ss_dssp EEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTC-CEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEE
T ss_pred EEeCCCCCCcc-ccc-cccccccccccEEECCCCcch-hhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCE
Confidence 99999999877 665 88899998 9999999 66 455543 7789999 9999999998 456655666 89999
Q ss_pred EEEecCC-CCcccCCCC--C-CcccEEEecCCCCcccHHHhhhcCCccceEeecCCCCC
Q 038861 1110 LQITGGC-PVLLSSPWF--P-ASLTVLHISYMPNLESLSLIVENLTSLEILILCKCPKL 1164 (1165)
Q Consensus 1110 L~l~~n~-~~~~~~~~~--~-~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l 1164 (1165)
|++++|. ...+....+ . ++|+.|++++| .++.+|.. .+++|+.|+++++..|
T Consensus 184 L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp EECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT--TCTTCSEEECTTC---
T ss_pred EEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh--HhccCceeeccCccCC
Confidence 9999984 776655443 3 78999999995 46677754 7899999999999865
No 78
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.72 E-value=7.7e-20 Score=221.42 Aligned_cols=153 Identities=14% Similarity=0.041 Sum_probs=94.3
Q ss_pred CCccEEEEcCCCCchhhhhhcc--cCccceeeeec-----ccccccCC------cccCCCCCCCEEEEeCCCCCccccCC
Q 038861 962 QALKYLEVSYCSKLESLAERLD--NTSLEVIAISY-----LENLKSLP------AGLHNLHHLQELKVYGCPNLESFPEG 1028 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~~~~~~~--~~~L~~L~L~~-----n~~~~~~p------~~~~~l~~L~~L~L~~n~~~~~~~~~ 1028 (1165)
++|+.|.++.+.........+. .++|+.|+++. |...+..| ..+.++++|++|++++ .+....+..
T Consensus 372 ~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~ 450 (594)
T 2p1m_B 372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEY 450 (594)
T ss_dssp TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHH
T ss_pred hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHH
Confidence 4577776666655544333332 37788888882 22222221 2255678899999877 444433333
Q ss_pred CCC-CCCcCeEEeecCCCCCcCCccc-CCCCCCceeeeccCCCCcccCC-C-CCCCCcceEEEecCCCCCcccccccccC
Q 038861 1029 GLP-STKLTKLTIGYCENLKALPNCM-HNLTSLLHLEIGWCRSLVSFPE-D-GFPTNLESLEVHDLKISKPLFEWGLNKF 1104 (1165)
Q Consensus 1029 ~~~-l~~L~~L~L~~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~p~-~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l 1104 (1165)
+.. +++|+.|+|++|.+....+..+ .++++|+.|++++|++...... . ..+++|+.|++++|+++..........+
T Consensus 451 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l 530 (594)
T 2p1m_B 451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKM 530 (594)
T ss_dssp HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHC
T ss_pred HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhC
Confidence 333 6789999999888755444334 6688899999999988332221 2 4578899999999988543323212457
Q ss_pred CCCcEEEEecC
Q 038861 1105 SSLRELQITGG 1115 (1165)
Q Consensus 1105 ~~L~~L~l~~n 1115 (1165)
++|+...+.++
T Consensus 531 p~l~i~~~~~~ 541 (594)
T 2p1m_B 531 PKLNVEVIDER 541 (594)
T ss_dssp TTEEEEEECSS
T ss_pred CCCEEEEecCC
Confidence 77776666543
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.72 E-value=8.9e-17 Score=171.43 Aligned_cols=196 Identities=15% Similarity=0.085 Sum_probs=139.4
Q ss_pred CccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeec
Q 038861 963 ALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGY 1042 (1165)
Q Consensus 963 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 1042 (1165)
..+.++++++.+. .+|..+. ++++.|++++|.+.+..+..|.++++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCC-ccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 3567777776543 3443322 6788888888887766666788888888888888877666666667778888888888
Q ss_pred CCCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCCCCccc
Q 038861 1043 CENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCPVLLS 1121 (1165)
Q Consensus 1043 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 1121 (1165)
|.+....+..|.++++|++|++++|.+.+..+.. ..+++|++|++++|++.+ +++..|..+++|+.|++++|.+..+.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc-cCHhHccCCcccceeEecCCcCcEeC
Confidence 8877766667778888888888888875544443 677888888888888775 34444777888888888887766655
Q ss_pred CCCC--CCcccEEEecCCCCcccHHH-hhhcCCccceEeecCCC
Q 038861 1122 SPWF--PASLTVLHISYMPNLESLSL-IVENLTSLEILILCKCP 1162 (1165)
Q Consensus 1122 ~~~~--~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~ 1162 (1165)
...+ .++|++|++++| .++.++. .+..+++|+.|++++||
T Consensus 174 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 4433 367888888886 3555544 36677888888888776
No 80
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.70 E-value=1.3e-18 Score=210.65 Aligned_cols=136 Identities=17% Similarity=0.254 Sum_probs=64.2
Q ss_pred ccCCcCceEecCCCCccccchhhc-CCCCcceEEEcCCCCccc--cCCCC-CcccccEEEeccCCCCCCChHHHhh--cC
Q 038861 766 SLVTEDDLELSNCKGLTKLPQALL-TLSSLRELRISGCASLVS--FPQAA-LPSQLRTFKIEHCNALESLPEAWMR--NS 839 (1165)
Q Consensus 766 ~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~l~~--~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~--~~ 839 (1165)
.+++|++|++++|.+....+..+. .+++|++|++++|..... ++... .+++|++|++++|.+....+..+.. ..
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 345666666666665544444443 466777777766643322 11111 3466677777666633322221111 12
Q ss_pred ccccccccccceeecccccccCCchhhhcCCCCCcceEEEeCCCCCcccc-ccCCccccceEeeccC
Q 038861 840 NSSLQSLEIGTIEIEECNALESLPEAWMQDSSTSLESLNIDGCDSLTYIA-RIQLPPSLRRLIISDC 905 (1165)
Q Consensus 840 ~~~L~~l~l~~~~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~ 905 (1165)
.++|+.|+++.+. .... ...+ ......+++|++|++++|...+.++ .+..+++|++|.+..+
T Consensus 183 ~~~L~~L~l~~~~-~~~~-~~~l--~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 183 YTSLVSLNISCLA-SEVS-FSAL--ERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp CCCCCEEECTTCC-SCCC-HHHH--HHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred CCcCcEEEecccC-CcCC-HHHH--HHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 2345555554433 0000 0000 0111225677777777774443332 2334566777765544
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.69 E-value=1.6e-16 Score=170.55 Aligned_cols=178 Identities=19% Similarity=0.099 Sum_probs=132.1
Q ss_pred CCCCCCccEEEEcCCCCchhhhhhccc-CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcC
Q 038861 958 GNLPQALKYLEVSYCSKLESLAERLDN-TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLT 1036 (1165)
Q Consensus 958 ~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 1036 (1165)
..+|++++.|++++|.+.+..+..+.. ++|++|++++|.+.+..+ ...+++|++|++++|.+. .+|..+..+++|+
T Consensus 27 ~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~ 103 (290)
T 1p9a_G 27 PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALT 103 (290)
T ss_dssp SCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCC
T ss_pred CCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCC
Confidence 445677888888888776665555555 888888888888765433 267888888888888754 5667777888888
Q ss_pred eEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecC
Q 038861 1037 KLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGG 1115 (1165)
Q Consensus 1037 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 1115 (1165)
+|++++|.+.+..+..|.++++|++|++++|++.+..+.. ..+++|+.|++++|++.+ +++..|.++++|+.|++++|
T Consensus 104 ~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 104 VLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQEN 182 (290)
T ss_dssp EEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC-CCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc-cCHHHhcCcCCCCEEECCCC
Confidence 8888888888777777888888888888888885443333 567888888888888875 45555778888888888888
Q ss_pred CCCcccCCCC-CCcccEEEecCCCC
Q 038861 1116 CPVLLSSPWF-PASLTVLHISYMPN 1139 (1165)
Q Consensus 1116 ~~~~~~~~~~-~~~L~~L~l~~~~~ 1139 (1165)
.+..++...+ ..+|+.|++++||.
T Consensus 183 ~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 183 SLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred cCCccChhhcccccCCeEEeCCCCc
Confidence 7765544332 34688888888764
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=6.5e-17 Score=172.61 Aligned_cols=181 Identities=12% Similarity=0.015 Sum_probs=113.1
Q ss_pred ccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecC
Q 038861 964 LKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYC 1043 (1165)
Q Consensus 964 L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 1043 (1165)
|++|++++|.+.+ ++.....++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 65 L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 143 (272)
T 3rfs_A 65 VRYLALGGNKLHD-ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143 (272)
T ss_dssp CCEEECTTSCCCC-CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEECCCCCCCC-chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC
Confidence 4444444443322 222222366666666666666666666777777777777777766666666777777777777777
Q ss_pred CCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCCCCcccC
Q 038861 1044 ENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCPVLLSS 1122 (1165)
Q Consensus 1044 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 1122 (1165)
.+.+..+..|..+++|+.|++++|++.+..+.. ..+++|+.|++++|++.+. ++..+..+++|+.|++++|...
T Consensus 144 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~---- 218 (272)
T 3rfs_A 144 QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNPWD---- 218 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBC----
T ss_pred ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc-CHHHHhCCcCCCEEEccCCCcc----
Confidence 777666666677777777777777775444433 5677777777777777753 3344677777777777776322
Q ss_pred CCCCCcccEEEecCCCCcccHHHhhhcCC
Q 038861 1123 PWFPASLTVLHISYMPNLESLSLIVENLT 1151 (1165)
Q Consensus 1123 ~~~~~~L~~L~l~~~~~l~~l~~~~~~l~ 1151 (1165)
.-.++|+.|+++.|...+.+|..++.++
T Consensus 219 -~~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 219 -CTCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp -CCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred -ccCcHHHHHHHHHHhCCCcccCcccccC
Confidence 1134566666666555555554444433
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.68 E-value=5.9e-17 Score=176.85 Aligned_cols=197 Identities=16% Similarity=0.088 Sum_probs=157.6
Q ss_pred CCccEEEEcCCCCchhhhhhc--c-cCccceeeeecccccccCC----cccCCCCCCCEEEEeCCCCCccccCCCCCCCC
Q 038861 962 QALKYLEVSYCSKLESLAERL--D-NTSLEVIAISYLENLKSLP----AGLHNLHHLQELKVYGCPNLESFPEGGLPSTK 1034 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~~~~~~--~-~~~L~~L~L~~n~~~~~~p----~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 1034 (1165)
++|++|++++|.+.+..|..+ . .++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 459999999998888887765 3 3999999999999987655 34567899999999999998888889999999
Q ss_pred cCeEEeecCCCCCc--C--CcccCCCCCCceeeeccCCCCcccCCC-----CCCCCcceEEEecCCCCCcccccccccC-
Q 038861 1035 LTKLTIGYCENLKA--L--PNCMHNLTSLLHLEIGWCRSLVSFPED-----GFPTNLESLEVHDLKISKPLFEWGLNKF- 1104 (1165)
Q Consensus 1035 L~~L~L~~n~~~~~--~--~~~~~~l~~L~~L~l~~n~~~~~~p~~-----~~~~~L~~L~l~~n~~~~~~~~~~~~~l- 1104 (1165)
|++|++++|.+.+. + +..+..+++|++|++++|.+. .++.. ..+++|++|++++|++.+..|+. +..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~ 248 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-APRCM 248 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CSSCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HHhcc
Confidence 99999999987652 1 233478999999999999984 33331 46799999999999998765543 5554
Q ss_pred --CCCcEEEEecCCCCcccCCCCCCcccEEEecCCCCcccHHHhhhcCCccceEeecCCCC
Q 038861 1105 --SSLRELQITGGCPVLLSSPWFPASLTVLHISYMPNLESLSLIVENLTSLEILILCKCPK 1163 (1165)
Q Consensus 1105 --~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 1163 (1165)
++|++|++++|.+..++. .++++|+.|++++|. +..+|. +..+++|+.|++++|+-
T Consensus 249 ~~~~L~~L~Ls~N~l~~lp~-~~~~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 249 WSSALNSLNLSFAGLEQVPK-GLPAKLRVLDLSSNR-LNRAPQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CCTTCCCEECCSSCCCSCCS-CCCSCCSCEECCSCC-CCSCCC-TTSCCCCSCEECSSTTT
T ss_pred CcCcCCEEECCCCCCCchhh-hhcCCCCEEECCCCc-CCCCch-hhhCCCccEEECcCCCC
Confidence 799999999998886544 345899999999965 566654 57889999999999963
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=2.4e-16 Score=164.84 Aligned_cols=173 Identities=17% Similarity=0.045 Sum_probs=123.0
Q ss_pred CCccEEEEcCCCCchhhh-hhccc-Cccceeeeec-ccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcC--
Q 038861 962 QALKYLEVSYCSKLESLA-ERLDN-TSLEVIAISY-LENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLT-- 1036 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~~~-~~~~~-~~L~~L~L~~-n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~-- 1036 (1165)
++|++|++++|..++.++ ..+.. ++|++|++++ |.+.+..+..|.++++|++|++++|.+.+ +|. +..+++|+
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L 132 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIF 132 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSE
T ss_pred CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccc
Confidence 346666776665233333 23333 7788888887 77766666778888888888888888665 554 77777777
Q ss_pred -eEEeecC-CCCCcCCcccCCCCCCc-eeeeccCCCCcccCCC-CCCCCcceEEEecCC-CCCcccccccccC-CCCcEE
Q 038861 1037 -KLTIGYC-ENLKALPNCMHNLTSLL-HLEIGWCRSLVSFPED-GFPTNLESLEVHDLK-ISKPLFEWGLNKF-SSLREL 1110 (1165)
Q Consensus 1037 -~L~L~~n-~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~n~-~~~~~~~~~~~~l-~~L~~L 1110 (1165)
+|++++| .+....+..|.++++|+ .|++++|.+. .+|.. ...++|+.|++++|+ +.+ +++..|.++ ++|+.|
T Consensus 133 ~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~-i~~~~~~~l~~~L~~L 210 (239)
T 2xwt_C 133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTV-IDKDAFGGVYSGPSLL 210 (239)
T ss_dssp EEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCE-ECTTTTTTCSBCCSEE
T ss_pred cEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCccc-CCHHHhhccccCCcEE
Confidence 8888888 76666666788888888 8888888884 55554 333788888888885 653 455557888 888888
Q ss_pred EEecCCCCcccCCCCCCcccEEEecCCCC
Q 038861 1111 QITGGCPVLLSSPWFPASLTVLHISYMPN 1139 (1165)
Q Consensus 1111 ~l~~n~~~~~~~~~~~~~L~~L~l~~~~~ 1139 (1165)
++++|....++.. .+++|+.|+++++..
T Consensus 211 ~l~~N~l~~l~~~-~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 211 DVSQTSVTALPSK-GLEHLKELIARNTWT 238 (239)
T ss_dssp ECTTCCCCCCCCT-TCTTCSEEECTTC--
T ss_pred ECCCCccccCChh-HhccCceeeccCccC
Confidence 8888877665544 456888888887654
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=7.3e-16 Score=165.44 Aligned_cols=108 Identities=20% Similarity=0.110 Sum_probs=84.3
Q ss_pred CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeee
Q 038861 985 TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEI 1064 (1165)
Q Consensus 985 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 1064 (1165)
++|++|++++|.+.+..|..|.++++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..|.++++|+.|++
T Consensus 100 ~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 179 (290)
T 1p9a_G 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179 (290)
T ss_dssp TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEEC
Confidence 66777777777776666677888888888888888877776667778888888888888887766666788888888888
Q ss_pred ccCCCCcccCCC-CCCCCcceEEEecCCCC
Q 038861 1065 GWCRSLVSFPED-GFPTNLESLEVHDLKIS 1093 (1165)
Q Consensus 1065 ~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~ 1093 (1165)
++|++. .+|.. ....+|+.|++++|++.
T Consensus 180 ~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 180 QENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 888884 55655 66678888888888875
No 86
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.67 E-value=2.7e-16 Score=168.75 Aligned_cols=201 Identities=14% Similarity=0.072 Sum_probs=138.1
Q ss_pred CCcceEEEeCCCCCcccc-ccCCccccceEeeccCcCcccccCCcCccccCCCCccccccCCCCcccccccceeeccccc
Q 038861 872 TSLESLNIDGCDSLTYIA-RIQLPPSLRRLIISDCYNLRTLTGDQGICSSRSGRTSLTSFSSENELPATLEQLEVRFCSN 950 (1165)
Q Consensus 872 ~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~ 950 (1165)
++|++|++++|......+ .+..+++|++|++++|. +..+... .+..
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~------------------------~~~~-------- 74 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDG------------------------AYQS-------- 74 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTT------------------------TTTT--------
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHH------------------------HccC--------
Confidence 467888888776544333 45667777787777763 2221110 1111
Q ss_pred ccccccCCCCCCCccEEEEcCCCCchhhhhhccc-CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCcc-ccCC
Q 038861 951 LAFLSRNGNLPQALKYLEVSYCSKLESLAERLDN-TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLES-FPEG 1028 (1165)
Q Consensus 951 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~-~~~~ 1028 (1165)
.++|++|++++|.+.+..+..+.. ++|++|++++|.+.+..+..+.++++|++|++++|.+.+. +|..
T Consensus 75 ----------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~ 144 (276)
T 2z62_A 75 ----------LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144 (276)
T ss_dssp ----------CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred ----------CcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh
Confidence 145788888888766555554444 7888888888888776666788888888888888887663 5777
Q ss_pred CCCCCCcCeEEeecCCCCCcCCcccCCCCCCc----eeeeccCCCCcccCCCCCCCCcceEEEecCCCCCcccccccccC
Q 038861 1029 GLPSTKLTKLTIGYCENLKALPNCMHNLTSLL----HLEIGWCRSLVSFPEDGFPTNLESLEVHDLKISKPLFEWGLNKF 1104 (1165)
Q Consensus 1029 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~----~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l 1104 (1165)
+..+++|+.|++++|.+.+..+..|..+++|+ .|++++|++.+..+......+|+.|++++|++.+ +++..|.++
T Consensus 145 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l 223 (276)
T 2z62_A 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS-VPDGIFDRL 223 (276)
T ss_dssp GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSC-CCTTTTTTC
T ss_pred hccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceee-cCHhHhccc
Confidence 78888888888888888776666676666666 7888888885444444445578888888888775 344557778
Q ss_pred CCCcEEEEecCC
Q 038861 1105 SSLRELQITGGC 1116 (1165)
Q Consensus 1105 ~~L~~L~l~~n~ 1116 (1165)
++|+.|++++|.
T Consensus 224 ~~L~~L~l~~N~ 235 (276)
T 2z62_A 224 TSLQKIWLHTNP 235 (276)
T ss_dssp CSCCEEECCSSC
T ss_pred ccccEEEccCCc
Confidence 888888888763
No 87
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.66 E-value=1.7e-15 Score=169.46 Aligned_cols=286 Identities=14% Similarity=0.138 Sum_probs=175.6
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCC------CHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDF------DVFRVTK 74 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~------~~~~~~~ 74 (1165)
|||+++++++.+++... +++.|+|++|+|||||++++++. . ..+|+.+.... +...+..
T Consensus 15 ~gR~~el~~L~~~l~~~--------~~v~i~G~~G~GKT~Ll~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 15 FDREEESRKLEESLENY--------PLTLLLGIRRVGKSSLLRAFLNE--R-----PGILIDCRELYAERGHITREELIK 79 (350)
T ss_dssp CSCHHHHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHH--S-----SEEEEEHHHHHHTTTCBCHHHHHH
T ss_pred CChHHHHHHHHHHHhcC--------CeEEEECCCcCCHHHHHHHHHHH--c-----CcEEEEeecccccccCCCHHHHHH
Confidence 79999999999998642 48999999999999999999853 2 16677765432 5566666
Q ss_pred HHHHhccCC----------------CC--CCCCHHHHHHHHHHHhcC-ceEEEEEeCCCCCCc------cc-hhhhhccc
Q 038861 75 SILMSISNV----------------TV--NDNDLNSLQEKLEKELIK-KKFLLVLDDMWNENY------ND-WELLNRPF 128 (1165)
Q Consensus 75 ~i~~~l~~~----------------~~--~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~~~~~------~~-~~~l~~~~ 128 (1165)
.+...+... .. ......+....+.+..+. ++++||+||++.... .+ +..+....
T Consensus 80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~ 159 (350)
T 2qen_A 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY 159 (350)
T ss_dssp HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH
Confidence 666554320 00 123455566666655543 389999999966432 12 22232221
Q ss_pred CCCCCCcEEEEecCchHHHHhh-----------cc-cceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHH
Q 038861 129 KAGTSGSKIIVTTRNRVVAERV-----------GS-VREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMK 196 (1165)
Q Consensus 129 ~~~~~~~~iiiTtR~~~~~~~~-----------~~-~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~ 196 (1165)
...++.++|+|++...+.... +. ...+++.+|+.+|+.+++......... .. ..+.+.+|++.
T Consensus 160 -~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~-~~---~~~~~~~i~~~ 234 (350)
T 2qen_A 160 -DSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL-DV---PENEIEEAVEL 234 (350)
T ss_dssp -HHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC-CC---CHHHHHHHHHH
T ss_pred -HhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHH
Confidence 112578899998876532211 11 247899999999999999864321111 11 13678899999
Q ss_pred cCCCchHHHHHHhhhcCCCChhHHHH-HHhccccccCCCCCChhHHHHhccccC---cHHHHhHhhhhcCCCCCCccChH
Q 038861 197 CKGLPLAAKTLGGLLRGKHDPKDWEI-VLNADVWDFADDGCDIIPALKVSYRFL---PPQLKQCFAYCSLFPKDYEFEEE 272 (1165)
Q Consensus 197 ~~g~Plal~~~~~~l~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~l~~sy~~L---~~~~k~~fl~la~f~~~~~i~~~ 272 (1165)
|+|+|+++..++..+....+...+.. ..+. +...+.-.+..+ ++..+.++..+|+ . .....
T Consensus 235 tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~l~~~~~~~~~~l~~la~--g--~~~~~ 299 (350)
T 2qen_A 235 LDGIPGWLVVFGVEYLRNGDFGRAMKRTLEV-----------AKGLIMGELEELRRRSPRYVDILRAIAL--G--YNRWS 299 (350)
T ss_dssp HTTCHHHHHHHHHHHHHHCCHHHHHHHHHHH-----------HHHHHHHHHHHHHHHCHHHHHHHHHHHT--T--CCSHH
T ss_pred hCCCHHHHHHHHHHHhccccHhHHHHHHHHH-----------HHHHHHHHHHHHHhCChhHHHHHHHHHh--C--CCCHH
Confidence 99999999998876532212222211 1110 111111122233 7889999999998 2 23444
Q ss_pred HHHHHHHHcCCcccccCcccHHHHHHHHHHHHHHcCccccccCCCCeEE-EehHHHHHHH
Q 038861 273 EIILLWTAEGFLDQECDGRKMEELGREFVRELHSRSLFHQSSKDASRFV-MHSLINDLAR 331 (1165)
Q Consensus 273 ~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~li~~~~~~~~~~~-~H~li~~~~~ 331 (1165)
.+........ + .........+++.|++.++|...+ +.|. .|++++.+.+
T Consensus 300 ~l~~~~~~~~------~-~~~~~~~~~~l~~L~~~gli~~~~---~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 300 LIRDYLAVKG------T-KIPEPRLYALLENLKKMNWIVEED---NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHTT------C-CCCHHHHHHHHHHHHHTTSEEEET---TEEEESSHHHHHHHT
T ss_pred HHHHHHHHHh------C-CCCHHHHHHHHHHHHhCCCEEecC---CEEEEecHHHHHHHc
Confidence 5544332211 0 011244678899999999998642 3566 4788888765
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.66 E-value=7.3e-16 Score=162.29 Aligned_cols=159 Identities=14% Similarity=0.083 Sum_probs=122.8
Q ss_pred CCCCCCccEEEEcCCCCchhhhhhccc-CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcC
Q 038861 958 GNLPQALKYLEVSYCSKLESLAERLDN-TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLT 1036 (1165)
Q Consensus 958 ~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 1036 (1165)
..+|++++.|++++|.+.+..+..+.. ++|++|++++|.+.+..+..+.++++|++|+|++|.+.+..+..+..+++|+
T Consensus 31 ~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 110 (251)
T 3m19_A 31 SGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLD 110 (251)
T ss_dssp SCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCC
Confidence 445677888888888776666655554 8888888888888877777788888888888888887777777778888888
Q ss_pred eEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecC
Q 038861 1037 KLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGG 1115 (1165)
Q Consensus 1037 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 1115 (1165)
+|++++|.+....+..|.++++|+.|++++|.+.+..+.. ..+++|+.|++++|++.+. ++..|..+++|+.|++++|
T Consensus 111 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 111 KLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV-PHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc-CHHHHhCCCCCCEEEeeCC
Confidence 8888888887766667788888888888888885444433 6778888888888888754 4445778888888888887
Q ss_pred CC
Q 038861 1116 CP 1117 (1165)
Q Consensus 1116 ~~ 1117 (1165)
..
T Consensus 190 ~~ 191 (251)
T 3m19_A 190 QF 191 (251)
T ss_dssp CB
T ss_pred ce
Confidence 44
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.66 E-value=4.8e-16 Score=165.85 Aligned_cols=175 Identities=14% Similarity=0.020 Sum_probs=147.0
Q ss_pred CCccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEee
Q 038861 962 QALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIG 1041 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 1041 (1165)
++|+.|++++|.+ ..++.....++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 41 ~~L~~L~l~~~~i-~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 41 NSIDQIIANNSDI-KSVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp TTCCEEECTTSCC-CCCTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred cceeeeeeCCCCc-ccccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 5699999999864 4455555559999999999998763 478999999999999999888888788999999999999
Q ss_pred cCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCCCCcc
Q 038861 1042 YCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCPVLL 1120 (1165)
Q Consensus 1042 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 1120 (1165)
+|.+.+..+..|.++++|++|++++|.+.+..+.. ..+++|+.|++++|++.+. ++..+..+++|+.|++++|....+
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL-PEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc-CHHHhcCCccCCEEECCCCcCCcc
Confidence 99999888888999999999999999996555544 7899999999999999864 445588999999999999987766
Q ss_pred cCCC--CCCcccEEEecCCCCc
Q 038861 1121 SSPW--FPASLTVLHISYMPNL 1140 (1165)
Q Consensus 1121 ~~~~--~~~~L~~L~l~~~~~l 1140 (1165)
.... -.++|+.|++++|+..
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 197 PDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCBC
T ss_pred CHHHHhCCcCCCEEEccCCCcc
Confidence 5543 3578999999997643
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.65 E-value=1.4e-15 Score=160.18 Aligned_cols=176 Identities=14% Similarity=-0.006 Sum_probs=148.4
Q ss_pred CccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeec
Q 038861 963 ALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGY 1042 (1165)
Q Consensus 963 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 1042 (1165)
+.+.++++++.. ..+|..+. ++++.|++++|.+.+..+..+.++++|++|+|++|.+.+..+..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l-~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSL-DSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCC-SSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCc-cccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 467888888754 44554333 7899999999999998888999999999999999999988888899999999999999
Q ss_pred CCCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCCCCccc
Q 038861 1043 CENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCPVLLS 1121 (1165)
Q Consensus 1043 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 1121 (1165)
|.+....+..|.++++|++|++++|.+.+..+.. ..+++|+.|++++|++.+. ++..|..+++|+.|++++|....+.
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI-PAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc-CHHHcCcCcCCCEEECCCCcCCccC
Confidence 9999888888999999999999999996544444 6799999999999999864 4445899999999999999887666
Q ss_pred CCCC--CCcccEEEecCCCCcc
Q 038861 1122 SPWF--PASLTVLHISYMPNLE 1141 (1165)
Q Consensus 1122 ~~~~--~~~L~~L~l~~~~~l~ 1141 (1165)
...+ .++|+.|++++|+.-.
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCT
T ss_pred HHHHhCCCCCCEEEeeCCceeC
Confidence 5433 4689999999987543
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.63 E-value=1.1e-15 Score=166.00 Aligned_cols=188 Identities=16% Similarity=0.120 Sum_probs=118.1
Q ss_pred CCccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEee
Q 038861 962 QALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIG 1041 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 1041 (1165)
++|+.|++++|.+. .++.....++|++|++++|.+.+..+ +..+++|++|++++|.+.+. + .+..+++|+.|+++
T Consensus 41 ~~L~~L~l~~~~i~-~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 41 DGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HTCCEEECTTSCCC-CCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECT
T ss_pred CCcCEEEeeCCCcc-CchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECC
Confidence 35777777776443 34433334777777777776654433 67777777777777775543 2 46667777777777
Q ss_pred cCCCCCcCCcccCCCCCCceeeeccCCCCcccCCCCCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCCCCccc
Q 038861 1042 YCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPEDGFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCPVLLS 1121 (1165)
Q Consensus 1042 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 1121 (1165)
+|.+... +. +..+++|+.|++++|.+.+ ++....+++|+.|++++|++.+.. + +..+++|+.|++++|.+..+.
T Consensus 116 ~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~-~--l~~l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 116 STQITDV-TP-LAGLSNLQVLYLDLNQITN-ISPLAGLTNLQYLSIGNAQVSDLT-P--LANLSKLTTLKADDNKISDIS 189 (308)
T ss_dssp TSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECCSSCCCCCG-G--GTTCTTCCEEECCSSCCCCCG
T ss_pred CCCCCCc-hh-hcCCCCCCEEECCCCccCc-CccccCCCCccEEEccCCcCCCCh-h--hcCCCCCCEEECCCCccCcCh
Confidence 7776553 32 6777777777777777633 333456677777777777776522 2 667777777777776665544
Q ss_pred CCCCCCcccEEEecCCCCcccHHHhhhcCCccceEeecCCC
Q 038861 1122 SPWFPASLTVLHISYMPNLESLSLIVENLTSLEILILCKCP 1162 (1165)
Q Consensus 1122 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 1162 (1165)
...-.++|++|++++|. +..++ .+..+++|++|++++|+
T Consensus 190 ~l~~l~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 190 PLASLPNLIEVHLKNNQ-ISDVS-PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp GGGGCTTCCEEECTTSC-CCBCG-GGTTCTTCCEEEEEEEE
T ss_pred hhcCCCCCCEEEccCCc-cCccc-cccCCCCCCEEEccCCe
Confidence 33334577777777754 44444 25667777777777663
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.63 E-value=5.4e-16 Score=169.24 Aligned_cols=173 Identities=13% Similarity=0.042 Sum_probs=116.1
Q ss_pred CCccEEEEcCCCCchhhh----h-hcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCcc--c--cCCCCCC
Q 038861 962 QALKYLEVSYCSKLESLA----E-RLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLES--F--PEGGLPS 1032 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~~~----~-~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~--~--~~~~~~l 1032 (1165)
++|++|++++|.+.+..+ . ....++|++|++++|.+.+..|..+.++++|++|+|++|++.+. + +..+..+
T Consensus 117 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 196 (310)
T 4glp_A 117 LALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKF 196 (310)
T ss_dssp BCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSS
T ss_pred CCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcC
Confidence 346666666666554322 1 12237788888888888777777788888888888888876542 2 2234667
Q ss_pred CCcCeEEeecCCCCCcCCc----ccCCCCCCceeeeccCCCCcccCCC-CC---CCCcceEEEecCCCCCcccccccccC
Q 038861 1033 TKLTKLTIGYCENLKALPN----CMHNLTSLLHLEIGWCRSLVSFPED-GF---PTNLESLEVHDLKISKPLFEWGLNKF 1104 (1165)
Q Consensus 1033 ~~L~~L~L~~n~~~~~~~~----~~~~l~~L~~L~l~~n~~~~~~p~~-~~---~~~L~~L~l~~n~~~~~~~~~~~~~l 1104 (1165)
++|++|++++|.+.. ++. .+.++++|++|++++|++.+..|.. .. +++|++|++++|++.. ++.. + .
T Consensus 197 ~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~-~--~ 271 (310)
T 4glp_A 197 PAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKG-L--P 271 (310)
T ss_dssp CCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCSC-C--C
T ss_pred CCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hhhh-h--c
Confidence 788888888887743 222 2467788888888888886665543 33 3688888888888873 4443 3 2
Q ss_pred CCCcEEEEecCCCCcccCCCCCCcccEEEecCCCC
Q 038861 1105 SSLRELQITGGCPVLLSSPWFPASLTVLHISYMPN 1139 (1165)
Q Consensus 1105 ~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~ 1139 (1165)
++|+.|++++|.+..++.....++|+.|++++|+.
T Consensus 272 ~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 272 AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp SCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTT
T ss_pred CCCCEEECCCCcCCCCchhhhCCCccEEECcCCCC
Confidence 78888888888776654444457788888888763
No 93
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.61 E-value=3.6e-15 Score=170.86 Aligned_cols=309 Identities=12% Similarity=0.026 Sum_probs=180.2
Q ss_pred CCchHHHHHHHHHH-hcCCCCCCCCcEEEEE--EccCCchHHHHHHHHhCCcchhc---cCC-ceEEEEEcCCCCHHHHH
Q 038861 1 YGRKKDKDEIVELL-LRDDSRADDGFSVISI--IGMGGVGKTTLAQLVYKDDRVRR---HFE-IKAWTFVSEDFDVFRVT 73 (1165)
Q Consensus 1 vGR~~~~~~l~~~l-~~~~~~~~~~~~~v~i--~G~~GiGKTtLa~~~~~~~~~~~---~f~-~~~w~~~~~~~~~~~~~ 73 (1165)
+||+++++++.+++ ...........+.+.| +|++|+||||||+++++...... .+. .++|+.+....+...++
T Consensus 25 ~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (412)
T 1w5s_A 25 RVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTIL 104 (412)
T ss_dssp SSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHH
T ss_pred CChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHH
Confidence 69999999999998 5321100013456777 99999999999999986422110 122 35677776777888999
Q ss_pred HHHHHhccCCCC-CCCCHHHHHHHHHHHhc--CceEEEEEeCCCCCC------ccchhhhhcccCCC---C--CCcEEEE
Q 038861 74 KSILMSISNVTV-NDNDLNSLQEKLEKELI--KKKFLLVLDDMWNEN------YNDWELLNRPFKAG---T--SGSKIIV 139 (1165)
Q Consensus 74 ~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~------~~~~~~l~~~~~~~---~--~~~~iii 139 (1165)
..++.+++.... ...+..+....+.+.+. +++++||+||+|... ...+..+...+... + .+..||+
T Consensus 105 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~ 184 (412)
T 1w5s_A 105 SLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLL 184 (412)
T ss_dssp HHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEE
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEE
Confidence 999988865432 22345566666666664 679999999996632 12233232222211 2 4456888
Q ss_pred ecCchHHHHhhc---------ccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcC------CCchHH
Q 038861 140 TTRNRVVAERVG---------SVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCK------GLPLAA 204 (1165)
Q Consensus 140 TtR~~~~~~~~~---------~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~------g~Plal 204 (1165)
||+...+...+. ....+++++++.++++++|...+..... +..-..+.+..|++.++ |.|..+
T Consensus 185 ~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~G~p~~~ 262 (412)
T 1w5s_A 185 VASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLR--DTVWEPRHLELISDVYGEDKGGDGSARRA 262 (412)
T ss_dssp EEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBC--TTSCCHHHHHHHHHHHCGGGTSCCCHHHH
T ss_pred EeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCC--CCCCChHHHHHHHHHHHHhccCCCcHHHH
Confidence 887654332111 1123999999999999999765321100 01112367888999999 999765
Q ss_pred HHHHhhhc------CC--CChhHHHHHHhccccccCCCCCChhHHHHhccccCcHHHHhHhhhhcCCC--CCCccChHHH
Q 038861 205 KTLGGLLR------GK--HDPKDWEIVLNADVWDFADDGCDIIPALKVSYRFLPPQLKQCFAYCSLFP--KDYEFEEEEI 274 (1165)
Q Consensus 205 ~~~~~~l~------~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~la~f~--~~~~i~~~~l 274 (1165)
..+..... .. -+...+......... ...+.-+++.||+..+.++..+|.+. .+..+....+
T Consensus 263 ~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~ 333 (412)
T 1w5s_A 263 IVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLL 333 (412)
T ss_dssp HHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHH
Confidence 55433211 11 112233333222100 22345567889999999999998753 2334555555
Q ss_pred HHHHH--H---cCCcccccCcccHHHHHHHHHHHHHHcCcccccc---CCCCeEEEehHH
Q 038861 275 ILLWT--A---EGFLDQECDGRKMEELGREFVRELHSRSLFHQSS---KDASRFVMHSLI 326 (1165)
Q Consensus 275 ~~~w~--~---~~~~~~~~~~~~~~~~~~~~l~~L~~~~li~~~~---~~~~~~~~H~li 326 (1165)
...+. + .|. . .........+++.|++.++|.... +..++|.+|.+.
T Consensus 334 ~~~~~~~~~~~~~~-~-----~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 334 RQRYEDASLTMYNV-K-----PRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp HHHHHHHHHHHSCC-C-----CCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred HHHHHHHHHhhcCC-C-----CCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 44332 1 121 0 111344667899999999997643 234456666544
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.59 E-value=5.2e-15 Score=160.69 Aligned_cols=144 Identities=19% Similarity=0.105 Sum_probs=83.2
Q ss_pred CccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeec
Q 038861 963 ALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGY 1042 (1165)
Q Consensus 963 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 1042 (1165)
+|++|++++|.+. .++.....++|++|++++|.+.+. + .+..+++|++|++++|.+.+..+ +..+++|+.|++++
T Consensus 86 ~L~~L~L~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~ 160 (308)
T 1h6u_A 86 KITELELSGNPLK-NVSAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGN 160 (308)
T ss_dssp SCCEEECCSCCCS-CCGGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCS
T ss_pred CCCEEEccCCcCC-CchhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccC
Confidence 4666666666433 233333336666666666665442 2 26666666666666666554433 55566666666666
Q ss_pred CCCCCcCCcccCCCCCCceeeeccCCCCcccCCCCCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCCC
Q 038861 1043 CENLKALPNCMHNLTSLLHLEIGWCRSLVSFPEDGFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCP 1117 (1165)
Q Consensus 1043 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 1117 (1165)
|.+....+ +..+++|+.|++++|.+.+ ++....+++|+.|++++|++.+.. .+..+++|+.|++++|..
T Consensus 161 n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 161 AQVSDLTP--LANLSKLTTLKADDNKISD-ISPLASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp SCCCCCGG--GTTCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEEEEEEEEE
T ss_pred CcCCCChh--hcCCCCCCEEECCCCccCc-ChhhcCCCCCCEEEccCCccCccc---cccCCCCCCEEEccCCee
Confidence 66554322 6666666666666666633 333445666666666666666532 156666666666666543
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.59 E-value=1.7e-14 Score=160.21 Aligned_cols=196 Identities=20% Similarity=0.083 Sum_probs=142.0
Q ss_pred CCccEEEEcCCCCchhhhhh-ccc-Cccc-eeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeE
Q 038861 962 QALKYLEVSYCSKLESLAER-LDN-TSLE-VIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKL 1038 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~~~~~-~~~-~~L~-~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 1038 (1165)
++|++|++++|.+.+.++.. +.. +++. .+.+++|++.+..|..|.++++|++|++++|.+....+..+....++..|
T Consensus 54 ~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l 133 (350)
T 4ay9_X 54 GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL 133 (350)
T ss_dssp TTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEE
T ss_pred CCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhh
Confidence 34666777766655555432 222 4444 45666677777777888888999999999988777766677777788888
Q ss_pred EeecCCCCCcC-CcccCCCC-CCceeeeccCCCCcccCCC-CCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecC
Q 038861 1039 TIGYCENLKAL-PNCMHNLT-SLLHLEIGWCRSLVSFPED-GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGG 1115 (1165)
Q Consensus 1039 ~L~~n~~~~~~-~~~~~~l~-~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 1115 (1165)
++.++.....+ +..|..+. .++.|++++|.+. .+|.. ....+|+.|++++|...+.+++..|.++++|++|++++|
T Consensus 134 ~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N 212 (350)
T 4ay9_X 134 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT 212 (350)
T ss_dssp EEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS
T ss_pred hhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC
Confidence 88775544444 44566664 6888899988884 45544 556788888888765556677777888899999999988
Q ss_pred CCCcccCCCCCCcccEEEecCCCCcccHHHhhhcCCccceEeecC
Q 038861 1116 CPVLLSSPWFPASLTVLHISYMPNLESLSLIVENLTSLEILILCK 1160 (1165)
Q Consensus 1116 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~ 1160 (1165)
.+..++.. .+.+|+.|.+.++++++.+| .+.++++|+.+++.+
T Consensus 213 ~l~~lp~~-~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 213 RIHSLPSY-GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp CCCCCCSS-SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred CcCccChh-hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 77766543 35688888888888888888 467888888888764
No 96
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.59 E-value=2e-14 Score=161.32 Aligned_cols=286 Identities=12% Similarity=0.075 Sum_probs=168.6
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCC-----CCHHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSED-----FDVFRVTKS 75 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~-----~~~~~~~~~ 75 (1165)
|||+++++.|.+ +.. +++.|+|++|+|||||++++++. ... ..+|+.+... .+.......
T Consensus 16 ~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 16 FDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKDFLLE 80 (357)
T ss_dssp CCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHHHHHH
T ss_pred cChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHHHHHHH
Confidence 799999999999 732 48999999999999999999853 221 3578877643 344444444
Q ss_pred HHHhccC--------------------CCC---------CCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCc---cchhh
Q 038861 76 ILMSISN--------------------VTV---------NDNDLNSLQEKLEKELIKKKFLLVLDDMWNENY---NDWEL 123 (1165)
Q Consensus 76 i~~~l~~--------------------~~~---------~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~---~~~~~ 123 (1165)
+...+.. ... .......+...+.+..+ ++++||+||+++... .++..
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~ 159 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLP 159 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHH
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHH
Confidence 4433210 000 01234444444444322 499999999966321 22222
Q ss_pred hhcccCCCCCCcEEEEecCchHHHHhh----------c-c-cceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHH
Q 038861 124 LNRPFKAGTSGSKIIVTTRNRVVAERV----------G-S-VREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVRE 191 (1165)
Q Consensus 124 l~~~~~~~~~~~~iiiTtR~~~~~~~~----------~-~-~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~ 191 (1165)
+...+....++.++|+|+|........ . . ...+++.+|+.+|+.+++......... ...+ ..
T Consensus 160 ~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~~-----~~ 233 (357)
T 2fna_A 160 ALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI-DFKD-----YE 233 (357)
T ss_dssp HHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC-CCCC-----HH
T ss_pred HHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC-CCCc-----HH
Confidence 222222222478899999986532211 1 1 257899999999999999875311111 1111 27
Q ss_pred HHHHHcCCCchHHHHHHhhhcCCCChhHHHHH-HhccccccCCCCCChhHHHH-hccc--cCcHHHHhHhhhhcCCCCCC
Q 038861 192 KIAMKCKGLPLAAKTLGGLLRGKHDPKDWEIV-LNADVWDFADDGCDIIPALK-VSYR--FLPPQLKQCFAYCSLFPKDY 267 (1165)
Q Consensus 192 ~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~l~-~sy~--~L~~~~k~~fl~la~f~~~~ 267 (1165)
.|++.|+|+|+++..++..+........|... .+... ..+...+. +.++ .+++..+.++..+|+ +.
T Consensus 234 ~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~l~~~~~~~l~~la~---g~ 303 (357)
T 2fna_A 234 VVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK-------KLILKEFENFLHGREIARKRYLNIMRTLSK---CG 303 (357)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-------HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT---CB
T ss_pred HHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH-------HHHHHHHHHHhhccccccHHHHHHHHHHHc---CC
Confidence 89999999999999998876533222233211 11000 00111121 1111 688999999999998 21
Q ss_pred ccChHHHHHHHH-HcCCcccccCcccHHHHHHHHHHHHHHcCccccccCCCCeEE-EehHHHHHH
Q 038861 268 EFEEEEIILLWT-AEGFLDQECDGRKMEELGREFVRELHSRSLFHQSSKDASRFV-MHSLINDLA 330 (1165)
Q Consensus 268 ~i~~~~l~~~w~-~~~~~~~~~~~~~~~~~~~~~l~~L~~~~li~~~~~~~~~~~-~H~li~~~~ 330 (1165)
+...+..... ..|. .........+++.|++.++|...+ ..|. .|++++++.
T Consensus 304 --~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~---~~y~f~~~~~~~~l 356 (357)
T 2fna_A 304 --KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKEG---EKYCPSEPLISLAF 356 (357)
T ss_dssp --CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESS---SCEEESSHHHHHHT
T ss_pred --CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecC---CEEEecCHHHHHhh
Confidence 4444443221 1221 011234677899999999998643 3576 578888764
No 97
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.58 E-value=4.2e-16 Score=173.09 Aligned_cols=247 Identities=15% Similarity=0.172 Sum_probs=148.5
Q ss_pred cCceEecCCCCccccchhhcCC--CCcceEEEcCCCCccccCCCCCcccccEEEeccCCCCCC-ChHHHhhcCccccccc
Q 038861 770 EDDLELSNCKGLTKLPQALLTL--SSLRELRISGCASLVSFPQAALPSQLRTFKIEHCNALES-LPEAWMRNSNSSLQSL 846 (1165)
Q Consensus 770 L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~l 846 (1165)
.+.++++++.+. +..+..+ ++++.|++++|......+....+++|++|++++|.+... ++..+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~----------- 114 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL----------- 114 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHH-----------
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHH-----------
Confidence 456777776544 4556666 788888888886555555555568888888888874322 22211
Q ss_pred cccceeecccccccCCchhhhcCCCCCcceEEEeCCCCCccc-cccCCccccceEeeccCcCcccccCCcCccccCCCCc
Q 038861 847 EIGTIEIEECNALESLPEAWMQDSSTSLESLNIDGCDSLTYI-ARIQLPPSLRRLIISDCYNLRTLTGDQGICSSRSGRT 925 (1165)
Q Consensus 847 ~l~~~~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 925 (1165)
..+++|++|++++|...... ..+..+++|++|++++|..+...
T Consensus 115 ----------------------~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~-------------- 158 (336)
T 2ast_B 115 ----------------------SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF-------------- 158 (336)
T ss_dssp ----------------------TTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH--------------
T ss_pred ----------------------hhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH--------------
Confidence 23567777777777533222 23455677777777776433210
Q ss_pred cccccCCCCcccccccceeecccccccccccCCCCCCCccEEEEcCC-CCchh-hhhhccc-C-ccceeeeeccc--cc-
Q 038861 926 SLTSFSSENELPATLEQLEVRFCSNLAFLSRNGNLPQALKYLEVSYC-SKLES-LAERLDN-T-SLEVIAISYLE--NL- 998 (1165)
Q Consensus 926 ~l~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~-~-~L~~L~L~~n~--~~- 998 (1165)
.++..+..+ ++|++|++++| .+... ++..+.. + +|++|++++|. +.
T Consensus 159 ---------~l~~~~~~~------------------~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~ 211 (336)
T 2ast_B 159 ---------ALQTLLSSC------------------SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK 211 (336)
T ss_dssp ---------HHHHHHHHC------------------TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH
T ss_pred ---------HHHHHHhcC------------------CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH
Confidence 000001111 45777777777 54432 3443333 6 78888888773 33
Q ss_pred ccCCcccCCCCCCCEEEEeCCC-CCccccCCCCCCCCcCeEEeecCCC-CCcCCcccCCCCCCceeeeccCCCCcccCCC
Q 038861 999 KSLPAGLHNLHHLQELKVYGCP-NLESFPEGGLPSTKLTKLTIGYCEN-LKALPNCMHNLTSLLHLEIGWCRSLVSFPED 1076 (1165)
Q Consensus 999 ~~~p~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~L~~n~~-~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~ 1076 (1165)
+.+|..+.++++|++|++++|. +....+..+..+++|+.|++++|.. .......+.++++|+.|++++| +++.
