Query 038865
Match_columns 345
No_of_seqs 147 out of 324
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 04:04:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038865.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038865hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04139 Rad9: Rad9; InterPro 100.0 8.4E-60 1.8E-64 441.4 28.6 246 13-282 1-252 (252)
2 KOG2810 Checkpoint 9-1-1 compl 100.0 7.5E-47 1.6E-51 363.4 11.4 316 1-343 1-325 (394)
3 KOG1636 DNA polymerase delta p 100.0 3.5E-34 7.6E-39 256.0 19.5 249 7-285 6-257 (260)
4 PTZ00113 proliferating cell nu 100.0 9E-33 2E-37 261.1 28.1 261 2-287 1-271 (275)
5 PHA03383 PCNA-like protein; Pr 100.0 4.9E-32 1.1E-36 254.8 28.9 250 3-283 8-261 (262)
6 TIGR00590 pcna proliferating c 100.0 1.1E-31 2.3E-36 252.6 28.7 256 3-286 2-258 (259)
7 PLN00057 proliferating cell nu 100.0 1.2E-31 2.5E-36 252.8 28.6 257 3-287 2-259 (263)
8 PTZ00483 proliferating cell nu 100.0 9.5E-31 2.1E-35 246.1 29.1 246 10-285 8-264 (264)
9 cd00577 PCNA Proliferating Cel 99.9 8.3E-25 1.8E-29 202.1 29.7 245 6-283 2-247 (248)
10 PRK01115 DNA polymerase slidin 99.9 2E-21 4.3E-26 180.9 30.2 245 4-284 3-247 (247)
11 PF00705 PCNA_N: Proliferating 99.8 2.6E-17 5.7E-22 139.1 16.9 116 3-121 2-118 (127)
12 PF02144 Rad1: Repair protein 99.4 1.9E-10 4.2E-15 109.3 25.8 229 3-255 2-268 (275)
13 PF02747 PCNA_C: Proliferating 99.3 4.3E-11 9.4E-16 101.2 11.9 127 132-282 2-128 (128)
14 COG0592 DnaN DNA polymerase sl 99.1 2.2E-09 4.7E-14 106.0 16.8 260 3-283 61-363 (364)
15 PF04005 Hus1: Hus1-like prote 99.1 3E-07 6.5E-12 88.3 30.1 265 1-280 1-289 (292)
16 cd00140 beta_clamp Beta clamp 98.9 8.9E-07 1.9E-11 86.5 26.0 220 9-282 130-364 (365)
17 PRK05643 DNA polymerase III su 98.5 6.8E-05 1.5E-09 73.8 24.7 217 11-282 134-365 (367)
18 KOG3999 Checkpoint 9-1-1 compl 98.4 7E-05 1.5E-09 69.8 21.7 247 1-282 1-282 (284)
19 KOG2810 Checkpoint 9-1-1 compl 98.4 2.2E-07 4.8E-12 90.9 3.6 124 142-288 7-132 (394)
20 smart00480 POL3Bc DNA polymera 98.3 0.00042 9.2E-09 67.7 24.3 204 11-261 116-334 (345)
21 PRK14945 DNA polymerase III su 98.2 0.00071 1.5E-08 66.7 24.1 214 10-282 129-360 (362)
22 PRK14941 DNA polymerase III su 98.0 0.0048 1.1E-07 61.2 25.1 225 11-283 136-371 (374)
23 PRK14940 DNA polymerase III su 97.9 0.0043 9.4E-08 61.4 23.7 219 10-283 132-365 (367)
24 PRK14944 DNA polymerase III su 97.9 0.0044 9.4E-08 61.7 23.4 207 24-283 158-374 (375)
25 PRK14943 DNA polymerase III su 97.9 0.01 2.2E-07 58.7 26.0 220 10-283 131-372 (374)
26 PRK07761 DNA polymerase III su 97.8 0.0076 1.7E-07 59.7 23.5 228 10-283 129-373 (376)
27 PRK06673 DNA polymerase III su 97.8 0.0071 1.5E-07 60.1 23.1 205 25-283 162-374 (376)
28 TIGR00663 dnan DNA polymerase 97.8 0.016 3.5E-07 57.0 24.9 220 10-282 131-365 (367)
29 PRK14942 DNA polymerase III su 97.7 0.018 4E-07 57.2 23.8 205 23-282 161-371 (373)
30 cd00140 beta_clamp Beta clamp 97.6 0.028 6.2E-07 54.7 23.0 202 1-252 1-220 (365)
31 PRK14947 DNA polymerase III su 97.5 0.052 1.1E-06 54.2 23.6 208 25-284 156-373 (384)
32 PRK14946 DNA polymerase III su 97.4 0.063 1.4E-06 53.3 22.6 189 25-261 156-351 (366)
33 PF02768 DNA_pol3_beta_3: DNA 97.0 0.011 2.4E-07 48.9 10.8 113 132-282 4-120 (121)
34 PRK01115 DNA polymerase slidin 96.9 0.033 7.2E-07 51.7 15.0 93 10-107 138-230 (247)
35 KOG3194 Checkpoint 9-1-1 compl 96.9 0.083 1.8E-06 49.4 16.5 246 4-281 12-270 (279)
36 PF02747 PCNA_C: Proliferating 96.8 0.14 3.1E-06 43.0 16.3 106 10-119 15-125 (128)
37 PLN00057 proliferating cell nu 96.7 0.048 1E-06 51.6 14.1 116 144-286 8-123 (263)
38 TIGR00590 pcna proliferating c 96.7 0.048 1E-06 51.5 13.8 115 144-285 8-122 (259)
39 PF00705 PCNA_N: Proliferating 96.3 0.23 5.1E-06 41.8 14.3 95 144-260 8-102 (127)
40 PRK14943 DNA polymerase III su 95.7 2.4 5.3E-05 41.8 22.6 133 1-156 1-142 (374)
41 PRK05643 DNA polymerase III su 95.3 3.2 6.8E-05 40.7 23.8 209 1-260 1-227 (367)
42 PHA03383 PCNA-like protein; Pr 95.1 0.88 1.9E-05 43.2 14.8 118 144-288 14-132 (262)
43 PRK14945 DNA polymerase III su 95.0 3.9 8.5E-05 40.2 26.0 203 1-260 1-221 (362)
44 cd00577 PCNA Proliferating Cel 95.0 0.94 2E-05 41.4 14.5 105 11-119 138-243 (248)
45 TIGR00663 dnan DNA polymerase 94.8 4.6 9.9E-05 39.6 22.5 133 1-156 1-142 (367)
46 PRK14941 DNA polymerase III su 94.5 5.5 0.00012 39.5 25.8 209 1-260 1-230 (374)
47 smart00480 POL3Bc DNA polymera 94.4 5.5 0.00012 38.8 21.7 186 25-260 15-209 (345)
48 PRK14940 DNA polymerase III su 94.3 6.1 0.00013 39.0 25.1 133 1-155 1-142 (367)
49 PTZ00113 proliferating cell nu 93.6 2.2 4.7E-05 40.8 13.9 116 144-286 8-123 (275)
50 PTZ00483 proliferating cell nu 93.5 2 4.4E-05 40.8 13.4 93 10-108 147-240 (264)
51 PF00712 DNA_pol3_beta: DNA po 93.2 2 4.3E-05 35.4 11.5 103 1-123 1-112 (120)
52 PRK14947 DNA polymerase III su 93.1 3.4 7.4E-05 41.3 15.1 133 1-155 1-142 (384)
53 PRK06673 DNA polymerase III su 92.1 14 0.00029 36.8 22.7 136 1-154 1-147 (376)
54 PRK14946 DNA polymerase III su 91.8 6.1 0.00013 39.2 14.9 134 1-155 1-142 (366)
55 PRK07761 DNA polymerase III su 91.3 16 0.00035 36.1 23.8 131 1-156 1-140 (376)
56 PF02144 Rad1: Repair protein 90.0 2.6 5.6E-05 40.1 9.9 94 11-109 174-275 (275)
57 PRK14942 DNA polymerase III su 89.9 22 0.00048 35.3 22.9 138 1-154 1-148 (373)
58 PF04139 Rad9: Rad9; InterPro 87.7 7.8 0.00017 36.1 11.3 108 9-118 136-248 (252)
59 PRK14944 DNA polymerase III su 84.4 46 0.00099 33.1 25.9 135 1-155 1-145 (375)
60 PF02767 DNA_pol3_beta_2: DNA 83.1 13 0.00027 30.3 9.2 73 25-107 28-100 (116)
61 PF04005 Hus1: Hus1-like prote 70.6 1E+02 0.0022 29.5 14.4 113 4-120 152-289 (292)
62 PF02768 DNA_pol3_beta_3: DNA 69.1 61 0.0013 26.3 11.0 78 11-97 17-98 (121)
63 COG0592 DnaN DNA polymerase sl 66.9 1.4E+02 0.003 29.6 18.1 135 1-157 1-144 (364)
64 KOG3999 Checkpoint 9-1-1 compl 60.9 90 0.0019 29.8 9.9 116 2-120 157-280 (284)
65 KOG1636 DNA polymerase delta p 52.5 2E+02 0.0044 26.9 12.0 106 10-121 141-254 (260)
66 PF12139 APS-reductase_C: Aden 35.8 59 0.0013 25.4 3.7 25 99-123 19-43 (83)
67 PF01644 Chitin_synth_1: Chiti 26.6 96 0.0021 27.4 4.0 54 203-256 89-151 (163)
68 PF15020 CATSPERD: Cation chan 26.3 3.4E+02 0.0073 29.7 8.7 115 138-280 445-568 (733)
69 PF00712 DNA_pol3_beta: DNA po 22.4 4.2E+02 0.009 21.4 12.3 84 69-168 2-94 (120)
No 1
>PF04139 Rad9: Rad9; InterPro: IPR007268 Rad9 is required for transient cell-cycle arrests and transcriptional induction of DNA repair in response to DNA damage.; GO: 0006281 DNA repair; PDB: 3GGR_A 3G65_A 3A1J_A.
Probab=100.00 E-value=8.4e-60 Score=441.36 Aligned_cols=246 Identities=35% Similarity=0.642 Sum_probs=196.4
Q ss_pred HHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeee---cCCEEEEEEEchhhHHHhcCC---CC
Q 038865 13 FARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTV---SGAQVQCSVLLKAVCAVLRTP---TA 86 (345)
Q Consensus 13 f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~---~~~~~~~~i~~Ksll~vfk~~---~~ 86 (345)
|+|+|+||+||||||+|+++++||.|+|||+|||||++|.|+++||++|.. +.+.+.|+|++|++++|||+. .+
T Consensus 1 f~ral~~Lskigeel~ie~~~~~L~l~avNss~Sa~~~~~F~~~FF~~y~~~~~~~~~~~~~i~~K~~l~vfr~~~~~~~ 80 (252)
T PF04139_consen 1 FARALQCLSKIGEELYIEITEDGLSLRAVNSSRSAYAQFRFSKSFFDKYQADSDSQDSFSCKISMKSLLSVFRSLSTLEK 80 (252)
T ss_dssp HHHHHHHHHTT-SEEEEEEETTEEEEEEE-TTSSEEEEEEETGGGSSEEE--SSSS----EEEEHHHHHHHHSSCTCCHH
T ss_pred CHHHHHHHHhhCCeEEEEEcCCeEEEEEECccccEEEEEEEChHHhhhhcccCCCCCcEEEEEEchhhhhhhcccccccc
Confidence 799999999999999999999999999999999999999999999999922 235689999999999999963 36
Q ss_pred ccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHHHhhhcCCcceEEEEE
Q 038865 87 SIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRLLSNFQSSLQEITVIA 166 (345)
Q Consensus 87 ~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~F~~~~eeItl~~ 166 (345)
+||+|.|++ +.++++|+|+|+|++||+|||+|+|+++ +..++.+|++.++|+|+++|++|+++++||+++.|||||.+
T Consensus 81 ~Ve~c~i~i-~~~~~~L~~~l~c~~gI~Kt~~l~~~~~-~~~~a~~d~~~~~n~l~~~~~~l~~~l~~f~~~~eeitl~~ 158 (252)
T PF04139_consen 81 NVESCEISI-DNDESRLIFQLFCKNGIIKTYNLPYEEC-ESLQAVFDKESCPNYLVISPRLLKDLLDHFPSSTEEITLEV 158 (252)
T ss_dssp CEEEEEEEE--TTSSEEEEEEEEGGGEEEEEEEE-CE----------GGGSSEEEEEEHHHHHHHHTTS-TT--EEEEEE
T ss_pred ceeEEEEEE-cCCCcEEEEEEEeccceEEEEEEEEEec-cccccccchhcCCceEEEChHHHHHHHhhcCCChhhEEEEe
Confidence 899999999 6789999999999999999999999874 66789999999999999999999999999999999999999
Q ss_pred cCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHHHHHHHhhhccCCCeE
Q 038865 167 TEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELKAFLSFCEGCEVDI 246 (345)
Q Consensus 167 t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefkail~fae~~~~~i 246 (345)
++ ++|.+++|+++..+.+++|+|+|+|+++ ||++|. +.++++|||+||||||+++|||+++++|
T Consensus 159 ~~--------------~~v~~~s~~~~~~~~~~~l~t~v~i~~~-ef~~~~-~~~~~~itF~lKefka~l~~ae~~~~~i 222 (252)
T PF04139_consen 159 TD--------------DKVSFKSYTEEIQDSKQPLSTEVTISTE-EFDEYN-VQEDTDITFSLKEFKAILSFAESLSLPI 222 (252)
T ss_dssp EC--------------TCEEEEEE-----SSS---EEEEEE-GG-GSSEEE---TT-EEEEEHHHHHHHHHHHHHTTEEE
T ss_pred cC--------------CEEEEEeecccccccccceEEEEEEehH-hcceEE-cCCCCEEEEEeHHHHHHHHHHHhcCCcE
Confidence 86 3799999999998888999999999997 999998 6777999999999999999999999999
Q ss_pred EEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEec
Q 038865 247 HLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATM 282 (345)
Q Consensus 247 ~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~ 282 (345)
++||+.||+||+|+.+ + +++|+++|||||+
T Consensus 223 ~~~f~~pG~Pi~~~~~----~--~~~~~~~~vlaTl 252 (252)
T PF04139_consen 223 SIYFDNPGRPILFELE----Q--NDHFEAEFVLATL 252 (252)
T ss_dssp EEEESSTTS-EEEEEE--------SSEEEEEEE--B
T ss_pred EEEECCCCCcEEEEEC----C--CCcEEEEEEEEcC
Confidence 9999999999999843 2 2589999999997
No 2
>KOG2810 consensus Checkpoint 9-1-1 complex, RAD9 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=100.00 E-value=7.5e-47 Score=363.44 Aligned_cols=316 Identities=30% Similarity=0.396 Sum_probs=268.1
Q ss_pred CeeEEecccHHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCC--EEEEEEEchhhH
Q 038865 1 MEFAVSGNALKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGA--QVQCSVLLKAVC 78 (345)
Q Consensus 1 M~~~l~~~~~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~--~~~~~i~~Ksll 78 (345)
|++.+++.++|+++|+|.+|+|||+||+|++++.||.|+++|++||||++++|++.||+.|+++.. .+.|+|.||.++
T Consensus 1 m~~~vs~~nlr~lArai~sLSri~~ev~iev~~~~l~l~t~N~srSa~~~~~f~~~FF~~ydf~~~q~~~~~~v~mK~cl 80 (394)
T KOG2810|consen 1 MEQTVSGSNLRVLARAIVSLSRIGEEVTIEVSPLGLCLKTVNESRSAFSCATFKEMFFGVYDFQPPQADFGCKVSMKFCL 80 (394)
T ss_pred CceeeccchhHHHHHHhhhHhhhcceeEEEEcCCeeEEEecccccchhhhhhhhHhhccchhcCCccccchhhhhHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999653 244889999999
Q ss_pred HHhcCC---CCccceEEEEecCCCCC-eEEEEEEeCCCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHHHhh
Q 038865 79 AVLRTP---TASIDNLTVQLPNSDAP-KVQWTLKCYNGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRLLSN 154 (345)
Q Consensus 79 ~vfk~~---~~~vd~~~i~l~d~d~~-~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~ 154 (345)
+|||.. ..++..|...+ ++... +|+|+|.|+.|+.|||+++|.++..+++ .+|+..|+|.+++.+++|+++..|
T Consensus 81 svFRgl~~~~~~~~~~~~~~-~d~~s~rl~~~l~ckl~~~kt~~atl~d~qS~~~-~~d~~~~~n~~~~~~~~L~~~~~n 158 (394)
T KOG2810|consen 81 SVFRGLLFFAESTHLCESIL-FDAPSRRLIFTLKCKLGVGKTILATLSDTQSIQH-VLDSSECPNILVQLAKILTPIPDN 158 (394)
T ss_pred HHHhhhcccccccceeeeec-CCCCCcceEEEehhhhcccceEEEEeecchhhhh-ccCcccCCcceecchhhccccccc
Confidence 999954 46778888887 45667 9999999999999999999998766665 599999999999999999999999
Q ss_pred hcCCcceEEEEEcCCCCCCCCcccccCCeEEEEEec---cCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHH
Q 038865 155 FQSSLQEITVIATEPTSLPSDAASEIGGKAVELRSY---IDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKE 231 (345)
Q Consensus 155 F~~~~eeItl~~t~~~~~~s~~~~~~g~~~v~lks~---~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKe 231 (345)
|.+..+|+|+.++.+ .+.++++ +....-..++..|.++++.. ||.++. +.+|.++++++|+
T Consensus 159 F~~~~~E~Tm~a~~~--------------r~~~~~~~~~i~~~~i~~~p~~t~~k~~~s-e~e~~~-~~~p~ev~gsl~~ 222 (394)
T KOG2810|consen 159 FAGSDIELTMKATDG--------------RRLIENFLTSIVGPEISLSPGPTPVKIDGS-ELEEED-VAEPSEVPGSLKE 222 (394)
T ss_pred ccccchhheeeccCC--------------ceecccchhhhcchhhcCCcCCcCcCCCcc-hhheee-ecccceeecchhH
Confidence 999999999999874 4556664 22222256788899999987 999987 6889999999999
Q ss_pred HHHHHhhhccCCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEecccccccCCCCCccccccccCCCCCCCCCc
Q 038865 232 LKAFLSFCEGCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATMLVSQLQLANSSEHQQAAASIPGQNGNRTE 311 (345)
Q Consensus 232 fkail~fae~~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (345)
||+++.|+++++.++..||+.||+|+++. .++++.|++.++|||+..+ .++-...++-+....++.++...+
T Consensus 223 ~~~~~lfae~l~s~~~~~~~~p~k~~ll~------~g~~~~~d~~l~lat~~~s--~e~~~~~~~~~~~~~~~~~~~~~~ 294 (394)
T KOG2810|consen 223 FKFIVLFAEALGSSVCAYFGLPGKPLLLA------SGSEGEFDAVLILATMNGS--AEGFCIKETMAQHEEEEDAAAAHS 294 (394)
T ss_pred HHHHHHHHHHhccchhcccCCCCchhhhh------cccccchhhhhhhhhhCCC--cccccccccccCccccccchhhhh
Confidence 99999999999999999999999999975 2346799999999999988 333333333333334455555555
Q ss_pred hhhHHhhhccCCCCCCCCcceeeccccCcccc
Q 038865 312 SQAQKERRRMNVSEHPSDHTRVWSELSGSYTT 343 (345)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (345)
|. .+.+.++|..+|+++|++.|...+++...
T Consensus 295 ss-~~~~s~~n~~~~~~~~~~~~~~~~~~~~~ 325 (394)
T KOG2810|consen 295 SS-VRRKSKANATSHSSTQKSKWQSESLSQEE 325 (394)
T ss_pred cc-cccccccccccCCCCcccccCCCCCcccc
Confidence 44 66788899999999999999999987654
No 3
>KOG1636 consensus DNA polymerase delta processivity factor (proliferating cell nuclear antigen) [Replication, recombination and repair]
Probab=100.00 E-value=3.5e-34 Score=256.02 Aligned_cols=249 Identities=16% Similarity=0.272 Sum_probs=222.0
Q ss_pred cccHHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhcCCCC
Q 038865 7 GNALKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLRTPTA 86 (345)
Q Consensus 7 ~~~~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk~~~~ 86 (345)
-.+...|+|++.+|+.+.++.+|+|+++|++|++||+||+|++++.+..+.|++|||++ ++.+|+++|++.||+|+ +.
T Consensus 6 l~q~sLlKkIlealkdlV~~a~fdcse~GislQaMD~SHValvsl~l~s~~F~~yRCDR-nl~lG~~L~slsKiLkc-an 83 (260)
T KOG1636|consen 6 LVQASLLKKILEALKDLVNDANFDCSETGISLQAMDSSHVALVSLLLRSEGFEKYRCDR-NLSLGMNLKSLSKILKC-AN 83 (260)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccccCceEEEEecccceEEEEEEeeccccceeccCC-ccccccCHHHHHHHHcc-cc
Confidence 34567899999999999999999999999999999999999999999999999999999 59999999999999999 78
Q ss_pred ccceEEEEecCCCCCeEEEEEE-eCCCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHHHhhhcCCcceEEEE
Q 038865 87 SIDNLTVQLPNSDAPKVQWTLK-CYNGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRLLSNFQSSLQEITVI 165 (345)
Q Consensus 87 ~vd~~~i~l~d~d~~~L~~~l~-c~~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~F~~~~eeItl~ 165 (345)
|.|.++++.+| +.+.+++.|. .+.+.+-.|.+.+++ ++.+|+.+|+..|.+.++||+.+|.+++++.....|.|+|.
T Consensus 84 ned~~Tlkaed-~~dti~l~fe~~~~dki~dy~lKLmd-iD~ehl~IPe~dy~~~~~mPa~EF~ricrdls~f~Dsv~I~ 161 (260)
T KOG1636|consen 84 NEDTVTLKAED-NPDTITLMFESPKQDKIADYELKLMD-IDSEHLGIPEQDYDAVVTMPAGEFSRICRDLSTFSDSVVIS 161 (260)
T ss_pred CCCceEEEeec-CCceEEEEEECCCCCcceeeEEEeee-ccHHHcCCCcccceEEEEccHHHHHHHHHHHhhhcCeEEEE
Confidence 99999999865 5678888885 556899999999985 89999999999999999999999999999999999999999
Q ss_pred EcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHHHHHHHhhhccCCC-
Q 038865 166 ATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELKAFLSFCEGCEV- 244 (345)
Q Consensus 166 ~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefkail~fae~~~~- 244 (345)
+++++++|+. .||+|.+.+.++.+++..... +.|+|+ .++|+.+||++||+ ..|.++.++
T Consensus 162 ~tkegv~F~~-~Gdig~asi~l~~~~~~d~~e-----~av~iE----------~~~pVtltfa~kYl---n~ftKatpLs 222 (260)
T KOG1636|consen 162 ATKEGVKFSA-KGDIGTASITLSQCTAVDKPE-----EAVKIE----------MNEPVTLTFALKYL---NQFTKATPLS 222 (260)
T ss_pred EecceeEEEe-cccccceeEEEccCCCCCCcc-----ceEEEE----------ecCcchhhhHHHHH---HHhhcccccc
Confidence 9999999985 899999999999987765432 346653 56799999999999 888888776
Q ss_pred -eEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEecccc
Q 038865 245 -DIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATMLVS 285 (345)
Q Consensus 245 -~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~~~ 285 (345)
.|.++++. ..|++|+ |.+++.+ ..+|||||+.++
T Consensus 223 ~rV~lsls~-~~P~~ve--y~i~~~g----~lr~YLAPKieD 257 (260)
T KOG1636|consen 223 DRVTLSLSS-EVPVVVE--YKIEDMG----HLRYYLAPKIED 257 (260)
T ss_pred ceEEEEecC-CCcEEEE--EecccCc----eEEEEEccccCC
Confidence 57777774 4999999 8898842 779999999985
No 4
>PTZ00113 proliferating cell nuclear antigen; Provisional
Probab=100.00 E-value=9e-33 Score=261.09 Aligned_cols=261 Identities=13% Similarity=0.217 Sum_probs=215.8
Q ss_pred eeEEecccHHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHh
Q 038865 2 EFAVSGNALKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVL 81 (345)
Q Consensus 2 ~~~l~~~~~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vf 81 (345)
=|.+...+.+.|++++.||++|.+|++|+|+++||+|||||+||+|++++.+++++|++|+|+++ ..++|++..|.+||
T Consensus 1 Mfea~~~~a~~~K~i~eal~~lv~e~~f~~t~~Gi~lqamD~shVaLv~l~l~~~~FeeY~cd~~-~~lGvn~~~l~KIL 79 (275)
T PTZ00113 1 MLEAKLNNASVLRRLFECIKDLVSDGNIDFDETGLKLQALDGNHVALVHLKLHDSGFSHYRCDRE-RALGINIASVTKVF 79 (275)
T ss_pred CeEEEeccHHHHHHHHHHHHHHhceEEEEECCCeEEEEEECCCcEEEEEEEeCHHhCeEEecCCC-cEEEEEHHHHHHHH
Confidence 07888899999999999999999999999999999999999999999999999999999999985 88999999999999
Q ss_pred cCCCCccceEEEEecCCCCCeEEEEEEeCC-CeEEEEEeeecccCcccccccCCC--CCceEEEEcchhHHHHHhhhcCC
Q 038865 82 RTPTASIDNLTVQLPNSDAPKVQWTLKCYN-GMKKAYWITCNVEPDIQHLSLDRR--RFPSNFVVRPRDLNRLLSNFQSS 158 (345)
Q Consensus 82 k~~~~~vd~~~i~l~d~d~~~L~~~l~c~~-gI~Kt~~L~~~~~~~~~~~~~~~~--~~~~~l~i~~~~L~~~l~~F~~~ 158 (345)
|+ +++-|.++|+. +.+.++|.|++.... +.+++|.|++.+ .+.+++.+|.. .|++.++|++..|++++++....
T Consensus 80 k~-~~~~D~l~l~~-~~~~~~l~i~~~~~~~~~~~~f~l~L~d-i~~e~~~iPe~~~e~~~~v~m~s~~f~~i~rdl~~v 156 (275)
T PTZ00113 80 KL-CSNNDSVLIQS-EEDKDNINFVFENNVEDKVSSFSLKLMS-IEQDALSIPENEEGFDAEVTLSSKELTNICRQMNEF 156 (275)
T ss_pred Hh-CCCCCEEEEEE-cCCCCEEEEEEEcCCCceEEEEEEEccc-cCccccCCCCCCCCccEEEEEEHHHHHHHHHHHHHc
Confidence 99 78999999987 447789999997654 788999999985 67777788876 79999999999999999999999
Q ss_pred cceEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHHHHHHHhh
Q 038865 159 LQEITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELKAFLSF 238 (345)
Q Consensus 159 ~eeItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefkail~f 238 (345)
.+.|+|.++++.+.|+ +.|+.|...+.++.......+ ++..++. +.+++..+|+++||+.|..
T Consensus 157 gd~V~i~~~~~~v~f~-a~Gd~g~~~i~l~~~~~~~~~--------------~~~~~~~-v~~~~~~~ysl~YL~~f~K- 219 (275)
T PTZ00113 157 SDTVKIEIDSNSIKFT-TQGDLGDGEVVLKPRPPTSED--------------DCGVTIK-VRKPIKQSYATKYLNMFAK- 219 (275)
T ss_pred CCEEEEEEeCCEEEEE-EeccCcEEEEEEecCCCCCCc--------------cceEEEE-ecCceeeEEhHHHHHHhhc-
Confidence 9999999998776666 356777666666554321111 1222333 5788999999999966665
Q ss_pred hccCCCeEEEEeeCCCCcEEEeeeccCCC--CC-----CCceEEEEEEEecccccc
Q 038865 239 CEGCEVDIHLFFDKAGEPILMAPKFGLDD--GS-----GSNFDATLVLATMLVSQL 287 (345)
Q Consensus 239 ae~~~~~i~i~f~~~G~Pl~~~~~f~l~d--~~-----~~~~~a~fvLAT~~~~~~ 287 (345)
|-.++-.|.|+|+ .+.|+.++ |.+++ ++ ..+ .+.|+|||+.+++-
T Consensus 220 a~~ls~~V~l~l~-~d~Pl~le--y~i~~~~~~~~~~~~~G-~l~fyLAPkie~~~ 271 (275)
T PTZ00113 220 SGCLSDVVTLGLS-DNRPIEVK--YEIKDTSPDARHTHKLG-EVKFFLAPKMDDDM 271 (275)
T ss_pred cccCCCeEEEEEc-CCCCEEEE--EEeccccccccccCCcc-EEEEEEcCccCccc
Confidence 3345668999999 55999999 88852 10 013 78999999998643
No 5
>PHA03383 PCNA-like protein; Provisional
Probab=100.00 E-value=4.9e-32 Score=254.83 Aligned_cols=250 Identities=10% Similarity=0.212 Sum_probs=208.1
Q ss_pred eEEecccHHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhc
Q 038865 3 FAVSGNALKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLR 82 (345)
Q Consensus 3 ~~l~~~~~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk 82 (345)
|++...+.+.|+++++||+++.+|++|+++++||.|||||+||+|++.+.++++.|++|+|+++ ..++|++..|.+|||
T Consensus 8 fe~~~~~a~~~K~iieai~~lv~e~~f~~t~~Gi~lqamD~shVaLv~l~L~~~~F~~Y~~d~~-~~iGv~~~~l~KILk 86 (262)
T PHA03383 8 FHIRTIQGSVIKSLFDVLKEILHDVNIFFRPTGVYISALDGAKVSLVHMKLDAESFEEYHCDQT-YEIGVNVSNMFKLLR 86 (262)
T ss_pred EEEEecchHHHHHHHHHHHHHhceEEEEECCCcEEEEEECCCcEEEEEEEeCHHhCceEecCCc-eEEEEEHHHHHHHHh
Confidence 6777889999999999999999999999999999999999999999999999999999999984 779999999999999
Q ss_pred CCCCccceEEEEecCCCCCeEEEEEEeCC-CeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHHHhhhcCCcce
Q 038865 83 TPTASIDNLTVQLPNSDAPKVQWTLKCYN-GMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRLLSNFQSSLQE 161 (345)
Q Consensus 83 ~~~~~vd~~~i~l~d~d~~~L~~~l~c~~-gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~F~~~~ee 161 (345)
+ +++-|.+++++.+.++++|.|.+.... +.+++|.|++.+ .+.+++.+|+..|++.++|++..|++++++....++.
T Consensus 87 ~-a~~~D~l~l~~~~~~~~~l~i~~~~~~~~~~~~f~l~Lid-i~~e~l~iP~~e~~~~v~m~s~~f~~i~kdl~~igD~ 164 (262)
T PHA03383 87 T-AGSHDSILFRYLKNSPHFLEITIQNFEKNSLTKFQLKLIE-IDSSRIEVPDVEFDTIIILPSNYFQRLCRDMSNITDD 164 (262)
T ss_pred c-cCCCCEEEEEecCCCCCEEEEEEEeCCCCcEEEEEEEccc-cCcccCCCCCCCccEEEEEEHHHHHHHHHHHHHcCCe
Confidence 9 789999999853446789999997644 689999999985 7888899999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCCC---cccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHHHHHHHhh
Q 038865 162 ITVIATEPTSLPSD---AASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELKAFLSF 238 (345)
Q Consensus 162 Itl~~t~~~~~~s~---~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefkail~f 238 (345)
|+|.++++.+.|+. +.|+.|...+.+++..+. +... ..+++++.+|+++||+.|..
