Query 038865
Match_columns 345
No_of_seqs 147 out of 324
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 06:14:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038865.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038865hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g65_A Cell cycle checkpoint c 100.0 2.9E-66 1E-70 494.0 29.9 264 1-288 1-271 (296)
2 3a1j_A Cell cycle checkpoint c 100.0 3.9E-58 1.3E-62 431.9 30.0 258 1-283 1-266 (266)
3 3fds_C DNA polymerase sliding 100.0 1.4E-33 4.9E-38 262.6 29.2 245 3-283 2-249 (249)
4 3lx2_A DNA polymerase sliding 100.0 1.6E-29 5.6E-34 236.2 30.0 249 1-285 1-250 (259)
5 3p91_A Proliferating cell nucl 100.0 2.8E-28 9.5E-33 228.7 30.7 249 3-287 7-261 (265)
6 3fds_D DNA polymerase sliding 100.0 1.2E-27 4.2E-32 221.6 32.5 242 3-283 2-245 (245)
7 1plq_A Proliferating cell nucl 100.0 6E-27 2.1E-31 217.8 32.5 248 3-285 2-256 (258)
8 3a1j_C Cell cycle checkpoint p 100.0 2.6E-27 8.9E-32 221.7 29.9 253 1-283 3-263 (263)
9 1u7b_A PCNA, cyclin, prolifera 100.0 1E-26 3.6E-31 216.4 32.3 250 3-286 2-258 (261)
10 3k4x_A PCNA, proliferating cel 100.0 2.8E-27 9.7E-32 251.9 28.7 255 3-286 8-263 (798)
11 3ifv_A PCNA; processivity fact 100.0 2.8E-27 9.4E-32 219.6 22.8 239 9-286 7-247 (247)
12 2zvv_A PCNA 1, proliferating c 99.9 1.6E-24 5.5E-29 203.9 31.7 248 3-284 22-276 (276)
13 3k4x_A PCNA, proliferating cel 99.9 2.1E-25 7.2E-30 237.5 27.3 255 3-286 542-797 (798)
14 1iz5_A Proliferating cell nucl 99.9 3.9E-24 1.3E-28 197.9 31.1 248 1-284 1-248 (249)
15 2ijx_A DNA polymerase sliding 99.9 6.9E-24 2.4E-28 195.6 29.8 240 7-283 5-244 (244)
16 3aiz_A DNA polymerase sliding 99.9 5.1E-24 1.7E-28 197.0 28.5 246 3-283 2-248 (248)
17 1ud9_A DNA polymerase sliding 99.9 9.6E-24 3.3E-28 194.7 28.0 244 4-284 2-245 (245)
18 3aiz_C DNA polymerase sliding 99.9 1.4E-22 4.7E-27 187.1 28.9 245 1-284 1-246 (246)
19 1rwz_A DNA polymerase sliding 99.9 1.8E-21 6.1E-26 179.7 31.0 240 7-285 5-244 (245)
20 3a1j_B HHUS1, checkpoint prote 99.9 1.3E-21 4.5E-26 184.9 29.6 257 1-281 2-279 (281)
21 1vpk_A DNA polymerase III, bet 98.8 7.4E-07 2.5E-11 86.9 23.4 218 10-283 143-376 (378)
22 3d1g_A DNA polymerase III subu 98.7 8.8E-06 3E-10 79.1 27.1 219 10-283 132-365 (366)
23 2avt_A DNA polymerase III beta 98.6 1.5E-05 5E-10 77.8 26.3 205 24-283 162-376 (378)
24 3pge_A SUMO-modified prolifera 98.4 1E-06 3.6E-11 78.6 10.5 86 177-286 114-199 (200)
25 3t0p_A DNA polymerase III, bet 98.3 0.0001 3.5E-09 71.7 22.4 203 25-284 156-366 (371)
26 3l0w_B Monoubiquitinated proli 98.3 2.2E-06 7.5E-11 74.6 8.6 84 177-284 86-169 (169)
27 3p16_A DNA polymerase III subu 97.9 0.0026 9E-08 62.5 22.8 194 26-262 172-374 (408)
28 1vpk_A DNA polymerase III, bet 97.4 0.056 1.9E-06 52.2 24.4 200 1-252 13-231 (378)
29 3a1j_C Cell cycle checkpoint p 97.0 0.02 6.7E-07 52.7 15.1 113 144-286 11-129 (263)
30 3fds_C DNA polymerase sliding 97.0 0.017 5.8E-07 52.8 14.6 120 141-288 4-124 (249)
31 3p91_A Proliferating cell nucl 96.9 0.038 1.3E-06 50.8 16.1 119 140-286 8-127 (265)
32 3p16_A DNA polymerase III subu 96.3 0.86 3E-05 44.5 25.9 201 1-253 19-237 (408)
33 3t0p_A DNA polymerase III, bet 96.3 0.87 3E-05 43.8 23.5 207 1-260 2-227 (371)
34 3d1g_A DNA polymerase III subu 96.2 0.98 3.3E-05 43.3 21.8 138 1-160 1-149 (366)
35 3lx2_A DNA polymerase sliding 95.8 0.24 8.1E-06 45.2 14.8 105 11-121 139-247 (259)
36 1u7b_A PCNA, cyclin, prolifera 95.6 0.34 1.2E-05 43.8 15.2 94 11-110 142-242 (261)
37 2avt_A DNA polymerase III beta 95.5 1.8 6.2E-05 41.6 24.0 215 1-260 2-234 (378)
38 1plq_A Proliferating cell nucl 95.5 0.43 1.5E-05 43.0 15.2 96 11-112 142-244 (258)
39 1iz5_A Proliferating cell nucl 95.4 0.75 2.6E-05 41.2 16.4 97 10-110 138-234 (249)
40 3fds_D DNA polymerase sliding 94.9 0.46 1.6E-05 42.8 13.6 96 10-112 137-235 (245)
41 2zvv_A PCNA 1, proliferating c 94.6 1 3.5E-05 41.2 15.4 94 11-110 162-262 (276)
42 3aiz_A DNA polymerase sliding 94.4 0.71 2.4E-05 41.3 13.5 114 143-284 7-120 (248)
43 3a1j_A Cell cycle checkpoint c 94.1 0.31 1.1E-05 44.6 10.6 107 9-118 148-261 (266)
44 3ifv_A PCNA; processivity fact 93.9 0.52 1.8E-05 42.5 11.4 94 10-110 135-230 (247)
45 1rwz_A DNA polymerase sliding 93.9 2.3 7.9E-05 37.9 15.7 92 10-108 135-226 (245)
46 3aiz_C DNA polymerase sliding 93.6 1.9 6.4E-05 38.4 14.6 93 10-109 136-231 (246)
47 2ijx_A DNA polymerase sliding 92.9 1.4 4.7E-05 39.3 12.6 92 10-108 136-229 (244)
48 1ud9_A DNA polymerase sliding 92.7 1.8 6E-05 38.6 12.9 92 10-108 136-229 (245)
49 3a1j_B HHUS1, checkpoint prote 92.6 5 0.00017 36.9 16.2 113 2-120 156-278 (281)
50 1dml_A DNA polymerase processi 90.3 12 0.0004 35.0 16.2 259 3-282 33-318 (319)
51 3g65_A Cell cycle checkpoint c 90.1 1.5 5E-05 41.0 9.8 108 9-119 148-262 (296)
52 3pk1_B Apoptosis regulator BAX 49.1 2.9 9.8E-05 26.0 -0.4 14 14-27 10-23 (34)
No 1
>3g65_A Cell cycle checkpoint control protein RAD9A; PCNA, DNA binding clamp, DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein; 2.90A {Homo sapiens}
Probab=100.00 E-value=2.9e-66 Score=494.02 Aligned_cols=264 Identities=28% Similarity=0.491 Sum_probs=235.2
Q ss_pred CeeEEecccHHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecC---CEEEEEEEchhh
Q 038865 1 MEFAVSGNALKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSG---AQVQCSVLLKAV 77 (345)
Q Consensus 1 M~~~l~~~~~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~---~~~~~~i~~Ksl 77 (345)
|+|+|++.++|+|+|+|+||+|||||++|+++++||.|||||+|||||++|.|++.||++|+++. +.++|+|++|+|
T Consensus 1 M~~~i~g~~~K~f~kai~~LskigdEl~~e~~~dgL~LravNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~~c~i~~K~l 80 (296)
T 3g65_A 1 MKCLVTGGNVKVLGKAVHSLSRIGDELYLEPLEDGLSLRTVNSSRSAYACFLFAPLFFQQYQAATPGQDLLRCKILMKSF 80 (296)
T ss_dssp CEEEEETHHHHHHHHHHHHHHTTCSEEEEEEETTEEEEEEECTTSCEEEEEEETTSSCCCCCC-------CCEEEEHHHH
T ss_pred CEEEEecccHHHHHHHHHHHHhhCceEEEEEcCCeEEEEEECCcceEEEEEEeChHHhhheecCCCCCccEEEEEEhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999974 468999999999
Q ss_pred HHHhcCCC---CccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHHHhh
Q 038865 78 CAVLRTPT---ASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRLLSN 154 (345)
Q Consensus 78 l~vfk~~~---~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~ 154 (345)
++|||++. +++|+|.|++ +.+++||+|+|+|++||+|||+|+|++ .+.+++.+|++.|+|.|+++|++|+++|+|
T Consensus 81 l~vfr~~~~~d~~ve~c~i~l-~~~~~rl~i~l~ck~gi~Kt~~l~~~~-~~~l~a~~~~~~~~n~~~i~~~~l~e~l~~ 158 (296)
T 3g65_A 81 LSVFRSLAMLEKTVEKCCISL-NGRSSRLVVQLHCKFGVRKTHNLSFQD-CESLQAVFDPASCPHMLRAPARVLGEAVLP 158 (296)
T ss_dssp HTTTSSTTC----CCEEEEEE-CCC---EEEEEECGGGCEEEEEECCCC-CCCCCCCCCGGGCSCEEEEEHHHHHHHSTT
T ss_pred HHHhccccccccceeEEEEEE-eCCCCEEEEEEEeCCCeEEEEEEEeEe-ccccccccCchhCcEEEEEchHHHHHHHHh
Confidence 99999863 6899999999 568999999999999999999999987 577888999999999999999999999999
Q ss_pred hcCCcceEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCC-CceeEEEEecCCccceeecccCCceEEEEEhHHHH
Q 038865 155 FQSSLQEITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDND-STLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELK 233 (345)
Q Consensus 155 F~~~~eeItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~-~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefk 233 (345)
|+++.|||||.++++ +++.+++|+|+..|.. ++|+|+++|+++ ||++|. +++++++||||||||
T Consensus 159 f~~~~eevtl~~~~~-------------~~v~~~s~~e~~~d~~~~~~~Tel~i~~~-ef~~~~-v~~~~~itf~lKefr 223 (296)
T 3g65_A 159 FSPALAEVTLGIGRG-------------RRVILRSYHEEEADSTAKAMVTEMCLGEE-DFQQLQ-AQEGVAITFCLKEFR 223 (296)
T ss_dssp SCTTCCEEEEEEETT-------------TEEEEEECCC-----CCCCCEEEEEECGG-GCSEEE-CCTTCEEEEEHHHHH
T ss_pred CcCCcceEEEEECCC-------------CeEEEEEeccccccccCceEEEEEEEChh-HheeEe-cCCCcEEEEEHHHHH
Confidence 999999999999842 4899999999887754 899999999996 999997 799999999999999
Q ss_pred HHHhhhccCCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEeccccccc
Q 038865 234 AFLSFCEGCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATMLVSQLQ 288 (345)
Q Consensus 234 ail~fae~~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~~~~~~ 288 (345)
+|++|||+++.+|+++|+.||+||+|+ |. + .+++++|||||+.+++.+
T Consensus 224 ail~~ae~~~~~i~i~f~~pG~Pl~~~--~~--~---~~~~~~fvLaT~~~~~~~ 271 (296)
T 3g65_A 224 GLLSFAESANLNLSIHFDAPGRPAIFT--IK--D---SLLDGHFVLATLSDTDSG 271 (296)
T ss_dssp HHHHHHHHTTCEEEEECCSTTSCEEEE--EE--C---SSCEEEEEECCCCSSSCS
T ss_pred HHHHHHHhcCCeEEEEECCCCCcEEEE--Ee--C---CcEEEEEEEEECCCCCCc
Confidence 999999999999999999999999988 43 3 378999999999997544
No 2
>3a1j_A Cell cycle checkpoint control protein RAD9A; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3ggr_A
Probab=100.00 E-value=3.9e-58 Score=431.93 Aligned_cols=258 Identities=28% Similarity=0.510 Sum_probs=238.6
Q ss_pred CeeEEecccHHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCC---EEEEEEEchhh
Q 038865 1 MEFAVSGNALKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGA---QVQCSVLLKAV 77 (345)
Q Consensus 1 M~~~l~~~~~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~---~~~~~i~~Ksl 77 (345)
|+|+|++.++|+|+|+|+||++|++|++|+|+++||.|||||+|||||+++.|+++||++|+++++ .+.|+|++|++
T Consensus 1 M~~~i~~~~~~~~~k~i~als~l~~e~~~~~~~~gl~l~a~d~S~va~v~l~~~~~fF~~Y~~~~~~~~~~~~gv~~k~l 80 (266)
T 3a1j_A 1 MKCLVTGGNVKVLGKAVHSLSRIGDELYLEPLEDGLSLRTVNSSRSAYACFLFAPLFFQQYQAATPGQDLLRCKILMKSF 80 (266)
T ss_dssp CEEEEETHHHHHHHHHHHHHHTTCSEEEEEEETTEEEEEEECTTSCEEEEEEECGGGSSEEECCCSSSCCCCEEEEHHHH
T ss_pred CEeEEcchhHHHHHHHHHHHHhhCCcEEEEEccCcEEEEEEcCcccEEEEEEEchHhhhheecCCCCCCcEEEEEEhhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999852 58999999999
Q ss_pred HHHhcCCC---CccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHHHhh
Q 038865 78 CAVLRTPT---ASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRLLSN 154 (345)
Q Consensus 78 l~vfk~~~---~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~ 154 (345)
++|||+.. +++|+|+|++ +.++++|+|+|+|++|++|+|+|++++ .+.+++.+|+..|++.|+|+++.|+++++|
T Consensus 81 ~kilk~~~~~d~~vd~~~i~~-~~~~~~l~~~~~~~~~~~k~~~l~l~d-~~~~~~~~~~~~~~~~i~~~s~~~~~~~~~ 158 (266)
T 3a1j_A 81 LSVFRSLAMLEKTVEKCCISL-NGRSSRLVVQLHCKFGVRKTHNLSFQD-CESLQAVFDPASCPHMLRAPARVLGEAVLP 158 (266)
T ss_dssp HHHHCCHHHHHHHEEEEEEEC-CTTCSEEEEEEEEGGGCEEEEEEECEE-CCCCCCCCCGGGCSEEEEEEHHHHHHHHTT
T ss_pred HHHhCCcccccccceEEEEEE-cCCCceEEEEEEccCCceEEEEEEEEc-cccccceechhhCCceEEEChHHHHHHHHh
Confidence 99999942 2368999999 458899999999999999999999986 678899999999999999999999999999
Q ss_pred hcCCcceEEEEEc-CCCCCCCCcccccCCeEEEEEeccCCCCCCC-CceeEEEEecCCccceeecccCCceEEEEEhHHH
Q 038865 155 FQSSLQEITVIAT-EPTSLPSDAASEIGGKAVELRSYIDPTKDND-STLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKEL 232 (345)
Q Consensus 155 F~~~~eeItl~~t-~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~-~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKef 232 (345)
|+..+|+|+|.++ + ++|.+++|.+.+.++. +.++|+++++++ ||++|. +++|+++||+||||
T Consensus 159 ~~~~~d~v~i~~~~~--------------~~v~~~s~~~~~~~~~~~~~~t~~~~~~~-e~~~~~-~~~~~~~tFslkyl 222 (266)
T 3a1j_A 159 FSPALAEVTLGIGRG--------------RRVILRSYHEEEADSTAKAMVTEMCLGEE-DFQQLQ-AQEGVAITFCLKEF 222 (266)
T ss_dssp SCTTCCEEEEEECGG--------------GCEEEEEECCC-CCCSCCCCEEEEEECGG-GCSEEE-CCTTCEEEEEHHHH
T ss_pred CCCChhhEEEEeCCC--------------CEEEEEEcccCccccccccceEEEEECHH-Hhhhee-cCCCCEEEEEHHHH
Confidence 9999999999998 5 4799999999876644 899999999975 999998 78999999999999
Q ss_pred HHHHhhhccCCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEecc
Q 038865 233 KAFLSFCEGCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATML 283 (345)
Q Consensus 233 kail~fae~~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~ 283 (345)
|+|+.||++++++|+++|+.||+|++|+ | ++ ++++++|||||+.