T Consensus 212 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~ 286 (336)
T 2ast_B 212 SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDG 286 (336)
T ss_dssp HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTT
T ss_pred HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHH
Confidence 3455666677888888888887 4455566677778888888888751 1111124677888888888877 2332
Q ss_pred --CCC-CCcceEEEecCCCCCcccc
Q 038861 1077 --GFP-TNLESLEVHDLKISKPLFE 1098 (1165)
Q Consensus 1077 --~~~-~~L~~L~l~~n~~~~~~~~ 1098 (1165)
..+ .+++.|++++|++++..++
T Consensus 287 ~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 287 TLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp CHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred HHHHHHhhCcceEEecccCccccCC
Confidence 122 3466677777877765544
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.58 E-value=1.1e-14 Score=169.25 Aligned_cols=175 Identities=21% Similarity=0.232 Sum_probs=106.0
Q ss_pred CccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeec
Q 038861 963 ALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGY 1042 (1165)
Q Consensus 963 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 1042 (1165)
+++.|++++|.+.+ +|..+ .++|++|++++|.+. .+| ..+++|++|++++|.+.+ +|. +.. +|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l-~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL-PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC-CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhH-cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 46667777665443 44433 266777777777665 455 345677777777776555 444 443 677777777
Q ss_pred CCCCCcCCcccCCCCCCceeeeccCCCCcccCCCCCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCCCCcccC
Q 038861 1043 CENLKALPNCMHNLTSLLHLEIGWCRSLVSFPEDGFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCPVLLSS 1122 (1165)
Q Consensus 1043 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 1122 (1165)
|.+.+ +|. .+++|+.|++++|.+.+ +|. .+++|+.|++++|++.+ ++. |. ++|+.|++++|.+..++.
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~L~~-lp~--l~--~~L~~L~Ls~N~L~~lp~ 197 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRNNQLTF-LPE--LP--ESLEALDVSTNLLESLPA 197 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC--CC--TTCCEEECCSSCCSSCCC
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC--cCCCcCEEECCCCCCCC-cch--hh--CCCCEEECcCCCCCchhh
Confidence 76655 444 46677777777776643 554 56677777777777665 333 33 667777777766654443
Q ss_pred CCCCCcc-------cEEEecCCCCcccHHHhhhcCCccceEeecCCC
Q 038861 1123 PWFPASL-------TVLHISYMPNLESLSLIVENLTSLEILILCKCP 1162 (1165)
Q Consensus 1123 ~~~~~~L-------~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 1162 (1165)
++.+| +.|++++| .++.+|..+..+++|+.|++++|+
T Consensus 198 --~~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 198 --VPVRNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp --CC--------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSS
T ss_pred --HHHhhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCc
Confidence 44466 77777764 455666665667777777777764
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.56 E-value=1.8e-14 Score=159.99 Aligned_cols=95 Identities=21% Similarity=0.284 Sum_probs=70.7
Q ss_pred eeeccCccccccccccccCcccccccccCCCCccccCc-ccccCCCccEEeccCcchhccccc-cccCCCCccee-eccC
Q 038861 391 VFSLWGYCNIFNLPNEIGNLRHLRFLNLSGTNIQILPE-SINSLYNLHTILLEDCRRLKKLCN-DMGNLTKLHHL-RNSN 467 (1165)
Q Consensus 391 ~l~l~~~~~l~~lp~~~~~l~~Lr~L~L~~~~i~~lp~-~~~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L-~l~~ 467 (1165)
+++.++. +++++|..+ .+++++|+|++|+|+.+|. .|.++++|++|+|++|...+.+|. .|.++++|+++ .+.+
T Consensus 13 ~v~C~~~-~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQES-KVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEEST-TCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCC-CCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 4566666 788899877 4688999999999999886 578999999999999887776664 57888888764 4455
Q ss_pred CCCCCCC-CCCcccccccceece
Q 038861 468 VHSLGEM-PKGFGKLTCLLTLGR 489 (1165)
Q Consensus 468 ~~~~~~~-p~~i~~L~~L~~L~~ 489 (1165)
|+ +..+ |..+..+++|++|..
T Consensus 90 N~-l~~l~~~~f~~l~~L~~L~l 111 (350)
T 4ay9_X 90 NN-LLYINPEAFQNLPNLQYLLI 111 (350)
T ss_dssp TT-CCEECTTSBCCCTTCCEEEE
T ss_pred Cc-ccccCchhhhhccccccccc
Confidence 55 4444 455677777777743
No 100
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.55 E-value=7.3e-16 Score=174.39 Aligned_cols=133 Identities=14% Similarity=0.092 Sum_probs=65.1
Q ss_pred CCccEEEEcCCCCc-hhhhh---hc-ccCccceeeeecccccc-----cCCcccCCCCCCCEEEEeCCCCC----ccccC
Q 038861 962 QALKYLEVSYCSKL-ESLAE---RL-DNTSLEVIAISYLENLK-----SLPAGLHNLHHLQELKVYGCPNL----ESFPE 1027 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~-~~~~~---~~-~~~~L~~L~L~~n~~~~-----~~p~~~~~l~~L~~L~L~~n~~~----~~~~~ 1027 (1165)
++|++|++++|.+. ..++. .+ ..++|+.|++++|.+.. ..|..+..+++|++|+|++|.+. ..+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 34667777766554 22331 11 12555566665555541 12334555555555555555543 34444
Q ss_pred CCCCCCCcCeEEeecCCCCCc----CCcccC--CCCCCceeeeccCCCCc----ccCCC--CCCCCcceEEEecCCCCC
Q 038861 1028 GGLPSTKLTKLTIGYCENLKA----LPNCMH--NLTSLLHLEIGWCRSLV----SFPED--GFPTNLESLEVHDLKISK 1094 (1165)
Q Consensus 1028 ~~~~l~~L~~L~L~~n~~~~~----~~~~~~--~l~~L~~L~l~~n~~~~----~~p~~--~~~~~L~~L~l~~n~~~~ 1094 (1165)
.+..+++|+.|+|++|.+... ++..+. .+++|+.|++++|++.. .+|.. ..+++|+.|++++|++.+
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 445555555555555554433 233332 25555555555555533 13332 234555555555555554
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.55 E-value=7.7e-15 Score=149.54 Aligned_cols=161 Identities=11% Similarity=-0.050 Sum_probs=99.5
Q ss_pred CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeee
Q 038861 985 TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEI 1064 (1165)
Q Consensus 985 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 1064 (1165)
++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|.++++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 45666666666665555555667777777777777766555555666777777777777766655555677777777777
Q ss_pred ccCCCCcccCCC-CCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCCCCcccCCCCCCcccEEEecCCCCcccH
Q 038861 1065 GWCRSLVSFPED-GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCPVLLSSPWFPASLTVLHISYMPNLESL 1143 (1165)
Q Consensus 1065 ~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~l~~l 1143 (1165)
++|.+.+..+.. ..+++|+.|++++|++.+. ++..+..+++|++|++++|... .-.++|+.|+++.|...+.+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~-----~~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNPWD-----CTCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCCBC-----CCTTTTHHHHHHHHHCTTTB
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCcccee-CHHHhccCCCccEEEecCCCee-----cCCCCHHHHHHHHHhCCcee
Confidence 777764433332 5567777777777777643 3334666777777777766221 11345666666665555555
Q ss_pred HHhhhcCC
Q 038861 1144 SLIVENLT 1151 (1165)
Q Consensus 1144 ~~~~~~l~ 1151 (1165)
|..++.++
T Consensus 182 p~~~~~l~ 189 (208)
T 2o6s_A 182 RNSAGSVA 189 (208)
T ss_dssp BCTTSSBC
T ss_pred eccCcccc
Confidence 55444443
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.55 E-value=2e-14 Score=144.72 Aligned_cols=150 Identities=14% Similarity=0.148 Sum_probs=121.4
Q ss_pred CCccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEee
Q 038861 962 QALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIG 1041 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 1041 (1165)
++|+.|++++|.+. .++.....++|++|++++|.+. .+..+..+++|++|++++|.+.+..+..+..+++|+.|+++
T Consensus 44 ~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLTGIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HTCCEEEEESSCCS-CCTTGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CCccEEeccCCCcc-ChHHHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 46899999998655 5564444589999999999543 23478889999999999999888778888899999999999
Q ss_pred cCCCCCcCCcccCCCCCCceeeeccCCCCcccCCCCCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCCC
Q 038861 1042 YCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPEDGFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCP 1117 (1165)
Q Consensus 1042 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 1117 (1165)
+|.+....|..+..+++|++|++++|+.++.+|....+++|+.|++++|++.+. + .+..+++|++|++++|.+
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~-~--~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY-R--GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCC-T--TGGGCSSCCEEEECBC--
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcCh-H--HhccCCCCCEEEeeCccc
Confidence 999888778888999999999999998557777557788999999999998763 2 478889999999988754
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.54 E-value=2.9e-14 Score=145.96 Aligned_cols=130 Identities=12% Similarity=0.048 Sum_probs=76.6
Q ss_pred CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeee
Q 038861 985 TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEI 1064 (1165)
Q Consensus 985 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 1064 (1165)
++++.|++++|.+.+..+..|..+++|++|+|++|.+.+..|..+..+++|++|+|++|.+....+..|.++++|+.|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 45555566665555555555666666666666666655555666666666666666666665544445566666666666
Q ss_pred ccCCCCcccCCC-CCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecC
Q 038861 1065 GWCRSLVSFPED-GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGG 1115 (1165)
Q Consensus 1065 ~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 1115 (1165)
++|++.+..|.. ..+++|+.|++++|++.+. ++..|..+++|+.|++++|
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTI-AKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSS
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEE-CHHHHhCCCCCCEEEeCCC
Confidence 666664444433 4556666666666666543 2233556666666666655
No 104
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.53 E-value=1.3e-15 Score=172.42 Aligned_cols=158 Identities=15% Similarity=-0.009 Sum_probs=88.9
Q ss_pred CCccEEEEcCCCCch----hhhhhccc-CccceeeeecccccccCCc----ccCCC---------CCCCEEEEeCCCCC-
Q 038861 962 QALKYLEVSYCSKLE----SLAERLDN-TSLEVIAISYLENLKSLPA----GLHNL---------HHLQELKVYGCPNL- 1022 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~----~~~~~~~~-~~L~~L~L~~n~~~~~~p~----~~~~l---------~~L~~L~L~~n~~~- 1022 (1165)
++|++|++++|.+.. .++..+.. ++|++|+|++|.+....+. .+..+ ++|++|++++|.+.
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 457777777776655 34444333 6777777777766433222 23233 67777777777655
Q ss_pred cccc---CCCCCCCCcCeEEeecCCCCC-----cCCcccCCCCCCceeeeccCCCC----cccCCC-CCCCCcceEEEec
Q 038861 1023 ESFP---EGGLPSTKLTKLTIGYCENLK-----ALPNCMHNLTSLLHLEIGWCRSL----VSFPED-GFPTNLESLEVHD 1089 (1165)
Q Consensus 1023 ~~~~---~~~~~l~~L~~L~L~~n~~~~-----~~~~~~~~l~~L~~L~l~~n~~~----~~~p~~-~~~~~L~~L~l~~ 1089 (1165)
..++ ..+..+++|++|++++|.+.. ..|..+..+++|+.|+|++|.+. ..+|.. ..+++|+.|++++
T Consensus 174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 253 (386)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence 2333 244455667777777776542 23335666677777777777663 333333 4556677777777
Q ss_pred CCCCCcc---cccccc--cCCCCcEEEEecCCCCc
Q 038861 1090 LKISKPL---FEWGLN--KFSSLRELQITGGCPVL 1119 (1165)
Q Consensus 1090 n~~~~~~---~~~~~~--~l~~L~~L~l~~n~~~~ 1119 (1165)
|++.+.. .+..+. .+++|+.|+|++|.+..
T Consensus 254 n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred CCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 7665431 111232 26666666666654443
No 105
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.53 E-value=1.1e-15 Score=170.67 Aligned_cols=130 Identities=8% Similarity=-0.052 Sum_probs=68.2
Q ss_pred CCccEEEEcCCCCchhhhhhc----c--cCccceeeeeccccccc----CCcccCCCC-CCCEEEEeCCCCCccccCC--
Q 038861 962 QALKYLEVSYCSKLESLAERL----D--NTSLEVIAISYLENLKS----LPAGLHNLH-HLQELKVYGCPNLESFPEG-- 1028 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~~~~~~----~--~~~L~~L~L~~n~~~~~----~p~~~~~l~-~L~~L~L~~n~~~~~~~~~-- 1028 (1165)
++|+.|++++|.+....+..+ . .++|++|++++|.+... ++..+..++ +|++|+|++|.+.+..+..
T Consensus 109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 188 (362)
T 3goz_A 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELA 188 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHH
Confidence 457778888776544333222 1 14677777777766542 223334444 6666777666654433322
Q ss_pred --CCCC-CCcCeEEeecCCCCCc----CCcccCC-CCCCceeeeccCCCCcccC----CC-CCCCCcceEEEecCC
Q 038861 1029 --GLPS-TKLTKLTIGYCENLKA----LPNCMHN-LTSLLHLEIGWCRSLVSFP----ED-GFPTNLESLEVHDLK 1091 (1165)
Q Consensus 1029 --~~~l-~~L~~L~L~~n~~~~~----~~~~~~~-l~~L~~L~l~~n~~~~~~p----~~-~~~~~L~~L~l~~n~ 1091 (1165)
+..+ ++|+.|+|++|.+... ++..+.. .++|++|++++|++...-+ .. ..+++|+.|++++|+
T Consensus 189 ~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 189 KFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 2223 3666666666665442 2333333 2366666666666533211 11 345556666666665
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.53 E-value=4e-14 Score=144.93 Aligned_cols=149 Identities=11% Similarity=0.002 Sum_probs=103.3
Q ss_pred cEEEEcCCCCchhhhhhcccCccceeeeecccccccCC-cccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecC
Q 038861 965 KYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLP-AGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYC 1043 (1165)
Q Consensus 965 ~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 1043 (1165)
+.+++++|.+. .+|..+ ...+++|++++|.+.+..| ..|..+++|++|+|++|.+.+..+..+..+++|++|+|++|
T Consensus 14 ~~l~~s~n~l~-~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCS-SCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcc-cCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 45666666433 344322 2456777777777766644 34677778888888888777666667777778888888888
Q ss_pred CCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCC
Q 038861 1044 ENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGC 1116 (1165)
Q Consensus 1044 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 1116 (1165)
.+.+..+..|.++++|++|++++|++.+..|.. ..+++|+.|++++|++.+..+ ..|..+++|+.|++++|.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP-GAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT-TTTTTCTTCCEEECCSCC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH-HHhcCCCCCCEEEecCcC
Confidence 777766667777888888888888776555554 667778888888887776433 347777778888877763
No 107
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.52 E-value=1.2e-15 Score=169.50 Aligned_cols=175 Identities=15% Similarity=0.183 Sum_probs=124.0
Q ss_pred CCccEEEEcCCCCchh-hhhhccc-CccceeeeecccccccCCcccCCCCCCCEEEEeCC-CCCc-cccCCCCCCCCcCe
Q 038861 962 QALKYLEVSYCSKLES-LAERLDN-TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGC-PNLE-SFPEGGLPSTKLTK 1037 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~-~~~~~~~-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n-~~~~-~~~~~~~~l~~L~~ 1037 (1165)
++|++|++++|.+... ++..+.. ++|++|++++|.+.+..+..+..+++|++|++++| .+.+ .++..+..+++|++
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 6788888888876544 5655554 88888888888877777777888888888888888 4443 35555667788888
Q ss_pred EEeecC-CCCCc-CCcccCCCC-CCceeeeccCC--CC-cccCCC-CCCCCcceEEEecCC-CCCcccccccccCCCCcE
Q 038861 1038 LTIGYC-ENLKA-LPNCMHNLT-SLLHLEIGWCR--SL-VSFPED-GFPTNLESLEVHDLK-ISKPLFEWGLNKFSSLRE 1109 (1165)
Q Consensus 1038 L~L~~n-~~~~~-~~~~~~~l~-~L~~L~l~~n~--~~-~~~p~~-~~~~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~ 1109 (1165)
|++++| .+... ++..+..++ +|++|++++|. +. +.++.. ..+++|+.|++++|. +.+..+. .+.++++|++
T Consensus 173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~ 251 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQH 251 (336)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCE
T ss_pred EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCE
Confidence 888888 66543 456677888 88888888884 32 233333 567888888888888 5544444 4778888888
Q ss_pred EEEecCC-CCcccC--CCCCCcccEEEecCC
Q 038861 1110 LQITGGC-PVLLSS--PWFPASLTVLHISYM 1137 (1165)
Q Consensus 1110 L~l~~n~-~~~~~~--~~~~~~L~~L~l~~~ 1137 (1165)
|++++|. ...... -.-.++|+.|++++|
T Consensus 252 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 252 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp EECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred eeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 8888863 111110 112568888888887
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.51 E-value=7e-14 Score=144.26 Aligned_cols=129 Identities=18% Similarity=0.099 Sum_probs=85.2
Q ss_pred CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeee
Q 038861 985 TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEI 1064 (1165)
Q Consensus 985 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 1064 (1165)
++|++|++++|.+.+..|..|.++++|++|+|++|.+.+..+..+..+++|+.|+|++|.+....+..|..+++|+.|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 56666666666666666666777777777777777765555555666777777777777766655556667777777777
Q ss_pred ccCCCCcccCCC-CCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecC
Q 038861 1065 GWCRSLVSFPED-GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGG 1115 (1165)
Q Consensus 1065 ~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 1115 (1165)
++|++. .+|.. ..+++|+.|++++|++.+. ++..|..+++|+.|++++|
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSI-PHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECTTS
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCcc-CHHHHhCCCCCCEEEeeCC
Confidence 777763 45544 5667777777777776643 3344666777777777765
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.51 E-value=5.1e-14 Score=151.26 Aligned_cols=166 Identities=17% Similarity=0.065 Sum_probs=128.8
Q ss_pred CCccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEee
Q 038861 962 QALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIG 1041 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 1041 (1165)
++|+.|++++|.+. .++.....++|++|++++|.+.+..+ +.++++|++|++++|.+.+ ++ .+..+++|+.|+++
T Consensus 46 ~~L~~L~l~~~~i~-~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 46 NSIDQIIANNSDIK-SVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE 120 (291)
T ss_dssp HTCCEEECTTSCCC-CCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred CcccEEEccCCCcc-cChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECC
Confidence 56899999998654 44554445899999999998866544 8889999999999998665 33 37888899999999
Q ss_pred cCCCCCcCCcccCCCCCCceeeeccCCCCcccCCCCCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCCCCccc
Q 038861 1042 YCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPEDGFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCPVLLS 1121 (1165)
Q Consensus 1042 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 1121 (1165)
+|.+... ..+..+++|+.|++++|.+.+ ++....+++|+.|++++|++.+..+ +..+++|+.|++++|.+..+.
T Consensus 121 ~n~i~~~--~~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~l~ 194 (291)
T 1h6t_A 121 HNGISDI--NGLVHLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLR 194 (291)
T ss_dssp TSCCCCC--GGGGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCG
T ss_pred CCcCCCC--hhhcCCCCCCEEEccCCcCCc-chhhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCcCCCCh
Confidence 9987764 458888999999999998844 3444778899999999999887432 788899999999988776655
Q ss_pred CCCCCCcccEEEecCCC
Q 038861 1122 SPWFPASLTVLHISYMP 1138 (1165)
Q Consensus 1122 ~~~~~~~L~~L~l~~~~ 1138 (1165)
.-.-.++|+.|++++|+
T Consensus 195 ~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 195 ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp GGTTCTTCSEEEEEEEE
T ss_pred hhccCCCCCEEECcCCc
Confidence 43445688888888865
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.51 E-value=7e-14 Score=143.11 Aligned_cols=137 Identities=13% Similarity=0.035 Sum_probs=121.1
Q ss_pred CCCCCCccEEEEcCCCCchhhhhhccc-CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcC
Q 038861 958 GNLPQALKYLEVSYCSKLESLAERLDN-TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLT 1036 (1165)
Q Consensus 958 ~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 1036 (1165)
..+|++++.|++++|.+.+..+..+.. ++|++|+|++|.+.+..|..|.++++|++|+|++|.+....+..|..+++|+
T Consensus 28 ~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~ 107 (220)
T 2v9t_B 28 TNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQ 107 (220)
T ss_dssp SSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCC
Confidence 456678999999999877666655555 9999999999999988899999999999999999998877777789999999
Q ss_pred eEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceEEEecCCCCC
Q 038861 1037 KLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESLEVHDLKISK 1094 (1165)
Q Consensus 1037 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~ 1094 (1165)
+|+|++|.+.+..|..|.++++|+.|++++|++.+..+.. ..+++|+.|++++|++..
T Consensus 108 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 108 LLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred EEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 9999999999988999999999999999999996655544 778999999999999864
No 111
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.50 E-value=7.2e-14 Score=150.12 Aligned_cols=168 Identities=15% Similarity=0.071 Sum_probs=124.8
Q ss_pred ccccceeecccccccccccCCCCCCCccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCCCCCCEEEEe
Q 038861 938 ATLEQLEVRFCSNLAFLSRNGNLPQALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVY 1017 (1165)
Q Consensus 938 ~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~ 1017 (1165)
+.++.+.+..+.. ...+. ....++|+.|++++|.+.+..+ ....++|++|++++|.+.+ + ..+..+++|++|+++
T Consensus 46 ~~L~~L~l~~~~i-~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 46 NSIDQIIANNSDI-KSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLE 120 (291)
T ss_dssp HTCCEEECTTSCC-CCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECT
T ss_pred CcccEEEccCCCc-ccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECC
Confidence 4566666665532 22221 1223679999999987665444 4444899999999998865 3 348889999999999
Q ss_pred CCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCCCCCCCcceEEEecCCCCCccc
Q 038861 1018 GCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPEDGFPTNLESLEVHDLKISKPLF 1097 (1165)
Q Consensus 1018 ~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~ 1097 (1165)
+|.+.+. ..+..+++|+.|++++|.+... ..+..+++|+.|++++|++.+..+ ...+++|+.|++++|++.+.
T Consensus 121 ~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l-- 193 (291)
T 1h6t_A 121 HNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL-- 193 (291)
T ss_dssp TSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC--
T ss_pred CCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCC--
Confidence 9987664 3577788999999999988765 568889999999999998855444 66788999999999998763
Q ss_pred ccccccCCCCcEEEEecCCCC
Q 038861 1098 EWGLNKFSSLRELQITGGCPV 1118 (1165)
Q Consensus 1098 ~~~~~~l~~L~~L~l~~n~~~ 1118 (1165)
+ .+..+++|+.|++++|...
T Consensus 194 ~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 194 R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp G-GGTTCTTCSEEEEEEEEEE
T ss_pred h-hhccCCCCCEEECcCCccc
Confidence 2 3888999999999987543
No 112
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.50 E-value=5e-14 Score=143.49 Aligned_cols=152 Identities=16% Similarity=0.001 Sum_probs=126.6
Q ss_pred CCCCCCccEEEEcCCCCchhhhhhccc-CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcC
Q 038861 958 GNLPQALKYLEVSYCSKLESLAERLDN-TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLT 1036 (1165)
Q Consensus 958 ~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 1036 (1165)
..++++|++|++++|.+.+..+..+.. ++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|+
T Consensus 24 ~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 103 (208)
T 2o6s_A 24 TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLK 103 (208)
T ss_dssp SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCC
Confidence 455678999999999877555555544 9999999999999877777789999999999999998877777788999999
Q ss_pred eEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecC
Q 038861 1037 KLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGG 1115 (1165)
Q Consensus 1037 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 1115 (1165)
+|++++|.+.+..+..|.++++|+.|++++|++.+..+.. ..+++|+.|++++|++.+ .+++|++|++++|
T Consensus 104 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~L~~~~n 175 (208)
T 2o6s_A 104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWIN 175 (208)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--------CTTTTHHHHHHHH
T ss_pred EEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--------CCCCHHHHHHHHH
Confidence 9999999998877777899999999999999996554443 778999999999998653 4578888888765
Q ss_pred CC
Q 038861 1116 CP 1117 (1165)
Q Consensus 1116 ~~ 1117 (1165)
..
T Consensus 176 ~~ 177 (208)
T 2o6s_A 176 KH 177 (208)
T ss_dssp HC
T ss_pred hC
Confidence 43
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.49 E-value=5.1e-14 Score=156.92 Aligned_cols=156 Identities=17% Similarity=0.040 Sum_probs=105.4
Q ss_pred CCCCCCccEEEEcCCCCchhhhhhcc--cCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCc
Q 038861 958 GNLPQALKYLEVSYCSKLESLAERLD--NTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKL 1035 (1165)
Q Consensus 958 ~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 1035 (1165)
..+|..++.|++++|.+.+..+..+. .++|+.|+|++|.+.+..+..|.++++|++|+|++|.+.+..+..|..+++|
T Consensus 35 ~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 114 (361)
T 2xot_A 35 QSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQAL 114 (361)
T ss_dssp SSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred ccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCC
Confidence 34566677777777766555555443 3777777777777766666677777777777777777666666667777777
Q ss_pred CeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC-----CCCCCcceEEEecCCCCCcccccccccCCCC--c
Q 038861 1036 TKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-----GFPTNLESLEVHDLKISKPLFEWGLNKFSSL--R 1108 (1165)
Q Consensus 1036 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-----~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L--~ 1108 (1165)
+.|+|++|.+....|..|.++++|+.|+|++|++.. +|.. ..+++|+.|++++|++.. ++...+..++.+ +
T Consensus 115 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~~~l~ 192 (361)
T 2xot_A 115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKK-LPLTDLQKLPAWVKN 192 (361)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCCC-CCHHHHHHSCHHHHT
T ss_pred CEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCCc-cCHHHhhhccHhhcc
Confidence 777777777777667777777777777777777743 3432 246777777777777764 333346666653 6
Q ss_pred EEEEecC
Q 038861 1109 ELQITGG 1115 (1165)
Q Consensus 1109 ~L~l~~n 1115 (1165)
.|++++|
T Consensus 193 ~l~l~~N 199 (361)
T 2xot_A 193 GLYLHNN 199 (361)
T ss_dssp TEECCSS
T ss_pred eEEecCC
Confidence 6777765
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.48 E-value=1.6e-13 Score=152.88 Aligned_cols=174 Identities=15% Similarity=-0.005 Sum_probs=138.2
Q ss_pred ccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccC-CCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeec
Q 038861 964 LKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLH-NLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGY 1042 (1165)
Q Consensus 964 L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 1042 (1165)
-+.++++++.+ ..+|..+ .+.++.|+|++|.+.+..+..+. ++++|++|+|++|.+.+..+..|..+++|++|+|++
T Consensus 20 ~~~l~c~~~~l-~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 20 SNILSCSKQQL-PNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TTEEECCSSCC-SSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCc-CccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 35788888754 4455432 26789999999999888777787 899999999999998888888899999999999999
Q ss_pred CCCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceEEEecCCCCCccccccc---ccCCCCcEEEEecCCCC
Q 038861 1043 CENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESLEVHDLKISKPLFEWGL---NKFSSLRELQITGGCPV 1118 (1165)
Q Consensus 1043 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~---~~l~~L~~L~l~~n~~~ 1118 (1165)
|.+....+..|.++++|+.|+|++|++....|.. ..+++|+.|++++|++.+ ++...| ..+++|+.|+|++|.+.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCC
Confidence 9998877778999999999999999996665655 788999999999999986 444445 56899999999998776
Q ss_pred cccCCCC--CCc--ccEEEecCCCCc
Q 038861 1119 LLSSPWF--PAS--LTVLHISYMPNL 1140 (1165)
Q Consensus 1119 ~~~~~~~--~~~--L~~L~l~~~~~l 1140 (1165)
.+....+ .+. ++.|++++||..
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 5543211 122 477888887754
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.48 E-value=1.2e-13 Score=138.94 Aligned_cols=147 Identities=17% Similarity=0.123 Sum_probs=107.5
Q ss_pred CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeee
Q 038861 985 TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEI 1064 (1165)
Q Consensus 985 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 1064 (1165)
++|+.|++++|.+. .+| .+..+++|++|++++|.+.. + ..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN-Y-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC-C-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc-c-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 78889999998885 555 68888899999999885433 2 35777888999999998888777778888899999999
Q ss_pred ccCCCCcccCCC-CCCCCcceEEEecCC-CCCcccccccccCCCCcEEEEecCCCCcccCCCCCCcccEEEecCCC
Q 038861 1065 GWCRSLVSFPED-GFPTNLESLEVHDLK-ISKPLFEWGLNKFSSLRELQITGGCPVLLSSPWFPASLTVLHISYMP 1138 (1165)
Q Consensus 1065 ~~n~~~~~~p~~-~~~~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~ 1138 (1165)
++|.+.+..+.. ..+++|+.|++++|+ +.. ++ .+..+++|+.|++++|.+..+....-.++|+.|++++|+
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~--~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM--PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG--GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC-
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH--hhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcc
Confidence 998886655544 778889999999888 543 33 378888888888888755443321223445555555543
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.47 E-value=1.2e-13 Score=141.35 Aligned_cols=139 Identities=12% Similarity=-0.050 Sum_probs=122.1
Q ss_pred CCCCCCccEEEEcCCCCchhhhh-hcc-cCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCc
Q 038861 958 GNLPQALKYLEVSYCSKLESLAE-RLD-NTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKL 1035 (1165)
Q Consensus 958 ~~~~~~L~~L~l~~~~~~~~~~~-~~~-~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 1035 (1165)
..++..++.|++++|.+.+..+. .+. .++|++|++++|.+.+..+..|.++++|++|+|++|.+.+..+..+..+++|
T Consensus 28 ~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 107 (220)
T 2v70_A 28 EHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL 107 (220)
T ss_dssp SCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC
T ss_pred cCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCC
Confidence 34567789999999987766443 233 3999999999999988888899999999999999999988888889999999
Q ss_pred CeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceEEEecCCCCCcc
Q 038861 1036 TKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESLEVHDLKISKPL 1096 (1165)
Q Consensus 1036 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~~ 1096 (1165)
++|+|++|.+.+..|..|.++++|+.|++++|++.+..|.. ..+++|+.|++++|++....
T Consensus 108 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 108 KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 99999999999988999999999999999999997766766 78999999999999987543
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.47 E-value=2.5e-13 Score=140.10 Aligned_cols=148 Identities=13% Similarity=-0.015 Sum_probs=123.7
Q ss_pred ccccccccccCCCCCCCccEEEEcCCCCchhhhhhccc-CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccc
Q 038861 947 FCSNLAFLSRNGNLPQALKYLEVSYCSKLESLAERLDN-TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESF 1025 (1165)
Q Consensus 947 ~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~ 1025 (1165)
.|...........+|++|+.|++++|.+.+..+..+.. ++|++|+|++|.+....+..|.++++|++|+|++|.+.+..
T Consensus 25 ~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~ 104 (229)
T 3e6j_A 25 DCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP 104 (229)
T ss_dssp ECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred EccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccC
Confidence 34433333444567789999999999888877776655 99999999999997666677899999999999999988877
Q ss_pred cCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceEEEecCCCCCc
Q 038861 1026 PEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESLEVHDLKISKP 1095 (1165)
Q Consensus 1026 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~ 1095 (1165)
+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|++.+..+.. ..+++|+.|++++|++...
T Consensus 105 ~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 105 SAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred hhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 778899999999999999987 57888999999999999999996544443 7789999999999998754
No 118
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.43 E-value=2.1e-13 Score=160.91 Aligned_cols=143 Identities=17% Similarity=0.099 Sum_probs=72.4
Q ss_pred CCccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEee
Q 038861 962 QALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIG 1041 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 1041 (1165)
++|+.|++++|.+.+..+ ....++|+.|+|++|.+.+ +| .+..+++|++|+|++|.+.+. +.+..+++|+.|+|+
T Consensus 65 ~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls 139 (605)
T 1m9s_A 65 PNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLG 139 (605)
T ss_dssp TTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECC
T ss_pred CCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECC
Confidence 445555555554433222 2223555555555555533 22 455555555555555554432 234455555555555
Q ss_pred cCCCCCcCCcccCCCCCCceeeeccCCCCcccCCCCCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecC
Q 038861 1042 YCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPEDGFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGG 1115 (1165)
Q Consensus 1042 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 1115 (1165)
+|.+... ..+..+++|+.|+|++|.+.+..| ...+++|+.|+|++|++.+. + .+..+++|+.|+|++|
T Consensus 140 ~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l--~-~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 140 NNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL--R-ALAGLKNLDVLELFSQ 207 (605)
T ss_dssp SSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC--G-GGTTCTTCSEEECCSE
T ss_pred CCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC--h-HHccCCCCCEEEccCC
Confidence 5555443 345555555555555555543333 34455555555555555542 1 2555555555555554
No 119
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.42 E-value=4.3e-12 Score=143.46 Aligned_cols=289 Identities=13% Similarity=0.036 Sum_probs=174.4
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhc----c--CCceEEEEEcCCC-CHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRR----H--FEIKAWTFVSEDF-DVFRVT 73 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~----~--f~~~~w~~~~~~~-~~~~~~ 73 (1165)
+||+++++++.+++..... ....+.+.|+|++|+||||+|+++++...... . ....+|+.+.... +...++
T Consensus 23 ~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 100 (384)
T 2qby_B 23 PFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVL 100 (384)
T ss_dssp TTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHH
T ss_pred CChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHH
Confidence 6999999999988864211 12346899999999999999999986421111 1 3355677776666 888888
Q ss_pred HHHHHhccCCCC--CCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCccc-hhh-hhcccCCCCCCcEEEEecCchHH---
Q 038861 74 KSILMSISNVTV--NDNDLNSLQEKLEKELIKKKFLLVLDDMWNENYND-WEL-LNRPFKAGTSGSKIIVTTRNRVV--- 146 (1165)
Q Consensus 74 ~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~-~~~-l~~~~~~~~~~~~iiiTtR~~~~--- 146 (1165)
..++..+..... ...........+.+.++.++.+||+||++...... .+. +...+... .+..||+||+....
T Consensus 101 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~~~ 179 (384)
T 2qby_B 101 SSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINVRDY 179 (384)
T ss_dssp HHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTTTT
T ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCchHhh
Confidence 888887733221 22334566777777787766699999995532111 122 21111111 67889999886521
Q ss_pred -HHhh--cccceeeCCCCCHHHHHHHHhhcccC-CCCCCCCcchHHHHHHHHHHcC---CCch-HHHHHHhh--hcC---
Q 038861 147 -AERV--GSVREYPLGELSKEDCLRVLTQHSLG-ATDFNTHQSLKEVREKIAMKCK---GLPL-AAKTLGGL--LRG--- 213 (1165)
Q Consensus 147 -~~~~--~~~~~~~l~~l~~~e~~~lf~~~~~~-~~~~~~~~~~~~~~~~i~~~~~---g~Pl-al~~~~~~--l~~--- 213 (1165)
.... .-...+++++++.++..+++...+.. -......+ +..+.+++.++ |.|. |+.++... +..
T Consensus 180 l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~ 256 (384)
T 2qby_B 180 MEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLASGGG 256 (384)
T ss_dssp SCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSS
T ss_pred hCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCC
Confidence 1111 11138999999999999999987421 11111122 56777888887 8876 44443222 221
Q ss_pred CCChhHHHHHHhccccccCCCCCChhHHHHhccccCcHHHHhHhhhhcCCCCC-CccChHHHHHHHHHcCCcccccCccc
Q 038861 214 KHDPKDWEIVLNADVWDFADDGCDIIPALKVSYRFLPPQLKQCFAYCSLFPKD-YEFEEEEIILLWTAEGFLDQECDGRK 292 (1165)
Q Consensus 214 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~la~f~~~-~~i~~~~l~~~w~~~~~~~~~~~~~~ 292 (1165)
.-+.+.+..++... ....+.-+++.|+++++.++..++. ... ..+. ..........|. . ..
T Consensus 257 ~i~~~~v~~~~~~~----------~~~~~~~~~~~l~~~~~~~l~al~~-~~~~~~~~-~~~~~~~~~~g~-~-----~~ 318 (384)
T 2qby_B 257 IIRKEHVDKAIVDY----------EQERLIEAVKALPFHYKLALRSLIE-SEDVMSAH-KMYTDLCNKFKQ-K-----PL 318 (384)
T ss_dssp CCCHHHHHHHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHT-CCBHHHHH-HHHHHHHHHTTC-C-----CC
T ss_pred ccCHHHHHHHHHHH----------hcchHHHHHHcCCHHHHHHHHHHHH-hcccChHH-HHHHHHHHHcCC-C-----CC
Confidence 12345555554432 1234667788999999999888887 111 0110 111111112221 1 11
Q ss_pred HHHHHHHHHHHHHHcCccccc
Q 038861 293 MEELGREFVRELHSRSLFHQS 313 (1165)
Q Consensus 293 ~~~~~~~~l~~L~~~~li~~~ 313 (1165)
......++++.|.++++++..
T Consensus 319 ~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 319 SYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp CHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHhCCCEEEE
Confidence 234577889999999999863
No 120
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.42 E-value=4.5e-13 Score=158.03 Aligned_cols=167 Identities=17% Similarity=0.062 Sum_probs=132.1
Q ss_pred CCccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEee
Q 038861 962 QALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIG 1041 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 1041 (1165)
++|+.|++++|.+ ..++.....++|+.|+|++|.+.+..| +..+++|+.|+|++|.+.+ + +.+..+++|+.|+|+
T Consensus 43 ~~L~~L~l~~n~i-~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 43 NSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKSLSLE 117 (605)
T ss_dssp TTCCCCBCTTCCC-CCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCEEECT
T ss_pred CCCCEEECcCCCC-CCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCCEEEec
Confidence 5688999998864 445554455999999999998876554 8889999999999998665 3 368888999999999
Q ss_pred cCCCCCcCCcccCCCCCCceeeeccCCCCcccCCCCCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCCCCccc
Q 038861 1042 YCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPEDGFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCPVLLS 1121 (1165)
Q Consensus 1042 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 1121 (1165)
+|.+... ..+..+++|+.|+|++|.+.+. +....+++|+.|+|++|++.+..+ +..+++|+.|+|++|.+..+.
T Consensus 118 ~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l~ 191 (605)
T 1m9s_A 118 HNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLR 191 (605)
T ss_dssp TSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCG
T ss_pred CCCCCCC--ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCCh
Confidence 9988763 3588899999999999988543 544788999999999999887543 888999999999998777664
Q ss_pred CCCCCCcccEEEecCCCC
Q 038861 1122 SPWFPASLTVLHISYMPN 1139 (1165)
Q Consensus 1122 ~~~~~~~L~~L~l~~~~~ 1139 (1165)
...-+++|+.|+|++|+.
T Consensus 192 ~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 192 ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp GGTTCTTCSEEECCSEEE
T ss_pred HHccCCCCCEEEccCCcC
Confidence 434467889999988653
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.41 E-value=2.2e-13 Score=143.71 Aligned_cols=164 Identities=15% Similarity=0.038 Sum_probs=124.5
Q ss_pred CccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeec
Q 038861 963 ALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGY 1042 (1165)
Q Consensus 963 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 1042 (1165)
.+..++++++... .++.....++|++|++++|.+. .+| .+..+++|++|++++|.+.+..+ +..+++|+.|++++
T Consensus 20 ~l~~l~l~~~~i~-~~~~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 20 NAVKQNLGKQSVT-DLVSQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHTCSCTT-SEECHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHHhcCCCcc-cccchhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 4666777777543 3443333488999999999875 455 68888999999999998776555 78889999999999
Q ss_pred CCCCCcCCcccCCCCCCceeeeccCCCCcccCCCCCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCCCCcccC
Q 038861 1043 CENLKALPNCMHNLTSLLHLEIGWCRSLVSFPEDGFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCPVLLSS 1122 (1165)
Q Consensus 1043 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 1122 (1165)
|.+.+. |. +.. ++|+.|++++|.+.+ ++....+++|+.|++++|++.+. + .+..+++|+.|++++|.+..+..
T Consensus 95 N~l~~l-~~-~~~-~~L~~L~L~~N~l~~-~~~l~~l~~L~~L~Ls~N~i~~~--~-~l~~l~~L~~L~L~~N~i~~~~~ 167 (263)
T 1xeu_A 95 NRLKNL-NG-IPS-ACLSRLFLDNNELRD-TDSLIHLKNLEILSIRNNKLKSI--V-MLGFLSKLEVLDLHGNEITNTGG 167 (263)
T ss_dssp SCCSCC-TT-CCC-SSCCEEECCSSCCSB-SGGGTTCTTCCEEECTTSCCCBC--G-GGGGCTTCCEEECTTSCCCBCTT
T ss_pred CccCCc-Cc-ccc-CcccEEEccCCccCC-ChhhcCcccccEEECCCCcCCCC--h-HHccCCCCCEEECCCCcCcchHH
Confidence 988763 33 333 899999999998844 55557889999999999998864 2 48889999999999987776633
Q ss_pred CCCCCcccEEEecCCC
Q 038861 1123 PWFPASLTVLHISYMP 1138 (1165)
Q Consensus 1123 ~~~~~~L~~L~l~~~~ 1138 (1165)
-.-.++|+.|++++|+
T Consensus 168 l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQK 183 (263)
T ss_dssp STTCCCCCEEEEEEEE
T ss_pred hccCCCCCEEeCCCCc
Confidence 3345788899998865
No 122
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.40 E-value=1.6e-12 Score=151.13 Aligned_cols=169 Identities=20% Similarity=0.158 Sum_probs=129.8
Q ss_pred CCCCccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEE
Q 038861 960 LPQALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLT 1039 (1165)
Q Consensus 960 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 1039 (1165)
++++|+.|++++|.+. .+| ...++|++|++++|.+.+ +|. +.. +|++|++++|.+.+ +|. .+++|+.|+
T Consensus 78 l~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 146 (571)
T 3cvr_A 78 LPPQITVLEITQNALI-SLP--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYIN 146 (571)
T ss_dssp CCTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred HcCCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEe
Confidence 3467999999999765 566 334899999999999877 666 655 99999999999777 555 578999999
Q ss_pred eecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCCCCCCCcceEEEecCCCCCcccccccccCCCC-------cEEEE
Q 038861 1040 IGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPEDGFPTNLESLEVHDLKISKPLFEWGLNKFSSL-------RELQI 1112 (1165)
Q Consensus 1040 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L-------~~L~l 1112 (1165)
+++|.+.+ +|. .+++|+.|++++|++.+ +|. ..++|+.|++++|++.. ++. +.. +| +.|++
T Consensus 147 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~--l~~~L~~L~Ls~N~L~~-lp~--~~~--~L~~~~~~L~~L~L 214 (571)
T 3cvr_A 147 ADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE--LPESLEALDVSTNLLES-LPA--VPV--RNHHSEETEIFFRC 214 (571)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSS-CCC--CC----------CCEEEEC
T ss_pred CCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch--hhCCCCEEECcCCCCCc-hhh--HHH--hhhcccccceEEec
Confidence 99999876 555 67899999999999855 666 23899999999999884 443 433 66 99999
Q ss_pred ecCCCCcccCCC-CCCcccEEEecCCCCcccHHHhhhcCC
Q 038861 1113 TGGCPVLLSSPW-FPASLTVLHISYMPNLESLSLIVENLT 1151 (1165)
Q Consensus 1113 ~~n~~~~~~~~~-~~~~L~~L~l~~~~~l~~l~~~~~~l~ 1151 (1165)
++|.+..++... -.++|+.|++++|+....+|..+..++
T Consensus 215 s~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 215 RENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred CCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 999877655421 257899999999887777777666543
No 123
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.40 E-value=7.2e-12 Score=142.11 Aligned_cols=288 Identities=16% Similarity=0.095 Sum_probs=174.0
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchh----ccCCceEEEEEcCCCCHHHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVR----RHFEIKAWTFVSEDFDVFRVTKSI 76 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~w~~~~~~~~~~~~~~~i 76 (1165)
+||+++++++.+++...- .....+.+.|+|++|+||||+|+++++..... +.-...+|+++....+...+...+
T Consensus 22 ~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 99 (387)
T 2v1u_A 22 PHREAELRRLAEVLAPAL--RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAI 99 (387)
T ss_dssp TTCHHHHHHHHHTTGGGT--SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHH
Confidence 699999999999985431 12234678999999999999999998532111 002245677777777888899999
Q ss_pred HHhccCCCC-CCCCHHHHHHHHHHHh--cCceEEEEEeCCCCCCcc--chhhh---hcccCCC--CCCcEEEEecCchH-
Q 038861 77 LMSISNVTV-NDNDLNSLQEKLEKEL--IKKKFLLVLDDMWNENYN--DWELL---NRPFKAG--TSGSKIIVTTRNRV- 145 (1165)
Q Consensus 77 ~~~l~~~~~-~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~~~~--~~~~l---~~~~~~~--~~~~~iiiTtR~~~- 145 (1165)
+.+++.... ......+....+.+.+ .+++.+||+|+++..... ..+.+ ....... ..+..+|+||+...
T Consensus 100 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~ 179 (387)
T 2v1u_A 100 AEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGF 179 (387)
T ss_dssp HHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTT
T ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCch
Confidence 988865432 2233556666666666 356899999999653221 11222 2222111 34667788877652
Q ss_pred -------HHHhhcccceeeCCCCCHHHHHHHHhhccc---CCCCCCCCcchHHHHHHHHHHcC---CCch-HHHHHHhhh
Q 038861 146 -------VAERVGSVREYPLGELSKEDCLRVLTQHSL---GATDFNTHQSLKEVREKIAMKCK---GLPL-AAKTLGGLL 211 (1165)
Q Consensus 146 -------~~~~~~~~~~~~l~~l~~~e~~~lf~~~~~---~~~~~~~~~~~~~~~~~i~~~~~---g~Pl-al~~~~~~l 211 (1165)
+...+ ....+.+++++.++..+++...+. .... ..+ ++.+.+++.++ |.|- ++.++....
T Consensus 180 ~~~l~~~l~~r~-~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~--~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 180 VENLEPRVKSSL-GEVELVFPPYTAPQLRDILETRAEEAFNPGV--LDP---DVVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp SSSSCHHHHTTT-TSEECCBCCCCHHHHHHHHHHHHHHHBCTTT--BCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HhhhCHHHHhcC-CCeEEeeCCCCHHHHHHHHHHHHHhhccCCC--CCH---HHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 11111 114789999999999999987742 2111 112 45677888887 9993 333332221
Q ss_pred ---c--CC--CChhHHHHHHhccccccCCCCCChhHHHHhccccCcHHHHhHhhhhc-CCCCCCccChHHHHHHHH----
Q 038861 212 ---R--GK--HDPKDWEIVLNADVWDFADDGCDIIPALKVSYRFLPPQLKQCFAYCS-LFPKDYEFEEEEIILLWT---- 279 (1165)
Q Consensus 212 ---~--~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~la-~f~~~~~i~~~~l~~~w~---- 279 (1165)
. +. -+.+.+..+.... ....+.-++..++++++..+..++ ++.....+....+.+...
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEI----------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTS 323 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 1 11 1234444444321 122456678899999998888777 443223444443333221
Q ss_pred HcCCcccccCcccHHHHHHHHHHHHHHcCcccc
Q 038861 280 AEGFLDQECDGRKMEELGREFVRELHSRSLFHQ 312 (1165)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~l~~L~~~~li~~ 312 (1165)
..| .. ......+..+++.|...++++.