T Consensus 165 v~i~~~~~~v~f~~~~~~~Gd~~~~~~~~~~~~~~------------------~v~~--~~~~~~~~~ysl~YL~~~~K- 223 (262)
T PHA03383 165 LEITKKGKEVSFRSDYTCVTDFASQETIIGDSDNG------------------QITC--NESPDYTGKFSLKYLTSFTK- 223 (262)
T ss_pred EEEEEeCCEEEEEEcccccccccceEEEecCCCCC------------------ceEE--ecCCceEEEEeHHHHHHhhc-
Confidence 99999876555552 345544444444322110 1111 12467899999999977666
Q ss_pred hccCCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEecc
Q 038865 239 CEGCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATML 283 (345)
Q Consensus 239 ae~~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~ 283 (345)
|-.++-.|+++|+ .+.|+.++ |.+.++ + .+.|+|||+.
T Consensus 224 a~~ls~~V~i~l~-~d~Pl~le--y~i~~~---G-~l~fyLAPri 261 (262)
T PHA03383 224 ASGMSSSVEIYLK-ESNPLILK--YNVGSL---G-NLKFVIAPKV 261 (262)
T ss_pred cccCCCeEEEEEc-CCCCEEEE--EEeCCC---c-EEEEEEcccc
Confidence 4445678999999 66999999 888653 2 7899999985
No 6
>TIGR00590 pcna proliferating cell nuclear antigen (pcna). All proteins in this family for which functions are known form sliding DNA clamps that are used in DNA replication processes. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.1e-31 Score=252.61 Aligned_cols=256 Identities=18% Similarity=0.280 Sum_probs=214.9
Q ss_pred eEEecccHHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhc
Q 038865 3 FAVSGNALKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLR 82 (345)
Q Consensus 3 ~~l~~~~~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk 82 (345)
|.+...+.+.|++++.||+++.+|++|+++++||.++|||+||+|++.+.++++.|++|+|+++ ..++|++..|.+|||
T Consensus 2 fea~~~~a~~~k~i~eai~~lv~e~~~~~t~~Gi~~~amD~s~Valv~l~l~~~~F~~Y~~d~~-~~~gv~l~~l~kiLk 80 (259)
T TIGR00590 2 FEARLEQASLLKKILEAIKDLVNDANFDCSESGISLQAMDSSHVSLVSLTLRSEGFDTYRCDRN-LALGVNLTSLSKILK 80 (259)
T ss_pred eEEEEccHHHHHHHHHHHHHHhceeeEEECCCeEEEEEEcCCcEEEEEEEcCHHhCceEecCCc-eEEEEEHHHHHHHHh
Confidence 7788889999999999999999999999999999999999999999999999999999999985 899999999999999
Q ss_pred CCCCccceEEEEecCCCCCeEEEEEEeC-CCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHHHhhhcCCcce
Q 038865 83 TPTASIDNLTVQLPNSDAPKVQWTLKCY-NGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRLLSNFQSSLQE 161 (345)
Q Consensus 83 ~~~~~vd~~~i~l~d~d~~~L~~~l~c~-~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~F~~~~ee 161 (345)
+ .++-|.++|+. +.+.++|.|.+... .|.+++|.|++++ .+.+++.+|+..|+++++|++..|++++++.....+.
T Consensus 81 ~-~~~~d~l~l~~-~~~~~~l~i~~~~~~~~~~~~f~l~l~d-~~~e~l~iP~~e~~~~v~m~s~~f~~~~kdl~~v~d~ 157 (259)
T TIGR00590 81 C-ANNEDIVTLKA-EDNADTLILVFESPKQDKISDYELKLMD-IDVEHLGIPEQEYDCVVEMPSSEFARICRDLSQFSDS 157 (259)
T ss_pred c-cCCCCEEEEEe-cCCCCEEEEEEEcCCCCeEEEEEEEeee-cccccCCCCCCceeEEEEEEHHHHHHHHHHHHHcCCE
Confidence 9 68899999987 44678999999764 5789999999985 6778889999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHHHHHHHhhhcc
Q 038865 162 ITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELKAFLSFCEG 241 (345)
Q Consensus 162 Itl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefkail~fae~ 241 (345)
|+|.++++...|+. .|+.|...+.++...+... + ++..++. +++|++.+|+++||+.+.. |-+
T Consensus 158 v~i~~~~~~~~f~~-~Gd~g~~~~~~~~~~~~~~-------------~-~~~~~i~-~~~~~~~~y~l~YL~~~~K-a~~ 220 (259)
T TIGR00590 158 VVISCTKEGVKFSA-KGDIGSGNVKLKQTSDTDK-------------E-EEAVTIE-MKEPVTLTFAIKYLNLFTK-ATP 220 (259)
T ss_pred EEEEEeCCEEEEEE-EecccEEEEEEecCCCCCC-------------C-cceEEEE-ecCceeeeeeHHHHHHhhh-hcc
Confidence 99999876555553 4555555555544432221 1 1233333 6789999999999988777 444
Q ss_pred CCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEeccccc
Q 038865 242 CEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATMLVSQ 286 (345)
Q Consensus 242 ~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~~~~ 286 (345)
++-.|+++|+ .+.||.++ |.+.++ + .++|+|||+.+++
T Consensus 221 ls~~V~l~~~-~~~Pl~l~--y~i~~~---g-~l~f~lAPrie~~ 258 (259)
T TIGR00590 221 LSDRVTLSMS-NDVPLVVE--YKIKDM---G-FLRFFLAPKIEDE 258 (259)
T ss_pred CCCeEEEEEc-CCCCEEEE--EEeCCC---e-EEEEEEcCccCCC
Confidence 5679999999 55999999 888653 2 6799999999864
No 7
>PLN00057 proliferating cell nuclear antigen; Provisional
Probab=100.00 E-value=1.2e-31 Score=252.84 Aligned_cols=257 Identities=14% Similarity=0.231 Sum_probs=214.0
Q ss_pred eEEecccHHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhc
Q 038865 3 FAVSGNALKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLR 82 (345)
Q Consensus 3 ~~l~~~~~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk 82 (345)
|.+...+.+.|++++.||+++.+|++|+++++||.+|||++||+|++.+.++++.|++|+|++ +..++|++..|.+|||
T Consensus 2 f~a~~~~a~~~k~i~~ai~~lvde~~~~~t~~Gi~~~amD~s~Valv~l~l~~~~F~eY~~d~-~~~~gv~l~~l~kiLk 80 (263)
T PLN00057 2 LEARLVQGSLLKKVLEAIKDLVSDANFDCSETGLSLQAMDSSHVALVALLLRADGFEHYRCDR-NLSMGINLANMSKILK 80 (263)
T ss_pred eEEEEcchHHHHHHHHHHHHHhheeEEEEcCCeEEEEEEcCCcEEEEEEEeChhcCeEEecCC-ceEEEEEHHHHHHHHh
Confidence 778888999999999999999999999999999999999999999999999999999999998 4889999999999999
Q ss_pred CCCCccceEEEEecCCCCCeEEEEEEe-CCCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHHHhhhcCCcce
Q 038865 83 TPTASIDNLTVQLPNSDAPKVQWTLKC-YNGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRLLSNFQSSLQE 161 (345)
Q Consensus 83 ~~~~~vd~~~i~l~d~d~~~L~~~l~c-~~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~F~~~~ee 161 (345)
+ .++-|.|.|+. +.+.++|.|.+.. +.|.+++|.|++++ .+.+++.+|+..|+++++|++..|++++++....++.
T Consensus 81 ~-~~~~d~l~l~~-~~~~~~l~i~~~~~~~~~~~~f~l~l~d-~~~e~l~iP~~e~~~~v~m~s~~f~~~~kdl~~vsd~ 157 (263)
T PLN00057 81 C-AGNDDIITIKA-DDGGDTVTFMFESPKQDRISDFELKLMD-IDSEHLGIPETEYSAIVRMPSAEFQRICKDLSSIGDT 157 (263)
T ss_pred c-cCCCCEEEEEe-cCCCCEEEEEEEcCCCceEEEEEEEeee-cCcccCCCCCCceeEEEEEEHHHHHHHHHHHHHcCCE
Confidence 9 78999999987 4467899999976 46899999999985 6778889999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHHHHHHHhhhcc
Q 038865 162 ITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELKAFLSFCEG 241 (345)
Q Consensus 162 Itl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefkail~fae~ 241 (345)
|+|.++++...|+. .|+.|...+.++...+...+ |+...+. ++++++.+|+++||+.++. |-.
T Consensus 158 v~i~~~~~~~~f~~-~Gd~g~~~~~l~~~~~~~~~--------------~~~~~i~-~~e~~~~~y~l~YL~~~~K-a~~ 220 (263)
T PLN00057 158 VVISVTKEGVKFST-SGDIGTANIVLRQNTTVDKP--------------EEKTVIE-MQEPVSLTFALRYLNSFTK-ATP 220 (263)
T ss_pred EEEEEeCCEEEEEE-EecCcEEEEEEecCCCCCCc--------------cceEEEE-ecCceEEEEhHHHHHHhhc-ccc
Confidence 99999876555543 44555445544443221110 1222233 5788999999999988777 444
Q ss_pred CCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEecccccc
Q 038865 242 CEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATMLVSQL 287 (345)
Q Consensus 242 ~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~~~~~ 287 (345)
++-.|+++|+ .+.||.++ |.+.++ + .++|+|||+.+++-
T Consensus 221 ls~~V~i~~~-~~~Pl~l~--y~l~~~---g-~l~f~LAPri~~~~ 259 (263)
T PLN00057 221 LSDTVTLSLS-KELPVVVE--YKIAEM---G-YIRYYLAPKIEEDE 259 (263)
T ss_pred CCCeEEEEEc-CCCCEEEE--EEeCCC---e-EEEEEEcCCCCCcc
Confidence 6779999999 55999999 888543 3 77999999998643
No 8
>PTZ00483 proliferating cell nuclear antigen; Provisional
Probab=100.00 E-value=9.5e-31 Score=246.12 Aligned_cols=246 Identities=14% Similarity=0.207 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhcCCCCccc
Q 038865 10 LKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLRTPTASID 89 (345)
Q Consensus 10 ~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk~~~~~vd 89 (345)
.+.|+++++||+++.+|++|+|+++||.|||||+||+|++.+.++++.|++|+|+++ ..++|++..|.||||+ +++-|
T Consensus 8 a~~lK~i~eai~~lv~e~~f~~~e~Gi~lqAmD~shVaLV~l~L~~~~Fe~Y~cd~~-~~lGinl~~l~KiLk~-a~~~D 85 (264)
T PTZ00483 8 GMFLRRLFETLKDICTDVSIDCSENGLKMQAMDNSHISLIHLNLAPDFFQLYRCDKP-CVLGLNISFMLKILSV-VKEKS 85 (264)
T ss_pred HHHHHHHHHHHHHHhheeEEEECCCcEEEEEECCCcEEEEEEEcCHHhCeEEecCCC-eEEEEEHHHHHHHHhh-cCCCC
Confidence 699999999999999999999999999999999999999999999999999999985 6799999999999999 78999
Q ss_pred eEEEE-ecCCCCCeEEEEEEeCCC------eEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHHHhhhcCCcceE
Q 038865 90 NLTVQ-LPNSDAPKVQWTLKCYNG------MKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRLLSNFQSSLQEI 162 (345)
Q Consensus 90 ~~~i~-l~d~d~~~L~~~l~c~~g------I~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~F~~~~eeI 162 (345)
.++|+ ..+.+...+.|++....+ .+.+|.|++++ ++.+++.+|+..|+..++|++..|++++++....+|.|
T Consensus 86 ~l~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~f~l~Lid-i~~e~l~iP~~e~~~~v~m~s~~f~~i~kdl~~vsD~v 164 (264)
T PTZ00483 86 TIYLFRGDNTEDPVLNIRIIEEEGQNSLESDSLEAQVKLIN-VQREHLEIPQCEYHCKCVMNSKKFQEFAKYLHSIGDTV 164 (264)
T ss_pred EEEEEeccCCCCceEEEEEeccccccccccceEEEEEEccc-cCcccCCCCCCCccEEEEEEHHHHHHHHHHHHHcCCEE
Confidence 99997 433334567776755442 56689999985 78899999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHHHHHHHhhhccC
Q 038865 163 TVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELKAFLSFCEGC 242 (345)
Q Consensus 163 tl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefkail~fae~~ 242 (345)
+|.++++++.|+. .|+.|...+.++ . +.. .+.+ . +++|++.+|++|||+.|.. |-.+
T Consensus 165 ~i~~~~~~v~f~a-~Gd~~~~~~~l~-~-~~~---------~v~~---------~-~~~~v~~~fsl~YL~~f~K-a~~l 221 (264)
T PTZ00483 165 SISMKKDEMRLET-EGEGIKASKQFH-N-DVG---------DVRV---------T-STESLSQEFATRYLVLFSK-ATSL 221 (264)
T ss_pred EEEEECCEEEEEE-eecCcEEEEEEc-c-CCC---------ceEE---------E-ecCcchheehHHHHHHhhc-cccC
Confidence 9999987655553 455554444442 1 000 0121 2 5789999999999966665 3345
Q ss_pred CCeEEEEeeCCCCcEEEeeeccCCC----CCCCceEEEEEEEecccc
Q 038865 243 EVDIHLFFDKAGEPILMAPKFGLDD----GSGSNFDATLVLATMLVS 285 (345)
Q Consensus 243 ~~~i~i~f~~~G~Pl~~~~~f~l~d----~~~~~~~a~fvLAT~~~~ 285 (345)
+-.|+|+|+ ++.|+.++ |.+.+ ++.++ .+.|+|||+.++
T Consensus 222 sd~V~i~l~-~~~Pl~le--y~i~~~~~~~~~~G-~l~fyLAPrie~ 264 (264)
T PTZ00483 222 ADEVSINLS-AGIPLSVK--FNFKDPLTDLQDSS-FINFYLAPNIEE 264 (264)
T ss_pred CCeEEEEEc-CCCCEEEE--EEecccccCCCCce-EEEEEEccccCC
Confidence 668999999 66999999 88842 00123 679999999863
No 9
>cd00577 PCNA Proliferating Cell Nuclear Antigen (PCNA) domain found in eukaryotes and archaea. These polymerase processivity factors play a role in DNA replication and repair. PCNA encircles duplex DNA in its central cavity, providing a DNA-bound platform for the attachment of the polymerase. The trimeric PCNA ring is structurally similar to the dimeric ring formed by the DNA polymerase processivity factors in bacteria (beta subunit DNA polymerase III holoenzyme) and in bacteriophages (catalytic subunits in T4 and RB69). This structural correspondence further substantiates the mechanistic connection between eukaryotic and prokaryotic DNA replication that has been suggested on biochemical grounds. PCNA is also involved with proteins involved in cell cycle processes such as DNA repair and apoptosis. Many of these proteins contain a highly conserved motif known as the PIP-box (PCNA interacting protein box) which contains the sequence Qxx[LIM]xxF[FY].
Probab=99.95 E-value=8.3e-25 Score=202.12 Aligned_cols=245 Identities=17% Similarity=0.268 Sum_probs=203.0
Q ss_pred ecccHHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhcCCC
Q 038865 6 SGNALKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLRTPT 85 (345)
Q Consensus 6 ~~~~~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk~~~ 85 (345)
...+++.|++++++|+++.++++|++.++||.+.+.|++|+|++.+.+.+++|+.|+++. ...|+|++|+|+.++|..
T Consensus 2 ~~~~~~~l~~~~~~l~~i~~~v~~~~~~~gl~~~a~d~~r~~~~~~~l~~~~F~~y~~~~-~~~~~i~~k~l~~~lk~~- 79 (248)
T cd00577 2 TLSNAKLLKKIVDALSKLVDEANFDITEDGISLQAMDSSHVALVSLFLPKELFEEYRCDE-EISLGVNLKSLLKILKCA- 79 (248)
T ss_pred cccchHHHHHHHHHHHHHhcEEeEEECCCceEEEEEcCCcEEEEEEEechhhCeEEecCC-ceEEEEEHHHHHHHHhhC-
Confidence 357899999999999999999999999999999999999999999999999999999986 599999999999999994
Q ss_pred CccceEEEEecCCCCCeEEEEEEeCC-CeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHHHhhhcCCcceEEE
Q 038865 86 ASIDNLTVQLPNSDAPKVQWTLKCYN-GMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRLLSNFQSSLQEITV 164 (345)
Q Consensus 86 ~~vd~~~i~l~d~d~~~L~~~l~c~~-gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~F~~~~eeItl 164 (345)
.+.+.|.|.+. .+ +.+.|++.+.+ |+.++|.+++.+ .+......++..+++.++|+++.|.++++++....++|+|
T Consensus 80 ~~~~~v~i~~~-~~-~~l~i~~~~~~~~~~~~~~~~li~-~~~~~~~~~~~~~~~~i~i~~~~L~~~i~~~~~~~~~i~i 156 (248)
T cd00577 80 GNEDCVTLRAD-DE-DPLKILFESSKGDVTSEFSLKLMD-IDSEQLPIPELEYDATVTLPSDELKDIVRDLESISDSVTI 156 (248)
T ss_pred CCCCEEEEEec-CC-CeEEEEEEcCCCceEEEEEEEccc-cCcccCCCCCCceeEEEEEEHHHHHHHHHHHHHcCCEEEE
Confidence 56789999984 23 78999999877 688999999986 4445444467889999999999999999999999999999
Q ss_pred EEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHHHHHHHhhhccCCC
Q 038865 165 IATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELKAFLSFCEGCEV 244 (345)
Q Consensus 165 ~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefkail~fae~~~~ 244 (345)
.++++ .+.+++..+.+. ...+....+.. .+..|. .+++++++|+.|||+.++...+. +.
T Consensus 157 ~~~~~--------------~l~lss~~~~~~----~~~~~~~~~~~-~~~~~~-~~~~~~~~fn~~yL~~~l~~~~~-s~ 215 (248)
T cd00577 157 SASKD--------------GFKFSAEGELGG----ASVTLLPKDSD-LLVTIE-CSEPVSSTYSLKYLKDFTKAAPL-SD 215 (248)
T ss_pred EEcCC--------------EEEEEEeecCCc----eEEEEecCCCC-ceEEEE-eCCceEEEEhHHHHHHHhhhccc-CC
Confidence 99763 577877765221 11122222222 344444 68899999999999999999885 57
Q ss_pred eEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEecc
Q 038865 245 DIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATML 283 (345)
Q Consensus 245 ~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~ 283 (345)
.|.++|+.+ .|+.++ |.+.+ .-.++|+|||+.
T Consensus 216 ~v~i~~~~~-~p~~i~--~~~~~----~~~~~f~lap~~ 247 (248)
T cd00577 216 KVTLSFGSD-GPLSLE--FKIAD----GGHLTFYLAPKI 247 (248)
T ss_pred eEEEEEcCC-CCEEEE--EEcCC----CcEEEEEEcccc
Confidence 999999988 999999 66643 227899999985
No 10
>PRK01115 DNA polymerase sliding clamp; Validated
Probab=99.91 E-value=2e-21 Score=180.95 Aligned_cols=245 Identities=15% Similarity=0.238 Sum_probs=195.5
Q ss_pred EEecccHHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhcC
Q 038865 4 AVSGNALKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLRT 83 (345)
Q Consensus 4 ~l~~~~~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk~ 83 (345)
.+...+.+.|+++++||+.+.++++|++.++||.+.|+|..|.|++.+.+.+..|+.|++..+ ..++++++.|.+++|.
T Consensus 3 ~~~~~~~~~lk~i~~~i~~l~~~v~~~~~~~~l~~~atD~~Rla~~~~~~~~~~f~~~~~~~~-~~~~v~l~~l~~il~~ 81 (247)
T PRK01115 3 KAVYPDAKDFKYIIDAISKLVDEAKFKFTEDGIRLRALDPAKVAMVDLELPKEAFEEYEVDEE-EKIGVDLEDLKKILKR 81 (247)
T ss_pred EEEecchHHHHHHHHHHHHHhceEEEEECCCcEEEEEECCccEEEEEEEeCHHhCccEecCCC-eEEEEEHHHHHHHHhh
Confidence 455668899999999999999999999999999999999999999999999999999999874 5699999999999998
Q ss_pred CCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHHHhhhcCCcceEE
Q 038865 84 PTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRLLSNFQSSLQEIT 163 (345)
Q Consensus 84 ~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~F~~~~eeIt 163 (345)
.++-+.+.|.+. .+.+.+.|++.. +.+.+|.+++.+ .+.....+++..+++.++++.+.|.++++......++|+
T Consensus 82 -~~~~~~v~i~~~-~~~~~l~~~~~~--~~~~~~~~~Lie-g~~p~~~v~p~~~~~~i~~~~~~l~~~~~r~~~~~~~v~ 156 (247)
T PRK01115 82 -AKKGDKLELELD-EEENKLKITFGG--EKTREFSLPLLD-VSSEEPPEPNLELPVKAVILGDDLKDAIKDAELVSDHIE 156 (247)
T ss_pred -CCCCCEEEEEEc-CCCCEEEEEEec--CcEEEEEEEeec-cCCCCCCCCCCcccEEEEEEHHHHHHHHHHHHhcCCeEE
Confidence 456678999984 356788888764 788999999886 443335566678999999999999999999998889999
Q ss_pred EEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHHHHHHHhhhccCC
Q 038865 164 VIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELKAFLSFCEGCE 243 (345)
Q Consensus 164 l~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefkail~fae~~~ 243 (345)
|.++++ .+.+++..+ +. ...++.+..+ .|.+|. ..+++.++|++|||+.++.-++. +
T Consensus 157 i~~~~~--------------~l~lsa~~~-g~-----a~~~i~~~~~-~~~~~~-g~e~~~i~fn~~YL~d~lk~~~~-~ 213 (247)
T PRK01115 157 LEADED--------------KFYIEAEGE-GE-----DEVELSLDSG-PLIELS-VEEPAKSSYSLDYLKDMVKATSA-S 213 (247)
T ss_pred EEEeCC--------------EEEEEEEeC-Cc-----eEEEEecCCC-ceEEEE-ecCceeEEEhHHHHHHhhccccC-C
Confidence 998753 677777654 32 2234444332 466675 33789999999999666654443 2
Q ss_pred CeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEeccc
Q 038865 244 VDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATMLV 284 (345)
Q Consensus 244 ~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~~ 284 (345)
-.|.+.|..+ .|++++ |.+.++ + ...|+|||+.+
T Consensus 214 ~~V~l~~~~~-~P~~l~--~~~~~~--~--~~~~~i~P~~~ 247 (247)
T PRK01115 214 DEVTIEFGSD-MPLKLE--FEIAGG--G--KVTYLLAPRIE 247 (247)
T ss_pred CeEEEEECCC-CCEEEE--EEeCCC--e--EEEEEEecccC
Confidence 3788999764 999998 555543 2 56899999864
No 11
>PF00705 PCNA_N: Proliferating cell nuclear antigen, N-terminal domain; InterPro: IPR022648 Proliferating cell nuclear antigen (PCNA), or cyclin, is a non-histone acidic nuclear protein [] that plays a key role in the control of eukaryotic DNA replication []. It acts as a co-factor for DNA polymerase delta, which is responsible for leading strand DNA replication []. The sequence of PCNA is well conserved between plants and animals, indicating a strong selective pressure for structure conservation, and suggesting that this type of DNA replication mechanism is conserved throughout eukaryotes []. In Saccharomyces cerevisiae (Baker's yeast), POL30, is associated with polymerase III, the yeast analog of polymerase delta. Homologues of PCNA have also been identified in the archaea (Euryarchaeota and Crenarchaeota) and in Paramecium bursaria Chlorella virus 1 (PBCV-1) and in nuclear polyhedrosis viruses. ; GO: 0003677 DNA binding, 0030337 DNA polymerase processivity factor activity, 0006275 regulation of DNA replication, 0043626 PCNA complex; PDB: 1U76_E 2ZVK_B 1VYJ_A 1UL1_B 3P87_D 2ZVM_C 2ZVL_A 1AXC_C 3VKX_A 3TBL_B ....
Probab=99.77 E-value=2.6e-17 Score=139.06 Aligned_cols=116 Identities=13% Similarity=0.253 Sum_probs=102.1
Q ss_pred eEEecccHHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhc
Q 038865 3 FAVSGNALKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLR 82 (345)
Q Consensus 3 ~~l~~~~~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk 82 (345)
|.+...+...|++++.||+++.+|++|+++++||.++|||++|+|++.+.++++.|++|+|++ +..++|+++.+.++||
T Consensus 2 fea~~~~a~~~K~i~eal~~lv~e~~f~~~~~Gi~~~amD~s~Valv~l~l~~~~F~~Y~~d~-~~~igvnl~~l~kiLk 80 (127)
T PF00705_consen 2 FEAKFSDASLFKKIFEALKDLVDEANFEFTEDGISLQAMDPSHVALVDLELPSEAFEEYRCDK-ELSIGVNLSDLKKILK 80 (127)
T ss_dssp EEEEESSHHHHHHHHHHHTTTCSEEEEEEESSEEEEEEE-TTSSEEEEEEEEGGGSSEEEESS-SEEEEEEHHHHHHHHT
T ss_pred eEEEEcchHHHHHHHHHHHHHhhEEEEEEccCCEEEEEECCCcEEEEEEEechhcceEEEcCC-CEEEEEEHHHHHHHHh
Confidence 455667889999999999999999999999999999999999999999999999999999998 4899999999999999
Q ss_pred CCCCccceEEEEecCCCCCeEEEEEEeCC-CeEEEEEeee
Q 038865 83 TPTASIDNLTVQLPNSDAPKVQWTLKCYN-GMKKAYWITC 121 (345)
Q Consensus 83 ~~~~~vd~~~i~l~d~d~~~L~~~l~c~~-gI~Kt~~L~~ 121 (345)
+ +++-|.+.++.+ .+.+.|.+.+.... +..++|.+.+
T Consensus 81 ~-~~~~D~l~l~~~-~~~~~l~i~~~~~~~~~~~~~~~~l 118 (127)
T PF00705_consen 81 R-AKKDDSLELESD-EEPDKLNIVFENEKKGRVREFSLKL 118 (127)
T ss_dssp T-SSTTSEEEEEEE-SSSSEEEEEEEETTSSEEEEEEEEE
T ss_pred h-ccCCCEEEEEEe-CCCCEEEEEEEcCCCCeEEeeeeEE
Confidence 9 678899999985 46788999997766 6777555544
No 12
>PF02144 Rad1: Repair protein Rad1/Rec1/Rad17; InterPro: IPR003021 REC1 of Ustilago maydis plays a key role in regulating the genetic system of the fungus. REC1 mutants are very sensitive to UV light. Mutation leads to a complex phenotype with alterations in DNA repair, recombination, mutagenesis, meiosis and cell division []. The predicted product of the REC1 gene is a polypeptide of 522 amino acid residues with molecular mass 57kDa. The protein shows 3'--5' exonuclease activity, but only in cells over-expressing REC1 []. While it is distinguishable from the major bacterial nucleases, the protein has certain enzymatic features in common with epsilon, the proof-reading exonuclease subunit of Escherichia coli DNA polymerase III holoenzyme []. The rad1 gene of Schizosaccharomyces pombe comprises three exons and encodes a 37kDa protein that exhibits partial similarity to the REC1 gene of U. maydis []. The two genes share putative functional similarities in their respective organisms.; GO: 0003684 damaged DNA binding, 0008853 exodeoxyribonuclease III activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3G65_B 3GGR_C 3A1J_C.
Probab=99.40 E-value=1.9e-10 Score=109.34 Aligned_cols=229 Identities=16% Similarity=0.227 Sum_probs=159.1
Q ss_pred eEEecccHHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeee------------cCCEEEE
Q 038865 3 FAVSGNALKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTV------------SGAQVQC 70 (345)
Q Consensus 3 ~~l~~~~~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~------------~~~~~~~ 70 (345)
|+..-.++|.|..+|.||.-.. .+.++++++||.+. +.-+|+..+...++++.|+.|.+ +...+.+
T Consensus 2 f~A~~~~~~~l~~lL~~I~~~~-~a~v~is~~Gi~~~-vE~~~~~qa~a~l~k~LF~~Y~~~~~~~~~~~~~~~~~~~~F 79 (275)
T PF02144_consen 2 FSASTSNVRHLYQLLKCIAFKN-KATVEISEDGIKFT-VEDSKSIQASAFLDKSLFSEYTFNPPPDADDDDEEEEDEVSF 79 (275)
T ss_dssp EEEEES-THHHHHHHHTT-SSS-EEEEEEETTEEEEE-EEETTTEEEEEEEEGGGSSEEEE------------SSS-EEE
T ss_pred eEEEECCHHHHHHHHHhcccCC-eEEEEEcCCEEEEE-EECCcEEEEEEEEChhhceEEEEeccccccccccCCCCceEE
Confidence 5677789999999999999888 69999999999995 57999999999999999999999 3457899
Q ss_pred EEEchhhHHHhcCCCCcc---------------------ceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCcccc
Q 038865 71 SVLLKAVCAVLRTPTASI---------------------DNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQH 129 (345)
Q Consensus 71 ~i~~Ksll~vfk~~~~~v---------------------d~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~ 129 (345)
+|+++.|+..|.--..+. -.|.|+. +++..-|.+.|.. .|++-+..|+-.+..+...
T Consensus 80 ~I~L~~LlecL~ifg~~~~~~~~~~~~~~~~~~~~~~~~~~~~lsY-~g~G~pL~l~led-~gv~t~c~i~T~~~~~~~d 157 (275)
T PF02144_consen 80 GINLSALLECLNIFGSSDSSSSSSSSGGDPSRNNASGEPTSCRLSY-PGEGSPLVLILED-SGVTTTCEIRTYEPDDPLD 157 (275)
T ss_dssp EEEHHHHHHHHTTT-SS--TT-----------------EEEEEEEE-SSSCCEEEEEEEE-TTEEEEEEEEEE-------
T ss_pred EEEhHHHHHHHHHhCCCCCccccccccccccccccccCCceEEEEE-cCCCCeEEEEEEe-CCEEEEEEEEEecCCcccC
Confidence 999999977665321111 1789988 4677889999987 7888777775443345666
Q ss_pred cccCCCCCceEEEEcchhHHHHHhhhcCC-cceEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEec
Q 038865 130 LSLDRRRFPSNFVVRPRDLNRLLSNFQSS-LQEITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWID 208 (345)
Q Consensus 130 ~~~~~~~~~~~l~i~~~~L~~~l~~F~~~-~eeItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~ 208 (345)
..|+++...+++.|.+..|.+++.++... .++++|.+++. . ...+.|++..+-+. ++|.+-
T Consensus 158 ~~f~~~~~~~kiimks~~L~~al~eL~~~~~~~l~i~~s~~-~----------~p~f~l~s~G~~G~-------s~v~fp 219 (275)
T PF02144_consen 158 FPFDRSDVVNKIIMKSDWLRDALSELDWSNSEELTIYISPP-D----------KPHFRLSSKGPLGS-------SKVDFP 219 (275)
T ss_dssp ----TTTEEEEEEEEHHHHHHHHHTT-TS-CSEEEEEE-S--S----------SSSEEEEEEETTEE-------EEEEE-
T ss_pred cccccccceeEEEEEhHHHHHHHHHHhhccCCeEEEEEEeC-C----------CCEEEEEEEcCCCe-------EEEEEC
Confidence 78888888899999999999999999887 99999999873 1 12466666643222 445554
Q ss_pred CCcc-ceeecccC---CceEEEEEhHHHHHHHhhhccCCCeEEEEeeCCCC
Q 038865 209 PTEE-FVQYTHSG---DPVDVTFGVKELKAFLSFCEGCEVDIHLFFDKAGE 255 (345)
Q Consensus 209 ~~eE-F~~y~~~~---~~~~itF~LKefkail~fae~~~~~i~i~f~~~G~ 255 (345)
.+.+ ++.+. +. ++..-.|.++.||.+..--. +...+.++.+..|.