T Consensus 223 ~~~l~f~~~~~~~v~i~~~~~g~Pl~~~--~--~~---~~~~~~f~LATl~ 266 (266)
T 3a1j_A 223 RGLLSFAESANLNLSIHFDAPGRPAIFT--I--KD---SLLDGHFVLATLS 266 (266)
T ss_dssp HHHHHHHHHTTCEEEEEECSTTSCEEEE--E--EC---SSEEEEEEECCCC
T ss_pred HHHHHHHHhcCCcEEEEECCCCccEEEE--E--eC---CcEEEEEEEeecC
Confidence 9999999999999999999999999998 6 44 3789999999984
No 3
>3fds_C DNA polymerase sliding clamp B; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2io4_A* 2nti_D* 2hii_A 2hik_A 2ix2_A* 2izo_C*
Probab=100.00 E-value=1.4e-33 Score=262.58 Aligned_cols=245 Identities=11% Similarity=0.212 Sum_probs=208.2
Q ss_pred eEEecccHHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhc
Q 038865 3 FAVSGNALKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLR 82 (345)
Q Consensus 3 ~~l~~~~~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk 82 (345)
|.+...+.+.|+++++||+++.+|++|+++++||.|+|||+||+|++.+.+++++|++|+|++ ++.++|+++.|.++||
T Consensus 2 f~a~~~~a~~lk~ii~ai~~lv~e~~~~~~~~Gi~l~amD~s~valv~l~l~~~~F~~Y~~d~-~~~~gvnl~~l~kiLk 80 (249)
T 3fds_C 2 VKIVYPNAKDFFSFINSITNVTDSIILNFTEDGIFSRHLTEDKVLMAIMRIPKDVLSEYSIDS-PTSVKLDVSSVKKILS 80 (249)
T ss_dssp CEEEESCHHHHHHHHHHHTTTCSSEEEEECSSEEEEEEECTTSSEEEEEEEEGGGSSEEECSS-CEEEEECHHHHHHHHT
T ss_pred EEEEeCchHHHHHHHHHHHHHhCeEEEEEcCCeEEEEEECCCcEEEEEEEECHHhCeEEECCC-CeEEEEEHHHHHHHHH
Confidence 456678999999999999999999999999999999999999999999999999999999997 5899999999999999
Q ss_pred CCCC-ccceEEEEecCCCCCeEEEEEEeC-CCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHHHhhhcCCcc
Q 038865 83 TPTA-SIDNLTVQLPNSDAPKVQWTLKCY-NGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRLLSNFQSSLQ 160 (345)
Q Consensus 83 ~~~~-~vd~~~i~l~d~d~~~L~~~l~c~-~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~F~~~~e 160 (345)
+ .+ +-|+ |++. .+.++|.|++.++ +|++++|.|++++ .+.+++.+|+..|++.++|+++.|+++++++...+|
T Consensus 81 ~-~~~~~d~--l~~~-~~~~~l~i~~e~~~~~~~~~~~l~l~d-~~~e~~~~p~~e~~~~v~m~s~~f~~~~~dl~~~sd 155 (249)
T 3fds_C 81 K-ASSKKAT--IELT-ETDSGLKIIIRDEKSGAKSTIYIKAEK-GQVEQLTEPKVNLAVNFTTDESVLNVIAADVTLVGE 155 (249)
T ss_dssp T-CCCSCEE--EEEE-ECSSEEEEEEEETTTCCEEEEEEECEE-CCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCS
T ss_pred h-hCCCCCE--EEEe-cCCCEEEEEEEeCCCCEEEEEEEECCC-CccccCCCCCCcceEEEEEEHHHHHHHHHHHHHhCC
Confidence 9 56 6674 4443 3678999999987 5899999999986 677888999999999999999999999999999999
Q ss_pred eEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHHHHHHHh-hh
Q 038865 161 EITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELKAFLS-FC 239 (345)
Q Consensus 161 eItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefkail~-fa 239 (345)
+|+|.++++ .+.|++..+.+. .++++..+ +++..+. +++|++.+|++|||+.+.. .+
T Consensus 156 ~v~i~~~~~--------------~~~f~~~gd~~~-----~~~~~~~~--~~l~~~~-~~~~~~~~fsl~yL~~~~K~a~ 213 (249)
T 3fds_C 156 EMRISTEED--------------KIKIEAGEEGKR-----YVAFLMKD--KPLKELS-IDTSASSSYSAEMFKDAVKGLR 213 (249)
T ss_dssp EEEEEEETT--------------EEEEEEEETTEE-----EEEEEEET--BEESEEE-ESSCCEEEEEHHHHHHHHHTTT
T ss_pred EEEEEEECC--------------EEEEEEEecCcE-----EEEEEcCC--CCcEEEE-cCCceEEEEEHHHHHHHHhhhc
Confidence 999999874 577777665332 33444443 3455554 6889999999999988877 44
Q ss_pred ccCCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEecc
Q 038865 240 EGCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATML 283 (345)
Q Consensus 240 e~~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~ 283 (345)
.++..|+++++. +.||.++ |.+.++ + .++|+|||+.
T Consensus 214 -~ls~~V~i~~~~-~~Pl~l~--y~i~~~---G-~l~f~lAPri 249 (249)
T 3fds_C 214 -GFSAPTMVSFGE-NLPMKID--VEAVSG---G-HMIFWIAPRL 249 (249)
T ss_dssp -TCCSCEEEEECT-TCCEEEE--EECTTS---C-EEEEEECCBC
T ss_pred -ccCCEEEEEecC-CcCEEEE--EEeCCC---c-EEEEEEeccC
Confidence 456789999985 5899999 889764 2 7899999974
No 4
>3lx2_A DNA polymerase sliding clamp 2; PCNA, DNA processivity factor, trimer, toroidal, DNA replica DNA-binding, DNA binding protein; HET: DNA; 2.40A {Thermococcus kodakarensis}
Probab=99.97 E-value=1.6e-29 Score=236.16 Aligned_cols=249 Identities=16% Similarity=0.237 Sum_probs=206.0
Q ss_pred CeeEEecccHHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHH
Q 038865 1 MEFAVSGNALKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAV 80 (345)
Q Consensus 1 M~~~l~~~~~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~v 80 (345)
|.|.+...+.+.|+++++||++|.++++|+++++||.++|+|++|+|++.+.++++.|+.|+|++ ++.++|+++.|.++
T Consensus 1 m~f~a~~~~a~~lk~ii~ai~~i~~~v~~~~~~~gl~~~A~D~~rvalv~~~l~~~~F~~y~~~~-~~~igi~l~~L~ki 79 (259)
T 3lx2_A 1 MTFEIVFDSAREFESLIATLEKFFDEAVFQVNMEGIQMRAIDPSRVVLVDLNLPEMLFSKYSVES-EEAIAFDLKRFLKV 79 (259)
T ss_dssp -CEEEEESCHHHHHHHHHHHHTTCSEEEEEECSSEEEEEEECTTSCEEEEEEEEGGGSSEEEESS-CEEEEEEHHHHHHH
T ss_pred CeEEEEECcHHHHHHHHHHHHHHhceEEEEEecCeEEEEEECCCCEEEEEEEEChHhcEEEEcCC-CEEEEEEHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999998 48899999999999
Q ss_pred hcCCCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHHHhhhcCCcc
Q 038865 81 LRTPTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRLLSNFQSSLQ 160 (345)
Q Consensus 81 fk~~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~F~~~~e 160 (345)
||+ .++.|.|+|. . ++.+.|.|++.+.. +++|.+++++ .+..+..+|+..|++.++++++.|.++++.+....+
T Consensus 80 Lk~-~~~~d~v~i~-~-~~~~~l~~~~e~~~--~~~~~~rLid-~~~~~~~iP~~e~~~~v~~~s~~f~~~i~~~~~~sd 153 (259)
T 3lx2_A 80 LKL-ARSRDTLVLR-K-GGENFLEVGLLGDE--NTWFKLPLID-ANTPEIEIPSLPWTVKAVVLAGALKRAVKAAKLVSD 153 (259)
T ss_dssp HTT-CCTTCEEEEE-E-CSSSEEEEEEESSS--EEEEEEECCC-CCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHCS
T ss_pred HHh-cCCCCEEEEE-E-CCCCEEEEEEecCc--eEEEEEEeec-cCcccCCCCCCceeEEEEEEHHHHHHHHHHHHhcCC
Confidence 999 5688999998 3 25689999998655 7899999986 666777888889999999999999999999999999
Q ss_pred eEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccC-CceEEEEEhHHHHHHHhhh
Q 038865 161 EITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSG-DPVDVTFGVKELKAFLSFC 239 (345)
Q Consensus 161 eItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~-~~~~itF~LKefkail~fa 239 (345)
.|+|.++++ .+.+++..|-+. ...++.-+. +++..+. ++ ++++++|++|||+.++...