T Consensus 324 ~~~-~~-----~~~~~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 324 TLG-LE-----HVTLRRVSGIISELDMLGIVKS 350 (387)
T ss_dssp HTT-CC-----CCCHHHHHHHHHHHHHTTSEEE
T ss_pred hcC-CC-----CCCHHHHHHHHHHHHhCCCeEE
Confidence 122 11 1224567788999999999986
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.39 E-value=5.8e-13 Score=130.21 Aligned_cols=134 Identities=13% Similarity=0.019 Sum_probs=97.6
Q ss_pred Cccceeeeeccccc-ccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceee
Q 038861 985 TSLEVIAISYLENL-KSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLE 1063 (1165)
Q Consensus 985 ~~L~~L~L~~n~~~-~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 1063 (1165)
++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+.++++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45566666666655 46777778888888888888886655 6677788888888888888777777777788888888
Q ss_pred eccCCCCccc--CCCCCCCCcceEEEecCCCCCccc--ccccccCCCCcEEEEecCCCCcc
Q 038861 1064 IGWCRSLVSF--PEDGFPTNLESLEVHDLKISKPLF--EWGLNKFSSLRELQITGGCPVLL 1120 (1165)
Q Consensus 1064 l~~n~~~~~~--p~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~l~~L~~L~l~~n~~~~~ 1120 (1165)
+++|++.+.. +....+++|+.|++++|++.+..+ ...+..+++|++|++++|....+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 8888874422 122677888888888888876432 13477888888888888755443
No 125
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.36 E-value=5.9e-14 Score=156.76 Aligned_cols=205 Identities=15% Similarity=0.098 Sum_probs=148.9
Q ss_pred CCCCCCccEEEEcCCCCchhhh----hhccc-C-ccceeeeecccccccCCcccCCC-----CCCCEEEEeCCCCCcccc
Q 038861 958 GNLPQALKYLEVSYCSKLESLA----ERLDN-T-SLEVIAISYLENLKSLPAGLHNL-----HHLQELKVYGCPNLESFP 1026 (1165)
Q Consensus 958 ~~~~~~L~~L~l~~~~~~~~~~----~~~~~-~-~L~~L~L~~n~~~~~~p~~~~~l-----~~L~~L~L~~n~~~~~~~ 1026 (1165)
...+.+|++|++++|.+....+ ..+.. + +|++|+|++|.+....+..+..+ ++|++|+|++|.+....+
T Consensus 18 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 3456779999999998665544 34433 5 89999999999988776666654 999999999999776554
Q ss_pred CC----CCCC-CCcCeEEeecCCCCCcCCcc----cCC-CCCCceeeeccCCCCcc----cCCC-CCC-CCcceEEEecC
Q 038861 1027 EG----GLPS-TKLTKLTIGYCENLKALPNC----MHN-LTSLLHLEIGWCRSLVS----FPED-GFP-TNLESLEVHDL 1090 (1165)
Q Consensus 1027 ~~----~~~l-~~L~~L~L~~n~~~~~~~~~----~~~-l~~L~~L~l~~n~~~~~----~p~~-~~~-~~L~~L~l~~n 1090 (1165)
.. +..+ ++|++|++++|.+....+.. +.. .++|++|++++|.+... ++.. ..+ ++|++|++++|
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence 43 3334 79999999999987765544 344 36999999999998532 2222 223 59999999999
Q ss_pred CCCCcccc---cccccC-CCCcEEEEecCCCCcccCC-------CCCCcccEEEecCCCCcc----cHHHhhhcCCccce
Q 038861 1091 KISKPLFE---WGLNKF-SSLRELQITGGCPVLLSSP-------WFPASLTVLHISYMPNLE----SLSLIVENLTSLEI 1155 (1165)
Q Consensus 1091 ~~~~~~~~---~~~~~l-~~L~~L~l~~n~~~~~~~~-------~~~~~L~~L~l~~~~~l~----~l~~~~~~l~~L~~ 1155 (1165)
++.+..+. ..+..+ ++|++|+|++|.+...... ..+++|++|++++|..-. .+...+..+++|++
T Consensus 178 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~ 257 (362)
T 3goz_A 178 NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSE
T ss_pred CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccE
Confidence 99764432 224455 5999999999876652221 124699999999975432 23445678899999
Q ss_pred EeecCCC
Q 038861 1156 LILCKCP 1162 (1165)
Q Consensus 1156 L~l~~c~ 1162 (1165)
|++++|.
T Consensus 258 L~L~~n~ 264 (362)
T 3goz_A 258 VYLDYDI 264 (362)
T ss_dssp EEEEHHH
T ss_pred EEeccCC
Confidence 9999884
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.36 E-value=2e-12 Score=129.12 Aligned_cols=130 Identities=12% Similarity=0.038 Sum_probs=99.9
Q ss_pred cEEEEcCCCCchhhhhhcccCccceeeeecccccccCCc-ccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecC
Q 038861 965 KYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPA-GLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYC 1043 (1165)
Q Consensus 965 ~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 1043 (1165)
+.++++++.+ +.+|..+. .++++|++++|.+.+..+. .+..+++|++|+|++|.+.+..|..+..+++|++|+|++|
T Consensus 11 ~~l~~s~~~l-~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCC-SSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCc-CcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 5677777754 44554332 4788888888887666554 4778888888888888888877888888888888888888
Q ss_pred CCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceEEEecCCCCCcc
Q 038861 1044 ENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESLEVHDLKISKPL 1096 (1165)
Q Consensus 1044 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~~ 1096 (1165)
.+.+..+..|.++++|++|++++|++.+..|.. ..+++|+.|++++|++.+..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 888877777888888888888888887766665 67788888888888887544
No 127
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.34 E-value=1.8e-11 Score=138.70 Aligned_cols=293 Identities=12% Similarity=0.052 Sum_probs=177.3
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhcc-CCceEEEEEcCCCCHHHHHHHHHHh
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRH-FEIKAWTFVSEDFDVFRVTKSILMS 79 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~w~~~~~~~~~~~~~~~i~~~ 79 (1165)
+||+++++++.+++........+..+.+.|+|++|+||||+|++++.. .... -...+|+.+....+...+...++..
T Consensus 20 ~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 97 (389)
T 1fnn_A 20 PHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEIARS 97 (389)
T ss_dssp TTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHHHHH
Confidence 699999999999986521101122348999999999999999999853 3222 1345677777777888899998888
Q ss_pred ccCCCC-CCCCHHHHHHHHHHHhc--CceEEEEEeCCCCCCccchhhhhcccCCCC----CCcEEEEecCchHHHHhhc-
Q 038861 80 ISNVTV-NDNDLNSLQEKLEKELI--KKKFLLVLDDMWNENYNDWELLNRPFKAGT----SGSKIIVTTRNRVVAERVG- 151 (1165)
Q Consensus 80 l~~~~~-~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~----~~~~iiiTtR~~~~~~~~~- 151 (1165)
++.... ...........+.+.+. +++.+||+|+++..+......+...+.... .+..||++|+.......+.
T Consensus 98 l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~ 177 (389)
T 1fnn_A 98 LNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDP 177 (389)
T ss_dssp TTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCH
T ss_pred hCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCH
Confidence 865332 22345566666665553 568999999997764444455544443211 4677888877654332221
Q ss_pred ------ccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHc---------CCCchHHHHHHhhhc----
Q 038861 152 ------SVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKC---------KGLPLAAKTLGGLLR---- 212 (1165)
Q Consensus 152 ------~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~Plal~~~~~~l~---- 212 (1165)
....+.+++++.++..+++...+..... ...-..+..+.+++.+ +|.|..+..+.....
T Consensus 178 ~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~ 255 (389)
T 1fnn_A 178 STRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA--EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQ 255 (389)
T ss_dssp HHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC--TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC--CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHH
Confidence 1236999999999999999877532100 0111236778899999 788754443332211
Q ss_pred --CCC--ChhHHHHHHhccccccCCCCCChhHHHHhccccCcHHHHhHhhhhcCCC---CCCccChHHHHHHHHH----c
Q 038861 213 --GKH--DPKDWEIVLNADVWDFADDGCDIIPALKVSYRFLPPQLKQCFAYCSLFP---KDYEFEEEEIILLWTA----E 281 (1165)
Q Consensus 213 --~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~la~f~---~~~~i~~~~l~~~w~~----~ 281 (1165)
+.. +.+.......... ...+.-.+..|+++.+.++..++.+. .+..+....+...+.. .
T Consensus 256 ~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 325 (389)
T 1fnn_A 256 QNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEY 325 (389)
T ss_dssp HTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHT
T ss_pred HhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHc
Confidence 111 1222222222110 01123346678888888888887653 2224555555544332 1
Q ss_pred CCcccccCcccHHHHHHHHHHHHHHcCccccc
Q 038861 282 GFLDQECDGRKMEELGREFVRELHSRSLFHQS 313 (1165)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~l~~L~~~~li~~~ 313 (1165)
|... ........++++|.++++|...
T Consensus 326 ~~~~------~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 326 GERP------RVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp TCCC------CCHHHHHHHHHHHHHTTSSEEE
T ss_pred CCCC------CCHHHHHHHHHHHHhCCCeEEe
Confidence 2111 1134577889999999999874
No 128
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.34 E-value=4.1e-12 Score=133.99 Aligned_cols=145 Identities=22% Similarity=0.184 Sum_probs=118.1
Q ss_pred CCccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEee
Q 038861 962 QALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIG 1041 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 1041 (1165)
++|+.|++++|.+. .++.....++|++|++++|.+.+..+ +..+++|++|++++|.+.+. |. +.. ++|+.|+++
T Consensus 41 ~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l-~~-~~~-~~L~~L~L~ 114 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQ-SLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNL-NG-IPS-ACLSRLFLD 114 (263)
T ss_dssp TTCSEEECTTSCCC-CCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCC-TT-CCC-SSCCEEECC
T ss_pred CcCcEEECcCCCcc-cchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCc-Cc-ccc-CcccEEEcc
Confidence 56999999999654 45644445999999999999876544 89999999999999997664 33 223 899999999
Q ss_pred cCCCCCcCCcccCCCCCCceeeeccCCCCcccCCCCCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCCCC
Q 038861 1042 YCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPEDGFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCPV 1118 (1165)
Q Consensus 1042 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 1118 (1165)
+|.+.+. + .+..+++|+.|++++|++.+ ++....+++|+.|++++|++.+. ..+..+++|+.|++++|...
T Consensus 115 ~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~-~~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 115 NNELRDT-D-SLIHLKNLEILSIRNNKLKS-IVMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp SSCCSBS-G-GGTTCTTCCEEECTTSCCCB-CGGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEEEE
T ss_pred CCccCCC-h-hhcCcccccEEECCCCcCCC-ChHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCccc
Confidence 9998774 3 58999999999999999844 45457889999999999999875 34889999999999987544
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.34 E-value=5.8e-13 Score=127.16 Aligned_cols=127 Identities=15% Similarity=0.045 Sum_probs=100.2
Q ss_pred Cccceeeeeccccc-ccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceee
Q 038861 985 TSLEVIAISYLENL-KSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLE 1063 (1165)
Q Consensus 985 ~~L~~L~L~~n~~~-~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 1063 (1165)
++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 56777777777776 57788888899999999999987665 6788889999999999998887888778899999999
Q ss_pred eccCCCCcc-cCCC-CCCCCcceEEEecCCCCCccc--ccccccCCCCcEEEEe
Q 038861 1064 IGWCRSLVS-FPED-GFPTNLESLEVHDLKISKPLF--EWGLNKFSSLRELQIT 1113 (1165)
Q Consensus 1064 l~~n~~~~~-~p~~-~~~~~L~~L~l~~n~~~~~~~--~~~~~~l~~L~~L~l~ 1113 (1165)
+++|++.+. .+.. ..+++|+.|++++|++.+..+ ...+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 999988543 1233 778899999999998876432 1357788888888775
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.33 E-value=4.4e-12 Score=126.60 Aligned_cols=126 Identities=16% Similarity=0.054 Sum_probs=109.0
Q ss_pred ceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccC-CCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeecc
Q 038861 988 EVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPE-GGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGW 1066 (1165)
Q Consensus 988 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 1066 (1165)
+.+++++|.+ +.+|..+.. +|++|++++|.+.+..+. .+..+++|++|+|++|.+.+..|..|.++++|++|++++
T Consensus 11 ~~l~~s~~~l-~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCC-SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCc-CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 6889999988 567776543 999999999998777665 488999999999999999998899999999999999999
Q ss_pred CCCCcccCCC-CCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecCCC
Q 038861 1067 CRSLVSFPED-GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGCP 1117 (1165)
Q Consensus 1067 n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 1117 (1165)
|++.+..+.. ..+++|+.|++++|++.+..+ ..|..+++|++|++++|..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECTTCCB
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCH-HHhhcCCCCCEEEeCCCCc
Confidence 9997776664 789999999999999987554 4589999999999998854
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.32 E-value=1.5e-12 Score=127.20 Aligned_cols=135 Identities=15% Similarity=0.153 Sum_probs=114.1
Q ss_pred CCCCCCCccEEEEcCCCCc-hhhhhhccc-CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCC
Q 038861 957 NGNLPQALKYLEVSYCSKL-ESLAERLDN-TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTK 1034 (1165)
Q Consensus 957 ~~~~~~~L~~L~l~~~~~~-~~~~~~~~~-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 1034 (1165)
....|++|+.|++++|.+. +.+|..+.. ++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++
T Consensus 19 ~~~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 96 (168)
T 2ell_A 19 RNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96 (168)
T ss_dssp TTSCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred ccCCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence 3456688999999999876 567766444 9999999999998765 78899999999999999988877777777999
Q ss_pred cCeEEeecCCCCCcC-CcccCCCCCCceeeeccCCCCcccCC----C-CCCCCcceEEEecCCCCC
Q 038861 1035 LTKLTIGYCENLKAL-PNCMHNLTSLLHLEIGWCRSLVSFPE----D-GFPTNLESLEVHDLKISK 1094 (1165)
Q Consensus 1035 L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~p~----~-~~~~~L~~L~l~~n~~~~ 1094 (1165)
|+.|++++|.+.... +..+..+++|+.|++++|++.+ +|. . ..+++|+.|++++|.+..
T Consensus 97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCChhh
Confidence 999999999987743 2679999999999999999954 444 3 789999999999999865
No 132
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.31 E-value=1.3e-11 Score=140.08 Aligned_cols=301 Identities=15% Similarity=0.070 Sum_probs=173.9
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhcc---CCceEEEEEcCCCCHHHHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRH---FEIKAWTFVSEDFDVFRVTKSIL 77 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~---f~~~~w~~~~~~~~~~~~~~~i~ 77 (1165)
+||+++++.+.+++..... ....+.+.|+|++|+||||||++++.. .... -...+|+.+....+...+...++
T Consensus 23 ~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 23 PHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp TTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 6999999999998864211 123457999999999999999999853 3333 23456777766667778888888
Q ss_pred HhccCCCC-CCCCHHHHHHHHHHHhc--CceEEEEEeCCCCCC----ccchhhhhcccCC-CCCCcEEEEecCchHHHHh
Q 038861 78 MSISNVTV-NDNDLNSLQEKLEKELI--KKKFLLVLDDMWNEN----YNDWELLNRPFKA-GTSGSKIIVTTRNRVVAER 149 (1165)
Q Consensus 78 ~~l~~~~~-~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~----~~~~~~l~~~~~~-~~~~~~iiiTtR~~~~~~~ 149 (1165)
..++.... ...+..+....+.+.+. +++.+||+|+++... ...+..+...+.. ...+..+|+||+.......
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 99 ESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp TTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 77754322 22335555666666654 458999999995421 1223333222211 2345667777776532211
Q ss_pred hc-------ccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcC---CCchHH-HHHHhhhc-----C
Q 038861 150 VG-------SVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCK---GLPLAA-KTLGGLLR-----G 213 (1165)
Q Consensus 150 ~~-------~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Plal-~~~~~~l~-----~ 213 (1165)
+. ....+++++++.++..+++...+.... ....-..++.+.+++.++ |.|..+ .++..... +
T Consensus 179 ~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~ 256 (386)
T 2qby_A 179 LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF--KPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMK 256 (386)
T ss_dssp CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB--CSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc--cCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Confidence 11 114799999999999999987542110 011112366777888887 998844 33322211 1
Q ss_pred --CCChhHHHHHHhccccccCCCCCChhHHHHhccccCcHHHHhHhhhhcCCCC-C-CccChHHHHHHH----HHcCCcc
Q 038861 214 --KHDPKDWEIVLNADVWDFADDGCDIIPALKVSYRFLPPQLKQCFAYCSLFPK-D-YEFEEEEIILLW----TAEGFLD 285 (1165)
Q Consensus 214 --~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~la~f~~-~-~~i~~~~l~~~w----~~~~~~~ 285 (1165)
.-+.+.+..+.... ....+.-++..+++.++.++..++.+.+ + ..+....+...+ -..|. .
T Consensus 257 ~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~-~ 325 (386)
T 2qby_A 257 DTKVKEEYVYMAKEEI----------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGV-E 325 (386)
T ss_dssp CSSCCHHHHHHHHHHH----------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTC-C
T ss_pred CCccCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCC-C
Confidence 11233333333321 1234666778899999998888874321 1 223333332211 11121 1
Q ss_pred cccCcccHHHHHHHHHHHHHHcCcccccc---CCCCeEEEe
Q 038861 286 QECDGRKMEELGREFVRELHSRSLFHQSS---KDASRFVMH 323 (1165)
Q Consensus 286 ~~~~~~~~~~~~~~~l~~L~~~~li~~~~---~~~~~~~~H 323 (1165)
+ ........+++.|.+.++++... +..++|..+
T Consensus 326 ~-----~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~y~~~ 361 (386)
T 2qby_A 326 A-----VTQRRVSDIINELDMVGILTAKVVNRGRYGKTKEI 361 (386)
T ss_dssp C-----CCHHHHHHHHHHHHHHTSEEEEECCCTTSCCCEEE
T ss_pred C-----CCHHHHHHHHHHHHhCCCEEEEeecCCCCCCeEEE
Confidence 1 11244677899999999997632 234456554
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.27 E-value=3.3e-12 Score=121.87 Aligned_cols=128 Identities=17% Similarity=0.035 Sum_probs=99.6
Q ss_pred CCCCCEEEEeCCCCC-ccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceE
Q 038861 1008 LHHLQELKVYGCPNL-ESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESL 1085 (1165)
Q Consensus 1008 l~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L 1085 (1165)
.++|++|++++|.+. +.+|..+..+++|+.|++++|.+... ..+.++++|++|++++|.+.+.+|.. ..+++|+.|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 478999999999977 67888888899999999999988775 66888999999999999986656655 558899999
Q ss_pred EEecCCCCCcccccccccCCCCcEEEEecCCCCcccCCCCCCcccEEEecCCCCcccHH----HhhhcCCccceEeecC
Q 038861 1086 EVHDLKISKPLFEWGLNKFSSLRELQITGGCPVLLSSPWFPASLTVLHISYMPNLESLS----LIVENLTSLEILILCK 1160 (1165)
Q Consensus 1086 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~l~~l~----~~~~~l~~L~~L~l~~ 1160 (1165)
++++|++.+......+..+++|++|++++|.. ..++ ..+..+++|++|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l-----------------------~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV-----------------------TNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG-----------------------GGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc-----------------------cchHHHHHHHHHHCCCcccccCCC
Confidence 99999987632224578888888888887532 2222 3567788888888764
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.26 E-value=1.6e-11 Score=122.37 Aligned_cols=127 Identities=15% Similarity=0.051 Sum_probs=91.1
Q ss_pred cEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCC
Q 038861 965 KYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCE 1044 (1165)
Q Consensus 965 ~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 1044 (1165)
+.++++++.+ +.+|..+ .++|++|++++|.+. .+|..+.++++|++|+|++|.+.+..+..|..+++|++|+|++|.
T Consensus 13 ~~l~~~~~~l-~~ip~~~-~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGL-KVLPKGI-PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCC-SSCCSCC-CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCC-CcCCCCC-CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4566666643 3344322 257777777777774 566778888888888888888777777778888888888888888
Q ss_pred CCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceEEEecCCCCC
Q 038861 1045 NLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESLEVHDLKISK 1094 (1165)
Q Consensus 1045 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~ 1094 (1165)
+....|..|.++++|+.|+|++|++....+.. ..+++|+.|++++|++..
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 87777777888888888888888874433332 567788888888887653
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.25 E-value=4.3e-14 Score=165.83 Aligned_cols=37 Identities=27% Similarity=0.079 Sum_probs=26.4
Q ss_pred cccCCcCceEecCCCCccccchhhcCCCCcceEEEcCC
Q 038861 765 LSLVTEDDLELSNCKGLTKLPQALLTLSSLRELRISGC 802 (1165)
Q Consensus 765 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 802 (1165)
...+.|+.|++++|.+ +.+|..++.+++|+.|++++|
T Consensus 346 ~~~~~L~~L~Ls~n~L-~~Lp~~i~~l~~L~~L~l~~n 382 (567)
T 1dce_A 346 ATDEQLFRCELSVEKS-TVLQSELESCKELQELEPENK 382 (567)
T ss_dssp STTTTSSSCCCCHHHH-HHHHHHHHHHHHHHHHCTTCH
T ss_pred ccCccceeccCChhhH-HhhHHHHHHHHHHHHhccccc
Confidence 3456777788888765 467777888888888777554
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.25 E-value=4.1e-14 Score=165.98 Aligned_cols=103 Identities=16% Similarity=0.030 Sum_probs=48.7
Q ss_pred cceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeecc
Q 038861 987 LEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGW 1066 (1165)
Q Consensus 987 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 1066 (1165)
|+.|++++|.+.+ +|. +..+++|++|+|++|.+. .+|..+..+++|+.|+|++|.+.+ +| .+.++++|+.|+|++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 4445555554433 333 444555555555555433 344444455555555555554443 33 445555555555555
Q ss_pred CCCCccc-CCC-CCCCCcceEEEecCCCCC
Q 038861 1067 CRSLVSF-PED-GFPTNLESLEVHDLKISK 1094 (1165)
Q Consensus 1067 n~~~~~~-p~~-~~~~~L~~L~l~~n~~~~ 1094 (1165)
|++.+.. |.. ..+++|+.|++++|++.+
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 5543332 332 444455555555555443
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.24 E-value=3.3e-11 Score=118.77 Aligned_cols=130 Identities=13% Similarity=-0.056 Sum_probs=86.2
Q ss_pred ccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecC
Q 038861 964 LKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYC 1043 (1165)
Q Consensus 964 L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 1043 (1165)
.+.++++++.. ..+|... .++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l-~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGL-TSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCC-SSCCTTC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCC-ccCCCCC-CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 35566666543 2333221 256777777777776655566677777788887777766665566677777777777777
Q ss_pred CCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceEEEecCCCCCc
Q 038861 1044 ENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESLEVHDLKISKP 1095 (1165)
Q Consensus 1044 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~ 1095 (1165)
.+.+..+..|..+++|+.|++++|.+.+..+.. ..+++|+.|++++|++.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 777666666777777777777777774333332 5567777777777777653
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.24 E-value=1.1e-12 Score=159.42 Aligned_cols=107 Identities=18% Similarity=0.157 Sum_probs=55.5
Q ss_pred CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeee
Q 038861 985 TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEI 1064 (1165)
Q Consensus 985 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 1064 (1165)
++|+.|+|++|.+. .+|..+..+++|++|+|++|.+. .+|..+..+++|+.|+|++|.+. .+|..|.++++|++|+|
T Consensus 224 ~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 224 QLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF 300 (727)
T ss_dssp CCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEEC
T ss_pred CCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEEC
Confidence 55555555555543 34444445555555555555544 44444555555555555555544 34555555555555555
Q ss_pred ccCCCCcccCCC-CCCCCcceEEEecCCCCCc
Q 038861 1065 GWCRSLVSFPED-GFPTNLESLEVHDLKISKP 1095 (1165)
Q Consensus 1065 ~~n~~~~~~p~~-~~~~~L~~L~l~~n~~~~~ 1095 (1165)
++|.+ +.+|.. +.+++|+.|+|++|++.+.
T Consensus 301 ~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 301 FDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp CSSCC-CCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred CCCCC-CccChhhhcCCCccEEeCCCCccCCC
Confidence 55554 344443 4455555555555555543
No 139
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.22 E-value=7.8e-11 Score=124.27 Aligned_cols=194 Identities=14% Similarity=0.088 Sum_probs=115.7
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
+||+++++.+..++.... ..+.+.|+|++|+||||+|+++++.. ...+.... ........ ...+....
T Consensus 26 ~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~--~~~~~~~~----~~~~~~~~-~~~~~~~~ 93 (250)
T 1njg_A 26 VGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGL--NCETGITA----TPCGVCDN-CREIEQGR 93 (250)
T ss_dssp CSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHH--HCTTCSCS----SCCSCSHH-HHHHHTTC
T ss_pred hCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHh--cCCCCCCC----CCCcccHH-HHHHhccC
Confidence 699999999999997543 13478999999999999999998532 21111000 00000000 00111000
Q ss_pred cC-----CCCCCCCHHHHHHHHHHHh-----cCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCchH-HHHh
Q 038861 81 SN-----VTVNDNDLNSLQEKLEKEL-----IKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRV-VAER 149 (1165)
Q Consensus 81 ~~-----~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~-~~~~ 149 (1165)
.. ........+. ...+.+.+ .+++.+||+||++......+..+...+.....+.++|+||+... +...
T Consensus 94 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~ 172 (250)
T 1njg_A 94 FVDLIEIDAASRTKVED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 172 (250)
T ss_dssp CSSEEEEETTCGGGHHH-HHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHH
T ss_pred CcceEEecCcccccHHH-HHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHH
Confidence 00 0000011111 11122221 34679999999977655556666665555556788888887643 1111
Q ss_pred -hcccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHhhh
Q 038861 150 -VGSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLGGLL 211 (1165)
Q Consensus 150 -~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 211 (1165)
......+++++++.+|..+++...+..... .-..+..+.|++.|+|.|..+..+...+
T Consensus 173 l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 173 ILSRCLQFHLKALDVEQIRHQLEHILNEEHI----AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHTTC----CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhhccCCCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 123467999999999999999877543221 1123677889999999999988776544
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.21 E-value=4.7e-11 Score=118.93 Aligned_cols=112 Identities=17% Similarity=0.073 Sum_probs=100.0
Q ss_pred CCCCCCccEEEEcCCCCchhhhhhccc-CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcC
Q 038861 958 GNLPQALKYLEVSYCSKLESLAERLDN-TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLT 1036 (1165)
Q Consensus 958 ~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 1036 (1165)
..+|++|+.|++++|.+. .+|..+.. ++|++|++++|.+.+..+..|.++++|++|+|++|.+.+..+..+..+++|+
T Consensus 27 ~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~ 105 (193)
T 2wfh_A 27 KGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105 (193)
T ss_dssp SCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred CCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCC
Confidence 346678999999999765 56555554 9999999999999988888999999999999999999988888999999999
Q ss_pred eEEeecCCCCCcCCcccCCCCCCceeeeccCCCC
Q 038861 1037 KLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSL 1070 (1165)
Q Consensus 1037 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 1070 (1165)
.|+|++|.+....+..|..+++|+.|++++|++.
T Consensus 106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 9999999998877778999999999999999984
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.19 E-value=6.9e-11 Score=116.44 Aligned_cols=117 Identities=16% Similarity=0.014 Sum_probs=100.1
Q ss_pred CCCCCCccEEEEcCCCCchhhhhhccc-CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcC
Q 038861 958 GNLPQALKYLEVSYCSKLESLAERLDN-TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLT 1036 (1165)
Q Consensus 958 ~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 1036 (1165)
..++++|+.|++++|.+.+..+..+.. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 24 ~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 103 (177)
T 2o6r_A 24 TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLK 103 (177)
T ss_dssp TTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccC
Confidence 345578999999999876555555444 9999999999999877777789999999999999998887777788999999
Q ss_pred eEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccC
Q 038861 1037 KLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFP 1074 (1165)
Q Consensus 1037 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p 1074 (1165)
+|++++|.+.+..+..|..+++|+.|++++|++.+..|
T Consensus 104 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 104 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred EEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99999999987777678999999999999999866544
No 142
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.17 E-value=1.5e-11 Score=121.04 Aligned_cols=126 Identities=10% Similarity=0.002 Sum_probs=72.1
Q ss_pred CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeee
Q 038861 985 TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEI 1064 (1165)
Q Consensus 985 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 1064 (1165)
.+|+.|++++|.+.. +|......++|++|++++|.+.+. ..+..+++|+.|++++|.+....+..|..+++|++|++
T Consensus 19 ~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 19 VRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp TSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 455555555555542 333222233666666666665543 45666666677777766665544444466667777777
Q ss_pred ccCCCCcccCC--C-CCCCCcceEEEecCCCCCccccc---ccccCCCCcEEEEecC
Q 038861 1065 GWCRSLVSFPE--D-GFPTNLESLEVHDLKISKPLFEW---GLNKFSSLRELQITGG 1115 (1165)
Q Consensus 1065 ~~n~~~~~~p~--~-~~~~~L~~L~l~~n~~~~~~~~~---~~~~l~~L~~L~l~~n 1115 (1165)
++|++ +.+|. . ..+++|+.|++++|++.. ++.. .+..+++|+.|++++|
T Consensus 96 ~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 96 TNNSL-VELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCcC-CcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcC
Confidence 76666 44443 2 456666666666666653 2221 2556666666666654
No 143
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.16 E-value=4.9e-12 Score=153.60 Aligned_cols=144 Identities=19% Similarity=0.064 Sum_probs=100.0
Q ss_pred CCccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEee
Q 038861 962 QALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIG 1041 (1165)
Q Consensus 962 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 1041 (1165)
..|+.|++++|.+....+..+..++|++|+|++|.+. .+|..|.++++|++|+|++|.+. .+|..+..+++|++|+|+
T Consensus 224 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~ 301 (727)
T 4b8c_D 224 QLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFF 301 (727)
T ss_dssp CCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECC
T ss_pred CCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECC
Confidence 5688888888876533334444588999999998886 77888888899999999998866 668888888899999999
Q ss_pred cCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCC-CCcceEEEecCCCCCcccccccccCCCCcEEEEecC
Q 038861 1042 YCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFP-TNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGG 1115 (1165)
Q Consensus 1042 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 1115 (1165)
+|.+. .+|..|.++++|+.|+|++|++.+.+|.. ..+ ..+..+++++|.+.+.++. .|+.|++++|
T Consensus 302 ~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-------~l~~l~l~~n 369 (727)
T 4b8c_D 302 DNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-------ERRFIEINTD 369 (727)
T ss_dssp SSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------C---------
T ss_pred CCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc-------ccceeEeecc
Confidence 88875 56777888999999999999887766654 111 1222356777777665432 3555555544
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.13 E-value=1.9e-10 Score=126.23 Aligned_cols=100 Identities=13% Similarity=-0.073 Sum_probs=70.2
Q ss_pred CCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCc-eeeeccCCCCcccCCC--CCCCCcce
Q 038861 1008 LHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLL-HLEIGWCRSLVSFPED--GFPTNLES 1084 (1165)
Q Consensus 1008 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~p~~--~~~~~L~~ 1084 (1165)
+++|++|+|++|.+....+.+|.++++|+.|++.+| +....+..|.++++|+ .+++.+ .+ ..++.. ..+++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l-~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SV-TAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TC-CEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cc-eEEchhhhhCCccCCE
Confidence 567777777777766666667777777888877776 5555566777777887 777776 44 444433 66777888
Q ss_pred EEEecCCCCCcccccccccCCCCcEEE
Q 038861 1085 LEVHDLKISKPLFEWGLNKFSSLRELQ 1111 (1165)
Q Consensus 1085 L~l~~n~~~~~~~~~~~~~l~~L~~L~ 1111 (1165)
|++++|++.. +....|.++++|+.++
T Consensus 302 l~l~~n~i~~-I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATGDKITT-LGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECSSCCCE-ECTTTTCTTCCCCEEE
T ss_pred EEeCCCccCc-cchhhhcCCcchhhhc
Confidence 8887777764 4455588888888775
No 145
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.12 E-value=4.4e-10 Score=116.27 Aligned_cols=183 Identities=13% Similarity=0.027 Sum_probs=112.1
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCC-ceEEEEEcCCCCHHHHHHHHHHh
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFE-IKAWTFVSEDFDVFRVTKSILMS 79 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~w~~~~~~~~~~~~~~~i~~~ 79 (1165)
+||++.++.+.+++.... .+.+.|+|++|+|||++|+++++... ...+. ..+.+......+...+...+...
T Consensus 20 ~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (226)
T 2chg_A 20 VGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKIKEF 92 (226)
T ss_dssp CSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHHHHH
Confidence 699999999999996542 22389999999999999999985321 11121 12233332222222222111111
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCchHH-HHh-hcccceee
Q 038861 80 ISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRVV-AER-VGSVREYP 157 (1165)
Q Consensus 80 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~~-~~~-~~~~~~~~ 157 (1165)
..... .-.+++.+||+||++.........+...+.....+.++|+||+.... ... ......++
T Consensus 93 ~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~ 157 (226)
T 2chg_A 93 ARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFR 157 (226)
T ss_dssp HTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred hcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceee
Confidence 10000 01256889999999776554555555555444567888888876531 111 12234789
Q ss_pred CCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHh
Q 038861 158 LGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLGG 209 (1165)
Q Consensus 158 l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 209 (1165)
+.+++.++..+++...+..... . -..+..+.+++.++|.|..+..+..
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~-~---~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 158 FKPVPKEAMKKRLLEICEKEGV-K---ITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTC-C---BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999999876532221 1 1236778899999999986555433
No 146
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.12 E-value=3.1e-11 Score=118.65 Aligned_cols=129 Identities=16% Similarity=0.033 Sum_probs=106.5
Q ss_pred CCCccEEEEcCCCCchhhhhhccc-CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEE
Q 038861 961 PQALKYLEVSYCSKLESLAERLDN-TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLT 1039 (1165)
Q Consensus 961 ~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 1039 (1165)
+.+|+.|++++|.+. .++..... ++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 18 ~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 18 AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred cCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 367999999999765 45554444 5999999999999775 6789999999999999997765444458899999999
Q ss_pred eecCCCCCcCCc--ccCCCCCCceeeeccCCCCcccCC-----CCCCCCcceEEEecCCCCC
Q 038861 1040 IGYCENLKALPN--CMHNLTSLLHLEIGWCRSLVSFPE-----DGFPTNLESLEVHDLKISK 1094 (1165)
Q Consensus 1040 L~~n~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~p~-----~~~~~~L~~L~l~~n~~~~ 1094 (1165)
+++|.+.. +|. .+..+++|+.|++++|++. .+|. ...+++|+.|++++|....
T Consensus 95 L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 95 LTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 99999854 555 7899999999999999994 5555 3678999999999998764
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.08 E-value=7.8e-10 Score=121.37 Aligned_cols=99 Identities=9% Similarity=-0.087 Sum_probs=76.0
Q ss_pred CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcC-eEEeecCCCCCcCCcccCCCCCCceee
Q 038861 985 TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLT-KLTIGYCENLKALPNCMHNLTSLLHLE 1063 (1165)
Q Consensus 985 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~-~L~L~~n~~~~~~~~~~~~l~~L~~L~ 1063 (1165)
++|+.+++++|.+....+..|.++++|++|++.+| +....+.+|.++++|+ .+++.+ .+....+..|.++++|+.++
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence 77888888887776666677888888888888887 5556666888888888 888887 66666667888888888888
Q ss_pred eccCCCCcccCCC--CCCCCcceEE
Q 038861 1064 IGWCRSLVSFPED--GFPTNLESLE 1086 (1165)
Q Consensus 1064 l~~n~~~~~~p~~--~~~~~L~~L~ 1086 (1165)
+++|.+ ..++.. ..+++|+.++
T Consensus 304 l~~n~i-~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 304 ATGDKI-TTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECSSCC-CEECTTTTCTTCCCCEEE
T ss_pred eCCCcc-CccchhhhcCCcchhhhc
Confidence 888887 444443 6677888775
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.06 E-value=3.3e-10 Score=110.11 Aligned_cols=85 Identities=15% Similarity=-0.004 Sum_probs=44.6
Q ss_pred CCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceEEE
Q 038861 1009 HHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESLEV 1087 (1165)
Q Consensus 1009 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l 1087 (1165)
++|++|+|++|.+.+..|..+..+++|++|+|++|.+.+..+..|.++++|++|+|++|++.+..+.. ..+++|+.|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 45555555555555555555555555555555555555444444555555555555555553332222 44555555555
Q ss_pred ecCCCC
Q 038861 1088 HDLKIS 1093 (1165)
Q Consensus 1088 ~~n~~~ 1093 (1165)
++|++.
T Consensus 110 ~~N~~~ 115 (170)
T 3g39_A 110 LNNPWD 115 (170)
T ss_dssp CSSCBC
T ss_pred CCCCCC
Confidence 555554
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.05 E-value=6.1e-10 Score=108.22 Aligned_cols=106 Identities=18% Similarity=0.008 Sum_probs=83.9
Q ss_pred ccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecC
Q 038861 964 LKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYC 1043 (1165)
Q Consensus 964 L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 1043 (1165)
.+.+++++|.+. .+|..+ .++|++|+|++|.+.+..|..|.++++|++|+|++|.+.+..+..|..+++|+.|+|++|
T Consensus 11 ~~~l~~s~n~l~-~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcC-ccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 567888887543 455433 278888888888888877888888888888888888877777777788888888888888
Q ss_pred CCCCcCCcccCCCCCCceeeeccCCCCc
Q 038861 1044 ENLKALPNCMHNLTSLLHLEIGWCRSLV 1071 (1165)
Q Consensus 1044 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 1071 (1165)
.+.+..+..|.++++|+.|++++|++..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 8877766678888888888888888743
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.04 E-value=5.2e-10 Score=109.03 Aligned_cols=85 Identities=12% Similarity=-0.063 Sum_probs=41.4
Q ss_pred CCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC-CCCCCcceEEE
Q 038861 1009 HHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED-GFPTNLESLEV 1087 (1165)
Q Consensus 1009 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~L~l 1087 (1165)
++|++|+|++|.+.+..|..+..+++|++|+|++|.+.+..+..|.++++|+.|+|++|++.+..+.. ..+++|+.|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 44555555555544444444555555555555555544443334455555555555555553222221 34455555555
Q ss_pred ecCCCC
Q 038861 1088 HDLKIS 1093 (1165)
Q Consensus 1088 ~~n~~~ 1093 (1165)
++|++.
T Consensus 113 ~~N~~~ 118 (174)
T 2r9u_A 113 YNNPWD 118 (174)
T ss_dssp CSSCBC
T ss_pred CCCCcc
Confidence 555544
No 151
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.03 E-value=3.5e-12 Score=128.29 Aligned_cols=127 Identities=17% Similarity=0.071 Sum_probs=88.8
Q ss_pred CccceeeeecccccccCCc------ccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCC
Q 038861 985 TSLEVIAISYLENLKSLPA------GLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTS 1058 (1165)
Q Consensus 985 ~~L~~L~L~~n~~~~~~p~------~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 1058 (1165)
..++.++++.+.+.+..|. .+..+++|++|++++|.+.+ +| .+..+++|+.|++++|.+. .+|..+..+++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 6677777777777766665 67778888888888887555 45 6777778888888888765 45666666778
Q ss_pred CceeeeccCCCCcccCCCCCCCCcceEEEecCCCCCcccccccccCCCCcEEEEecC
Q 038861 1059 LLHLEIGWCRSLVSFPEDGFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGG 1115 (1165)
Q Consensus 1059 L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 1115 (1165)
|+.|++++|++.+ +|....+++|+.|++++|++.+......+..+++|++|++++|
T Consensus 95 L~~L~L~~N~l~~-l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 95 LEELWISYNQIAS-LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp CSEEEEEEEECCC-HHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred CCEEECcCCcCCc-CCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 8888888887743 4533566778888888887765322134667777777777765
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.03 E-value=8.8e-10 Score=107.40 Aligned_cols=105 Identities=16% Similarity=0.011 Sum_probs=83.6
Q ss_pred ccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecC
Q 038861 964 LKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYC 1043 (1165)
Q Consensus 964 L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 1043 (1165)
-+.+++++|.+ +.+|..+. ++|++|+|++|.+.+..|..|.++++|++|+|++|.+.+..+..+..+++|+.|+|++|
T Consensus 14 ~~~l~~~~n~l-~~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRL-ASVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCC-SSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCC-CccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 36788888754 55555433 78888999998888887888888888999999988877766666788888999999888
Q ss_pred CCCCcCCcccCCCCCCceeeeccCCCC
Q 038861 1044 ENLKALPNCMHNLTSLLHLEIGWCRSL 1070 (1165)
Q Consensus 1044 ~~~~~~~~~~~~l~~L~~L~l~~n~~~ 1070 (1165)
.+....+..|..+++|+.|++++|++.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 887766666888888999999888874
No 153
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.94 E-value=1.3e-09 Score=119.70 Aligned_cols=179 Identities=16% Similarity=0.093 Sum_probs=104.1
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
||++..++.+..++..... .......|.|+|++|+|||++|+++++. ... ..+++..........+.
T Consensus 15 ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~---~~~~~~~~~~~~~~~l~------- 81 (324)
T 1hqc_A 15 IGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGV---NLRVTSGPAIEKPGDLA------- 81 (324)
T ss_dssp CSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHH--HTC---CEEEECTTTCCSHHHHH-------
T ss_pred hCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeccccCChHHHH-------
Confidence 6999999998888753110 0112346899999999999999999852 221 22334332222221111
Q ss_pred cCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCccchhhhhcccCCC------------------CCCcEEEEecC
Q 038861 81 SNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENYNDWELLNRPFKAG------------------TSGSKIIVTTR 142 (1165)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~------------------~~~~~iiiTtR 142 (1165)
..+...+ .++.+|++|+++.........+...+... .++.++|.||.
T Consensus 82 --------------~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~ 146 (324)
T 1hqc_A 82 --------------AILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATT 146 (324)
T ss_dssp --------------HHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEES
T ss_pred --------------HHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCC
Confidence 1111111 24568899999765433333332221111 12456666665
Q ss_pred chH-HHHhh-cc-cceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHhhh
Q 038861 143 NRV-VAERV-GS-VREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLGGLL 211 (1165)
Q Consensus 143 ~~~-~~~~~-~~-~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 211 (1165)
... +...+ .. ...+++.+++.+|..+++...+..... . -..+....++++++|.|-.+..+...+
T Consensus 147 ~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~-~---~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 147 RPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV-R---ITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp CCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC-C---CCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred CcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC-C---CCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 432 11111 11 257899999999999998877543221 1 123678889999999998887766554
No 154
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.89 E-value=3.7e-09 Score=116.13 Aligned_cols=177 Identities=18% Similarity=0.187 Sum_probs=109.8
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCC-ceEEEEEcCCCCHHHHHHHHHHh
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFE-IKAWTFVSEDFDVFRVTKSILMS 79 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~w~~~~~~~~~~~~~~~i~~~ 79 (1165)
+||++.++.+.+++.... .+.+.|+|++|+||||+|+.+++... ...+. ..+++......+.
T Consensus 24 ~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~---------- 86 (323)
T 1sxj_B 24 VGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGI---------- 86 (323)
T ss_dssp CSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSH----------
T ss_pred HCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccCh----------
Confidence 699999999999996542 22389999999999999999985321 11111 1223332222122
Q ss_pred ccCCCCCCCCHHHHHHHHHHHh-------cCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCchH-HHHh-h
Q 038861 80 ISNVTVNDNDLNSLQEKLEKEL-------IKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRV-VAER-V 150 (1165)
Q Consensus 80 l~~~~~~~~~~~~~~~~l~~~l-------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~-~~~~-~ 150 (1165)
+.....+.... .+++.++|+||++......+..+...+.....++++|+||+... +... .
T Consensus 87 -----------~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~ 155 (323)
T 1sxj_B 87 -----------DVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQ 155 (323)
T ss_dssp -----------HHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred -----------HHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHH
Confidence 12212222211 34588999999976554455555555544456788888887643 1111 1
Q ss_pred cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCch-HHHHHHh
Q 038861 151 GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPL-AAKTLGG 209 (1165)
Q Consensus 151 ~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~ 209 (1165)
.....+++.+++.++..+++...+...+. . -..+.+..|++.++|.|. |+..+..
T Consensus 156 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~-~---~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 156 SQCAILRYSKLSDEDVLKRLLQIIKLEDV-K---YTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTC-C---BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhceEEeecCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 23357999999999999999876532111 1 123677889999999995 4454433
No 155
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.88 E-value=5.9e-12 Score=126.63 Aligned_cols=144 Identities=16% Similarity=0.104 Sum_probs=108.7
Q ss_pred CccEEEEcCCC-Cchhhhhhccc-CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEe
Q 038861 963 ALKYLEVSYCS-KLESLAERLDN-TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTI 1040 (1165)
Q Consensus 963 ~L~~L~l~~~~-~~~~~~~~~~~-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L 1040 (1165)
.++.+.++++. ..+.+|..+.. ++|++|++++|.+.+ +| .+..+++|++|++++|.+. .+|..+..+++|+.|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEEC
Confidence 35555555431 23334434443 899999999999866 66 8889999999999999865 56666666789999999
Q ss_pred ecCCCCCcCCcccCCCCCCceeeeccCCCCcccC--CCCCCCCcceEEEecCCCCCcccc---------cccccCCCCcE
Q 038861 1041 GYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFP--EDGFPTNLESLEVHDLKISKPLFE---------WGLNKFSSLRE 1109 (1165)
Q Consensus 1041 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p--~~~~~~~L~~L~l~~n~~~~~~~~---------~~~~~l~~L~~ 1109 (1165)
++|.+.+ +| .+..+++|+.|++++|++....+ ....+++|+.|++++|++.+..+. ..+..+++|+.
T Consensus 101 ~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 178 (198)
T 1ds9_A 101 SYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK 178 (198)
T ss_dssp EEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSE
T ss_pred cCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEE
Confidence 9999876 45 58889999999999999854222 227889999999999998764332 23678899998
Q ss_pred EE
Q 038861 1110 LQ 1111 (1165)
Q Consensus 1110 L~ 1111 (1165)
||
T Consensus 179 Ld 180 (198)
T 1ds9_A 179 LD 180 (198)
T ss_dssp EC
T ss_pred EC
Confidence 87
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.86 E-value=9.2e-08 Score=106.81 Aligned_cols=105 Identities=16% Similarity=0.209 Sum_probs=43.7
Q ss_pred CCCCCCCCcCeEEeecCCCC-----CcCCcccCCCCCCceeeeccCCCCcccCCC--CCCCCcceEEEecCCCCCccccc
Q 038861 1027 EGGLPSTKLTKLTIGYCENL-----KALPNCMHNLTSLLHLEIGWCRSLVSFPED--GFPTNLESLEVHDLKISKPLFEW 1099 (1165)
Q Consensus 1027 ~~~~~l~~L~~L~L~~n~~~-----~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~--~~~~~L~~L~l~~n~~~~~~~~~ 1099 (1165)
.+|.++++|+.+++.+|... ...+..|.++++|+.+++.+ .+ ..++.. ..+.+|+.+.+.++ +. .+...
T Consensus 265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i-~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~ 340 (401)
T 4fdw_A 265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SI-RILGQGLLGGNRKVTQLTIPAN-VT-QINFS 340 (401)
T ss_dssp TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TC-CEECTTTTTTCCSCCEEEECTT-CC-EECTT
T ss_pred hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ce-EEEhhhhhcCCCCccEEEECcc-cc-EEcHH
Confidence 34444444444444443322 12233444444555544442 22 233322 33444555555333 22 22333
Q ss_pred ccccCCCCcEEEEecCCCCcccCCC---CCCcccEEEecC
Q 038861 1100 GLNKFSSLRELQITGGCPVLLSSPW---FPASLTVLHISY 1136 (1165)
Q Consensus 1100 ~~~~l~~L~~L~l~~n~~~~~~~~~---~~~~L~~L~l~~ 1136 (1165)
.|.++ +|+.+++++|.+..+.... ++.+++.|.+-.
T Consensus 341 aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp SSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred hCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence 35555 5555555555444333222 233455555543
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.82 E-value=2.3e-07 Score=103.57 Aligned_cols=147 Identities=12% Similarity=0.076 Sum_probs=107.2
Q ss_pred CccEEEEcCCCCchhhhhhcccCccceeeeecccccccCCcccCCCCCCCEEEEeCCCCC-----ccccCCCCCCCCcCe
Q 038861 963 ALKYLEVSYCSKLESLAERLDNTSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNL-----ESFPEGGLPSTKLTK 1037 (1165)
Q Consensus 963 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~-----~~~~~~~~~l~~L~~ 1037 (1165)
+|+.+++..+ ....-...+...+|+.+.+. +.+...-+..|.++++|+++++.+|... ...+.+|.++++|+.
T Consensus 227 ~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~ 304 (401)
T 4fdw_A 227 QLKTIEIPEN-VSTIGQEAFRESGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLAR 304 (401)
T ss_dssp TCCCEECCTT-CCEECTTTTTTCCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCE
T ss_pred CCCEEecCCC-ccCccccccccCCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCe
Confidence 4666666653 22222334445889999994 4455555778999999999999988654 355678999999999
Q ss_pred EEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC--CCCCCcceEEEecCCCCCcccccccccCC-CCcEEEEec
Q 038861 1038 LTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED--GFPTNLESLEVHDLKISKPLFEWGLNKFS-SLRELQITG 1114 (1165)
Q Consensus 1038 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~L~l~~ 1114 (1165)
++|.+ .+...-...|.++++|+.+.+..+ + ..++.. ..+ +|+.+++.+|.... +....|.+++ ++..|.+..
T Consensus 305 l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l-~~I~~~aF~~~-~L~~l~l~~n~~~~-l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 305 FEIPE-SIRILGQGLLGGNRKVTQLTIPAN-V-TQINFSAFNNT-GIKEVKVEGTTPPQ-VFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp ECCCT-TCCEECTTTTTTCCSCCEEEECTT-C-CEECTTSSSSS-CCCEEEECCSSCCB-CCCSSCCCSCTTCCEEEECG
T ss_pred EEeCC-ceEEEhhhhhcCCCCccEEEECcc-c-cEEcHHhCCCC-CCCEEEEcCCCCcc-cccccccCCCCCccEEEeCH
Confidence 99994 566666778999999999999655 4 455544 556 99999999998765 3455577774 788998876
Q ss_pred CC
Q 038861 1115 GC 1116 (1165)
Q Consensus 1115 n~ 1116 (1165)
+.