T Consensus 220 ~~~~~le~f~-~~~~~~~~~~~Y~f~~i~~~~kAl~-~ssKv~ir~d~~Gl 268 (275)
T PF02144_consen 220 NDSDVLETFE-CYDGEEPVISRYKFSLIKKAMKALK-ISSKVSIRIDENGL 268 (275)
T ss_dssp TTSTSEEEEE-E----S-EEEEEEHHHHCCHHHHHT-TSSEEEEEEESSS-
T ss_pred CCCCceeEEE-EeccCceEEEEEeHHHHHHHHHHhh-hccEEEEEeCCCcE
Confidence 4423 44443 33 44444599999988666444 45678888886663
No 13
>PF02747 PCNA_C: Proliferating cell nuclear antigen, C-terminal domain; InterPro: IPR022649 Proliferating cell nuclear antigen (PCNA), or cyclin, is a non-histone acidic nuclear protein [] that plays a key role in the control of eukaryotic DNA replication []. It acts as a co-factor for DNA polymerase delta, which is responsible for leading strand DNA replication []. The sequence of PCNA is well conserved between plants and animals, indicating a strong selective pressure for structure conservation, and suggesting that this type of DNA replication mechanism is conserved throughout eukaryotes []. In Saccharomyces cerevisiae (Baker's yeast), POL30, is associated with polymerase III, the yeast analog of polymerase delta. Homologues of PCNA have also been identified in the archaea (Euryarchaeota and Crenarchaeota) and in Paramecium bursaria Chlorella virus 1 (PBCV-1) and in nuclear polyhedrosis viruses. ; GO: 0003677 DNA binding, 0030337 DNA polymerase processivity factor activity, 0006275 regulation of DNA replication, 0043626 PCNA complex; PDB: 1IZ5_A 1IZ4_A 1GE8_A 1ISQ_A 3A2F_B 1RWZ_A 3P83_A 1RXM_A 1RXZ_A 1SXJ_F ....
Probab=99.28 E-value=4.3e-11 Score=101.19 Aligned_cols=127 Identities=18% Similarity=0.346 Sum_probs=91.3
Q ss_pred cCCCCCceEEEEcchhHHHHHhhhcCCcceEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCc
Q 038865 132 LDRRRFPSNFVVRPRDLNRLLSNFQSSLQEITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTE 211 (345)
Q Consensus 132 ~~~~~~~~~l~i~~~~L~~~l~~F~~~~eeItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~e 211 (345)
+|+..|++.++|++..|+++++++....|.|+|.+++++..|+. .|+.|...+.++.... ++..+
T Consensus 2 iP~~e~~~~v~m~S~~f~~~~kdl~~v~d~v~i~~~~~~~~f~~-~Gd~~~~~v~~~~~~~--------------~~~~~ 66 (128)
T PF02747_consen 2 IPDLEYDATVTMPSSEFKKICKDLSSVGDTVTISADKDSVIFSA-EGDIGSAEVEFKETES--------------SEDDE 66 (128)
T ss_dssp ---SS-SEEEEEEHHHHHHHHHHHHTTCSEEEEEEETTEEEEEE-EESSEEEEEEEEEEEE--------------ETTCT
T ss_pred CCCccceEEEEEEHHHHHHHHHHHHhcCCEEEEEEeCCEEEEEE-EeccCcEEEEEeeccc--------------ccccc
Confidence 56778999999999999999999999999999999987666653 4555555555543321 11111
Q ss_pred cceeecccCCceEEEEEhHHHHHHHhhhccCCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEec
Q 038865 212 EFVQYTHSGDPVDVTFGVKELKAFLSFCEGCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATM 282 (345)
Q Consensus 212 EF~~y~~~~~~~~itF~LKefkail~fae~~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~ 282 (345)
+..+.. +.++++.+|+||||+.|...+ .++-.|+|+|+. +.||.++ |.+.++ + .+.|+|||+
T Consensus 67 ~~~~i~-~~~~~~~~fsl~YL~~~~Ka~-~ls~~V~l~l~~-~~Pl~l~--f~~~~~---g-~l~f~LAPK 128 (128)
T PF02747_consen 67 ELIEIE-VKEPVSSSFSLDYLNDFSKAA-PLSDEVTLELGE-DMPLKLE--FELADG---G-SLKFYLAPK 128 (128)
T ss_dssp CESEEE-ESSEEEEEEEHHHHHHHGGGG-GTTSEEEEEEET-TSEEEEE--EEETTT---E-EEEEEE-BB
T ss_pred ccceee-eccceeeEEeHHHHHhhhccc-cCCceEEEEEcC-CCCEEEE--EEeCCC---e-EEEEEEcCC
Confidence 222223 567899999999997766544 356799999995 5999999 999875 3 789999985
No 14
>COG0592 DnaN DNA polymerase sliding clamp subunit (PCNA homolog) [DNA replication, recombination, and repair]
Probab=99.12 E-value=2.2e-09 Score=106.04 Aligned_cols=260 Identities=15% Similarity=0.240 Sum_probs=162.8
Q ss_pred eEEecccHHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhc
Q 038865 3 FAVSGNALKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLR 82 (345)
Q Consensus 3 ~~l~~~~~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk 82 (345)
+...|..+..+++.++.++++.++..+....+|+.+++|+++|++|...+++++-|..|.++.+...++++++.|.+++|
T Consensus 61 v~~~g~~~v~~k~l~dii~~L~de~~~~~~~~~~~~~~i~~~~s~f~l~~lp~e~Fp~~~~~~~~~~~~l~~~~Lk~ii~ 140 (364)
T COG0592 61 VEAEGEVAVPAKKLLDIISKLPDEAVFLVTEDGISLLAVDSGKSAFVLLTLPAEDFPEYPVDEEEVEFGLPTELLKKIIK 140 (364)
T ss_pred EecceeEEEEhHHHHHHHHhCCCCceEEEEecCCceEEEecCceEEEcCCCCHHHCCCCCCCCcCceEEecHHHHHHHHh
Confidence 34566778889999999999999999999999999999999999999999999999999999876789999999999999
Q ss_pred CCCCccceEEEEecCCCCCeEEEEEEeCC---CeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHHHhhhcC--
Q 038865 83 TPTASIDNLTVQLPNSDAPKVQWTLKCYN---GMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRLLSNFQS-- 157 (345)
Q Consensus 83 ~~~~~vd~~~i~l~d~d~~~L~~~l~c~~---gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~F~~-- 157 (345)
+...++.. ... +..-+.+.|.+.... --+..|+|.+.. +..+....+..+.++.+.+++++..+..
T Consensus 141 ~~~fa~~~--~e~-~~~lngv~~~i~~~~l~~vatd~~rla~~~------~~~~~~~~~~~viIp~k~l~el~k~~~d~~ 211 (364)
T COG0592 141 RTKFADSL--LET-RYELNGVLLEIEGTKLRLVATDGHRLAVEE------LEIPELEEDASVIIPAKTLKELIKLLKDAD 211 (364)
T ss_pred heeecccc--hhh-hhhcccEEEEEECCEEEEEEECCceEEEEE------eccccCCCCccEEEEhhHHHHHHHhCCCCC
Confidence 84333322 221 112244555554331 023445554432 2344555568999999999999955543
Q ss_pred -----CcceEEEEEcCCCCCCCC-cccccCCeEEEEE-eccC-----------C---------CCCC--CCceeE-EEEe
Q 038865 158 -----SLQEITVIATEPTSLPSD-AASEIGGKAVELR-SYID-----------P---------TKDN--DSTLHT-QLWI 207 (345)
Q Consensus 158 -----~~eeItl~~t~~~~~~s~-~~~~~g~~~v~lk-s~~e-----------~---------~~~~--~~~l~T-ev~I 207 (345)
..+.|.+.+.+ ...++. .+|+.+.-...+- .+.. . .++. ...... +++|
T Consensus 212 ~~~~~~sd~i~f~~~~-~~~~s~lieG~fpd~~~vip~~~~~~~~l~~~el~~al~r~~~l~~~~~~~~~~~~~~~~v~i 290 (364)
T COG0592 212 VEIFLVSDQIRFKAGE-TILFSKLIEGEFPDYERVIPKEFEKELTLDRLELKEALKRVYSLSYLKDRGKKLSLADGEVKL 290 (364)
T ss_pred eEEEEcCCeEEEEECC-EEEEEEEecccCCChhhcCCCCCceEEEEeHHHHHHHHHHHHHHHhcccCceEEEeeCCeEEE
Confidence 34455555433 111111 1222221111110 0000 0 0000 001111 3333
Q ss_pred cCCc-c---ceeecc---cCCceEEEEEhHHHHHHHhhhccC-CCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEE
Q 038865 208 DPTE-E---FVQYTH---SGDPVDVTFGVKELKAFLSFCEGC-EVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVL 279 (345)
Q Consensus 208 ~~~e-E---F~~y~~---~~~~~~itF~LKefkail~fae~~-~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvL 279 (345)
..+. + ..+... .|++.+|+|.++|+ +..-+++ +..+.+.|..+++|+++++. ++ . ...+++
T Consensus 291 ~~~~~~~g~~~eei~~~~~g~~~~I~fn~~yl---ld~l~~~~~~~v~~~~~~~~~p~~i~~~---~~---~--~~~~~i 359 (364)
T COG0592 291 SLGNDEPGKAEEEIDVGYTGEELKIGFNLAYL---LDVLKALDSEEVQFGFNDSSSPFLIRPE---EN---D--DFKYLI 359 (364)
T ss_pred EecCCCccceEEEEEeccCCceEEEEECHHHH---HHHHhcCCCCeEEEEEcCCCCcEEEEeC---CC---C--CceEEE
Confidence 3320 1 111111 25789999999999 5555554 45899999999999999842 22 2 457888
Q ss_pred Eecc
Q 038865 280 ATML 283 (345)
Q Consensus 280 AT~~ 283 (345)
+|+.
T Consensus 360 mP~r 363 (364)
T COG0592 360 MPMR 363 (364)
T ss_pred EEec
Confidence 8873
No 15
>PF04005 Hus1: Hus1-like protein; InterPro: IPR007150 Hus1, Rad1, and Rad9 are three evolutionarily conserved proteins required for checkpoint control in fission yeast. These proteins are known to form a stable complex in vivo []. Hus1-Rad1-Rad9 complex may form a PCNA-like ring structure, and could function as a sliding clamp during checkpoint control.; PDB: 3A1J_B 3G65_C 3GGR_B.
Probab=99.10 E-value=3e-07 Score=88.27 Aligned_cols=265 Identities=13% Similarity=0.211 Sum_probs=151.0
Q ss_pred CeeEEecccHHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEc-CCccEEEEEEeCcc-CCceeeecC---CEEEEEEEch
Q 038865 1 MEFAVSGNALKTFARCLACLSRIGNELVIQASSHQLAFHTLN-SSRSAYQSITFMPN-FFDVYTVSG---AQVQCSVLLK 75 (345)
Q Consensus 1 M~~~l~~~~~k~f~rai~~Lskigdel~ie~~~~gL~L~avN-sSrSA~~~~~f~~~-FF~~Y~~~~---~~~~~~i~~K 75 (345)
|+|...-.+++.|.+.+.+++|++...++..+++.|.|-..+ .+...-+...++.+ +|+.|++.+ +.+.+.++..
T Consensus 1 MKFka~i~~~~~~~~~~~~~~kl~k~~vlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~~F~~y~i~s~~~N~I~le~~~~ 80 (292)
T PF04005_consen 1 MKFKATISDIKLFKKFVSTISKLGKRCVLRLTPERLHFISTSDDSDGIQVWCELPQDSLFSEYRIQSASENEIYLEVNID 80 (292)
T ss_dssp -EEEEEEE-HHHHHHHHHHHHHH-SEEEEEE-SSEEEEEEE-SSTT--EEEEEEEGGGT-SEEEEE-SSSS-EEEEEEHH
T ss_pred CcceEEecCHHHHHHHHHHHHHhhCEEEEEEeCCEEEEEEecCCCCeEEEEEEEChhhcCcccEEEeCCCCEEEEEEcHH
Confidence 899988889999999999999999999999999999999886 55666666667775 999999953 6799999999
Q ss_pred hhHHHhcCCCCccceEEEEecCC-CCCeEEEEEEeCCC----eEEEEEeeeccc-----CcccccccCCCCCceEEEEcc
Q 038865 76 AVCAVLRTPTASIDNLTVQLPNS-DAPKVQWTLKCYNG----MKKAYWITCNVE-----PDIQHLSLDRRRFPSNFVVRP 145 (345)
Q Consensus 76 sll~vfk~~~~~vd~~~i~l~d~-d~~~L~~~l~c~~g----I~Kt~~L~~~~~-----~~~~~~~~~~~~~~~~l~i~~ 145 (345)
+|+.+||+. .+-..+.|+|... ...-|.|.+..... ..=+|.+|...- .+...+..+ ...-.+.+|+
T Consensus 81 ~L~raLrs~-~~a~~~~ikL~kk~~~p~L~~~~~~~~~~~~~~~v~hdiPV~vl~~~~~~~~~eP~~~--~~dv~i~LP~ 157 (292)
T PF04005_consen 81 SLLRALRSA-DNASSVKIKLTKKGRMPCLSFEITGTSSSGRSRIVVHDIPVRVLPRREWEELQEPMVP--DPDVSIYLPP 157 (292)
T ss_dssp HHHHHHCTC-SSCSEEEEEEE-S-SSSEEEEEEEE--SSST-EEEEEEEEBEE--GGGGGGGS---------SEEEE-S-
T ss_pred HHHHHHHhh-ccCceeEEehhhccCCcEEEEEEEeeccCCCccEEEEECCeEecCHHHHHHhhhcccC--CCCEEEECCC
Confidence 999999994 4444888888643 45678888765443 455677765321 122222222 1234567777
Q ss_pred -hhHHHHHhhhcCCcceEEEEEcCCCCC-CCCcccccCCeEEEEEeccCCCCC-CCCceeE-EE-EecC----Cccceee
Q 038865 146 -RDLNRLLSNFQSSLQEITVIATEPTSL-PSDAASEIGGKAVELRSYIDPTKD-NDSTLHT-QL-WIDP----TEEFVQY 216 (345)
Q Consensus 146 -~~L~~~l~~F~~~~eeItl~~t~~~~~-~s~~~~~~g~~~v~lks~~e~~~~-~~~~l~T-ev-~I~~----~eEF~~y 216 (345)
+.|+.+++.|....+.++|.++.++.- ++. ....+.+..+..+-.. ...+-+. .. ..+. .++-.+-
T Consensus 158 l~~l~~~veR~k~~s~~v~i~an~~G~L~L~v-----~t~~~~v~t~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (292)
T PF04005_consen 158 LKQLRSIVERMKNLSDYVTISANMNGELRLSV-----ETDSVSVETEFRGLENPPLDPAELNTVDQLPSEDDSDSDQQEE 232 (292)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEE-SSS-EEEEE-----E-SSEEEEEEE-S------------------------SSSSS-
T ss_pred HHHHHHHHHHHhccCceEEEEEECCCcEEEEE-----EeCcEEEEEEECCCCCCcccccccccccccccccccccccccc
Confidence 899999999999999999999863110 000 0112333333211100 0000000 00 0000 0000000
Q ss_pred cccCCceEEEEEhHHHHHHHhhhccCCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEE
Q 038865 217 THSGDPVDVTFGVKELKAFLSFCEGCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLA 280 (345)
Q Consensus 217 ~~~~~~~~itF~LKefkail~fae~~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLA 280 (345)
...++..+++..+|.|..++.--...+..+-+.+. .++-++|.. -+++ +....||+-
T Consensus 233 ~~~~~~~sV~Vd~K~~~~~l~~~~~~p~~vi~~I~-~~~~~vl~~--~~~~----~~~l~yyip 289 (292)
T PF04005_consen 233 RDPEEFASVRVDIKDLAKFLKSHQLSPSRVICCIC-HNKALVLHV--YLDE----DVSLTYYIP 289 (292)
T ss_dssp ------EEEEEEHHHHHHHHHH--S--SEEEEEEE-TTTEEEEEE--EE-T----TEEEEEEEE
T ss_pred CCCCcEEEEEEEHHHHHHhhCccccCCCEEEEEEc-cCCeEEEEE--EEcC----CEEEEEEEe
Confidence 01234578999999999999966665578888888 556676653 2322 337777763
No 16
>cd00140 beta_clamp Beta clamp domain. The beta subunit (processivity factor) of DNA polymerase III holoenzyme, refered to as the beta clamp, forms a ring shaped dimer that encircles dsDNA (sliding clamp) in bacteria. The beta-clamp is structurally similar to the trimeric ring formed by PCNA (found in eukaryotes and archaea) and the processivity factor (found in bacteriophages T4 and RB69). This structural correspondence further substantiates the mechanistic connection between eukaryotic and prokaryotic DNA replication that has been suggested on biochemical grounds.
Probab=98.92 E-value=8.9e-07 Score=86.49 Aligned_cols=220 Identities=11% Similarity=0.189 Sum_probs=149.5
Q ss_pred cHHHHHHHHHHHhhcCc---------eEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHH
Q 038865 9 ALKTFARCLACLSRIGN---------ELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCA 79 (345)
Q Consensus 9 ~~k~f~rai~~Lskigd---------el~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~ 79 (345)
+.+.|.++|...+.... -++|++.+++|.|.|.|..|.+...+..... ..++..+.++.|.+..
T Consensus 130 ~~~~l~~~l~~v~~~~~~~~~~~~l~gI~~~~~~~~l~l~atD~~~~~~~~~~~~~~-------~~~~~~~~i~~~~l~~ 202 (365)
T cd00140 130 PASELKELIKKTAFAVSTDETRPILNGVLLEIEDNKLRAVATDGHRLALREIELESG-------AEEDFNVIVPRKTLNE 202 (365)
T ss_pred CHHHHHHHHhhEEEEecCccCcccceEEEEEEECCEEEEEEEcCceEEEEEeecCCC-------CccCceEEEechHHHH
Confidence 44567788887766432 4999999999999999999988877766542 1224677899999998
Q ss_pred HhcCCCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCccccc--ccCCCCCceEEEEcchhHHHHHhhhcC
Q 038865 80 VLRTPTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQHL--SLDRRRFPSNFVVRPRDLNRLLSNFQS 157 (345)
Q Consensus 80 vfk~~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~--~~~~~~~~~~l~i~~~~L~~~l~~F~~ 157 (345)
++|....+-+.+.|.+. .+++.|+. . ..+|.+++.+ .+.... .+|. .+.+.+.++.+.|.++++....
T Consensus 203 l~k~l~~~~~~v~i~~~---~~~l~i~~--~---~~~~~~~li~-~~yP~~~~~ip~-~~~~~~~i~~~~L~~~l~~~~~ 272 (365)
T cd00140 203 LLKLLEDDDEEVEISIS---ENQILFKL--G---NTTFTSRLIE-GEFPDYERVIPK-EFEKSLTVDREELLEALKRVSL 272 (365)
T ss_pred HHHhccCCCCcEEEEEe---CCEEEEEE--C---CEEEEEEEEe-eECCCchhcCCC-CCcEEEEEEHHHHHHHHHHHhh
Confidence 88874323567788773 34666654 3 2457777764 332221 2343 4779999999999999988764
Q ss_pred Ccc----eEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHHHH
Q 038865 158 SLQ----EITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELK 233 (345)
Q Consensus 158 ~~e----eItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefk 233 (345)
..+ -|.|.+++ +.+.+.+..+... ..+..+.. +| .+++..++|+.|||+
T Consensus 273 ~~~~~~~~v~l~~~~--------------~~l~~~a~~~~~~------~~~~~~~~-----~~--~g~~~~i~~~~~yL~ 325 (365)
T cd00140 273 LSNEKNRGVKLEISE--------------GQLKLSANNPEIG------EAEEELEV-----EY--EGEELEIGFNPKYLL 325 (365)
T ss_pred hhccCCceEEEEEeC--------------CEEEEEEcCCCCc------eEEEEEEE-----Ee--cCCcEEEEECHHHHH
Confidence 432 57777654 3677766543211 01222221 12 366789999999998
Q ss_pred HHHhhhccCCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEec
Q 038865 234 AFLSFCEGCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATM 282 (345)
Q Consensus 234 ail~fae~~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~ 282 (345)
.++...+ +..|.++|+.+.+|++++ +.- ++ +..++|||+
T Consensus 326 d~lk~~~--~~~v~i~~~~~~~p~~i~--~~~-~~-----~~~~limP~ 364 (365)
T cd00140 326 DALKAID--SEEVRLSFTDSNSPVLIT--PED-DD-----NFLYLIMPV 364 (365)
T ss_pred HHHhcCC--CCEEEEEECCCCCCEEEE--cCC-CC-----cEEEEEEeC
Confidence 8888665 458999999999999997 322 21 568999986
No 17
>PRK05643 DNA polymerase III subunit beta; Validated
Probab=98.50 E-value=6.8e-05 Score=73.76 Aligned_cols=217 Identities=15% Similarity=0.243 Sum_probs=143.0
Q ss_pred HHHHHHHHHHhhc---------CceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHh
Q 038865 11 KTFARCLACLSRI---------GNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVL 81 (345)
Q Consensus 11 k~f~rai~~Lski---------gdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vf 81 (345)
..|.++|...+.. =.-++|++.+++|.|.|.|.-|.+...+......++ ...+-|..|.+..+.
T Consensus 134 ~~l~~~i~~v~~a~~~~~~~piL~gi~~~~~~~~l~l~aTD~~rl~~~~~~~~~~~~~-------~~~~~vp~k~l~ei~ 206 (367)
T PRK05643 134 KTLKRLIEKTQFAMSTQETRYYLNGVLLEIEGNELRAVATDGHRLAVRKLELEEGSLG-------DFSVIIPRKTLLELQ 206 (367)
T ss_pred HHHHHHHhheeEEeecCCccccccEEEEEEeCCEEEEEEeccceeEEEEecccCCccc-------CceEEEchHHHHHHH
Confidence 3456666655433 235899999999999999999999998876533221 355778899998888
Q ss_pred cCCCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCccccc--ccCCCCCceEEEEcchhHHHHHhhhcCC-
Q 038865 82 RTPTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQHL--SLDRRRFPSNFVVRPRDLNRLLSNFQSS- 158 (345)
Q Consensus 82 k~~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~--~~~~~~~~~~l~i~~~~L~~~l~~F~~~- 158 (345)
|... +.+.+.|.+ +++++.|+. .+ .+|.+++.+ .+.... .+|+ .+...+.++.+.|.++++.....
T Consensus 207 k~l~-~~~~v~i~~---~~~~~~~~~--~~---~~~~~~li~-g~yP~~~~~ip~-~~~~~~~i~~~~L~~~i~rv~~~~ 275 (367)
T PRK05643 207 KLLD-DEEPVEIFI---SDNQILFEF--GN---TIFTSKLID-GKFPDYRRVIPK-EFDKKLTVDRKELLQALERASILS 275 (367)
T ss_pred HhcC-CCCcEEEEE---eCCEEEEEE--CC---EEEEEEEee-ecCCChhhhCCC-CCCEEEEEEHHHHHHHHHHHHHHh
Confidence 8742 444677776 344555553 32 345555553 222111 1343 67789999999999999875432
Q ss_pred ---cceEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHHHHHH
Q 038865 159 ---LQEITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELKAF 235 (345)
Q Consensus 159 ---~eeItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefkai 235 (345)
..-|.|.+++ +.+.+.+...... . ...++.++ | .+++.++.|+.|||..+
T Consensus 276 ~~~~~~i~l~~~~--------------~~l~~~a~~~~~g---~-a~~~i~~~-------~--~g~~~~i~~n~~yL~d~ 328 (367)
T PRK05643 276 NEKSRGVKLSLSE--------------GQLKISANNPEQG---E-AEEELEVE-------Y--SGEELEIGFNVKYLLDV 328 (367)
T ss_pred cCCCceEEEEEeC--------------CEEEEEEECCCCC---c-EEEEEEEE-------e--cCCcEEEEEcHHHHHHH
Confidence 2346666643 3566655432211 0 11222221 2 36789999999999999
Q ss_pred HhhhccCCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEec
Q 038865 236 LSFCEGCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATM 282 (345)
Q Consensus 236 l~fae~~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~ 282 (345)
+...+ +..|.++|..+.+|+++.+ -++ . ...++|+|+
T Consensus 329 l~~~~--~~~v~i~~~~~~~p~~i~~---~~~---~--~~~~limP~ 365 (367)
T PRK05643 329 LKALD--SEEVRLSFNDANSPFLIRP---PDD---D--SFLYVIMPM 365 (367)
T ss_pred HhcCC--CCEEEEEECCCCCCEEEEc---CCC---C--ceEEEEEee
Confidence 99887 5689999999999999973 122 2 458899986
No 18
>KOG3999 consensus Checkpoint 9-1-1 complex, HUS1 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.45 E-value=7e-05 Score=69.76 Aligned_cols=247 Identities=13% Similarity=0.208 Sum_probs=158.4
Q ss_pred CeeEEeccc---HHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcC--CccEEEEEEeC-ccCCceeeecC-----CEEE
Q 038865 1 MEFAVSGNA---LKTFARCLACLSRIGNELVIQASSHQLAFHTLNS--SRSAYQSITFM-PNFFDVYTVSG-----AQVQ 69 (345)
Q Consensus 1 M~~~l~~~~---~k~f~rai~~Lskigdel~ie~~~~gL~L~avNs--SrSA~~~~~f~-~~FF~~Y~~~~-----~~~~ 69 (345)
|+|.---.+ ++.|.|++.+|.|+|..-++...++.|.+-.-|. .++..+.-.+. ..+|++|+..+ +.+.
T Consensus 1 MKFka~l~d~~~l~~f~ril~al~Kl~K~C~l~l~~e~lnFI~c~~~~~~~~~~ws~~~~e~iF~dy~m~s~~p~~e~I~ 80 (284)
T KOG3999|consen 1 MKFKALLQDNAVLLLFTRILPALDKLGKNCHLRLTKEHLNFIHCDLLDGGSVQVWSQLEKEVIFDDYRMESQNPNNEEIN 80 (284)
T ss_pred CchhhhhccchHHHHHHHHHHHHHHhhhceEEEecccceEEEEecccCCCceEEEEeeehhhcchhheeeccCCCcceEE
Confidence 666644444 9999999999999999999999999999988443 45555555554 49999999853 4688
Q ss_pred EEEEchhhHHHhcCCCCccceEEEEecC--CCCCeEEEEEE---eCCCeEEEEEeeecc-----cCcccccccCCCCCce
Q 038865 70 CSVLLKAVCAVLRTPTASIDNLTVQLPN--SDAPKVQWTLK---CYNGMKKAYWITCNV-----EPDIQHLSLDRRRFPS 139 (345)
Q Consensus 70 ~~i~~Ksll~vfk~~~~~vd~~~i~l~d--~d~~~L~~~l~---c~~gI~Kt~~L~~~~-----~~~~~~~~~~~~~~~~ 139 (345)
+.+..-.+...+|...+-..+|+|+|.. .++..+...+. .+.-.+-+|.+|.-- -.+.+.+.++...++
T Consensus 81 L~v~~~nl~rAlrs~~~g~~~lklKLskk~~p~~t~~~~~lt~~a~~s~iVtHdIPItii~~s~w~~~~~P~vp~~dl~- 159 (284)
T KOG3999|consen 81 LEVDSANLYRALRSLVGGANRLKLKLSKKQFPCLTVSVEVLTFEAKGSRIVTHDIPITIISRSYWSEYQEPLVPAPDLS- 159 (284)
T ss_pred EEecHHHHHHHHHHhcCcccceEEEehhccCCCceeeeeeeccccccCceeEecCCeEEecHHHhhhhcCcCCCCCCcc-
Confidence 9999999999999843337788888853 23334444432 222245666665321 124445555554444
Q ss_pred EEEEc-chhHHHHHhhhcCCcceEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecc
Q 038865 140 NFVVR-PRDLNRLLSNFQSSLQEITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTH 218 (345)
Q Consensus 140 ~l~i~-~~~L~~~l~~F~~~~eeItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~ 218 (345)
+.++ ++.|+.++++|....+-+.+.++.. |.+.++--++-. .++. +|.+...
T Consensus 160 -I~lP~l~~lk~~vdk~Knis~~l~~tan~~-------------GeLqv~v~~e~~-----------~vtt--~Fq~L~~ 212 (284)
T KOG3999|consen 160 -IQLPDLNQLKSFVDKMKNISDVLNVTANKS-------------GELQVSVSIELI-----------RVTT--EFQDLSN 212 (284)
T ss_pred -eeCCCHHHHHHHHHHhhcccceEEEEEecC-------------ceEEEEEEEeeE-----------EEEE--EhhhccC
Confidence 5555 4999999999999999888887642 233333222211 1110 3333221
Q ss_pred -------------cCCceEEEEEhHHHHHHHhhhccCCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEec
Q 038865 219 -------------SGDPVDVTFGVKELKAFLSFCEGCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATM 282 (345)
Q Consensus 219 -------------~~~~~~itF~LKefkail~fae~~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~ 282 (345)
.++.+++....|++-+++.--......+.++...+ +=+. |.+... .++-.+|++.+.
T Consensus 213 ~~~~s~s~~edr~~e~~a~~~ld~r~~~~~~~s~~~~~~~l~c~i~~~-~~v~----~~~~~~--~dvvL~y~vp~~ 282 (284)
T KOG3999|consen 213 PPLKSSSPVEDRSAEARAEVALDSRDASSFFVSVQVFSTSLQCNITKN-DSVH----YGIAPQ--EDVVLQYIVPAV 282 (284)
T ss_pred CCCCCcccccccChhhhhhheehhhhHHHHHHHhhcCcceeEEeeccC-ceEE----EeeccC--ccEEEEEEeccc
Confidence 23345677778888776666666677888888744 3232 556431 255677777654
No 19
>KOG2810 consensus Checkpoint 9-1-1 complex, RAD9 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.37 E-value=2.2e-07 Score=90.85 Aligned_cols=124 Identities=15% Similarity=0.169 Sum_probs=92.5
Q ss_pred EEcchhHHHHHhhhcCCcceEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCC
Q 038865 142 VVRPRDLNRLLSNFQSSLQEITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGD 221 (345)
Q Consensus 142 ~i~~~~L~~~l~~F~~~~eeItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~ 221 (345)
-.+.|+|++++-.+....+|++|++++. .+.++.-.+...+-...+.+++-++.. +|.-.. .+.
T Consensus 7 ~~nlr~lArai~sLSri~~ev~iev~~~--------------~l~l~t~N~srSa~~~~~f~~~FF~~y-df~~~q-~~~ 70 (394)
T KOG2810|consen 7 GSNLRVLARAIVSLSRIGEEVTIEVSPL--------------GLCLKTVNESRSAFSCATFKEMFFGVY-DFQPPQ-ADF 70 (394)
T ss_pred cchhHHHHHHhhhHhhhcceeEEEEcCC--------------eeEEEecccccchhhhhhhhHhhccch-hcCCcc-ccc
Confidence 3567999999999999999999999874 566776665544333334444443332 332221 233
Q ss_pred c--eEEEEEhHHHHHHHhhhccCCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEeccccccc
Q 038865 222 P--VDVTFGVKELKAFLSFCEGCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATMLVSQLQ 288 (345)
Q Consensus 222 ~--~~itF~LKefkail~fae~~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~~~~~~ 288 (345)
. +.++||||+||+++-|++...+.+.++|+.||+||+++. .+. .-...+|+||..|.|..