T Consensus 154 ~V~i~~~~~--------------~v~~ss~gd~G~-----~~~~l~~~~-~~~~~~~-~~~e~~~~~F~~~YL~~~~Ka~ 212 (259)
T 3lx2_A 154 SIYFMATPE--------------KLTFKAEGNDSE-----VRTVLTMED-PGLLDLE-HKMTKAKSAYGVAYLEDILRSL 212 (259)
T ss_dssp EEEEEECSS--------------CEEEEEECSSCE-----EEEEECTTS-TTEEEEE-ESSSCEEEEEEHHHHHHHHSSS
T ss_pred EEEEEEECC--------------EEEEEEEecCcE-----EEEEEcCCC-CceEEEE-ecCceEEEEEEHHHHHhhhccc
Confidence 999999864 566766543322 222332222 2455555 68 8999999999997666544
Q ss_pred ccCCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEecccc
Q 038865 240 EGCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATMLVS 285 (345)
Q Consensus 240 e~~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~~~ 285 (345)
.. +..|.++|+. ..|+.++ |.++++ + ...|+|||+.++
T Consensus 213 ~~-s~~V~l~~~~-~~Pl~l~--~~i~~~---g-~~~y~laP~~~~ 250 (259)
T 3lx2_A 213 AD-ADEVIIRFGF-DIPLLLK--YMVRDA---G-EVSFLIAPRVEE 250 (259)
T ss_dssp CT-TSEEEEEECT-TSCEEEE--EEETTT---E-EEEEEECCCC--
T ss_pred cC-CCeEEEEeCC-CCCEEEE--EEeCCC---e-EEEEEEccccCC
Confidence 32 3489999984 5899998 888653 2 789999999875
No 5
>3p91_A Proliferating cell nuclear antigen; DNA binding protein, DNA replication, processivity, sliding; 2.40A {Entamoeba histolytica}
Probab=99.97 E-value=2.8e-28 Score=228.66 Aligned_cols=249 Identities=13% Similarity=0.151 Sum_probs=199.6
Q ss_pred eEEecccHHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhc
Q 038865 3 FAVSGNALKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLR 82 (345)
Q Consensus 3 ~~l~~~~~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk 82 (345)
|.....+++.|+++++|++.|.++++|+++++||.++|+|++|+|++.+.++++.|+.|+|++ .+.++++++.|.++||
T Consensus 7 f~a~~~~a~~lk~ii~ai~~i~~~v~~~~~~~gl~~~A~D~~rvalv~~~l~~~~F~~y~~d~-~~~igi~l~~L~kiLk 85 (265)
T 3p91_A 7 FHAKFKEAALFKRVVESLKSTIDKTNFDCSDAGIAVQCMDNSHVSLVSLLIETDAFDEFQCLK-PITLGINLTHLSKILK 85 (265)
T ss_dssp EEEEESCHHHHHHHHHHHHTTCSEEEEEEETTEEEEEEECTTSSSEEEEEECGGGEEEEECSS-CEEEEEEHHHHHHHHT
T ss_pred EEEEECchHHHHHHHHHHHHHhceEEEEEeCCeEEEEEECCCcEEEEEEEEChhhceEEEeCC-CeEEEEEHHHHHHHHh
Confidence 456678899999999999999999999999999999999999999999999999999999997 4889999999999999
Q ss_pred CCCCccceEEEEecCCCCCeEEEEEEeCCC-eEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHHHhhhcCCc-c
Q 038865 83 TPTASIDNLTVQLPNSDAPKVQWTLKCYNG-MKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRLLSNFQSSL-Q 160 (345)
Q Consensus 83 ~~~~~vd~~~i~l~d~d~~~L~~~l~c~~g-I~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~F~~~~-e 160 (345)
+ .++.|.|+|.+. .+.+.|.|++.+.+. .+ +|.+++++ .+..+..+|+..|++.++|+++.|.++++.+.... +
T Consensus 86 ~-~~~~d~v~i~~~-~~~~~l~~~~e~~~~~~i-~~~lrLid-~~~~~~~iP~~e~~~~v~~~s~~f~~~i~~~~~~s~d 161 (265)
T 3p91_A 86 A-LDNDCGLILDVK-KVDDAVLSITSEGTNKTM-KFGLNLVD-IEAESVEIPELQSDAIITLSSAEFLKITKDFSALGDD 161 (265)
T ss_dssp T-SCTTSEEEEEEC-SSSSEEEEEEEC--CCEE-EEEEECCC-CCCCCCCCCCCCCSEEEEEEHHHHHHHHHHHHHHCCS
T ss_pred h-cCCCCEEEEEEc-CCCCeEEEEEEeCCCceE-EEEEEecc-cCcccCCCCCCCccEEEEEEHHHHHHHHHHHHhCCCC
Confidence 9 578899999994 356789999986543 34 99999986 66666788888999999999999999999999888 9
Q ss_pred eEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCC----ccceeecccCCceEEEEEhHHHHHHH
Q 038865 161 EITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPT----EEFVQYTHSGDPVDVTFGVKELKAFL 236 (345)
Q Consensus 161 eItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~----eEF~~y~~~~~~~~itF~LKefkail 236 (345)
.|+|.++++ .+.+++..|-+. .++.+... ++...+. ++++++++|++|||+.++
T Consensus 162 ~V~i~~~~~--------------~v~~ss~gd~G~-------~~~~l~~~~~~~~~~~~~~-~~e~~~~~F~~~YL~~~~ 219 (265)
T 3p91_A 162 SITIGCTKN--------------EVTLTTKGAMCE-------TCMTLSALENVDSNGLQIE-HNKDVTASFALKQISEFA 219 (265)
T ss_dssp EEEEEECSS--------------EEEEEEECSSCE-------EEEEEEC-------CCEEE-ESSCEEEEEEHHHHHHHG
T ss_pred EEEEEEECC--------------EEEEEEEecCce-------EEEEEecCCCCCCceEEEE-cCCcEEEEEEHHHHHHhh
Confidence 999999874 455655433221 22333221 1344444 588999999999997766
Q ss_pred hhhccCCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEecccccc
Q 038865 237 SFCEGCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATMLVSQL 287 (345)
Q Consensus 237 ~fae~~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~~~~~ 287 (345)
.... ++..|.++|+. ..|+.++ |.+ ++ + .++|+|||+.+++-
T Consensus 220 Ka~~-ls~~V~i~~~~-~~Pl~l~--~~i-~~---g-~~~f~lAPri~~~~ 261 (265)
T 3p91_A 220 KSAP-LADNVKLSLSG-QAPLIME--FKG-EA---C-VLKFYLAPKFDEED 261 (265)
T ss_dssp GGGG-GCSEEEEEECS-SSCEEEE--EEE-TT---E-EEEEEECCBC----
T ss_pred cccc-cCCEEEEEeCC-CccEEEE--EEE-CC---E-EEEEEEcCCCCCcc
Confidence 5443 35699999995 5999999 888 43 3 78999999998743
No 6
>3fds_D DNA polymerase sliding clamp C; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B*
Probab=99.97 E-value=1.2e-27 Score=221.61 Aligned_cols=242 Identities=12% Similarity=0.189 Sum_probs=198.0
Q ss_pred eEEecccHHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEE-EEEEchhhHHHh
Q 038865 3 FAVSGNALKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQ-CSVLLKAVCAVL 81 (345)
Q Consensus 3 ~~l~~~~~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~-~~i~~Ksll~vf 81 (345)
|.+...+.+.|+++++|+++|.++++|+++++||.++|+|++|.|++.+.++++.|++|+|+.+ +. ++++++.|.++|
T Consensus 2 ~~a~~~~a~~~k~i~~ai~~i~~~~~~~~~~~gl~~~A~D~~rval~~~~l~~~~F~~y~~~~~-~~i~gi~l~~l~kiL 80 (245)
T 3fds_D 2 MKAKVIDAVSFSYILRTVGDFLSEANFIVTKEGIRVSGIDPSRVVFLDIFLPSSYFEGFEVSQE-KEIIGFKLEDVNDIL 80 (245)
T ss_dssp EEEEESCHHHHHHHHHHHHTTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGEEEEEESSS-CEEEEEEHHHHHHHH
T ss_pred EEEEeCcHHHHHHHHHHHHHHhceEEEEEcCCeEEEEEECCCCEEEEEEEEChHhCEEEEeCCc-cEEEEEEHHHHHHHH
Confidence 5677889999999999999999999999999999999999999999999999999999999985 55 999999999999
Q ss_pred cCCCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHHHhhhcCCcce
Q 038865 82 RTPTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRLLSNFQSSLQE 161 (345)
Q Consensus 82 k~~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~F~~~~ee 161 (345)
|+ .++.|.++|.+ +++.|.|++.+.+ +++|.+++++ .+..+..+|+..|++.++++++.|.+++++.....+.
T Consensus 81 ~~-~~~~d~v~i~~---~~~~l~~~~~~~~--~~~~~~rLid-~~~~~~~iP~~~~~~~v~~~s~~f~~~i~~~~~~s~~ 153 (245)
T 3fds_D 81 KR-VLKDDTLILSS---NESKLTLTFDGEF--TRSFELPLIQ-VESTQPPSVNLEFPFKAQLLTITFADIIDELSDLGEV 153 (245)
T ss_dssp TT-CCTTCEEEEEE---CSSEEEEEEESSS--EEEEEEECCC-CCCCCC----CCCSEEEEEEHHHHHHHHHHHTTTCSE
T ss_pred Hh-cCCCCEEEEEE---eCCEEEEEEecCc--eEEEEEEeec-CCcccCCCCCcceEEEEEEEHHHHHHHHHHHHhcCCE
Confidence 98 56789999998 4568999887654 7899999985 6777777887789999999999999999999999999
Q ss_pred EEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCC-ccceeecccCCceEEEEEhHHHHHHHhhhc
Q 038865 162 ITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPT-EEFVQYTHSGDPVDVTFGVKELKAFLSFCE 240 (345)
Q Consensus 162 Itl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~-eEF~~y~~~~~~~~itF~LKefkail~fae 240 (345)
|+|.++++ .+.+++..|.+. .++.+..+ ++..++. +++++++|++|||+.++....
T Consensus 154 V~i~~~~~--------------~l~~s~~gd~g~-------~~~~l~~~~~~~~~~~--~e~~~~~F~~~YL~~~~ka~~ 210 (245)
T 3fds_D 154 LNIHSKEN--------------KLYFEVIGDLST-------AKVELSTDNGTLLEAS--GADVSSSYGMEYVANTTKMRR 210 (245)
T ss_dssp EEEEEETT--------------EEEEEEECSSCE-------EEEEECTTSSSCSEEE--ECCCEEEEEHHHHHHGGGGGG
T ss_pred EEEEEeCC--------------EEEEEEEecCcE-------EEEEEcCCCCceEEEe--cceEEEEEEHHHHHHHhhhcc
Confidence 99999874 577777543322 33444332 1344444 789999999999966654443
Q ss_pred cCCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEecc
Q 038865 241 GCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATML 283 (345)
Q Consensus 241 ~~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~ 283 (345)
++..|.++|+.+ .|+.++ |.++++ + .++|||||+.