T Consensus 380 ~~ 381 (401)
T 4fdw_A 380 ES 381 (401)
T ss_dssp GG
T ss_pred HH
Confidence 53
No 158
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.80 E-value=2.6e-08 Score=105.06 Aligned_cols=168 Identities=14% Similarity=0.054 Sum_probs=100.7
Q ss_pred CchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhc---cCC--ceEEEEEcCCCCHHHHHHHH
Q 038861 2 GRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRR---HFE--IKAWTFVSEDFDVFRVTKSI 76 (1165)
Q Consensus 2 GR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~---~f~--~~~w~~~~~~~~~~~~~~~i 76 (1165)
|||+|+++|...|...- .++....+.|+|++|+|||++|+++++...... ... ..+.+++....+...++..+
T Consensus 24 ~Re~E~~~i~~~L~~~i--~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 24 SQVEDFTRIFLPIYDSL--MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHH--HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 79999999998886532 123456789999999999999999996432211 111 34566666777888999999
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHHh---cCceEEEEEeCCCCCCccchhhhhcccC--CC-CCCcEEEEecCchH-----
Q 038861 77 LMSISNVTVNDNDLNSLQEKLEKEL---IKKKFLLVLDDMWNENYNDWELLNRPFK--AG-TSGSKIIVTTRNRV----- 145 (1165)
Q Consensus 77 ~~~l~~~~~~~~~~~~~~~~l~~~l---~~~~~LlvlDdv~~~~~~~~~~l~~~~~--~~-~~~~~iiiTtR~~~----- 145 (1165)
++++.+.........+....+...+ +++++++++|+++.-. +-+.+...+. .. .....||.++...+
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~ 179 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTIREQ 179 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHH
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccchhh
Confidence 9998654322222222233333332 4678999999996643 2222322221 11 11223333343321
Q ss_pred H----HHhhcccceeeCCCCCHHHHHHHHhhcc
Q 038861 146 V----AERVGSVREYPLGELSKEDCLRVLTQHS 174 (1165)
Q Consensus 146 ~----~~~~~~~~~~~l~~l~~~e~~~lf~~~~ 174 (1165)
+ ...+ ....+..++++.+|-.+++..++
T Consensus 180 L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 180 INIMPSLKA-HFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHH
T ss_pred cchhhhccC-CceEEEeCCCCHHHHHHHHHHHH
Confidence 1 1122 12468999999999999988875
No 159
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.70 E-value=3.3e-08 Score=108.63 Aligned_cols=183 Identities=14% Similarity=0.107 Sum_probs=110.3
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
+|+++.++.+..++.... ...+.|+|++|+||||+|+.+++. .........++.+... +.... .
T Consensus 28 ~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~-~~~~~-~------ 91 (327)
T 1iqp_A 28 VGQEHIVKRLKHYVKTGS------MPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNAS-DERGI-N------ 91 (327)
T ss_dssp CSCHHHHHHHHHHHHHTC------CCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETT-CHHHH-H------
T ss_pred hCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeecc-ccCch-H------
Confidence 699999999999986542 234899999999999999999853 2111111112222211 11000 0
Q ss_pred cCCCCCCCCHHHHHHHHHHH--h-cCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCchH-HHHhh-cccce
Q 038861 81 SNVTVNDNDLNSLQEKLEKE--L-IKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRV-VAERV-GSVRE 155 (1165)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~--l-~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~-~~~~~-~~~~~ 155 (1165)
...+........ + .+++.++|+|+++.........+...+.....++++|+||.... +...+ .....
T Consensus 92 --------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~ 163 (327)
T 1iqp_A 92 --------VIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAI 163 (327)
T ss_dssp --------TTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEE
T ss_pred --------HHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcE
Confidence 000000111000 1 25678999999977655555556555544556788888887643 11111 12247
Q ss_pred eeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHhhh
Q 038861 156 YPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLGGLL 211 (1165)
Q Consensus 156 ~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 211 (1165)
+++.+++.++..+++...+..... .-..+....|++.++|.|..+..+...+
T Consensus 164 ~~~~~l~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 164 FRFRPLRDEDIAKRLRYIAENEGL----ELTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTC----EECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 899999999999998876543221 1223678889999999998665544433
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.67 E-value=3.7e-08 Score=109.09 Aligned_cols=101 Identities=17% Similarity=0.113 Sum_probs=48.6
Q ss_pred EEEcCCCCchhhhhhccc-Cccceeeeec-ccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCC
Q 038861 967 LEVSYCSKLESLAERLDN-TSLEVIAISY-LENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCE 1044 (1165)
Q Consensus 967 L~l~~~~~~~~~~~~~~~-~~L~~L~L~~-n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 1044 (1165)
++.++++.+..+|. +.. ++|+.|+|++ |.+.+..+..|.++++|++|+|++|.+.+..|..|..+++|+.|+|++|.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 44444422333444 222 4455555553 55544444445555555555555555444444445555555555555555
Q ss_pred CCCcCCcccCCCCCCceeeeccCCC
Q 038861 1045 NLKALPNCMHNLTSLLHLEIGWCRS 1069 (1165)
Q Consensus 1045 ~~~~~~~~~~~l~~L~~L~l~~n~~ 1069 (1165)
+.+..+..|..++ |+.|+|++|++
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred cceeCHHHcccCC-ceEEEeeCCCc
Confidence 5444333444333 55555555544
No 161
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.64 E-value=1.2e-07 Score=106.21 Aligned_cols=192 Identities=15% Similarity=0.129 Sum_probs=109.3
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHh-
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMS- 79 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~- 79 (1165)
|||+++++.+..++..... ...+.|+|++|+||||+|+.+++.......+.. ..+... .....+...
T Consensus 19 vg~~~~~~~L~~~l~~~~~-----~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~~~----~~~~~~~~~~ 86 (373)
T 1jr3_A 19 VGQEHVLTALANGLSLGRI-----HHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVC----DNCREIEQGR 86 (373)
T ss_dssp CSCHHHHHHHHHHHHHTCC-----CSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCCSSS----HHHHHHHTSC
T ss_pred cCcHHHHHHHHHHHHhCCC-----CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCCccc----HHHHHHhccC
Confidence 6999999999999965431 347899999999999999999753211111100 000000 001111110
Q ss_pred ------ccCCC-CCCCCHHHHHHHHHHH-hcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCchH-HHHh-
Q 038861 80 ------ISNVT-VNDNDLNSLQEKLEKE-LIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRV-VAER- 149 (1165)
Q Consensus 80 ------l~~~~-~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~-~~~~- 149 (1165)
+.... .......++...+... ..+++.++|+||++.........+...+.....+..+|++|.... +...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l 166 (373)
T 1jr3_A 87 FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (373)
T ss_dssp CSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHH
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHH
Confidence 00000 0111122221111110 134678999999976655555566555554455677777776432 1111
Q ss_pred hcccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHHH
Q 038861 150 VGSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLG 208 (1165)
Q Consensus 150 ~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 208 (1165)
......+++.+++.++..+++...+...+. .-..+.+..|++.++|.|..+..+.
T Consensus 167 ~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~----~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHI----AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTC----CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HhheeEeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 123367899999999999998876422111 1123667889999999998776654
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.63 E-value=4.3e-08 Score=108.62 Aligned_cols=102 Identities=16% Similarity=-0.005 Sum_probs=61.6
Q ss_pred eeeecc-cccccCCcccCCCCCCCEEEEeC-CCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccC
Q 038861 990 IAISYL-ENLKSLPAGLHNLHHLQELKVYG-CPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWC 1067 (1165)
Q Consensus 990 L~L~~n-~~~~~~p~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n 1067 (1165)
++.+++ .+ ..+|. +..+++|++|+|++ |.+.+..+..|..+++|+.|+|++|.+.+..|..|.++++|+.|+|++|
T Consensus 13 v~~~~~n~l-~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGAL-DSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCC-TTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCC-CccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455555 34 34555 66666677777764 6655555556666667777777777666666666666777777777776
Q ss_pred CCCcccCCCCCCCCcceEEEecCCCC
Q 038861 1068 RSLVSFPEDGFPTNLESLEVHDLKIS 1093 (1165)
Q Consensus 1068 ~~~~~~p~~~~~~~L~~L~l~~n~~~ 1093 (1165)
++.+..+.......|+.|++.+|++.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCcc
Confidence 66433222222222667777766665
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.59 E-value=1.3e-06 Score=98.40 Aligned_cols=121 Identities=12% Similarity=0.033 Sum_probs=54.3
Q ss_pred CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeee
Q 038861 985 TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEI 1064 (1165)
Q Consensus 985 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 1064 (1165)
..++.+.+..+.. ......|.+++.++.+...... ....++..+.+|+.+.+..+ +...-...|.++.+|+.+++
T Consensus 253 ~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~l 327 (394)
T 4fs7_A 253 TDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDL 327 (394)
T ss_dssp SSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECC
T ss_pred ccceeEEcCCCcc-eeeccccccccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCCCEEEe
Confidence 4444444443321 2223344555555555544322 12234445555555555432 22333345555555555555
Q ss_pred ccCCCCcccCCC--CCCCCcceEEEecCCCCCcccccccccCCCCcEEEEec
Q 038861 1065 GWCRSLVSFPED--GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITG 1114 (1165)
Q Consensus 1065 ~~n~~~~~~p~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 1114 (1165)
..+ + ..++.. ..+.+|+.+++..+ +. .+....|.++++|+.+++..
T Consensus 328 p~~-v-~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 328 PYL-V-EEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CTT-C-CEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEG
T ss_pred CCc-c-cEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECC
Confidence 432 2 333332 34455555555443 22 23333455555555555543
No 164
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.59 E-value=1.4e-07 Score=103.07 Aligned_cols=178 Identities=12% Similarity=0.082 Sum_probs=107.8
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCC-ceEEEEEcCCCCHHHHHHHHHHh
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFE-IKAWTFVSEDFDVFRVTKSILMS 79 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~w~~~~~~~~~~~~~~~i~~~ 79 (1165)
+|+++.++.+.+++... ....+.|+|++|+|||++|+.+++... ...+. ..+.+..+.....
T Consensus 20 ~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~---------- 82 (319)
T 2chq_A 20 VGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGI---------- 82 (319)
T ss_dssp CSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCT----------
T ss_pred hCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccCh----------
Confidence 68999999988888543 222389999999999999999985311 11111 1122332221110
Q ss_pred ccCCCCCCCCHHHHHHHHHHH--h-cCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCchH-HHHh-hcccc
Q 038861 80 ISNVTVNDNDLNSLQEKLEKE--L-IKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRV-VAER-VGSVR 154 (1165)
Q Consensus 80 l~~~~~~~~~~~~~~~~l~~~--l-~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~-~~~~-~~~~~ 154 (1165)
............. + .+++.++|+|+++.........+...+.....++++|+||.... +... .....
T Consensus 83 --------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 154 (319)
T 2chq_A 83 --------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (319)
T ss_dssp --------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCE
T ss_pred --------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCe
Confidence 1111111111111 1 25678999999976554455666666655556778888876543 1111 12235
Q ss_pred eeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHH
Q 038861 155 EYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTL 207 (1165)
Q Consensus 155 ~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 207 (1165)
.+++.+++.++..+++...+...+. .-..+....+++.++|.+..+...
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~----~i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 155 VFRFKPVPKEAMKKRLLEICEKEGV----KITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTCC----CBCHHHHHHHHHTTTTCHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 7999999999999998876543221 112367788999999998765543
No 165
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.57 E-value=2.9e-09 Score=117.71 Aligned_cols=159 Identities=12% Similarity=-0.014 Sum_probs=105.4
Q ss_pred CCCccEEEEcCCCCchhhhh----hcc-c-CccceeeeecccccccCCcc-cCCCCCCCEEEEeCCCCCccccCCC----
Q 038861 961 PQALKYLEVSYCSKLESLAE----RLD-N-TSLEVIAISYLENLKSLPAG-LHNLHHLQELKVYGCPNLESFPEGG---- 1029 (1165)
Q Consensus 961 ~~~L~~L~l~~~~~~~~~~~----~~~-~-~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~~~~~~---- 1029 (1165)
.++|+.|++++|.+...... .+. . ++|+.|+|++|.+....... ...+++|++|+|++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 36789999999976543322 222 2 58999999999875432222 2345688999999998754332222
Q ss_pred -CCCCCcCeEEeecCCCCC----cCCcccCCCCCCceeeeccCCCCcc----cCCC-CCCCCcceEEEecCCCCCcc---
Q 038861 1030 -LPSTKLTKLTIGYCENLK----ALPNCMHNLTSLLHLEIGWCRSLVS----FPED-GFPTNLESLEVHDLKISKPL--- 1096 (1165)
Q Consensus 1030 -~~l~~L~~L~L~~n~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~----~p~~-~~~~~L~~L~l~~n~~~~~~--- 1096 (1165)
...++|++|+|++|.+.. .++..+...++|++|+|++|.+... ++.. ..+++|+.|++++|.+....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 245789999999998754 2344557788899999999987321 1111 34568999999999887421
Q ss_pred cccccccCCCCcEEEEecCCCCc
Q 038861 1097 FEWGLNKFSSLRELQITGGCPVL 1119 (1165)
Q Consensus 1097 ~~~~~~~l~~L~~L~l~~n~~~~ 1119 (1165)
....+...++|++|+|++|.+..
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHhCCCCCEEeccCCCCCH
Confidence 11224556888999998886543
No 166
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.49 E-value=3.5e-09 Score=117.08 Aligned_cols=155 Identities=14% Similarity=0.045 Sum_probs=107.6
Q ss_pred CccceeeeecccccccCCc----ccC-CCCCCCEEEEeCCCCCccccCCC-CCCCCcCeEEeecCCCCCcCCccc-----
Q 038861 985 TSLEVIAISYLENLKSLPA----GLH-NLHHLQELKVYGCPNLESFPEGG-LPSTKLTKLTIGYCENLKALPNCM----- 1053 (1165)
Q Consensus 985 ~~L~~L~L~~n~~~~~~p~----~~~-~l~~L~~L~L~~n~~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~----- 1053 (1165)
++|+.|++++|.+...... .+. ..++|++|+|++|.+.......+ ..+++|+.|+|++|.+.......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 7899999999998654322 233 33799999999998754322222 235689999999998765433333
Q ss_pred CCCCCCceeeeccCCCCc----ccCCC-CCCCCcceEEEecCCCCCcc---cccccccCCCCcEEEEecCCCCcccCCC-
Q 038861 1054 HNLTSLLHLEIGWCRSLV----SFPED-GFPTNLESLEVHDLKISKPL---FEWGLNKFSSLRELQITGGCPVLLSSPW- 1124 (1165)
Q Consensus 1054 ~~l~~L~~L~l~~n~~~~----~~p~~-~~~~~L~~L~l~~n~~~~~~---~~~~~~~l~~L~~L~l~~n~~~~~~~~~- 1124 (1165)
...++|++|+|++|.+.. .++.. ...++|++|+|++|++.... ....+...++|+.|+|++|.+.......
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 356899999999998732 12221 35678999999999987421 1234677889999999998775433221
Q ss_pred -----CCCcccEEEecCCCC
Q 038861 1125 -----FPASLTVLHISYMPN 1139 (1165)
Q Consensus 1125 -----~~~~L~~L~l~~~~~ 1139 (1165)
..++|++|+|++|+.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHhCCCCCEEeccCCCC
Confidence 136799999999763
No 167
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.44 E-value=7.3e-06 Score=92.11 Aligned_cols=101 Identities=13% Similarity=0.072 Sum_probs=68.9
Q ss_pred cccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC--CCCC
Q 038861 1003 AGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED--GFPT 1080 (1165)
Q Consensus 1003 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~--~~~~ 1080 (1165)
..+..+++|+++.+..+ +...-..+|.++++|+.++|..+ +...-..+|.++.+|+.+.+..+ + ..++.. ..+.
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l-~~I~~~aF~~C~ 366 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-L-RKIGANAFQGCI 366 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-C-CEECTTTBTTCT
T ss_pred ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-c-cEehHHHhhCCC
Confidence 45667788888888654 34444567888888888888653 44444667888888888888765 3 455544 6678
Q ss_pred CcceEEEecCCCCCcccccccccCCCCcEE
Q 038861 1081 NLESLEVHDLKISKPLFEWGLNKFSSLREL 1110 (1165)
Q Consensus 1081 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 1110 (1165)
+|+.+++..+- . .+ ...|.++++|+.+
T Consensus 367 ~L~~i~lp~~~-~-~~-~~~F~~c~~L~~I 393 (394)
T 4fs7_A 367 NLKKVELPKRL-E-QY-RYDFEDTTKFKWI 393 (394)
T ss_dssp TCCEEEEEGGG-G-GG-GGGBCTTCEEEEE
T ss_pred CCCEEEECCCC-E-Eh-hheecCCCCCcEE
Confidence 88888887652 1 22 3347788887765
No 168
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.44 E-value=3.9e-07 Score=91.22 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=35.6
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCC
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
+||+++++++.+++... ..+.+.|+|++|+|||++|+++++.
T Consensus 25 ~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 25 IGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 69999999999999543 2356899999999999999999853
No 169
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.41 E-value=2.1e-06 Score=94.28 Aligned_cols=175 Identities=16% Similarity=0.154 Sum_probs=100.3
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
||++..++.+..++..... .......|.|+|++|+|||++|+++++. .... .+.+........
T Consensus 32 iG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~---~~~~~~~~~~~~----------- 94 (338)
T 3pfi_A 32 IGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYE--MSAN---IKTTAAPMIEKS----------- 94 (338)
T ss_dssp CSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCC---EEEEEGGGCCSH-----------
T ss_pred CChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEecchhccch-----------
Confidence 6999999999988864311 1123445899999999999999999742 2222 122322211111
Q ss_pred cCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCccchhhhhcccCCC------------------CCCcEEEEecC
Q 038861 81 SNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENYNDWELLNRPFKAG------------------TSGSKIIVTTR 142 (1165)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~------------------~~~~~iiiTtR 142 (1165)
......+.. ..+..+|++|+++.........+...+... .++.++|.+|.
T Consensus 95 ----------~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn 162 (338)
T 3pfi_A 95 ----------GDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATT 162 (338)
T ss_dssp ----------HHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEES
T ss_pred ----------hHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCC
Confidence 111111111 235578899999665433333332222111 12355666655
Q ss_pred chH-HHHhh--cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHHH
Q 038861 143 NRV-VAERV--GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLG 208 (1165)
Q Consensus 143 ~~~-~~~~~--~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 208 (1165)
... +...+ .....+++.+++.++..+++...+..... .-..+....|++.+.|.|-.+..+.
T Consensus 163 ~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 163 RAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK----TCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp CGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----EECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 432 11111 12257999999999999998876533221 1223677889999999986555443
No 170
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.38 E-value=7.8e-07 Score=98.75 Aligned_cols=192 Identities=14% Similarity=0.093 Sum_probs=106.9
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCC-ceEEEEEcCCCCHHHHHHHHHHh
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFE-IKAWTFVSEDFDVFRVTKSILMS 79 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~w~~~~~~~~~~~~~~~i~~~ 79 (1165)
+|+++.++.+..++.... ...+.|+|++|+||||+|+.++........+. ..+.+..+.......+. +....
T Consensus 40 ~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 112 (353)
T 1sxj_D 40 TAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVR-EKVKN 112 (353)
T ss_dssp CSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHT-THHHH
T ss_pred hCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHH-HHHHH
Confidence 689999999999985432 12389999999999999999985421111121 12223333222222221 11111
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCchH-HHHhh-cccceee
Q 038861 80 ISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRV-VAERV-GSVREYP 157 (1165)
Q Consensus 80 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~-~~~~~-~~~~~~~ 157 (1165)
............ .....-.+++-++++|+++.........+...+.......++|++|.... +...+ .....++
T Consensus 113 ~~~~~~~~~~~~----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~ 188 (353)
T 1sxj_D 113 FARLTVSKPSKH----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFR 188 (353)
T ss_dssp HHHSCCCCCCTT----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEE
T ss_pred Hhhhcccccchh----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEE
Confidence 111000000000 00011123567999999966554444445444444445667777765432 21111 1224789
Q ss_pred CCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHH
Q 038861 158 LGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTL 207 (1165)
Q Consensus 158 l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 207 (1165)
+.+++.++..+.+...+..... . -..+..+.|++.++|.|-.+..+
T Consensus 189 ~~~~~~~~~~~~l~~~~~~~~~-~---i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 189 FKALDASNAIDRLRFISEQENV-K---CDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTC-C---CCHHHHHHHHHHTSSCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHhCC-C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999998876533221 1 12367889999999998765443
No 171
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.36 E-value=3.3e-07 Score=95.59 Aligned_cols=168 Identities=13% Similarity=0.045 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCC
Q 038861 5 KDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVT 84 (1165)
Q Consensus 5 ~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~ 84 (1165)
+.++.+..+.... ..+.+.|+|++|+||||+|+.+++. .......+.|+......+. +...
T Consensus 38 ~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~------~~~~----- 98 (242)
T 3bos_A 38 ELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI------STAL----- 98 (242)
T ss_dssp HHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS------CGGG-----
T ss_pred HHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH------HHHH-----
Confidence 4556666665432 2357899999999999999999853 3333344566665432110 0000
Q ss_pred CCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCccc--hhhhhcccCCC-CCC-cEEEEecCch---------HHHHhhc
Q 038861 85 VNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENYND--WELLNRPFKAG-TSG-SKIIVTTRNR---------VVAERVG 151 (1165)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~--~~~l~~~~~~~-~~~-~~iiiTtR~~---------~~~~~~~ 151 (1165)
+ +.+ .++.+||+||++...... .+.+...+... ..+ .++|+||+.. .+...+.
T Consensus 99 ------------~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~ 164 (242)
T 3bos_A 99 ------------L-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMH 164 (242)
T ss_dssp ------------G-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHH
T ss_pred ------------H-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhh
Confidence 0 011 345689999996543222 22232221111 112 2477777632 1222222
Q ss_pred ccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHHHh
Q 038861 152 SVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTLGG 209 (1165)
Q Consensus 152 ~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 209 (1165)
....+++++++.++..+++...+..... .-..+....+++.++|.+-.+..+..
T Consensus 165 ~~~~i~l~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 165 WGLTYQLQPMMDDEKLAALQRRAAMRGL----QLPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp HSEEEECCCCCGGGHHHHHHHHHHHTTC----CCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred cCceEEeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 2267999999999999999887532221 11236778899999998876665433
No 172
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.23 E-value=7.2e-06 Score=87.51 Aligned_cols=182 Identities=18% Similarity=0.121 Sum_probs=97.4
Q ss_pred CCchHHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDS-------RADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVT 73 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~ 73 (1165)
+|+++.++++.+.+..... .+-...+.+.|+|++|+|||++|++++.. .... .+.+....
T Consensus 20 ~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~---~~~v~~~~-------- 86 (285)
T 3h4m_A 20 GGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNAT---FIRVVGSE-------- 86 (285)
T ss_dssp CSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCE---EEEEEGGG--------
T ss_pred cCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehHH--------
Confidence 5889999999887743100 00112356899999999999999999853 2211 12222211
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCC-----------Ccc---chhhhhcccC--CCCCCcEE
Q 038861 74 KSILMSISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNE-----------NYN---DWELLNRPFK--AGTSGSKI 137 (1165)
Q Consensus 74 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-----------~~~---~~~~l~~~~~--~~~~~~~i 137 (1165)
+... ............+......++.+|++|+++.. ... .+..+...+. ....+..|
T Consensus 87 ------~~~~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~v 159 (285)
T 3h4m_A 87 ------LVKK-FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKI 159 (285)
T ss_dssp ------GCCC-STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEE
T ss_pred ------HHHh-ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEE
Confidence 1000 00111112222233333456789999999431 000 1111211111 12346678
Q ss_pred EEecCchHHHH-hh----cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCC-CchHHHHH
Q 038861 138 IVTTRNRVVAE-RV----GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKG-LPLAAKTL 207 (1165)
Q Consensus 138 iiTtR~~~~~~-~~----~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~ 207 (1165)
|.||...+... .. .-...+.++..+.++..+++...+..... ... .....+++.+.| .|-.+..+
T Consensus 160 I~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~----~~~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 160 IGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AED----VNLEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp EEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTT----CCHHHHHHHCTTCCHHHHHHH
T ss_pred EEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCc----CCHHHHHHHcCCCCHHHHHHH
Confidence 88887543211 11 12247899999999999999887543321 111 124667777877 45455443
No 173
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.23 E-value=1.7e-05 Score=86.27 Aligned_cols=171 Identities=13% Similarity=0.094 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhcc-------------------CCceEEEEEc
Q 038861 4 KKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRH-------------------FEIKAWTFVS 64 (1165)
Q Consensus 4 ~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-------------------f~~~~w~~~~ 64 (1165)
++..+.+...+..+. -...+.++|++|+|||++|+.+++...-... .....++...
T Consensus 8 ~~~~~~l~~~i~~~~-----~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~ 82 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-----GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPE 82 (334)
T ss_dssp HHHHHHHHHHHHTTC-----CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCC
T ss_pred HHHHHHHHHHHHcCC-----cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecc
Confidence 455667777775432 2457899999999999999998753111000 0111222111
Q ss_pred CCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHh-----cCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEE
Q 038861 65 EDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKEL-----IKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIV 139 (1165)
Q Consensus 65 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iii 139 (1165)
. .......++... +.+.+ .+++-++|+|+++.........+...+....+++.+|+
T Consensus 83 ~------------------~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il 143 (334)
T 1a5t_A 83 K------------------GKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFL 143 (334)
T ss_dssp T------------------TCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEE
T ss_pred c------------------cCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEE
Confidence 0 001122232222 22222 24577999999976554455566666655556677777
Q ss_pred ecCchH-HHHhh-cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHHH
Q 038861 140 TTRNRV-VAERV-GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKTL 207 (1165)
Q Consensus 140 TtR~~~-~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 207 (1165)
+|.... +.... .....+++.++++++..+++.... . . ..+.+..+++.++|.|..+..+
T Consensus 144 ~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~--~---~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 144 ATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----T--M---SQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----C--C---CHHHHHHHHHHTTTCHHHHHHT
T ss_pred EeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----C--C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 766542 22222 233579999999999999998774 1 1 1256688999999999766543
No 174
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.23 E-value=8.3e-06 Score=90.89 Aligned_cols=192 Identities=13% Similarity=0.104 Sum_probs=101.1
Q ss_pred CCchHHHHH---HHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEc----CCCCHHHHH
Q 038861 1 YGRKKDKDE---IVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVS----EDFDVFRVT 73 (1165)
Q Consensus 1 vGR~~~~~~---l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~----~~~~~~~~~ 73 (1165)
||++..++. +.+.+.... ...+.+.|+|++|+|||++|+.+++. ...... .+.+... .........
T Consensus 47 vG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~--l~~~~~-~~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 47 VGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQA--LGPDTP-FTAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp ESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHH--HCSSCC-EEEEEGGGGSCSSSCHHHHH
T ss_pred cChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHH--hcccCC-cccccchhhhhcccchhHHH
Confidence 578888666 444444332 22367999999999999999999853 222111 1112211 122333343
Q ss_pred HHHHHhccCCC---------------------------C---CCCCHHHHHHHHHHHh-----cCc----eEEEEEeCCC
Q 038861 74 KSILMSISNVT---------------------------V---NDNDLNSLQEKLEKEL-----IKK----KFLLVLDDMW 114 (1165)
Q Consensus 74 ~~i~~~l~~~~---------------------------~---~~~~~~~~~~~l~~~l-----~~~----~~LlvlDdv~ 114 (1165)
.+.++...... . ...........+.+.. .++ +.+|++|+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 33333211100 0 0000122222222211 233 3599999997
Q ss_pred CCCccchhhhhcccCCCCCCcEEEEecC-------------c----hHHHHhhcccceeeCCCCCHHHHHHHHhhcccCC
Q 038861 115 NENYNDWELLNRPFKAGTSGSKIIVTTR-------------N----RVVAERVGSVREYPLGELSKEDCLRVLTQHSLGA 177 (1165)
Q Consensus 115 ~~~~~~~~~l~~~~~~~~~~~~iiiTtR-------------~----~~~~~~~~~~~~~~l~~l~~~e~~~lf~~~~~~~ 177 (1165)
.........+...+...... .++++|. . +.+. .....+.+++++.++..+++...+...
T Consensus 200 ~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~---sR~~~i~~~~~~~~e~~~il~~~~~~~ 275 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLL---DRLLIVSTTPYSEKDTKQILRIRCEEE 275 (368)
T ss_dssp GSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHH---TTEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred ccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHH---hhccEEEecCCCHHHHHHHHHHHHHHc
Confidence 65544455555544443333 3444442 1 1222 223458999999999999998775332
Q ss_pred CCCCCCcchHHHHHHHHHHcC-CCchHHHHH
Q 038861 178 TDFNTHQSLKEVREKIAMKCK-GLPLAAKTL 207 (1165)
Q Consensus 178 ~~~~~~~~~~~~~~~i~~~~~-g~Plal~~~ 207 (1165)
.. .-..+....|++.+. |.|-.+..+
T Consensus 276 ~~----~~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 276 DV----EMSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp TC----CBCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CC----CCCHHHHHHHHHHhcCCCHHHHHHH
Confidence 21 122367788999987 777655443
No 175
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.23 E-value=3.4e-06 Score=93.44 Aligned_cols=103 Identities=9% Similarity=0.059 Sum_probs=64.4
Q ss_pred CceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCch-HHHHhh-cccceeeCCCCCHHHHHHHHhhcccCCCCC
Q 038861 103 KKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNR-VVAERV-GSVREYPLGELSKEDCLRVLTQHSLGATDF 180 (1165)
Q Consensus 103 ~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~-~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~ 180 (1165)
+++-++|+|+++.-+......+...+.....+.++|++|... .+.... .....+++.+++.++..+.+...+...+..
T Consensus 133 ~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (354)
T 1sxj_E 133 HRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ 212 (354)
T ss_dssp -CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE
T ss_pred CCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 366799999997754444445544444334567777777653 221111 233679999999999999988765322211
Q ss_pred CCCcchHHHHHHHHHHcCCCchHHHHHH
Q 038861 181 NTHQSLKEVREKIAMKCKGLPLAAKTLG 208 (1165)
Q Consensus 181 ~~~~~~~~~~~~i~~~~~g~Plal~~~~ 208 (1165)
.+. .+.+..|++.++|.+-.+..+.
T Consensus 213 ~~~---~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 213 LET---KDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp ECC---SHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCc---HHHHHHHHHHcCCCHHHHHHHH
Confidence 110 2677889999999886555443
No 176
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.22 E-value=3.5e-06 Score=97.66 Aligned_cols=192 Identities=14% Similarity=0.110 Sum_probs=102.9
Q ss_pred CCchHHHHHHHHHHhcCC---------C--CCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCH
Q 038861 1 YGRKKDKDEIVELLLRDD---------S--RADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDV 69 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~---------~--~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~ 69 (1165)
+|+++.++++.+++.... . .+.+..+.+.|+|++|+||||+|+.+++.. .+ .++.+..+.....
T Consensus 42 iG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~-~~i~in~s~~~~~ 116 (516)
T 1sxj_A 42 CGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY-DILEQNASDVRSK 116 (516)
T ss_dssp CSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC-EEEEECTTSCCCH
T ss_pred cCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEeCCCcchH
Confidence 699999999999996511 0 011234689999999999999999998532 11 2233444433333
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHH--HhcCceEEEEEeCCCCCCccc---hhhhhcccCCCCCCcEEEEecCch
Q 038861 70 FRVTKSILMSISNVTVNDNDLNSLQEKLEK--ELIKKKFLLVLDDMWNENYND---WELLNRPFKAGTSGSKIIVTTRNR 144 (1165)
Q Consensus 70 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~--~l~~~~~LlvlDdv~~~~~~~---~~~l~~~~~~~~~~~~iiiTtR~~ 144 (1165)
. .....+....... ..........+ ...+++.+|++|+++.....+ +..+...+.. .+..||+++...
T Consensus 117 ~-~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 117 T-LLNAGVKNALDNM----SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp H-HHHHTGGGGTTBC----CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred H-HHHHHHHHHhccc----cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 2 2222222211110 00000000000 123567899999996543221 2333332222 233355544432
Q ss_pred H---HHHhhcccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCC-chHHHHHH
Q 038861 145 V---VAERVGSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGL-PLAAKTLG 208 (1165)
Q Consensus 145 ~---~~~~~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~ 208 (1165)
. +.........+++++++.++..+++...+.......+ + +....|++.++|. +-++..+.
T Consensus 190 ~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~-~---~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 190 NLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD-P---NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp TSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC-T---THHHHHHHHTTTCHHHHHHHHT
T ss_pred CCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC-H---HHHHHHHHHcCCcHHHHHHHHH
Confidence 1 2111122357899999999999888776532221111 1 5577899999984 55555553
No 177
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.21 E-value=1.2e-05 Score=90.32 Aligned_cols=174 Identities=21% Similarity=0.187 Sum_probs=97.4
Q ss_pred CCchHHH---HHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCC-CCHHHHHHHH
Q 038861 1 YGRKKDK---DEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSED-FDVFRVTKSI 76 (1165)
Q Consensus 1 vGR~~~~---~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~-~~~~~~~~~i 76 (1165)
||++..+ ..+...+.... ...+.|+|++|+||||+|+.+++. .... ++.+... .....+ +.+
T Consensus 29 vGq~~~~~~~~~L~~~i~~~~------~~~vLL~GppGtGKTtlAr~ia~~--~~~~-----f~~l~a~~~~~~~i-r~~ 94 (447)
T 3pvs_A 29 IGQQHLLAAGKPLPRAIEAGH------LHSMILWGPPGTGKTTLAEVIARY--ANAD-----VERISAVTSGVKEI-REA 94 (447)
T ss_dssp CSCHHHHSTTSHHHHHHHHTC------CCEEEEECSTTSSHHHHHHHHHHH--TTCE-----EEEEETTTCCHHHH-HHH
T ss_pred CCcHHHHhchHHHHHHHHcCC------CcEEEEECCCCCcHHHHHHHHHHH--hCCC-----eEEEEeccCCHHHH-HHH
Confidence 5777777 67777775432 357899999999999999999853 2222 2222221 122111 111
Q ss_pred HHhccCCCCCCCCHHHHHHHHH-HHhcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEE-ecCchH--HH-Hhhc
Q 038861 77 LMSISNVTVNDNDLNSLQEKLE-KELIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIV-TTRNRV--VA-ERVG 151 (1165)
Q Consensus 77 ~~~l~~~~~~~~~~~~~~~~l~-~~l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iii-TtR~~~--~~-~~~~ 151 (1165)
..... ....+++.+|++|+++.......+.+...+.. + ...+|. ||.+.. +. ....
T Consensus 95 -----------------~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL~s 155 (447)
T 3pvs_A 95 -----------------IERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSALLS 155 (447)
T ss_dssp -----------------HHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHHHT
T ss_pred -----------------HHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHHhC
Confidence 11111 11246788999999977554444444444433 1 233443 555432 11 1122
Q ss_pred ccceeeCCCCCHHHHHHHHhhcccCCCCC---CCCcchHHHHHHHHHHcCCCchHHHHH
Q 038861 152 SVREYPLGELSKEDCLRVLTQHSLGATDF---NTHQSLKEVREKIAMKCKGLPLAAKTL 207 (1165)
Q Consensus 152 ~~~~~~l~~l~~~e~~~lf~~~~~~~~~~---~~~~~~~~~~~~i~~~~~g~Plal~~~ 207 (1165)
...++.+.+++.++..+++...+...... ....-..+..+.|++.++|.+-.+..+
T Consensus 156 R~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 156 RARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred ceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 33578899999999999888765331110 111223477888999999987655443
No 178
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.20 E-value=1.1e-06 Score=95.96 Aligned_cols=135 Identities=19% Similarity=0.154 Sum_probs=76.1
Q ss_pred CCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCccc--CCCCCCceeeeccC--CCCcc----
Q 038861 1001 LPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCM--HNLTSLLHLEIGWC--RSLVS---- 1072 (1165)
Q Consensus 1001 ~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~--~~l~~L~~L~l~~n--~~~~~---- 1072 (1165)
+...+..+|+|++|+|++|.... ++. + .+++|+.|+|..|.+.......+ ..+++|+.|+|+.+ ...+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 33445567788888888773222 222 2 26788888888776543322223 26788888887532 11111
Q ss_pred ----cCCCCCCCCcceEEEecCCCCCccccccc--ccCCCCcEEEEecCCCCcccCC------CCCCcccEEEecCCC
Q 038861 1073 ----FPEDGFPTNLESLEVHDLKISKPLFEWGL--NKFSSLRELQITGGCPVLLSSP------WFPASLTVLHISYMP 1138 (1165)
Q Consensus 1073 ----~p~~~~~~~L~~L~l~~n~~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~------~~~~~L~~L~l~~~~ 1138 (1165)
......+++|+.|++++|++........+ ..+++|+.|+|+.|.+...... ...++|+.|++++|.
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 11113577888888888887642222111 2467788888877655432110 113567777777764
No 179
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.19 E-value=4.4e-06 Score=94.33 Aligned_cols=161 Identities=16% Similarity=0.094 Sum_probs=93.6
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCC--ceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhc
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFE--IKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELI 102 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~--~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 102 (1165)
...+.|+|++|+||||||+.+++. ....+. .++++.. ..+..++...+... . ...+.+.++
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~------~~~~~~~~~~~~~~-----~----~~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----K----LNEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEH------HHHHHHHHHHHHTT-----C----HHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHcc-----c----HHHHHHHhc
Confidence 456899999999999999999853 333332 2344432 22334444433221 1 122333444
Q ss_pred CceEEEEEeCCCCCCc--cchhhhhcccCC-CCCCcEEEEecCch---------HHHHhhcccceeeCCCCCHHHHHHHH
Q 038861 103 KKKFLLVLDDMWNENY--NDWELLNRPFKA-GTSGSKIIVTTRNR---------VVAERVGSVREYPLGELSKEDCLRVL 170 (1165)
Q Consensus 103 ~~~~LlvlDdv~~~~~--~~~~~l~~~~~~-~~~~~~iiiTtR~~---------~~~~~~~~~~~~~l~~l~~~e~~~lf 170 (1165)
.++.+|++||++.... ...+.+...+.. ...|..||+||... .+...+.....+.+++++.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 3667999999955332 112223222211 13467888888752 22222333357899999999999999
Q ss_pred hhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHH
Q 038861 171 TQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKT 206 (1165)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 206 (1165)
...+..... .-++ ++...|++.++|.+-.+.-
T Consensus 273 ~~~~~~~~~-~i~~---e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 273 RKMLEIEHG-ELPE---EVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHHHTC-CCCT---THHHHHHHHCCSCHHHHHH
T ss_pred HHHHHHcCC-CCCH---HHHHHHHHhcCCCHHHHHH
Confidence 877532221 1111 5577888999998865543
No 180
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.18 E-value=7.3e-05 Score=83.89 Aligned_cols=107 Identities=11% Similarity=0.129 Sum_probs=59.1
Q ss_pred cccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC--CCCC
Q 038861 1003 AGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED--GFPT 1080 (1165)
Q Consensus 1003 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~--~~~~ 1080 (1165)
..|.+++.|+.+.+..+- ...-..+|.++++|+.+.+.. .+.......|.++.+|+.+++..+ +..+... ..+.
T Consensus 259 ~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCT
T ss_pred ceeeecccccEEeccccc-ceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCC
Confidence 445566666666665432 333344566666666666652 333333456666666666666543 2334333 4556
Q ss_pred CcceEEEecCCCCCcccccccccCCCCcEEEEecC
Q 038861 1081 NLESLEVHDLKISKPLFEWGLNKFSSLRELQITGG 1115 (1165)
Q Consensus 1081 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 1115 (1165)
+|+.+.+..+ +. .+....|.++++|+.+++.++
T Consensus 335 ~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 335 QLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSC
T ss_pred CCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCc
Confidence 6666666543 22 234445677777777777664
No 181
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.16 E-value=1.2e-05 Score=84.74 Aligned_cols=185 Identities=13% Similarity=0.076 Sum_probs=95.5
Q ss_pred CCchHHHHHHHHHHh---cCCC---CCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHH
Q 038861 1 YGRKKDKDEIVELLL---RDDS---RADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTK 74 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~---~~~~---~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~ 74 (1165)
+|.++.++.+.+++. .... .+....+.+.|+|++|+|||++|+++++. ... ..+.+....-.+
T Consensus 9 ~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~---~~~~~~~~~~~~------ 77 (262)
T 2qz4_A 9 AGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQV---PFLAMAGAEFVE------ 77 (262)
T ss_dssp CSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTC---CEEEEETTTTSS------
T ss_pred CCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCC---CEEEechHHHHh------
Confidence 577777777765543 1110 01123456889999999999999999853 221 122333322110
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCC------------cc---chhhhhcccCC--CCCCcEE
Q 038861 75 SILMSISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNEN------------YN---DWELLNRPFKA--GTSGSKI 137 (1165)
Q Consensus 75 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~------------~~---~~~~l~~~~~~--~~~~~~i 137 (1165)
.............+.......+.+|++|+++... .. ....+...+.. ...+..|
T Consensus 78 ---------~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~v 148 (262)
T 2qz4_A 78 ---------VIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIV 148 (262)
T ss_dssp ---------SSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEE
T ss_pred ---------hccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEE
Confidence 0001111222223333334567899999996531 01 11122222211 2235567
Q ss_pred EEecCchHHH-Hhh----cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCch-HHHHHH
Q 038861 138 IVTTRNRVVA-ERV----GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPL-AAKTLG 208 (1165)
Q Consensus 138 iiTtR~~~~~-~~~----~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~ 208 (1165)
|.||...... ... .-...+.++..+.++..+++...+..... ..........+++.+.|.+- .|..+.
T Consensus 149 i~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~~l~~~~~g~~~~~l~~l~ 222 (262)
T 2qz4_A 149 LASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL---TQSSTFYSQRLAELTPGFSGADIANIC 222 (262)
T ss_dssp EEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC---CBTHHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC---CcchhhHHHHHHHHCCCCCHHHHHHHH
Confidence 7777654321 111 12256789999999999998876533221 11122345778888888754 554443
No 182
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.14 E-value=1e-05 Score=85.43 Aligned_cols=169 Identities=15% Similarity=0.110 Sum_probs=88.3
Q ss_pred CCchHHHHHHHH-------HHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHH
Q 038861 1 YGRKKDKDEIVE-------LLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVT 73 (1165)
Q Consensus 1 vGR~~~~~~l~~-------~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~ 73 (1165)
+|+++.++++.. .+... .....+.+.|+|++|+|||++|+++++. .... .+.+....
T Consensus 36 i~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~---~~~i~~~~-------- 99 (272)
T 1d2n_A 36 IKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEE--SNFP---FIKICSPD-------- 99 (272)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHC---SSCSEEEEEEECSTTSSHHHHHHHHHHH--HTCS---EEEEECGG--------
T ss_pred CCccHHHHHHHHHHHHHHHHHhcc---CCCCCeEEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEeCHH--------
Confidence 456666665555 33211 1235678999999999999999999853 2111 12222221
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCC---------Cccc-hhhhhcccCC---CCCCcEEEEe
Q 038861 74 KSILMSISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNE---------NYND-WELLNRPFKA---GTSGSKIIVT 140 (1165)
Q Consensus 74 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~---------~~~~-~~~l~~~~~~---~~~~~~iiiT 140 (1165)
.+.+. ............+....+.++.+|++|+++.. .... ...+...+.. .+....||.|
T Consensus 100 -----~~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~t 173 (272)
T 1d2n_A 100 -----KMIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGT 173 (272)
T ss_dssp -----GCTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEE
T ss_pred -----HhcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEe
Confidence 01000 00000111222333334467899999998431 0111 1223222221 2234557777
Q ss_pred cCchHHHHhh---cc-cceeeCCCCCH-HHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCC
Q 038861 141 TRNRVVAERV---GS-VREYPLGELSK-EDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGL 200 (1165)
Q Consensus 141 tR~~~~~~~~---~~-~~~~~l~~l~~-~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 200 (1165)
|......... .. ...+.++++++ ++..+++.... . . ..+....+++.+.|.
T Consensus 174 tn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~--~---~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 174 TSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----N--F---KDKERTTIAQQVKGK 229 (272)
T ss_dssp ESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----C--S---CHHHHHHHHHHHTTS
T ss_pred cCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----C--C---CHHHHHHHHHHhcCC
Confidence 7776544431 12 35688999988 66666655431 1 1 125677888888883
No 183
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.10 E-value=1.9e-06 Score=94.11 Aligned_cols=151 Identities=15% Similarity=0.044 Sum_probs=88.9
Q ss_pred CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCC--CCCCCcCeEEeecC--CCCC-----cCCccc--
Q 038861 985 TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGG--LPSTKLTKLTIGYC--ENLK-----ALPNCM-- 1053 (1165)
Q Consensus 985 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~--~~l~~L~~L~L~~n--~~~~-----~~~~~~-- 1053 (1165)
++|+.|+|++|... .++. +. +++|++|+|..|.+.......+ ..+|+|+.|+|+.+ ...+ .+...+
T Consensus 172 P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~ 248 (362)
T 2ra8_A 172 PLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248 (362)
T ss_dssp TTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred CCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence 78888888776322 2333 33 7788888888877544322222 25788888888632 1111 111122
Q ss_pred CCCCCCceeeeccCCCCccc----CCCCCCCCcceEEEecCCCCCccc---ccccccCCCCcEEEEecCCCCcccCCCCC
Q 038861 1054 HNLTSLLHLEIGWCRSLVSF----PEDGFPTNLESLEVHDLKISKPLF---EWGLNKFSSLRELQITGGCPVLLSSPWFP 1126 (1165)
Q Consensus 1054 ~~l~~L~~L~l~~n~~~~~~----p~~~~~~~L~~L~l~~n~~~~~~~---~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 1126 (1165)
..+++|+.|++.+|.+.... .....+++|++|+|+.|.+..... ...+..+++|+.|++++|.+.......+.
T Consensus 249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~ 328 (362)
T 2ra8_A 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ 328 (362)
T ss_dssp TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHH
T ss_pred CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHH
Confidence 35788999999888874322 112357889999998888775321 22245678899999988765432221111
Q ss_pred Ccc-cEEEecCCC
Q 038861 1127 ASL-TVLHISYMP 1138 (1165)
Q Consensus 1127 ~~L-~~L~l~~~~ 1138 (1165)
..+ ..++++.+.
T Consensus 329 ~alg~~~~~~~~~ 341 (362)
T 2ra8_A 329 KSLPMKIDVSDSQ 341 (362)
T ss_dssp HHCCSEEECCSBC
T ss_pred HHcCCEEEecCCc
Confidence 112 456777654
No 184
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.10 E-value=9.8e-06 Score=87.71 Aligned_cols=159 Identities=16% Similarity=0.079 Sum_probs=86.4
Q ss_pred CCchHHHHHHHHHHhcCC---------CCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHH
Q 038861 1 YGRKKDKDEIVELLLRDD---------SRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFR 71 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~---------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~ 71 (1165)
||.++.++.+.+.+.... -........+.|+|++|+|||++|+.+++...........-++.+...
T Consensus 34 ~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~----- 108 (309)
T 3syl_A 34 IGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD----- 108 (309)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG-----
T ss_pred cChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH-----
Confidence 588888888876654210 001223456899999999999999988753222222211223333211
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCC---------CccchhhhhcccCCCCCCcEEEEecC
Q 038861 72 VTKSILMSISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNE---------NYNDWELLNRPFKAGTSGSKIIVTTR 142 (1165)
Q Consensus 72 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~---------~~~~~~~l~~~~~~~~~~~~iiiTtR 142 (1165)
.+.... ...........+... +..+|++|+++.. .......+...+.....+..||+||.
T Consensus 109 -------~l~~~~-~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~ 177 (309)
T 3syl_A 109 -------DLVGQY-IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGY 177 (309)
T ss_dssp -------GTCCSS-TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEEC
T ss_pred -------Hhhhhc-ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 111110 111112222222222 3459999999632 22233444444444455678888886
Q ss_pred chHHHHh------h--cccceeeCCCCCHHHHHHHHhhccc
Q 038861 143 NRVVAER------V--GSVREYPLGELSKEDCLRVLTQHSL 175 (1165)
Q Consensus 143 ~~~~~~~------~--~~~~~~~l~~l~~~e~~~lf~~~~~ 175 (1165)
....... + .....+.+++++.++..+++...+.