T Consensus 71 ~~~v~mK~clsvFRgl~~~~~~~~~~~~~~~d~~s~rl~~~l----~ck---l~~~kt~~atl~d~qS~ 132 (394)
T KOG2810|consen 71 GCKVSMKFCLSVFRGLLFFAESTHLCESILFDAPSRRLIFTL----KCK---LGVGKTILATLSDTQSI 132 (394)
T ss_pred hhhhhHHHHHHHHhhhcccccccceeeeecCCCCCcceEEEe----hhh---hcccceEEEEeecchhh
Confidence 4 778999999999999999999999999999999999774 332 22679999999998764
No 20
>smart00480 POL3Bc DNA polymerase III beta subunit.
Probab=98.28 E-value=0.00042 Score=67.72 Aligned_cols=204 Identities=14% Similarity=0.219 Sum_probs=133.2
Q ss_pred HHHHHHHHHHhh---------cCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHh
Q 038865 11 KTFARCLACLSR---------IGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVL 81 (345)
Q Consensus 11 k~f~rai~~Lsk---------igdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vf 81 (345)
..|.++|...+. +=.-++|++.+++|.|.|.|.-|.+...+.+... .....+-|..|.+..+.
T Consensus 116 ~~L~~~i~~v~~a~s~~~~~piL~Gi~~~~~~~~l~lvATDg~rla~~~~~~~~~--------~~~~~~ivP~k~l~el~ 187 (345)
T smart00480 116 KLLKEGIEKTAFAVSTDETRPVLNGVNLEISNGELRLVATDGHRLAVREIKLESE--------EDDFSVIIPRKSLLELN 187 (345)
T ss_pred HHHHHHHhhEEEEEecCCCcceeeEEEEEEECCEEEEEEEcCceEEEEEeccCCC--------CCcceEEEehHHHHHHH
Confidence 345555554443 2345899999999999999999999887754321 11357889999999999
Q ss_pred cCCCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCccccc--ccCCCCCceEEEEcchhHHHHHhhhcCCc
Q 038865 82 RTPTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQHL--SLDRRRFPSNFVVRPRDLNRLLSNFQSSL 159 (345)
Q Consensus 82 k~~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~--~~~~~~~~~~l~i~~~~L~~~l~~F~~~~ 159 (345)
|....+.+.+.|.+. ++++.|+ +.+ .+|.+++.+ .+-... .+| ..+...+.++.+.|.+.++......
T Consensus 188 k~l~~~~~~v~i~~~---~~~~~~~--~~~---~~~~~~li~-g~fP~~~~vip-~~~~~~~~i~~~~L~~ai~rv~~~~ 257 (345)
T smart00480 188 KLLTDNEELVEIFIS---SNQILFE--TGN---VIFTSRLID-GEFPDYKRVIP-KEFETKLTVNRKELKEALKRVALLA 257 (345)
T ss_pred HhccCCCCcEEEEEe---CCEEEEE--ECC---EEEEEEEee-ecCCCchhhCC-CCCCEEEEEEHHHHHHHHHHHhhhh
Confidence 985333456788773 3455554 443 345555553 221111 233 3567899999999999998775433
Q ss_pred c----eEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHHHHHH
Q 038865 160 Q----EITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELKAF 235 (345)
Q Consensus 160 e----eItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefkai 235 (345)
+ -|.|...+ +.+.+.+...... ...-++.+ +| .|++.+|.|+.|||..+
T Consensus 258 ~~~~~~v~l~~~~--------------~~l~~~a~d~~~g----~~~e~i~~-------~~--~g~~~~i~fN~~yL~d~ 310 (345)
T smart00480 258 NEKNRSVKLTLEE--------------GQLKLTANSPEVG----EAEEEVDV-------DY--EGEDLEIAFNPKYLLDA 310 (345)
T ss_pred cCCCceEEEEEeC--------------CEEEEEEcCCccc----eEEEEEEE-------Ee--cCCcEEEEECHHHHHHH
Confidence 3 25555543 3566655432211 01112222 13 47899999999999877
Q ss_pred HhhhccCCCeEEEEeeCCCCcEEEee
Q 038865 236 LSFCEGCEVDIHLFFDKAGEPILMAP 261 (345)
Q Consensus 236 l~fae~~~~~i~i~f~~~G~Pl~~~~ 261 (345)
+.-.++ ..|.++|..+.+|+++.+
T Consensus 311 l~~~~~--~~v~l~~~~~~~p~~i~~ 334 (345)
T smart00480 311 LKALKS--EEIELKFTDSSSPFLISP 334 (345)
T ss_pred HhcCCC--CEEEEEECCCCCCEEEEc
Confidence 777653 589999999999999874
No 21
>PRK14945 DNA polymerase III subunit beta; Provisional
Probab=98.20 E-value=0.00071 Score=66.69 Aligned_cols=214 Identities=12% Similarity=0.125 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHhhc---------CceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHH
Q 038865 10 LKTFARCLACLSRI---------GNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAV 80 (345)
Q Consensus 10 ~k~f~rai~~Lski---------gdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~v 80 (345)
...|.++|...... =.-++|++.+++|.|.|.|.-|.+...+.... .. ...+-|..|.+..+
T Consensus 129 ~~~L~~~i~~v~~avs~~~~~piL~gv~l~~~~~~l~lvATDg~rla~~~~~~~~--------~~-~~~~iip~k~l~el 199 (362)
T PRK14945 129 AGELAKALTHVRYAASNEEFQAIFRGVKLEHSPQGLRAVASDGYRLAIYDLPASQ--------GQ-GRKLVIPARSADEL 199 (362)
T ss_pred HHHHHHHHhhEEEEEecccchhheeeEEEEEeCCEEEEEEEccceEEEEEeccCC--------CC-CceEEEEHHHHHHH
Confidence 45566666665543 34589999999999999999999988875431 22 36788999999999
Q ss_pred hcCCCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCccccc--ccCCCCCceEEEEcchhHHHHHhhhcCC
Q 038865 81 LRTPTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQHL--SLDRRRFPSNFVVRPRDLNRLLSNFQSS 158 (345)
Q Consensus 81 fk~~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~--~~~~~~~~~~l~i~~~~L~~~l~~F~~~ 158 (345)
.|.... .+.+.|.+ +++++.|+ +.+ .+|.+++.+ .+-... .+| ..+...+.++.+.|.++|+.....
T Consensus 200 ~k~l~~-~~~v~i~~---~~~~i~~~--~~~---~~~~~~lid-g~fP~~~~vip-~~~~~~v~i~~~~L~~~l~r~~~~ 268 (362)
T PRK14945 200 VRVLKD-GDEASLAL---GEGVLTLT--TGG---VRMNLKLME-GEFPDYERVIP-QDFKLQVTLPAEALREAVNRVAVL 268 (362)
T ss_pred HHhcCC-CCcEEEEE---cCCEEEEE--ECC---EEEEEEeec-ccCCChhhhCC-CCCCEEEEEEHHHHHHHHHHHhhh
Confidence 987532 23677766 34455554 543 246666654 222111 233 346789999999999999876532
Q ss_pred c-----ceEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccC--CceEEEEEhHH
Q 038865 159 L-----QEITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSG--DPVDVTFGVKE 231 (345)
Q Consensus 159 ~-----eeItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~--~~~~itF~LKe 231 (345)
. .-|.|.+.+ +.+.+.+- + +. +...-++.+ +| .| ++.+|.|+.+|
T Consensus 269 ~~~~~~~~v~l~~~~--------------~~l~~~a~-~-~~---g~a~~~i~~-------~~--~G~~~~~~i~fN~~y 320 (362)
T PRK14945 269 SDRNANNRVELLVAE--------------GRLRLTAE-G-DY---GRGQEELAV-------TQ--EGSEPAMALAYNARY 320 (362)
T ss_pred hccCCCccEEEEEEC--------------CEEEEEec-C-CC---ceEEEEEEE-------Ee--ecCCCCEEEEECHHH
Confidence 2 125666543 35666442 2 11 111122322 13 34 38999999999
Q ss_pred HHHHHhhhccCCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEec
Q 038865 232 LKAFLSFCEGCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATM 282 (345)
Q Consensus 232 fkail~fae~~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~ 282 (345)
|..+|.-.+ ..|.+.|..+.+|+++++ .++. ...++++|+
T Consensus 321 l~d~L~~~~---~~v~l~~~~~~~p~~i~~---~~~~-----~~~~limP~ 360 (362)
T PRK14945 321 LLDALAPIE---GDARLGFSGPTSPSVLRS---VDDP-----GYLAVVVPL 360 (362)
T ss_pred HHHHHHhCC---CcEEEEECCCCCCEEEEe---CCCC-----cEEEEEEee
Confidence 987777555 369999999999999974 3332 336788876
No 22
>PRK14941 DNA polymerase III subunit beta; Provisional
Probab=97.98 E-value=0.0048 Score=61.21 Aligned_cols=225 Identities=11% Similarity=0.173 Sum_probs=139.4
Q ss_pred HHHHHHHHHHhhc---------CceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHh
Q 038865 11 KTFARCLACLSRI---------GNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVL 81 (345)
Q Consensus 11 k~f~rai~~Lski---------gdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vf 81 (345)
..|+++|.-..+. =.-++|++.+++|.|-|.|.-|.|...+..... .. ....+-|..|.+. .+
T Consensus 136 ~~L~~~i~~v~~a~s~~~~rpiL~Gv~l~~~~~~l~lvATDg~Rla~~~~~~~~~------~~-~~~~~iiP~k~l~-el 207 (374)
T PRK14941 136 SELLDLIQKTIFACSVDGMRPAMMGVLFELEGNTITAVSTDGHRLVRCRKNSSVG------VE-EKQKIVVPARVLS-IL 207 (374)
T ss_pred HHHHHHHhheeEEEecccchhhhceEEEEEeCCEEEEEEecCeeEEEEEecccCC------cc-ccceEEechHHHH-HH
Confidence 3455666655442 345899999999999999999999888765321 11 1356888999984 55
Q ss_pred cCCCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHHHhhhcC--Cc
Q 038865 82 RTPTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRLLSNFQS--SL 159 (345)
Q Consensus 82 k~~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~F~~--~~ 159 (345)
++.... +.+.|.+. .+...+.|+ +.+.... -+|--.+-++... .+| ..++..+.++.+.|.+.|+.... +.
T Consensus 208 ~kll~~-~~v~i~~~-~~~~~i~~~--~~~~~~~-s~Li~g~fPdy~~-viP-~~~~~~i~i~~~~L~~al~rv~~~~~~ 280 (374)
T PRK14941 208 QKLAQH-ETVTMSID-SERRFVRFI--CGNVVLD-AALIVEPYPNYEA-VIP-VENDKKLVINRSNIYDSVKRVGRFSSI 280 (374)
T ss_pred HHhCCC-CceEEEEE-cCCCEEEEE--ECCEEEE-EEEEeecCCCccc-cCC-CCCCEEEEEeHHHHHHHHHHHHHHccC
Confidence 553322 25666663 234455555 4443333 3331111223332 344 35789999999999999976542 34
Q ss_pred ceEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHHHHHHHhhh
Q 038865 160 QEITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELKAFLSFC 239 (345)
Q Consensus 160 eeItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefkail~fa 239 (345)
+.+.+...+ +.+.+.+...+.. ....-++.+ +| .|++.+|.|+-|||..+|.-.
T Consensus 281 ~~v~~~~~~--------------~~l~l~~~~~~~g---~~~~e~i~~-------~~--~G~~~~I~fN~~yl~d~L~~~ 334 (374)
T PRK14941 281 GDIKISVEG--------------SVLKVMAENTNEG---ESAQEELPC-------SY--TGEDITIGFNSKFIEAALAHL 334 (374)
T ss_pred CceEEEEEC--------------CEEEEEEECcccc---cceEEEEEe-------Ee--CCCcEEEEEcHHHHHHHHhcC
Confidence 567777653 3666766532211 011122222 13 488999999999997777666
Q ss_pred ccCCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEecc
Q 038865 240 EGCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATML 283 (345)
Q Consensus 240 e~~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~ 283 (345)
+ +..|.++|..+.+|+++++ ..+.... ...++++|+.
T Consensus 335 ~--~~~v~l~~~~~~~p~~i~~---~~~~~~~--~~~~limPvr 371 (374)
T PRK14941 335 D--EEEIIIELSSPTTAVIFKP---KKEEEND--DLIILVMPVR 371 (374)
T ss_pred C--CCEEEEEECCCCCCEEEec---CCCCCCC--ceEEEEeeEE
Confidence 5 3589999999999999974 2111112 3478888874
No 23
>PRK14940 DNA polymerase III subunit beta; Provisional
Probab=97.93 E-value=0.0043 Score=61.39 Aligned_cols=219 Identities=13% Similarity=0.136 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHhhc---------CceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHH
Q 038865 10 LKTFARCLACLSRI---------GNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAV 80 (345)
Q Consensus 10 ~k~f~rai~~Lski---------gdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~v 80 (345)
...|+++|.-.+.. =.-++|++.+++|.+.|.|.-|=|.....+..+ .. +...+-|..|.+.-+
T Consensus 132 ~~~L~~~i~~v~~a~s~~~~rpiL~Gv~~~~~~~~l~~vATDg~RLa~~~~~~~~~------~~-~~~~viiP~k~l~~l 204 (367)
T PRK14940 132 TKDLREMINQTIFAVSDDETRYFMNGVYVEFQYGNIICVATDGRRLAYIKKKGESS------PQ-EFSGVIVPPKILGII 204 (367)
T ss_pred HHHHHHHHhhEeEEEcCCCCCceeEEEEEEEeCCEEEEEEEcCceEEEEEeccCCC------cc-ccceEEEcHHHHHHH
Confidence 34566666665543 334899999999999999999988887765432 11 113577888888744
Q ss_pred hcCCCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeeccc--CcccccccCCCCCceEEEEcchhHHHHHhhhcCC
Q 038865 81 LRTPTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVE--PDIQHLSLDRRRFPSNFVVRPRDLNRLLSNFQSS 158 (345)
Q Consensus 81 fk~~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~--~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~F~~~ 158 (345)
.|- ...-+.+.|.+ +.+++.|+ +.+ .+|..++.+. ++..+ .+++ .++..++++.+.|.+.++.....
T Consensus 205 ~kl-l~~~~~v~i~~---~~~~i~f~--~~~---~~~~~rlidg~fPdy~~-vip~-~~~~~~~i~~~~L~~al~R~~~~ 273 (367)
T PRK14940 205 NKK-LSPEGNVTLCI---TSQNIFFF--FGG---YKFSSVLIEGQFPNYKR-VIPD-HQERSFCVGRVELMEALKRVSLL 273 (367)
T ss_pred HHh-cCCCCcEEEEE---eCCEEEEE--ECC---EEEEEEEccccccchHh-hCCC-CCCEEEEEEHHHHHHHHHHHHHH
Confidence 443 22345677776 33455554 332 2444444431 11222 2343 46789999999999999886543
Q ss_pred c----ceEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHHHHH
Q 038865 159 L----QEITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELKA 234 (345)
Q Consensus 159 ~----eeItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefka 234 (345)
. .-|.|.+.+ +.+.+.+....... ...++.+ +| .|++.+|.|+-|||..
T Consensus 274 ~~~~~~~v~l~~~~--------------~~l~l~~~~~e~G~----~~e~i~~-------~~--~Ge~~~I~fN~~yl~d 326 (367)
T PRK14940 274 VEQKSRRIFLTIQQ--------------GLLTLSSQENEIGD----AQEEIAC-------AY--TGEEEVIALNYLYLEE 326 (367)
T ss_pred hccCCceEEEEEeC--------------CEEEEEEcCCCCcc----EEEEEEE-------Ee--cCCcEEEEECHHHHHH
Confidence 2 235565543 35666554322110 1122221 23 4889999999999977
Q ss_pred HHhhhccCCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEecc
Q 038865 235 FLSFCEGCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATML 283 (345)
Q Consensus 235 il~fae~~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~ 283 (345)
+|.-.++ -.|.+.|..+.+|+++.+ .++ . ...++++|+.
T Consensus 327 ~L~~i~~--~~v~l~~~~~~~p~~i~~---~~~---~--~~~~liMP~r 365 (367)
T PRK14940 327 PLKVFTS--KEVQVEFTEAAKAITLRP---VPE---T--DCFHIIMPMQ 365 (367)
T ss_pred HHhCCCC--CEEEEEECCCCCCEEEEe---CCC---C--cEEEEEEeee
Confidence 7776653 589999999999999974 222 2 3468888863
No 24
>PRK14944 DNA polymerase III subunit beta; Provisional
Probab=97.91 E-value=0.0044 Score=61.66 Aligned_cols=207 Identities=18% Similarity=0.230 Sum_probs=135.4
Q ss_pred CceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhcCCCC-ccceEEEEecCCCCCe
Q 038865 24 GNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLRTPTA-SIDNLTVQLPNSDAPK 102 (345)
Q Consensus 24 gdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk~~~~-~vd~~~i~l~d~d~~~ 102 (345)
=.-++|+..++.|.+-|.|.=|=|+..+.+..+. ..+.+-|..|++.-+.|-... .-+.+.|.+ +.+.
T Consensus 158 L~Gv~~~~~~~~l~~vATDghRLa~~~~~~~~~~--------~~~~~iIP~k~l~el~kll~~~~~~~v~i~~---~~~~ 226 (375)
T PRK14944 158 LTGLNLIYQKNLLKALATDSFRMSQKKIKLDFNY--------HNFNIVIPNKSLEELSKILEYYQSKNLKIYS---DSKK 226 (375)
T ss_pred eeEEEEEEECCEEEEEEEccceeEEEEeccCCCC--------CceEEEEECchHHHHHHHhccCCCCcEEEEE---cCCE
Confidence 3458899999999999999999999877665331 125677888888887776422 345677877 4566
Q ss_pred EEEEEEeCCCeEEEEEeeecc--cCcccccccCCCCCceEEEEcchhHHHHHhhhcCCcc-------eEEEEEcCCCCCC
Q 038865 103 VQWTLKCYNGMKKAYWITCNV--EPDIQHLSLDRRRFPSNFVVRPRDLNRLLSNFQSSLQ-------EITVIATEPTSLP 173 (345)
Q Consensus 103 L~~~l~c~~gI~Kt~~L~~~~--~~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~F~~~~e-------eItl~~t~~~~~~ 173 (345)
+.|++. + + ++..++.+ -++..+ .+|+ .+...++++-+.|.+.|+....... -|.|...+
T Consensus 227 i~f~~~--~-~--~~~srLieG~fPdy~~-viP~-~~~~~~~i~r~~l~~al~Rvslls~~~~~~~~~v~l~~~~----- 294 (375)
T PRK14944 227 IFLKID--N-L--WFQTSLLEGNYPQIQE-IKLT-NFPFSIHLNKDDLMKALERVSLLFSKEQNNTNVVKFILTK----- 294 (375)
T ss_pred EEEEEC--C-E--EEEEEeecccCCChhh-hCCC-CCCeEEEEeHHHHHHHHHHHHHHhccccCCCceEEEEEcC-----
Confidence 666652 2 2 22222222 112233 4665 6889999999999999988764432 26776642
Q ss_pred CCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHHHHHHHhhhccCCCeEEEEeeCC
Q 038865 174 SDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELKAFLSFCEGCEVDIHLFFDKA 253 (345)
Q Consensus 174 s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefkail~fae~~~~~i~i~f~~~ 253 (345)
++.+.+++....... .+-.+.+ + +| .|++.+|.|+-|||..+|.-.++ -.|.+.|..+
T Consensus 295 --------~~~l~iss~~~e~G~------a~e~i~~---~-~~--~Ge~~~I~fN~~YL~d~L~~i~~--~~v~i~~~~~ 352 (375)
T PRK14944 295 --------EKSIEISSSNESLGT------ALEKIIP---L-KV--SANSFEIAFNAKYLEDILKVLSV--KEIVFYFDSP 352 (375)
T ss_pred --------CCEEEEEEcCcccCe------EEEEEec---c-cc--cCCcEEEEEcHHHHHHHHhcCCC--CEEEEEECCC
Confidence 135667665432210 1111100 1 23 48899999999999777776653 5799999999
Q ss_pred CCcEEEeeeccCCCCCCCceEEEEEEEecc
Q 038865 254 GEPILMAPKFGLDDGSGSNFDATLVLATML 283 (345)
Q Consensus 254 G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~ 283 (345)
.+|+++++ .++ . ...++++|+.
T Consensus 353 ~~p~~i~~---~~~---~--~~~~lImPv~ 374 (375)
T PRK14944 353 LKPFIVTT---LEK---D--SSIHLILPIP 374 (375)
T ss_pred CCCEEEEc---CCC---C--ceEEEEEeCC
Confidence 99999974 222 2 3468888874
No 25
>PRK14943 DNA polymerase III subunit beta; Provisional
Probab=97.91 E-value=0.01 Score=58.71 Aligned_cols=220 Identities=12% Similarity=0.113 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHhhcC--c-------eEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHH
Q 038865 10 LKTFARCLACLSRIG--N-------ELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAV 80 (345)
Q Consensus 10 ~k~f~rai~~Lskig--d-------el~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~v 80 (345)
.+.|.++|.-.+... + -++|+..++.|.|.|-|.-|-|........ .... ...+-|..|.+.-+
T Consensus 131 ~~~l~~~i~~v~~a~s~~~~~~~L~gv~l~~~~~~l~l~aTDg~rla~~~~~~~~------~~~~-~~~~ivp~k~l~~l 203 (374)
T PRK14943 131 QSELRDMLKSVEYAQSTDETRYILNGVYFNFRDGKLTLVATDGRRLALAETELEF------PEDQ-AGDAILPAKTVGEL 203 (374)
T ss_pred HHHHHHHHhhEeEEeccCcCCcceEEEEEEEeCCEEEEEEecchhEEEEEeccCC------CCCc-CceEEEehhHHHHH
Confidence 355667776665432 1 499999999999999999998877765531 1111 23466888888887
Q ss_pred hcCCCCccceEEEEecCCCCCeEEEEEEeC-------CCeEEEEEeeecc--cCcccccccCCCCCceEEEEcchhHHHH
Q 038865 81 LRTPTASIDNLTVQLPNSDAPKVQWTLKCY-------NGMKKAYWITCNV--EPDIQHLSLDRRRFPSNFVVRPRDLNRL 151 (345)
Q Consensus 81 fk~~~~~vd~~~i~l~d~d~~~L~~~l~c~-------~gI~Kt~~L~~~~--~~~~~~~~~~~~~~~~~l~i~~~~L~~~ 151 (345)
.|... ..+.+.|.+ ++..+.+.+.|. ++. ++..++.+ -++... .+| ..+...++++.+.|.+.
T Consensus 204 ~~~l~-~~~~V~i~~---~~~~~~f~~~~~~~~~~~~~~~--~~~~~li~g~fP~y~~-vip-~~~~~~~~i~~~~l~~a 275 (374)
T PRK14943 204 RRLLD-KGGKLKIRF---NDRQAAFEISIGEDSSGLANDT--YLISKLVEGNYPNYRQ-VIP-KETKERIKLERELLLEC 275 (374)
T ss_pred HHhCC-CCCcEEEEE---eCCEEEEEEeccccccccCCCE--EEEEEEeeecCCChHH-hCC-CCCCeEEEEEHHHHHHH
Confidence 77643 345677777 345566766543 322 22222222 112222 234 35778999999999999
Q ss_pred HhhhcCC----cceEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEE
Q 038865 152 LSNFQSS----LQEITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTF 227 (345)
Q Consensus 152 l~~F~~~----~eeItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF 227 (345)
++..... ..-|.|...+ +.+.+.+....... ..-++.+ +| .|++.+|.|
T Consensus 276 l~r~~~~~~~~~~~v~l~~~~--------------~~l~i~~~~~e~G~----~~e~i~~-------~~--~G~~~~i~f 328 (374)
T PRK14943 276 VHRAALVSSDKSNSVKLKFSE--------------NLLEIASSSEGVGE----AHESMAI-------TY--SGPELQVAF 328 (374)
T ss_pred HHHHHhhcccCCceEEEEEEC--------------CEEEEEEcCCCCce----EEEEEEE-------Ee--cCCcEEEEE
Confidence 9865422 2235555543 35666554322110 1111211 12 478999999
Q ss_pred EhHHHHHHHhhhccCCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEecc
Q 038865 228 GVKELKAFLSFCEGCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATML 283 (345)
Q Consensus 228 ~LKefkail~fae~~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~ 283 (345)
+-+||..++.-.+ +-.|.+.|..+.+|+++.+ ++ +..++++|+.
T Consensus 329 N~~yl~d~l~~~~--~~~v~l~~~~~~~p~~i~~----~~------~~~~limP~r 372 (374)
T PRK14943 329 NPDFFMAPLKALT--KDEVFFELKDEMSPGVFKT----LD------EFLCVIMPMR 372 (374)
T ss_pred CHHHHHHHHhcCC--CCEEEEEECCCCCCEEEec----CC------CeEEEEEeee
Confidence 9999977766654 3579999999999999862 11 2367888864
No 26
>PRK07761 DNA polymerase III subunit beta; Validated
Probab=97.83 E-value=0.0076 Score=59.71 Aligned_cols=228 Identities=12% Similarity=0.128 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHhhc---------CceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHH
Q 038865 10 LKTFARCLACLSRI---------GNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAV 80 (345)
Q Consensus 10 ~k~f~rai~~Lski---------gdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~v 80 (345)
-..|.++|.-.... =.-++|++.++.|.|.|.|.-|-|...+.+.+..++ . ...+-|..|.|..+
T Consensus 129 ~~~L~~~i~~v~~a~s~~~~~piL~gV~l~~~~~~L~l~ATDg~rLa~~~~~~~~~~~~-----~-~~~~iIP~k~l~ei 202 (376)
T PRK07761 129 ADAFAEAVSQVAVAAGRDDTLPMLTGVRVEIEGDTVTLAATDRYRLAVRELTWKPASPD-----I-SAAALVPARTLSDT 202 (376)
T ss_pred HHHHHHHHhhEeEEEEcccchhhhceEEEEEeCCEEEEEEECCceEEEEEeccCCCCCC-----c-ceeEEEEhHHHHHH
Confidence 34566666665543 234899999999999999999999887655443221 1 35678999999999
Q ss_pred hcCCCCccceEEEEec-CC-CCCeEEEEEEeCCCeEEEEEeeecccCccccc--ccCCCCCceEEEEcchhHHHHHhhhc
Q 038865 81 LRTPTASIDNLTVQLP-NS-DAPKVQWTLKCYNGMKKAYWITCNVEPDIQHL--SLDRRRFPSNFVVRPRDLNRLLSNFQ 156 (345)
Q Consensus 81 fk~~~~~vd~~~i~l~-d~-d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~--~~~~~~~~~~l~i~~~~L~~~l~~F~ 156 (345)
.|... ..+.+.|.+. +. +... +.+.+.+ .+|.+++.+ .+.... .+| ..+...+.++.+.|.++++...
T Consensus 203 ~k~l~-~~~~v~i~~~~~~~~~~~--i~~~~~~---~~~~~~li~-g~fP~~~~vip-~~~~~~~~i~~~~L~~~l~r~~ 274 (376)
T PRK07761 203 AKSLG-SGGNVSIALSTGVGGEGL--IGFEGGG---RRTTTRLLD-GEFPKVRRLFP-DEHPAVAVVETAPLIEAIKRVA 274 (376)
T ss_pred HHhcC-CCCcEEEEEecCcCCCCE--EEEEECC---EEEEEEEec-ccCCChHhhCC-CCCCEEEEEEHHHHHHHHHHHH
Confidence 99853 3446777773 01 2333 4444543 345555543 221111 223 3456789999999999998665
Q ss_pred CC---cceEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHHHH
Q 038865 157 SS---LQEITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELK 233 (345)
Q Consensus 157 ~~---~eeItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefk 233 (345)
.. ..-|.|.+.+ +.+.+.+....... .+-.|.. +| .|++.+|.|+-|||.
T Consensus 275 ~~~~~~~~v~l~~~~--------------~~l~l~~~~~~~G~------~~e~i~~-----~~--~Ge~~~i~fN~~yl~ 327 (376)
T PRK07761 275 LVAERNAPVRLEFSD--------------GQLTLSAGGGDDAQ------ASEALEA-----DL--TGEDLTIAFNPQYLL 327 (376)
T ss_pred HHhcCCceEEEEEeC--------------CEEEEEEcCCCcce------EEEEEEE-----Ee--cCCcEEEEECHHHHH
Confidence 32 2336666543 36667665432210 1112211 13 478999999999997
Q ss_pred HHHhhhccCCCeEEEEeeCCCCcEEEeeeccCCCCCC-CceEEEEEEEecc
Q 038865 234 AFLSFCEGCEVDIHLFFDKAGEPILMAPKFGLDDGSG-SNFDATLVLATML 283 (345)
Q Consensus 234 ail~fae~~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~-~~~~a~fvLAT~~ 283 (345)
.+|.-.++ ..|.+.|..+.+|+++++ .++... .+=...++++|+.
T Consensus 328 d~L~~~~~--~~v~l~~~~~~~p~~i~~---~~~~~~~~~~~~~~limPvr 373 (376)
T PRK07761 328 DGLSALHT--PRVRFGFTTPSKPALLTG---QPEDDGEPSTDYRYLLMPVR 373 (376)
T ss_pred HHHhcCCC--CeEEEEECCCCCCEEEec---CcccccCCCCceEEEEEeee
Confidence 77777763 589999999999999974 221000 0013478888874
No 27
>PRK06673 DNA polymerase III subunit beta; Validated
Probab=97.82 E-value=0.0071 Score=60.13 Aligned_cols=205 Identities=14% Similarity=0.214 Sum_probs=132.1
Q ss_pred ceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhcCCCCccceEEEEecCCCCCeEE
Q 038865 25 NELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLRTPTASIDNLTVQLPNSDAPKVQ 104 (345)
Q Consensus 25 del~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk~~~~~vd~~~i~l~d~d~~~L~ 104 (345)
.-++|+..++.|.+-|.|.-|=|+....+... . ...+-|..|+|.-+.|-.....+.+.|.+ +++.+.
T Consensus 162 ~Gv~l~~~~~~l~~vaTDg~RLA~~~~~~~~~--------~-~~~~iIP~k~l~el~kll~~~~~~v~i~~---~~~~i~ 229 (376)
T PRK06673 162 TGVHIELDHNKLICAATDSHRLAIRETLISTN--------M-KANCIVPSATINELLKLMNSNLEFVSIYL---SESHII 229 (376)
T ss_pred eeEEEEEeCCEEEEEEecCceEEEEecccCCC--------C-CCcEEEEHHHHHHHHHhccCCCceEEEEE---eCCEEE
Confidence 34789999999999999999999987766421 1 24577888888888776433455677776 345666
Q ss_pred EEEEeCCCeEEEEEeeecc--cCcccccccCCCCCceEEEEcchhHHHHHhhhcCCcc-----eEEEEEcCCCCCCCCcc
Q 038865 105 WTLKCYNGMKKAYWITCNV--EPDIQHLSLDRRRFPSNFVVRPRDLNRLLSNFQSSLQ-----EITVIATEPTSLPSDAA 177 (345)
Q Consensus 105 ~~l~c~~gI~Kt~~L~~~~--~~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~F~~~~e-----eItl~~t~~~~~~s~~~ 177 (345)
|.+ .+ .++..++.+ -++..+ .+|+ .+...++++-+.|.+.|+....... -|.|....