T Consensus 211 -~s~~V~i~~~~~-~Pl~l~--~~i~~~---g-~~~y~laPr~ 245 (245)
T 3fds_D 211 -ASDSMELYFGSQ-IPLKLR--FKLPQE---G-YGDFYIAPRA 245 (245)
T ss_dssp -TCSEEEEEECTT-SCEEEE--EECSTT---C-EEEEEECCCC
T ss_pred -cCCEEEEEecCC-ccEEEE--EEeCCC---e-EEEEEEeecC
Confidence 245999999955 899999 888764 2 7899999974
No 7
>1plq_A Proliferating cell nuclear antigen (PCNA); DNA-binding, nuclear protein, DNA replication, processivity; 2.30A {Saccharomyces cerevisiae} SCOP: d.131.1.2 d.131.1.2 PDB: 1plr_A 2od8_A* 1sxj_F* 3f1w_A 3v60_B 3v61_B 3v62_B* 3gpn_A 3gpm_A 3l0w_A 3l0x_A 3l10_A 3pge_B 3l0x_B
Probab=99.96 E-value=6e-27 Score=217.81 Aligned_cols=248 Identities=16% Similarity=0.230 Sum_probs=205.0
Q ss_pred eEEecccHHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhc
Q 038865 3 FAVSGNALKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLR 82 (345)
Q Consensus 3 ~~l~~~~~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk 82 (345)
|.....+++.|++++++++++.++++|+++++||.++|+|++|.|++++.+++++|+.|+|+++ +.++++++.|.+++|
T Consensus 2 f~a~~~~~~~~~~i~~~i~~i~~~v~~~~~~~gl~~~a~D~~rla~~~~~l~~~~F~~y~~~~~-~~~~i~l~~l~kil~ 80 (258)
T 1plq_A 2 LEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHP-VTLGMDLTSLSKILR 80 (258)
T ss_dssp EEEEESSHHHHHHHHHHHTTTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEECCSSC-EEEEEEHHHHHHHTT
T ss_pred eEEEecchHHHHHHHHHHHHHhceEEEEEcCCceEEEEECCCcEEEEEEEECHHhCcEEEeCCC-eEEEEEHHHHHHHHh
Confidence 4555678899999999999999999999999999999999999999999999999999999884 789999999999999
Q ss_pred CCCCccceEEEEecCCCCCeEEEEEEeC-CCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHHHhhhcCCcce
Q 038865 83 TPTASIDNLTVQLPNSDAPKVQWTLKCY-NGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRLLSNFQSSLQE 161 (345)
Q Consensus 83 ~~~~~vd~~~i~l~d~d~~~L~~~l~c~-~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~F~~~~ee 161 (345)
. .++.|.++|.+. .+.+.|.|.+.+. +|++.+|.+++++ .+..+..+|+..+++.++|+++.|.++++.+....++
T Consensus 81 ~-~~~~d~v~i~~~-~~~~~l~~~~~~~~~~~~~~~~~rlie-~~~~~~~ip~~~~~~~i~~~~~~l~~av~r~~~~s~~ 157 (258)
T 1plq_A 81 C-GNNTDTLTLIAD-NTPDSIILLFEDTKKDRIAEYSLKLMD-IDADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDS 157 (258)
T ss_dssp C-STTTSEEEEEEC-SSCSEEEEEEECSSSSCEEEEEEECBC-CCCCCCCCCCSCCSEEEEEEHHHHHHHHHHHHTTCSE
T ss_pred c-CCCCCEEEEEec-CCCCeEEEEEEcCCCCeEEEEEEEccc-CCcccCCCCCCCccEEEEEeHHHHHHHHHHHHhcCCE
Confidence 8 466889999984 3457999999764 4788999999986 6667778887789999999999999999999998999
Q ss_pred EEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecC------CccceeecccCCceEEEEEhHHHHHH
Q 038865 162 ITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDP------TEEFVQYTHSGDPVDVTFGVKELKAF 235 (345)
Q Consensus 162 Itl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~------~eEF~~y~~~~~~~~itF~LKefkai 235 (345)
|+|.++++ .+.|++..|.+. .++.+.. .+++.+|. .+++++++|++|||+.+
T Consensus 158 v~i~~~~~--------------~l~ls~~~d~g~-------~~~~l~~~~~~~~~~~~~~~~-~ge~~~i~f~~~yL~~~ 215 (258)
T 1plq_A 158 INIMITKE--------------TIKFVADGDIGS-------GSVIIKPFVDMEHPETSIKLE-MDQPVDLTFGAKYLLDI 215 (258)
T ss_dssp EEEEEETT--------------EEEEEEECSSCE-------EEEEECCBCCTTCGGGCBEEE-ESSCEEEEEEHHHHHHH
T ss_pred EEEEEECC--------------EEEEEEEccCce-------EEEEEecCCCCCCCccceEEe-cCCcEEEEEEHHHHHHH
Confidence 99999864 566666543221 2233321 23566665 58999999999999777
Q ss_pred HhhhccCCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEecccc
Q 038865 236 LSFCEGCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATMLVS 285 (345)
Q Consensus 236 l~fae~~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~~~ 285 (345)
+..... +..|.++|+ ++.|++++ |.+++ + ...|+|||+.++
T Consensus 216 lka~~~-s~~V~i~~~-~~~Pl~l~--~~~~~----~-~~~y~l~P~~~~ 256 (258)
T 1plq_A 216 IKGSSL-SDRVGIRLS-SEAPALFQ--FDLKS----G-FLQFFLAPKFND 256 (258)
T ss_dssp GGGGGT-CSEEEEEEC-SSSCEEEE--EEETT----E-EEEEEECCCSSS
T ss_pred hccccC-CceEEEEEC-CCCCEEEE--EEECC----e-EEEEEECCcCCC
Confidence 765543 678999999 55999998 65652 2 789999999875
No 8
>3a1j_C Cell cycle checkpoint protein RAD1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_B 3ggr_C
Probab=99.96 E-value=2.6e-27 Score=221.74 Aligned_cols=253 Identities=8% Similarity=0.091 Sum_probs=199.6
Q ss_pred CeeEEecccHHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHH
Q 038865 1 MEFAVSGNALKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAV 80 (345)
Q Consensus 1 M~~~l~~~~~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~v 80 (345)
|-|+....+++.|+++++|| ++.++++|+++++||.++++| ||++++++.++++.|++|+|+++...++|+++.|.++
T Consensus 3 ~~f~a~~~~a~~l~~il~ai-~l~~ea~~~~s~~Gi~l~a~D-s~v~~v~l~l~~~~F~~Y~~~~~~~~~gi~l~~l~k~ 80 (263)
T 3a1j_C 3 YSLVASLDNVRNLSTILKAI-HFREHATCFATKNGIKVTVEN-AKCVQANAFIQAGIFQEFKVQEESVTFRINLTVLLDC 80 (263)
T ss_dssp CSEEEEESCTHHHHHHHHTT-CSSSEEEEEEETTEEEEEEEE-TTTEEEEEEEEGGGSSEEEESSSCEEEEEEHHHHHHH
T ss_pred eEEEEEeCCHHHHHHHHhhe-ecCcEEEEEEcCCeEEEEEEe-CCEEEEEEEECHHHCceEEEcCCCcEEEEEhHHHHHH
Confidence 55778889999999999999 999999999999999999999 9999999999999999999998558999999999999
Q ss_pred hcCCCCcc----c--eEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHHHhh
Q 038865 81 LRTPTASI----D--NLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRLLSN 154 (345)
Q Consensus 81 fk~~~~~v----d--~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~ 154 (345)
||.. ++- | .|.|+.. ++.+.|.+.|.. .|++++|.|+.++..+.....++.+..++++.|++..|++++++
T Consensus 81 L~~~-~~~~~~~d~~~l~i~~~-~~~~~l~l~~e~-~~~~~~~~l~~~~~~~~~d~~f~~~~~~~~v~m~s~~l~~~~~d 157 (263)
T 3a1j_C 81 LSIF-GSSPMPGTLTALRMCYQ-GYGYPLMLFLEE-GGVVTVCKINTQEPEETLDFDFCSTNVINKIILQSEGLREAFSE 157 (263)
T ss_dssp HTTT-CSCCCTTCCCEEEEEEC-STTCCEEEEEEE-TTEEEEEEECCBCCCCCCCCCCCTTTEEEEEEEEGGGGHHHHHT
T ss_pred HHHh-cCCcCCCCceEEEEEEC-CCCCcEEEEEEe-CCeEEEEEEEEEcCCcccCcccCcccceEEEEEehHHHHHHHHH
Confidence 9984 444 6 5555563 357789999875 78999999998864332334455555666999999999999999
Q ss_pred hcCCcceEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCC-ccceeecccCCceEEEEEhHHHH
Q 038865 155 FQSSLQEITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPT-EEFVQYTHSGDPVDVTFGVKELK 233 (345)
Q Consensus 155 F~~~~eeItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~-eEF~~y~~~~~~~~itF~LKefk 233 (345)
+....+.|+|.++++. ..+.|++..+-+. .++.+..+ +++..+. +++++..+|+++||+
T Consensus 158 l~~~~d~v~i~~~~~~------------p~~~~~~~Gd~g~-------~~i~~~~~~~~~~~~~-~~~~~~~~y~l~yL~ 217 (263)
T 3a1j_C 158 LDMTSEVLQITMSPDK------------PYFRLSTFGNAGS-------SHLDYPKDSDLMEAFH-CNQTQVNRYKISLLK 217 (263)
T ss_dssp SCTTSSEEEEEECSSS------------SSEEEEEEETTEE-------EEEEECTTCSSEEEEE-ECSCEEEEEEHHHHT
T ss_pred HhccCCeEEEEEEcCC------------CEEEEEEEcCCcc-------EEEEEcCCCCeEEEEE-eCChhhcEEeHHHHH
Confidence 9999999999998751 1355555433221 23333332 2455555 678999999999998
Q ss_pred HHHhhhccCCCeEEEEeeCCCCcEEEeeeccCCC-CCCCceEEEEEEEecc
Q 038865 234 AFLSFCEGCEVDIHLFFDKAGEPILMAPKFGLDD-GSGSNFDATLVLATML 283 (345)
Q Consensus 234 ail~fae~~~~~i~i~f~~~G~Pl~~~~~f~l~d-~~~~~~~a~fvLAT~~ 283 (345)
.+..-.. ++..+.++++ .+.||.++ |.+.+ ++ ....++|+|||+.
T Consensus 218 ~~~ka~~-~s~~v~i~~~-~~~pL~l~--~~i~~~~g-~~~~v~f~laP~~ 263 (263)
T 3a1j_C 218 PSTKALV-LSCKVSIRTD-NRGFLSLQ--YMIRNEDG-QICFVEYYCCPDE 263 (263)
T ss_dssp THHHHHH-HCSEEEEEEE-TTCCEEEE--EEEECTTS-CEEEEEEEECCCC
T ss_pred HHHhhhh-hcCEEEEEEC-CCeeEEEE--EEEecCCC-CEEEEEEEEEECC
Confidence 8766553 4679999999 56899999 88875 32 2334899999973
No 9
>1u7b_A PCNA, cyclin, proliferating cell nuclear antigen; sliding clamp, DNA processing, FEN1, PIP- BOX, replication; 1.88A {Homo sapiens} SCOP: d.131.1.2 d.131.1.2 PDB: 1u76_A 1axc_A 1ul1_A 1vyj_A 1vym_A 1w60_A 2zvk_A* 2zvl_A* 2zvm_A* 3p87_A 3vkx_A*
Probab=99.96 E-value=1e-26 Score=216.40 Aligned_cols=250 Identities=15% Similarity=0.244 Sum_probs=204.4
Q ss_pred eEEecccHHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhc
Q 038865 3 FAVSGNALKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLR 82 (345)
Q Consensus 3 ~~l~~~~~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk 82 (345)
|.....+++.|++++++++++.++++|+++++||.++|+|++|.|++++.+.+++|+.|+|++ ++.++++++.|.+++|
T Consensus 2 f~a~~~~~~~~k~i~~~i~~il~~v~~~~~~~gl~~~a~D~~rla~~~~~l~~~~f~~y~~~~-~i~~~i~l~~l~kil~ 80 (261)
T 1u7b_A 2 FEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDR-NLAMGVNLTSMSKILK 80 (261)
T ss_dssp EEEEESCTHHHHHHHHHHHTTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEEESS-CEEEEEEHHHHHHHHT
T ss_pred eEEEecchHHHHHHHHHHHHHhcEEEEEEeCCceEEEEECCCCEEEEEEEECHHhCeEEEeCC-CeEEEEEHHHHHHHHh
Confidence 455567899999999999999999999999999999999999999999999999999999987 4789999999999999
Q ss_pred CCCCccceEEEEecCCCCCeEEEEEEeC-CCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHHHhhhcCCcce
Q 038865 83 TPTASIDNLTVQLPNSDAPKVQWTLKCY-NGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRLLSNFQSSLQE 161 (345)
Q Consensus 83 ~~~~~vd~~~i~l~d~d~~~L~~~l~c~-~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~F~~~~ee 161 (345)
. .++.|.++|.+. .+.+.|.|++.+. +|++.+|.+++++ .+..++.+|+..+++.++|+++.|.++++.+....++
T Consensus 81 ~-~~~~d~v~i~~~-~~~~~l~~~~~~~~~~~~~~~~~rlie-~~~~~~~iP~~~~~~~i~~~~~~l~~ai~r~~~~s~~ 157 (261)
T 1u7b_A 81 C-AGNEDIITLRAE-DNADTLALVFEAPNQEKVSDYEMKLMD-LDVEQLGIPEQEYSCVVKMPSGEFARICRDLSHIGDA 157 (261)
T ss_dssp T-SCTTCEEEEEEC-TTCSEEEEEEECTTSSCEEEEEEECCC-CCCCCCBCCCCCCSEEEEEEHHHHHHHHHHHHTTCSE
T ss_pred c-CCCCCEEEEEec-CCCCEEEEEEEcCCCCeEEEEEEECcc-CCcccCCCCCCcccEEEEEEHHHHHHHHHHHHhcCCE
Confidence 8 456889999984 3577899999764 4789999999986 6767777887789999999999999999999999999
Q ss_pred EEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecC------CccceeecccCCceEEEEEhHHHHHH
Q 038865 162 ITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDP------TEEFVQYTHSGDPVDVTFGVKELKAF 235 (345)
Q Consensus 162 Itl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~------~eEF~~y~~~~~~~~itF~LKefkai 235 (345)
|+|.++++ .+.|++..|.+. .++.+.. .+++.+|. .+++++++|++|||+.+
T Consensus 158 v~i~~~~~--------------~l~ls~~~d~g~-------~~~~~~~~~~~~~~~~~~~~~-~~e~~~i~f~~~yL~~~ 215 (261)
T 1u7b_A 158 VVISCAKD--------------GVKFSASGELGN-------GNIKLSQTSNVDKEEEAVTIE-MNEPVQLTFALRYLNFF 215 (261)
T ss_dssp EEEEEETT--------------EEEEEEEETTEE-------EEEEECCCC----CCSCCEEE-ESSCEEEEEEHHHHHHH
T ss_pred EEEEEECC--------------EEEEEEEecCce-------EEEEEecCCCCCCCccceEEe-cCCcEEEEEeHHHHHHH
Confidence 99999864 466666432221 1223321 23566665 68999999999999877
Q ss_pred HhhhccCCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEeccccc
Q 038865 236 LSFCEGCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATMLVSQ 286 (345)
Q Consensus 236 l~fae~~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~~~~ 286 (345)
+.-... +..|.++|+. +.|++++ |.++++ + ...|+|||+.+++
T Consensus 216 lka~~~-s~~V~i~~~~-~~P~~l~--~~~~~~---~-~~~y~l~P~i~~e 258 (261)
T 1u7b_A 216 TKATPL-SSTVTLSMSA-DVPLVVE--YKIADM---G-HLKYYLAPKIEDE 258 (261)
T ss_dssp GGGGGG-CSEEEEEECT-TSCEEEE--EEETTT---E-EEEEEECCBC---
T ss_pred hCcccC-CCeEEEEECC-CCCEEEE--EEeCCC---c-EEEEEECCcCccc
Confidence 766543 6789999996 7999998 666532 3 7899999999854
No 10
>3k4x_A PCNA, proliferating cell nuclear antigen; DNA replication, DNA-binding; HET: DNA; 2.98A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.8e-27 Score=251.89 Aligned_cols=255 Identities=16% Similarity=0.246 Sum_probs=209.4
Q ss_pred eEEecccHHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhc
Q 038865 3 FAVSGNALKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLR 82 (345)
Q Consensus 3 ~~l~~~~~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk 82 (345)
|.....+.+.|++++.|++++.+|++|+++++||.++|||+||++++.+.++++.|++|+|++ ++.++|++..|.++||
T Consensus 8 f~a~~~~a~~~k~ii~ai~~lv~e~~~~~t~~Gi~l~amD~s~v~lv~l~l~~~~F~~Y~~d~-~~~~Gvnl~~l~kiLk 86 (798)
T 3k4x_A 8 LEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDH-PVTLGMDLTSLSKILR 86 (798)
T ss_dssp CEEEESCHHHHHHHHHHHTTTCSEEEEEEETTEEEEEEECSSSCCEEEEEEEGGGSSEEECSS-CEEEEEEHHHHHHHHS
T ss_pred EEEEecchHHHHHHHHHHHHHhceEEEEEeCCeEEEEEECCCcEEEEEEEEChhhCeEEecCC-CeEEEEEHHHHHHHHh
Confidence 456678899999999999999999999999999999999999999999999999999999998 4999999999999999
Q ss_pred CCCCccceEEEEecCCCCCeEEEEEEeCC-CeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHHHhhhcCCcce
Q 038865 83 TPTASIDNLTVQLPNSDAPKVQWTLKCYN-GMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRLLSNFQSSLQE 161 (345)
Q Consensus 83 ~~~~~vd~~~i~l~d~d~~~L~~~l~c~~-gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~F~~~~ee 161 (345)
+ .++.|.|+|++. .+.++|.+.+...+ |++++|.|++++ .+.+++.+|+..|++.+.|++..|++++++.....+.