T Consensus 178 ~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 178 ADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp HHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 5322110 0 1226789999999999999877653
No 185
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.08 E-value=2.8e-05 Score=84.20 Aligned_cols=182 Identities=13% Similarity=0.024 Sum_probs=100.8
Q ss_pred CCchHHHHHHHHHHhc-------CCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHH
Q 038861 1 YGRKKDKDEIVELLLR-------DDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVT 73 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~-------~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~ 73 (1165)
+|.++.++.+.+.+.. ... .....+-|.|+|++|+|||++|+++++. ....| +.+.. ..
T Consensus 21 ~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~v~~------~~-- 86 (322)
T 3eie_A 21 AGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSS------SD-- 86 (322)
T ss_dssp CSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE---EEEEH------HH--
T ss_pred cChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE---EEEch------HH--
Confidence 5788888888887731 111 2223467899999999999999999853 22222 22221 11
Q ss_pred HHHHHhccCCCCCCCCHHHHH-HHHHHHhcCceEEEEEeCCCCCCcc-----------chhhhhccc---CCCCCCcEEE
Q 038861 74 KSILMSISNVTVNDNDLNSLQ-EKLEKELIKKKFLLVLDDMWNENYN-----------DWELLNRPF---KAGTSGSKII 138 (1165)
Q Consensus 74 ~~i~~~l~~~~~~~~~~~~~~-~~l~~~l~~~~~LlvlDdv~~~~~~-----------~~~~l~~~~---~~~~~~~~ii 138 (1165)
+..... ...+... ..+...-..++.+|++|+++..... ....+...+ .....+..||
T Consensus 87 --l~~~~~------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi 158 (322)
T 3eie_A 87 --LVSKWM------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVL 158 (322)
T ss_dssp --HHTTTG------GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEE
T ss_pred --Hhhccc------chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEE
Confidence 111110 0112222 2222333456789999999542110 012222222 1233456666
Q ss_pred EecCchH-----HHHhhcccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCC-chHHHHHHhh
Q 038861 139 VTTRNRV-----VAERVGSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGL-PLAAKTLGGL 210 (1165)
Q Consensus 139 iTtR~~~-----~~~~~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~~ 210 (1165)
.||.... +.. .-...+.++..+.++-.+++...+...... ........|++.+.|. +-.|..+...
T Consensus 159 ~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~----~~~~~l~~la~~t~g~sg~di~~l~~~ 230 (322)
T 3eie_A 159 GATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCV----LTKEDYRTLGAMTEGYSGSDIAVVVKD 230 (322)
T ss_dssp EEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCC----CCHHHHHHHHHTTTTCCHHHHHHHHHH
T ss_pred EecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCC----CCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 6776542 222 223567889999999999998876432211 1125677889999874 5556555443
No 186
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.07 E-value=7.1e-05 Score=80.64 Aligned_cols=187 Identities=10% Similarity=0.064 Sum_probs=99.2
Q ss_pred CCchHHHHHHHHHHhc----CC--CCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHH
Q 038861 1 YGRKKDKDEIVELLLR----DD--SRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTK 74 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~----~~--~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~ 74 (1165)
+|-++.++.|.+.+.. .. .......+-|.|+|++|+|||++|+++++. . ...-++.+....
T Consensus 15 ~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~----~~~~~~~i~~~~------- 81 (322)
T 1xwi_A 15 AGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--A----NNSTFFSISSSD------- 81 (322)
T ss_dssp CSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH--T----TSCEEEEEECCS-------
T ss_pred cCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH--c----CCCcEEEEEhHH-------
Confidence 4677777777766631 00 001223467899999999999999999853 2 111222222210
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCc------cc-----hhhhhcccC---CCCCCcEEEEe
Q 038861 75 SILMSISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENY------ND-----WELLNRPFK---AGTSGSKIIVT 140 (1165)
Q Consensus 75 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~------~~-----~~~l~~~~~---~~~~~~~iiiT 140 (1165)
+.. .............+...-..++.+|++|+++.... .. ...+...+. ....+..||.|
T Consensus 82 -----l~~-~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~a 155 (322)
T 1xwi_A 82 -----LVS-KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGA 155 (322)
T ss_dssp -----SCC-SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEE
T ss_pred -----HHh-hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEe
Confidence 000 01111222222233333346788999999954210 00 111211111 12345556656
Q ss_pred cCchH-HHHhh--cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCC-chHHHHHHhh
Q 038861 141 TRNRV-VAERV--GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGL-PLAAKTLGGL 210 (1165)
Q Consensus 141 tR~~~-~~~~~--~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~~ 210 (1165)
|.... +...+ +-...+.++..+.++..+++......... . -.......|++.+.|. +-.|..+...
T Consensus 156 tn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-~---l~~~~l~~la~~t~G~sgadl~~l~~~ 225 (322)
T 1xwi_A 156 TNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN-S---LTEADFRELGRKTDGYSGADISIIVRD 225 (322)
T ss_dssp ESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB-C---CCHHHHHHHHHTCTTCCHHHHHHHHHH
T ss_pred cCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC-C---CCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 65432 11111 23357889999999999999876533221 1 1235678899999987 5456655443
No 187
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.07 E-value=0.00011 Score=82.34 Aligned_cols=123 Identities=14% Similarity=0.139 Sum_probs=53.6
Q ss_pred CCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC--CCCCCcceEEEecCCCCCcccccccccC
Q 038861 1027 EGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED--GFPTNLESLEVHDLKISKPLFEWGLNKF 1104 (1165)
Q Consensus 1027 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~l 1104 (1165)
.+|..+.+|+.+.+.++- .......|.++++|+.+.+.. .+ ..++.. ..+.+|+.+++.++ + ..+....|.++
T Consensus 259 ~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~-~i-~~I~~~aF~~c~~L~~i~lp~~-v-~~I~~~aF~~C 333 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS-RI-TELPESVFAGCISLKSIDIPEG-I-TQILDDAFAGC 333 (394)
T ss_dssp TTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT-TC-CEECTTTTTTCTTCCEEECCTT-C-CEECTTTTTTC
T ss_pred ceeeecccccEEeccccc-ceecCcccccccccccccCCC-cc-cccCceeecCCCCcCEEEeCCc-c-cEehHhHhhCC
Confidence 345555556666554432 223334555556666655532 22 333333 34455666655443 2 22333445556
Q ss_pred CCCcEEEEecCCCCcccCCCC--CCcccEEEecCCCCcccHHHhhhcCCccceEee
Q 038861 1105 SSLRELQITGGCPVLLSSPWF--PASLTVLHISYMPNLESLSLIVENLTSLEILIL 1158 (1165)
Q Consensus 1105 ~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l 1158 (1165)
.+|+.+.+..+ ...+....| .++|+.+++.++. ... ..+..++.|+.+.+
T Consensus 334 ~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~--~~~-~~~~~~~~L~~i~i 385 (394)
T 4gt6_A 334 EQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR--SQW-NAISTDSGLQNLPV 385 (394)
T ss_dssp TTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH--HHH-HTCBCCCCC-----
T ss_pred CCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce--eeh-hhhhccCCCCEEEe
Confidence 66666665442 222322222 2355555555421 111 23344455555544
No 188
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.05 E-value=2.1e-05 Score=85.60 Aligned_cols=170 Identities=18% Similarity=0.107 Sum_probs=96.0
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
||+++.++.+.+++.... ...++.++|++|+|||++|+++++. .. ...+.++.+. ....
T Consensus 29 vg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~-~~~~---------- 87 (324)
T 3u61_B 29 ILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSD-CKID---------- 87 (324)
T ss_dssp CCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTT-CCHH----------
T ss_pred hCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEcccc-cCHH----------
Confidence 689999999999997543 2357888899999999999999853 21 1223333222 1121
Q ss_pred cCCCCCCCCHHHHHHHHHHHh-----cCceEEEEEeCCCCCC-ccchhhhhcccCCCCCCcEEEEecCchH-HHHhh-cc
Q 038861 81 SNVTVNDNDLNSLQEKLEKEL-----IKKKFLLVLDDMWNEN-YNDWELLNRPFKAGTSGSKIIVTTRNRV-VAERV-GS 152 (1165)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~-~~~~~~l~~~~~~~~~~~~iiiTtR~~~-~~~~~-~~ 152 (1165)
.....+.+.. .+++.++++|+++... ......+...+.....+.++|+||.... +...+ ..
T Consensus 88 -----------~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR 156 (324)
T 3u61_B 88 -----------FVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR 156 (324)
T ss_dssp -----------HHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH
T ss_pred -----------HHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh
Confidence 1111122111 2367899999996654 3334444443333334667888776543 11111 12
Q ss_pred cceeeCCCCCHHHHHHH-------HhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHH
Q 038861 153 VREYPLGELSKEDCLRV-------LTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAK 205 (1165)
Q Consensus 153 ~~~~~l~~l~~~e~~~l-------f~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 205 (1165)
...+++++++++|-.++ +...+.......++ .+....|++.++|.+-.+.
T Consensus 157 ~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 157 CRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD---MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC---HHHHHHHHHHTCSCTTHHH
T ss_pred CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHhCCCCHHHHH
Confidence 24789999998874332 22221111110111 2667778888888765433
No 189
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.03 E-value=7.7e-05 Score=81.63 Aligned_cols=183 Identities=12% Similarity=0.034 Sum_probs=98.1
Q ss_pred CCchHHHHHHHHHHhcC----C--CCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRD----D--SRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTK 74 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~----~--~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~ 74 (1165)
+|.++.++.|.+.+... . .......+-|.|+|++|+|||++|+++++. ....| +.+.. ..
T Consensus 54 ~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~~---~~v~~------~~--- 119 (355)
T 2qp9_X 54 AGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSS------SD--- 119 (355)
T ss_dssp CCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCEE---EEEEH------HH---
T ss_pred CCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEeeH------HH---
Confidence 57888888888776310 0 001122345899999999999999999853 22211 22221 11
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCcc-----------chhhhhccc---CCCCCCcEEEEe
Q 038861 75 SILMSISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENYN-----------DWELLNRPF---KAGTSGSKIIVT 140 (1165)
Q Consensus 75 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~-----------~~~~l~~~~---~~~~~~~~iiiT 140 (1165)
+.... ...........+...-..++.+|++|+++..... ....+...+ .....+..||.|
T Consensus 120 -l~~~~-----~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~a 193 (355)
T 2qp9_X 120 -LVSKW-----MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGA 193 (355)
T ss_dssp -HHSCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEE
T ss_pred -Hhhhh-----cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEee
Confidence 11111 0111222222233333457899999999643211 011222211 112345666666
Q ss_pred cCchH-----HHHhhcccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCC-chHHHHHHh
Q 038861 141 TRNRV-----VAERVGSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGL-PLAAKTLGG 209 (1165)
Q Consensus 141 tR~~~-----~~~~~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~ 209 (1165)
|.... +.. +....+.++..+.++..+++...+...... -.......|++.+.|. +-.|..+..
T Consensus 194 tn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~----~~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 194 TNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSV----LTKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp ESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBC----CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred cCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCC----CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 65442 222 233577899999999999998775432211 1135677899999884 545555443
No 190
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.95 E-value=1.2e-05 Score=76.06 Aligned_cols=85 Identities=12% Similarity=0.173 Sum_probs=46.6
Q ss_pred CCcceEEEecCCCCCcccccccccCCCCcEEEEecCC-CCcccCCCC------CCcccEEEecCCCCcccHHH-hhhcCC
Q 038861 1080 TNLESLEVHDLKISKPLFEWGLNKFSSLRELQITGGC-PVLLSSPWF------PASLTVLHISYMPNLESLSL-IVENLT 1151 (1165)
Q Consensus 1080 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~------~~~L~~L~l~~~~~l~~l~~-~~~~l~ 1151 (1165)
..|+.||+++|.++...... +.++++|+.|+|+++. +.......+ .++|++|+|++|++++.--. .+.+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 34566666666554332222 4556666666666531 111111001 13577777777777765322 255678
Q ss_pred ccceEeecCCCCCC
Q 038861 1152 SLEILILCKCPKLD 1165 (1165)
Q Consensus 1152 ~L~~L~l~~c~~l~ 1165 (1165)
+|++|++++|++++
T Consensus 140 ~L~~L~L~~c~~It 153 (176)
T 3e4g_A 140 NLKYLFLSDLPGVK 153 (176)
T ss_dssp TCCEEEEESCTTCC
T ss_pred CCCEEECCCCCCCC
Confidence 88888888887764
No 191
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.95 E-value=8e-06 Score=76.37 Aligned_cols=112 Identities=13% Similarity=-0.025 Sum_probs=65.7
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
||+...++++.+.+..... ...-|.|+|++|+|||++|+.+++.... ... ..+ +.+....+.
T Consensus 4 iG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~~-~~~-~~v-~~~~~~~~~----------- 65 (145)
T 3n70_A 4 IGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGRN-AQG-EFV-YRELTPDNA----------- 65 (145)
T ss_dssp CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSSTT-TTS-CCE-EEECCTTTS-----------
T ss_pred eeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCCc-cCC-CEE-EECCCCCcc-----------
Confidence 6899999999988854321 1124789999999999999999864211 111 123 554432221
Q ss_pred cCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCc
Q 038861 81 SNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRN 143 (1165)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~ 143 (1165)
... ...+... ..-+|++|+++.........+...+.......+||.||..
T Consensus 66 -------~~~---~~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 -------PQL---NDFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp -------SCH---HHHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred -------hhh---hcHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 011 1111111 2247899999766544444554444444455677777764
No 192
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.94 E-value=5.2e-05 Score=82.40 Aligned_cols=155 Identities=14% Similarity=0.099 Sum_probs=85.2
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCc
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKK 104 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 104 (1165)
...+.|+|++|+||||||+.+++. ....-..+++++. ..+...+...+.. .... .+.+..+ +
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~------~~~~~~~~~~~~~-----~~~~----~~~~~~~-~ 98 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSA------DDFAQAMVEHLKK-----GTIN----EFRNMYK-S 98 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEH------HHHHHHHHHHHHH-----TCHH----HHHHHHH-T
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEH------HHHHHHHHHHHHc-----CcHH----HHHHHhc-C
Confidence 346899999999999999999853 2221123344443 2233333333221 1111 1222222 3
Q ss_pred eEEEEEeCCCCCCc--cchhhhhcccCC-CCCCcEEEEecCch---------HHHHhhcccceeeCCCCCHHHHHHHHhh
Q 038861 105 KFLLVLDDMWNENY--NDWELLNRPFKA-GTSGSKIIVTTRNR---------VVAERVGSVREYPLGELSKEDCLRVLTQ 172 (1165)
Q Consensus 105 ~~LlvlDdv~~~~~--~~~~~l~~~~~~-~~~~~~iiiTtR~~---------~~~~~~~~~~~~~l~~l~~~e~~~lf~~ 172 (1165)
+.+|++||++.... .....+...+.. ...+.+||+|+... .+...+.....+++++ +.++..+++..
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~ 177 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKE 177 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHH
Confidence 56999999955332 111222222211 12356788877532 2222232335689999 99999999988
Q ss_pred cccCCCCCCCCcchHHHHHHHHHHcCCCchH
Q 038861 173 HSLGATDFNTHQSLKEVREKIAMKCKGLPLA 203 (1165)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 203 (1165)
.+..... .- ..++...|++.+ |..-.
T Consensus 178 ~~~~~~~-~l---~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 178 KLKEFNL-EL---RKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHTTC-CC---CHHHHHHHHHHC-SSHHH
T ss_pred HHHhcCC-CC---CHHHHHHHHHhC-CCHHH
Confidence 7643221 11 236678888888 76643
No 193
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.94 E-value=2.7e-05 Score=85.21 Aligned_cols=173 Identities=12% Similarity=0.134 Sum_probs=98.1
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCC-ceEEEEEcCCCCHHHHHHHHHHh
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFE-IKAWTFVSEDFDVFRVTKSILMS 79 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~w~~~~~~~~~~~~~~~i~~~ 79 (1165)
+|.+..++.+..++..+. +..+.++|++|+||||+|+.++.... ...+. .+..+..+...
T Consensus 28 ~g~~~~~~~L~~~i~~g~------~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~------------ 88 (340)
T 1sxj_C 28 YGQNEVITTVRKFVDEGK------LPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDR------------ 88 (340)
T ss_dssp CSCHHHHHHHHHHHHTTC------CCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCC------------
T ss_pred cCcHHHHHHHHHHHhcCC------CceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccc------------
Confidence 577888888888886532 22389999999999999999985311 11111 01111111111
Q ss_pred ccCCCCCCCCHHHHHHHHHHHh------cCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCchH-HHHh-hc
Q 038861 80 ISNVTVNDNDLNSLQEKLEKEL------IKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRV-VAER-VG 151 (1165)
Q Consensus 80 l~~~~~~~~~~~~~~~~l~~~l------~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~-~~~~-~~ 151 (1165)
..+.....+.... .+.+-++|+|+++.........+...+......+++|++|.... +... ..
T Consensus 89 ---------~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~s 159 (340)
T 1sxj_C 89 ---------GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLS 159 (340)
T ss_dssp ---------SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred ---------cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHh
Confidence 1222222222211 23467899999965544444445444433345667777765432 1111 12
Q ss_pred ccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHH
Q 038861 152 SVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAK 205 (1165)
Q Consensus 152 ~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 205 (1165)
....+++.+++.++..+.+...+..... . -..+..+.+++.++|.+--+.
T Consensus 160 R~~~~~~~~l~~~~~~~~l~~~~~~~~~-~---i~~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 160 QCTRFRFQPLPQEAIERRIANVLVHEKL-K---LSPNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHTTTC-C---BCHHHHHHHHHHHTTCHHHHH
T ss_pred hceeEeccCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHH
Confidence 2247889999999988888765422111 1 113667889999999876433
No 194
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.93 E-value=5e-05 Score=83.35 Aligned_cols=185 Identities=11% Similarity=-0.009 Sum_probs=98.6
Q ss_pred CCchHHHHHHHHHHhc----CCC--CCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHH
Q 038861 1 YGRKKDKDEIVELLLR----DDS--RADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTK 74 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~----~~~--~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~ 74 (1165)
+|+++.++.+.+.+.. ... ......+.|.|+|++|+|||++|++++.. ... ..+.+..+.-.+
T Consensus 87 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~---~~~~i~~~~l~~------ 155 (357)
T 3d8b_A 87 AGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGA---TFFSISASSLTS------ 155 (357)
T ss_dssp CSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTC---EEEEEEGGGGCC------
T ss_pred CChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCC---eEEEEehHHhhc------
Confidence 5888888888887742 000 00123467899999999999999999853 221 122333321110
Q ss_pred HHHHhccCCCCCCCCHHHHHH-HHHHHhcCceEEEEEeCCCCCCc-----------cchhhhhcccCC----CCCCcEEE
Q 038861 75 SILMSISNVTVNDNDLNSLQE-KLEKELIKKKFLLVLDDMWNENY-----------NDWELLNRPFKA----GTSGSKII 138 (1165)
Q Consensus 75 ~i~~~l~~~~~~~~~~~~~~~-~l~~~l~~~~~LlvlDdv~~~~~-----------~~~~~l~~~~~~----~~~~~~ii 138 (1165)
.. .. ....... .+...-..++.+|++|+++.... .....+...+.. ...+..||
T Consensus 156 --------~~-~g-~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI 225 (357)
T 3d8b_A 156 --------KW-VG-EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVV 225 (357)
T ss_dssp --------SS-TT-HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEE
T ss_pred --------cc-cc-hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEE
Confidence 00 00 1111122 22222245678999999932100 001122222211 12345566
Q ss_pred EecCchH-HHHhh--cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCC-CchHHHHHHhh
Q 038861 139 VTTRNRV-VAERV--GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKG-LPLAAKTLGGL 210 (1165)
Q Consensus 139 iTtR~~~-~~~~~--~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~~~ 210 (1165)
.||.... +...+ .....+.+...+.++..+++...+..... . -..+....|++.+.| .+-.|..+...
T Consensus 226 ~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~---l~~~~l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 226 GATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC-C---LSEEEIEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp EEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB-C---CCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred EecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC-C---ccHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 5665432 11111 22246788999999998888776532221 1 113667889999998 45666665543
No 195
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.92 E-value=0.00048 Score=76.82 Aligned_cols=124 Identities=10% Similarity=-0.027 Sum_probs=74.5
Q ss_pred CccceeeeecccccccCCcccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeee
Q 038861 985 TSLEVIAISYLENLKSLPAGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEI 1064 (1165)
Q Consensus 985 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 1064 (1165)
.+|+.+.+..+ +.......+.++..|+.+.+..+ +...-..+|..+.+|+.+.+..+ +.......|.++++|+.+.+
T Consensus 217 ~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l 293 (379)
T 4h09_A 217 KNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVM 293 (379)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEE
T ss_pred cccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccc
Confidence 44555555432 22223445667777777777654 33444456677777777777643 33434456777777777777
Q ss_pred ccCCCCcccCCC--CCCCCcceEEEecCCCCCcccccccccCCCCcEEEEec
Q 038861 1065 GWCRSLVSFPED--GFPTNLESLEVHDLKISKPLFEWGLNKFSSLRELQITG 1114 (1165)
Q Consensus 1065 ~~n~~~~~~p~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 1114 (1165)
.++.+ ..++.. ..+.+|+.+.+.++ + ..+....|.++.+|+.+.+..
T Consensus 294 ~~~~i-~~I~~~aF~~c~~L~~i~lp~~-l-~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 294 DNSAI-ETLEPRVFMDCVKLSSVTLPTA-L-KTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CCTTC-CEECTTTTTTCTTCCEEECCTT-C-CEECTTTTTTCTTCCCCCCCT
T ss_pred ccccc-ceehhhhhcCCCCCCEEEcCcc-c-cEEHHHHhhCCCCCCEEEECC
Confidence 76655 344443 55677777777644 2 234455577778888777754
No 196
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.92 E-value=8.9e-06 Score=80.50 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=35.4
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCC
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
+||+++++.+.+.+... ..+.+.|+|++|+|||++|+++++.
T Consensus 25 ~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 25 IGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 69999999999999553 2346799999999999999999853
No 197
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.88 E-value=0.00014 Score=82.16 Aligned_cols=186 Identities=11% Similarity=0.073 Sum_probs=99.2
Q ss_pred CCchHHHHHHHHHHhc----CCC--CCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHH
Q 038861 1 YGRKKDKDEIVELLLR----DDS--RADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTK 74 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~----~~~--~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~ 74 (1165)
+|.++.++.+.+.+.. ... ......+-|.|+|++|+|||++|++++.. . ...-++.+.... +..
T Consensus 137 ~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~----~~~~~~~v~~~~----l~~ 206 (444)
T 2zan_A 137 AGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--A----NNSTFFSISSSD----LVS 206 (444)
T ss_dssp CSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--C----CSSEEEEECCC--------
T ss_pred cCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--c----CCCCEEEEeHHH----HHh
Confidence 5788888888877631 000 01123467899999999999999999853 2 112233333221 111
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCc-------c----chhhhhcccCC---CCCCcEEEEe
Q 038861 75 SILMSISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENY-------N----DWELLNRPFKA---GTSGSKIIVT 140 (1165)
Q Consensus 75 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~-------~----~~~~l~~~~~~---~~~~~~iiiT 140 (1165)
.. .+ . .......+ +...-..++.+|++|+++.... . ....+...+.. ...+..||.|
T Consensus 207 ~~---~g-~--~~~~~~~~---f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~a 277 (444)
T 2zan_A 207 KW---LG-E--SEKLVKNL---FQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGA 277 (444)
T ss_dssp -----------CCCTHHHH---HHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEE
T ss_pred hh---cc-h--HHHHHHHH---HHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEec
Confidence 10 01 0 11122222 2222245678999999965311 0 01222222222 2345667767
Q ss_pred cCchHHH-Hh-h-cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCC-chHHHHHHh
Q 038861 141 TRNRVVA-ER-V-GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGL-PLAAKTLGG 209 (1165)
Q Consensus 141 tR~~~~~-~~-~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~ 209 (1165)
|...... .. . +....+.++..+.++..++|...+..... .-.......|++.+.|. +-.|..+..
T Consensus 278 tn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~----~l~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 278 TNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN----SLTEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp ESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE----ECCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 7654211 11 1 22246788889999999998877533221 11225677899999984 555655544
No 198
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.86 E-value=0.00021 Score=76.50 Aligned_cols=182 Identities=12% Similarity=0.024 Sum_probs=96.6
Q ss_pred CCchHHHHHHHHHHhcCC------CCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDD------SRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTK 74 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~ 74 (1165)
+|.++.++.+.+++.... .......+.+.|+|++|+||||+|+.++.. .... .+.+..+.-.
T Consensus 24 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~---~~~i~~~~l~------- 91 (297)
T 3b9p_A 24 AGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSAT---FLNISAASLT------- 91 (297)
T ss_dssp CCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCE---EEEEESTTTS-------
T ss_pred CChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEeeHHHHh-------
Confidence 588889999888774210 000112457899999999999999999853 2211 1223322111
Q ss_pred HHHHhccCCCCCCCCHHHHHH-HHHHHhcCceEEEEEeCCCCCCcc-----------chhhhhc---ccCCC--CCCcEE
Q 038861 75 SILMSISNVTVNDNDLNSLQE-KLEKELIKKKFLLVLDDMWNENYN-----------DWELLNR---PFKAG--TSGSKI 137 (1165)
Q Consensus 75 ~i~~~l~~~~~~~~~~~~~~~-~l~~~l~~~~~LlvlDdv~~~~~~-----------~~~~l~~---~~~~~--~~~~~i 137 (1165)
.. .. ........ .+......++.+|++|+++..... ....+.. .+... +.+..|
T Consensus 92 -------~~-~~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~v 162 (297)
T 3b9p_A 92 -------SK-YV-GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVV 162 (297)
T ss_dssp -------SS-SC-SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEE
T ss_pred -------hc-cc-chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEE
Confidence 00 00 11222222 222333456789999999543110 0011111 11111 134566
Q ss_pred EEecCchH-----HHHhhcccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCch-HHHHHHh
Q 038861 138 IVTTRNRV-----VAERVGSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPL-AAKTLGG 209 (1165)
Q Consensus 138 iiTtR~~~-----~~~~~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~ 209 (1165)
|.||.... +... ....+.++..+.++..+++...+..... +-..+....+++.+.|.+- ++..+..
T Consensus 163 i~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~----~~~~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 163 LAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGS----PLDTEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp EEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSC----CSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 66776532 2222 2256778888888888887765432211 1112567789999999875 5555443
No 199
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.84 E-value=1.3e-05 Score=78.39 Aligned_cols=121 Identities=19% Similarity=0.199 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCC
Q 038861 4 KKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNV 83 (1165)
Q Consensus 4 ~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~ 83 (1165)
++.++.+.+++..-.. ...+.++|+|++|+||||||+.++........+ .+++++ ..++...+.......
T Consensus 20 ~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~~ 89 (180)
T 3ec2_A 20 NRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDEG 89 (180)
T ss_dssp HHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcCc
Confidence 3444555555543221 224579999999999999999998532212222 233433 334444443333221
Q ss_pred CCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCccchh--hhhcccCCC-CCCcEEEEecCch
Q 038861 84 TVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENYNDWE--LLNRPFKAG-TSGSKIIVTTRNR 144 (1165)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~--~l~~~~~~~-~~~~~iiiTtR~~ 144 (1165)
.. .... +.+. +.-+||+||++......|. .+...+... ..|..||+||...
T Consensus 90 ~~-----~~~~----~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 90 KD-----TKFL----KTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp CC-----SHHH----HHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred hH-----HHHH----HHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 11 1111 1222 4458999999743323332 222222111 2467788888643
No 200
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.83 E-value=5.5e-05 Score=86.18 Aligned_cols=142 Identities=15% Similarity=0.193 Sum_probs=75.9
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccC------Cc-eEEEEEcCCCCHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHF------EI-KAWTFVSEDFDVFRVT 73 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f------~~-~~w~~~~~~~~~~~~~ 73 (1165)
|||+++++.+...+.... ..-+.|+|++|+|||++|+.++.. +...+ .. .+.++.+
T Consensus 183 iGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~--------- 245 (468)
T 3pxg_A 183 IGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMG--------- 245 (468)
T ss_dssp CCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC------------
T ss_pred cCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEeeCC---------
Confidence 799999999999996532 234689999999999999999853 21111 11 1112221
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCchHHHH-----
Q 038861 74 KSILMSISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRVVAE----- 148 (1165)
Q Consensus 74 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~~~~----- 148 (1165)
....+. -..... ..+...-..++.++++|.- ......+...+.. ...++|.+|.......
T Consensus 246 ----~~~~g~--~e~~~~---~~~~~~~~~~~~iLfiD~~----~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~~ 310 (468)
T 3pxg_A 246 ----TKYRGE--FEDRLK---KVMDEIRQAGNIILFIDAA----IDASNILKPSLAR--GELQCIGATTLDEYRKYIEKD 310 (468)
T ss_dssp -------------CTTHH---HHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTTC
T ss_pred ----ccccch--HHHHHH---HHHHHHHhcCCeEEEEeCc----hhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhcC
Confidence 000000 011122 2222223356789999921 1122223232221 2356666655443111
Q ss_pred --hhcccceeeCCCCCHHHHHHHHhhcc
Q 038861 149 --RVGSVREYPLGELSKEDCLRVLTQHS 174 (1165)
Q Consensus 149 --~~~~~~~~~l~~l~~~e~~~lf~~~~ 174 (1165)
.......+.+++.+.++..+++...+
T Consensus 311 ~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 311 AALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 11233468999999999999998764
No 201
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.79 E-value=0.00027 Score=78.73 Aligned_cols=185 Identities=12% Similarity=0.062 Sum_probs=95.6
Q ss_pred CCchHHHHHHHHHHhcC----C--CCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRD----D--SRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTK 74 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~----~--~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~ 74 (1165)
||++..++.+.+++... . .......+-|.|+|++|+|||++|++++.. .... .+.+....-.+ .
T Consensus 118 iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~---~~~v~~~~l~~--~--- 187 (389)
T 3vfd_A 118 AGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNAT---FFNISAASLTS--K--- 187 (389)
T ss_dssp CSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCE---EEEECSCCC--------
T ss_pred CCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCc---EEEeeHHHhhc--c---
Confidence 68899999998877321 0 000112457899999999999999999742 2211 12222211110 0
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCc-----------cchhhhhccc---CC-CCCCcEEEE
Q 038861 75 SILMSISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENY-----------NDWELLNRPF---KA-GTSGSKIIV 139 (1165)
Q Consensus 75 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~-----------~~~~~l~~~~---~~-~~~~~~iii 139 (1165)
. ...........+...-...+.+|++|+++.... .....+...+ .. ......||.
T Consensus 188 -~---------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~ 257 (389)
T 3vfd_A 188 -Y---------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMG 257 (389)
T ss_dssp --------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEE
T ss_pred -c---------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEE
Confidence 0 001112222222222244668999999953200 0011111111 11 123455665
Q ss_pred ecCchH-HHHh-h-cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCch-HHHHHHh
Q 038861 140 TTRNRV-VAER-V-GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPL-AAKTLGG 209 (1165)
Q Consensus 140 TtR~~~-~~~~-~-~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~ 209 (1165)
||.... +... . .....+.+...+.++..+++...+..... .-..+....|++.+.|..- +|..+..
T Consensus 258 atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~----~l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 258 ATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS----PLTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp EESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC----CSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred ecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 665432 1111 1 12246888999999999998876533221 1123567789999988644 6655543
No 202
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.75 E-value=0.00037 Score=74.37 Aligned_cols=178 Identities=13% Similarity=0.063 Sum_probs=94.7
Q ss_pred CCchHHHHHHHHHHhcC-------CCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHH
Q 038861 1 YGRKKDKDEIVELLLRD-------DSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVT 73 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~-------~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~ 73 (1165)
+|.++.++++.+++... ...+-...+.|.|+|++|+|||++|++++.. ... -++.+. ...+.
T Consensus 18 ~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~-----~~i~v~----~~~l~ 86 (301)
T 3cf0_A 18 GGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQA-----NFISIK----GPELL 86 (301)
T ss_dssp CSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTC-----EEEEEC----HHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCC-----CEEEEE----hHHHH
Confidence 47777778877766421 0000123457899999999999999999853 221 122222 22332
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCc--------------cchhhhhcccCC--CCCCcEE
Q 038861 74 KSILMSISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENY--------------NDWELLNRPFKA--GTSGSKI 137 (1165)
Q Consensus 74 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~--------------~~~~~l~~~~~~--~~~~~~i 137 (1165)
.... +. ........+.......+.++++|+++.... .....+...+.. ...+..|
T Consensus 87 ~~~~----g~-----~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~v 157 (301)
T 3cf0_A 87 TMWF----GE-----SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFI 157 (301)
T ss_dssp HHHH----TT-----CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEE
T ss_pred hhhc----Cc-----hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEE
Confidence 2221 11 112223333344445789999999953100 001222222211 2245677
Q ss_pred EEecCchHHH-Hhh----cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchH
Q 038861 138 IVTTRNRVVA-ERV----GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLA 203 (1165)
Q Consensus 138 iiTtR~~~~~-~~~----~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 203 (1165)
|.||...+.. ..+ .-...+.++..+.++-.+++......... ....+ ...+++.+.|.|-+
T Consensus 158 i~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 158 IGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp EEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCC----HHHHHHTCSSCCHH
T ss_pred EEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-Cccch----HHHHHHHcCCCCHH
Confidence 7777655322 111 12246889999999988888776533221 11111 34566677787654
No 203
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.71 E-value=7.7e-05 Score=79.05 Aligned_cols=149 Identities=7% Similarity=0.005 Sum_probs=89.1
Q ss_pred CchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcc-hhccCCceEEEEEcC-CCCHHHHHHHHHHh
Q 038861 2 GRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDR-VRRHFEIKAWTFVSE-DFDVFRVTKSILMS 79 (1165)
Q Consensus 2 GR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~-~~~~f~~~~w~~~~~-~~~~~~~~~~i~~~ 79 (1165)
|-++.++.+...+..+. .....++|++|+||||+|+.+++... .........++.... ..++.++ +++...
T Consensus 1 g~~~~~~~L~~~i~~~~------~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~i-r~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE------GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDI-RTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTCS------SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHH-HHHHHH
T ss_pred ChHHHHHHHHHHHHCCC------CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHH-HHHHHH
Confidence 45667777888775432 46889999999999999999975211 111122334443321 2222222 122222
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCch-HHHHhhcccceeeC
Q 038861 80 ISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNR-VVAERVGSVREYPL 158 (1165)
Q Consensus 80 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~-~~~~~~~~~~~~~l 158 (1165)
....+ ..+++-++|+|+++..+......+...+...++.+.+|++|..+ .+....... .+++
T Consensus 74 ~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f 136 (305)
T 2gno_A 74 LNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRV 136 (305)
T ss_dssp HTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred Hhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeC
Confidence 21111 12456789999997766556666766666555677777766443 344444333 8999
Q ss_pred CCCCHHHHHHHHhhcc
Q 038861 159 GELSKEDCLRVLTQHS 174 (1165)
Q Consensus 159 ~~l~~~e~~~lf~~~~ 174 (1165)
.++++++..+.+....
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999888764
No 204
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.69 E-value=1.7e-05 Score=73.88 Aligned_cols=44 Identities=18% Similarity=0.164 Sum_probs=33.2
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCC
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
+|++..++++.+.+..... ...-|.|+|++|+|||++|+.+++.
T Consensus 7 iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 7 LGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp -CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred eeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHh
Confidence 6888999988888754221 1124789999999999999998864
No 205
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.68 E-value=4.1e-05 Score=94.73 Aligned_cols=151 Identities=16% Similarity=0.200 Sum_probs=77.1
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhc---cC-C-ceEEEEEcCCCCHHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRR---HF-E-IKAWTFVSEDFDVFRVTKS 75 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~---~f-~-~~~w~~~~~~~~~~~~~~~ 75 (1165)
|||+++++++++.+.... ..-+.++|++|+|||++|+.++....... .. . .++++.++.-
T Consensus 173 iGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l--------- 237 (854)
T 1qvr_A 173 IGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSL--------- 237 (854)
T ss_dssp CSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------
T ss_pred CCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHh---------
Confidence 799999999999996532 23478999999999999999985321100 01 1 2223322111
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHHh-c-CceEEEEEeCCCCCC--------ccchhhhhcccCCCCCCcEEEEecCchH
Q 038861 76 ILMSISNVTVNDNDLNSLQEKLEKEL-I-KKKFLLVLDDMWNEN--------YNDWELLNRPFKAGTSGSKIIVTTRNRV 145 (1165)
Q Consensus 76 i~~~l~~~~~~~~~~~~~~~~l~~~l-~-~~~~LlvlDdv~~~~--------~~~~~~l~~~~~~~~~~~~iiiTtR~~~ 145 (1165)
.. +... ....+.....+.+.+ . +++.+|++|+++... ......+...+ .. .+.++|.+|....
T Consensus 238 -~~---g~~~-~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l-~~-~~i~~I~at~~~~ 310 (854)
T 1qvr_A 238 -LA---GAKY-RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL-AR-GELRLIGATTLDE 310 (854)
T ss_dssp -------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHH-HT-TCCCEEEEECHHH
T ss_pred -hc---cCcc-chHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH-hC-CCeEEEEecCchH
Confidence 00 0000 112222233332333 2 367999999996532 01011121112 11 2344555554433
Q ss_pred HHH-----hh-cccceeeCCCCCHHHHHHHHhhc
Q 038861 146 VAE-----RV-GSVREYPLGELSKEDCLRVLTQH 173 (1165)
Q Consensus 146 ~~~-----~~-~~~~~~~l~~l~~~e~~~lf~~~ 173 (1165)
... .+ .....+.+++++.++..+++...
T Consensus 311 ~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 311 YREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred HhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 211 11 22346889999999999988643
No 206
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.68 E-value=0.00066 Score=73.63 Aligned_cols=173 Identities=16% Similarity=0.156 Sum_probs=88.9
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
+|++..++.+...+..... .+.....++|+|++|+||||||+.++.. ....| ...-+....
T Consensus 28 ~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~----~~~sg~~~~------------ 88 (334)
T 1in4_A 28 IGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNI----HVTSGPVLV------------ 88 (334)
T ss_dssp CSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCE----EEEETTTCC------------
T ss_pred cCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE----EEEechHhc------------
Confidence 5777777777666643200 0122356899999999999999999853 21111 111111100
Q ss_pred cCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCccchhhhhcccCCC--------C----------CCcEE-EEec
Q 038861 81 SNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENYNDWELLNRPFKAG--------T----------SGSKI-IVTT 141 (1165)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~--------~----------~~~~i-iiTt 141 (1165)
...+... +...+. ++.++++|+++.......+.+...+... + +...+ -.|+
T Consensus 89 --------~~~~l~~-~~~~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~ 158 (334)
T 1in4_A 89 --------KQGDMAA-ILTSLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT 158 (334)
T ss_dssp --------SHHHHHH-HHHHCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEES
T ss_pred --------CHHHHHH-HHHHcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecC
Confidence 0111111 111122 3346778887543322222221111000 0 11222 2344
Q ss_pred CchHHHHhh--cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCchHHHH
Q 038861 142 RNRVVAERV--GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPLAAKT 206 (1165)
Q Consensus 142 R~~~~~~~~--~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 206 (1165)
+...+.... .....+.+.+.+.++-.+++.+.+..... ....+.+..|+++++|.|-.+.-
T Consensus 159 ~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~----~~~~~~~~~ia~~~~G~~R~a~~ 221 (334)
T 1in4_A 159 RSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV----EIEDAAAEMIAKRSRGTPRIAIR 221 (334)
T ss_dssp CGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----CBCHHHHHHHHHTSTTCHHHHHH
T ss_pred CcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHhcCCChHHHHH
Confidence 443322222 11235789999999999999876532211 12237788999999999965443
No 207
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.68 E-value=5e-05 Score=76.01 Aligned_cols=118 Identities=15% Similarity=0.177 Sum_probs=60.2
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCC
Q 038861 6 DKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTV 85 (1165)
Q Consensus 6 ~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~ 85 (1165)
.++.+.+++..... ....+.+.|+|++|+|||+||+++++. .......++|+.+ ..+...+......
T Consensus 37 ~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~~--- 103 (202)
T 2w58_A 37 AIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYV------PELFRELKHSLQD--- 103 (202)
T ss_dssp HHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEH------HHHHHHHHHC------
T ss_pred HHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEh------HHHHHHHHHHhcc---
Confidence 44555666654321 112257899999999999999999853 3333345556653 2344444332211
Q ss_pred CCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCccchhh--hhc-ccCCC-CCCcEEEEecCc
Q 038861 86 NDNDLNSLQEKLEKELIKKKFLLVLDDMWNENYNDWEL--LNR-PFKAG-TSGSKIIVTTRN 143 (1165)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~--l~~-~~~~~-~~~~~iiiTtR~ 143 (1165)
.........+. .. -+||+||++......|.. +.. .+... ..+.++|+||..
T Consensus 104 --~~~~~~~~~~~----~~-~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 --QTMNEKLDYIK----KV-PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp --CCCHHHHHHHH----HS-SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred --chHHHHHHHhc----CC-CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 11222222222 22 389999996543333321 211 11111 235568888774
No 208
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.65 E-value=1.3e-05 Score=75.68 Aligned_cols=16 Identities=13% Similarity=0.571 Sum_probs=8.2
Q ss_pred cCCCCCCCEEEEeCCC
Q 038861 1005 LHNLHHLQELKVYGCP 1020 (1165)
Q Consensus 1005 ~~~l~~L~~L~L~~n~ 1020 (1165)
+.++++|++|+|++|.
T Consensus 81 L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCH 96 (176)
T ss_dssp GTTCSCCCEEEEESCT
T ss_pred hcCCCCCCEEEeCCCC
Confidence 3445555555555554
No 209
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.00047 Score=74.54 Aligned_cols=175 Identities=19% Similarity=0.110 Sum_probs=91.4
Q ss_pred CchHHHHHHHHHHhc----CC---CCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHH
Q 038861 2 GRKKDKDEIVELLLR----DD---SRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTK 74 (1165)
Q Consensus 2 GR~~~~~~l~~~l~~----~~---~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~ 74 (1165)
|-++.+++|.+.+.- .. ..+-..++=|.++|++|+|||.+|++++.. ....| +.+..+.-.
T Consensus 152 Gl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~------- 219 (405)
T 4b4t_J 152 GLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVSGAELV------- 219 (405)
T ss_dssp SCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEEGGGGS-------
T ss_pred CHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEEhHHhh-------
Confidence 566666666655431 00 001223456899999999999999999953 33222 223222110
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCc--------cc------hhhhhcccCC--CCCCcEEE
Q 038861 75 SILMSISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENY--------ND------WELLNRPFKA--GTSGSKII 138 (1165)
Q Consensus 75 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~--------~~------~~~l~~~~~~--~~~~~~ii 138 (1165)
.. .-......+...+...-+..+++|++|+++.... .+ ...+...+.. ...+..||
T Consensus 220 -------sk-~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vI 291 (405)
T 4b4t_J 220 -------QK-YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKII 291 (405)
T ss_dssp -------CS-STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEE
T ss_pred -------cc-ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEE
Confidence 00 0111112222223333356789999999965211 00 1112222221 23345566
Q ss_pred EecCchHH-----HHhhcccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCc
Q 038861 139 VTTRNRVV-----AERVGSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLP 201 (1165)
Q Consensus 139 iTtR~~~~-----~~~~~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 201 (1165)
.||-.++. .+.-+-...+.++..+.++-.++|+.+...... ...-+ ...|++.+.|.-
T Consensus 292 aATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 292 MATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL-TRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp EEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC-CSSCC----HHHHHHHCCSCC
T ss_pred eccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC-CccCC----HHHHHHHCCCCC
Confidence 66655432 111123468899999999999999876533221 11112 466778888753
No 210
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.61 E-value=0.00034 Score=75.62 Aligned_cols=47 Identities=28% Similarity=0.314 Sum_probs=33.9
Q ss_pred CCchHHHHHHHHHHhcC--CCC------CCCCcEEEEEEccCCchHHHHHHHHhC
Q 038861 1 YGRKKDKDEIVELLLRD--DSR------ADDGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~--~~~------~~~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+|+++.++.+...+... ... .......+.|+|++|+|||++|+.+++
T Consensus 18 ~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 18 IGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 68999999998877541 000 001234588999999999999999985
No 211
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.56 E-value=0.00024 Score=76.79 Aligned_cols=47 Identities=21% Similarity=0.356 Sum_probs=35.3
Q ss_pred CCchHHHHHHHHHHhcCC---CCCCCCcEEEEEEccCCchHHHHHHHHhC
Q 038861 1 YGRKKDKDEIVELLLRDD---SRADDGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~---~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+|++..++.+...+.... .........+.++|++|+|||++|+.++.
T Consensus 20 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 20 VGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp CSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH
Confidence 588888888888876431 10112345799999999999999999985
No 212
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.55 E-value=0.00037 Score=79.08 Aligned_cols=182 Identities=15% Similarity=0.104 Sum_probs=96.6
Q ss_pred CCchHHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDS-------RADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVT 73 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~-------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~ 73 (1165)
+|.+..++++.+++..... .+....+-|.|+|++|+|||++|+++++. .... .+.+.+.
T Consensus 207 ~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~---fv~vn~~--------- 272 (489)
T 3hu3_A 207 GGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGP--------- 272 (489)
T ss_dssp CSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSE---EEEEEHH---------
T ss_pred CCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCC---EEEEEch---------
Confidence 5788888888877753100 00123456899999999999999999853 2211 1223211
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCc------c-----chhhhhcccC--CCCCCcEEEEe
Q 038861 74 KSILMSISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENY------N-----DWELLNRPFK--AGTSGSKIIVT 140 (1165)
Q Consensus 74 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~------~-----~~~~l~~~~~--~~~~~~~iiiT 140 (1165)
++...+. ..........+....++++.+|+||+++.... . ....+...+. ....+.+||.|
T Consensus 273 -~l~~~~~-----g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaa 346 (489)
T 3hu3_A 273 -EIMSKLA-----GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAA 346 (489)
T ss_dssp -HHHTSCT-----THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEE
T ss_pred -Hhhhhhc-----chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEe
Confidence 1111110 11112223334444456788999999932110 0 0112222222 12235566667
Q ss_pred cCchH-HHHhh----cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCC-chHHHHH
Q 038861 141 TRNRV-VAERV----GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGL-PLAAKTL 207 (1165)
Q Consensus 141 tR~~~-~~~~~----~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~ 207 (1165)
|.... +...+ .-...+.+...+.++-.+++..++..... .... ...++++.+.|. +-.+..+
T Consensus 347 Tn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~----~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 347 TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDV----DLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp ESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTC----CHHHHHHTCTTCCHHHHHHH
T ss_pred cCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchh----hHHHHHHHccCCcHHHHHHH
Confidence 66542 21122 12246889999999999999887533221 1111 235577777774 5455544
No 213
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.52 E-value=0.00018 Score=87.91 Aligned_cols=145 Identities=16% Similarity=0.201 Sum_probs=77.4
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhcc----CCceEEEEEcCCCCHHHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRH----FEIKAWTFVSEDFDVFRVTKSI 76 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~w~~~~~~~~~~~~~~~i 76 (1165)
|||+++++++...+.... ..-+.++|++|+|||++|+.+++.. .... ....-++.+..
T Consensus 183 iG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~l-~~~~~p~~l~~~~~~~~~~----------- 244 (758)
T 3pxi_A 183 IGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQI-INNEVPEILRDKRVMTLDM----------- 244 (758)
T ss_dssp CCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHH-HSSCSCTTTSSCCEECC-------------
T ss_pred cCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHHH-hcCCCChhhcCCeEEEecc-----------
Confidence 799999999999996532 2347899999999999999998531 1111 00111111111
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCchHHHH------h-
Q 038861 77 LMSISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRVVAE------R- 149 (1165)
Q Consensus 77 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~~~~------~- 149 (1165)
+. .........+...+......++.+|++|.. . .....+...+. ....++|.||....... .
T Consensus 245 ----g~-~~~G~~e~~l~~~~~~~~~~~~~iLfiD~~--~--~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al 313 (758)
T 3pxi_A 245 ----GT-KYRGEFEDRLKKVMDEIRQAGNIILFIDAA--I--DASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAAL 313 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHH
T ss_pred ----cc-cccchHHHHHHHHHHHHHhcCCEEEEEcCc--h--hHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHH
Confidence 00 000011112222333333467789999922 1 11122322222 22456666665544111 0
Q ss_pred hcccceeeCCCCCHHHHHHHHhhcc
Q 038861 150 VGSVREYPLGELSKEDCLRVLTQHS 174 (1165)
Q Consensus 150 ~~~~~~~~l~~l~~~e~~~lf~~~~ 174 (1165)
......+.++..+.++..+++....