T Consensus 230 f~~--~~---~~~~srLieG~fPdy~~-vip~-~~~~~v~i~r~~l~~al~Rvsi~~~~~~~~~v~l~~~~--------- 293 (376)
T PRK06673 230 FTF--GT---TTLYSRLIEGKYPNIST-LIPN-EFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIVN--------- 293 (376)
T ss_pred EEE--CC---EEEEEEEecccCCChhh-cCCC-CCcEEEEEEHHHHHHHHHHHHHhhccCCCCcEEEEEcC---------
Confidence 654 32 222222332 112233 4665 5789999999999999988764332 25565421
Q ss_pred cccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCC-ceEEEEEhHHHHHHHhhhccCCCeEEEEeeCCCCc
Q 038865 178 SEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGD-PVDVTFGVKELKAFLSFCEGCEVDIHLFFDKAGEP 256 (345)
Q Consensus 178 ~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~-~~~itF~LKefkail~fae~~~~~i~i~f~~~G~P 256 (345)
++.+.+.+...+... ..-++.++ .| .|+ +..|.|+-|||..+|.-.+ +..|.+.|..+..|
T Consensus 294 ----~~~l~i~s~~~e~G~----a~e~i~~~------~~--~Ge~~~~I~fN~~YLld~L~~i~--~e~v~l~~~~~~~p 355 (376)
T PRK06673 294 ----ESTIQISSNASQIGK----ISETQQID------AI--QGEKQLNISFDGRFMLDALRAIK--EETVTLSFSGSMRP 355 (376)
T ss_pred ----CCEEEEEEcCCCCCc----EEEEEEee------ec--CCCccEEEEECHHHHHHHHhcCC--CCEEEEEECCCCCC
Confidence 135666664322211 11122221 12 366 8999999999977777665 35899999999999
Q ss_pred EEEeeeccCCCCCCCceEEEEEEEecc
Q 038865 257 ILMAPKFGLDDGSGSNFDATLVLATML 283 (345)
Q Consensus 257 l~~~~~f~l~d~~~~~~~a~fvLAT~~ 283 (345)
+++++ .++ . ...++++|+.
T Consensus 356 ~li~~---~~~---~--~~~~limP~r 374 (376)
T PRK06673 356 ILIEA---GTQ---S--AAIHLISPVR 374 (376)
T ss_pred EEEEc---CCC---C--ceEEEEEeeE
Confidence 99873 222 2 3468888873
No 28
>TIGR00663 dnan DNA polymerase III, beta subunit. University).
Probab=97.78 E-value=0.016 Score=56.95 Aligned_cols=220 Identities=15% Similarity=0.194 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHhhcC--c-------eEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHH
Q 038865 10 LKTFARCLACLSRIG--N-------ELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAV 80 (345)
Q Consensus 10 ~k~f~rai~~Lskig--d-------el~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~v 80 (345)
...|.++|...+-.. + -++|+..++.|.+.|-|.-|-|...+..... .. ....+-|..|.|..+
T Consensus 131 ~~~l~~~i~~v~~a~~~~~~r~~L~gi~~~~~~~~l~~~atDg~RLa~~~~~~~~~------~~-~~~~~iiP~k~l~el 203 (367)
T TIGR00663 131 SDVLKEAINQTAFAAGEDETRPVLNGVLIEQKGKTLLLVATDGHRLAVCKLKSEVS------DE-EDFSVIIPAKALNEL 203 (367)
T ss_pred HHHHHHHHhhEEEEEecCCCCcccceEEEEEeCCEEEEEEecchheEEEeccccCC------CC-ccceEEEecHHHHHH
Confidence 345666666544332 2 3999999999999999999988766542211 11 236688899999888
Q ss_pred hcCCCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecc--cCcccccccCCCCCceEEEEcchhHHHHHhhhcCC
Q 038865 81 LRTPTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNV--EPDIQHLSLDRRRFPSNFVVRPRDLNRLLSNFQSS 158 (345)
Q Consensus 81 fk~~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~--~~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~F~~~ 158 (345)
.|-...+.+...+.. +.+.+.|+ +.+ -+|..++.+ -++... .+| ..+.+.++++.+.|.+.++.....
T Consensus 204 ~~~l~~~~~~~~~~~---~~~~~~~~--~~~---~~~~~rli~g~yP~y~~-vip-~~~~~~~~i~~~~L~~al~rv~~~ 273 (367)
T TIGR00663 204 LKLLSENGSVVLKSL---NDQLVYIE--LGN---YKFTSKLIEGNYPDYKS-VIP-KEQKNSFTVNREELKEAIKRVSLL 273 (367)
T ss_pred HHHhcCCCCeEEEEE---eCCEEEEE--ECC---EEEEEEEeeccCCCccc-cCC-CCCCEEEEEeHHHHHHHHHHHHHH
Confidence 886432222222232 34556555 332 233333332 112222 344 356799999999999999776422
Q ss_pred ----cceEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHHHHH
Q 038865 159 ----LQEITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELKA 234 (345)
Q Consensus 159 ----~eeItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefka 234 (345)
..-|.+...++ ..+.+.+...... +.+..+.. + | .|++.++.|+-|||..
T Consensus 274 ~~~~~~~v~~~~~~~-------------~~l~i~~~~~~~g------~~~e~i~~--~---~--~g~~~~i~fN~~yL~d 327 (367)
T TIGR00663 274 ADEKRNLVLTLSENG-------------KKLKESSDTQEIG------EAEEEIEV--A---Y--DGEDLVIAFNIKYLLD 327 (367)
T ss_pred hcCCCceEEEEECCC-------------CeEEEEEcCCCCc------cEEEEEEE--E---e--cCCcEEEEECHHHHHH
Confidence 12355554321 2565655432211 12222221 1 2 4789999999999988
Q ss_pred HHhhhccCCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEec
Q 038865 235 FLSFCEGCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATM 282 (345)
Q Consensus 235 il~fae~~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~ 282 (345)
++.-.+. ..|.+.|..+-+|+++.+ -++ . +..++++|+
T Consensus 328 ~l~~~~~--~~v~l~~~~~~~p~~i~~---~~~---~--~~~~limP~ 365 (367)
T TIGR00663 328 ALKALKS--KEIQIQFNDPSKPLLIEP---END---E--KITYLIMPM 365 (367)
T ss_pred HHhcCCC--CEEEEEECCCCCCEEEec---CCC---C--cEEEEEEee
Confidence 8777653 689999999999999863 222 2 346788776
No 29
>PRK14942 DNA polymerase III subunit beta; Provisional
Probab=97.70 E-value=0.018 Score=57.16 Aligned_cols=205 Identities=13% Similarity=0.187 Sum_probs=131.7
Q ss_pred cCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhcCCCCccceEEEEecCCCCCe
Q 038865 23 IGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLRTPTASIDNLTVQLPNSDAPK 102 (345)
Q Consensus 23 igdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk~~~~~vd~~~i~l~d~d~~~ 102 (345)
+=.-++|+..+++|.+-|.|.=|=|+....+... .. ....+-|..|.|.-+.|-.. ..+.+.|.+ +++.
T Consensus 161 ~L~Gv~~~~~~~~l~~vATDg~RLa~~~~~~~~~------~~-~~~~~iIP~k~l~el~kll~-~~~~v~i~~---~~~~ 229 (373)
T PRK14942 161 IFNGLYMIPDGTKLIFVGTDGRRLCKIERTLPSP------LQ-FKDSIIVPAKAVREISKMIA-TSETGNIGL---IDEQ 229 (373)
T ss_pred hheeEEEEEeCCEEEEEEechHHeEEEecccCCC------CC-CCceEEEehHHHHHHHHhcC-CCCcEEEEE---cCCE
Confidence 3455889999999999999999999887766431 01 12568889999888888643 234667776 3344
Q ss_pred EEEEEEeCCCeEEEEEeeecc--cCcccccccCCCCCceEEEEcchhHHHHHhhhcCC----cceEEEEEcCCCCCCCCc
Q 038865 103 VQWTLKCYNGMKKAYWITCNV--EPDIQHLSLDRRRFPSNFVVRPRDLNRLLSNFQSS----LQEITVIATEPTSLPSDA 176 (345)
Q Consensus 103 L~~~l~c~~gI~Kt~~L~~~~--~~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~F~~~----~eeItl~~t~~~~~~s~~ 176 (345)
+.|. +.+ . ++..++.+ -++..+ .+|+ .++..++++.+.|.+.|+..... ..-|.+...+
T Consensus 230 i~f~--~~~-~--~~~srLieG~yPdy~~-vIP~-~~~~~~~v~r~~l~~al~Rv~~~~~~~~~~v~l~~~~-------- 294 (373)
T PRK14942 230 IYVS--ANN-I--ELLCKLIEGNFPNYEQ-VIPK-QTKFSVRISKEEFQVSLRQVLTAAEEPSRQVRLTFSK-------- 294 (373)
T ss_pred EEEE--ECC-E--EEEEEecccCCCChhh-hCCC-CCCeEEEEeHHHHHHHHHHHHHHhhcCCceEEEEEeC--------
Confidence 5544 333 2 22222332 112233 4564 57899999999999999876532 2235555543
Q ss_pred ccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHHHHHHHhhhccCCCeEEEEeeCCCCc
Q 038865 177 ASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELKAFLSFCEGCEVDIHLFFDKAGEP 256 (345)
Q Consensus 177 ~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefkail~fae~~~~~i~i~f~~~G~P 256 (345)
+.+.+.+....... ..-++.+ +| .|++.+|.|+-|||..+|.-.+ +..|.+.|..+..|
T Consensus 295 ------~~l~isa~~~~~g~----~~e~i~~-------~~--~G~~~~I~fN~~ylld~L~~i~--~~~v~l~~~~~~~P 353 (373)
T PRK14942 295 ------NNLNLFAQTLGASE----ADINMPI-------EY--SGEEITIAFKGEYLMDIFRSID--DNEVKIEFSDSSSP 353 (373)
T ss_pred ------CEEEEEEeCCCcce----EEEEEEE-------Ee--cCCcEEEEECHHHHHHHHhcCC--CCeEEEEECCCCCC
Confidence 35666665322110 1111211 23 4889999999999977777665 35899999999999
Q ss_pred EEEeeeccCCCCCCCceEEEEEEEec
Q 038865 257 ILMAPKFGLDDGSGSNFDATLVLATM 282 (345)
Q Consensus 257 l~~~~~f~l~d~~~~~~~a~fvLAT~ 282 (345)
+++++ .++ . ...++++|+
T Consensus 354 ~~i~~---~~~---~--~~~~liMPv 371 (373)
T PRK14942 354 VIFKD---PSD---P--EFISVIMPM 371 (373)
T ss_pred EEEEe---CCC---C--ceEEEEeee
Confidence 99874 233 2 346888886
No 30
>cd00140 beta_clamp Beta clamp domain. The beta subunit (processivity factor) of DNA polymerase III holoenzyme, refered to as the beta clamp, forms a ring shaped dimer that encircles dsDNA (sliding clamp) in bacteria. The beta-clamp is structurally similar to the trimeric ring formed by PCNA (found in eukaryotes and archaea) and the processivity factor (found in bacteriophages T4 and RB69). This structural correspondence further substantiates the mechanistic connection between eukaryotic and prokaryotic DNA replication that has been suggested on biochemical grounds.
Probab=97.58 E-value=0.028 Score=54.74 Aligned_cols=202 Identities=13% Similarity=0.186 Sum_probs=128.5
Q ss_pred CeeEEecccHHHHHHHHHHHhhcC---------ceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEE
Q 038865 1 MEFAVSGNALKTFARCLACLSRIG---------NELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCS 71 (345)
Q Consensus 1 M~~~l~~~~~k~f~rai~~Lskig---------del~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~ 71 (345)
|+|.++.. .|..+|+-.+++. .-++|++.+++|.+.+.|.-+.+...+.... +.. +-.+-
T Consensus 1 M~~~i~~~---~l~~~i~~~~~~~~~~~~~p~L~gvl~e~~~~~l~~~atd~~~~~~~~~~~~~-------~~~-~g~~~ 69 (365)
T cd00140 1 MKFTINRE---ALLEALQKVSRAIESRNTIPILSNVLIEASDGGLTLTATDLEISIKTTIPAEE-------VEE-EGSVT 69 (365)
T ss_pred CEEEEEHH---HHHHHHHHHHhHhCCCCChhHhcCEEEEEECCEEEEEEecceEEEEEEEecee-------ccc-CeEEE
Confidence 88888754 4556666666653 3489999999999999999999987765321 222 35688
Q ss_pred EEchhhHHHhcCCCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHH
Q 038865 72 VLLKAVCAVLRTPTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRL 151 (345)
Q Consensus 72 i~~Ksll~vfk~~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~ 151 (345)
|..|.+..++|... . +.+.|.+. ++.+.|+. . ..+|.++..+.. +-+.++.......+.++...|.+.
T Consensus 70 vp~k~l~~i~k~l~-~-~~v~i~~~---~~~l~i~~--g---~~~~~~~~~~~~--~fP~~~~~~~~~~~~i~~~~l~~~ 137 (365)
T cd00140 70 VPAKKLLDIVRKLP-D-EEVTLETE---ENRLTIKS--G---KSRFSLNTLPAE--EFPELPEIENGSSFTIPASELKEL 137 (365)
T ss_pred EEhHHHHHHHHhCC-C-CcEEEEEc---CCEEEEEE--C---cEEEEEcCCCHH--HCCCCCCCCCCcEEEECHHHHHHH
Confidence 99999999999853 3 78888873 35566554 3 346777665321 223344435567999999999999
Q ss_pred HhhhcCCc---------ceEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCc
Q 038865 152 LSNFQSSL---------QEITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDP 222 (345)
Q Consensus 152 l~~F~~~~---------eeItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~ 222 (345)
|+...... .-|.|.+.+ +.+.+.+.. +.+....++.+.. . .+++
T Consensus 138 l~~v~~~~~~~~~~~~l~gI~~~~~~--------------~~l~l~atD-----~~~~~~~~~~~~~-------~-~~~~ 190 (365)
T cd00140 138 IKKTAFAVSTDETRPILNGVLLEIED--------------NKLRAVATD-----GHRLALREIELES-------G-AEED 190 (365)
T ss_pred HhhEEEEecCccCcccceEEEEEEEC--------------CEEEEEEEc-----CceEEEEEeecCC-------C-CccC
Confidence 98654211 123343322 245454442 1111222222211 0 2456
Q ss_pred eEEEEEhHHHHHHHhhhccCCCeEEEEeeC
Q 038865 223 VDVTFGVKELKAFLSFCEGCEVDIHLFFDK 252 (345)
Q Consensus 223 ~~itF~LKefkail~fae~~~~~i~i~f~~ 252 (345)
.++.|.-|+|..++...+.-+..|.+.+..
T Consensus 191 ~~~~i~~~~l~~l~k~l~~~~~~v~i~~~~ 220 (365)
T cd00140 191 FNVIVPRKTLNELLKLLEDDDEEVEISISE 220 (365)
T ss_pred ceEEEechHHHHHHHhccCCCCcEEEEEeC
Confidence 789999999999888876334467777763
No 31
>PRK14947 DNA polymerase III subunit beta; Provisional
Probab=97.48 E-value=0.052 Score=54.20 Aligned_cols=208 Identities=16% Similarity=0.116 Sum_probs=130.8
Q ss_pred ceEEEEEcC-CeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhcCCCCccceEEEEecCCCCCeE
Q 038865 25 NELVIQASS-HQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLRTPTASIDNLTVQLPNSDAPKV 103 (345)
Q Consensus 25 del~ie~~~-~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk~~~~~vd~~~i~l~d~d~~~L 103 (345)
.-++|+..+ +.|.+-|.|.-|-|+..+..... ... .....+-|..|++.-+.|-.. .+.+.|.+ +.+.+
T Consensus 156 ~Gv~~~~~~~~~l~~vATDg~RLa~~~~~~~~~-~~~----~~~~~~iIP~k~l~el~kll~--~~~v~i~~---~~~~i 225 (384)
T PRK14947 156 ACLKIKPVADNAIEVCGLNGHQFALLRFLNDDI-HAK----LPQEGILIQKKYLLELKKWLG--ADEIELSI---SEKRL 225 (384)
T ss_pred ceEEEEEcCCCEEEEEEcCccceEEEEcccccc-ccc----cCCccEEEechHHHHHHHhCC--CCcEEEEE---eCCEE
Confidence 457888754 56999999999999887654310 000 012356788898888887642 26677777 34556
Q ss_pred EEEEEeCCC-eEEEEEeeecc--cCcccccccCC--CCCceEEEEcchhHHHHHhhhcCCc----ceEEEEEcCCCCCCC
Q 038865 104 QWTLKCYNG-MKKAYWITCNV--EPDIQHLSLDR--RRFPSNFVVRPRDLNRLLSNFQSSL----QEITVIATEPTSLPS 174 (345)
Q Consensus 104 ~~~l~c~~g-I~Kt~~L~~~~--~~~~~~~~~~~--~~~~~~l~i~~~~L~~~l~~F~~~~----eeItl~~t~~~~~~s 174 (345)
.|++ .++ ++-+-+| .+ -++..+ .+|+ ..++..++++-+.|.+.|+...... .-|.+..++
T Consensus 226 ~f~~--~~~~~~~~srL--ieG~fPdY~~-vIP~~~~~~~~~~~i~r~~l~~al~Rvsi~s~~~~~~v~l~~~~------ 294 (384)
T PRK14947 226 FFRT--GDGKETFSLPL--SYYQYPDYMN-FLSKLQGDDVSNLEVDRKECMDALDRILIFNTDNNRCTYFDFGP------ 294 (384)
T ss_pred EEEE--CCcEEEEEEEe--eecccCccee-eCCCCCCCCCEEEEEEHHHHHHHHHHHHHHhcCCCceEEEEEeC------
Confidence 6654 332 2222222 21 112233 4665 3578899999999999998765432 236666543
Q ss_pred CcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHHHHHHHhhhccCCCeEEEEeeCCC
Q 038865 175 DAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELKAFLSFCEGCEVDIHLFFDKAG 254 (345)
Q Consensus 175 ~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefkail~fae~~~~~i~i~f~~~G 254 (345)
+.+.+.+....... .+-.|. . +| .|++.+|.|+-|||..+|.-.++ -.|.+.|..+.
T Consensus 295 --------~~l~iss~~~e~G~------a~E~i~----~-~~--~Ge~~~I~fN~~YL~d~L~~i~~--~~i~l~~~~~~ 351 (384)
T PRK14947 295 --------GELSLSAQGQDVGS------ATESLE----V-TY--SGDIKKIAFPTKNLIEILGHFQS--DKITLTLTGAE 351 (384)
T ss_pred --------CEEEEEEcCCCCce------EEEEEE----E-Ee--cCCcEEEEECHHHHHHHHhcCCC--CeEEEEECCCC
Confidence 35666665332211 111221 1 13 48899999999999777776653 58999999999
Q ss_pred CcEEEeeeccCCCCCCCceEEEEEEEeccc
Q 038865 255 EPILMAPKFGLDDGSGSNFDATLVLATMLV 284 (345)
Q Consensus 255 ~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~~ 284 (345)
+|+++++ .++ . ...++++|+.-
T Consensus 352 ~p~~i~~---~~~---~--~~~~lIMPvr~ 373 (384)
T PRK14947 352 GPCGITG---EDD---P--DYLVIVMPMKI 373 (384)
T ss_pred CCEEEEc---CCC---C--ceEEEEeceEE
Confidence 9999974 232 2 34688888743
No 32
>PRK14946 DNA polymerase III subunit beta; Provisional
Probab=97.38 E-value=0.063 Score=53.29 Aligned_cols=189 Identities=13% Similarity=0.210 Sum_probs=123.2
Q ss_pred ceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhcCCCCccceEEEEecCCCCCeEE
Q 038865 25 NELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLRTPTASIDNLTVQLPNSDAPKVQ 104 (345)
Q Consensus 25 del~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk~~~~~vd~~~i~l~d~d~~~L~ 104 (345)
.-++|+..++.|.+-|.|.=|=|...+.+... . ...+-|..|+|..++.. ...+.+.|.+ +++++.
T Consensus 156 ~Gv~~~~~~~~l~~vATDg~RLA~~~~~~~~~--------~-~~~~iIP~k~l~ell~~--~~~~~v~i~~---~~~~i~ 221 (366)
T PRK14946 156 SAINLKSEDNFLHFSATDTIRFASEKIEISNP--------S-RIDISISAKNLKDFIPP--ELDKDIELFI---ESSKIS 221 (366)
T ss_pred eEEEEEEeCCEEEEEEecchheEEEEeccCCC--------C-cceEEEeccCHHHHhcc--cCCCcEEEEE---eCCEEE
Confidence 45889999999999999999999988766421 1 25577788888776432 2335677777 345555
Q ss_pred EEEEeCCCeEEEEEeeecc--cCcccccccCCCC-CceEEEEcchhHHHHHhhhcCCcce----EEEEEcCCCCCCCCcc
Q 038865 105 WTLKCYNGMKKAYWITCNV--EPDIQHLSLDRRR-FPSNFVVRPRDLNRLLSNFQSSLQE----ITVIATEPTSLPSDAA 177 (345)
Q Consensus 105 ~~l~c~~gI~Kt~~L~~~~--~~~~~~~~~~~~~-~~~~l~i~~~~L~~~l~~F~~~~ee----Itl~~t~~~~~~s~~~ 177 (345)
|.+ .+ + ++..++.+ -++..+ .+|++. +...++++-+.|.+.|+.......+ |.|..++
T Consensus 222 f~~--~~-~--~~~srLieG~fPdy~~-viP~~~~~~~~~~i~r~~l~~al~Rvsl~a~~~~~~v~l~~~~--------- 286 (366)
T PRK14946 222 YTY--DN-L--TIQSRIFTIEYKDISN-VLPKDSEILYSLTIEKKEILDLIDKATIITPGKDNVINFSLSK--------- 286 (366)
T ss_pred EEE--CC-E--EEEEEEecccCCCHHH-hCCCCCCccEEEEEEHHHHHHHHHHhheeecCCCceEEEEEcC---------
Confidence 554 33 2 22222222 122233 467642 5689999999999999887643322 6666643
Q ss_pred cccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHHHHHHHhhhccCCCeEEEEeeCCCCcE
Q 038865 178 SEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELKAFLSFCEGCEVDIHLFFDKAGEPI 257 (345)
Q Consensus 178 ~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefkail~fae~~~~~i~i~f~~~G~Pl 257 (345)
+.+.+.+...+.. ..+..++ ...+| .|++.+|.|+-|||..+|.-.+ ..|.+.|..+-.|+
T Consensus 287 -----~~l~lss~~~e~G------~a~e~i~---~~~~~--~Ge~~~IafN~~YL~D~L~~i~---~~v~l~~~~~~~p~ 347 (366)
T PRK14946 287 -----NELKGYISQYESG------QSNVKTK---NVLRF--SGELAQVNVNYKYLKDAISVFD---KVINIFINEKKTKM 347 (366)
T ss_pred -----CEEEEEEECCCCc------eEEEEec---ccccc--cCCcEEEEEcHHHHHHHHHhCC---CeEEEEECCCCCCE
Confidence 3666766542211 0122221 11234 4889999999999988888887 35999999999999
Q ss_pred EEee
Q 038865 258 LMAP 261 (345)
Q Consensus 258 ~~~~ 261 (345)
++++
T Consensus 348 ~i~~ 351 (366)
T PRK14946 348 LIVS 351 (366)
T ss_pred EEEC
Confidence 9874
No 33
>PF02768 DNA_pol3_beta_3: DNA polymerase III beta subunit, C-terminal domain; InterPro: IPR022635 This entry describes the C-terminal domain of the beta chain of DNA polymerase III. This is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The beta chain is required for initiation of replication from an RNA primer, nucleotide triphosphate (dNTP) residues being added to the 5'-end of the growing DNA chain.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3P16_A 3RB9_B 2AVT_B 2XUR_B 3Q4K_A 3BEP_A 3D1G_A 1UNN_B 3Q4J_D 2POL_A ....
Probab=96.98 E-value=0.011 Score=48.92 Aligned_cols=113 Identities=19% Similarity=0.371 Sum_probs=75.1
Q ss_pred cCCCCCceEEEEcchhHHHHHhhhcC----CcceEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEe
Q 038865 132 LDRRRFPSNFVVRPRDLNRLLSNFQS----SLQEITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWI 207 (345)
Q Consensus 132 ~~~~~~~~~l~i~~~~L~~~l~~F~~----~~eeItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I 207 (345)
+| ..++..++++.+.|.+.|+-... ...-|.|.+++ +.+.+++...... ....++.+
T Consensus 4 iP-~~~~~~i~i~r~~L~~al~Rv~~~~~~~~~~v~l~~~~--------------~~l~l~~~~~~~g----~~~e~i~~ 64 (121)
T PF02768_consen 4 IP-TEFETSITIDRKELLDALKRVSIISSEKNNPVKLSFSD--------------NQLTLSSQSSEIG----EAEEEIPI 64 (121)
T ss_dssp S--SSESEEEEEEHHHHHHHHHHHHHHHTTTTGEEEEEEET--------------TEEEEEEEETTTE----EEEEEEE-
T ss_pred CC-CCCCEEEEEEHHHHHHHHHHHHHHhhcCCceEEEEEEC--------------CEEEEEEcCCCCc----eEEEEEee
Confidence 45 45789999999999999988753 34577787765 3677777543221 11222221
Q ss_pred cCCccceeecccCCceEEEEEhHHHHHHHhhhccCCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEec
Q 038865 208 DPTEEFVQYTHSGDPVDVTFGVKELKAFLSFCEGCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATM 282 (345)
Q Consensus 208 ~~~eEF~~y~~~~~~~~itF~LKefkail~fae~~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~ 282 (345)
+| .|++.+|.|+-|||..+|.-.+ +-.|.++|..+.+|+++++ -+|. .-.++|+|+
T Consensus 65 -------~~--~g~~~~i~fN~~yL~d~L~~~~--~~~V~l~~~~~~~p~~i~~---~~d~-----~~~~liMP~ 120 (121)
T PF02768_consen 65 -------EY--EGEPLEIAFNPKYLLDALKAID--GEEVTLEFSDPSSPILITP---EEDP-----DFKYLIMPM 120 (121)
T ss_dssp -------EE--EES-EEEEEEHHHHHHHHHCC---SSEEEEEESSTTS-EEEEE---TTSS-----CEEEEE--B
T ss_pred -------ee--cCCceEEEECHHHHHHHHhhcC--CCEEEEEEcCCCCCEEEEe---CCCC-----ceEEEEEec
Confidence 12 3789999999999988888776 3589999999999999974 2332 347788775
No 34
>PRK01115 DNA polymerase sliding clamp; Validated
Probab=96.95 E-value=0.033 Score=51.66 Aligned_cols=93 Identities=8% Similarity=0.134 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhcCCCCccc
Q 038865 10 LKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLRTPTASID 89 (345)
Q Consensus 10 ~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk~~~~~vd 89 (345)
-+.|.+++.-++.+++++.|.+++++|.|++.+. ..|...+....+.|..|+.+. ++..+.+.+.|+.++|.. ..-+
T Consensus 138 ~~~l~~~~~r~~~~~~~v~i~~~~~~l~lsa~~~-g~a~~~i~~~~~~~~~~~g~e-~~~i~fn~~YL~d~lk~~-~~~~ 214 (247)
T PRK01115 138 GDDLKDAIKDAELVSDHIELEADEDKFYIEAEGE-GEDEVELSLDSGPLIELSVEE-PAKSSYSLDYLKDMVKAT-SASD 214 (247)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeCCEEEEEEEeC-CceEEEEecCCCceEEEEecC-ceeEEEhHHHHHHhhccc-cCCC
Confidence 3789999999999999999999999999999998 888888888888888899865 489999999999999983 3347
Q ss_pred eEEEEecCCCCCeEEEEE
Q 038865 90 NLTVQLPNSDAPKVQWTL 107 (345)
Q Consensus 90 ~~~i~l~d~d~~~L~~~l 107 (345)
++.|++.+ + .-+.++.
T Consensus 215 ~V~l~~~~-~-~P~~l~~ 230 (247)
T PRK01115 215 EVTIEFGS-D-MPLKLEF 230 (247)
T ss_pred eEEEEECC-C-CCEEEEE
Confidence 88888843 3 4455554
No 35
>KOG3194 consensus Checkpoint 9-1-1 complex, RAD1 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.88 E-value=0.083 Score=49.38 Aligned_cols=246 Identities=11% Similarity=0.146 Sum_probs=147.5
Q ss_pred EEecccHHHHHHHHHHHhhc--CceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEE----EEEEchhh
Q 038865 4 AVSGNALKTFARCLACLSRI--GNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQ----CSVLLKAV 77 (345)
Q Consensus 4 ~l~~~~~k~f~rai~~Lski--gdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~----~~i~~Ksl 77 (345)
.....++-.-.-+..||.-+ .|++.+-++.||+.+..-| .+.--+...+.+.+|..|.+....+. |++..+++
T Consensus 12 ~~~~~~~env~tl~~~lkav~~kd~~t~ha~~dg~kftven-~~~~~a~~fi~~~~f~sfkvreesv~~~~~~~is~~sl 90 (279)
T KOG3194|consen 12 SASTVHLENVTTLLSCLKAVGFKDDVTIHADADGLKFTVEN-NHVIKAQLFISRELFMSFKVREESVDHMKLMVISNSSL 90 (279)
T ss_pred eeeeehhhhHHhHHHHHhhhccccceEEEEecCCcEEEEEc-CeEeeehhhccHHHhcchhhhhhhhhhhhhheeehhhh
Confidence 33333334444455556555 6899999999999998776 56777888899999999999765554 88888887
Q ss_pred HHHhcC-CCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCcccccccCC--CCCceEEEEcchhHHHHHhh
Q 038865 78 CAVLRT-PTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQHLSLDR--RRFPSNFVVRPRDLNRLLSN 154 (345)
Q Consensus 78 l~vfk~-~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~~~~~--~~~~~~l~i~~~~L~~~l~~ 154 (345)
-...-. ..+..-.|+++. ++-.+-+++.+.-- |+++...+.-.... +...++. ....+++-+.+..|.+++..