T Consensus 87 ~-~~~~d~l~l~~~-~~~~~l~i~~e~~~~~~~~~~~l~l~d-~~~e~l~ip~~e~~~~v~m~s~~f~~~~~dl~~~sd~ 163 (798)
T 3k4x_A 87 C-GNNTDTLTLIAD-NTPDSIILLFEDTKKDRIAEYSLKLMD-IDADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDS 163 (798)
T ss_dssp S-SCTTSCEEEECC-SSCSEEEEEEECSSSSEEEEEEEECBC-CCCCCCCCCCSCCSEEEEEEHHHHHHHHHHHTTTCSE
T ss_pred h-cCCCCEEEEEEc-CCCCeEEEEEEeCCCceEEEEEEEeec-cCcccCCCCCCceeEEEEEEHHHHHHHHHHHHhhCCE
Confidence 9 688999999984 46778999997654 789999999985 6778899999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHHHHHHHhhhcc
Q 038865 162 ITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELKAFLSFCEG 241 (345)
Q Consensus 162 Itl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefkail~fae~ 241 (345)
|+|.++++...|+. .|+.|...+.++......++ ++...+. +++|+..+|+++||+.+...+ .
T Consensus 164 v~i~~~~~~~~~s~-~Gd~g~~~v~~~~~~~~~~~--------------~~~~~i~-~~e~~~~~ysl~yL~~~~Ka~-~ 226 (798)
T 3k4x_A 164 INIMITKETIKFVA-DGDIGSGSVIIKPFVDMEHP--------------ETSIKLE-MDQPVDLTFGAKYLLDIIKGS-S 226 (798)
T ss_dssp EEEEEETTEEEEEE-ECSSEEEEEEECCBCCSSCG--------------GGCBEEE-ESSCEEEEEEHHHHHHHGGGG-G
T ss_pred EEEEEECCEEEEEE-EecCcEEEEEEcCCCCCCCc--------------cceEEEE-eCCceeEEEEHHHHHHhhccc-c
Confidence 99999987555553 45555555555443211110 1233333 578999999999997666433 3
Q ss_pred CCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEeccccc
Q 038865 242 CEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATMLVSQ 286 (345)
Q Consensus 242 ~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~~~~ 286 (345)
++-.|+++|+ .+.||.++ |.+ ++ + .++|+|||+.+++
T Consensus 227 ls~~V~l~~~-~~~PL~l~--y~i-~~---G-~l~f~lAPri~~~ 263 (798)
T 3k4x_A 227 LSDRVGIRLS-SEAPALFQ--FDL-KS---G-FLQFFLAPKFNDE 263 (798)
T ss_dssp TCSEEEEEEC-SSSCEEEE--EEE-TT---E-EEEEEECCC----
T ss_pred cCCEEEEEeC-CCCcEEEE--EEE-CC---e-EEEEEEccCCCCc
Confidence 4568999999 56999999 888 43 3 7899999999863
No 11
>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication; 2.00A {Haloferax volcanii} PDB: 3hi8_A
Probab=99.96 E-value=2.8e-27 Score=219.59 Aligned_cols=239 Identities=16% Similarity=0.251 Sum_probs=177.8
Q ss_pred cHHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhcCCCCcc
Q 038865 9 ALKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLRTPTASI 88 (345)
Q Consensus 9 ~~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk~~~~~v 88 (345)
+++.|+++++|+++|.++++|+++++||.++|+|++|+|++.+.++++.|++|+|++. + ++++++.|.++||+ .++.
T Consensus 7 ~a~~~k~i~~ai~~i~~~v~~~~~~~gl~~~A~D~~rvalv~~~l~~~~F~~y~~~~~-v-~g~~l~~l~kiL~~-~~~~ 83 (247)
T 3ifv_A 7 SAATLRDALDSVSVLVDECKIRLNEESLSIRAVDPANVGMVDLTLDAAAFESYEAHGG-V-IGVNLSRLEEVAGM-AGAG 83 (247)
T ss_dssp CHHHHHHHHHHHHTTCSSEEEC---CEEEEEEECTTSSEEEEEEEEGGGSSBC------C-EEECHHHHHHHHTT-C---
T ss_pred cHHHHHHHHHHHHHHhcEEEEEEeCCeEEEEEECCccEEEEEEEEchhcCeEEEccCc-E-EEEEHHHHHHHHhc-CCCC
Confidence 7999999999999999999999999999999999999999999999999999999874 7 99999999999998 5678
Q ss_pred ceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCccc--ccccCCCCCceEEEEcchhHHHHHhhhcCCcceEEEEE
Q 038865 89 DNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQ--HLSLDRRRFPSNFVVRPRDLNRLLSNFQSSLQEITVIA 166 (345)
Q Consensus 89 d~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~--~~~~~~~~~~~~l~i~~~~L~~~l~~F~~~~eeItl~~ 166 (345)
|.++|.+. .+.+.|.|++.+ ++|.+++++ .+.. +..+|+..|++.++++++.|.++++++....+.|+|.+
T Consensus 84 d~v~i~~~-~~~~~l~~~~~~-----~~~~~rLid-~~~~~~~~~iP~~e~~~~v~~~s~~f~~~i~~~~~~sd~V~i~~ 156 (247)
T 3ifv_A 84 DLIHLTLD-EETRKLNIRIDG-----LSYTLALID-PDSIRQEPDIPDLDLAANIVLEGTHLDRGIKAADMVSDHIRLRV 156 (247)
T ss_dssp -CEEECC--------EEEETT-----EEEEC---C-TTC----CCCCCCCCSEEEEEEHHHHHHHHHHHHHHCSEEEEEE
T ss_pred CEEEEEEc-CCCCEEEEEEeC-----cEEEEEeec-ccccccCCCCCCCCceEEEEEEHHHHHHHHHHHHhhCCEEEEEE
Confidence 89999884 345678888743 489999985 4443 36788789999999999999999999999899999999
Q ss_pred cCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHHHHHHHhhhccCCCeE
Q 038865 167 TEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELKAFLSFCEGCEVDI 246 (345)
Q Consensus 167 t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefkail~fae~~~~~i 246 (345)
+++ +..+.+.+..|-+. +++.+..+ ++.++. +++++++|++|||+.++.... ++..|
T Consensus 157 ~~~------------~~~~~~s~~gd~g~-------~~~~l~~~-~~~~~~--~e~~~~~F~~~YL~~~~Ka~~-~s~~V 213 (247)
T 3ifv_A 157 DGA------------EETFHIEAEGDTDD-------VDLSLPPA-DLISIE--AGAADSLFSLDYLKDMNKAIP-TDAEV 213 (247)
T ss_dssp ETT------------TTEEEEEEECSSCE-------EEEEECGG-GCSEEE--ECCCEEEEEHHHHHHHHHHSC-TTCEE
T ss_pred ECC------------CCEEEEEEEecceE-------EEEEECCC-ceEEEe--cCeEEEEEeHHHHHHhhhhcc-CCCEE
Confidence 852 13677777643322 56677654 566664 789999999999977776554 25699
Q ss_pred EEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEeccccc
Q 038865 247 HLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATMLVSQ 286 (345)
Q Consensus 247 ~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~~~~ 286 (345)
.++|+.+ .|+.++ |.+++| .+ .++|+|||+.+++
T Consensus 214 ~i~~~~~-~Pl~l~--~~i~~~--~g-~~~~~lAPri~~~ 247 (247)
T 3ifv_A 214 TVELGEE-FPVKLH--YQIAEG--MG-TITYMLAPRIQSD 247 (247)
T ss_dssp EEEECBS-SCEEEE--EEEGGG--TE-EEEEEECCC----
T ss_pred EEEecCC-ccEEEE--EEEcCC--cE-EEEEEEeecccCC
Confidence 9999955 899999 888632 13 7899999998763
No 12
>2zvv_A PCNA 1, proliferating cellular nuclear antigen 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 2zvw_A
Probab=99.94 E-value=1.6e-24 Score=203.90 Aligned_cols=248 Identities=13% Similarity=0.217 Sum_probs=202.6
Q ss_pred eEEecccHHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhc
Q 038865 3 FAVSGNALKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLR 82 (345)
Q Consensus 3 ~~l~~~~~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk 82 (345)
|.....+.+.|++++++++.+.++++|+++++||.++|+|++|.|++.+.+.+++|+.|+|+++ +.++++++.|.+++|
T Consensus 22 f~a~~~~~~~lk~ii~~~~~il~~v~~~~~~~gl~~vAtD~~rla~~~~~l~~~~f~~y~~~~~-i~~~i~l~~l~kilk 100 (276)
T 2zvv_A 22 LELRLVQGSLLKKVLESIKDLVNDANFDCSSTGFSLQAMDSSHVALVSLLLRSEGFEHYRCDRN-LSMGMNLGNMSKMLK 100 (276)
T ss_dssp EEEEESCTHHHHHHHHHHTTTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEEESSC-EEEEEEHHHHHHHHH
T ss_pred EEEEeCChHHHHHHHHHHHHHhceEEEEEECCeEEEEEECCCCEEEEEEEEChhhCcEEEcCCC-EEEEEEHHHHHHHHh
Confidence 5556678889999999999999999999999999999999999999999999999999999884 789999999999999
Q ss_pred CCCCccceEEEEecCCCCCeEEEEEEe-CCCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHHHhhhcCCcce
Q 038865 83 TPTASIDNLTVQLPNSDAPKVQWTLKC-YNGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRLLSNFQSSLQE 161 (345)
Q Consensus 83 ~~~~~vd~~~i~l~d~d~~~L~~~l~c-~~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~F~~~~ee 161 (345)
. .++.|.++|.+. .+.+.|.|++.. ..+++.+|.+++++ .+.....+|+..+++.++++++.|.++++.+....++
T Consensus 101 ~-~~~~d~v~i~~~-~~~~~l~~~~~~~~~~~~~~~~~rLid-~~~p~~~iP~~~~~~~i~~~~~~l~~av~r~~~~sd~ 177 (276)
T 2zvv_A 101 C-AGNDDIITIKAD-DGGDTVTFMFESPTQDKIADFEMKLMD-IDSEHLGIPDAEYHSIVRMPSNEFSRICKDLSSIGDT 177 (276)
T ss_dssp T-SCTTCEEEEEEC-TTCSEEEEEEECTTSSCEEEEEEECCC-EECCCCCCCCCCCSEEEEEEHHHHHHHHHHHHTTCSE
T ss_pred h-CCCCCeEEEEEc-CCCCeEEEEEEeCCCceEEEEEEEccc-CCcccCCCCCCcccEEEEEEHHHHHHHHHHHHhhCCE
Confidence 8 456788999984 346789999975 34788999999986 5666667887689999999999999999999998899
Q ss_pred EEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecC------CccceeecccCCceEEEEEhHHHHHH
Q 038865 162 ITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDP------TEEFVQYTHSGDPVDVTFGVKELKAF 235 (345)
Q Consensus 162 Itl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~------~eEF~~y~~~~~~~~itF~LKefkai 235 (345)
|+|.++++ .+.|++..|.+. .+..+.. .+++.+|. .+++++++|++|||+.+
T Consensus 178 V~i~~~~~--------------~l~lsa~gd~g~-------~~~~l~~~~~~~~~~~~~~~~-~ge~~~i~fn~~YL~d~ 235 (276)
T 2zvv_A 178 VVISVTKE--------------GVKFSTAGDIGT-------ANIVLRQNTTVDKPEDAIVIE-MKEPVSLSFALRYMNSF 235 (276)
T ss_dssp EEEEEETT--------------EEEEEEEETTEE-------EEEEECCCSSCCSGGGCCEEE-ESSCEEEEEEHHHHHHH
T ss_pred EEEEEeCC--------------EEEEEEEeeccE-------EEEEEccCCCCCCccccEEEe-cCCcEEEEEEHHHHHHH
Confidence 99999864 466666533221 2233321 12455665 58899999999999777
Q ss_pred HhhhccCCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEeccc
Q 038865 236 LSFCEGCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATMLV 284 (345)
Q Consensus 236 l~fae~~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~~ 284 (345)
+.-.+. +..|.+.|+ ++.|++++ |.++++ + ...|+|||+.+
T Consensus 236 lka~~l-s~~V~i~l~-~~~Pl~l~--~~~~~~---g-~~~y~laP~i~ 276 (276)
T 2zvv_A 236 TKATPL-SDTVTISLS-SELPVVVE--YKVAEM---G-YIRYYLAPKIE 276 (276)
T ss_dssp GGGGGG-CSEEEEEEC-TTSCEEEE--EEETTT---E-EEEEEECCBC-
T ss_pred hccccC-CCEEEEEEc-CCceEEEE--EEeCCC---c-EEEEEEccccC
Confidence 766653 668999999 55999998 666432 2 78999999863
No 13
>3k4x_A PCNA, proliferating cell nuclear antigen; DNA replication, DNA-binding; HET: DNA; 2.98A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.1e-25 Score=237.51 Aligned_cols=255 Identities=16% Similarity=0.247 Sum_probs=208.7
Q ss_pred eEEecccHHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhc
Q 038865 3 FAVSGNALKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLR 82 (345)
Q Consensus 3 ~~l~~~~~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk 82 (345)
|...-.+.+.|+++|.|++.|.++++|+++++||.++|+|++|++++.+.+.++.|+.|+|+++ +.++++++.|.++||
T Consensus 542 fea~l~~~~~lk~ii~ai~~iv~~~~~~~~~~Gi~~~a~D~s~valv~~~L~~~~F~~y~cd~~-i~iG~nL~~L~kiLk 620 (798)
T 3k4x_A 542 LEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHP-VTLGMDLTSLSKILR 620 (798)
T ss_dssp CEEEESSHHHHHHHHHTTTTTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGEEEEECSSC-EEEEEEHHHHHHHHH
T ss_pred EEEEcCchHHHHHHHHHHHHHhCcEEEEEECCeEEEEEECCCcEEEEEEEeccccCceEEcCCC-eEEEEEHHHHHHHHh
Confidence 4555578999999999999999999999999999999999999999999999999999999985 888999999999999
Q ss_pred CCCCccceEEEEecCCCCCeEEEEEEeC-CCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHHHhhhcCCcce
Q 038865 83 TPTASIDNLTVQLPNSDAPKVQWTLKCY-NGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRLLSNFQSSLQE 161 (345)
Q Consensus 83 ~~~~~vd~~~i~l~d~d~~~L~~~l~c~-~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~F~~~~ee 161 (345)
+ .++.|.++|... .+.+.|.|++... .|.+..|.+++++ ++..+..+|+..|++.++|++..|+++++++...++.