T Consensus 314 ~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 314 ERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1123568999999999999998654
No 214
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.50 E-value=0.0081 Score=66.75 Aligned_cols=83 Identities=13% Similarity=0.000 Sum_probs=40.6
Q ss_pred cccCCCCCCCEEEEeCCCCCccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCCCcccCCC--CCCC
Q 038861 1003 AGLHNLHHLQELKVYGCPNLESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRSLVSFPED--GFPT 1080 (1165)
Q Consensus 1003 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~--~~~~ 1080 (1165)
..|.++.+|+.+.+..+ +......+|..+++|+.+.+.++.+...-...|.++.+|+.+.+..+ + ..++.. ..+.
T Consensus 257 ~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l-~~I~~~aF~~C~ 333 (379)
T 4h09_A 257 FLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-L-KTIQVYAFKNCK 333 (379)
T ss_dssp TTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-C-CEECTTTTTTCT
T ss_pred cccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-c-cEEHHHHhhCCC
Confidence 34555555555555432 22223335555556666665555444444455555566666555432 2 333332 3445
Q ss_pred CcceEEEe
Q 038861 1081 NLESLEVH 1088 (1165)
Q Consensus 1081 ~L~~L~l~ 1088 (1165)
+|+.+.+.
T Consensus 334 ~L~~i~ip 341 (379)
T 4h09_A 334 ALSTISYP 341 (379)
T ss_dssp TCCCCCCC
T ss_pred CCCEEEEC
Confidence 55555553
No 215
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.48 E-value=3.5e-05 Score=79.15 Aligned_cols=65 Identities=12% Similarity=0.020 Sum_probs=34.6
Q ss_pred CCCCCCCEEEEeCCCCCc--cccCCCCCCCCcCeEEeecCCCCCcCCcccCCCC--CCceeeeccCCCCcc
Q 038861 1006 HNLHHLQELKVYGCPNLE--SFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLT--SLLHLEIGWCRSLVS 1072 (1165)
Q Consensus 1006 ~~l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~--~L~~L~l~~n~~~~~ 1072 (1165)
.++++|++|+|++|.+.+ .+|..+..+++|+.|+|++|.+.+. ..+..+. +|++|+|++|++.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~ 235 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDT 235 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccc
Confidence 346677777777777655 3333344556666666666665543 1122222 555555555555433
No 216
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.0015 Score=72.01 Aligned_cols=175 Identities=15% Similarity=0.143 Sum_probs=91.5
Q ss_pred CchHHHHHHHHHHhc---C-C---CCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHH
Q 038861 2 GRKKDKDEIVELLLR---D-D---SRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTK 74 (1165)
Q Consensus 2 GR~~~~~~l~~~l~~---~-~---~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~ 74 (1165)
|-++.+++|.+.+.- . . ..+-..++=|.++|++|+|||++|+++++. ....| +.+..+.-.
T Consensus 185 Gl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~l~------- 252 (437)
T 4b4t_L 185 GLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSPASGIV------- 252 (437)
T ss_dssp SCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGTC-------
T ss_pred ChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehhhhc-------
Confidence 566667766655531 0 0 002234567899999999999999999953 32222 223222111
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCc--------cc------hhhhhcccC--CCCCCcEEE
Q 038861 75 SILMSISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENY--------ND------WELLNRPFK--AGTSGSKII 138 (1165)
Q Consensus 75 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~--------~~------~~~l~~~~~--~~~~~~~ii 138 (1165)
. .........+...+...-...+++|++|+++..-. .+ ...+...+. ....+..||
T Consensus 253 -------s-k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI 324 (437)
T 4b4t_L 253 -------D-KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKII 324 (437)
T ss_dssp -------C-SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEE
T ss_pred -------c-ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEE
Confidence 0 00111111222223333356789999999964210 00 112222221 123355677
Q ss_pred EecCchHHHH-hh-c---ccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCc
Q 038861 139 VTTRNRVVAE-RV-G---SVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLP 201 (1165)
Q Consensus 139 iTtR~~~~~~-~~-~---~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 201 (1165)
.||-..+... .+ + -...+.++..+.++-.++|..+...... ...-+ ...+++.+.|.-
T Consensus 325 ~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 325 MATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp EEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCC----HHHHHHTCCSCC
T ss_pred EecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhCCCCC
Confidence 7776554222 11 1 2356888888999888888876533221 11111 456777887753
No 217
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.43 E-value=0.00037 Score=79.30 Aligned_cols=97 Identities=9% Similarity=0.044 Sum_probs=57.1
Q ss_pred EEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEe---------cC----chHH-HHhhcccceeeCCCCCHHHHHHHHh
Q 038861 106 FLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVT---------TR----NRVV-AERVGSVREYPLGELSKEDCLRVLT 171 (1165)
Q Consensus 106 ~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiT---------tR----~~~~-~~~~~~~~~~~l~~l~~~e~~~lf~ 171 (1165)
-++++|+++.-+......+...+.......-|+.| |. ...+ .........+.+.+++.+|..+++.
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~ 376 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIK 376 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCCEEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHH
Confidence 38999999776655666666666554444322244 32 1111 1111222457999999999999998
Q ss_pred hcccCCCCCCCCcchHHHHHHHHHHc-CCCchHHHH
Q 038861 172 QHSLGATDFNTHQSLKEVREKIAMKC-KGLPLAAKT 206 (1165)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~Plal~~ 206 (1165)
..+..... .-..+.+..|++.+ +|.|.....
T Consensus 377 ~~~~~~~~----~~~~~~~~~i~~~a~~g~~r~a~~ 408 (456)
T 2c9o_A 377 IRAQTEGI----NISEEALNHLGEIGTKTTLRYSVQ 408 (456)
T ss_dssp HHHHHHTC----CBCHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHhCC----CCCHHHHHHHHHHccCCCHHHHHH
Confidence 76521111 11236677788888 777764433
No 218
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.42 E-value=0.0012 Score=68.84 Aligned_cols=181 Identities=14% Similarity=0.118 Sum_probs=88.7
Q ss_pred CCchHHHHHHHHHHh---cCCC---CCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHH
Q 038861 1 YGRKKDKDEIVELLL---RDDS---RADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTK 74 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~---~~~~---~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~ 74 (1165)
+|.++.++++.+.+. .... .+....+-+.|+|++|+||||+|+.++.. .... .+.+....-.+
T Consensus 15 ~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~i~~~~~~~------ 83 (257)
T 1lv7_A 15 AGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVP---FFTISGSDFVE------ 83 (257)
T ss_dssp CSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCC---EEEECSCSSTT------
T ss_pred cCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCC---EEEEeHHHHHH------
Confidence 466766666655432 1100 01112345889999999999999999853 2211 12232211100
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCc----------c----chhhhhcccCC--CCCCcEEE
Q 038861 75 SILMSISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENY----------N----DWELLNRPFKA--GTSGSKII 138 (1165)
Q Consensus 75 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~----------~----~~~~l~~~~~~--~~~~~~ii 138 (1165)
.............+.......+.++++|+++.... . ....+...+.. ...+..||
T Consensus 84 ---------~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI 154 (257)
T 1lv7_A 84 ---------MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVI 154 (257)
T ss_dssp ---------SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEE
T ss_pred ---------HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEE
Confidence 00112223333344444455678999999832100 0 01112111111 12355677
Q ss_pred EecCchH-HHHhh----cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCC-CchHHHH
Q 038861 139 VTTRNRV-VAERV----GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKG-LPLAAKT 206 (1165)
Q Consensus 139 iTtR~~~-~~~~~----~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~ 206 (1165)
.||...+ +.... .-...+.++..+.++-.+++........ ..+. .....++..+.| .+--|..
T Consensus 155 ~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~-l~~~----~~~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 155 AATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-LAPD----IDAAIIARGTPGFSGADLAN 223 (257)
T ss_dssp EEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTT----CCHHHHHHTCTTCCHHHHHH
T ss_pred EeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC-CCcc----ccHHHHHHHcCCCCHHHHHH
Confidence 7776543 21111 1124677888888888888776542211 1111 113456777777 5655543
No 219
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.42 E-value=0.00084 Score=82.28 Aligned_cols=153 Identities=17% Similarity=0.234 Sum_probs=84.4
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhc----cCCceEEEEEcCCCCHHHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRR----HFEIKAWTFVSEDFDVFRVTKSI 76 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~w~~~~~~~~~~~~~~~i 76 (1165)
|||+++++++.+.+.... ..-+.|+|++|+|||++|+.++....... .....+|. +.-. ..
T Consensus 189 iGr~~~i~~l~~~l~~~~------~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~-~~~~-~l------- 253 (758)
T 1r6b_X 189 IGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS-LDIG-SL------- 253 (758)
T ss_dssp CSCHHHHHHHHHHHTSSS------SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE-CCCC----------
T ss_pred cCCHHHHHHHHHHHhccC------CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE-EcHH-HH-------
Confidence 799999999999996432 34578999999999999999985321100 11222221 1100 00
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHHh-cCceEEEEEeCCCCCC--------ccchhhhhcccCCCCCCcEEEEecCchHHH
Q 038861 77 LMSISNVTVNDNDLNSLQEKLEKEL-IKKKFLLVLDDMWNEN--------YNDWELLNRPFKAGTSGSKIIVTTRNRVVA 147 (1165)
Q Consensus 77 ~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~--------~~~~~~l~~~~~~~~~~~~iiiTtR~~~~~ 147 (1165)
+.... .....+.....+.+.+ ..++.+|++|+++... ..+...+...+... .+.++|.+|...+..
T Consensus 254 ---~~~~~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~-~~~~~I~at~~~~~~ 328 (758)
T 1r6b_X 254 ---LAGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEFS 328 (758)
T ss_dssp ----CCCC-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS-CCCEEEEEECHHHHH
T ss_pred ---hcccc-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC-CCeEEEEEeCchHHh
Confidence 00011 1123333333333333 3457899999996531 12222222233222 345666666654422
Q ss_pred Hhh-------cccceeeCCCCCHHHHHHHHhhc
Q 038861 148 ERV-------GSVREYPLGELSKEDCLRVLTQH 173 (1165)
Q Consensus 148 ~~~-------~~~~~~~l~~l~~~e~~~lf~~~ 173 (1165)
... .....+.+.+.+.++..+++...
T Consensus 329 ~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l 361 (758)
T 1r6b_X 329 NIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_dssp CCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHH
T ss_pred hhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHH
Confidence 111 12246889999999988888754
No 220
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.42 E-value=1.7e-05 Score=77.77 Aligned_cols=90 Identities=16% Similarity=0.072 Sum_probs=45.3
Q ss_pred ccCCCCCCCEEEEeCCCCCc----cccCCCCCCCCcCeEEeecCCCCCc----CCcccCCCCCCceeee--ccCCCCcc-
Q 038861 1004 GLHNLHHLQELKVYGCPNLE----SFPEGGLPSTKLTKLTIGYCENLKA----LPNCMHNLTSLLHLEI--GWCRSLVS- 1072 (1165)
Q Consensus 1004 ~~~~l~~L~~L~L~~n~~~~----~~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l--~~n~~~~~- 1072 (1165)
.+...++|++|+|++|.+.. .+...+...++|++|+|++|.+... +...+...++|++|++ ++|.+...
T Consensus 60 ~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g 139 (185)
T 1io0_A 60 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV 139 (185)
T ss_dssp HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH
T ss_pred HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHH
Confidence 34444556666666665432 1222233335566666666655432 2334555566666666 55665221
Q ss_pred ---cCCC-CCCCCcceEEEecCCCC
Q 038861 1073 ---FPED-GFPTNLESLEVHDLKIS 1093 (1165)
Q Consensus 1073 ---~p~~-~~~~~L~~L~l~~n~~~ 1093 (1165)
+... ...++|++|++++|.+.
T Consensus 140 ~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 140 EMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCcCEEeccCCCCC
Confidence 1111 23356777777777653
No 221
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.41 E-value=9e-05 Score=69.11 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.7
Q ss_pred EEEEEEccCCchHHHHHHHHhCC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
..++|+|+.|+|||||++.++..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999853
No 222
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.00083 Score=73.61 Aligned_cols=175 Identities=18% Similarity=0.143 Sum_probs=90.3
Q ss_pred CchHHHHHHHHHHhc----CC---CCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHH
Q 038861 2 GRKKDKDEIVELLLR----DD---SRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTK 74 (1165)
Q Consensus 2 GR~~~~~~l~~~l~~----~~---~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~ 74 (1165)
|-++.+++|.+.+.- .. ..+-..++=|.++|++|+|||.+|++++.. ....| +.+..+.
T Consensus 213 Gl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~f---i~vs~s~--------- 278 (467)
T 4b4t_H 213 GCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDATF---IRVIGSE--------- 278 (467)
T ss_dssp TCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCEE---EEEEGGG---------
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCCe---EEEEhHH---------
Confidence 566667777654421 00 002234567899999999999999999953 33222 2232221
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCc------c--c------hhhhhcccCC--CCCCcEEE
Q 038861 75 SILMSISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENY------N--D------WELLNRPFKA--GTSGSKII 138 (1165)
Q Consensus 75 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~------~--~------~~~l~~~~~~--~~~~~~ii 138 (1165)
+... .-......+...+...-...+++|++|+++.... . . ...+...+.. ...+..||
T Consensus 279 -----L~sk-~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVI 352 (467)
T 4b4t_H 279 -----LVQK-YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVM 352 (467)
T ss_dssp -----GCCC-SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEE
T ss_pred -----hhcc-cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEE
Confidence 1110 0111112222233333356789999999964211 0 0 0111111211 22344566
Q ss_pred EecCchHHH-Hhh----cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCc
Q 038861 139 VTTRNRVVA-ERV----GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLP 201 (1165)
Q Consensus 139 iTtR~~~~~-~~~----~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 201 (1165)
.||-..+.. ..+ +-...++++..+.++-.++|+.+...... ...-+ ...|++.|.|.-
T Consensus 353 aATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l-~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 353 FATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV-ERGIR----WELISRLCPNST 415 (467)
T ss_dssp EECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB-CSSCC----HHHHHHHCCSCC
T ss_pred eCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC-CCCCC----HHHHHHHCCCCC
Confidence 666543211 111 23467889999999999999876533221 11111 456777888753
No 223
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.41 E-value=1.5e-05 Score=78.14 Aligned_cols=114 Identities=16% Similarity=0.040 Sum_probs=72.5
Q ss_pred cccCCCCCCCEEEEeCC-CCCc----cccCCCCCCCCcCeEEeecCCCCCc----CCcccCCCCCCceeeeccCCCCcc-
Q 038861 1003 AGLHNLHHLQELKVYGC-PNLE----SFPEGGLPSTKLTKLTIGYCENLKA----LPNCMHNLTSLLHLEIGWCRSLVS- 1072 (1165)
Q Consensus 1003 ~~~~~l~~L~~L~L~~n-~~~~----~~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~- 1072 (1165)
..+...++|++|+|++| .+.. .+...+...++|++|+|++|.+... +...+...++|++|+|++|.+...
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 44566788888888888 6543 2334455567899999999887542 233455567888888888887321
Q ss_pred ---cCCC-CCCCCcceEEE--ecCCCCCcc---cccccccCCCCcEEEEecCC
Q 038861 1073 ---FPED-GFPTNLESLEV--HDLKISKPL---FEWGLNKFSSLRELQITGGC 1116 (1165)
Q Consensus 1073 ---~p~~-~~~~~L~~L~l--~~n~~~~~~---~~~~~~~l~~L~~L~l~~n~ 1116 (1165)
+... ...++|++|++ ++|.+.... ....+...++|++|++++|.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 1222 34567888888 778776422 11224445667777776653
No 224
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.36 E-value=0.0002 Score=75.20 Aligned_cols=44 Identities=23% Similarity=0.163 Sum_probs=32.9
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCC
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
||++..+.++.+.+..... ....|.|+|++|+|||++|+.+++.
T Consensus 9 ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 9 LGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp -CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred eeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 5888888888877754221 1135789999999999999999854
No 225
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.35 E-value=0.00037 Score=74.22 Aligned_cols=43 Identities=16% Similarity=0.212 Sum_probs=34.2
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhC
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
||+...+.++.+.+..... ....|.|+|.+|+|||++|+.+++
T Consensus 5 ig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 5 IGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp CCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHH
Confidence 6888999999888865322 123578999999999999999985
No 226
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.35 E-value=5.4e-05 Score=77.78 Aligned_cols=78 Identities=14% Similarity=0.092 Sum_probs=57.6
Q ss_pred Cccceeeeecccccc--cCCcccCCCCCCCEEEEeCCCCCccc-cCCCCCCCCcCeEEeecCCCCCcCCc-------ccC
Q 038861 985 TSLEVIAISYLENLK--SLPAGLHNLHHLQELKVYGCPNLESF-PEGGLPSTKLTKLTIGYCENLKALPN-------CMH 1054 (1165)
Q Consensus 985 ~~L~~L~L~~n~~~~--~~p~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~-------~~~ 1054 (1165)
++|+.|+|++|.+.+ .+|..+..+++|+.|+|++|.+.+.- ...+..+ +|++|+|++|++.+.+|. .+.
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~ 248 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRE 248 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHHH
Confidence 678888888888876 45566778899999999999877641 1223333 899999999998776552 467
Q ss_pred CCCCCceee
Q 038861 1055 NLTSLLHLE 1063 (1165)
Q Consensus 1055 ~l~~L~~L~ 1063 (1165)
.+++|+.||
T Consensus 249 ~~P~L~~LD 257 (267)
T 3rw6_A 249 RFPKLLRLD 257 (267)
T ss_dssp HCTTCCEES
T ss_pred HCcccCeEC
Confidence 788888876
No 227
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.33 E-value=7.1e-05 Score=78.82 Aligned_cols=177 Identities=15% Similarity=0.110 Sum_probs=84.8
Q ss_pred CCchHHHHHHHHHHhcCCC------CCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDS------RADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTK 74 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~ 74 (1165)
+|.++.++.+.+.+..-.. .+....+-+.|+|++|+|||++|+.++.. ....|- .+....-.
T Consensus 14 ~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~~---~v~~~~~~------- 81 (268)
T 2r62_A 14 AGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AHVPFF---SMGGSSFI------- 81 (268)
T ss_dssp SSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH--HTCCCC---CCCSCTTT-------
T ss_pred CCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCEE---EechHHHH-------
Confidence 5677777777665531000 00011223789999999999999999853 222221 11111100
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCcc---------------chhhhhcccCC---CCCCcE
Q 038861 75 SILMSISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENYN---------------DWELLNRPFKA---GTSGSK 136 (1165)
Q Consensus 75 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~---------------~~~~l~~~~~~---~~~~~~ 136 (1165)
....... ...... .+......++.+|++|+++..... ....+...+.. ......
T Consensus 82 ---~~~~~~~--~~~~~~---~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 153 (268)
T 2r62_A 82 ---EMFVGLG--ASRVRD---LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVI 153 (268)
T ss_dssp ---TSCSSSC--SSSSST---THHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCE
T ss_pred ---HhhcchH--HHHHHH---HHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEE
Confidence 0010000 011111 122222345689999999542111 11222222221 112356
Q ss_pred EEEecCchHHHH-hh----cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCch
Q 038861 137 IIVTTRNRVVAE-RV----GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLPL 202 (1165)
Q Consensus 137 iiiTtR~~~~~~-~~----~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 202 (1165)
||.||....... .. .-...+.++..+.++-.+++...+..... .... ....+++.+.|.|-
T Consensus 154 vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~----~~~~la~~~~g~~g 219 (268)
T 2r62_A 154 VLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKL-ANDV----NLQEVAKLTAGLAG 219 (268)
T ss_dssp EEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCC-CSSC----CTTTTTSSSCSSCH
T ss_pred EEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCC-CCcc----CHHHHHHHcCCCCH
Confidence 777776553211 11 11246788888888888888766432211 1111 12346666777654
No 228
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.21 E-value=0.0016 Score=70.66 Aligned_cols=174 Identities=14% Similarity=0.097 Sum_probs=88.9
Q ss_pred CchHHHHHHHHHHhc----CC---CCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHH
Q 038861 2 GRKKDKDEIVELLLR----DD---SRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTK 74 (1165)
Q Consensus 2 GR~~~~~~l~~~l~~----~~---~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~ 74 (1165)
|-++.+++|.+.+.- .. ..+-..++=|.++|++|+|||.+|++++.. ....| +.+..+.
T Consensus 186 Gld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~--------- 251 (437)
T 4b4t_I 186 GLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSE--------- 251 (437)
T ss_dssp SCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGG---------
T ss_pred cHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHH---------
Confidence 566667766655431 00 002234567899999999999999999953 33222 1222211
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCc--------c--c----hhhhhcccC--CCCCCcEEE
Q 038861 75 SILMSISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENY--------N--D----WELLNRPFK--AGTSGSKII 138 (1165)
Q Consensus 75 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~--------~--~----~~~l~~~~~--~~~~~~~ii 138 (1165)
+... .-......+...+...-+..+++|++|+++.... . . ...+...+. ....+..||
T Consensus 252 -----l~sk-~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVI 325 (437)
T 4b4t_I 252 -----LIQK-YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVI 325 (437)
T ss_dssp -----GCCS-SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEE
T ss_pred -----hhhc-cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEE
Confidence 1110 0111111122222233346789999999854210 0 0 111211111 122345566
Q ss_pred EecCchHHHH-hh----cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCC
Q 038861 139 VTTRNRVVAE-RV----GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGL 200 (1165)
Q Consensus 139 iTtR~~~~~~-~~----~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 200 (1165)
.||-..+..+ .+ .-...+.++..+.++-.++|..+...... ...-+ ...|++.+.|.
T Consensus 326 aATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l-~~dvd----l~~LA~~T~Gf 387 (437)
T 4b4t_I 326 MATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNL-SEDVN----LETLVTTKDDL 387 (437)
T ss_dssp EEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCB-CSCCC----HHHHHHHCCSC
T ss_pred EeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCC-CCcCC----HHHHHHhCCCC
Confidence 6665544322 11 12246888888999888888876533221 11112 45677788775
No 229
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.18 E-value=0.0046 Score=68.07 Aligned_cols=174 Identities=14% Similarity=0.115 Sum_probs=85.0
Q ss_pred CchHHHHHHHHHHhc---CC----CCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHH
Q 038861 2 GRKKDKDEIVELLLR---DD----SRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTK 74 (1165)
Q Consensus 2 GR~~~~~~l~~~l~~---~~----~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~ 74 (1165)
|-++.+++|.+.+.- .. ..+-..++=|.++|++|+|||++|+++++. ....| +.+..+.-.
T Consensus 176 Gl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~--~~~~~---~~v~~~~l~------- 243 (428)
T 4b4t_K 176 GLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS--TKAAF---IRVNGSEFV------- 243 (428)
T ss_dssp SCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH--HTCEE---EEEEGGGTC-------
T ss_pred cHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCCe---EEEecchhh-------
Confidence 566777777665531 00 002234566899999999999999999953 32222 223322111
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCC--------C--ccc----hhhhhcccC--CCCCCcEEE
Q 038861 75 SILMSISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNE--------N--YND----WELLNRPFK--AGTSGSKII 138 (1165)
Q Consensus 75 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--------~--~~~----~~~l~~~~~--~~~~~~~ii 138 (1165)
. ..-......+...+...-...++++++|+++.. . ... ...+...+. ....+..||
T Consensus 244 -------~-~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI 315 (428)
T 4b4t_K 244 -------H-KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVI 315 (428)
T ss_dssp -------C-SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEE
T ss_pred -------c-cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEE
Confidence 0 001111122222333333567899999998320 0 000 111222221 123455666
Q ss_pred EecCchHHH-Hhh----cccceeeCCCC-CHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCC
Q 038861 139 VTTRNRVVA-ERV----GSVREYPLGEL-SKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGL 200 (1165)
Q Consensus 139 iTtR~~~~~-~~~----~~~~~~~l~~l-~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 200 (1165)
.||-..+.. ..+ +-...++++.+ +.++-.++|..+..+... .+.-+ ...+++.+.|.
T Consensus 316 ~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l-~~~~d----l~~lA~~t~G~ 378 (428)
T 4b4t_K 316 MATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSL-APEAD----LDSLIIRNDSL 378 (428)
T ss_dssp EEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCB-CTTCC----HHHHHHHTTTC
T ss_pred EecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHHCCCC
Confidence 677654311 111 12245777655 555556666655432221 11112 45677788775
No 230
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.18 E-value=0.00036 Score=76.82 Aligned_cols=174 Identities=16% Similarity=0.162 Sum_probs=88.7
Q ss_pred CchHHHHHHHHHHhc----CC---CCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHH
Q 038861 2 GRKKDKDEIVELLLR----DD---SRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTK 74 (1165)
Q Consensus 2 GR~~~~~~l~~~l~~----~~---~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~ 74 (1165)
|-++.+++|.+.+.- .. ..+-..++-|.++||+|+|||.+|++++.. ....| +.+..+.
T Consensus 185 Gl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~f---~~v~~s~--------- 250 (434)
T 4b4t_M 185 GLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNATF---LKLAAPQ--------- 250 (434)
T ss_dssp SCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGG---------
T ss_pred cHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCCE---EEEehhh---------
Confidence 666777777655431 10 002234567899999999999999999953 32222 2222211
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCC-----Ccc-----c----hhhhhcccCC--CCCCcEEE
Q 038861 75 SILMSISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNE-----NYN-----D----WELLNRPFKA--GTSGSKII 138 (1165)
Q Consensus 75 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-----~~~-----~----~~~l~~~~~~--~~~~~~ii 138 (1165)
+.... .......+...+...-...+++|++|+++.. ... . ...+...+.. ...+..||
T Consensus 251 -----l~~~~-vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVI 324 (434)
T 4b4t_M 251 -----LVQMY-IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVL 324 (434)
T ss_dssp -----GCSSC-SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEE
T ss_pred -----hhhcc-cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEE
Confidence 11100 0111111112222222346899999998421 000 0 1112222222 22345666
Q ss_pred EecCchHHHH-hh----cccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCC
Q 038861 139 VTTRNRVVAE-RV----GSVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGL 200 (1165)
Q Consensus 139 iTtR~~~~~~-~~----~~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 200 (1165)
.||..++... .+ +-...+.++..+.++-.++|..+...... ...-+ ...|++.+.|.
T Consensus 325 aaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 325 AATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDIN----WQELARSTDEF 386 (434)
T ss_dssp EECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCC----HHHHHHHCSSC
T ss_pred EeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCC----HHHHHHhCCCC
Confidence 6776553222 11 12357889989999888888766422211 11111 45677788775
No 231
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.17 E-value=0.0025 Score=71.52 Aligned_cols=176 Identities=13% Similarity=0.104 Sum_probs=90.2
Q ss_pred CCchHHHHHHHHHHhc---CC---CCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHH
Q 038861 1 YGRKKDKDEIVELLLR---DD---SRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTK 74 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~---~~---~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~ 74 (1165)
+|.++.++++.+.+.. .. ..+...++-|.|+|++|+|||+||+.++.. .... .+.+..+.-...
T Consensus 19 ~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~---f~~is~~~~~~~----- 88 (476)
T 2ce7_A 19 GGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVP---FFHISGSDFVEL----- 88 (476)
T ss_dssp CSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCC---EEEEEGGGTTTC-----
T ss_pred CCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCC---eeeCCHHHHHHH-----
Confidence 4667766666554431 10 001112334889999999999999999853 2211 122332221110
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCcc--------------chhhhhcccCC--CCCCcEEE
Q 038861 75 SILMSISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENYN--------------DWELLNRPFKA--GTSGSKII 138 (1165)
Q Consensus 75 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~--------------~~~~l~~~~~~--~~~~~~ii 138 (1165)
. ...........+.+.....+.+|++|+++..... ....+...+.. ...+..||
T Consensus 89 -----~-----~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVI 158 (476)
T 2ce7_A 89 -----F-----VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVM 158 (476)
T ss_dssp -----C-----TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEE
T ss_pred -----H-----hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEE
Confidence 0 0011122223344444567899999999542110 11222222211 12356677
Q ss_pred EecCchHHHH-hh-c---ccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCc
Q 038861 139 VTTRNRVVAE-RV-G---SVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLP 201 (1165)
Q Consensus 139 iTtR~~~~~~-~~-~---~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 201 (1165)
.||...+... .. . -...+.++..+.++-.+++..++..... .+..+ ...+++.+.|..
T Consensus 159 aaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l-~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 159 AATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL-AEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCC
T ss_pred EecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC-cchhh----HHHHHHhcCCCc
Confidence 7776654322 11 1 1236788888888888888766533221 11111 345788888876
No 232
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.14 E-value=0.00042 Score=84.70 Aligned_cols=152 Identities=16% Similarity=0.174 Sum_probs=80.6
Q ss_pred CCchHHHHHHHHHHhcCCCC---CCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHH
Q 038861 1 YGRKKDKDEIVELLLRDDSR---ADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSIL 77 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~---~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~ 77 (1165)
||.+..++.+...+...... ...+...+.++|++|+|||++|+.+++. ....-...+.++++...+.
T Consensus 494 iGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~-------- 563 (758)
T 3pxi_A 494 IGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEK-------- 563 (758)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSS--------
T ss_pred cChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhcccc--------
Confidence 68888888888888643211 1123347899999999999999999853 2222223444554332110
Q ss_pred HhccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCccchhhhhcccCC-----------CCCCcEEEEecCc---
Q 038861 78 MSISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENYNDWELLNRPFKA-----------GTSGSKIIVTTRN--- 143 (1165)
Q Consensus 78 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~~~~-----------~~~~~~iiiTtR~--- 143 (1165)
... ........++ +...-+|+||+++.........+...+.. .....+||+||..
T Consensus 564 ------~~~--~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~ 632 (758)
T 3pxi_A 564 ------HST--SGGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGAS 632 (758)
T ss_dssp ------CCC--C---CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTT
T ss_pred ------ccc--ccchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChh
Confidence 000 0011111122 12345899999976654444444333221 1235688888872
Q ss_pred --hHH----HHhh-----c-ccceeeCCCCCHHHHHHHHhhc
Q 038861 144 --RVV----AERV-----G-SVREYPLGELSKEDCLRVLTQH 173 (1165)
Q Consensus 144 --~~~----~~~~-----~-~~~~~~l~~l~~~e~~~lf~~~ 173 (1165)
..+ ...+ . ....+.+.++++++-.+++...
T Consensus 633 ~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 633 EKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp CCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 111 1111 1 1246778888888777666543
No 233
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.01 E-value=0.0025 Score=67.43 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=22.3
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCC
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
..++.+.++|++|+|||+||+++++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567899999999999999999953
No 234
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.98 E-value=0.0024 Score=76.04 Aligned_cols=175 Identities=16% Similarity=0.155 Sum_probs=92.4
Q ss_pred CchHHHHHHHHHHh----cCC---CCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHH
Q 038861 2 GRKKDKDEIVELLL----RDD---SRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTK 74 (1165)
Q Consensus 2 GR~~~~~~l~~~l~----~~~---~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~ 74 (1165)
|-++.+++|.+.+. ... ..+-..++-|.++|++|+|||+||++++.. ...+| +.+...
T Consensus 208 Gl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~---------- 272 (806)
T 3cf2_A 208 GCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP---------- 272 (806)
T ss_dssp SCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHH----------
T ss_pred CHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhH----------
Confidence 55566666665543 111 112345677999999999999999999964 22222 223211
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCc------cc-----hhhhhcccCC--CCCCcEEEEec
Q 038861 75 SILMSISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENY------ND-----WELLNRPFKA--GTSGSKIIVTT 141 (1165)
Q Consensus 75 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~------~~-----~~~l~~~~~~--~~~~~~iiiTt 141 (1165)
++... ........+...+....+..+.+|++|+++.... .+ ...+...+.. ...+..||.||
T Consensus 273 ~l~sk-----~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaT 347 (806)
T 3cf2_A 273 EIMSK-----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAAT 347 (806)
T ss_dssp HHHSS-----CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEEC
T ss_pred Hhhcc-----cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEec
Confidence 11111 1111222333334444466789999999954211 01 1112111111 12244555566
Q ss_pred CchH-HHHhhc----ccceeeCCCCCHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCc
Q 038861 142 RNRV-VAERVG----SVREYPLGELSKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLP 201 (1165)
Q Consensus 142 R~~~-~~~~~~----~~~~~~l~~l~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 201 (1165)
...+ +...+. -...++++..+.++-.++|..+...... ... .....|++.+.|.-
T Consensus 348 N~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~-~~d----vdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 348 NRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADD----VDLEQVANETHGHV 407 (806)
T ss_dssp SSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE-CTT----CCHHHHHHHCCSCC
T ss_pred CChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC-Ccc----cCHHHHHHhcCCCC
Confidence 5443 222221 2357889999999999999877533221 111 12456888888764
No 235
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.90 E-value=0.0015 Score=70.98 Aligned_cols=147 Identities=15% Similarity=0.091 Sum_probs=78.9
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
+|+++.++.+...+.... -+.++|++|+|||++|+.+++. .... ...+.........++.. ..
T Consensus 30 ~g~~~~~~~l~~~l~~~~--------~vll~G~pGtGKT~la~~la~~--~~~~---~~~i~~~~~~~~~~l~g----~~ 92 (331)
T 2r44_A 30 VGQKYMINRLLIGICTGG--------HILLEGVPGLAKTLSVNTLAKT--MDLD---FHRIQFTPDLLPSDLIG----TM 92 (331)
T ss_dssp CSCHHHHHHHHHHHHHTC--------CEEEESCCCHHHHHHHHHHHHH--TTCC---EEEEECCTTCCHHHHHE----EE
T ss_pred eCcHHHHHHHHHHHHcCC--------eEEEECCCCCcHHHHHHHHHHH--hCCC---eEEEecCCCCChhhcCC----ce
Confidence 689999999888886543 3899999999999999999852 2222 12233333333332211 11
Q ss_pred cCCCCCCCCHHHHHHHHHHHhc-C--ceEEEEEeCCCCCCccchhhhhcccC-----------CCCCCcEEEEecCchH-
Q 038861 81 SNVTVNDNDLNSLQEKLEKELI-K--KKFLLVLDDMWNENYNDWELLNRPFK-----------AGTSGSKIIVTTRNRV- 145 (1165)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~-~--~~~LlvlDdv~~~~~~~~~~l~~~~~-----------~~~~~~~iiiTtR~~~- 145 (1165)
....... .. ..+ + ...++++|+++.........+...+. ..+....|+.|+...+
T Consensus 93 ~~~~~~~-~~---------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~ 162 (331)
T 2r44_A 93 IYNQHKG-NF---------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQ 162 (331)
T ss_dssp EEETTTT-EE---------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCC
T ss_pred eecCCCC-ce---------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcc
Confidence 0000000 00 000 0 12589999996654433333322211 1133455666665322
Q ss_pred -----HHH-hhcccc-eeeCCCCCHHHHHHHHhhcc
Q 038861 146 -----VAE-RVGSVR-EYPLGELSKEDCLRVLTQHS 174 (1165)
Q Consensus 146 -----~~~-~~~~~~-~~~l~~l~~~e~~~lf~~~~ 174 (1165)
+.. -..... .+.++..+.++-.+++...+
T Consensus 163 ~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~ 198 (331)
T 2r44_A 163 EGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVS 198 (331)
T ss_dssp SCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHH
T ss_pred cCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcc
Confidence 111 112222 57888889998888887765
No 236
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.87 E-value=0.00076 Score=71.79 Aligned_cols=54 Identities=13% Similarity=0.137 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchh-ccCCceEEEEE
Q 038861 5 KDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVR-RHFEIKAWTFV 63 (1165)
Q Consensus 5 ~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~w~~~ 63 (1165)
..++.+.+++..... .....+.|+|++|+|||+||.++++. .. .....++++.+
T Consensus 135 ~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~--~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 135 EAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHE--LSEKKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHH--HHHHSCCCEEEEEH
T ss_pred HHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEH
Confidence 344455566654321 12357899999999999999999863 32 22234445543
No 237
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.87 E-value=0.00056 Score=71.05 Aligned_cols=69 Identities=19% Similarity=0.394 Sum_probs=45.8
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEE--cCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhc
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFV--SEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELI 102 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 102 (1165)
.+++.|+|++|+|||+||.+++.. ....++|+.. ....+ .. ..+.++....+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~-------------~~---~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLS-------------GY---NTDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSST-------------TC---BCCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhh-------------hh---hcCHHHHHHHHHHHHh
Confidence 356789999999999999999853 2224556766 22211 00 1455666666666666
Q ss_pred CceEEEEEeCCCC
Q 038861 103 KKKFLLVLDDMWN 115 (1165)
Q Consensus 103 ~~~~LlvlDdv~~ 115 (1165)
..+ ++|+|++..
T Consensus 182 ~~~-LLVIDsI~a 193 (331)
T 2vhj_A 182 QHR-VIVIDSLKN 193 (331)
T ss_dssp HCS-EEEEECCTT
T ss_pred hCC-EEEEecccc
Confidence 656 999999943
No 238
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.79 E-value=0.0021 Score=74.54 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=21.3
Q ss_pred CcEEEEEEccCCchHHHHHHHHhC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
....+.++|++|+||||+|+.++.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999984
No 239
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.74 E-value=0.003 Score=78.11 Aligned_cols=47 Identities=21% Similarity=0.363 Sum_probs=34.9
Q ss_pred CCchHHHHHHHHHHhcCCC---CCCCCcEEEEEEccCCchHHHHHHHHhC
Q 038861 1 YGRKKDKDEIVELLLRDDS---RADDGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~---~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
||++..++.+...+..... ..+.+...+.|+|++|+|||++|+.++.
T Consensus 561 iG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 561 VGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp CSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 5888888888877764321 0112345789999999999999999985
No 240
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.64 E-value=0.0019 Score=79.09 Aligned_cols=47 Identities=21% Similarity=0.343 Sum_probs=34.2
Q ss_pred CCchHHHHHHHHHHhcCCC---CCCCCcEEEEEEccCCchHHHHHHHHhC
Q 038861 1 YGRKKDKDEIVELLLRDDS---RADDGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~---~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+|.++.++.+...+..... ........+.++|++|+|||++|+.+++
T Consensus 461 ~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 461 FGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 5788888888777753211 0112345789999999999999999985
No 241
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.55 E-value=0.0077 Score=60.81 Aligned_cols=85 Identities=19% Similarity=0.090 Sum_probs=50.2
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccC-----------CCC-CCCCHHH
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISN-----------VTV-NDNDLNS 92 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~-----------~~~-~~~~~~~ 92 (1165)
..++.|.|++|+||||+|..++. ..-..++|+......+...+.. +....+. ... ......+
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 45899999999999999999985 2234677777665455554443 2222211 111 1111123
Q ss_pred HHHHHHHHhcCceEEEEEeCCCC
Q 038861 93 LQEKLEKELIKKKFLLVLDDMWN 115 (1165)
Q Consensus 93 ~~~~l~~~l~~~~~LlvlDdv~~ 115 (1165)
....++..++.+.-++|+|.+..
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcHH
Confidence 34444444444577999998843
No 242
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.50 E-value=0.0019 Score=61.97 Aligned_cols=117 Identities=17% Similarity=0.101 Sum_probs=63.3
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCC---CCHHHHHHHHHHhc---cCC-CCCCCC-------HH
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSED---FDVFRVTKSILMSI---SNV-TVNDND-------LN 91 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~---~~~~~~~~~i~~~l---~~~-~~~~~~-------~~ 91 (1165)
..|.|++..|.||||.|-..+ .+..++-..+.++..... .+...++..+.-.+ +.. .....+ ..
T Consensus 29 g~i~v~tG~GkGKTTaA~Gla--lRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTA--ARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHH--HHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH--HHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 457777777799999997776 455555556666655443 22233333321000 000 001111 11
Q ss_pred HHHHHHHHHhcCc-eEEEEEeCCCC---CCccchhhhhcccCCCCCCcEEEEecCch
Q 038861 92 SLQEKLEKELIKK-KFLLVLDDMWN---ENYNDWELLNRPFKAGTSGSKIIVTTRNR 144 (1165)
Q Consensus 92 ~~~~~l~~~l~~~-~~LlvlDdv~~---~~~~~~~~l~~~~~~~~~~~~iiiTtR~~ 144 (1165)
......++.+... -=|||||++-- -.....+.+...+........||||+|..
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 2223344555444 44999999821 12234455555555666778999999985
No 243
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.42 E-value=0.02 Score=62.35 Aligned_cols=157 Identities=12% Similarity=-0.025 Sum_probs=95.9
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH-HhcC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEK-ELIK 103 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~ 103 (1165)
.++..++|+.|.||++.|+.+.... ....|+....+.+....+ ..++...+.. -+-+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~---------------------~~~l~~~~~~~plf~ 75 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVA-AAQGFEEHHTFSIDPNTD---------------------WNAIFSLCQAMSLFA 75 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHH-HHHTCCEEEEEECCTTCC---------------------HHHHHHHHHHHHHCC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHH-HhCCCCeeEEEEecCCCC---------------------HHHHHHHhcCcCCcc
Confidence 3588999999999999999887532 223343322222222222 3333333221 1345
Q ss_pred ceEEEEEeCCCC-CCccchhhhhcccCCCCCCcEEEEecCc-------hHHHHhh-cccceeeCCCCCHHHHHHHHhhcc
Q 038861 104 KKFLLVLDDMWN-ENYNDWELLNRPFKAGTSGSKIIVTTRN-------RVVAERV-GSVREYPLGELSKEDCLRVLTQHS 174 (1165)
Q Consensus 104 ~~~LlvlDdv~~-~~~~~~~~l~~~~~~~~~~~~iiiTtR~-------~~~~~~~-~~~~~~~l~~l~~~e~~~lf~~~~ 174 (1165)
++-++|+|+++. .....++.+...+...++++.+|+++.. ..+.... .....++..++++++..+.+...+
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHH
Confidence 667889999966 4445566676666655567777766532 2344332 233578889999999887777665
Q ss_pred cCCCCCCCCcchHHHHHHHHHHcCCCchHHHHH
Q 038861 175 LGATDFNTHQSLKEVREKIAMKCKGLPLAAKTL 207 (1165)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 207 (1165)
...+. .-..+.+..+++.++|...++...
T Consensus 156 ~~~g~----~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 156 KQLNL----ELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHTTC----EECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHcCC----CCCHHHHHHHHHHhchHHHHHHHH
Confidence 32221 122377888999999988776653
No 244
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.38 E-value=0.0015 Score=64.87 Aligned_cols=113 Identities=12% Similarity=-0.034 Sum_probs=61.6
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCC--CCCCHHHHHHHHHHHhc
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTV--NDNDLNSLQEKLEKELI 102 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~ 102 (1165)
..++.|+|..|+||||++..++. +...+-..++.+..... .+ ...+++..++.... ......++...+++.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli~~~~~d--~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLH--RLEYADVKYLVFKPKID--TR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEEECCC--GG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEEeccC--ch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 46899999999999999988874 33333334444433322 11 11233444432211 11223344444544443
Q ss_pred Cc-eEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCchH
Q 038861 103 KK-KFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRV 145 (1165)
Q Consensus 103 ~~-~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~ 145 (1165)
+. .-+||+|.+..-.....+.+. .+.+ .|..||+|.+..+
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l~-~L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVAN-ILAE--NGFVVIISGLDKN 127 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEECCSBC
T ss_pred CCCCCEEEEecCccCcHHHHHHHH-HHHh--CCCeEEEEecccc
Confidence 33 459999999554333333332 2222 2788999998543
No 245
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.30 E-value=0.01 Score=63.70 Aligned_cols=84 Identities=17% Similarity=0.139 Sum_probs=53.8
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCC-----CCCCCHHHHHHHHH
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVT-----VNDNDLNSLQEKLE 98 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 98 (1165)
.-+++.|+|++|+||||||.+++.. ....-..++|++.....+.. .++.++... ....+.++....++
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 4579999999999999999998843 22223356788766666543 333333211 13345666666666
Q ss_pred HHhc-CceEEEEEeCCC
Q 038861 99 KELI-KKKFLLVLDDMW 114 (1165)
Q Consensus 99 ~~l~-~~~~LlvlDdv~ 114 (1165)
..++ .+.-++|+|.+.
T Consensus 133 ~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHTSCCSEEEEECTT
T ss_pred HHhhhcCCCeEEehHhh
Confidence 5554 455689999983
No 246
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.28 E-value=0.012 Score=61.31 Aligned_cols=126 Identities=13% Similarity=0.057 Sum_probs=64.6
Q ss_pred EEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH-hcCceE
Q 038861 28 ISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKE-LIKKKF 106 (1165)
Q Consensus 28 v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~ 106 (1165)
+.|+|++|+||||||+.++.. ... ..+++....-.+. . ....+.....+.+. -...+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~--~~~---~~i~i~g~~l~~~--------------~--~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE--SGL---NFISVKGPELLNM--------------Y--VGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH--TTC---EEEEEETTTTCSS--------------T--THHHHHHHHHHHHHHHHTCSE
T ss_pred EEEECCCCCcHHHHHHHHHHH--cCC---CEEEEEcHHHHhh--------------h--hhHHHHHHHHHHHHHHhcCCC
Confidence 899999999999999999852 211 2333332211000 0 00011111122222 234678
Q ss_pred EEEEeCCCCCCcc-----------chhhhhcccCCC--CCCcEEEEecCchHHHHh-h----cccceeeCCCCCHHHHHH
Q 038861 107 LLVLDDMWNENYN-----------DWELLNRPFKAG--TSGSKIIVTTRNRVVAER-V----GSVREYPLGELSKEDCLR 168 (1165)
Q Consensus 107 LlvlDdv~~~~~~-----------~~~~l~~~~~~~--~~~~~iiiTtR~~~~~~~-~----~~~~~~~l~~l~~~e~~~ 168 (1165)
++++|+++..... ....+...+..+ .....++.+|..+++... . .-...+.++..+.++-.+
T Consensus 106 i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~ 185 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLA 185 (274)
T ss_dssp EEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHH
T ss_pred eEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHH
Confidence 9999999542100 011111222221 123445556665543322 1 223567888899998888
Q ss_pred HHhhcc
Q 038861 169 VLTQHS 174 (1165)
Q Consensus 169 lf~~~~ 174 (1165)
+|....
T Consensus 186 il~~~~ 191 (274)
T 2x8a_A 186 ILKTIT 191 (274)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 887664
No 247
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.25 E-value=0.01 Score=61.30 Aligned_cols=81 Identities=11% Similarity=0.071 Sum_probs=52.3
Q ss_pred EEEEEccCCchHHHHHHHHhCCcchhcc--CCceEEEEEcCCCCHHHHHHHHHHhccCCCC-----CCCCHHHH-HHHHH
Q 038861 27 VISIIGMGGVGKTTLAQLVYKDDRVRRH--FEIKAWTFVSEDFDVFRVTKSILMSISNVTV-----NDNDLNSL-QEKLE 98 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~--f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~-~~~l~ 98 (1165)
++-|+|++|+||||||.+++.. .... -..++|++....++.. .++.++.... ...+.++. ...+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 7899999999999999888743 3232 3467788877776653 2555553321 23455555 44333
Q ss_pred HH--h-cCceEEEEEeCCC
Q 038861 99 KE--L-IKKKFLLVLDDMW 114 (1165)
Q Consensus 99 ~~--l-~~~~~LlvlDdv~ 114 (1165)
.. + .++.-++|+|-+.
T Consensus 103 ~l~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HHHTCCTTCCEEEEEECST
T ss_pred HHHHhhccCceEEEEeccc
Confidence 32 2 3567899999983
No 248
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.22 E-value=0.016 Score=64.04 Aligned_cols=22 Identities=50% Similarity=0.573 Sum_probs=19.9
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
..+.++|++|+|||++|+.+++
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999985
No 249
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.13 E-value=0.014 Score=71.16 Aligned_cols=154 Identities=16% Similarity=0.146 Sum_probs=79.6
Q ss_pred CCchHHHHHHHHHHhc----C---CCCCCCCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHH
Q 038861 1 YGRKKDKDEIVELLLR----D---DSRADDGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVT 73 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~----~---~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~ 73 (1165)
+|.++.++++.+++.. . ...+-...+.|.|+|++|+||||||+.++.. ....| +.+...