T Consensus 91 ~~~~s~~m~~~~~~~kvsY-~G~g~P~i~~vEd~-G~vt~c~~~tte~~--kd~D~n~~~t~v~~kiilKse~L~eAlke 166 (279)
T KOG3194|consen 91 DSFSSMIMSDDLVECKVSY-DGHGSPFILIVEDA-GVVTECVELTTELE--KDLDFNFLETNVIFKIILKSEGLHEALKE 166 (279)
T ss_pred hhhhccccCCCceEEEEEe-cCCCCceEEEEecc-ceEEEeeecchhhh--hccCccccchhhHHHHHHhhHHHHHHHHH
Confidence 664432 246677889988 55667788887665 87766665322221 2222222 22335667788999999999
Q ss_pred hcCCcceEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCC----ccceeecccCCceEEEEEhH
Q 038865 155 FQSSLQEITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPT----EEFVQYTHSGDPVDVTFGVK 230 (345)
Q Consensus 155 F~~~~eeItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~----eEF~~y~~~~~~~~itF~LK 230 (345)
+....+-+.+..+++. -...|+.|.+-+. |+|.+-.+ |-|.. .+.+.-.|-+-
T Consensus 167 LD~tsevl~It~s~dk------------~~F~L~tfG~lG~-------S~i~~Ps~s~~mEs~~~----~~ev~~sy~fS 223 (279)
T KOG3194|consen 167 LDMTSEVLQITMSPDK------------PYFRLSTFGNLGS-------SHIDYPSDSSLMESFQC----FDEVIGSYDFS 223 (279)
T ss_pred hhhcceeEEEEecCCC------------cEEEEEEecccCc-------ceecCCCcHHHHHHhhh----hhhhhceEeeh
Confidence 9988877777776642 2567777765443 33443222 22322 22222333333
Q ss_pred HHHHHHhhhccCCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEe
Q 038865 231 ELKAFLSFCEGCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLAT 281 (345)
Q Consensus 231 efkail~fae~~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT 281 (345)
-++.+...- .++..|.++.+..|. +..+|-++.+.+.--.++|..-|
T Consensus 224 li~~~tkAl-~lasKv~lR~DerGv---LS~qimi~~~dg~itfiefc~vp 270 (279)
T KOG3194|consen 224 LIDKITKAL-KLASKVLLRMDERGV---LSVQIMIQTDDGIITFIEFCMVP 270 (279)
T ss_pred hhHHHHHHH-hhhheEEEEEcCCcE---EEEEEEEecCCceEEEEEEEEee
Confidence 333332211 235567788887764 23335454321112235665555
No 36
>PF02747 PCNA_C: Proliferating cell nuclear antigen, C-terminal domain; InterPro: IPR022649 Proliferating cell nuclear antigen (PCNA), or cyclin, is a non-histone acidic nuclear protein [] that plays a key role in the control of eukaryotic DNA replication []. It acts as a co-factor for DNA polymerase delta, which is responsible for leading strand DNA replication []. The sequence of PCNA is well conserved between plants and animals, indicating a strong selective pressure for structure conservation, and suggesting that this type of DNA replication mechanism is conserved throughout eukaryotes []. In Saccharomyces cerevisiae (Baker's yeast), POL30, is associated with polymerase III, the yeast analog of polymerase delta. Homologues of PCNA have also been identified in the archaea (Euryarchaeota and Crenarchaeota) and in Paramecium bursaria Chlorella virus 1 (PBCV-1) and in nuclear polyhedrosis viruses. ; GO: 0003677 DNA binding, 0030337 DNA polymerase processivity factor activity, 0006275 regulation of DNA replication, 0043626 PCNA complex; PDB: 1IZ5_A 1IZ4_A 1GE8_A 1ISQ_A 3A2F_B 1RWZ_A 3P83_A 1RXM_A 1RXZ_A 1SXJ_F ....
Probab=96.81 E-value=0.14 Score=43.04 Aligned_cols=106 Identities=16% Similarity=0.183 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEe-----CccCCceeeecCCEEEEEEEchhhHHHhcCC
Q 038865 10 LKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITF-----MPNFFDVYTVSGAQVQCSVLLKAVCAVLRTP 84 (345)
Q Consensus 10 ~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f-----~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk~~ 84 (345)
-..|++++..|..|||.+.|.++++++.+++-....++-..+.= .++--...++.+ +++...+++.|..+.|.
T Consensus 15 S~~f~~~~kdl~~v~d~v~i~~~~~~~~f~~~Gd~~~~~v~~~~~~~~~~~~~~~~i~~~~-~~~~~fsl~YL~~~~Ka- 92 (128)
T PF02747_consen 15 SSEFKKICKDLSSVGDTVTISADKDSVIFSAEGDIGSAEVEFKETESSEDDEELIEIEVKE-PVSSSFSLDYLNDFSKA- 92 (128)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEETTEEEEEEEESSEEEEEEEEEEEEETTCTCESEEEESS-EEEEEEEHHHHHHHGGG-
T ss_pred HHHHHHHHHHHHhcCCEEEEEEeCCEEEEEEEeccCcEEEEEeeccccccccccceeeecc-ceeeEEeHHHHHhhhcc-
Confidence 46899999999999999999999999999998765544443321 223333455555 58889999999999987
Q ss_pred CCccceEEEEecCCCCCeEEEEEEeCCCeEEEEEe
Q 038865 85 TASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWI 119 (345)
Q Consensus 85 ~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L 119 (345)
..--+.++|.+. +.--|.+++.-..|-.-+|.|
T Consensus 93 ~~ls~~V~l~l~--~~~Pl~l~f~~~~~g~l~f~L 125 (128)
T PF02747_consen 93 APLSDEVTLELG--EDMPLKLEFELADGGSLKFYL 125 (128)
T ss_dssp GGTTSEEEEEEE--TTSEEEEEEEETTTEEEEEEE
T ss_pred ccCCceEEEEEc--CCCCEEEEEEeCCCeEEEEEE
Confidence 344589999985 344577776555554445544
No 37
>PLN00057 proliferating cell nuclear antigen; Provisional
Probab=96.70 E-value=0.048 Score=51.65 Aligned_cols=116 Identities=13% Similarity=0.234 Sum_probs=88.8
Q ss_pred cchhHHHHHhhhcCCcceEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCce
Q 038865 144 RPRDLNRLLSNFQSSLQEITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPV 223 (345)
Q Consensus 144 ~~~~L~~~l~~F~~~~eeItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~ 223 (345)
.++.|+++++-.....+|+++.++++ .+.++.- |..+.....+.|..+ -|++|. +.++.
T Consensus 8 ~a~~~k~i~~ai~~lvde~~~~~t~~--------------Gi~~~am-----D~s~Valv~l~l~~~-~F~eY~-~d~~~ 66 (263)
T PLN00057 8 QGSLLKKVLEAIKDLVSDANFDCSET--------------GLSLQAM-----DSSHVALVALLLRAD-GFEHYR-CDRNL 66 (263)
T ss_pred chHHHHHHHHHHHHHhheeEEEEcCC--------------eEEEEEE-----cCCcEEEEEEEeChh-cCeEEe-cCCce
Confidence 46899999999999999999999975 3445443 233445667888776 899998 66678
Q ss_pred EEEEEhHHHHHHHhhhccCCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEeccccc
Q 038865 224 DVTFGVKELKAFLSFCEGCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATMLVSQ 286 (345)
Q Consensus 224 ~itF~LKefkail~fae~~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~~~~ 286 (345)
.+.+++..|..+|..|.. +-.+.+.++..+.++.+. |. +. ..+...+|.|.++..++
T Consensus 67 ~~gv~l~~l~kiLk~~~~-~d~l~l~~~~~~~~l~i~--~~--~~-~~~~~~~f~l~l~d~~~ 123 (263)
T PLN00057 67 SMGINLANMSKILKCAGN-DDIITIKADDGGDTVTFM--FE--SP-KQDRISDFELKLMDIDS 123 (263)
T ss_pred EEEEEHHHHHHHHhccCC-CCEEEEEecCCCCEEEEE--EE--cC-CCceEEEEEEEeeecCc
Confidence 899999999999999964 678888888888999887 32 21 13446788888887643
No 38
>TIGR00590 pcna proliferating cell nuclear antigen (pcna). All proteins in this family for which functions are known form sliding DNA clamps that are used in DNA replication processes. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.66 E-value=0.048 Score=51.52 Aligned_cols=115 Identities=13% Similarity=0.222 Sum_probs=87.9
Q ss_pred cchhHHHHHhhhcCCcceEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCce
Q 038865 144 RPRDLNRLLSNFQSSLQEITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPV 223 (345)
Q Consensus 144 ~~~~L~~~l~~F~~~~eeItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~ 223 (345)
+++.|+++++-.....+|+++.+++++ +.++.- |+.+.....+.|..+ -|++|. +.+++
T Consensus 8 ~a~~~k~i~eai~~lv~e~~~~~t~~G--------------i~~~am-----D~s~Valv~l~l~~~-~F~~Y~-~d~~~ 66 (259)
T TIGR00590 8 QASLLKKILEAIKDLVNDANFDCSESG--------------ISLQAM-----DSSHVSLVSLTLRSE-GFDTYR-CDRNL 66 (259)
T ss_pred cHHHHHHHHHHHHHHhceeeEEECCCe--------------EEEEEE-----cCCcEEEEEEEcCHH-hCceEe-cCCce
Confidence 458999999999988999999999753 444443 233445667888765 799998 67778
Q ss_pred EEEEEhHHHHHHHhhhccCCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEecccc
Q 038865 224 DVTFGVKELKAFLSFCEGCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATMLVS 285 (345)
Q Consensus 224 ~itF~LKefkail~fae~~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~~~ 285 (345)
.+.+++..|..+|..+.. +-.+.+.++..|.++.+. |.-.. ++...+|.|.++..+
T Consensus 67 ~~gv~l~~l~kiLk~~~~-~d~l~l~~~~~~~~l~i~--~~~~~---~~~~~~f~l~l~d~~ 122 (259)
T TIGR00590 67 ALGVNLTSLSKILKCANN-EDIVTLKAEDNADTLILV--FESPK---QDKISDYELKLMDID 122 (259)
T ss_pred EEEEEHHHHHHHHhccCC-CCEEEEEecCCCCEEEEE--EEcCC---CCeEEEEEEEeeecc
Confidence 999999999999999975 677888888888999987 32211 244678888887654
No 39
>PF00705 PCNA_N: Proliferating cell nuclear antigen, N-terminal domain; InterPro: IPR022648 Proliferating cell nuclear antigen (PCNA), or cyclin, is a non-histone acidic nuclear protein [] that plays a key role in the control of eukaryotic DNA replication []. It acts as a co-factor for DNA polymerase delta, which is responsible for leading strand DNA replication []. The sequence of PCNA is well conserved between plants and animals, indicating a strong selective pressure for structure conservation, and suggesting that this type of DNA replication mechanism is conserved throughout eukaryotes []. In Saccharomyces cerevisiae (Baker's yeast), POL30, is associated with polymerase III, the yeast analog of polymerase delta. Homologues of PCNA have also been identified in the archaea (Euryarchaeota and Crenarchaeota) and in Paramecium bursaria Chlorella virus 1 (PBCV-1) and in nuclear polyhedrosis viruses. ; GO: 0003677 DNA binding, 0030337 DNA polymerase processivity factor activity, 0006275 regulation of DNA replication, 0043626 PCNA complex; PDB: 1U76_E 2ZVK_B 1VYJ_A 1UL1_B 3P87_D 2ZVM_C 2ZVL_A 1AXC_C 3VKX_A 3TBL_B ....
Probab=96.29 E-value=0.23 Score=41.84 Aligned_cols=95 Identities=13% Similarity=0.224 Sum_probs=73.9
Q ss_pred cchhHHHHHhhhcCCcceEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCce
Q 038865 144 RPRDLNRLLSNFQSSLQEITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPV 223 (345)
Q Consensus 144 ~~~~L~~~l~~F~~~~eeItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~ 223 (345)
.+..|+++++-+..-.+|+++.++++ .+.+++-.. .+-.-..+.|..+ -|++|. +.+++
T Consensus 8 ~a~~~K~i~eal~~lv~e~~f~~~~~--------------Gi~~~amD~-----s~Valv~l~l~~~-~F~~Y~-~d~~~ 66 (127)
T PF00705_consen 8 DASLFKKIFEALKDLVDEANFEFTED--------------GISLQAMDP-----SHVALVDLELPSE-AFEEYR-CDKEL 66 (127)
T ss_dssp SHHHHHHHHHHHTTTCSEEEEEEESS--------------EEEEEEE-T-----TSSEEEEEEEEGG-GSSEEE-ESSSE
T ss_pred chHHHHHHHHHHHHHhhEEEEEEccC--------------CEEEEEECC-----CcEEEEEEEechh-cceEEE-cCCCE
Confidence 57999999999999999999999974 466766633 3335567888765 899998 67889
Q ss_pred EEEEEhHHHHHHHhhhccCCCeEEEEeeCCCCcEEEe
Q 038865 224 DVTFGVKELKAFLSFCEGCEVDIHLFFDKAGEPILMA 260 (345)
Q Consensus 224 ~itF~LKefkail~fae~~~~~i~i~f~~~G~Pl~~~ 260 (345)
.+.++++.|..++.-|.. +-.+.+..+....=+.+.
T Consensus 67 ~igvnl~~l~kiLk~~~~-~D~l~l~~~~~~~~l~i~ 102 (127)
T PF00705_consen 67 SIGVNLSDLKKILKRAKK-DDSLELESDEEPDKLNIV 102 (127)
T ss_dssp EEEEEHHHHHHHHTTSST-TSEEEEEEESSSSEEEEE
T ss_pred EEEEEHHHHHHHHhhccC-CCEEEEEEeCCCCEEEEE
Confidence 999999999999999986 457777776443334344
No 40
>PRK14943 DNA polymerase III subunit beta; Provisional
Probab=95.69 E-value=2.4 Score=41.79 Aligned_cols=133 Identities=14% Similarity=0.171 Sum_probs=86.7
Q ss_pred CeeEEecccHHHHHHHHHHHhhc---------CceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEE
Q 038865 1 MEFAVSGNALKTFARCLACLSRI---------GNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCS 71 (345)
Q Consensus 1 M~~~l~~~~~k~f~rai~~Lski---------gdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~ 71 (345)
|+|+++...+ .++|+-..++ =.-++|++.+++|.|.+-|.-++....+.. .+.. +-.+-
T Consensus 1 Mk~~i~~~~L---~~~l~~v~~~v~~~~~~piL~gill~~~~~~l~l~aTD~~~~~~~~~~~--------~~~~-~g~~~ 68 (374)
T PRK14943 1 MKFKINKDHF---LNGLRQVLNVVSSKTTMPILSNVLIEAENGQISLTTTNLDLGIRCVIKA--------NVLR-EGTVT 68 (374)
T ss_pred CEEEEEHHHH---HHHHHHHHhHhCCCCChHHhcCEEEEEECCEEEEEEECccEEEEEEEEe--------eecc-CeEEE
Confidence 8888877643 3444444443 245899999999999999997655444421 2222 35678
Q ss_pred EEchhhHHHhcCCCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHH
Q 038865 72 VLLKAVCAVLRTPTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRL 151 (345)
Q Consensus 72 i~~Ksll~vfk~~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~ 151 (345)
|..|.+..+.|... .+.+.|... +.+.+.+ .+.+ .+|.+...+.. +-+.++.......+.++.+.|.+.
T Consensus 69 vpak~l~ei~k~l~--~~~i~i~~~--~~~~~~i--~~~~---~~~~l~~l~~~--~fP~~p~~~~~~~~~i~~~~l~~~ 137 (374)
T PRK14943 69 LPVKKLATIVRELP--EAEVQVDAN--QNNQAKV--ESGG---SQFKIMGIPAE--EFPPLPSFEQATVFQLEQSELRDM 137 (374)
T ss_pred EEhHHHHHHHHhCC--CCceEEEEc--CCCeEEE--EECC---EEEEEccCCHH--HCCCCCCCCCCcEEEECHHHHHHH
Confidence 99999999999853 246677662 2344444 4543 55776544322 223455545667899999999999
Q ss_pred Hhhhc
Q 038865 152 LSNFQ 156 (345)
Q Consensus 152 l~~F~ 156 (345)
++.-.
T Consensus 138 i~~v~ 142 (374)
T PRK14943 138 LKSVE 142 (374)
T ss_pred HhhEe
Confidence 98654
No 41
>PRK05643 DNA polymerase III subunit beta; Validated
Probab=95.32 E-value=3.2 Score=40.72 Aligned_cols=209 Identities=16% Similarity=0.210 Sum_probs=126.1
Q ss_pred CeeEEecccHHHHHHHHHHHhhcC---------ceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEE
Q 038865 1 MEFAVSGNALKTFARCLACLSRIG---------NELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCS 71 (345)
Q Consensus 1 M~~~l~~~~~k~f~rai~~Lskig---------del~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~ 71 (345)
|+|+++. +.|.++|+..+++. .-+.|++.+++|.|.+.|.-.++...+.-.-. + + .-.+-
T Consensus 1 Mk~~i~~---~~l~~~l~~~~~~i~~~~~~piL~~ili~~~~~~l~l~atd~~~~~~~~~~~~~~----~---~-~G~~~ 69 (367)
T PRK05643 1 MKFTISR---NALLKALQLVQGAVERRNTIPILSNVLIEAEGGKLSLTATDLEISIETTIPAEVE----V---E-EGSIT 69 (367)
T ss_pred CEEEEEH---HHHHHHHHHHhhhcCCCCChhHhcCEEEEEeCCEEEEEEECcceEEEEEEEeeEc----c---c-CeEEE
Confidence 8888875 45667777777763 34899999999999999998887776642211 1 2 24678
Q ss_pred EEchhhHHHhcCCCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHH
Q 038865 72 VLLKAVCAVLRTPTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRL 151 (345)
Q Consensus 72 i~~Ksll~vfk~~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~ 151 (345)
|..|.+..+.|... ..+.+.|++. +.+.+.+ .|.+ ..|+|+..+. + +-+.++.......+.++...|.+.
T Consensus 70 v~~k~l~eiik~l~-~~~~i~i~~~--~~~~l~i--~~~~---~~~~l~~~~~-~-~fP~~~~~~~~~~~~i~~~~l~~~ 139 (367)
T PRK05643 70 VPAKKLLDIVRKLP-DGAEITLELE--ENNRLTI--KSGK---SRFNLPTLPA-E-DFPNLPEIEEEVSFTLPQKTLKRL 139 (367)
T ss_pred EEhHHHHHHHHcCC-CCCcEEEEEC--CCCEEEE--EECC---EEEEeccCCH-H-HCCCCCCCCCCcEEEECHHHHHHH
Confidence 99999999999853 3336888773 2244544 4554 3688876642 2 333445444457899999999999
Q ss_pred HhhhcC--Ccc-------eEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCc
Q 038865 152 LSNFQS--SLQ-------EITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDP 222 (345)
Q Consensus 152 l~~F~~--~~e-------eItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~ 222 (345)
++.... +.+ -|-|.+. ++.+.+.+. |+.+...+.+.++.. ..++
T Consensus 140 i~~v~~a~~~~~~~piL~gi~~~~~--------------~~~l~l~aT-----D~~rl~~~~~~~~~~--------~~~~ 192 (367)
T PRK05643 140 IEKTQFAMSTQETRYYLNGVLLEIE--------------GNELRAVAT-----DGHRLAVRKLELEEG--------SLGD 192 (367)
T ss_pred HhheeEEeecCCccccccEEEEEEe--------------CCEEEEEEe-----ccceeEEEEecccCC--------cccC
Confidence 985431 111 1222221 123333332 222223333332211 1124
Q ss_pred eEEEEEhHHHHHHHhhhccCCCeEEEEeeCCCCcEEEe
Q 038865 223 VDVTFGVKELKAFLSFCEGCEVDIHLFFDKAGEPILMA 260 (345)
Q Consensus 223 ~~itF~LKefkail~fae~~~~~i~i~f~~~G~Pl~~~ 260 (345)
.+++..-|.|..++..... +..|.+.++. .-+.|+
T Consensus 193 ~~~~vp~k~l~ei~k~l~~-~~~v~i~~~~--~~~~~~ 227 (367)
T PRK05643 193 FSVIIPRKTLLELQKLLDD-EEPVEIFISD--NQILFE 227 (367)
T ss_pred ceEEEchHHHHHHHHhcCC-CCcEEEEEeC--CEEEEE
Confidence 5688989999887777652 3457777652 335544
No 42
>PHA03383 PCNA-like protein; Provisional
Probab=95.11 E-value=0.88 Score=43.17 Aligned_cols=118 Identities=9% Similarity=0.154 Sum_probs=84.1
Q ss_pred cchhHHHHHhhhcCCcceEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCce
Q 038865 144 RPRDLNRLLSNFQSSLQEITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPV 223 (345)
Q Consensus 144 ~~~~L~~~l~~F~~~~eeItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~ 223 (345)
+++.|+++++-...-.+|++|.+++++ +.++.-.. .+-.-..+.|..+ -|++|. +.++.
T Consensus 14 ~a~~~K~iieai~~lv~e~~f~~t~~G--------------i~lqamD~-----shVaLv~l~L~~~-~F~~Y~-~d~~~ 72 (262)
T PHA03383 14 QGSVIKSLFDVLKEILHDVNIFFRPTG--------------VYISALDG-----AKVSLVHMKLDAE-SFEEYH-CDQTY 72 (262)
T ss_pred chHHHHHHHHHHHHHhceEEEEECCCc--------------EEEEEECC-----CcEEEEEEEeCHH-hCceEe-cCCce
Confidence 679999999999999999999999753 45554422 2223356788765 799998 78888
Q ss_pred EEEEEhHHHHHHHhhhccCCCeEEEEe-eCCCCcEEEeeeccCCCCCCCceEEEEEEEeccccccc
Q 038865 224 DVTFGVKELKAFLSFCEGCEVDIHLFF-DKAGEPILMAPKFGLDDGSGSNFDATLVLATMLVSQLQ 288 (345)
Q Consensus 224 ~itF~LKefkail~fae~~~~~i~i~f-~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~~~~~~ 288 (345)
.+.+++.+|+.+|.-|.. +-.+.+.. +..+.-+.+. |. +. ..+...+|.|.-+..++-+
T Consensus 73 ~iGv~~~~l~KILk~a~~-~D~l~l~~~~~~~~~l~i~--~~--~~-~~~~~~~f~l~Lidi~~e~ 132 (262)
T PHA03383 73 EIGVNVSNMFKLLRTAGS-HDSILFRYLKNSPHFLEIT--IQ--NF-EKNSLTKFQLKLIEIDSSR 132 (262)
T ss_pred EEEEEHHHHHHHHhccCC-CCEEEEEecCCCCCEEEEE--EE--eC-CCCcEEEEEEEccccCccc
Confidence 899999999999999974 66777764 4455556655 32 21 1233567888777655433
No 43
>PRK14945 DNA polymerase III subunit beta; Provisional
Probab=95.03 E-value=3.9 Score=40.21 Aligned_cols=203 Identities=13% Similarity=0.155 Sum_probs=121.7
Q ss_pred CeeEEecccHHHHHHHHHHHhhcC---------ceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEE
Q 038865 1 MEFAVSGNALKTFARCLACLSRIG---------NELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCS 71 (345)
Q Consensus 1 M~~~l~~~~~k~f~rai~~Lskig---------del~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~ 71 (345)
|+|++.. +.|.++|+.++++. .-++|++.+++|.|.+-|.--+.-..+.. .+.+ +=.+-
T Consensus 1 Mkf~i~k---~~l~~~l~~v~~~i~~k~~~piL~~ili~a~~~~l~l~atd~~~~i~~~i~~--------~i~~-~G~~~ 68 (362)
T PRK14945 1 MNVRVPK---KTLSEGLGLLERIIPSRSSNPLLTYLKVELSEGGLTLSGTNGEVDLEVTLPA--------EVQG-PGRVV 68 (362)
T ss_pred CEEEEEH---HHHHHHHHHHHhhcCCCCchhhhcCEEEEEeCCEEEEEEECCcEEEEEEEee--------eecc-CeEEE
Confidence 8888865 46678888888875 67999999999999999976554444321 1222 35677
Q ss_pred EEchhhHHHhcCCCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHH
Q 038865 72 VLLKAVCAVLRTPTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRL 151 (345)
Q Consensus 72 i~~Ksll~vfk~~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~ 151 (345)
|+.|-+..++|... -+.++++. +.++|.++ |.. -.|+|+..+..+.....+.. ...+.++...|.+.
T Consensus 69 v~ak~l~~ivk~lp--~~~i~~~~---~~~~l~i~--~~~---~~~~l~~~~~~~fP~~~~~~---~~~~~i~~~~L~~~ 135 (362)
T PRK14945 69 VPAHLFFQIVRNLP--GELVELEF---QGGELEVR--SGS---SRTKLQTAPPEGYPELSFPS---QGDVRLSAGELAKA 135 (362)
T ss_pred EEccCHHHHHHhCC--CCcEEEEE---cCCEEEEE--ECC---EEEEeccCChHHCCCCCCCC---CceEEECHHHHHHH
Confidence 99999999999853 23577766 23455554 543 36888776532222222221 23479999999999
Q ss_pred HhhhcC--Ccce-------EEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCc
Q 038865 152 LSNFQS--SLQE-------ITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDP 222 (345)
Q Consensus 152 l~~F~~--~~ee-------Itl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~ 222 (345)
++.-.. +.++ |-|.+.+ +.+.+.+. |+.+....++.++ ..++
T Consensus 136 i~~v~~avs~~~~~piL~gv~l~~~~--------------~~l~lvAT-----Dg~rla~~~~~~~----------~~~~ 186 (362)
T PRK14945 136 LTHVRYAASNEEFQAIFRGVKLEHSP--------------QGLRAVAS-----DGYRLAIYDLPAS----------QGQG 186 (362)
T ss_pred HhhEEEEEecccchhheeeEEEEEeC--------------CEEEEEEE-----ccceEEEEEeccC----------CCCC
Confidence 986532 1111 2222211 22333222 2112122222111 2335
Q ss_pred eEEEEEhHHHHHHHhhhccCCCeEEEEeeCCCCcEEEe
Q 038865 223 VDVTFGVKELKAFLSFCEGCEVDIHLFFDKAGEPILMA 260 (345)
Q Consensus 223 ~~itF~LKefkail~fae~~~~~i~i~f~~~G~Pl~~~ 260 (345)
..++.+-|.|..++.....-+ .+.+.++ .+. +.|+
T Consensus 187 ~~~iip~k~l~el~k~l~~~~-~v~i~~~-~~~-i~~~ 221 (362)
T PRK14945 187 RKLVIPARSADELVRVLKDGD-EASLALG-EGV-LTLT 221 (362)
T ss_pred ceEEEEHHHHHHHHHhcCCCC-cEEEEEc-CCE-EEEE
Confidence 679999999988888876433 6777776 323 5544
No 44
>cd00577 PCNA Proliferating Cell Nuclear Antigen (PCNA) domain found in eukaryotes and archaea. These polymerase processivity factors play a role in DNA replication and repair. PCNA encircles duplex DNA in its central cavity, providing a DNA-bound platform for the attachment of the polymerase. The trimeric PCNA ring is structurally similar to the dimeric ring formed by the DNA polymerase processivity factors in bacteria (beta subunit DNA polymerase III holoenzyme) and in bacteriophages (catalytic subunits in T4 and RB69). This structural correspondence further substantiates the mechanistic connection between eukaryotic and prokaryotic DNA replication that has been suggested on biochemical grounds. PCNA is also involved with proteins involved in cell cycle processes such as DNA repair and apoptosis. Many of these proteins contain a highly conserved motif known as the PIP-box (PCNA interacting protein box) which contains the sequence Qxx[LIM]xxF[FY].
Probab=95.01 E-value=0.94 Score=41.37 Aligned_cols=105 Identities=13% Similarity=0.192 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcC-CccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhcCCCCccc
Q 038865 11 KTFARCLACLSRIGNELVIQASSHQLAFHTLNS-SRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLRTPTASID 89 (345)
Q Consensus 11 k~f~rai~~Lskigdel~ie~~~~gL~L~avNs-SrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk~~~~~vd 89 (345)
+.|..++.=++-+++++.|.+++++|.|++-+. ..++...+.-...-+..|.++. ++....+.|.|..++|.. ..-+
T Consensus 138 ~~L~~~i~~~~~~~~~i~i~~~~~~l~lss~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fn~~yL~~~l~~~-~~s~ 215 (248)
T cd00577 138 DELKDIVRDLESISDSVTISASKDGFKFSAEGELGGASVTLLPKDSDLLVTIECSE-PVSSTYSLKYLKDFTKAA-PLSD 215 (248)
T ss_pred HHHHHHHHHHHHcCCEEEEEEcCCEEEEEEeecCCceEEEEecCCCCceEEEEeCC-ceEEEEhHHHHHHHhhhc-ccCC
Confidence 788999999999999999999999999999886 3343333333334455566655 699999999999999984 3357
Q ss_pred eEEEEecCCCCCeEEEEEEeCCCeEEEEEe
Q 038865 90 NLTVQLPNSDAPKVQWTLKCYNGMKKAYWI 119 (345)
Q Consensus 90 ~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L 119 (345)
++.|++.+ ..-+.++..+.++...+|-|
T Consensus 216 ~v~i~~~~--~~p~~i~~~~~~~~~~~f~l 243 (248)
T cd00577 216 KVTLSFGS--DGPLSLEFKIADGGHLTFYL 243 (248)
T ss_pred eEEEEEcC--CCCEEEEEEcCCCcEEEEEE
Confidence 89999843 36788887766433445544
No 45
>TIGR00663 dnan DNA polymerase III, beta subunit. University).
Probab=94.76 E-value=4.6 Score=39.62 Aligned_cols=133 Identities=11% Similarity=0.146 Sum_probs=90.2
Q ss_pred CeeEEecccHHHHHHHHHHHhhcC---------ceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEE
Q 038865 1 MEFAVSGNALKTFARCLACLSRIG---------NELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCS 71 (345)
Q Consensus 1 M~~~l~~~~~k~f~rai~~Lskig---------del~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~ 71 (345)
|+|+++... |.++|+-.+++. .-++|++.+++|.|.+.|.-+++...+... ...+ +-.+-
T Consensus 1 Mk~~i~~~~---L~~~l~~v~~~i~~~~~~piL~gvlle~~~~~l~l~atD~~~~~~~~~~~~-------~~~~-~g~~~ 69 (367)
T TIGR00663 1 MKFIIERDD---LLKELSKVQRVLSNRPTIPILSNILLEVKDDKLTITATDLDISLESQIFTI-------NSEQ-EGSVT 69 (367)
T ss_pred CEEEEEHHH---HHHHHHHHHhHhcCCCchhhhcCEEEEEECCEEEEEEECCceEEEEEEecc-------cccc-CeEEE
Confidence 888887654 455555555542 358999999999999999999988766411 1122 34678
Q ss_pred EEchhhHHHhcCCCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHH
Q 038865 72 VLLKAVCAVLRTPTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRL 151 (345)
Q Consensus 72 i~~Ksll~vfk~~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~ 151 (345)
|..|.+..+.|... -+.+.|.+. .+.+.|+ +.. ..|.++..+.. +-+.++.......+.++...|.++
T Consensus 70 vp~k~l~ei~k~l~--~~~i~i~~~---~~~l~i~--~~~---~~~~~~~l~~~--~fP~~~~~~~~~~~~i~~~~l~~~ 137 (367)
T TIGR00663 70 INAKKFLDIVRALP--DSKITLEVK---NDKLAIT--SEK---SRFKLPTLSAE--EFPNLPTIEEGVSIEIPSDVLKEA 137 (367)
T ss_pred EEhHHHHHHHHhCC--CCceEEEEc---CCEEEEE--ECc---EEEEecCCCHH--HCCCCCCcCCCcEEEECHHHHHHH
Confidence 99999999999853 356777763 3455544 443 45888765421 223344444457889999999999
Q ss_pred Hhhhc
Q 038865 152 LSNFQ 156 (345)
Q Consensus 152 l~~F~ 156 (345)
++...