T Consensus 621 ~-~~~~d~v~l~~~-d~~~~l~~~~e~~~~~~~~~f~lkL~d-~~~~~~~iP~~e~~~~i~m~s~~f~~~~~~l~~~sd~ 697 (798)
T 3k4x_A 621 C-GNNTDTLTLIAD-NTPDSIILLFEDTKKDRIAEYSLKLMD-IDADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDS 697 (798)
T ss_dssp H-SCSSSEEEEECC-SSCSEEEEEEECSSCCCEEEEEEECCC-CCCCCCCCCCCCCSEEEEEEHHHHHHHHHHHHTTCSE
T ss_pred c-cCCCCEEEEEEc-CCCCeEEEEEecCCCceEEEEEEEeec-CCCCCCCCCCccceEEEEEEHHHHHHHHHHHHhcCCE
Confidence 9 678899999984 3667799999754 4789999999985 7777888998899999999999999999999999999
Q ss_pred EEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHHHHHHHhhhcc
Q 038865 162 ITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELKAFLSFCEG 241 (345)
Q Consensus 162 Itl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefkail~fae~ 241 (345)
|+|.++++.+.|+. .||+|...+.++......++ ++...+. ++++++++|++|||+.++... .
T Consensus 698 v~i~~~~~~v~~s~-~gd~G~~~~~l~~~~~~~~~--------------~~~~~i~-~~e~~~~~f~l~YL~~~~Ka~-~ 760 (798)
T 3k4x_A 698 INIMITKETIKFVA-DGDIGSGSVIIKPFVDMEHP--------------ETSIKLE-MDQPVDLTFGAKYLLDIIKGS-S 760 (798)
T ss_dssp EEEEEETTEEEEEE-ECSSCEEEEEECCBCCSSCG--------------GGCBEEE-ESSCEEEEEEHHHHHHHGGGG-G
T ss_pred EEEEEeCCEEEEEE-EcccceEEEEecCCCCCCCc--------------cccEEEE-cCCceEEEEEHHHHHHHhhhc-c
Confidence 99999987666664 45777666666554322211 1222222 478999999999996655433 3
Q ss_pred CCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEeccccc
Q 038865 242 CEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATMLVSQ 286 (345)
Q Consensus 242 ~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~~~~ 286 (345)
++..|.++|+ ++.||.++ |.+ ++ + .++|+|||+.+++
T Consensus 761 ls~~V~i~~~-~~~Pl~~~--y~i-~~---G-~i~fylAPki~~~ 797 (798)
T 3k4x_A 761 LSDRVGIRLS-SEAPALFQ--FDL-KS---G-FLQFFLAPKFNDE 797 (798)
T ss_dssp TCSEEEEEEC-SSSCEEEE--EEE-TT---E-EEEEEECCC----
T ss_pred CCCeEEEEeC-CCccEEEE--EEE-cc---e-EEEEEECcCCCCC
Confidence 4568999999 55999999 888 43 3 8899999999864
No 14
>1iz5_A Proliferating cell nuclear antigen; DNA, replication, processivity, sliding clamp, DNA binding protein; 1.80A {Pyrococcus furiosus} SCOP: d.131.1.2 d.131.1.2 PDB: 3a2f_B* 1iz4_A 1ge8_A 1isq_A 3lx1_A*
Probab=99.94 E-value=3.9e-24 Score=197.85 Aligned_cols=248 Identities=16% Similarity=0.246 Sum_probs=198.1
Q ss_pred CeeEEecccHHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHH
Q 038865 1 MEFAVSGNALKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAV 80 (345)
Q Consensus 1 M~~~l~~~~~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~v 80 (345)
|.|.....+++.|++++++++++.++++|+++++||.+.|+|.+|.|++.+.+.+++|+.|++++ .+.++++++.|.++
T Consensus 1 M~f~a~~~~~~~~~~i~~~i~~~l~gv~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~-~~~~~~~l~~l~ki 79 (249)
T 1iz5_A 1 MPFEIVFEGAKEFAQLIDTASKLIDEAAFKVTEDGISMRAMDPSRVVLIDLNLPSSIFSKYEVVE-PETIGVNLDHLKKI 79 (249)
T ss_dssp -CEEEEEECHHHHHHHHHHHTSSCSEEEEEECSSEEEEEEECTTSSEEEEEEEEGGGSSEEEESS-CEEEEEEHHHHHHH
T ss_pred CcEEEEeCchHHHHHHHHHHHHHhcEEEEEEeCCeEEEEEECCCcEEEEEEEECHHhCcEEEcCC-CeEEEEEHHHHHHH
Confidence 88888899999999999999999999999999999999999999999999999988999999987 47899999999999
Q ss_pred hcCCCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHHHhhhcCCcc
Q 038865 81 LRTPTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRLLSNFQSSLQ 160 (345)
Q Consensus 81 fk~~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~F~~~~e 160 (345)
+|. ..+.+.++|.+.+ +. .+.|++. ++.+++|.+++++ .+.....+|+..+++.+.++++.|.++++.+....+
T Consensus 80 l~~-~~~~~~v~i~~~~-~~-~l~f~~~--~~~~~~~~~rlid-g~~p~~~iP~~~~~~~v~i~~~~l~~a~~r~~~ls~ 153 (249)
T 1iz5_A 80 LKR-GKAKDTLILKKGE-EN-FLEITIQ--GTATRTFRVPLID-VEEMEVDLPELPFTAKVVVLGEVLKAAVKAASLVSD 153 (249)
T ss_dssp HTT-CCTTCEEEEEECS-SS-EEEEEEE--SSSEEEEEEECBC-CCC-----CCCCCCEEEEEEHHHHHHHHHHHTTTCS
T ss_pred HHh-CCCCCEEEEEECC-CC-eEEEEEe--cCCEEEEEEEccc-CCccCCCCCCCcceEEEEEEHHHHHHHHHHHHhcCC
Confidence 997 4467889999842 22 7777765 3447899999986 566666788768999999999999999999999899
Q ss_pred eEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHHHHHHHhhhc
Q 038865 161 EITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELKAFLSFCE 240 (345)
Q Consensus 161 eItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefkail~fae 240 (345)
+|+|.++++ .+.+++..|.+. ...++.-.. +++.+|. .+++++++|++|||+.++...+
T Consensus 154 ~V~l~~~~~--------------~l~ls~~~d~g~-----~~~~l~~~~-~~~~~~~-~ge~~~i~Fn~~yL~d~lk~~~ 212 (249)
T 1iz5_A 154 SIKFIAREN--------------EFIMKAEGETQE-----VEIKLTLED-EGLLDIE-VQEETKSAYGVSYLSDMVKGLG 212 (249)
T ss_dssp EEEEEEETT--------------EEEEEEECSSCE-----EEEEEETTT-TSSSEEE-ESSCEEEEEEHHHHHHHHTTSC
T ss_pred EEEEEEECC--------------EEEEEEEecCce-----EEEEEccCC-CccEEEE-cCCceEEEEeHHHHHHHhhhcc
Confidence 999998753 688887653322 334444322 2456675 5899999999999988887765
Q ss_pred cCCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEeccc
Q 038865 241 GCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATMLV 284 (345)
Q Consensus 241 ~~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~~ 284 (345)
. +..|.++|+. +.|++++ |.++++ + ...|+|||+.+
T Consensus 213 ~-s~~V~l~~~~-~~p~~i~--~~~~~~---~-~~~y~i~P~~~ 248 (249)
T 1iz5_A 213 K-ADEVTIKFGN-EMPMQME--YYIRDE---G-RLTFLLAPRVE 248 (249)
T ss_dssp T-TCEEEEEECT-TCCEEEE--EEETTT---E-EEEEEECCC--
T ss_pred C-CCeEEEEEcC-CCCEEEE--EEeCCC---c-EEEEEEccccC
Confidence 3 6789999995 6999998 555432 2 77999999975
No 15
>2ijx_A DNA polymerase sliding clamp A; PCNA3 subunit, protein-protein interaction, PCNA123 heterotr binding protein; HET: DNA; 1.90A {Sulfolobus solfataricus} PDB: 2nti_F* 2hii_C 2hik_C 2ix2_C*
Probab=99.94 E-value=6.9e-24 Score=195.60 Aligned_cols=240 Identities=11% Similarity=0.208 Sum_probs=197.8
Q ss_pred cccHHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhcCCCC
Q 038865 7 GNALKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLRTPTA 86 (345)
Q Consensus 7 ~~~~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk~~~~ 86 (345)
..+++.|++++++++++.++++|+++++||.+.|+|.+|.|++.+.+.+++|+.|++++ .+..+++++.|.++||+ .+
T Consensus 5 ~~~a~~~~~i~~~i~~~l~gv~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~-~i~~~~~l~~l~kiL~~-~~ 82 (244)
T 2ijx_A 5 YDDVRVLKDIIQALARLVDEAVLKFKQDSVELVALDRAHISLISVNLPREMFKEYDVND-EFKFGFNTQYLMKILKV-AK 82 (244)
T ss_dssp ESCHHHHHHHHHHHHHHCSEEEEEECSSEEEEEEECTTSSEEEEEEEEGGGCSEEECSS-CEEEEEEHHHHHHHHTT-CC
T ss_pred ECchHHHHHHHHHHHHHhceEEEEEecCeEEEEEECCCcEEEEEEEECHHhCceEEcCC-CEEEEEEHHHHHHHHhh-CC
Confidence 46789999999999999999999999999999999999999999999988999999987 47899999999999997 44
Q ss_pred ccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHHHhhhcCCcceEEEEE
Q 038865 87 SIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRLLSNFQSSLQEITVIA 166 (345)
Q Consensus 87 ~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~F~~~~eeItl~~ 166 (345)
+.+.++|.+.+ +.+.+.|++ +|++.+|.+++++ .+.....+|+..+++.++++++.|.++++.+....++|+|.+
T Consensus 83 ~~~~v~i~~~~-~~~~l~~~~---~~~~~~~~~rlid-g~~p~~~iP~~~~~~~i~i~~~~l~~a~~r~~~~s~~V~l~~ 157 (244)
T 2ijx_A 83 RKEAIEIASES-PDSVIINII---GSTNREFNVRNLE-VSEQEIPEINLQFDISATISSDGFKSAISEVSTVTDNVVVEG 157 (244)
T ss_dssp SSCEEEEEEEE-TTEEEEEEE---SSSEEEEEEECCC-CCCCCCCCCCCCCSEEEEEEHHHHHHHHHHHTTTCSEEEEEE
T ss_pred CCCEEEEEecC-CCCEEEEEE---CCEEEEEEEECCc-cCcccCCCCCCcccEEEEEEHHHHHHHHHHHHhcCCEEEEEE
Confidence 57889999843 457888887 5678999999986 566666788768999999999999999999999999999999
Q ss_pred cCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHHHHHHHhhhccCCCeE
Q 038865 167 TEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELKAFLSFCEGCEVDI 246 (345)
Q Consensus 167 t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefkail~fae~~~~~i 246 (345)
+++ .+.+++..|.+ . ..++.-+. +++.+|. .+++++++|++|||+.++...+. +..|
T Consensus 158 ~~~--------------~l~ls~~~d~g-----~-~~~l~~~~-~~~~~~~-~ge~~~i~Fn~~yL~d~lk~~~~-s~~V 214 (244)
T 2ijx_A 158 HED--------------RILIKAEGESE-----V-EVEFSKDT-GGLQDLE-FSKESKNSYSAEYLDDVLSLTKL-SDYV 214 (244)
T ss_dssp ETT--------------EEEEEETTCTT-----S-EEEEETTT-TCEEEEE-ESSCEEEEEEHHHHHHTGGGGGG-CSEE
T ss_pred ECC--------------EEEEEEEecCc-----e-EEEEeCCC-CccEEEE-cCCceEEEEEHHHHHHHhhhccC-CCEE
Confidence 763 67777644221 2 34454332 2566675 58999999999999888777753 6789
Q ss_pred EEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEecc
Q 038865 247 HLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATML 283 (345)
Q Consensus 247 ~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~ 283 (345)
.++|+. +.|++++ |.++++ + ...|+|||+.