T Consensus 207 ~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~--------- 272 (806)
T 1ypw_A 207 GGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP--------- 272 (806)
T ss_dssp CSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHH---------
T ss_pred CChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEch---------
Confidence 5778888888877752 0 0001123456899999999999999999853 22222 222211
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHhcCceEEEEEeCCCCCCc------cc-----hhhhhcccCC--CCCCcEEEEe
Q 038861 74 KSILMSISNVTVNDNDLNSLQEKLEKELIKKKFLLVLDDMWNENY------ND-----WELLNRPFKA--GTSGSKIIVT 140 (1165)
Q Consensus 74 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~------~~-----~~~l~~~~~~--~~~~~~iiiT 140 (1165)
++ ... ............+.......+.++++|+++.... .+ ...+...+.. ...+..+|.|
T Consensus 273 -~l----~~~-~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~a 346 (806)
T 1ypw_A 273 -EI----MSK-LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAA 346 (806)
T ss_dssp -HH----SSS-STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEE
T ss_pred -Hh----hhh-hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecc
Confidence 11 000 0011111222233333345678999999943211 00 1112111111 1234566666
Q ss_pred cCchHHH-Hhhc----ccceeeCCCCCHHHHHHHHhhcc
Q 038861 141 TRNRVVA-ERVG----SVREYPLGELSKEDCLRVLTQHS 174 (1165)
Q Consensus 141 tR~~~~~-~~~~----~~~~~~l~~l~~~e~~~lf~~~~ 174 (1165)
|...... ..+. -...+.+...+.++-.+++...+
T Consensus 347 tn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 347 TNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp CSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred cCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 6654221 1111 12456788888888888888764
No 250
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.08 E-value=0.094 Score=59.22 Aligned_cols=146 Identities=14% Similarity=0.126 Sum_probs=76.6
Q ss_pred EEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhc----
Q 038861 27 VISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELI---- 102 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~---- 102 (1165)
-|.|+|++|+||||||+.++.. .. ...+.+....-.. .........++..++
T Consensus 66 GvLL~GppGtGKTtLaraIa~~--~~---~~~i~i~g~~~~~-------------------~~~g~~~~~v~~lfq~a~~ 121 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE--AR---VPFITASGSDFVE-------------------MFVGVGAARVRDLFETAKR 121 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH--TT---CCEEEEEGGGGTS-------------------SCTTHHHHHHHHHTTTSSS
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hC---CCEEEEehhHHHH-------------------hhhhhHHHHHHHHHHHHHh
Confidence 3899999999999999999853 22 1223333221100 001111222333332
Q ss_pred CceEEEEEeCCCCCCc----------cc----hhhhhcccCCC--CCCcEEEEecCchHHHHh-h----cccceeeCCCC
Q 038861 103 KKKFLLVLDDMWNENY----------ND----WELLNRPFKAG--TSGSKIIVTTRNRVVAER-V----GSVREYPLGEL 161 (1165)
Q Consensus 103 ~~~~LlvlDdv~~~~~----------~~----~~~l~~~~~~~--~~~~~iiiTtR~~~~~~~-~----~~~~~~~l~~l 161 (1165)
..+.++++|+++.... .. ...+...+... ..+..|+.||..++.... + .-...+.+...
T Consensus 122 ~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~P 201 (499)
T 2dhr_A 122 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 201 (499)
T ss_dssp SSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCC
T ss_pred cCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCC
Confidence 2357999999943210 11 12222222222 234456666666554321 1 12247888989
Q ss_pred CHHHHHHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCc
Q 038861 162 SKEDCLRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLP 201 (1165)
Q Consensus 162 ~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 201 (1165)
+.++-.+++..++.... ..+. .....|+..+.|..
T Consensus 202 d~~~R~~IL~~~~~~~~-l~~d----v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 202 DVKGREQILRIHARGKP-LAED----VDLALLAKRTPGFV 236 (499)
T ss_dssp CHHHHHHHHHHTTSSSC-CCCS----STTHHHHTTSCSCC
T ss_pred CHHHHHHHHHHHHhcCC-CChH----HHHHHHHHhcCCCC
Confidence 99988888887653221 1111 12455777787765
No 251
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.96 E-value=0.015 Score=61.05 Aligned_cols=149 Identities=14% Similarity=0.138 Sum_probs=73.0
Q ss_pred EEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCceEE
Q 038861 28 ISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKKKFL 107 (1165)
Q Consensus 28 v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 107 (1165)
+.|+|++|+||||||+.++.. .. ...+.+... . +..... ..........++..-...+.+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~--~~---~~~i~~~~~------~----~~~~~~-----~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE--AR---VPFITASGS------D----FVEMFV-----GVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH--TT---CCEEEEEHH------H----HHHSTT-----THHHHHHHHHHHHHHTSCSEE
T ss_pred EEEECCCcChHHHHHHHHHHH--cC---CCEEEecHH------H----HHHHHh-----hHHHHHHHHHHHHHHhcCCcE
Confidence 899999999999999999853 22 222333211 1 111100 000111122222222345689
Q ss_pred EEEeCCCCC----------Cccc----hhhhhcccCCCC--CCcEEEEecCchHHHH-h----hcccceeeCCCCCHHHH
Q 038861 108 LVLDDMWNE----------NYND----WELLNRPFKAGT--SGSKIIVTTRNRVVAE-R----VGSVREYPLGELSKEDC 166 (1165)
Q Consensus 108 lvlDdv~~~----------~~~~----~~~l~~~~~~~~--~~~~iiiTtR~~~~~~-~----~~~~~~~~l~~l~~~e~ 166 (1165)
+++|+++.. .... ...+...+.... ....++.||..++... . ..-...++++..+.++-
T Consensus 136 ~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r 215 (278)
T 1iy2_A 136 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 215 (278)
T ss_dssp EEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHH
T ss_pred EehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHH
Confidence 999999321 0011 112222222221 1234444555443221 1 12335788888999888
Q ss_pred HHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCc
Q 038861 167 LRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLP 201 (1165)
Q Consensus 167 ~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 201 (1165)
.+++...+.... ..+. .....++..+.|..
T Consensus 216 ~~il~~~~~~~~-~~~~----~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 216 EQILRIHARGKP-LAED----VDLALLAKRTPGFV 245 (278)
T ss_dssp HHHHHHHHTTSC-BCTT----CCHHHHHHTCTTCC
T ss_pred HHHHHHHHccCC-CCcc----cCHHHHHHHcCCCC
Confidence 888876642211 1111 12345777777765
No 252
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.95 E-value=0.0097 Score=61.61 Aligned_cols=149 Identities=13% Similarity=0.137 Sum_probs=72.2
Q ss_pred EEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCceEE
Q 038861 28 ISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKKKFL 107 (1165)
Q Consensus 28 v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 107 (1165)
+.|+|++|+||||||+.++.. .. ...+.+.. .. +..... ..........++..-...+.+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~--~~---~~~i~~~~------~~----~~~~~~-----~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE--AR---VPFITASG------SD----FVEMFV-----GVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH--TT---CCEEEEEH------HH----HHHSCT-----THHHHHHHHHHHHHTTSSSEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hC---CCEEEeeH------HH----HHHHHh-----hHHHHHHHHHHHHHHhcCCeE
Confidence 899999999999999999853 22 12233321 11 111100 000111122222222345689
Q ss_pred EEEeCCCCC----------Cccc----hhhhhcccCCCC--CCcEEEEecCchHHHHh-h----cccceeeCCCCCHHHH
Q 038861 108 LVLDDMWNE----------NYND----WELLNRPFKAGT--SGSKIIVTTRNRVVAER-V----GSVREYPLGELSKEDC 166 (1165)
Q Consensus 108 lvlDdv~~~----------~~~~----~~~l~~~~~~~~--~~~~iiiTtR~~~~~~~-~----~~~~~~~l~~l~~~e~ 166 (1165)
+++|+++.. .... ...+...+.... ....++.||..++.... . .-...+.++..+.++-
T Consensus 112 ~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r 191 (254)
T 1ixz_A 112 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 191 (254)
T ss_dssp EEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHH
T ss_pred EEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHH
Confidence 999999321 0011 112222222221 22344445555543321 1 1234678888898888
Q ss_pred HHHHhhcccCCCCCCCCcchHHHHHHHHHHcCCCc
Q 038861 167 LRVLTQHSLGATDFNTHQSLKEVREKIAMKCKGLP 201 (1165)
Q Consensus 167 ~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 201 (1165)
.+++...+.+.. .... .....+++.+.|.-
T Consensus 192 ~~il~~~~~~~~-~~~~----~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 192 EQILRIHARGKP-LAED----VDLALLAKRTPGFV 221 (254)
T ss_dssp HHHHHHHHTTSC-BCTT----CCHHHHHHTCTTCC
T ss_pred HHHHHHHHcCCC-CCcc----cCHHHHHHHcCCCC
Confidence 888876542211 1111 11345777777754
No 253
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.91 E-value=0.0082 Score=59.39 Aligned_cols=43 Identities=28% Similarity=0.323 Sum_probs=35.1
Q ss_pred CchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhC
Q 038861 2 GRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 2 GR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.|++.++++.+.+.+.. .....+|+|.|+.|+||||+++.+..
T Consensus 2 ~~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CHHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 57788899998887542 23467999999999999999998874
No 254
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.70 E-value=0.027 Score=60.47 Aligned_cols=88 Identities=14% Similarity=0.172 Sum_probs=51.3
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhc----cCCceEEEEEcCCCCHHHHHHHHHHhccCCC---------CCCCCHH
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRR----HFEIKAWTFVSEDFDVFRVTKSILMSISNVT---------VNDNDLN 91 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~---------~~~~~~~ 91 (1165)
..++.|+|++|+||||+|.+++....... .-..++|++....++..++.. ++..++... ....+.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHH
Confidence 45899999999999999998874211111 124678888777766666553 344443211 0112222
Q ss_pred ---HHHHHHHHHhc--CceEEEEEeCC
Q 038861 92 ---SLQEKLEKELI--KKKFLLVLDDM 113 (1165)
Q Consensus 92 ---~~~~~l~~~l~--~~~~LlvlDdv 113 (1165)
++...+.+.++ .+.-+||+|.+
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 22333444443 45667888877
No 255
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.67 E-value=0.042 Score=59.34 Aligned_cols=51 Identities=14% Similarity=0.114 Sum_probs=36.1
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhc----cCCceEEEEEcCCCCHHHHHH
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRR----HFEIKAWTFVSEDFDVFRVTK 74 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~w~~~~~~~~~~~~~~ 74 (1165)
...++.|+|++|+||||+|.+++....... .-..++|++....++..++..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~ 175 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD 175 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH
Confidence 457999999999999999998874211111 234677888877767665543
No 256
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.64 E-value=0.026 Score=60.88 Aligned_cols=84 Identities=19% Similarity=0.087 Sum_probs=53.1
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCC-----CCCCCHHHHHHHHH
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVT-----VNDNDLNSLQEKLE 98 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 98 (1165)
.-+++.|+|++|+||||||.+++.. ....-..++|++.....+.. .++.++... ....+.++....++
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 3468999999999999999998742 32333467788877665543 233343211 12234556555555
Q ss_pred HHhc-CceEEEEEeCCC
Q 038861 99 KELI-KKKFLLVLDDMW 114 (1165)
Q Consensus 99 ~~l~-~~~~LlvlDdv~ 114 (1165)
...+ .+.-+||+|.+.
T Consensus 133 ~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHTTTCCSEEEEECGG
T ss_pred HHHhcCCCCEEEEcChH
Confidence 4443 346699999983
No 257
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.55 E-value=0.029 Score=60.53 Aligned_cols=83 Identities=17% Similarity=0.089 Sum_probs=51.8
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCC-----CCCCCHHHHHHHHH
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVT-----VNDNDLNSLQEKLE 98 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 98 (1165)
..+++.|+|.+|+||||||.+++.. ....-..++|++.....+... +..++... ....+.++....++
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 3468999999999999999988743 333334678888876666432 33333211 12234455555554
Q ss_pred HHh-cCceEEEEEeCC
Q 038861 99 KEL-IKKKFLLVLDDM 113 (1165)
Q Consensus 99 ~~l-~~~~~LlvlDdv 113 (1165)
... ..+.-+||+|.+
T Consensus 135 ~l~~~~~~~lVVIDsl 150 (356)
T 1u94_A 135 ALARSGAVDVIVVDSV 150 (356)
T ss_dssp HHHHHTCCSEEEEECG
T ss_pred HHHhccCCCEEEEcCH
Confidence 433 244568999988
No 258
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.55 E-value=0.034 Score=60.18 Aligned_cols=83 Identities=18% Similarity=0.102 Sum_probs=53.9
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCC-----CCCCCHHHHHHHHHH
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVT-----VNDNDLNSLQEKLEK 99 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~~ 99 (1165)
.+++.|+|.+|+||||||.+++.. ....-..++|++.....+.. .++.++... ....+.++....+++
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 458999999999999999988743 32233467898887766543 133333211 123455666666665
Q ss_pred Hhc-CceEEEEEeCCC
Q 038861 100 ELI-KKKFLLVLDDMW 114 (1165)
Q Consensus 100 ~l~-~~~~LlvlDdv~ 114 (1165)
..+ ...-+||+|.+.
T Consensus 147 l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHTTTCCSEEEEECTT
T ss_pred HHhcCCCCEEEEeChH
Confidence 554 345689999984
No 259
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.47 E-value=0.023 Score=57.89 Aligned_cols=115 Identities=15% Similarity=0.012 Sum_probs=58.4
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCC-------------------
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTV------------------- 85 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~------------------- 85 (1165)
..+++|.|++|+|||||++.++.. ....-..++|+.... ...++...+. .++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~--~~~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAK--GLRDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHH--HHHHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH--HHHCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 358999999999999999998842 222223455655332 3444433332 2221100
Q ss_pred ----CCCCHHHHHHHHHHHhc---CceEEEEEeCCCCC---CccchhhhhcccCC--CCCCcEEEEecCch
Q 038861 86 ----NDNDLNSLQEKLEKELI---KKKFLLVLDDMWNE---NYNDWELLNRPFKA--GTSGSKIIVTTRNR 144 (1165)
Q Consensus 86 ----~~~~~~~~~~~l~~~l~---~~~~LlvlDdv~~~---~~~~~~~l~~~~~~--~~~~~~iiiTtR~~ 144 (1165)
...+..+....+.+.+. .++.++|+|..... +......+...+.. ...|..||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 11244555555544432 23349999998421 11122222222211 12467788888765
No 260
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.46 E-value=0.022 Score=58.52 Aligned_cols=88 Identities=11% Similarity=0.064 Sum_probs=49.6
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhc----cCCceEEEEEcCCCCHHHHHHHHHHhccCCC---------CCCCCHH
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRR----HFEIKAWTFVSEDFDVFRVTKSILMSISNVT---------VNDNDLN 91 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~---------~~~~~~~ 91 (1165)
-.++.|.|++|+||||||..++....... .-..++|+.....+...++. ++++.++... ....+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 35899999999999999998874211111 13467788766654544433 2333333211 0112223
Q ss_pred HH---HHHHHHHhc-CceEEEEEeCC
Q 038861 92 SL---QEKLEKELI-KKKFLLVLDDM 113 (1165)
Q Consensus 92 ~~---~~~l~~~l~-~~~~LlvlDdv 113 (1165)
+. ...+.+.+. .+.-++|+|.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~ 128 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSA 128 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCc
Confidence 22 223444443 46778899988
No 261
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.45 E-value=0.025 Score=59.41 Aligned_cols=87 Identities=14% Similarity=0.056 Sum_probs=46.0
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcC-CCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhc
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSE-DFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELI 102 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 102 (1165)
+.++++|+|++|+||||++..++..... ..-..+..+.... .....+.+....+..+.......+...+...+. .+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~-~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~-~~- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML-EKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKE-LF- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHH-HG-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH-hcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHH-Hh-
Confidence 4579999999999999999988743221 1222344554432 222333344444333322212223334333333 23
Q ss_pred CceEEEEEeCC
Q 038861 103 KKKFLLVLDDM 113 (1165)
Q Consensus 103 ~~~~LlvlDdv 113 (1165)
.+.-++|+|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 34458889954
No 262
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.20 E-value=0.034 Score=59.76 Aligned_cols=89 Identities=17% Similarity=0.147 Sum_probs=51.8
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhc---------cC-----CceEEEEEcCCCCHHHHHHHHHHhccCCC-----
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRR---------HF-----EIKAWTFVSEDFDVFRVTKSILMSISNVT----- 84 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~---------~f-----~~~~w~~~~~~~~~~~~~~~i~~~l~~~~----- 84 (1165)
...++.|+|.+|+||||+|.+++....... .. ..++|++....++..++... +..++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcCCCHHHHhc
Confidence 457899999999999999998874211110 11 36678887777667666543 33333211
Q ss_pred ----CCCCCHHH---HHHHHHHHhc--CceEEEEEeCC
Q 038861 85 ----VNDNDLNS---LQEKLEKELI--KKKFLLVLDDM 113 (1165)
Q Consensus 85 ----~~~~~~~~---~~~~l~~~l~--~~~~LlvlDdv 113 (1165)
....+.++ ....+.+.++ .+.-+||+|.+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 11122232 3334444443 34568888877
No 263
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.09 E-value=0.035 Score=66.19 Aligned_cols=131 Identities=12% Similarity=0.062 Sum_probs=63.9
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIK 103 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 103 (1165)
..+-|.++|++|.|||.+|++++.. .... ++.++ .. +++... -..+...+...+...-+.
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e--~~~~-----f~~v~----~~----~l~s~~-----vGese~~vr~lF~~Ar~~ 569 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIK----GP----ELLTMW-----FGESEANVREIFDKARQA 569 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHT--TTCE-----EEECC----HH----HHHTTT-----CSSCHHHHHHHHHHHHTT
T ss_pred CCceEEEecCCCCCchHHHHHHHHH--hCCc-----eEEec----cc----hhhccc-----cchHHHHHHHHHHHHHHc
Confidence 3455789999999999999999964 2222 23322 11 222211 122333344444444456
Q ss_pred ceEEEEEeCCCCCCc---------c-----chhhhhcccCCC--CCCcEEEEecCchH-----HHHhhcccceeeCCCCC
Q 038861 104 KKFLLVLDDMWNENY---------N-----DWELLNRPFKAG--TSGSKIIVTTRNRV-----VAERVGSVREYPLGELS 162 (1165)
Q Consensus 104 ~~~LlvlDdv~~~~~---------~-----~~~~l~~~~~~~--~~~~~iiiTtR~~~-----~~~~~~~~~~~~l~~l~ 162 (1165)
.+++|++|+++..-. . ....+...+... ..+.-||-||-.++ +.+.-+-...+.++..+
T Consensus 570 ~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd 649 (806)
T 3cf2_A 570 APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649 (806)
T ss_dssp CSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC----
T ss_pred CCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcC
Confidence 789999999954210 0 012222222222 22333333444332 11111223577788778
Q ss_pred HHHHHHHHhhcc
Q 038861 163 KEDCLRVLTQHS 174 (1165)
Q Consensus 163 ~~e~~~lf~~~~ 174 (1165)
.++-.++|+.+.
T Consensus 650 ~~~R~~il~~~l 661 (806)
T 3cf2_A 650 EKSRVAILKANL 661 (806)
T ss_dssp -CHHHHTTTTTS
T ss_pred HHHHHHHHHHHh
Confidence 877788887765
No 264
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.08 E-value=0.029 Score=50.41 Aligned_cols=55 Identities=15% Similarity=0.013 Sum_probs=31.1
Q ss_pred EEEEeCCCCC-ccccCCCCCCCCcCeEEeecCCCCCcCCcccCCCCCCceeeeccCCC
Q 038861 1013 ELKVYGCPNL-ESFPEGGLPSTKLTKLTIGYCENLKALPNCMHNLTSLLHLEIGWCRS 1069 (1165)
Q Consensus 1013 ~L~L~~n~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 1069 (1165)
.++.+++.+. ..+|..+. ++|+.|+|++|.+....+..|..+++|+.|+|++|++
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4455555432 14444333 2566666666666655555666666666666666665
No 265
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.99 E-value=0.014 Score=66.06 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=34.1
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCC
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
||+++.++.+...+.... -|.|+|++|+|||++|+.++..
T Consensus 25 vGq~~~i~~l~~al~~~~--------~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 25 YERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp SSCHHHHHHHHHHHHHTC--------EEEEECCSSSSHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHhcCC--------eeEeecCchHHHHHHHHHHHHH
Confidence 689999988888876543 4899999999999999999863
No 266
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.95 E-value=0.023 Score=60.38 Aligned_cols=22 Identities=27% Similarity=0.166 Sum_probs=19.9
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
..++|+|++|+|||||++.+.+
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHH
Confidence 4789999999999999998875
No 267
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.90 E-value=0.1 Score=54.80 Aligned_cols=89 Identities=17% Similarity=0.170 Sum_probs=48.0
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHH--HHHHHHHHhccCCCC---CCCCHHHH-HHH
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVF--RVTKSILMSISNVTV---NDNDLNSL-QEK 96 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~--~~~~~i~~~l~~~~~---~~~~~~~~-~~~ 96 (1165)
...++++|+|++|+||||++..++.. ....-..+.++... .+... +-+...++..+.... ...+.... .+.
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 45789999999999999999988843 22222234455443 23222 112233333332111 11222222 234
Q ss_pred HHHHhcCceEEEEEeCCC
Q 038861 97 LEKELIKKKFLLVLDDMW 114 (1165)
Q Consensus 97 l~~~l~~~~~LlvlDdv~ 114 (1165)
+.+.+..+.-++|+|-.-
T Consensus 179 l~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 179 VAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHHTTCSEEEEEECC
T ss_pred HHHHHhcCCCEEEEECCC
Confidence 555455555688899774
No 268
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.89 E-value=0.19 Score=55.26 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=21.8
Q ss_pred CcEEEEEEccCCchHHHHHHHHhC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
++.+|.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 578999999999999999988874
No 269
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.83 E-value=0.027 Score=59.05 Aligned_cols=40 Identities=23% Similarity=0.371 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhC
Q 038861 7 KDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 7 ~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.++++..+..... ......+|.|.|++|+||||+|+.+..
T Consensus 16 ~~~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 16 LNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3344444443322 334568899999999999999999874
No 270
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.80 E-value=0.021 Score=56.86 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhC
Q 038861 5 KDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 5 ~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+-+++|.+.+.+. .....+|+|.|+.|.|||||++.+..
T Consensus 6 ~~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 6 ALCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3455565665432 23457999999999999999998874
No 271
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.79 E-value=0.063 Score=56.65 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhC
Q 038861 6 DKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 6 ~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+..+...+.+.. ....+.+|+|.|+.|+||||+|+.+..
T Consensus 75 ~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 75 TLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3444444444432 235678999999999999999998863
No 272
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.76 E-value=0.021 Score=59.67 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=22.3
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhC
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+..+|+|.|+.|+||||+|+.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999998874
No 273
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.55 E-value=0.016 Score=55.98 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=20.1
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999984
No 274
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.45 E-value=0.035 Score=49.92 Aligned_cols=52 Identities=23% Similarity=0.276 Sum_probs=35.9
Q ss_pred eeeccCccccc--cccccccCcccccccccCCCCccccCcc-cccCCCccEEeccCcc
Q 038861 391 VFSLWGYCNIF--NLPNEIGNLRHLRFLNLSGTNIQILPES-INSLYNLHTILLEDCR 445 (1165)
Q Consensus 391 ~l~l~~~~~l~--~lp~~~~~l~~Lr~L~L~~~~i~~lp~~-~~~L~~L~~L~L~~~~ 445 (1165)
+++.++. +++ .+|..+ -.+|++|+|++|.|+.+|.. |..+++|++|+|++|.
T Consensus 12 ~v~Cs~~-~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRR-GLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSS-CCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCC-CCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4566666 666 777655 24678888888888888653 4667777777777653
No 275
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.42 E-value=0.0041 Score=60.24 Aligned_cols=22 Identities=27% Similarity=0.104 Sum_probs=19.0
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+++.|+|+.|+||||++.+++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999976664
No 276
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.30 E-value=0.024 Score=55.54 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.5
Q ss_pred cEEEEEEccCCchHHHHHHHHhCC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
..+++|.|++|+||||+++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999853
No 277
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.22 E-value=0.024 Score=54.93 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=20.2
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+|.|.|++|+||||+|+++..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999984
No 278
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.20 E-value=0.021 Score=54.89 Aligned_cols=22 Identities=27% Similarity=0.227 Sum_probs=19.8
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+|+|.|++|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999874
No 279
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.16 E-value=0.022 Score=55.02 Aligned_cols=20 Identities=50% Similarity=0.777 Sum_probs=18.6
Q ss_pred EEEEEEccCCchHHHHHHHH
Q 038861 26 SVISIIGMGGVGKTTLAQLV 45 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~ 45 (1165)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999988
No 280
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.12 E-value=0.042 Score=56.58 Aligned_cols=39 Identities=26% Similarity=0.300 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhC
Q 038861 8 DEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 8 ~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+++...+..... ......+|.|.|++|+||||+|+.+..
T Consensus 16 ~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 16 ARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344444444333 344568899999999999999999874
No 281
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.10 E-value=0.083 Score=57.05 Aligned_cols=90 Identities=18% Similarity=0.179 Sum_probs=49.3
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhccC----CceEEEEEcCCCCHHHHHHHHHHhccCCC---------CCCCC-
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHF----EIKAWTFVSEDFDVFRVTKSILMSISNVT---------VNDND- 89 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f----~~~~w~~~~~~~~~~~~~~~i~~~l~~~~---------~~~~~- 89 (1165)
.-.++.|+|++|+|||||+..++......... ..++|++....+...++ ..+++..+... .....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 45799999999999999999887422111111 23478876555433333 23333322110 00111
Q ss_pred --HHHHHHHHHHHhc------CceEEEEEeCCC
Q 038861 90 --LNSLQEKLEKELI------KKKFLLVLDDMW 114 (1165)
Q Consensus 90 --~~~~~~~l~~~l~------~~~~LlvlDdv~ 114 (1165)
..++...++..++ .+.-+||+|.+.
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~t 241 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 241 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCch
Confidence 1233334444443 467799999883
No 282
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.08 E-value=0.024 Score=55.90 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.7
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.++|+|.|++|+||||+|+.++.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
No 283
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.07 E-value=0.04 Score=60.48 Aligned_cols=47 Identities=30% Similarity=0.411 Sum_probs=33.3
Q ss_pred CCchHHHHHHHHHHhc-------CC--CCCCCCcEEEEEEccCCchHHHHHHHHhC
Q 038861 1 YGRKKDKDEIVELLLR-------DD--SRADDGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~-------~~--~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
||.++.++.+...+.. .. .......+.|.++|++|+|||++|+.+++
T Consensus 18 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 18 IGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 5888888888877730 00 00111345689999999999999999985
No 284
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.04 E-value=0.11 Score=56.77 Aligned_cols=56 Identities=16% Similarity=0.108 Sum_probs=34.7
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcch----hccCCceEEEEEcCCCCHHHHHHHHHHhcc
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRV----RRHFEIKAWTFVSEDFDVFRVTKSILMSIS 81 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~----~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~ 81 (1165)
-.++.|.|++|+|||||+.+++-.... ...-..++|+.....++...+. .+++.++
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~g 237 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFG 237 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcC
Confidence 458999999999999999976421111 1123457788766655554433 2444443
No 285
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.01 E-value=0.16 Score=53.97 Aligned_cols=51 Identities=14% Similarity=0.118 Sum_probs=35.5
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHh
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMS 79 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~ 79 (1165)
..++.|.|.+|+||||+|.+++... ...-..++|++.. .+..++...+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~--a~~g~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNM--SDNDDVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH--HTTTCEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHH--HHcCCeEEEEECC--CCHHHHHHHHHHH
Confidence 4589999999999999999887432 2222566676644 5666666666544
No 286
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.96 E-value=0.074 Score=58.66 Aligned_cols=50 Identities=26% Similarity=0.262 Sum_probs=31.3
Q ss_pred EEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCC-CHHHHHHHHH
Q 038861 27 VISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDF-DVFRVTKSIL 77 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~-~~~~~~~~i~ 77 (1165)
.++|+|.+|+|||||+..+...... ..-+.++++-+++.. ...++..++.
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~-~~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQ-EHGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHH-HTCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhh-ccCcEEEEeeeccCchHHHHHHHHhh
Confidence 5899999999999999998853222 122344555555543 3334444443
No 287
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.95 E-value=0.033 Score=54.97 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=21.1
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
..+|+|.|++|.||||+|+.++.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999999984
No 288
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.93 E-value=0.23 Score=55.07 Aligned_cols=41 Identities=22% Similarity=0.146 Sum_probs=28.9
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcchhcc-CCceEEEEEcC
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRVRRH-FEIKAWTFVSE 65 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~w~~~~~ 65 (1165)
.++++|.++|.+|+||||+|..++.. .... -..+..+....
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~--l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKF--LREKHKKKVLVVSADV 139 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHH--HHHTSCCCEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHhcCCeEEEEecCC
Confidence 45789999999999999999888843 3332 23455555543
No 289
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.87 E-value=0.03 Score=54.06 Aligned_cols=22 Identities=18% Similarity=0.513 Sum_probs=20.2
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
++++|.|+.|+|||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999874
No 290
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.77 E-value=0.38 Score=52.94 Aligned_cols=25 Identities=32% Similarity=0.324 Sum_probs=22.2
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhC
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+.++|.++|++|+||||++..++.
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999998884
No 291
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.77 E-value=0.039 Score=54.12 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.2
Q ss_pred CcEEEEEEccCCchHHHHHHHHhC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
...+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999874
No 292
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.73 E-value=0.024 Score=54.41 Aligned_cols=22 Identities=27% Similarity=0.458 Sum_probs=19.9
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+|+|.|++|+||||+++.++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999874
No 293
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.69 E-value=0.031 Score=54.42 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=20.0
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+.|+|.|++|+||||+|+.++.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999984
No 294
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.69 E-value=0.16 Score=54.00 Aligned_cols=52 Identities=15% Similarity=0.024 Sum_probs=35.6
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhc
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSI 80 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l 80 (1165)
..++.|.|.+|+||||+|..++.. ....-..++|++. ..+..++...++...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~--~a~~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLS--ALNDDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHH--HHHTTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 358999999999999999998753 2222234556543 456777777665543
No 295
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.61 E-value=0.29 Score=51.25 Aligned_cols=88 Identities=15% Similarity=0.107 Sum_probs=47.5
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCC-HHHHHHHHHHhccCCC---CCCCCHHHHHHHHHHH
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFD-VFRVTKSILMSISNVT---VNDNDLNSLQEKLEKE 100 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~-~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~~ 100 (1165)
.+++++.|.+|+||||++..++.. ....-..+.++....... ....+.......+... ....+.........+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 679999999999999999888743 222233455555443222 2222333333333211 1123444444333344
Q ss_pred hc-CceEEEEEeCCC
Q 038861 101 LI-KKKFLLVLDDMW 114 (1165)
Q Consensus 101 l~-~~~~LlvlDdv~ 114 (1165)
++ ..--++|+|-.-
T Consensus 176 ~~~~~~D~ViIDTpg 190 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAG 190 (297)
T ss_dssp HHHTTCSEEEEECCC
T ss_pred HHhCCCCEEEEeCCC
Confidence 43 333478889763
No 296
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.60 E-value=0.35 Score=51.36 Aligned_cols=25 Identities=32% Similarity=0.415 Sum_probs=22.3
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhC
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+..+++|.|+.|+||||+++.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999998874
No 297
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.60 E-value=0.054 Score=61.44 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=19.8
Q ss_pred EEEEEccCCchHHHHHHHHhCC
Q 038861 27 VISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
.+.|.|.+|+||||++.++...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 7999999999999999888753
No 298
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.57 E-value=0.048 Score=52.44 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.8
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
..+|+|.|++|+||||+|+.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999874
No 299
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.57 E-value=0.036 Score=55.08 Aligned_cols=24 Identities=42% Similarity=0.589 Sum_probs=21.2
Q ss_pred cEEEEEEccCCchHHHHHHHHhCC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
.++|+|.|+.|+||||+++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999999753
No 300
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.54 E-value=0.035 Score=54.81 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=20.8
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
..+|+|.|+.|+||||+++.++.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999974
No 301
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.52 E-value=0.41 Score=50.71 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=22.3
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhC
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+.++|+|+|++|+||||++..++.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999998874
No 302
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.45 E-value=0.047 Score=52.44 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=19.8
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+.+.|+|++|+||||+|.++++
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988875
No 303
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.43 E-value=0.064 Score=54.71 Aligned_cols=24 Identities=25% Similarity=0.176 Sum_probs=21.2
Q ss_pred CcEEEEEEccCCchHHHHHHHHhC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
....|+|.|++|+||||+|+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999874
No 304
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.43 E-value=0.028 Score=55.62 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=20.6
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
..+|+|.|++|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999874
No 305
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.39 E-value=0.04 Score=54.07 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.1
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+|+|.|++|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999984
No 306
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.39 E-value=0.031 Score=53.66 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.4
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
|.|+|.||+|+|||||++++..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999998873
No 307
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.36 E-value=0.2 Score=52.57 Aligned_cols=87 Identities=14% Similarity=0.102 Sum_probs=45.6
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHH--HHHHHHhccCCCC---CCCCHHHHHH-HH
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRV--TKSILMSISNVTV---NDNDLNSLQE-KL 97 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~--~~~i~~~l~~~~~---~~~~~~~~~~-~l 97 (1165)
..++++|+|.+|+||||++..++.. ....-..+.++... ....... +.......+.... ...+..++.. .+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~--~~~~~~~v~l~~~d-~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l 173 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY--YKGKGRRPLLVAAD-TQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH--HHHTTCCEEEEECC-SSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEecCC-cccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHH
Confidence 4679999999999999999988843 22222234444433 2222221 2233333322111 1233444433 33
Q ss_pred HHHhcCceEEEEEeCC
Q 038861 98 EKELIKKKFLLVLDDM 113 (1165)
Q Consensus 98 ~~~l~~~~~LlvlDdv 113 (1165)
......+.-++|+|-.
T Consensus 174 ~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 174 EKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHTCCEEEEECC
T ss_pred HHHHhCCCCEEEEeCC
Confidence 3332244557888976
No 308
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.34 E-value=0.033 Score=53.84 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=20.4
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+.|.|+|++|+||||+|+.++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45789999999999999999874
No 309
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.34 E-value=0.042 Score=53.33 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.6
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
...|+|+|++|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998874
No 310
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.33 E-value=0.09 Score=55.66 Aligned_cols=44 Identities=25% Similarity=0.375 Sum_probs=31.0
Q ss_pred CchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhC
Q 038861 2 GRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 2 GR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+-++-.+.+.+.+...- ..+....|.|+|++|+||||+++.++.
T Consensus 3 ~~~~L~~~il~~l~~~i--~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRI--EDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CHHHHHHHHHHHHHHTT--TTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHh--ccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 34555666666664322 123456789999999999999998874
No 311
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.30 E-value=0.049 Score=53.90 Aligned_cols=25 Identities=40% Similarity=0.511 Sum_probs=22.1
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhC
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
....+|+|.|++|+||||+|+.++.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998874
No 312
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.29 E-value=0.056 Score=53.67 Aligned_cols=25 Identities=40% Similarity=0.449 Sum_probs=22.0
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhC
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
....+|+|.|++|.||||+|+.+..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999875
No 313
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.28 E-value=0.043 Score=56.37 Aligned_cols=22 Identities=27% Similarity=0.232 Sum_probs=20.0
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
++|+|.|++|+||||+|++++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999974
No 314
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.28 E-value=0.035 Score=54.95 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.1
Q ss_pred CcEEEEEEccCCchHHHHHHHHhC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
..++|+|.|++|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999874
No 315
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.27 E-value=0.044 Score=53.46 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=20.0
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+++|.|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999973
No 316
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.23 E-value=0.045 Score=52.25 Aligned_cols=22 Identities=36% Similarity=0.709 Sum_probs=19.5
Q ss_pred cEEEEEEccCCchHHHHHHHHh
Q 038861 25 FSVISIIGMGGVGKTTLAQLVY 46 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~ 46 (1165)
..+++|.|+.|.|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999754
No 317
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.19 E-value=0.13 Score=67.20 Aligned_cols=84 Identities=17% Similarity=0.071 Sum_probs=55.2
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCC-----CCCCCHHHHHHHHH
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVT-----VNDNDLNSLQEKLE 98 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 98 (1165)
+.+.|.|+|++|+|||+||.++.. .....-..++|+.+....+... ++.++... ......++..+.++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~--ea~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 456899999999999999999874 3444445677888777766655 33333110 12334455555555
Q ss_pred HHhc-CceEEEEEeCCC
Q 038861 99 KELI-KKKFLLVLDDMW 114 (1165)
Q Consensus 99 ~~l~-~~~~LlvlDdv~ 114 (1165)
+..+ .+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 5443 566799999983
No 318
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.18 E-value=0.041 Score=52.43 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=20.4
Q ss_pred CcEEEEEEccCCchHHHHHHHHhC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
...+|+|.|++|+||||+|+.++.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999874
No 319
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.15 E-value=0.02 Score=55.18 Aligned_cols=10 Identities=20% Similarity=0.288 Sum_probs=5.8
Q ss_pred CccEEEEcCC
Q 038861 963 ALKYLEVSYC 972 (1165)
Q Consensus 963 ~L~~L~l~~~ 972 (1165)
+|+.|++++|
T Consensus 42 ~L~~L~L~~n 51 (197)
T 1pgv_A 42 DLKEVNINNM 51 (197)
T ss_dssp SCCEEECTTC
T ss_pred CccEEECCCC
Confidence 4666666654
No 320
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.13 E-value=0.035 Score=53.98 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.9
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
++++|.|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999874
No 321
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.13 E-value=0.22 Score=55.03 Aligned_cols=51 Identities=22% Similarity=0.226 Sum_probs=36.3
Q ss_pred EEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCC-CHHHHHHHHHH
Q 038861 27 VISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDF-DVFRVTKSILM 78 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~-~~~~~~~~i~~ 78 (1165)
.++|.|.+|+|||+|+.++.+. ..+.+-+.++++-++... ...++.+++..
T Consensus 167 r~gIfgg~GvGKT~L~~~l~~~-~a~~~~~v~V~~~iGER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 167 KIGLFGGAGVGKTVLIMELINN-IAKAHGGVSVFGGVGERTREGNDLYMEMKE 218 (498)
T ss_dssp CEEEEECSSSSHHHHHHHHHHH-TTTTCSSCEEEEEESCCSHHHHHHHHHHHH
T ss_pred eEEeecCCCCCchHHHHHHHHH-HHhhCCCEEEEEEcccCcHHHHHHHHhhhc
Confidence 5899999999999999998853 122344667777777655 45566666654
No 322
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.10 E-value=0.046 Score=54.20 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.1
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+++|.|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999998874
No 323
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.09 E-value=0.05 Score=56.23 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=20.9
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 324
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.08 E-value=0.33 Score=54.02 Aligned_cols=43 Identities=23% Similarity=0.302 Sum_probs=29.1
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCC
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFD 68 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~ 68 (1165)
....+++|.|+.|+||||+++.++.. ... ..+.+++...+.+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgl--l~~-~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQ--FEQ-QGKSVMLAAGDTFR 333 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHH--HHH-TTCCEEEECCCTTC
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHH--hhh-cCCeEEEecCcccc
Confidence 35679999999999999999998742 222 23445554344443
No 325
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.07 E-value=0.054 Score=53.64 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=22.2
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhC
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+..+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999984
No 326
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.05 E-value=0.048 Score=52.26 Aligned_cols=21 Identities=48% Similarity=0.610 Sum_probs=19.0
Q ss_pred EEEEEccCCchHHHHHHHHhC
Q 038861 27 VISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.++|.|+.|+|||||++.++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998874
No 327
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.05 E-value=0.05 Score=53.45 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.5
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
..+|+|.|++|+||||+|+.++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998874
No 328
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.05 E-value=0.048 Score=52.78 Aligned_cols=24 Identities=25% Similarity=0.594 Sum_probs=21.1
Q ss_pred CcEEEEEEccCCchHHHHHHHHhC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
..++|+|.|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 356899999999999999998874
No 329
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.00 E-value=0.047 Score=53.46 Aligned_cols=22 Identities=41% Similarity=0.644 Sum_probs=20.2
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+|+|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999984
No 330
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.99 E-value=0.054 Score=54.02 Aligned_cols=24 Identities=46% Similarity=0.415 Sum_probs=21.2
Q ss_pred CcEEEEEEccCCchHHHHHHHHhC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+..+|+|.|+.|.|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998874
No 331
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.96 E-value=0.038 Score=53.10 Aligned_cols=21 Identities=48% Similarity=0.626 Sum_probs=19.3
Q ss_pred EEEEEccCCchHHHHHHHHhC
Q 038861 27 VISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.|+|.|++|+||||+|+.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999984
No 332
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.96 E-value=0.1 Score=55.16 Aligned_cols=41 Identities=20% Similarity=0.175 Sum_probs=29.4
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcC
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSE 65 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~ 65 (1165)
++.+||+|+|-|||||||.|..++. -....-..+.-+++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~--aLA~~GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA--AFSILGKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHH--HHHHCCCeEEEEecCC
Confidence 4678999999999999999876663 2333334566677664
No 333
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.94 E-value=0.079 Score=49.72 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.0
Q ss_pred CcEEEEEEccCCchHHHHHHHHhC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
..++++|.|+.|+||||++.++..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999884
No 334
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.92 E-value=0.051 Score=53.44 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.6
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
..+|+|.|++|+||||+|+.++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999874
No 335
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.90 E-value=0.06 Score=53.21 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.5
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhC
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
...++|.|.|++|+||+|.|+.++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999998884
No 336
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.87 E-value=0.058 Score=53.27 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=21.5
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhC
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
....+|+|.|++|+||||+|+.+..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3455899999999999999999874
No 337
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.83 E-value=0.053 Score=53.86 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=20.3
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+|+|.|+.|+||||+++.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999875
No 338
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.82 E-value=0.32 Score=55.82 Aligned_cols=52 Identities=12% Similarity=0.034 Sum_probs=35.4
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhcc-CCceEEEEEcCCCCHHHHHHHHHHh
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRH-FEIKAWTFVSEDFDVFRVTKSILMS 79 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~w~~~~~~~~~~~~~~~i~~~ 79 (1165)
...++.|.|.+|+||||+|.+++.+ .... -..++|++. ..+..++...++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~--~a~~~g~~vl~~s~--E~s~~~l~~r~~~~ 293 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQ--WGTAMGKKVGLAML--EESVEETAEDLIGL 293 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHH--HTTTSCCCEEEEES--SSCHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHH--HHHhcCCcEEEEec--cCCHHHHHHHHHHH
Confidence 3458999999999999999988743 2222 235667654 34566776666543
No 339
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.81 E-value=0.069 Score=51.90 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCchHHHHHHHHhC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
...+|+|.|++|+||||+|+.++.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999985
No 340
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.81 E-value=0.3 Score=53.69 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCchHHHHHHHHhC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+.++++|.|++|+||||++..++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999998874
No 341
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.80 E-value=0.059 Score=52.39 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.4
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
...|+|.|++|+||||+|+.++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999874
No 342
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.79 E-value=0.39 Score=52.84 Aligned_cols=52 Identities=21% Similarity=0.252 Sum_probs=35.1
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCC-CHHHHHHHHHH
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDF-DVFRVTKSILM 78 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~-~~~~~~~~i~~ 78 (1165)
..++|.|.+|+|||+|+.++++.. .+.+-+.++++-+++.. .+.++.+++..
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~ 206 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIE 206 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhh
Confidence 358999999999999999987531 22233556677676654 34556666654
No 343
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.74 E-value=0.66 Score=52.30 Aligned_cols=25 Identities=32% Similarity=0.415 Sum_probs=20.9
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhC
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+.++|+|+|.+|+||||++..++.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999998874
No 344
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.69 E-value=0.061 Score=53.37 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=20.0
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 345
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.65 E-value=0.042 Score=53.37 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=19.3
Q ss_pred EEEEEccCCchHHHHHHHHhC
Q 038861 27 VISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+|+|.|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 346
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.63 E-value=0.063 Score=55.20 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=21.6
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhC
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
....+|+|.|++|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998874
No 347
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.62 E-value=0.057 Score=53.49 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=19.4
Q ss_pred EEEEEccCCchHHHHHHHHhC
Q 038861 27 VISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+|+|.|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999874
No 348
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.61 E-value=0.065 Score=53.51 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.4
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+|+|.|++|+||||+|+.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999985
No 349
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.59 E-value=0.068 Score=51.52 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.1
Q ss_pred CcEEEEEEccCCchHHHHHHHHhC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+..+|+|.|+.|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999874
No 350
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.51 E-value=0.079 Score=51.88 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.8
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
..+|+|.|++|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999874
No 351
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.51 E-value=0.048 Score=53.56 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=19.8
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999998874
No 352
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.49 E-value=0.078 Score=49.48 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.7
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
-.+++|.|+.|.|||||++.++.
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999874
No 353
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.49 E-value=0.042 Score=53.34 Aligned_cols=23 Identities=39% Similarity=0.369 Sum_probs=16.5
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
..+|+|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999874
No 354
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.49 E-value=0.058 Score=53.18 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=20.2
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+|+|.|++|+||||+|+.++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999874
No 355
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.46 E-value=0.17 Score=58.68 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.9
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+++.|+|++|+||||++..+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~ 226 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVAD 226 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4789999999999999998874
No 356
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.42 E-value=0.05 Score=52.14 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.7
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
++|+|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999874
No 357
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.42 E-value=0.074 Score=55.57 Aligned_cols=24 Identities=33% Similarity=0.671 Sum_probs=21.6
Q ss_pred CCcEEEEEEccCCchHHHHHHHHh
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVY 46 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~ 46 (1165)
....+|+|.|++|+||||+|+.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999999999887
No 358
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.41 E-value=0.062 Score=53.25 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=19.3
Q ss_pred EEEEEccCCchHHHHHHHHhC
Q 038861 27 VISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.|+|.|+.|+||||+|+.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999984
No 359
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.41 E-value=0.074 Score=54.40 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.2
Q ss_pred CcEEEEEEccCCchHHHHHHHHhC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
...+|+|.|+.|+||||+++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998874
No 360
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.38 E-value=0.063 Score=55.04 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=20.4
Q ss_pred cEEEEEEccCCchHHHHHHHHh
Q 038861 25 FSVISIIGMGGVGKTTLAQLVY 46 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~ 46 (1165)
..+|+|.|++|+||||+++.++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999998
No 361
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.35 E-value=0.08 Score=51.33 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.4
Q ss_pred CcEEEEEEccCCchHHHHHHHHhC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
...+|+|+|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998874
No 362
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.27 E-value=0.077 Score=56.13 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=22.1
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhC
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
....+|+|.|+.|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3567999999999999999998874
No 363
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.24 E-value=0.067 Score=54.07 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=19.9
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+|+|.|++|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998873
No 364
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.21 E-value=0.071 Score=50.78 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=19.2
Q ss_pred EEEEEccCCchHHHHHHHHhC
Q 038861 27 VISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 365
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.08 E-value=0.074 Score=52.94 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.6
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
..+++|.|+.|+|||||++.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999998874
No 366
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.04 E-value=0.073 Score=53.06 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=21.0
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
..+|+|.|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 367
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.04 E-value=0.074 Score=53.38 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=20.4
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
...|+|.|++|+||||+|+.++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999874
No 368
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.03 E-value=0.25 Score=54.91 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.2
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhC
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
....+|.|+|++|+||||+|++++.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999885
No 369
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.98 E-value=0.18 Score=49.51 Aligned_cols=21 Identities=38% Similarity=0.602 Sum_probs=19.3
Q ss_pred EEEEEccCCchHHHHHHHHhC
Q 038861 27 VISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999884
No 370
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.98 E-value=0.079 Score=52.98 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.8
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
..+|+|.|+.|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999984
No 371
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.95 E-value=0.14 Score=51.52 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.1
Q ss_pred CcEEEEEEccCCchHHHHHHHHhC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
....|+|.|.+|+|||||+..+..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 357889999999999999998875
No 372
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.88 E-value=0.075 Score=53.65 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.5
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
...|+|.|++|+||||+|+.++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999874
No 373
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.83 E-value=0.082 Score=52.40 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.5
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
..+++|.|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999998874
No 374
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.80 E-value=0.082 Score=51.84 Aligned_cols=21 Identities=43% Similarity=0.727 Sum_probs=19.4
Q ss_pred EEEEEccCCchHHHHHHHHhC
Q 038861 27 VISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999984
No 375
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.80 E-value=0.069 Score=53.35 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.0
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+++|.|+.|+|||||++.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999998874
No 376
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.77 E-value=0.26 Score=49.94 Aligned_cols=21 Identities=43% Similarity=0.490 Sum_probs=17.4
Q ss_pred EEEEEEccCCchHHHHHHHHh
Q 038861 26 SVISIIGMGGVGKTTLAQLVY 46 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~ 46 (1165)
+.+.|.|+.|.||||++..+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 478999999999998776554
No 377
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.73 E-value=0.23 Score=48.45 Aligned_cols=49 Identities=20% Similarity=0.214 Sum_probs=29.4
Q ss_pred EEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHH
Q 038861 27 VISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSIL 77 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~ 77 (1165)
.|+|-|.-|+||||.++.++. ........+++..........+....++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCcHHHHHHHHh
Confidence 378899999999999999985 3433333444443333333333444433
No 378
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.73 E-value=0.14 Score=60.20 Aligned_cols=40 Identities=23% Similarity=0.295 Sum_probs=32.7
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCC
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
||.+..++.+...+.... .+.|+|++|+||||+|+.++..