T Consensus 138 i~~v~ 142 (367)
T TIGR00663 138 INQTA 142 (367)
T ss_pred HhhEE
Confidence 98643
No 46
>PRK14941 DNA polymerase III subunit beta; Provisional
Probab=94.53 E-value=5.5 Score=39.51 Aligned_cols=209 Identities=11% Similarity=0.142 Sum_probs=125.3
Q ss_pred CeeEEecccHHHHHHHHHHHhhc---------CceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEE
Q 038865 1 MEFAVSGNALKTFARCLACLSRI---------GNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCS 71 (345)
Q Consensus 1 M~~~l~~~~~k~f~rai~~Lski---------gdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~ 71 (345)
|+|++.-. .|.++|+.++++ -.-+.|++.+++|.|.+-|.--+--..+.. .+.. +=.+-
T Consensus 1 Mkf~i~k~---~l~~~l~~v~~~v~~k~~~piL~~ill~a~~~~l~l~atD~e~~i~~~i~~--------~~~~-~G~~~ 68 (374)
T PRK14941 1 MKFTSSIK---QLQEAVNKVAQAIPAKSIDPRFENIHLTLENGKLTLFATDGELSITAKTEV--------ESSD-SGNIG 68 (374)
T ss_pred CEEEEEHH---HHHHHHHHHHhhhcCCCchhHhcCEEEEEECCEEEEEEECCCeEEEEEEee--------eecc-ceEEE
Confidence 88888764 556777777776 346899999999999999977554444321 2332 35689
Q ss_pred EEchhhHHHhcCCCCccceEEEEecCC---CCCeEEEEEEeCCCeEEEEEeeecccCcccccccCCCCCceEEEEcchhH
Q 038865 72 VLLKAVCAVLRTPTASIDNLTVQLPNS---DAPKVQWTLKCYNGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDL 148 (345)
Q Consensus 72 i~~Ksll~vfk~~~~~vd~~~i~l~d~---d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L 148 (345)
|+.|.+..++|.... +.+.|+..+. +.+.+ .+.|.. ..|+|+... .+. +.++.......+.++...|
T Consensus 69 v~a~~l~~ivk~lp~--~~i~~~~~~~~~~~~~~l--~I~~~~---~~f~l~~~~-~~~--p~~~~~~~~~~~~i~~~~L 138 (374)
T PRK14941 69 IRARTLQDFLRSMYD--TEVTFSIERQEISDHGTV--HIATDK---GRYKIPCLF-ESK--PEKQEKNFDISLDLETSEL 138 (374)
T ss_pred EEhHHHHHHHHcCCC--CcEEEEEeccccCCCCEE--EEEECC---EEEEeeccC-ccc--CCCcCCCCceEEEECHHHH
Confidence 999999999999632 4567766311 23444 445653 457887763 222 3455445557899999999
Q ss_pred HHHHhhhc--CCcce-------EEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeeccc
Q 038865 149 NRLLSNFQ--SSLQE-------ITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHS 219 (345)
Q Consensus 149 ~~~l~~F~--~~~ee-------Itl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~ 219 (345)
.++++.-. .+.++ |-|++. ++.+.+.+. |+.+...+++.++.. .
T Consensus 139 ~~~i~~v~~a~s~~~~rpiL~Gv~l~~~--------------~~~l~lvAT-----Dg~Rla~~~~~~~~~--------~ 191 (374)
T PRK14941 139 LDLIQKTIFACSVDGMRPAMMGVLFELE--------------GNTITAVST-----DGHRLVRCRKNSSVG--------V 191 (374)
T ss_pred HHHHhheeEEEecccchhhhceEEEEEe--------------CCEEEEEEe-----cCeeEEEEEecccCC--------c
Confidence 99998643 12222 222221 123333222 222223333322111 1
Q ss_pred CCceEEEEEhHHHHHHHhhhccCCCeEEEEeeCCCCcEEEe
Q 038865 220 GDPVDVTFGVKELKAFLSFCEGCEVDIHLFFDKAGEPILMA 260 (345)
Q Consensus 220 ~~~~~itF~LKefkail~fae~~~~~i~i~f~~~G~Pl~~~ 260 (345)
.++.+++..-|.|..+..+.+. ..+.+.++..+.=+.|.
T Consensus 192 ~~~~~~iiP~k~l~el~kll~~--~~v~i~~~~~~~~i~~~ 230 (374)
T PRK14941 192 EEKQKIVVPARVLSILQKLAQH--ETVTMSIDSERRFVRFI 230 (374)
T ss_pred cccceEEechHHHHHHHHhCCC--CceEEEEEcCCCEEEEE
Confidence 2345788999988766666553 25777777555556655
No 47
>smart00480 POL3Bc DNA polymerase III beta subunit.
Probab=94.37 E-value=5.5 Score=38.81 Aligned_cols=186 Identities=15% Similarity=0.159 Sum_probs=110.8
Q ss_pred ceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhcCCCCccceEEEEecCCCCCeEE
Q 038865 25 NELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLRTPTASIDNLTVQLPNSDAPKVQ 104 (345)
Q Consensus 25 del~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk~~~~~vd~~~i~l~d~d~~~L~ 104 (345)
.-+.|++.+++|.|.+-|.-.+.-..+.- .+...+=.+-|+.|.+..+.|... . +.+.|+.. +++|.
T Consensus 15 ~~ill~a~~~~l~l~atd~e~~i~~~i~~--------~~~~~~G~~~v~a~~l~~ivk~lp-~-~~i~~~~~---~~~l~ 81 (345)
T smart00480 15 SNILLEAKDDGLTLTATDLEISIKSSISA--------EVEDEEGSVTVPAKKFLDIVRKLP-D-KEITLSVE---EDKLV 81 (345)
T ss_pred cCEEEEEECCEEEEEEECCceEEEEEEEe--------eEccCCeEEEEEhHHHHHHHHhCC-C-CceEEEEc---CCEEE
Confidence 56889999999999999987665555531 122023568899999999999953 2 66777763 34554
Q ss_pred EEEEeCCCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHHHhhhcC--Ccce-------EEEEEcCCCCCCCC
Q 038865 105 WTLKCYNGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRLLSNFQS--SLQE-------ITVIATEPTSLPSD 175 (345)
Q Consensus 105 ~~l~c~~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~F~~--~~ee-------Itl~~t~~~~~~s~ 175 (345)
+ .|. ..+|+|+..+.. +-+.++.......+.++...|.++++.-.. +.++ |-|.+.
T Consensus 82 i--~~~---~~~~~l~~~~~~--~fP~~~~~~~~~~~~i~~~~L~~~i~~v~~a~s~~~~~piL~Gi~~~~~-------- 146 (345)
T smart00480 82 I--TSG---KSRFNLPTLDAE--EFPELPFIEEGVTFELPTKLLKEGIEKTAFAVSTDETRPVLNGVNLEIS-------- 146 (345)
T ss_pred E--EEC---cEEEEecCCCHH--HCCCCCCcCCCcEEEECHHHHHHHHhhEEEEEecCCCcceeeEEEEEEE--------
Confidence 4 454 355888776422 223444444446899999999999985532 1111 222221
Q ss_pred cccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHHHHHHHhhhccCCCeEEEEeeCCCC
Q 038865 176 AASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELKAFLSFCEGCEVDIHLFFDKAGE 255 (345)
Q Consensus 176 ~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefkail~fae~~~~~i~i~f~~~G~ 255 (345)
++.+.+.+- |+.+....++.++. ..++..++...|.|..++.....-+..|.+.++ . .
T Consensus 147 ------~~~l~lvAT-----Dg~rla~~~~~~~~---------~~~~~~~ivP~k~l~el~k~l~~~~~~v~i~~~-~-~ 204 (345)
T smart00480 147 ------NGELRLVAT-----DGHRLAVREIKLES---------EEDDFSVIIPRKSLLELNKLLTDNEELVEIFIS-S-N 204 (345)
T ss_pred ------CCEEEEEEE-----cCceEEEEEeccCC---------CCCcceEEEehHHHHHHHHhccCCCCcEEEEEe-C-C
Confidence 122333222 22222222222211 112357999999999988887653456777776 2 2
Q ss_pred cEEEe
Q 038865 256 PILMA 260 (345)
Q Consensus 256 Pl~~~ 260 (345)
=+.|.
T Consensus 205 ~~~~~ 209 (345)
T smart00480 205 QILFE 209 (345)
T ss_pred EEEEE
Confidence 35544
No 48
>PRK14940 DNA polymerase III subunit beta; Provisional
Probab=94.27 E-value=6.1 Score=39.04 Aligned_cols=133 Identities=11% Similarity=0.184 Sum_probs=90.2
Q ss_pred CeeEEecccHHHHHHHHHHHhhcC---------ceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEE
Q 038865 1 MEFAVSGNALKTFARCLACLSRIG---------NELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCS 71 (345)
Q Consensus 1 M~~~l~~~~~k~f~rai~~Lskig---------del~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~ 71 (345)
|+|++.- +.|.++|+..+++. .-+.|++.+++|.|.+-|.--+.-..+. -.+.. +=.+-
T Consensus 1 Mkf~i~k---~~l~~~l~~v~~~v~~k~~~piL~~ill~a~~~~l~l~atD~e~~i~~~i~--------~~i~e-~G~v~ 68 (367)
T PRK14940 1 MKILCEK---EALLKEISIAQEIISTKKALSILSNVLLAAQDGSLTIKATDTKVSFETSIP--------VNILA-EGSTT 68 (367)
T ss_pred CEEEEEH---HHHHHHHHHHHhhccCCCchHHhcCEEEEEECCEEEEEEECCceEEEEEEE--------eeecc-CeEEE
Confidence 7888865 45677777777763 4589999999999999997754444332 12333 35678
Q ss_pred EEchhhHHHhcCCCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHH
Q 038865 72 VLLKAVCAVLRTPTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRL 151 (345)
Q Consensus 72 i~~Ksll~vfk~~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~ 151 (345)
|+.|-+..+.|.... +.+.+.+. ++++. +.|..| ...|+|+..+..+ -+.++.......+.+++..|+++
T Consensus 69 v~ak~l~~ivk~lp~--~~i~~~~~---~~~l~--I~~~~~-~~~f~l~~~~~~~--fP~~~~~~~~~~~~i~~~~L~~~ 138 (367)
T PRK14940 69 VFCDKFVGILSSLPT--GEIELELC---DEQLV--ITPPNK-KISFQLKTISHES--FPCFPENEGGVSFAIPTKDLREM 138 (367)
T ss_pred EEhHHHHHHHHhCCC--CceEEEEc---CCEEE--EEEcCC-ceEEEEccCChHH--CCCCCCCCCCeEEEECHHHHHHH
Confidence 999999999998532 36677662 34544 456444 3458988765322 23344444446889999999999
Q ss_pred Hhhh
Q 038865 152 LSNF 155 (345)
Q Consensus 152 l~~F 155 (345)
++.-
T Consensus 139 i~~v 142 (367)
T PRK14940 139 INQT 142 (367)
T ss_pred HhhE
Confidence 9854
No 49
>PTZ00113 proliferating cell nuclear antigen; Provisional
Probab=93.63 E-value=2.2 Score=40.83 Aligned_cols=116 Identities=12% Similarity=0.238 Sum_probs=80.1
Q ss_pred cchhHHHHHhhhcCCcceEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCce
Q 038865 144 RPRDLNRLLSNFQSSLQEITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPV 223 (345)
Q Consensus 144 ~~~~L~~~l~~F~~~~eeItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~ 223 (345)
+++.|+++++-.....+|++|.+++++ +.++.-.. .+-.-..+.|..+ -|++|. +.++.
T Consensus 8 ~a~~~K~i~eal~~lv~e~~f~~t~~G--------------i~lqamD~-----shVaLv~l~l~~~-~FeeY~-cd~~~ 66 (275)
T PTZ00113 8 NASVLRRLFECIKDLVSDGNIDFDETG--------------LKLQALDG-----NHVALVHLKLHDS-GFSHYR-CDRER 66 (275)
T ss_pred cHHHHHHHHHHHHHHhceEEEEECCCe--------------EEEEEECC-----CcEEEEEEEeCHH-hCeEEe-cCCCc
Confidence 458999999999999999999999753 44554422 2223356778765 899998 77788
Q ss_pred EEEEEhHHHHHHHhhhccCCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEeccccc
Q 038865 224 DVTFGVKELKAFLSFCEGCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATMLVSQ 286 (345)
Q Consensus 224 ~itF~LKefkail~fae~~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~~~~ 286 (345)
.+.+++..|+.+|..|.. +-.+.+..+..+.=+.|. | ++.. .+-..+|-|-.+..++
T Consensus 67 ~lGvn~~~l~KILk~~~~-~D~l~l~~~~~~~~l~i~--~--~~~~-~~~~~~f~l~L~di~~ 123 (275)
T PTZ00113 67 ALGINIASVTKVFKLCSN-NDSVLIQSEEDKDNINFV--F--ENNV-EDKVSSFSLKLMSIEQ 123 (275)
T ss_pred EEEEEHHHHHHHHHhCCC-CCEEEEEEcCCCCEEEEE--E--EcCC-CceEEEEEEEccccCc
Confidence 999999999999999865 566666654333345554 2 2211 1224567777665544
No 50
>PTZ00483 proliferating cell nuclear antigen; Provisional
Probab=93.51 E-value=2 Score=40.79 Aligned_cols=93 Identities=14% Similarity=0.177 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCC-ceeeecCCEEEEEEEchhhHHHhcCCCCcc
Q 038865 10 LKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFF-DVYTVSGAQVQCSVLLKAVCAVLRTPTASI 88 (345)
Q Consensus 10 ~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF-~~Y~~~~~~~~~~i~~Ksll~vfk~~~~~v 88 (345)
-..|+|++..|+.|||.+.|.++++++.+++--...++-.. |+.+-= -...+.+ +++....++.|..+.|. ..--
T Consensus 147 s~~f~~i~kdl~~vsD~v~i~~~~~~v~f~a~Gd~~~~~~~--l~~~~~~v~~~~~~-~v~~~fsl~YL~~f~Ka-~~ls 222 (264)
T PTZ00483 147 SKKFQEFAKYLHSIGDTVSISMKKDEMRLETEGEGIKASKQ--FHNDVGDVRVTSTE-SLSQEFATRYLVLFSKA-TSLA 222 (264)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEECCEEEEEEeecCcEEEEE--EccCCCceEEEecC-cchheehHHHHHHhhcc-ccCC
Confidence 46799999999999999999999999999998776664444 432110 1223333 46667788998888886 4556
Q ss_pred ceEEEEecCCCCCeEEEEEE
Q 038865 89 DNLTVQLPNSDAPKVQWTLK 108 (345)
Q Consensus 89 d~~~i~l~d~d~~~L~~~l~ 108 (345)
+.++|.+. ++--|.+++.
T Consensus 223 d~V~i~l~--~~~Pl~ley~ 240 (264)
T PTZ00483 223 DEVSINLS--AGIPLSVKFN 240 (264)
T ss_pred CeEEEEEc--CCCCEEEEEE
Confidence 78899985 3333444443
No 51
>PF00712 DNA_pol3_beta: DNA polymerase III beta subunit, N-terminal domain; InterPro: IPR022634 This entry describes the N-terminal domain of the beta chain of DNA polymerase III. This is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The beta chain is required for initiation of replication from an RNA primer, nucleotide triphosphate (dNTP) residues being added to the 5'-end of the growing DNA chain.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3P16_A 3RB9_B 2AWA_C 1VPK_A 2XUR_B 3Q4K_A 3BEP_A 3D1G_A 1UNN_B 3Q4J_D ....
Probab=93.23 E-value=2 Score=35.42 Aligned_cols=103 Identities=13% Similarity=0.201 Sum_probs=72.6
Q ss_pred CeeEEecccHHHHHHHHHHHhhcC---------ceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEE
Q 038865 1 MEFAVSGNALKTFARCLACLSRIG---------NELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCS 71 (345)
Q Consensus 1 M~~~l~~~~~k~f~rai~~Lskig---------del~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~ 71 (345)
|+|.+.- +.|.++|+.++++. .-+.|++.+++|.|+|-|..-+.-..+.-... .++-.+-
T Consensus 1 Mkf~i~k---~~L~~~l~~v~~~i~~k~~~piL~~ili~a~~~~l~l~atD~e~~i~~~i~~~~~--------~~~G~~~ 69 (120)
T PF00712_consen 1 MKFTINK---EELLKALSKVSKVIPSKSTIPILSNILIEAKDNKLTLTATDLEISIRTTIPAEIE--------EEEGSIL 69 (120)
T ss_dssp EEEEEEH---HHHHHHHHHHHTCSSSSSSSGGGGEEEEEEETTEEEEEEE-SSEEEEEEEETEEE--------EE-EEEE
T ss_pred CEEEEEH---HHHHHHHHHHHhhhCCCCChHHhccEEEEEeCCEEEEEEEcCeEEEEEEEeceee--------cCCeEEE
Confidence 7777765 45678888888864 47999999999999999987555444432222 1235788
Q ss_pred EEchhhHHHhcCCCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecc
Q 038865 72 VLLKAVCAVLRTPTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNV 123 (345)
Q Consensus 72 i~~Ksll~vfk~~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~ 123 (345)
|+.|-+..++|.. ...+.++|+.. ++++.++ |.+ -.|+|+..+
T Consensus 70 v~ak~l~~ivk~l-p~~~~I~i~~~---~~~l~I~--~~~---~~f~l~~~~ 112 (120)
T PF00712_consen 70 VPAKKLFDIVKKL-PDDEEITIEVE---ENKLTIK--SGK---SRFKLPTLD 112 (120)
T ss_dssp EEHHHHHHHHHHS-SSTSEEEEEEE---TTEEEEE--ETT---EEEEEE-BE
T ss_pred EEhHHHHHHHHhC-CCCCeEEEEEe---CCEEEEE--ECC---EEEEEcCCC
Confidence 9999999999995 34477888873 3777777 554 677877654
No 52
>PRK14947 DNA polymerase III subunit beta; Provisional
Probab=93.15 E-value=3.4 Score=41.26 Aligned_cols=133 Identities=14% Similarity=0.111 Sum_probs=86.9
Q ss_pred CeeEEecccHHHHHHHHHHHhhcC---------ceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEE
Q 038865 1 MEFAVSGNALKTFARCLACLSRIG---------NELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCS 71 (345)
Q Consensus 1 M~~~l~~~~~k~f~rai~~Lskig---------del~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~ 71 (345)
|+|+++-..+ .++|+.++++. .-++|++.+++|.|.+-|.--+--..+.. .+.. +=++-
T Consensus 1 Mkf~i~k~~l---~~~L~~v~~~i~~k~~~pIL~~ili~a~~~~L~l~atD~ei~i~~~i~~--------~i~e-~G~~~ 68 (384)
T PRK14947 1 MYLKVNKEDV---IDGLQKAANIIPAKTGAAYLRTIWLKAEDGTLSIMSTDSNIEFRGTYPA--------EVTE-PGLAG 68 (384)
T ss_pred CEEEEEHHHH---HHHHHHHHhhhCCCCcchhhcCEEEEEECCEEEEEEECCcEEEEEEEee--------eecc-CeEEE
Confidence 8888887644 56666666652 56899999999999999977443332211 2332 35688
Q ss_pred EEchhhHHHhcCCCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHH
Q 038865 72 VLLKAVCAVLRTPTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRL 151 (345)
Q Consensus 72 i~~Ksll~vfk~~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~ 151 (345)
|+.|.+..+.|.... +.+.|.+. .+.+.+.+ .|. ...|+|+..+.. +-+.++...-...+.++...|+++
T Consensus 69 v~ak~l~divk~lp~--~~i~i~~~-~~~~~l~I--~~g---~s~f~l~~~~~~--~fP~~~~~~~~~~~~i~~~~L~~~ 138 (384)
T PRK14947 69 VQGRAFVDLVRKLPP--GEITLKLD-ASSGNLLI--EQG---RRKYKLPVNDPS--WFQNFSAFPAEGAVVWSGDFLQEL 138 (384)
T ss_pred EEhHHHHHHHHhCCC--CceEEEEe-CCCCEEEE--EEC---CeEEEEcCCCHH--HCCCCCCCCCCcEEEECHHHHHHH
Confidence 999999999998532 35677663 23345555 465 355888876422 222333333346789999999999
Q ss_pred Hhhh
Q 038865 152 LSNF 155 (345)
Q Consensus 152 l~~F 155 (345)
++.-
T Consensus 139 i~~t 142 (384)
T PRK14947 139 IDRI 142 (384)
T ss_pred Hhhe
Confidence 9754
No 53
>PRK06673 DNA polymerase III subunit beta; Validated
Probab=92.10 E-value=14 Score=36.78 Aligned_cols=136 Identities=13% Similarity=0.125 Sum_probs=88.2
Q ss_pred CeeEEecccHHHHHHHHHHHhhcC---------ceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCce--eeecCCEEE
Q 038865 1 MEFAVSGNALKTFARCLACLSRIG---------NELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDV--YTVSGAQVQ 69 (345)
Q Consensus 1 M~~~l~~~~~k~f~rai~~Lskig---------del~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~--Y~~~~~~~~ 69 (345)
|+|++.-. .|.++|+..+++. .-++|++.+++|.|.+-|.--+--..+. ...-+. -.+.. +=.
T Consensus 1 Mkf~i~k~---~L~~~L~~v~~~i~~k~~~piL~~ill~a~~~~l~l~atD~e~~i~~~i~--~~~~~~~~~~i~~-~G~ 74 (376)
T PRK06673 1 MEFIVNHK---HFTQALSEVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIP--SAIDDEQITTILQ-AGT 74 (376)
T ss_pred CEEEEEHH---HHHHHHHHHHHHhCCCCCchhhcCEEEEEcCCeEEEEEECCcEEEEEEEe--ccccccccccccc-CEE
Confidence 88888764 5667888887763 4589999999999999997644333332 111111 11212 246
Q ss_pred EEEEchhhHHHhcCCCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHH
Q 038865 70 CSVLLKAVCAVLRTPTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLN 149 (345)
Q Consensus 70 ~~i~~Ksll~vfk~~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~ 149 (345)
+-|..|.+..++|.... + +.+... +...+.+ .|. ...|+|+..+.. +-+.++.......+.+++..|+
T Consensus 75 v~v~ak~l~~ivk~lp~--~-i~~~~~--~~~~l~I--~~~---~~~f~l~~~~~~--dfP~~~~~~~~~~~~i~~~~L~ 142 (376)
T PRK06673 75 IVVPAKYFIEIIKKMPS--D-IVIKSK--NEQTITI--QSG---EITLNLNGFPAN--EFPNVPQIDDHTEIQIETKQLI 142 (376)
T ss_pred EEEEhHHHHHHHHcCCC--C-cEEEEC--CCCEEEE--EEC---CEEEEEcCCCHH--HCCCCCCCCCCceEEECHHHHH
Confidence 88999999999999532 2 455442 2334444 454 356888876532 3334554444567899999999
Q ss_pred HHHhh
Q 038865 150 RLLSN 154 (345)
Q Consensus 150 ~~l~~ 154 (345)
++++.
T Consensus 143 ~~i~k 147 (376)
T PRK06673 143 DAFKQ 147 (376)
T ss_pred HHHhh
Confidence 99974
No 54
>PRK14946 DNA polymerase III subunit beta; Provisional
Probab=91.83 E-value=6.1 Score=39.20 Aligned_cols=134 Identities=10% Similarity=0.102 Sum_probs=88.9
Q ss_pred CeeEEecccHHHHHHHHHHHhhcC--------ceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEE
Q 038865 1 MEFAVSGNALKTFARCLACLSRIG--------NELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSV 72 (345)
Q Consensus 1 M~~~l~~~~~k~f~rai~~Lskig--------del~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i 72 (345)
|+|++.-. .|.++|+.++++. .-++|++.+++|.|.|-|.--+.-..+.-... -.+.. +=.+-|
T Consensus 1 Mkf~i~k~---~L~~~l~~v~~~v~~~~~~iL~~iliea~~~~l~l~atD~ei~i~~~i~~~~~----~~i~e-~G~~~v 72 (366)
T PRK14946 1 MKFTIEKE---IIEKQIERMQSAILNNGNSPLSGFFLKLTRSGLFIISTNSELSYKSFINKKDL----IEIND-VGSCLI 72 (366)
T ss_pred CEEEEEHH---HHHHHHHHHHhhcCCCCCcccccEEEEEECCeEEEEEECCcEEEEEEEeCCcC----ceecc-CeEEEE
Confidence 88888765 4556666666653 34889999999999999977655444421100 11322 346889
Q ss_pred EchhhHHHhcCCCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHHH
Q 038865 73 LLKAVCAVLRTPTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRLL 152 (345)
Q Consensus 73 ~~Ksll~vfk~~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~l 152 (345)
+.|.+..+.|.+. + .+.++. +++++.+ .|. ..+|+|+..+..+ -+.++.......+.+++..|++++
T Consensus 73 ~ak~l~eIvk~lp-~--~I~~~~---~~~~l~I--~s~---~s~f~l~~~~~~~--fP~~~~~~~~~~~~i~~~~l~~~i 139 (366)
T PRK14946 73 DGVFLKNIIKKSD-N--QISFEL---IGSELKV--FWE---DAQFSKTLRDSSF--FPEINFEQKGIKLTVNAKNLKRAI 139 (366)
T ss_pred EcHHHHHHHHcCC-C--cEEEEE---eCCEEEE--EEC---ceEEEEcCCCHHH--CCCCCcccCCcEEEECHHHHHHHH
Confidence 9999999999963 2 366665 2345544 465 4568888775322 234454445568899999999999
Q ss_pred hhh
Q 038865 153 SNF 155 (345)
Q Consensus 153 ~~F 155 (345)
+.-
T Consensus 140 ~kt 142 (366)
T PRK14946 140 KNT 142 (366)
T ss_pred hhE
Confidence 864
No 55
>PRK07761 DNA polymerase III subunit beta; Validated
Probab=91.32 E-value=16 Score=36.07 Aligned_cols=131 Identities=16% Similarity=0.203 Sum_probs=87.5
Q ss_pred CeeEEecccHHHHHHHHHHHhhcCce---------EEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEE
Q 038865 1 MEFAVSGNALKTFARCLACLSRIGNE---------LVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCS 71 (345)
Q Consensus 1 M~~~l~~~~~k~f~rai~~Lskigde---------l~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~ 71 (345)
|+|++.. +.|.++|+..+++... +.|++.+++|.|.|-|.--+.-..+. . .+.+ +=++-
T Consensus 1 Mkf~i~k---~~l~~~l~~v~~~v~~k~~~piL~~iliea~~~~l~l~atd~~~~i~~~i~--~------~i~~-~G~~~ 68 (376)
T PRK07761 1 MKFRVER---DVLADAVAWVARSLPARPPVPVLAGVLLEADDGGLTLSGFDYEVSARVTIE--A------EVDE-PGRVL 68 (376)
T ss_pred CEEEEEH---HHHHHHHHHHHhhcCCCCCcHHHcCeEEEEeCCEEEEEEECccEEEEEEEE--e------Eecc-CceEE
Confidence 8888875 4567888888887553 89999999999999997654444331 1 2322 34678
Q ss_pred EEchhhHHHhcCCCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHH
Q 038865 72 VLLKAVCAVLRTPTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRL 151 (345)
Q Consensus 72 i~~Ksll~vfk~~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~ 151 (345)
|..|.+..+.|.+.. +.+++.. +.+.+.+ .|.. ..|+|+..+..+ -+.++... ...+.++...|.+.
T Consensus 69 v~~k~l~~iik~lp~--~~i~~~~---~~~~l~I--~~~~---~~~~l~~~~~~~--fP~~~~~~-~~~~~i~~~~L~~~ 135 (376)
T PRK07761 69 VSGRLLADITRSLPN--KPVDISV---DGSRVTL--TCGS---ARFTLPTMPVED--YPTLPELP-EATGTVDADAFAEA 135 (376)
T ss_pred EEHHHHHHHHHhCCC--CcEEEEE---cCCEEEE--EECc---eEEEecCCCHHH--CCCCCCCC-CcceEECHHHHHHH
Confidence 999999999998532 3577766 2345544 4653 458888764322 22333221 23458999999999
Q ss_pred Hhhhc
Q 038865 152 LSNFQ 156 (345)
Q Consensus 152 l~~F~ 156 (345)
++.-.
T Consensus 136 i~~v~ 140 (376)
T PRK07761 136 VSQVA 140 (376)
T ss_pred HhhEe
Confidence 98643
No 56
>PF02144 Rad1: Repair protein Rad1/Rec1/Rad17; InterPro: IPR003021 REC1 of Ustilago maydis plays a key role in regulating the genetic system of the fungus. REC1 mutants are very sensitive to UV light. Mutation leads to a complex phenotype with alterations in DNA repair, recombination, mutagenesis, meiosis and cell division []. The predicted product of the REC1 gene is a polypeptide of 522 amino acid residues with molecular mass 57kDa. The protein shows 3'--5' exonuclease activity, but only in cells over-expressing REC1 []. While it is distinguishable from the major bacterial nucleases, the protein has certain enzymatic features in common with epsilon, the proof-reading exonuclease subunit of Escherichia coli DNA polymerase III holoenzyme []. The rad1 gene of Schizosaccharomyces pombe comprises three exons and encodes a 37kDa protein that exhibits partial similarity to the REC1 gene of U. maydis []. The two genes share putative functional similarities in their respective organisms.; GO: 0003684 damaged DNA binding, 0008853 exodeoxyribonuclease III activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3G65_B 3GGR_C 3A1J_C.