T Consensus 215 ~l~~~~-~~p~~i~--~~~~~~---~-~~~y~i~P~~ 244 (244)
T 2ijx_A 215 KISFGN-QKPLQLF--FNMEGG---G-KVTYLLAPKV 244 (244)
T ss_dssp EEEEET-TEEEEEE--EECGGG---C-EEEEEECCCC
T ss_pred EEEEcC-CCCEEEE--EEeCCC---c-EEEEEECccC
Confidence 999995 6999998 656432 2 6799999974
No 16
>3aiz_A DNA polymerase sliding clamp B; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_B*
Probab=99.93 E-value=5.1e-24 Score=196.95 Aligned_cols=246 Identities=14% Similarity=0.227 Sum_probs=202.2
Q ss_pred eEEecccHHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhc
Q 038865 3 FAVSGNALKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLR 82 (345)
Q Consensus 3 ~~l~~~~~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk 82 (345)
|.....+++.|++++++++.+.++++|+++++||.+.|+|.+|.|++.+.+.+++|+.|++++ .+.++++++.|.+++|
T Consensus 2 f~a~~~~~~~~k~i~~~i~~~l~gv~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~-~i~~~~~l~~l~kil~ 80 (248)
T 3aiz_A 2 IKATYSSAKDFYSLLSGLLKVTDEIILNFTEDSIFSRYLTDDKVLMVIFKIPKEYLEDYTIDK-PLGIKININDLKKILG 80 (248)
T ss_dssp CEEEESCHHHHHHHHTTCTTCCSEEEEEECSSEEEEEEECTTSSEEEEEEEEGGGCEEEECSS-CEEEEEEHHHHHHHHH
T ss_pred eEEEecchHHHHHHHHHHHHHHheEEEEEccCcEEEEEECCCCEEEEEEEECHHhCceEEcCC-CeEEEEEHHHHHHHHh
Confidence 445567899999999999999999999999999999999999999999999988999999988 4789999999999999
Q ss_pred CCCCccceEEEEecCCCCCeEEEEEEeC-CCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHHHhhhcCCcce
Q 038865 83 TPTASIDNLTVQLPNSDAPKVQWTLKCY-NGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRLLSNFQSSLQE 161 (345)
Q Consensus 83 ~~~~~vd~~~i~l~d~d~~~L~~~l~c~-~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~F~~~~ee 161 (345)
. . +.+.++|.+.+ +.+.+.|++... +|++.+|.+++++ .+.....+|+..+++.++++++.|.++++.+....++
T Consensus 81 ~-~-~~~~v~i~~~~-~~~~l~~~~~~~~~~~~~~~~~rlid-g~~p~~~iP~~~~~~~v~~~~~~l~~av~r~~~~s~~ 156 (248)
T 3aiz_A 81 K-A-KSKSATVTLEE-TEAGLKVTVRDEKTGTRSNIYIKGEK-TSIDQLTEPKVNLSVTFTTDGDVLKDIARDLSLVGEE 156 (248)
T ss_dssp T-C-SSTTCEEEEEE-CSSEEEEEEEETTTTEEEEEEEECEE-ECCCCCCCCCCCCSEEEEECHHHHHHHHHHHTTSCSE
T ss_pred h-c-CCCEEEEEEeC-CCCeEEEEEEeCCCCEEEEEEEEccc-cCcccCCCCCCCccEEEEEeHHHHHHHHHHHHhcCCE
Confidence 7 3 56779998843 457899999764 6899999999986 5666667887689999999999999999999999999
Q ss_pred EEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHHHHHHHhhhcc
Q 038865 162 ITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELKAFLSFCEG 241 (345)
Q Consensus 162 Itl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefkail~fae~ 241 (345)
|+|.++++ .+.+++..|.+. ...++. ...++.+|. .+++++++|++|||+.++...+.
T Consensus 157 V~i~~~~~--------------~l~ls~~~d~g~-----~~~~~~--~~~~~~~~~-~ge~~~i~fn~~yL~d~lk~~~~ 214 (248)
T 3aiz_A 157 VEISADEN--------------TVTLSTEEAGRT-----YKSLLK--QDKPLKSLN-VESPSKAVYSIEVLKDVFKVTSI 214 (248)
T ss_dssp EEEEECSS--------------EEEEEEEETTEE-----EEEEEE--ETBEESEEE-ESSCEEEEEEHHHHHHHHHHGGG
T ss_pred EEEEEeCC--------------EEEEEEEccCce-----EEEEEc--CCCcceEEe-cCCceEEEEEHHHHHHHhhhccC
Confidence 99998753 688887643221 223332 222344565 58999999999999988888763
Q ss_pred CCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEecc
Q 038865 242 CEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATML 283 (345)
Q Consensus 242 ~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~ 283 (345)
+..|.++|+. +.|++++ |.++++ + ...|+|||+.
T Consensus 215 -s~~V~l~~~~-~~p~~i~--~~~~~~---~-~~~y~i~P~i 248 (248)
T 3aiz_A 215 -SQNVTVGFGN-NIPMKIE--VPTDSG---G-QLIFWIAPRL 248 (248)
T ss_dssp -CSSEEEEEET-TEEEEEE--EECTTS---C-EEEEEECCCC
T ss_pred -CCeEEEEEcC-CCCEEEE--EEeCCC---c-EEEEEECCcC
Confidence 6789999995 6999998 656442 2 6799999974
No 17
>1ud9_A DNA polymerase sliding clamp A; DNA-binding, DNA replication, DNA binding protein; HET: DNA; 1.68A {Sulfolobus tokodaii} SCOP: d.131.1.2 d.131.1.2
Probab=99.93 E-value=9.6e-24 Score=194.74 Aligned_cols=244 Identities=9% Similarity=0.179 Sum_probs=196.5
Q ss_pred EEecccHHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhcC
Q 038865 4 AVSGNALKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLRT 83 (345)
Q Consensus 4 ~l~~~~~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk~ 83 (345)
.....+++.|++++++++++.++++|+++++||.+.|+|.+|.|++.+.+.+++|+.|++++ .+..+++++.|.++|++
T Consensus 2 ~a~~~~~~~~k~i~~~i~~~l~gv~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~-~i~~~~~l~~l~kiL~~ 80 (245)
T 1ud9_A 2 HIVYDDVRDLKAIIQALLKLVDEALFDIKPEGIQLVAIDKAHISLIKIELPKEMFKEYDVPE-EFKFGFNTQYMSKLLKA 80 (245)
T ss_dssp EEEESCHHHHHHHHHHHHHHCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEECSS-CEEEEEEHHHHHHHHTT
T ss_pred EEEeCchHHHHHHHHHHHHHhceEEEEEcCCeEEEEEECCCcEEEEEEEEChHhCeEEEcCC-CeEEEEEHHHHHHHHhc
Confidence 34457899999999999999999999999999999999999999999999988999999987 47799999999999997
Q ss_pred CCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHHHhhhcCCcceEE
Q 038865 84 PTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRLLSNFQSSLQEIT 163 (345)
Q Consensus 84 ~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~F~~~~eeIt 163 (345)
..+.+.++|.+.+ +.+.+.|++ +|++.+|.+++++ .+.....+|+..+++.++++++.|.++++.+....++|+
T Consensus 81 -~~~~~~v~i~~~~-~~~~l~~~~---~~~~~~~~~rlid-g~~p~~~ip~~~~~~~i~i~~~~l~~a~~r~~~~s~~V~ 154 (245)
T 1ud9_A 81 -AKRKEEIIIDADS-PEVVKLTLS---GALNRVFNVNNIE-VLPPEVPEVNLEFDIKATINASGLKNAIGEIAEVADTLL 154 (245)
T ss_dssp -CCSCCCEEEEEEE-TTEEEEEEC---SSSCEEEEEECCC-CCCCCCC---CCCSEEEEEEHHHHHHHHHHHHHHCSEEE
T ss_pred -CCCCCEEEEEEcC-CCCEEEEEE---CCEEEEEEEECcc-cCcccCCCCCCCccEEEEEeHHHHHHHHHHHHhcCCEEE
Confidence 4456789999842 344788887 5677899999986 566666688768999999999999999999998889999
Q ss_pred EEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHHHHHHHhhhccCC
Q 038865 164 VIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELKAFLSFCEGCE 243 (345)
Q Consensus 164 l~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefkail~fae~~~ 243 (345)
|.++++ .+.+++..|.+ . ..++.-+.. ++.+|. .+++++++|++|||+.++...+. +
T Consensus 155 l~~~~~--------------~l~ls~~~d~g-----~-~~~l~~~~~-~~~~~~-~ge~~~i~Fn~~yL~d~lk~~~~-s 211 (245)
T 1ud9_A 155 ISGNEE--------------KVVVKGEGENK-----V-EVEFSKDTG-SLADIE-FNKESSSAYDVEYLNDIISLTKL-S 211 (245)
T ss_dssp EEECSS--------------EEEEEESSSSC-----C-CEEEEGGGT-CEEEEE-ESSCEEEEEEHHHHHHTGGGGGG-C
T ss_pred EEEECC--------------EEEEEEEccCc-----e-EEEEecCCC-ccEEEE-eCCceeEEEEHHHHHHHhhhccc-C
Confidence 998753 67887654322 2 345543332 456675 58999999999999888777753 6
Q ss_pred CeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEeccc
Q 038865 244 VDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATMLV 284 (345)
Q Consensus 244 ~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~~ 284 (345)
..|.++|+. +.|++++ |.++++ + ...|+|||+.+
T Consensus 212 ~~V~l~~~~-~~p~~i~--~~~~~~---~-~~~y~i~P~~~ 245 (245)
T 1ud9_A 212 DYVKVAFAD-QKPMQLE--FNMEGG---G-KVTYLLAPKLS 245 (245)
T ss_dssp SEEEEEECT-TSCEEEE--EECGGG---C-EEEEEECCBCC
T ss_pred CEEEEEEcC-CCCEEEE--EEeCCC---c-EEEEEEcccCC
Confidence 789999995 6999998 555332 2 67999999863
No 18
>3aiz_C DNA polymerase sliding clamp C; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_A*
Probab=99.92 E-value=1.4e-22 Score=187.11 Aligned_cols=245 Identities=16% Similarity=0.234 Sum_probs=198.6
Q ss_pred CeeEEecccHHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHH
Q 038865 1 MEFAVSGNALKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAV 80 (345)
Q Consensus 1 M~~~l~~~~~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~v 80 (345)
|+|... +.+.|++++++++.+.++++|+++++||.+.|+|.+|.|++.+.+.+++|+.|++++ .+..+++++.|.++
T Consensus 1 M~fr~~--~~~~lk~~i~~~~~~l~gv~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~-~i~~~~~l~~l~ki 77 (246)
T 3aiz_C 1 MRVKVI--DADAFSYIFRTLEEFIDEITLDFTSDGLKIRGIDPSRVTFIDILIPAGYFEEYNVEK-EEKVGVKLEDFTDV 77 (246)
T ss_dssp CEEEES--CHHHHHHHHHHHTTTCSEEEEEECSSEEEEEEECTTSCEEEEEEEEGGGSSEEECSS-CEEEEEEHHHHHHH
T ss_pred CceEEe--cHHHHHHHHHHHHHHhcEEEEEEcCCeEEEEEECCCcEEEEEEEEChHhCcEEEcCC-CeEEEEEHHHHHHH
Confidence 888888 899999999999999999999999999999999999999999999988999999987 47799999999999
Q ss_pred hcCCCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHHHhhhcCC-c
Q 038865 81 LRTPTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRLLSNFQSS-L 159 (345)
Q Consensus 81 fk~~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~F~~~-~ 159 (345)
|++ ..+.+.++|.+ + +.+.+.|++.. +.+++|.+++++ .+.....+|+..+++.++++++.|.++++.+... .