T Consensus 44 ~G~~~~l~~l~~~i~~g~--------~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 44 IGQEHAVEVIKTAANQKR--------HVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp CSCHHHHHHHHHHHHTTC--------CEEEECCTTSSHHHHHHHHHHT
T ss_pred ECchhhHhhccccccCCC--------EEEEEeCCCCCHHHHHHHHhcc
Confidence 577788888877775543 5899999999999999999853
No 379
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.72 E-value=0.19 Score=53.25 Aligned_cols=24 Identities=38% Similarity=0.362 Sum_probs=21.4
Q ss_pred CcEEEEEEccCCchHHHHHHHHhC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
...+|+|.|+.|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998874
No 380
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.71 E-value=0.074 Score=53.49 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.5
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
...|.|.|++|+||||+|+.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999874
No 381
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.68 E-value=0.064 Score=56.88 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=20.2
Q ss_pred EEEEEEccCCchHHHHHHHHhCC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
..++|.|.+|+|||+|++++++.
T Consensus 176 QR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 176 QRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHHH
Confidence 46899999999999999998853
No 382
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.64 E-value=0.092 Score=55.22 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCchHHHHHHHHhC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+..+++|+|++|+||||+++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999998874
No 383
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.62 E-value=0.044 Score=59.07 Aligned_cols=111 Identities=14% Similarity=0.181 Sum_probs=58.4
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCce
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKKK 105 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 105 (1165)
.+++|.|+.|.||||+.+.+... +.......++ ++.+..... .... ...................+.+.|...+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i~-t~ed~~e~~--~~~~-~~~v~q~~~~~~~~~~~~~La~aL~~~P 197 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHIL-TIEDPIEFV--HESK-KCLVNQREVHRDTLGFSEALRSALREDP 197 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEEE-EEESSCCSC--CCCS-SSEEEEEEBTTTBSCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEEE-EccCcHHhh--hhcc-ccceeeeeeccccCCHHHHHHHHhhhCc
Confidence 48999999999999999988742 2222122222 222221100 0000 0000000001111234457888888899
Q ss_pred EEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCchHHH
Q 038861 106 FLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRVVA 147 (1165)
Q Consensus 106 ~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~~~ 147 (1165)
=+|++|++.+ .+.++.+... ...|..|++|+-.....
T Consensus 198 dvillDEp~d--~e~~~~~~~~---~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 198 DIILVGEMRD--LETIRLALTA---AETGHLVFGTLHTTSAA 234 (356)
T ss_dssp SEEEESCCCS--HHHHHHHHHH---HHTTCEEEEEESCSSHH
T ss_pred CEEecCCCCC--HHHHHHHHHH---HhcCCEEEEEEccChHH
Confidence 9999999953 3334333322 12356688888766544
No 384
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.56 E-value=0.19 Score=52.78 Aligned_cols=25 Identities=36% Similarity=0.395 Sum_probs=22.1
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhC
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
....+++|.|+.|+||||+++.++.
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3567999999999999999999874
No 385
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.54 E-value=0.092 Score=53.85 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.6
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
..+|+|.|+.|+||||+++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999983
No 386
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.48 E-value=0.11 Score=51.69 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=20.9
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
..+|+|.|+.|+||||+|+.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999874
No 387
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.47 E-value=0.093 Score=52.47 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=18.8
Q ss_pred EEEEEccCCchHHHHHHHHhC
Q 038861 27 VISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.|+|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999874
No 388
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.43 E-value=0.095 Score=51.84 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.7
Q ss_pred EEEEEEccCCchHHHHHHHHhCC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
..|+|.|+.|+||||+|+.+...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999853
No 389
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=91.35 E-value=0.071 Score=58.27 Aligned_cols=41 Identities=17% Similarity=0.243 Sum_probs=28.7
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhC
Q 038861 1 YGRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+|.+..++.+........ ..-+.|+|++|+|||++|+.+++
T Consensus 27 ~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 27 VGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp CSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHH
T ss_pred cChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHH
Confidence 577776655544443221 12389999999999999999985
No 390
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.32 E-value=0.099 Score=52.28 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=18.7
Q ss_pred EEEEEccCCchHHHHHHHHhC
Q 038861 27 VISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.|+|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999998873
No 391
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.29 E-value=0.12 Score=51.79 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.5
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999873
No 392
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.28 E-value=0.16 Score=49.66 Aligned_cols=25 Identities=36% Similarity=0.349 Sum_probs=21.2
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
....|+|.|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4457899999999999999988754
No 393
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.27 E-value=0.47 Score=46.79 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.8
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
...|+|.|+.|+||||+++.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999985
No 394
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.19 E-value=0.34 Score=52.53 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=21.9
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhC
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
++..+|+|+|.+|+||||++..+..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999988874
No 395
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.16 E-value=0.11 Score=54.90 Aligned_cols=22 Identities=41% Similarity=0.436 Sum_probs=20.2
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+|+|.|+.|+||||+|+.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999998884
No 396
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=91.16 E-value=0.48 Score=47.89 Aligned_cols=20 Identities=30% Similarity=0.245 Sum_probs=17.6
Q ss_pred EEEEccCCchHHHHHHHHhC
Q 038861 28 ISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 28 v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+.|+|+.|.|||.+|..+..
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~ 130 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAIN 130 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 78899999999999977763
No 397
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.14 E-value=0.13 Score=54.02 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.3
Q ss_pred cEEEEEEccCCchHHHHHHHHhCC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
.++|+|.|+.|+||||||..++..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999853
No 398
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.09 E-value=0.09 Score=52.58 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=19.7
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
..|+|.|++|+||||+|+.++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999874
No 399
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.02 E-value=0.12 Score=49.12 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.3
Q ss_pred CcEEEEEEccCCchHHHHHHHHhC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
..++++|.|+.|+|||||+..+..
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHH
Confidence 356899999999999999999884
No 400
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.96 E-value=0.72 Score=51.80 Aligned_cols=52 Identities=15% Similarity=0.090 Sum_probs=34.9
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHh
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMS 79 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~ 79 (1165)
..++.|.|.+|+||||+|.+++..... ..-..++|+.. ..+..++...++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~-~~g~~vl~~sl--E~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAAL-KEGVGVGIYSL--EMPAAQLTLRMMCS 251 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEES--SSCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEEC--CCCHHHHHHHHHHH
Confidence 458999999999999999988853211 12235666654 34566776666543
No 401
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.96 E-value=0.12 Score=49.26 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.4
Q ss_pred EEEEEEccCCchHHHHHHHHhCC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
+.|.|.|+.|+||||||.+++..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999998753
No 402
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.94 E-value=0.25 Score=53.09 Aligned_cols=25 Identities=36% Similarity=0.395 Sum_probs=22.2
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhC
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
....+++|+|+.|+||||+++.++.
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHh
Confidence 3568999999999999999999874
No 403
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=90.93 E-value=0.21 Score=55.08 Aligned_cols=47 Identities=30% Similarity=0.328 Sum_probs=31.5
Q ss_pred CCchHHHHHHHHHHhcC--------CCCCCCCcEEEEEEccCCchHHHHHHHHhC
Q 038861 1 YGRKKDKDEIVELLLRD--------DSRADDGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 1 vGR~~~~~~l~~~l~~~--------~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+|.++.++.+..++... .-......+-|.++|++|+||||+|+.++.
T Consensus 18 vGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 18 IGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 57777777776655321 000111234589999999999999999984
No 404
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.91 E-value=0.098 Score=50.57 Aligned_cols=21 Identities=38% Similarity=0.471 Sum_probs=19.3
Q ss_pred EEEEEccCCchHHHHHHHHhC
Q 038861 27 VISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+++|+|+.|+|||||++.++.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 689999999999999998875
No 405
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.85 E-value=0.24 Score=48.58 Aligned_cols=37 Identities=19% Similarity=-0.017 Sum_probs=24.8
Q ss_pred EEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcC
Q 038861 27 VISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSE 65 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~ 65 (1165)
.|.+.|.||+||||+|..++.. ....-..+.++.+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~--l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHA--QLRQGVRVMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH--HHHTTCCEEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHH--HHHCCCCEEEEEeCC
Confidence 4788999999999999877743 222222444555544
No 406
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.84 E-value=0.18 Score=50.50 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.3
Q ss_pred CcEEEEEEccCCchHHHHHHHHhC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
..++|+|.|.+|+|||||+..+..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999988874
No 407
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=90.83 E-value=0.64 Score=51.02 Aligned_cols=42 Identities=29% Similarity=0.373 Sum_probs=28.0
Q ss_pred CchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhC
Q 038861 2 GRKKDKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 2 GR~~~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
|....++++.+.+..-.. .... |.|+|.+|+|||++|+.+..
T Consensus 141 g~s~~m~~l~~~i~~~a~---~~~~-vli~Ge~GtGK~~lAr~ih~ 182 (387)
T 1ny5_A 141 FESPKMKEILEKIKKISC---AECP-VLITGESGVGKEVVARLIHK 182 (387)
T ss_dssp CCSHHHHHHHHHHHHHTT---CCSC-EEEECSTTSSHHHHHHHHHH
T ss_pred hccHHhhHHHHHHHHhcC---CCCC-eEEecCCCcCHHHHHHHHHH
Confidence 444556666555543221 1223 59999999999999998874
No 408
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.83 E-value=0.085 Score=49.96 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=20.0
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
++++|+|..|.|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998874
No 409
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.80 E-value=0.72 Score=51.50 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=32.8
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHH
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILM 78 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~ 78 (1165)
..++.|.|.+|+||||+|.+++.+ ....-..++|++. ..+..++...+..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~--~a~~g~~vl~fSl--Ems~~ql~~R~~~ 246 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKN--MSDNDDVVNLHSL--EMGKKENIKRLIV 246 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHH--HHHTTCEEEEECS--SSCTTHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHH--HHHcCCEEEEEEC--CCCHHHHHHHHHH
Confidence 458999999999999999998853 2222234556543 3445555555543
No 410
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.80 E-value=0.14 Score=53.15 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.6
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.++|+|.|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999999884
No 411
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.79 E-value=0.069 Score=53.36 Aligned_cols=21 Identities=38% Similarity=0.601 Sum_probs=19.4
Q ss_pred EEEEEccCCchHHHHHHHHhC
Q 038861 27 VISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999874
No 412
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.73 E-value=0.13 Score=52.13 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.1
Q ss_pred CcEEEEEEccCCchHHHHHHHHhC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.-.+++|.|++|+|||||++.++.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999863
No 413
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.70 E-value=0.13 Score=51.43 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=20.1
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+|+|.|++|.||||+|+.+..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999874
No 414
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.67 E-value=0.087 Score=53.33 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=16.2
Q ss_pred cEEEEEEccCCchHHHHHHHHh
Q 038861 25 FSVISIIGMGGVGKTTLAQLVY 46 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~ 46 (1165)
..+++|.|+.|+||||+++.+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999988
No 415
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.62 E-value=0.1 Score=52.94 Aligned_cols=22 Identities=32% Similarity=0.634 Sum_probs=20.0
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+|+|.|+.|+||||+++.++.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999984
No 416
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.60 E-value=0.12 Score=53.07 Aligned_cols=22 Identities=32% Similarity=0.378 Sum_probs=20.2
Q ss_pred cEEEEEEccCCchHHHHHHHHh
Q 038861 25 FSVISIIGMGGVGKTTLAQLVY 46 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~ 46 (1165)
-.+++|.|+.|+|||||++.++
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 4589999999999999999887
No 417
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.53 E-value=0.14 Score=53.84 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.2
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
++|+|.|+.|+||||+|+.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998884
No 418
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.49 E-value=0.13 Score=50.98 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=19.6
Q ss_pred EEEEEccCCchHHHHHHHHhC
Q 038861 27 VISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+|+|.|+.|+||||+|+.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999874
No 419
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.48 E-value=0.13 Score=52.00 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=20.2
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+++|.|+.|.|||||.+.++-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999874
No 420
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=90.33 E-value=0.63 Score=51.02 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=23.4
Q ss_pred CCCCcEEEEEEccCCchHHHHHHHHhC
Q 038861 21 ADDGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 21 ~~~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.....++..|.|.||.||||+.++.+.
T Consensus 157 ~~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 157 HVSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccccEEEEEcCCCCCHHHHHHHHhc
Confidence 345688999999999999999988874
No 421
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.33 E-value=0.17 Score=52.28 Aligned_cols=24 Identities=33% Similarity=0.264 Sum_probs=21.3
Q ss_pred CcEEEEEEccCCchHHHHHHHHhC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
..++|+|.|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 357899999999999999998874
No 422
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.30 E-value=0.075 Score=55.66 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=17.8
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
..+|+|.|+.|+||||+|+.+..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999874
No 423
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=90.21 E-value=0.2 Score=54.67 Aligned_cols=87 Identities=14% Similarity=0.221 Sum_probs=48.8
Q ss_pred EEEEEccCCchHHHHHHHHhCCcchh--------ccCC-ceEEEEEcCCC-CHHHHHHHHHHh--ccC-----CCCCCCC
Q 038861 27 VISIIGMGGVGKTTLAQLVYKDDRVR--------RHFE-IKAWTFVSEDF-DVFRVTKSILMS--ISN-----VTVNDND 89 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~~~~~~--------~~f~-~~~w~~~~~~~-~~~~~~~~i~~~--l~~-----~~~~~~~ 89 (1165)
.++|.|.+|+|||+|+.++++..... ++-+ .++++-+++.. .+.++.+++... +.. ...+...
T Consensus 149 r~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p~ 228 (464)
T 3gqb_B 149 KLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPT 228 (464)
T ss_dssp BCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSCT
T ss_pred EEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCCH
Confidence 47899999999999999988643331 1111 34455565443 455555554432 110 0112222
Q ss_pred HHHH-----HHHHHHHhc---CceEEEEEeCC
Q 038861 90 LNSL-----QEKLEKELI---KKKFLLVLDDM 113 (1165)
Q Consensus 90 ~~~~-----~~~l~~~l~---~~~~LlvlDdv 113 (1165)
..+. .-.+.++++ ++.+|+++||+
T Consensus 229 ~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 229 IERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 2222 122344443 78999999998
No 424
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.19 E-value=0.19 Score=51.37 Aligned_cols=38 Identities=21% Similarity=0.173 Sum_probs=26.9
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEc
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVS 64 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~ 64 (1165)
-.++.|.|++|+||||+|.+++.. ....-..++|+...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALE 60 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcc
Confidence 358999999999999999888642 22223456676643
No 425
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=90.19 E-value=0.19 Score=54.87 Aligned_cols=87 Identities=14% Similarity=0.204 Sum_probs=48.4
Q ss_pred EEEEEccCCchHHHHHHHHhCCcchhcc-CC-ceEEEEEcCCC-CHHHHHHHHHHh--ccC-----CCCCCCCHHHH---
Q 038861 27 VISIIGMGGVGKTTLAQLVYKDDRVRRH-FE-IKAWTFVSEDF-DVFRVTKSILMS--ISN-----VTVNDNDLNSL--- 93 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~-f~-~~~w~~~~~~~-~~~~~~~~i~~~--l~~-----~~~~~~~~~~~--- 93 (1165)
.++|.|.+|+|||+|+.++++.....+. -+ .++++-+++.. .+.++.+++... +.. ...+.....+.
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~ 232 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATP 232 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHH
Confidence 4789999999999999998864332111 11 44555565443 455566655432 110 01111111111
Q ss_pred --HHHHHHHhc---CceEEEEEeCC
Q 038861 94 --QEKLEKELI---KKKFLLVLDDM 113 (1165)
Q Consensus 94 --~~~l~~~l~---~~~~LlvlDdv 113 (1165)
.-.+.++++ ++.+|+++||+
T Consensus 233 ~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 233 RMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 112344443 78999999998
No 426
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.17 E-value=0.15 Score=51.49 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=20.1
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+++|.|+.|.|||||++.+.-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4899999999999999998874
No 427
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.14 E-value=0.43 Score=61.68 Aligned_cols=85 Identities=16% Similarity=0.072 Sum_probs=55.4
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCC-----CCCCCHHHHHHHHH
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVT-----VNDNDLNSLQEKLE 98 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 98 (1165)
..+++.|+|++|+||||||.+++.. ....-..++|++.....+... ++.++... ....+.++....++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~--~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 4568999999999999999998743 333345678888777665531 44443221 12345566666665
Q ss_pred HHh-cCceEEEEEeCCCC
Q 038861 99 KEL-IKKKFLLVLDDMWN 115 (1165)
Q Consensus 99 ~~l-~~~~~LlvlDdv~~ 115 (1165)
... +.+.-++|+|-+..
T Consensus 455 ~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHTCCSEEEESCSTT
T ss_pred HHHHhcCCCEEEECCHHH
Confidence 444 34566999999844
No 428
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.13 E-value=0.15 Score=50.89 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=18.9
Q ss_pred EEEEEccCCchHHHHHHHHhC
Q 038861 27 VISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.|+|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 379999999999999999874
No 429
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.08 E-value=0.15 Score=51.50 Aligned_cols=23 Identities=30% Similarity=0.254 Sum_probs=20.5
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
...|.|.|++|+||||+|+.++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999984
No 430
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.07 E-value=0.16 Score=49.93 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=18.8
Q ss_pred EEEEEccCCchHHHHHHHHhC
Q 038861 27 VISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+|.|.|++|+||+|.|+.++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999998884
No 431
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.07 E-value=0.15 Score=51.19 Aligned_cols=21 Identities=43% Similarity=0.501 Sum_probs=19.1
Q ss_pred EEEEEccCCchHHHHHHHHhC
Q 038861 27 VISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.|+|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999874
No 432
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.04 E-value=0.65 Score=52.32 Aligned_cols=50 Identities=18% Similarity=0.153 Sum_probs=33.1
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHH
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSIL 77 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~ 77 (1165)
..++.|.|.+|+||||+|.+++...... .-..++|+... .+..++...+.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E--~s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLE--MSAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESS--SCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECC--CCHHHHHHHHH
Confidence 4589999999999999999988532211 22356666543 34556655543
No 433
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.04 E-value=0.15 Score=51.11 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=20.0
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+++|.|+.|+|||||++.++-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999998874
No 434
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=90.03 E-value=0.28 Score=49.71 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.6
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
...+.++|++|+|||.+|.++++
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHh
Confidence 45799999999999999999985
No 435
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.01 E-value=0.41 Score=61.88 Aligned_cols=84 Identities=17% Similarity=0.074 Sum_probs=60.2
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCC-----CCCCHHHHHHHH
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTV-----NDNDLNSLQEKL 97 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 97 (1165)
++-++|-|+|+.|+||||||.++.. +.+..-..++|+......++.- ++.++.... .+..-++..+.+
T Consensus 1429 prg~~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1429 PMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 3457999999999999999998884 4566667788888877777653 555543322 344556666666
Q ss_pred HHHhc-CceEEEEEeCC
Q 038861 98 EKELI-KKKFLLVLDDM 113 (1165)
Q Consensus 98 ~~~l~-~~~~LlvlDdv 113 (1165)
...++ +..-++|+|-|
T Consensus 1502 ~~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHHTCCSEEEESCS
T ss_pred HHHHHcCCCCEEEEccH
Confidence 66664 45669999988
No 436
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.88 E-value=0.16 Score=51.20 Aligned_cols=25 Identities=32% Similarity=0.178 Sum_probs=22.0
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhC
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+..+|+|.|+.|+||||+++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 4567999999999999999988874
No 437
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=89.85 E-value=0.33 Score=51.59 Aligned_cols=43 Identities=19% Similarity=0.172 Sum_probs=30.2
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCC
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDF 67 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~ 67 (1165)
...++|+|+|-||+||||+|..++.. ....-..++-++.....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D~~~ 81 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDPKH 81 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESSSC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCCCCC
Confidence 45688999999999999999888742 33333356667766543
No 438
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=89.81 E-value=0.16 Score=51.23 Aligned_cols=23 Identities=22% Similarity=0.593 Sum_probs=20.7
Q ss_pred EEEEEEccCCchHHHHHHHHhCC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
.+++|.|+.|.|||||++.++--
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999753
No 439
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.71 E-value=0.3 Score=49.03 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCchHHHHHHHHhC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
....|+|.|++|+||||+++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999985
No 440
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=89.67 E-value=3.3 Score=43.50 Aligned_cols=42 Identities=14% Similarity=0.220 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHhCC
Q 038861 7 KDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 7 ~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
++++.+.|.............|+|.|.+|+|||||..++...
T Consensus 8 ~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 8 VNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp HHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred HHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 344555554332212234567899999999999999999764
No 441
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.67 E-value=0.12 Score=50.74 Aligned_cols=21 Identities=33% Similarity=0.335 Sum_probs=19.4
Q ss_pred EEEEEccCCchHHHHHHHHhC
Q 038861 27 VISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+++|.|+.|.|||||++.++-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 799999999999999998874
No 442
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.65 E-value=0.17 Score=53.63 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=20.1
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999884
No 443
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=89.59 E-value=1.3 Score=60.33 Aligned_cols=139 Identities=14% Similarity=0.073 Sum_probs=72.7
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhcCce
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTVNDNDLNSLQEKLEKELIKKK 105 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 105 (1165)
+-|.++|++|+|||++|+.+.... ..+ ..+.+..+...+...++..+...+.......... ....-.+++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~------~~P~~~gk~ 1337 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLT------LLPKSDIKN 1337 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEE------EEEBSSSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCcc------ccCCCCCce
Confidence 358999999999999997776431 122 3345667776677666655554432110000000 000003578
Q ss_pred EEEEEeCCCCCCccc------hhhhhcccCC-----CC-------CCcEEEEecCchH------HH-HhhcccceeeCCC
Q 038861 106 FLLVLDDMWNENYND------WELLNRPFKA-----GT-------SGSKIIVTTRNRV------VA-ERVGSVREYPLGE 160 (1165)
Q Consensus 106 ~LlvlDdv~~~~~~~------~~~l~~~~~~-----~~-------~~~~iiiTtR~~~------~~-~~~~~~~~~~l~~ 160 (1165)
.++.+||++-...+. .+.+...+.. .. .+..+|.++-... +. +-.+....+.+..
T Consensus 1338 ~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~ 1417 (2695)
T 4akg_A 1338 LVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGY 1417 (2695)
T ss_dssp EEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCC
T ss_pred EEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCC
Confidence 899999974433221 2222222111 01 1234455554331 11 1112335788888
Q ss_pred CCHHHHHHHHhhcc
Q 038861 161 LSKEDCLRVLTQHS 174 (1165)
Q Consensus 161 l~~~e~~~lf~~~~ 174 (1165)
.++++-.++|....
T Consensus 1418 P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1418 PSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 88888888877653
No 444
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.47 E-value=0.18 Score=51.87 Aligned_cols=22 Identities=45% Similarity=0.641 Sum_probs=20.1
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+++|.|+.|+|||||++.++-
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999874
No 445
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=89.45 E-value=1.1 Score=52.48 Aligned_cols=22 Identities=32% Similarity=0.693 Sum_probs=19.9
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+++|+|+.|.|||||++.+..
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999864
No 446
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.41 E-value=0.21 Score=50.76 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.6
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
-.+++|.|+.|.|||||++.++-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999864
No 447
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.39 E-value=0.17 Score=52.15 Aligned_cols=22 Identities=45% Similarity=0.564 Sum_probs=20.0
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+++|.|+.|+|||||++.+.-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4899999999999999999864
No 448
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=89.37 E-value=0.091 Score=50.76 Aligned_cols=109 Identities=12% Similarity=0.028 Sum_probs=52.8
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCC--CCCCHHHHHHHHHHHhc
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTV--NDNDLNSLQEKLEKELI 102 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~ 102 (1165)
.++..++|+.|.||||.+..+++. ....-..+..+..... .+.-...+...++.... ...+.. .+.+.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r--~~~~g~kV~v~k~~~d--~r~~~~~i~s~~g~~~~a~~~~~~~----~i~~~~~ 79 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRR--AKIAKQKIQVFKPEID--NRYSKEDVVSHMGEKEQAVAIKNSR----EILKYFE 79 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEEC---------CEEECTTSCEEECEEESSST----HHHHHCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEeccC--ccchHHHHHhhcCCceeeEeeCCHH----HHHHHHh
Confidence 478999999999999999877753 2222223333332111 11111112222221100 001111 2333344
Q ss_pred CceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCch
Q 038861 103 KKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNR 144 (1165)
Q Consensus 103 ~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~ 144 (1165)
++--+|++|.+..-+...++.+.. +.+ .|..||+|.++.
T Consensus 80 ~~~dvViIDEaqfl~~~~v~~l~~-l~~--~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 80 EDTEVIAIDEVQFFDDEIVEIVNK-IAE--SGRRVICAGLDM 118 (191)
T ss_dssp TTCSEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEEECSB
T ss_pred ccCCEEEEECCCCCCHHHHHHHHH-HHh--CCCEEEEEeccc
Confidence 333489999885543333443322 222 377899998864
No 449
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.34 E-value=0.18 Score=51.61 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=20.1
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+++|.|+.|+|||||++.++-
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 5899999999999999999874
No 450
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.33 E-value=0.18 Score=54.58 Aligned_cols=24 Identities=29% Similarity=0.153 Sum_probs=21.2
Q ss_pred CcEEEEEEccCCchHHHHHHHHhC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
..++++|+|++|+|||||++.++.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999999984
No 451
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.28 E-value=0.15 Score=50.26 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=19.9
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+++|.|+.|.|||||++.++-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999874
No 452
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=89.20 E-value=0.41 Score=52.05 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=18.7
Q ss_pred EEEEEccCCchHHHHHHHHhC
Q 038861 27 VISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.|.|+|.+|+||+++|+.++.
T Consensus 154 ~vli~GesGtGKe~lAr~ih~ 174 (368)
T 3dzd_A 154 PVLITGESGTGKEIVARLIHR 174 (368)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred hheEEeCCCchHHHHHHHHHH
Confidence 378999999999999998874
No 453
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.09 E-value=0.19 Score=50.87 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=20.1
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+++|.|+.|.|||||.+.++-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999874
No 454
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.06 E-value=0.2 Score=51.16 Aligned_cols=22 Identities=32% Similarity=0.617 Sum_probs=20.1
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+++|.|+.|+|||||.+.++-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999874
No 455
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=89.04 E-value=0.75 Score=50.24 Aligned_cols=43 Identities=21% Similarity=0.206 Sum_probs=30.5
Q ss_pred CCCCcEEEEEEc-cCCchHHHHHHHHhCCcchhccCCceEEEEEcC
Q 038861 21 ADDGFSVISIIG-MGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSE 65 (1165)
Q Consensus 21 ~~~~~~~v~i~G-~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~ 65 (1165)
.+.+.++|+|+| -||+||||+|..++.. ....-..++.++...
T Consensus 139 ~~~~~kvIav~s~KGGvGKTT~a~nLA~~--La~~g~rVlliD~D~ 182 (373)
T 3fkq_A 139 ENDKSSVVIFTSPCGGVGTSTVAAACAIA--HANMGKKVFYLNIEQ 182 (373)
T ss_dssp CTTSCEEEEEECSSTTSSHHHHHHHHHHH--HHHHTCCEEEEECCT
T ss_pred cCCCceEEEEECCCCCChHHHHHHHHHHH--HHhCCCCEEEEECCC
Confidence 445678999985 9999999999888742 333334566777663
No 456
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=89.03 E-value=0.24 Score=54.49 Aligned_cols=87 Identities=10% Similarity=0.087 Sum_probs=49.0
Q ss_pred EEEEEccCCchHHHHHHHHhCCcchhccC--CceEEEEEcCCC-CHHHHHHHHHHhccC-------CCCCCCCHHH----
Q 038861 27 VISIIGMGGVGKTTLAQLVYKDDRVRRHF--EIKAWTFVSEDF-DVFRVTKSILMSISN-------VTVNDNDLNS---- 92 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~w~~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~---- 92 (1165)
.++|.|.+|+|||+|+.+++++....+.- +.++++-+++.. .+.++.+++...-.. ...+.....+
T Consensus 154 r~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~~ 233 (469)
T 2c61_A 154 KLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTP 233 (469)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHHH
Confidence 47889999999999999998654332211 244555565543 455566665542110 0111111111
Q ss_pred -HHHHHHHHh---cCceEEEEEeCC
Q 038861 93 -LQEKLEKEL---IKKKFLLVLDDM 113 (1165)
Q Consensus 93 -~~~~l~~~l---~~~~~LlvlDdv 113 (1165)
..-.+.+++ +++.+|+++||+
T Consensus 234 ~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 234 RMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 111233444 368999999997
No 457
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=88.96 E-value=0.2 Score=51.43 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=20.1
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+++|.|+.|+|||||.+.++-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999874
No 458
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=88.95 E-value=0.2 Score=50.30 Aligned_cols=22 Identities=27% Similarity=0.594 Sum_probs=20.2
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+++|.|+.|.|||||.+.++-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999975
No 459
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=88.95 E-value=0.19 Score=51.63 Aligned_cols=22 Identities=41% Similarity=0.700 Sum_probs=20.2
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+++|.|+.|.|||||++.+.-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4899999999999999999974
No 460
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=88.94 E-value=0.26 Score=50.91 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=21.7
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhC
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
....++.+.|.||+||||++..++.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 3567889999999999999998874
No 461
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.86 E-value=0.24 Score=50.74 Aligned_cols=109 Identities=18% Similarity=0.227 Sum_probs=54.0
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHH--hccCCCCCCCCHHHHHHHHHHHhc
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILM--SISNVTVNDNDLNSLQEKLEKELI 102 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~l~~~l~ 102 (1165)
-.+++|+|+.|.||||+++.+... +...+.+.+++.-.......+-...+.. .++. .. ......+.+.+.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl---~~---~~l~~~la~aL~ 96 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKHKKSIVNQREVGE---DT---KSFADALRAALR 96 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTT---TB---SCHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCcceeecCCcceeeeHHHhCC---CH---HHHHHHHHHHHh
Confidence 368999999999999999988742 2222234443332110000000000000 0000 01 122445566666
Q ss_pred CceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCchHH
Q 038861 103 KKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRVV 146 (1165)
Q Consensus 103 ~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~~ 146 (1165)
.++-++++|+..| ......+.... ..|.-|++||-...+
T Consensus 97 ~~p~illlDEp~D--~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 97 EDPDVIFVGEMRD--LETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HCCSEEEESCCCS--HHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred hCCCEEEeCCCCC--HHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 6677889999852 22222222221 235667777766543
No 462
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.85 E-value=0.21 Score=51.41 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=20.3
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+++|.|+.|+|||||++.++-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999985
No 463
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=88.82 E-value=0.21 Score=51.22 Aligned_cols=22 Identities=36% Similarity=0.818 Sum_probs=20.2
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+++|.|+.|.|||||++.++-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999974
No 464
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.79 E-value=0.21 Score=50.91 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=20.3
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+++|.|+.|.|||||++.++-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999985
No 465
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.78 E-value=0.2 Score=52.24 Aligned_cols=23 Identities=22% Similarity=0.363 Sum_probs=20.4
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
-.+++|+|+.|.|||||++.+..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 35899999999999999998873
No 466
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=88.76 E-value=0.21 Score=50.80 Aligned_cols=22 Identities=45% Similarity=0.818 Sum_probs=20.1
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+++|.|+.|.|||||++.++-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999874
No 467
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.75 E-value=0.22 Score=50.43 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.2
Q ss_pred CcEEEEEEccCCchHHHHHHHHhC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
...+|+|.|+.|+||||+++.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998874
No 468
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=88.72 E-value=0.42 Score=51.25 Aligned_cols=43 Identities=26% Similarity=0.224 Sum_probs=30.1
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchh--ccCCceEEEEEcCCCC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVR--RHFEIKAWTFVSEDFD 68 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~--~~f~~~~w~~~~~~~~ 68 (1165)
..+++.+.|.||+||||+|..++. ... ..-..+.-++.....+
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~--~la~~~~g~~vllid~D~~~~ 61 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAV--QLALAQPNEQFLLISTDPAHN 61 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHH--HHHHHCTTSCEEEEECCSSCH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHH--HHHHhcCCCeEEEEECCCCCC
Confidence 457999999999999999988873 233 3334566666654433
No 469
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.71 E-value=0.24 Score=50.38 Aligned_cols=23 Identities=39% Similarity=0.416 Sum_probs=20.7
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
...|+|.|+.|+||||+++.++.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999884
No 470
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=88.65 E-value=0.26 Score=54.67 Aligned_cols=25 Identities=36% Similarity=0.514 Sum_probs=21.7
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhC
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+++++|+|+|.+|+||||+|..++.
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999988875
No 471
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.65 E-value=0.21 Score=50.67 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=20.1
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+++|.|+.|.|||||++.++-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4799999999999999999874
No 472
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=88.64 E-value=0.46 Score=49.92 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=28.5
Q ss_pred cEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDF 67 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~ 67 (1165)
.++|+|.|-||+||||+|..++.. ....-..+..++.....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~--La~~G~rVlliD~D~q~ 42 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAA--LAEMGKKVMIVGCDPKA 42 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEEECSSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHH--HHHCCCeEEEEecCCCC
Confidence 367888999999999999888743 22233356666666443
No 473
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=88.60 E-value=0.44 Score=50.78 Aligned_cols=43 Identities=21% Similarity=0.170 Sum_probs=30.0
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFD 68 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~ 68 (1165)
..+++.+.|-||+||||+|..++. .....-..++-++.....+
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~--~la~~g~~vllid~D~~~~ 57 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAI--QLAKVRRSVLLLSTDPAHN 57 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH--HHTTSSSCEEEEECCSSCH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHH--HHHhCCCcEEEEECCCCCC
Confidence 357888999999999999988773 2333334566676664443
No 474
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.59 E-value=0.29 Score=46.23 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.4
Q ss_pred EEEEEEccCCchHHHHHHHHhCC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
..|+|.|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999764
No 475
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.58 E-value=0.24 Score=53.40 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=20.1
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
++|+|.|+.|+||||||..++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 6899999999999999998874
No 476
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.54 E-value=0.23 Score=48.37 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=20.8
Q ss_pred cEEEEEEccCCchHHHHHHHHhCC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
.-.|+|.|.+|+|||||++.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999998753
No 477
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=88.53 E-value=0.22 Score=51.35 Aligned_cols=22 Identities=36% Similarity=0.649 Sum_probs=20.1
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+++|.|+.|.|||||++.++-
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999864
No 478
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=88.53 E-value=0.47 Score=49.22 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=27.9
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDF 67 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~ 67 (1165)
++|+|.|-||+||||+|..++.. ....-..+..++.....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~--la~~G~~VlliD~D~q~ 41 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSG--LHAMGKTIMVVGCDPKA 41 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH--HHTTTCCEEEEEECTTS
T ss_pred cEEEEecCCCCcHHHHHHHHHHH--HHHCCCcEEEEcCCCCC
Confidence 57888999999999999888742 33333356667766443
No 479
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.42 E-value=0.23 Score=52.50 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.6
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
-.+++|.|++|+|||||++.++.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 35899999999999999999874
No 480
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=88.39 E-value=0.23 Score=51.14 Aligned_cols=22 Identities=36% Similarity=0.521 Sum_probs=20.0
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+++|.|+.|.|||||++.++-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999864
No 481
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.37 E-value=0.23 Score=51.96 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.5
Q ss_pred cEEEEEEccCCchHHHHHHHHhC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
-.++.|.|++|+||||||.+++.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999998874
No 482
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=88.35 E-value=0.17 Score=49.23 Aligned_cols=111 Identities=10% Similarity=-0.040 Sum_probs=52.3
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCCHHHHHHHHHHhccCCCC--CCCCHHHHHHHHHHHh
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFDVFRVTKSILMSISNVTV--NDNDLNSLQEKLEKEL 101 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l 101 (1165)
...+..++|..|.||||.|...+.. ....-..++.+.... +.+.-...++..++.... ...+.. .+.+.+
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r--~~~~g~kVli~k~~~--d~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~ 98 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRR--TQFAKQHAIVFKPCI--DNRYSEEDVVSHNGLKVKAVPVSASK----DIFKHI 98 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEECC-------------------CCEEECSSGG----GGGGGC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEecc--CCcchHHHHHhhcCCeeEEeecCCHH----HHHHHH
Confidence 3478899999999999999777743 333333344333221 111111223333322111 011111 122222
Q ss_pred cCceEEEEEeCCCCCCccchhhhhcccCCCCCCcEEEEecCchH
Q 038861 102 IKKKFLLVLDDMWNENYNDWELLNRPFKAGTSGSKIIVTTRNRV 145 (1165)
Q Consensus 102 ~~~~~LlvlDdv~~~~~~~~~~l~~~~~~~~~~~~iiiTtR~~~ 145 (1165)
.++--+|++|.+.--+.+.++.+. .+.+ .|..||+|.++.+
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l~-~l~~--~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVVQ-VLAN--RGYRVIVAGLDQD 139 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHHH-HHHH--TTCEEEEEECSBC
T ss_pred hcCCCEEEEECcccCCHHHHHHHH-HHhh--CCCEEEEEecccc
Confidence 333349999998554333443332 2222 3778999999643
No 483
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=88.35 E-value=0.56 Score=51.93 Aligned_cols=83 Identities=16% Similarity=0.175 Sum_probs=47.1
Q ss_pred EEEEEccCCchHHHHH-HHHhCCcchhccCCc-eEEEEEcCCC-CHHHHHHHHHHhccC-------CCCCCCCHHHH---
Q 038861 27 VISIIGMGGVGKTTLA-QLVYKDDRVRRHFEI-KAWTFVSEDF-DVFRVTKSILMSISN-------VTVNDNDLNSL--- 93 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa-~~~~~~~~~~~~f~~-~~w~~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~~--- 93 (1165)
.++|.|.+|+|||+|| ..+++.. .-+. ++++-+++.. .+.++.+.+...-.. ...+.....+.
T Consensus 177 R~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~ 252 (515)
T 2r9v_A 177 RELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAP 252 (515)
T ss_dssp BEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHHH
T ss_pred EEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHHH
Confidence 5799999999999996 5677542 2343 3566666543 455555555442110 01111111111
Q ss_pred --HHHHHHHh--cCceEEEEEeCC
Q 038861 94 --QEKLEKEL--IKKKFLLVLDDM 113 (1165)
Q Consensus 94 --~~~l~~~l--~~~~~LlvlDdv 113 (1165)
...+.+++ +++.+|+++||+
T Consensus 253 ~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 253 YAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHcCCcEEEEeccH
Confidence 11233444 478999999998
No 484
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.27 E-value=0.23 Score=50.67 Aligned_cols=22 Identities=32% Similarity=0.730 Sum_probs=20.1
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+++|.|+.|+|||||.+.++-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999874
No 485
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=88.22 E-value=0.17 Score=59.11 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=19.6
Q ss_pred EEEEEccCCchHHHHHHHHhCC
Q 038861 27 VISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
-|.++|++|+|||+||+.++..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTT
T ss_pred ceEEECCCchHHHHHHHHHHHh
Confidence 4899999999999999998864
No 486
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.15 E-value=0.24 Score=51.36 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.1
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
.+++|.|+.|.|||||++.++-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4799999999999999999874
No 487
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=88.14 E-value=0.51 Score=52.32 Aligned_cols=87 Identities=18% Similarity=0.205 Sum_probs=47.8
Q ss_pred EEEEEccCCchHHHHH-HHHhCCcchh----ccCC-ceEEEEEcCCC-CHHHHHHHHHHhccC-------CCCCCCCHHH
Q 038861 27 VISIIGMGGVGKTTLA-QLVYKDDRVR----RHFE-IKAWTFVSEDF-DVFRVTKSILMSISN-------VTVNDNDLNS 92 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa-~~~~~~~~~~----~~f~-~~~w~~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~ 92 (1165)
.++|.|.+|+|||+|| ..+.+..... .+-+ .++++-+++.. .+.++.+.+...-.. ...+.....+
T Consensus 164 R~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r 243 (510)
T 2ck3_A 164 RELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQ 243 (510)
T ss_dssp BCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHHH
T ss_pred EEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHHHH
Confidence 5799999999999995 5666543210 1233 35566666544 455555555442110 0111111111
Q ss_pred H-----HHHHHHHh--cCceEEEEEeCC
Q 038861 93 L-----QEKLEKEL--IKKKFLLVLDDM 113 (1165)
Q Consensus 93 ~-----~~~l~~~l--~~~~~LlvlDdv 113 (1165)
. .-.+.+++ .++.+|+++||+
T Consensus 244 ~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 244 YLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 1 11233334 478999999998
No 488
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=88.08 E-value=0.24 Score=47.87 Aligned_cols=22 Identities=45% Similarity=0.595 Sum_probs=19.6
Q ss_pred EEEEEccCCchHHHHHHHHhCC
Q 038861 27 VISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
-|+|.|.+|+|||||+..+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3799999999999999999863
No 489
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=88.07 E-value=1.5 Score=48.49 Aligned_cols=83 Identities=18% Similarity=0.203 Sum_probs=47.0
Q ss_pred EEEEEccCCchHHHHH-HHHhCCcchhccCCc-eEEEEEcCCC-CHHHHHHHHHHhccCC-------CCCCCCHHHH---
Q 038861 27 VISIIGMGGVGKTTLA-QLVYKDDRVRRHFEI-KAWTFVSEDF-DVFRVTKSILMSISNV-------TVNDNDLNSL--- 93 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa-~~~~~~~~~~~~f~~-~~w~~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~~--- 93 (1165)
.++|.|.+|+|||+|| ..+.+. .+-+. ++++-+++.. .+.++.+.+...-... ..+.....+.
T Consensus 164 R~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a~ 239 (513)
T 3oaa_A 164 RELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAP 239 (513)
T ss_dssp BCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHHH
T ss_pred EEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHHH
Confidence 5799999999999996 566653 22333 4567777654 4555666654321111 0111111111
Q ss_pred --HHHHHHHh--cCceEEEEEeCC
Q 038861 94 --QEKLEKEL--IKKKFLLVLDDM 113 (1165)
Q Consensus 94 --~~~l~~~l--~~~~~LlvlDdv 113 (1165)
...+.+++ +++.+|+++||+
T Consensus 240 ~~a~tiAEyfrd~G~dVLli~Dsl 263 (513)
T 3oaa_A 240 YAGCAMGEYFRDRGEDALIIYDDL 263 (513)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEETH
T ss_pred HHHHHHHHHHHhcCCCEEEEecCh
Confidence 11122333 588999999998
No 490
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=87.98 E-value=1.4 Score=49.24 Aligned_cols=47 Identities=19% Similarity=0.167 Sum_probs=32.9
Q ss_pred EEEEEEccCCchHHHHHHHHhCCcchhccCCceEEEEEcCCCC-HHHHHHHH
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKDDRVRRHFEIKAWTFVSEDFD-VFRVTKSI 76 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w~~~~~~~~-~~~~~~~i 76 (1165)
..++|.|.+|+|||+|++++++. .+-+.++++-+++... +.++.+++
T Consensus 228 qr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 228 GTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp CEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred CeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 35899999999999999998742 2234566777776554 44555543
No 491
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=87.95 E-value=0.65 Score=54.45 Aligned_cols=22 Identities=32% Similarity=0.351 Sum_probs=19.4
Q ss_pred EEEEEEccCCchHHHHHHHHhC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYK 47 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~ 47 (1165)
+.+.|+|.+|+||||++..+..
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~ 186 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLA 186 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHH
Confidence 5899999999999999887763
No 492
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=87.95 E-value=0.11 Score=50.03 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=17.3
Q ss_pred Cccceeeeecc-ccccc----CCcccCCCCCCCEEEEeCCCC
Q 038861 985 TSLEVIAISYL-ENLKS----LPAGLHNLHHLQELKVYGCPN 1021 (1165)
Q Consensus 985 ~~L~~L~L~~n-~~~~~----~p~~~~~l~~L~~L~L~~n~~ 1021 (1165)
+.|+.|+|++| .+... +-..+..-+.|++|+|++|.+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~i 82 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAI 82 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCC
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCC
Confidence 55666666654 33211 222333344555555555554
No 493
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=87.88 E-value=0.58 Score=46.27 Aligned_cols=26 Identities=35% Similarity=0.487 Sum_probs=22.5
Q ss_pred CCcEEEEEEccCCchHHHHHHHHhCC
Q 038861 23 DGFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 23 ~~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
.....|+|.|+.|+||||+++.+...
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999853
No 494
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=87.87 E-value=0.3 Score=45.74 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.1
Q ss_pred EEEEEEccCCchHHHHHHHHhCC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
+.|+|.|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999998754
No 495
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=87.80 E-value=0.39 Score=59.54 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=19.5
Q ss_pred cEEEEEEccCCchHHHHHHHH
Q 038861 25 FSVISIIGMGGVGKTTLAQLV 45 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~ 45 (1165)
.++++|+|+.|.||||+.+.+
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHH
Confidence 479999999999999999988
No 496
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=87.76 E-value=0.25 Score=48.44 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.2
Q ss_pred EEEEEEccCCchHHHHHHHHhCC
Q 038861 26 SVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 26 ~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
-.|+|.|.+|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999998754
No 497
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=87.74 E-value=0.6 Score=51.68 Aligned_cols=83 Identities=18% Similarity=0.169 Sum_probs=46.7
Q ss_pred EEEEEccCCchHHHHH-HHHhCCcchhccCCc-eEEEEEcCCC-CHHHHHHHHHHhccCC-------CCCCCCHHHH---
Q 038861 27 VISIIGMGGVGKTTLA-QLVYKDDRVRRHFEI-KAWTFVSEDF-DVFRVTKSILMSISNV-------TVNDNDLNSL--- 93 (1165)
Q Consensus 27 ~v~i~G~~GiGKTtLa-~~~~~~~~~~~~f~~-~~w~~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~~--- 93 (1165)
.++|.|.+|+|||+|| ..+++.. .-+. ++++-+++.. .+.++.+.+...-... ..+.....+.
T Consensus 164 R~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~ 239 (502)
T 2qe7_A 164 RELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAP 239 (502)
T ss_dssp BCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHHH
Confidence 5799999999999996 4666532 2343 3566666543 4455555555421110 1111111111
Q ss_pred --HHHHHHHh--cCceEEEEEeCC
Q 038861 94 --QEKLEKEL--IKKKFLLVLDDM 113 (1165)
Q Consensus 94 --~~~l~~~l--~~~~~LlvlDdv 113 (1165)
...+.+++ .++.+|+++||+
T Consensus 240 ~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 240 YAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHcCCcEEEEEecH
Confidence 11233444 578999999998
No 498
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=87.49 E-value=0.67 Score=46.37 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=21.2
Q ss_pred cEEEEEEccCCchHHHHHHHHhCC
Q 038861 25 FSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 25 ~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
...|+|.|+.|+||||+++.++..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999853
No 499
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=87.44 E-value=1.2 Score=53.84 Aligned_cols=33 Identities=27% Similarity=0.490 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccCCchHHHHHHHHh
Q 038861 6 DKDEIVELLLRDDSRADDGFSVISIIGMGGVGKTTLAQLVY 46 (1165)
Q Consensus 6 ~~~~l~~~l~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~ 46 (1165)
..+.+...+.+. .++.|.|+.|.||||++..+.
T Consensus 98 q~~~i~~~l~~~--------~~vii~gpTGSGKTtllp~ll 130 (773)
T 2xau_A 98 QRDEFLKLYQNN--------QIMVFVGETGSGKTTQIPQFV 130 (773)
T ss_dssp GHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHHhCC--------CeEEEECCCCCCHHHHHHHHH
Confidence 345566666443 368999999999999766554
No 500
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=87.24 E-value=0.41 Score=45.76 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=21.4
Q ss_pred CcEEEEEEccCCchHHHHHHHHhCC
Q 038861 24 GFSVISIIGMGGVGKTTLAQLVYKD 48 (1165)
Q Consensus 24 ~~~~v~i~G~~GiGKTtLa~~~~~~ 48 (1165)
+...|+|.|.+|+|||||+..+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457899999999999999998764
Done!