Probab=89.96 E-value=2.6 Score=40.13 Aligned_cols=94 Identities=10% Similarity=0.156 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhhc-CceEEEEEcC---CeEEEEEEcCCccEEEEEEeCc--cCCceeeec--CCEEEEEEEchhhHHHhc
Q 038865 11 KTFARCLACLSRI-GNELVIQASS---HQLAFHTLNSSRSAYQSITFMP--NFFDVYTVS--GAQVQCSVLLKAVCAVLR 82 (345)
Q Consensus 11 k~f~rai~~Lski-gdel~ie~~~---~gL~L~avNsSrSA~~~~~f~~--~FF~~Y~~~--~~~~~~~i~~Ksll~vfk 82 (345)
..|+.|+.=|... ++++.|.+++ ..|.|++..+--+ ..+.|+. +.++.|+|. ......+-..+.+.+++|
T Consensus 174 ~~L~~al~eL~~~~~~~l~i~~s~~~~p~f~l~s~G~~G~--s~v~fp~~~~~le~f~~~~~~~~~~~~Y~f~~i~~~~k 251 (275)
T PF02144_consen 174 DWLRDALSELDWSNSEELTIYISPPDKPHFRLSSKGPLGS--SKVDFPNDSDVLETFECYDGEEPVISRYKFSLIKKAMK 251 (275)
T ss_dssp HHHHHHHHTT-TS-CSEEEEEE-S-SSSSEEEEEEETTEE--EEEEE-TTSTSEEEEEE----S-EEEEEEHHHHCCHHH
T ss_pred HHHHHHHHHHhhccCCeEEEEEEeCCCCEEEEEEEcCCCe--EEEEECCCCCceeEEEEeccCceEEEEEeHHHHHHHHH
Confidence 4577889999999 9999999999 5999999976555 5555554 689999998 444666678888888887
Q ss_pred CCCCccceEEEEecCCCCCeEEEEEEe
Q 038865 83 TPTASIDNLTVQLPNSDAPKVQWTLKC 109 (345)
Q Consensus 83 ~~~~~vd~~~i~l~d~d~~~L~~~l~c 109 (345)
.+ +-=.++.|+.+ ...-|.+++-|
T Consensus 252 Al-~~ssKv~ir~d--~~GlLs~Q~mi 275 (275)
T PF02144_consen 252 AL-KISSKVSIRID--ENGLLSLQFMI 275 (275)
T ss_dssp HH-TTSSEEEEEEE--SSS-EEEEEEE
T ss_pred Hh-hhccEEEEEeC--CCcEEEEEEeC
Confidence 63 23367888873 56778888743
No 57
>PRK14942 DNA polymerase III subunit beta; Provisional
Probab=89.91 E-value=22 Score=35.31 Aligned_cols=138 Identities=14% Similarity=0.149 Sum_probs=88.2
Q ss_pred CeeEEecccHHHHHHHHHHHhhc---------CceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEE
Q 038865 1 MEFAVSGNALKTFARCLACLSRI---------GNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCS 71 (345)
Q Consensus 1 M~~~l~~~~~k~f~rai~~Lski---------gdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~ 71 (345)
|+|+++- +.|.++|+..+++ -.-++|++.+++|.|.+-|.--+--..+. . .+.. +=.+-
T Consensus 1 Mkf~i~k---~~L~~~l~~v~~~i~~k~~~pIL~~ili~a~~~~l~l~atD~ei~i~~~i~--~------~i~e-~G~~~ 68 (373)
T PRK14942 1 MKIKVNT---SEFLKAIHAVEGVISVREIKSILSNLKIEAEEKEVFLSATDLEISIKTSVP--A------TVGQ-KGTAS 68 (373)
T ss_pred CEEEEEH---HHHHHHHHHHHhhcCCCCCchhhcCEEEEEECCEEEEEEECCCeEEEEEEe--e------eecc-CeEEE
Confidence 8888875 4566777777775 35689999999999999996633333331 1 2333 35688
Q ss_pred EEchhhHHHhcCCCCccceEEEEecCCCCCeEEEEEEeCCCe-EEEEEeeecccCcccccccCCCCCceEEEEcchhHHH
Q 038865 72 VLLKAVCAVLRTPTASIDNLTVQLPNSDAPKVQWTLKCYNGM-KKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNR 150 (345)
Q Consensus 72 i~~Ksll~vfk~~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI-~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~ 150 (345)
|..|-+..++|........+++...+.+.+.+.++ |..|. ...|+|+..+. + +-+.++.......+.+++..|++
T Consensus 69 vpak~l~eivr~lp~~~~~i~~~~~~~~~~~~~I~--~~~~~~~~~f~l~~~~~-~-dfP~~~~~~~~~~~~i~~~~L~~ 144 (373)
T PRK14942 69 LPAKQLSSFFKTIHFETTLLSLEESDSESSIVYIT--DASGKNDYKSKISGMDA-E-EIKTISKVDESQVSSFPSQLIND 144 (373)
T ss_pred EEhHHHHHHHHhCCCCCceEEEEEccCCCCEEEEE--ECCCCCccEEEEccCCH-H-HCCCCCCCCCceEEEECHHHHHH
Confidence 99999999999953221235554411122445554 43343 24699987643 2 22334444455678999999999
Q ss_pred HHhh
Q 038865 151 LLSN 154 (345)
Q Consensus 151 ~l~~ 154 (345)
+++.
T Consensus 145 ~i~~ 148 (373)
T PRK14942 145 MIRK 148 (373)
T ss_pred HHhh
Confidence 9974
No 58
>PF04139 Rad9: Rad9; InterPro: IPR007268 Rad9 is required for transient cell-cycle arrests and transcriptional induction of DNA repair in response to DNA damage.; GO: 0006281 DNA repair; PDB: 3GGR_A 3G65_A 3A1J_A.
Probab=87.67 E-value=7.8 Score=36.11 Aligned_cols=108 Identities=14% Similarity=0.245 Sum_probs=69.9
Q ss_pred cHHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEc-----CCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhcC
Q 038865 9 ALKTFARCLACLSRIGNELVIQASSHQLAFHTLN-----SSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLRT 83 (345)
Q Consensus 9 ~~k~f~rai~~Lskigdel~ie~~~~gL~L~avN-----sSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk~ 83 (345)
+.+.|++.+.-+..=-+|+.|+++++.+.++... ..+.-...+.+.++=|+.|++.++ ..+-+.+|.+-+++.-
T Consensus 136 ~~~~l~~~l~~f~~~~eeitl~~~~~~v~~~s~~~~~~~~~~~l~t~v~i~~~ef~~~~~~~~-~~itF~lKefka~l~~ 214 (252)
T PF04139_consen 136 SPRLLKDLLDHFPSSTEEITLEVTDDKVSFKSYTEEIQDSKQPLSTEVTISTEEFDEYNVQED-TDITFSLKEFKAILSF 214 (252)
T ss_dssp EHHHHHHHHTTS-TT--EEEEEEECTCEEEEEE-----SSS---EEEEEE-GGGSSEEE--TT--EEEEEHHHHHHHHHH
T ss_pred ChHHHHHHHhhcCCChhhEEEEecCCEEEEEeecccccccccceEEEEEEehHhcceEEcCCC-CEEEEEeHHHHHHHHH
Confidence 4678888888887767999999999999998865 558889999999999999999985 7788888888877763
Q ss_pred CCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEE
Q 038865 84 PTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYW 118 (345)
Q Consensus 84 ~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~ 118 (345)
....-..+.+.... ...-+.|.+....++.-.|-
T Consensus 215 ae~~~~~i~~~f~~-pG~Pi~~~~~~~~~~~~~~v 248 (252)
T PF04139_consen 215 AESLSLPISIYFDN-PGRPILFELEQNDHFEAEFV 248 (252)
T ss_dssp HHHTTEEEEEEESS-TTS-EEEEEE--SSEEEEEE
T ss_pred HHhcCCcEEEEECC-CCCcEEEEECCCCcEEEEEE
Confidence 11112356666643 34458888875455554443
No 59
>PRK14944 DNA polymerase III subunit beta; Provisional
Probab=84.36 E-value=46 Score=33.07 Aligned_cols=135 Identities=13% Similarity=0.119 Sum_probs=86.2
Q ss_pred CeeEEecccHHHHHHHHHHHhhcC---------ceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEE
Q 038865 1 MEFAVSGNALKTFARCLACLSRIG---------NELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCS 71 (345)
Q Consensus 1 M~~~l~~~~~k~f~rai~~Lskig---------del~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~ 71 (345)
|+|++.-. .|.++|+..+++. .-+.|++.+++|.|.|-|.--+.-.. ++.. .-++.+ +=++-
T Consensus 1 Mkf~i~k~---~L~~~l~~v~~~v~~k~~~piL~~ili~a~~~~l~l~atD~ei~i~~~--i~~~---~~~v~e-~G~v~ 71 (375)
T PRK14944 1 MYLEINKD---IFLEQLLKIQKILPQKTFFPIFNALKIQTKKNFLILEANNGNIAIKIE--IKDE---SLKIKK-EGKIA 71 (375)
T ss_pred CEEEEeHH---HHHHHHHHHHhHhcCCCCchhhcCEEEEEECCEEEEEEECccEEEEEE--EeCC---cceeec-ceEEE
Confidence 88888764 4567777777664 34899999999999999976333222 2211 012322 24678
Q ss_pred EEchhhHHHhcCCCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCcccccccCC-CCCceEEEEcchhHHH
Q 038865 72 VLLKAVCAVLRTPTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQHLSLDR-RRFPSNFVVRPRDLNR 150 (345)
Q Consensus 72 i~~Ksll~vfk~~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~~~~~-~~~~~~l~i~~~~L~~ 150 (345)
|+.|-+..+.|.+.. +.+.+... +.+.+.+ .|. ...|+|+..+..+ -+.++. ..-...+.+++..|++
T Consensus 72 v~ak~l~~ivk~Lp~--~~I~~~~~--~~~~l~I--~s~---~s~f~L~~~~~~~--fP~~~~~~~~~~~~~i~~~~l~~ 140 (375)
T PRK14944 72 CLGRYFIEIIKKIND--SLIKMTVM--ENNFLVI--KTE---FCEYKLKLMDLCN--FLELDFFFEKKEFFEIKTHFFKK 140 (375)
T ss_pred EehHhHHHHHHhCCC--CcEEEEEc--CCCEEEE--EEC---cEEEEEcCCCHHH--CCCCCcccCcCeEEEECHHHHHH
Confidence 999999999999532 35666552 2345555 454 3468998775322 233433 1223578999999999
Q ss_pred HHhhh
Q 038865 151 LLSNF 155 (345)
Q Consensus 151 ~l~~F 155 (345)
+++.-
T Consensus 141 ~i~~t 145 (375)
T PRK14944 141 IIKEI 145 (375)
T ss_pred HHhhe
Confidence 99753
No 60
>PF02767 DNA_pol3_beta_2: DNA polymerase III beta subunit, central domain; InterPro: IPR022637 This entry describes the central domain of the beta chain of DNA polymerase III. This is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The beta chain is required for initiation of replication from an RNA primer, nucleotide triphosphate (dNTP) residues being added to the 5'-end of the growing DNA chain.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3T0P_B 3P16_A 3RB9_B 2AWA_C 1VPK_A 2AVT_B 2XUR_B 3Q4K_A 3BEP_A 3D1G_A ....
Probab=83.14 E-value=13 Score=30.33 Aligned_cols=73 Identities=11% Similarity=0.198 Sum_probs=56.7
Q ss_pred ceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhcCCCCccceEEEEecCCCCCeEE
Q 038865 25 NELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLRTPTASIDNLTVQLPNSDAPKVQ 104 (345)
Q Consensus 25 del~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk~~~~~vd~~~i~l~d~d~~~L~ 104 (345)
.-++|+..+++|.+-|.|.-|-|+..+.+.....+ ...+-|..|.+..+.|-.....+.++|.+. .+++.
T Consensus 28 ~Gv~~~~~~~~l~~vATDg~RLa~~~~~~~~~~~~-------~~~~iIp~k~l~~l~k~l~~~~~~v~i~~~---~~~i~ 97 (116)
T PF02767_consen 28 NGVLFEIENNKLRLVATDGHRLAVREIELDEENED-------EFSFIIPAKALKELKKLLSDEDEEVEISIS---DNQII 97 (116)
T ss_dssp GEEEEEEETTEEEEEEEESSEEEEEEEEEEEECES-------EEEEEEEHHHHHHHHHHSSTTSSEEEEEEE---SSEEE
T ss_pred eeEEEEEECCEEEEEEeCCceEEEEEEecCccccc-------ceEEEEechHHHHHhhhcccCCceEEEEEc---CCEEE
Confidence 35899999999999999999999999887664222 477889999888888765445678888873 46666
Q ss_pred EEE
Q 038865 105 WTL 107 (345)
Q Consensus 105 ~~l 107 (345)
|+.
T Consensus 98 f~~ 100 (116)
T PF02767_consen 98 FKF 100 (116)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 61
>PF04005 Hus1: Hus1-like protein; InterPro: IPR007150 Hus1, Rad1, and Rad9 are three evolutionarily conserved proteins required for checkpoint control in fission yeast. These proteins are known to form a stable complex in vivo []. Hus1-Rad1-Rad9 complex may form a PCNA-like ring structure, and could function as a sliding clamp during checkpoint control.; PDB: 3A1J_B 3G65_C 3GGR_B.
Probab=70.56 E-value=1e+02 Score=29.47 Aligned_cols=113 Identities=12% Similarity=0.090 Sum_probs=65.3
Q ss_pred EEecccHHHHHHHHHHHhhcCceEEEEEcCCe-EEEEEEcCCccEEEEEEeCccCCcee--------ee-----------
Q 038865 4 AVSGNALKTFARCLACLSRIGNELVIQASSHQ-LAFHTLNSSRSAYQSITFMPNFFDVY--------TV----------- 63 (345)
Q Consensus 4 ~l~~~~~k~f~rai~~Lskigdel~ie~~~~g-L~L~avNsSrSA~~~~~f~~~FF~~Y--------~~----------- 63 (345)
.|.-+.++.+++.++=++++++.+.|.++.+| |.|+.=.. .+-+...|+.----.. .-
T Consensus 152 ~i~LP~l~~l~~~veR~k~~s~~v~i~an~~G~L~L~v~t~--~~~v~t~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (292)
T PF04005_consen 152 SIYLPPLKQLRSIVERMKNLSDYVTISANMNGELRLSVETD--SVSVETEFRGLENPPLDPAELNTVDQLPSEDDSDSDQ 229 (292)
T ss_dssp EEE-S-HHHHHHHHHHHHTT-SEEEEEE-SSS-EEEEEE-S--SEEEEEEE-S------------------------SSS
T ss_pred EEECCCHHHHHHHHHHHhccCceEEEEEECCCcEEEEEEeC--cEEEEEEECCCCCCccccccccccccccccccccccc
Confidence 34455899999999999999999999999964 55544433 5555555643111111 00
Q ss_pred -----cCCEEEEEEEchhhHHHhcCCCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEEee
Q 038865 64 -----SGAQVQCSVLLKAVCAVLRTPTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWIT 120 (345)
Q Consensus 64 -----~~~~~~~~i~~Ksll~vfk~~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~ 120 (345)
.+...++.|.+|.+.++|+....+-+++.+-+. ++..+++.+.-..+..=+|-|+
T Consensus 230 ~~~~~~~~~~sV~Vd~K~~~~~l~~~~~~p~~vi~~I~--~~~~~vl~~~~~~~~~l~yyip 289 (292)
T PF04005_consen 230 QEERDPEEFASVRVDIKDLAKFLKSHQLSPSRVICCIC--HNKALVLHVYLDEDVSLTYYIP 289 (292)
T ss_dssp SS-------EEEEEEHHHHHHHHHH--S--SEEEEEEE--TTTEEEEEEEE-TTEEEEEEEE
T ss_pred cccCCCCcEEEEEEEHHHHHHhhCccccCCCEEEEEEc--cCCeEEEEEEEcCCEEEEEEEe
Confidence 012468899999999999963344467777664 3344555554435566666665
No 62
>PF02768 DNA_pol3_beta_3: DNA polymerase III beta subunit, C-terminal domain; InterPro: IPR022635 This entry describes the C-terminal domain of the beta chain of DNA polymerase III. This is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The beta chain is required for initiation of replication from an RNA primer, nucleotide triphosphate (dNTP) residues being added to the 5'-end of the growing DNA chain.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3P16_A 3RB9_B 2AVT_B 2XUR_B 3Q4K_A 3BEP_A 3D1G_A 1UNN_B 3Q4J_D 2POL_A ....
Probab=69.12 E-value=61 Score=26.31 Aligned_cols=78 Identities=18% Similarity=0.205 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhhc----CceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhcCCCC
Q 038865 11 KTFARCLACLSRI----GNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLRTPTA 86 (345)
Q Consensus 11 k~f~rai~~Lski----gdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk~~~~ 86 (345)
+.|..+|.-.+-+ ..-+.|..+++.|.|++-++.. +-+.-.+. -.|. ++++.+++|.+-|+-+++..
T Consensus 17 ~~L~~al~Rv~~~~~~~~~~v~l~~~~~~l~l~~~~~~~-g~~~e~i~----~~~~--g~~~~i~fN~~yL~d~L~~~-- 87 (121)
T PF02768_consen 17 KELLDALKRVSIISSEKNNPVKLSFSDNQLTLSSQSSEI-GEAEEEIP----IEYE--GEPLEIAFNPKYLLDALKAI-- 87 (121)
T ss_dssp HHHHHHHHHHHHHHTTTTGEEEEEEETTEEEEEEEETTT-EEEEEEEE-----EEE--ES-EEEEEEHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEEECCEEEEEEcCCCC-ceEEEEEe----eeec--CCceEEEECHHHHHHHHhhc--
Confidence 3444454444444 4589999999999999987643 22333332 2333 55799999999999999995
Q ss_pred ccceEEEEecC
Q 038865 87 SIDNLTVQLPN 97 (345)
Q Consensus 87 ~vd~~~i~l~d 97 (345)
.-|.+.|.+.+
T Consensus 88 ~~~~V~l~~~~ 98 (121)
T PF02768_consen 88 DGEEVTLEFSD 98 (121)
T ss_dssp -SSEEEEEESS
T ss_pred CCCEEEEEEcC
Confidence 34677777753
No 63
>COG0592 DnaN DNA polymerase sliding clamp subunit (PCNA homolog) [DNA replication, recombination, and repair]
Probab=66.85 E-value=1.4e+02 Score=29.57 Aligned_cols=135 Identities=15% Similarity=0.187 Sum_probs=85.6
Q ss_pred CeeEEecccHHHHHHHHHHHhhcCc---------eEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEE
Q 038865 1 MEFAVSGNALKTFARCLACLSRIGN---------ELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCS 71 (345)
Q Consensus 1 M~~~l~~~~~k~f~rai~~Lskigd---------el~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~ 71 (345)
|+|.+.-+ .|.++|+-.+++.+ -+.|++.+++|.|++.|.=-+..+.+... +.. ....-
T Consensus 1 mk~~i~r~---~l~~~l~~~~~~v~~r~~~pil~~vli~~~~~~l~~~~td~ei~~~~~i~~~--------v~~-~g~~~ 68 (364)
T COG0592 1 MKFSIERE---NLLKALQLVSRIVESRPTIPILSNVLIEAKENGLTLTGTDLEISLEARIPAE--------VEA-EGEVA 68 (364)
T ss_pred CEEEEEHH---HHHHHHHHHHhhccCCCCChhhhcEEEEEECCeEEEEEecceEEEEEEEEEE--------Eec-ceeEE
Confidence 77777654 45677777777654 59999999999999999777766666555 222 35677
Q ss_pred EEchhhHHHhcCCCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHH
Q 038865 72 VLLKAVCAVLRTPTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRL 151 (345)
Q Consensus 72 i~~Ksll~vfk~~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~ 151 (345)
+..|-+..+.|.. .|...+.... +..++ ..+.+.+ -.|.+...+..+-. .++.......+.++...|+++
T Consensus 69 v~~k~l~dii~~L---~de~~~~~~~-~~~~~-~~i~~~~---s~f~l~~lp~e~Fp--~~~~~~~~~~~~l~~~~Lk~i 138 (364)
T COG0592 69 VPAKKLLDIISKL---PDEAVFLVTE-DGISL-LAVDSGK---SAFVLLTLPAEDFP--EYPVDEEEVEFGLPTELLKKI 138 (364)
T ss_pred EEhHHHHHHHHhC---CCCceEEEEe-cCCce-EEEecCc---eEEEcCCCCHHHCC--CCCCCCcCceEEecHHHHHHH
Confidence 8999999999985 2333222211 23332 3333442 34555444322222 233333336789999999999
Q ss_pred HhhhcC
Q 038865 152 LSNFQS 157 (345)
Q Consensus 152 l~~F~~ 157 (345)
++.-..
T Consensus 139 i~~~~f 144 (364)
T COG0592 139 IKRTKF 144 (364)
T ss_pred Hhheee
Confidence 987654
No 64
>KOG3999 consensus Checkpoint 9-1-1 complex, HUS1 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=60.95 E-value=90 Score=29.80 Aligned_cols=116 Identities=9% Similarity=0.100 Sum_probs=71.2
Q ss_pred eeEEecccHHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeec--------CCEEEEEEE
Q 038865 2 EFAVSGNALKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVS--------GAQVQCSVL 73 (345)
Q Consensus 2 ~~~l~~~~~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~--------~~~~~~~i~ 73 (345)
++.|.-+.+|.+++.++-++.|++-+.++++-+| .|+.-=.+-++-+...|..--=-.-.-+ .....|.|.
T Consensus 157 dl~I~lP~l~~lk~~vdk~Knis~~l~~tan~~G-eLqv~v~~e~~~vtt~Fq~L~~~~~~s~s~~edr~~e~~a~~~ld 235 (284)
T KOG3999|consen 157 DLSIQLPDLNQLKSFVDKMKNISDVLNVTANKSG-ELQVSVSIELIRVTTEFQDLSNPPLKSSSPVEDRSAEARAEVALD 235 (284)
T ss_pred CcceeCCCHHHHHHHHHHhhcccceEEEEEecCc-eEEEEEEEeeEEEEEEhhhccCCCCCCcccccccChhhhhhheeh
Confidence 3567778999999999999999999999999976 3333333444555554442110000001 124678999
Q ss_pred chhhHHHhcCCCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEEee
Q 038865 74 LKAVCAVLRTPTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWIT 120 (345)
Q Consensus 74 ~Ksll~vfk~~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~ 120 (345)
.+.+.++|+.....-.++.+.+. ....+-+.+...+.++=+|-++
T Consensus 236 ~r~~~~~~~s~~~~~~~l~c~i~--~~~~v~~~~~~~~dvvL~y~vp 280 (284)
T KOG3999|consen 236 SRDASSFFVSVQVFSTSLQCNIT--KNDSVHYGIAPQEDVVLQYIVP 280 (284)
T ss_pred hhhHHHHHHHhhcCcceeEEeec--cCceEEEeeccCccEEEEEEec
Confidence 99999999875444455555552 2333445554445555555443
No 65
>KOG1636 consensus DNA polymerase delta processivity factor (proliferating cell nuclear antigen) [Replication, recombination and repair]
Probab=52.50 E-value=2e+02 Score=26.91 Aligned_cols=106 Identities=22% Similarity=0.234 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCc-cCCce------eeecCCEEEEEEEchhhHHHhc
Q 038865 10 LKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMP-NFFDV------YTVSGAQVQCSVLLKAVCAVLR 82 (345)
Q Consensus 10 ~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~-~FF~~------Y~~~~~~~~~~i~~Ksll~vfk 82 (345)
.-.|.|+-.-|+.+||-+.|.|+.+|+.+.+--.=-+ +.+.|++ .--++ .+... ++...+.+|.+..+-|
T Consensus 141 a~EF~ricrdls~f~Dsv~I~~tkegv~F~~~Gdig~--asi~l~~~~~~d~~e~av~iE~~~-pVtltfa~kYln~ftK 217 (260)
T KOG1636|consen 141 AGEFSRICRDLSTFSDSVVISATKEGVKFSAKGDIGT--ASITLSQCTAVDKPEEAVKIEMNE-PVTLTFALKYLNQFTK 217 (260)
T ss_pred HHHHHHHHHHHhhhcCeEEEEEecceeEEEecccccc--eeEEEccCCCCCCccceEEEEecC-cchhhhHHHHHHHhhc
Confidence 3579999999999999999999999999998664444 4455544 11221 12222 4667777888888777
Q ss_pred CCCCccceEEEEecCCCCCeEEEEEEeCC-CeEEEEEeee
Q 038865 83 TPTASIDNLTVQLPNSDAPKVQWTLKCYN-GMKKAYWITC 121 (345)
Q Consensus 83 ~~~~~vd~~~i~l~d~d~~~L~~~l~c~~-gI~Kt~~L~~ 121 (345)
. ..--+++.|++. ++--+.|.+.-.. |-.|-|--|=
T Consensus 218 a-tpLs~rV~lsls--~~~P~~vey~i~~~g~lr~YLAPK 254 (260)
T KOG1636|consen 218 A-TPLSDRVTLSLS--SEVPVVVEYKIEDMGHLRYYLAPK 254 (260)
T ss_pred c-ccccceEEEEec--CCCcEEEEEecccCceEEEEEccc
Confidence 5 234578888884 3344777775444 7677665543
No 66
>PF12139 APS-reductase_C: Adenosine-5'-phosphosulfate reductase beta subunit; InterPro: IPR022738 This domain is found in bacteria and archaea and is typically between 112 to 142 amino acids in length. It is found in association with PF00037 from PFAM, and has a conserved FPIRTT sequence motif. The whole beta subunit has the enzymic properties of 1.8.99.2 from EC. ; PDB: 1JNZ_B 2FJE_D 2FJD_B 1JNR_D 2FJB_B 2FJA_B 3GYX_J.
Probab=35.78 E-value=59 Score=25.37 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=17.5
Q ss_pred CCCeEEEEEEeCCCeEEEEEeeecc
Q 038865 99 DAPKVQWTLKCYNGMKKAYWITCNV 123 (345)
Q Consensus 99 d~~~L~~~l~c~~gI~Kt~~L~~~~ 123 (345)
+...+-|++..+||.+|.|..+.-.
T Consensus 19 ~~~~ImWtikFRnG~~KrFkfPIRT 43 (83)
T PF12139_consen 19 GTESIMWTIKFRNGTVKRFKFPIRT 43 (83)
T ss_dssp -SSEEEEEEE-TTS-EEEEEEE--S
T ss_pred CCCeEEEEEEecCCceeeeecceEc
Confidence 3456999999999999999998653
No 67
>PF01644 Chitin_synth_1: Chitin synthase; InterPro: IPR004834 This region is found commonly in chitin synthases classes I, II and III 2.4.1.16 from EC. Chitin a linear homopolymer of GlcNAc residues, it is an important component of the cell wall of fungi and is synthesised on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases []. ; GO: 0004100 chitin synthase activity, 0006031 chitin biosynthetic process
Probab=26.57 E-value=96 Score=27.41 Aligned_cols=54 Identities=31% Similarity=0.495 Sum_probs=36.9
Q ss_pred EEEEecCCccceeecccCCceEEEEEhHHHHH---------HHhhhccCCCeEEEEeeCCCCc
Q 038865 203 TQLWIDPTEEFVQYTHSGDPVDVTFGVKELKA---------FLSFCEGCEVDIHLFFDKAGEP 256 (345)
Q Consensus 203 Tev~I~~~eEF~~y~~~~~~~~itF~LKefka---------il~fae~~~~~i~i~f~~~G~P 256 (345)
|++.|+...++........|+.+.|||||-.+ |-+||+.+.-.+.+.++.+-+|
T Consensus 89 tq~~i~~~~~~~~~~~~~~PvQ~ifclKe~N~kKinSHrWfFnaf~~~l~P~vcvllDvGT~P 151 (163)
T PF01644_consen 89 TQLSIDSDLKFKGPEKNIVPVQIIFCLKEKNAKKINSHRWFFNAFCRQLQPNVCVLLDVGTKP 151 (163)
T ss_pred ccceecccccccccccCCCCEEEEEEeccccccccchhhHHHHHHHhhcCCcEEEEEecCCCc
Confidence 34555544223222223469999999999653 6899999998999998866555
No 68
>PF15020 CATSPERD: Cation channel sperm-associated protein subunit delta
Probab=26.33 E-value=3.4e+02 Score=29.69 Aligned_cols=115 Identities=16% Similarity=0.233 Sum_probs=73.0
Q ss_pred ceEEEEcchhHHHHHhhhcCCcceEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCC-CCCCce--e--EEEEecCCcc
Q 038865 138 PSNFVVRPRDLNRLLSNFQSSLQEITVIATEPTSLPSDAASEIGGKAVELRSYIDPTK-DNDSTL--H--TQLWIDPTEE 212 (345)
Q Consensus 138 ~~~l~i~~~~L~~~l~~F~~~~eeItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~-~~~~~l--~--Tev~I~~~eE 212 (345)
-..+++++......+-..++..-.|.+.|+.. +++.+++-...-. +.-.++ + =.--|+. +
T Consensus 445 ~s~i~v~~s~~~~sC~~~~p~~~~IsVGCd~~-------------K~I~V~~~~~aC~~g~l~p~~l~~nysyvIek--~ 509 (733)
T PF15020_consen 445 LSTITVDPSNKSISCVDLKPLVFLISVGCDPE-------------KKIVVQNSISACSKGILDPVTLQDNYSYVIEK--S 509 (733)
T ss_pred eEEEEEeHHHcccccccCCCceEEEEEcCCcc-------------ceEEEeccccccccccCChhhhccceEEEEEH--H
Confidence 37889999999999999998778898888763 6788887222211 100011 0 0122222 2
Q ss_pred cee-ec---ccCCceEEEEEhHHHHHHHhhhccCCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEE
Q 038865 213 FVQ-YT---HSGDPVDVTFGVKELKAFLSFCEGCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLA 280 (345)
Q Consensus 213 F~~-y~---~~~~~~~itF~LKefkail~fae~~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLA 280 (345)
|.+ .. ...++..+.|..|++ |-|+.++|+.|=+|++-- |.- ++--..++|+|||-
T Consensus 510 ~y~~~~~~~~~~~dl~V~Y~~~~~----------GCPl~v~~~~~~kPvveL--~~~-~~fvE~V~a~fvl~ 568 (733)
T PF15020_consen 510 FYDPSFQGRKASKDLKVRYDYKKY----------GCPLLVYYDEPFKPVVEL--WDG-DGFVEDVEANFVLW 568 (733)
T ss_pred HcCccccCCCcccceEEEechHhc----------CCCEEEeccCCcceeEEe--eeC-CceEEEeeccEEEE
Confidence 211 00 123467899999988 999999999999999865 432 22123567888875
No 69
>PF00712 DNA_pol3_beta: DNA polymerase III beta subunit, N-terminal domain; InterPro: IPR022634 This entry describes the N-terminal domain of the beta chain of DNA polymerase III. This is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The beta chain is required for initiation of replication from an RNA primer, nucleotide triphosphate (dNTP) residues being added to the 5'-end of the growing DNA chain.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3P16_A 3RB9_B 2AWA_C 1VPK_A 2XUR_B 3Q4K_A 3BEP_A 3D1G_A 1UNN_B 3Q4J_D ....
Probab=22.43 E-value=4.2e+02 Score=21.36 Aligned_cols=84 Identities=13% Similarity=0.200 Sum_probs=51.9
Q ss_pred EEEEEchhhHHHhcC----CC-----CccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCcccccccCCCCCce
Q 038865 69 QCSVLLKAVCAVLRT----PT-----ASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQHLSLDRRRFPS 139 (345)
Q Consensus 69 ~~~i~~Ksll~vfk~----~~-----~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~ 139 (345)
++.++-+.|++.+.. .. .-...+.|+.. .++|+++-... .+.=+++++... . .-+-
T Consensus 2 kf~i~k~~L~~~l~~v~~~i~~k~~~piL~~ili~a~---~~~l~l~atD~-e~~i~~~i~~~~--~---------~~~G 66 (120)
T PF00712_consen 2 KFTINKEELLKALSKVSKVIPSKSTIPILSNILIEAK---DNKLTLTATDL-EISIRTTIPAEI--E---------EEEG 66 (120)
T ss_dssp EEEEEHHHHHHHHHHHHTCSSSSSSSGGGGEEEEEEE---TTEEEEEEE-S-SEEEEEEEETEE--E---------EE-E
T ss_pred EEEEEHHHHHHHHHHHHhhhCCCCChHHhccEEEEEe---CCEEEEEEEcC-eEEEEEEEecee--e---------cCCe
Confidence 455666666665542 11 12456777763 36777775333 244455554432 1 1236
Q ss_pred EEEEcchhHHHHHhhhcCCcceEEEEEcC
Q 038865 140 NFVVRPRDLNRLLSNFQSSLQEITVIATE 168 (345)
Q Consensus 140 ~l~i~~~~L~~~l~~F~~~~eeItl~~t~ 168 (345)
.++++++.|.++++.++.. ++|+|...+
T Consensus 67 ~~~v~ak~l~~ivk~lp~~-~~I~i~~~~ 94 (120)
T PF00712_consen 67 SILVPAKKLFDIVKKLPDD-EEITIEVEE 94 (120)
T ss_dssp EEEEEHHHHHHHHHHSSST-SEEEEEEET
T ss_pred EEEEEhHHHHHHHHhCCCC-CeEEEEEeC
Confidence 8999999999999999974 689998764
Done!