T Consensus 78 L~~-~~~~~~v~i~~-~-~~~~l~~~~~~--~~~~~~~~rlid-g~~p~~~iP~~~~~~~i~i~~~~l~~a~~r~~~l~s 151 (246)
T 3aiz_C 78 LKT-VTKNDSLYLET-D-ENQNIKVTLDG--VYERTFTFPSIV-ASEIETPNLNLEFPFKAKALTVTFTDIIDEIEDIGG 151 (246)
T ss_dssp HTT-CCTTCEEEEEE-C-SSSCEEEEEES--SSEEEEEECCCC-CCCCCCSCSCCCCSEEEEEEHHHHHHHHHHHHHHCC
T ss_pred Hhh-CCCCCEEEEEE-C-CCCeEEEEEec--CcEEEEEEEccc-CCcccCCCCCCcccEEEEEEHHHHHHHHHHHhhCCC
Confidence 997 44678899998 3 43588888863 347899999986 5666666887689999999999999999999987 8
Q ss_pred ceEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHHHHHHHhhh
Q 038865 160 QEITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELKAFLSFC 239 (345)
Q Consensus 160 eeItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefkail~fa 239 (345)
++|+|.++++ .+.+++..|.+. ...++.-.. +++.+|. +++++++|++|||+.++...
T Consensus 152 ~~V~l~~~~~--------------~l~ls~~~d~g~-----~~~~l~~~~-~~~~~~~--ge~~~i~Fn~~yL~d~lk~~ 209 (246)
T 3aiz_C 152 DSITFKAEGG--------------KLYLSANSDMGS-----STIELSTEN-GGLLESE--GGDAESVYGLEYVVNTSKMR 209 (246)
T ss_dssp SEEEEEEETT--------------EEEEEEECSSCE-----EEEEECTTT-TSCSEEE--ECCEEEEEEHHHHHTTGGGT
T ss_pred CEEEEEEECC--------------EEEEEEEcCCce-----EEEEEecCC-CccEEEE--EeeEEEEEEHHHHHHHhhhc
Confidence 8999998753 678887653322 223332222 2455675 48899999999997776666
Q ss_pred ccCCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEeccc
Q 038865 240 EGCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATMLV 284 (345)
Q Consensus 240 e~~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~~ 284 (345)
+. +..|.++|+. +.|++++ |.++++ + ...|+|||+.+
T Consensus 210 ~~-s~~V~l~~~~-~~p~~i~--~~~~~~---~-~~~y~i~P~~~ 246 (246)
T 3aiz_C 210 KP-SDTVEIAFGS-QIPLKLR--YNLPQG---G-YADFYIAPRAE 246 (246)
T ss_dssp TT-CSEEEEEEET-TEEEEEE--EEETTT---E-EEEEEECBCCC
T ss_pred cC-CCeEEEEecC-CCcEEEE--EEeCCC---C-EEEEEEcccCC
Confidence 42 5789999995 6999998 555432 2 67999999863
No 19
>1rwz_A DNA polymerase sliding clamp; torus, processivity factor, replication; HET: DNA; 1.80A {Archaeoglobus fulgidus} SCOP: d.131.1.2 d.131.1.2 PDB: 1rxm_A* 1rxz_A* 3p83_A*
Probab=99.91 E-value=1.8e-21 Score=179.66 Aligned_cols=240 Identities=11% Similarity=0.190 Sum_probs=191.7
Q ss_pred cccHHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhcCCCC
Q 038865 7 GNALKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLRTPTA 86 (345)
Q Consensus 7 ~~~~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk~~~~ 86 (345)
..+++.|++++++++.+.++++|+++++||.+.|+|.+|.|++.+.+.+.+|+.|++++ .+..+++++.|.++|++ ..
T Consensus 5 ~~~~~~~~~i~~~i~~~l~gv~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~-~i~~~~~l~el~kiL~~-~~ 82 (245)
T 1rwz_A 5 IMTGELLKTVTRAIVALVSEARIHFLEKGLHSRAVDPANVAMVIVDIPKDSFEVYNIDE-EKTIGVDMDRIFDISKS-IS 82 (245)
T ss_dssp EEEHHHHHHHHHHHHTTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEEESS-CEEEEEEHHHHHHHHTT-SC
T ss_pred ecchHHHHHHHHHHHHHhceEEEEEcCCeEEEEEECCCcEEEEEEEEChHhCceEEcCC-CeEEEEEHHHHHHHHhh-CC
Confidence 36899999999999999999999999999999999999999999999988999999987 47799999999999997 44
Q ss_pred ccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHHHhhhcCCcceEEEEE
Q 038865 87 SIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRLLSNFQSSLQEITVIA 166 (345)
Q Consensus 87 ~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~F~~~~eeItl~~ 166 (345)
+.+.++|.+.+ +. .+.|.+. +.+++|.+++++ .+.....+|+..+++.+.++++.|.++++......++|+|.+
T Consensus 83 ~~~~v~i~~~~-~~-~l~~~~~---~~~~~~~~rlid-g~~p~~~iP~~~~~~~v~~~~~~l~~av~r~~~ls~~V~l~~ 156 (245)
T 1rwz_A 83 TKDLVELIVED-ES-TLKVKFG---SVEYKVALIDPS-AIRKEPRIPELELPAKIVMDAGEFKKAIAAADKISDQVIFRS 156 (245)
T ss_dssp TTSEEEEEESS-SS-EEEEEET---TEEEEEECBCGG-GSCCCCCCCCCCCSEEEEEEHHHHHHHHHHHHTTCSEEEEEE
T ss_pred CCCEEEEEECC-CC-eEEEEEe---eeEEEEEEEccc-cCccCCCCCCCcccEEEEEEHHHHHHHHHHHHhcCCEEEEEE
Confidence 57889999842 22 6666653 367899999986 566666788768999999999999999999999889999998
Q ss_pred cCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHHHHHHHhhhccCCCeE
Q 038865 167 TEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELKAFLSFCEGCEVDI 246 (345)
Q Consensus 167 t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefkail~fae~~~~~i 246 (345)
+++ .+.+++..|.+. .+...+. ++..+|. +++++++|++|||+.++...+. +..|
T Consensus 157 ~~~--------------~l~ls~~~d~g~-------~~~~~~~-e~~~~~~--g~~~~i~Fn~~yL~d~lk~~~~-s~~V 211 (245)
T 1rwz_A 157 DKE--------------GFRIEAKGDVDS-------IVFHMTE-TELIEFN--GGEARSMFSVDYLKEFCKVAGS-GDLL 211 (245)
T ss_dssp ETT--------------EEEEEEECSSCE-------EEEEECG-GGSSEEC--CCCEEEEEEHHHHHHHGGGCCT-TCEE
T ss_pred ECC--------------EEEEEEEccCcE-------EEEecCC-CccEEEE--EeeEEEEEeHHHHHHHhhhccC-CCeE
Confidence 753 678877543221 2232221 1344554 4559999999999777766642 6689
Q ss_pred EEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEecccc
Q 038865 247 HLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATMLVS 285 (345)
Q Consensus 247 ~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~~~ 285 (345)
.++|+. +.|++++ |.++++ ++ ...|+|||+.++
T Consensus 212 ~l~~~~-~~p~~i~--~~~~~~--~~-~~~y~i~P~~~~ 244 (245)
T 1rwz_A 212 TIHLGT-NYPVRLV--FELVGG--RA-KVEYILAPRIES 244 (245)
T ss_dssp EEEECS-SSCEEEE--EEETTT--TE-EEEEEECCBCCC
T ss_pred EEEECC-CCCEEEE--EEECCC--cE-EEEEEEccccCC
Confidence 999995 6999998 555332 02 679999999875
No 20
>3a1j_B HHUS1, checkpoint protein HUS1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_C 3ggr_B
Probab=99.90 E-value=1.3e-21 Score=184.88 Aligned_cols=257 Identities=12% Similarity=0.134 Sum_probs=194.0
Q ss_pred CeeEEecccH---HHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcC---CccEEEEEEeCccCCceeeecC-----CEEE
Q 038865 1 MEFAVSGNAL---KTFARCLACLSRIGNELVIQASSHQLAFHTLNS---SRSAYQSITFMPNFFDVYTVSG-----AQVQ 69 (345)
Q Consensus 1 M~~~l~~~~~---k~f~rai~~Lskigdel~ie~~~~gL~L~avNs---SrSA~~~~~f~~~FF~~Y~~~~-----~~~~ 69 (345)
|+|...-.+. +.|+|+++++++++++.+|.++++||.|++++. ++++..+.....++|++|+|++ +.+.
T Consensus 2 MkF~a~l~~~~~~~~lkki~~ai~~L~k~~~l~~t~~~l~~~~~d~~~~~~v~l~~~~~~~~~F~~Y~~~s~~~~~n~I~ 81 (281)
T 3a1j_B 2 MKFRAKIVDGACLNHFTRISNMIAKLAKTCTLRISPDKLNFILCDKLANGGVSMWCELEQENFFNEFQMEGVSAENNEIY 81 (281)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHHHHHCSEEEEEECSSEEEEEECCCC--CCCEEEEEEEGGGTCSEEEEECSSSTTCCEE
T ss_pred ceEEEEecCcchHHHHHHHHHHHHHHhCEEEEEEcCCEEEEEECCCCCCCeEEEEEEeehhcCCCCeEEeeccCCCCEEE
Confidence 8888777654 599999999999999999999999999999998 8999999989999999999984 5799
Q ss_pred EEEEchhhHHHhcCCCCccceEEEEecCCCCCeEEEEEEe----CCC--eEEEEEeeecccCcccccccCCC-CCceEEE
Q 038865 70 CSVLLKAVCAVLRTPTASIDNLTVQLPNSDAPKVQWTLKC----YNG--MKKAYWITCNVEPDIQHLSLDRR-RFPSNFV 142 (345)
Q Consensus 70 ~~i~~Ksll~vfk~~~~~vd~~~i~l~d~d~~~L~~~l~c----~~g--I~Kt~~L~~~~~~~~~~~~~~~~-~~~~~l~ 142 (345)
+++++.+|.++||+ +.+-+.++|++.+.+...|.|.... ... ++..+.+++.+..+.+++..|.. .|...+.
T Consensus 82 l~v~~~~L~k~Lk~-a~n~~~~~ikL~k~~~p~L~fe~~~~~~~~~~~~v~~dipvkll~~~~~e~l~~P~~~~~dv~i~ 160 (281)
T 3a1j_B 82 LELTSENLSRALKT-AQNARALKIKLTNKHFPCLTVSVELLSMSSSSRIVTHDIPIKVIPRKLWKDLQEPVVPDPDVSIY 160 (281)
T ss_dssp EEEEHHHHHHHGGG-GGGEEEEEEEEECSSSCEEEEEEEECCSSSCCCEEEEEEECEECCGGGGGGGSCCCCCCCSEEEE
T ss_pred EEEeHHHHHHHHHh-cCCCCeEEEEeccCCCCEEEEEEEcccCCCCceEEEEEeeeEEcCHHHHhhcCCCCCCCCCeEEE
Confidence 99999999999999 6789999999855444566666653 223 33456556654235677778776 6889999
Q ss_pred Ecc-hhHHHHHhhhcCCcceEEEEEcCCC-CCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccC
Q 038865 143 VRP-RDLNRLLSNFQSSLQEITVIATEPT-SLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSG 220 (345)
Q Consensus 143 i~~-~~L~~~l~~F~~~~eeItl~~t~~~-~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~ 220 (345)
|++ +.|+++++.|....+.|+|.++.++ .+|+. +++.+...+.++....+..+... ....+ ..+
T Consensus 161 lPsl~~~~~iv~~lk~i~d~v~i~a~~~G~l~f~~-~~d~~~~~~~~~~l~~~~~~~~~---~~~~~----------~~~ 226 (281)
T 3a1j_B 161 LPVLKTMKSVVEKMKNISNHLVIEANLDGELNLKI-ETELVCVTTHFKDLGNPPLASES---THEDR----------NVE 226 (281)
T ss_dssp CCCHHHHHHHHHHHHTTCSEEEEEECTTSCEEEEE-ECSSEEEEEEECCCCCCCC-----------------------CC
T ss_pred CCCHHHHHHHHHHHhccCCeEEEEEECCCeEEEEE-EeeeEEEEEEEcCCCCCCCCccc---ccccc----------CCC
Confidence 999 8999999999999999999999765 66664 56677777777765544322100 01111 146
Q ss_pred CceEEEEEhHHHHHHHhhhccCCCeEEEE-eeCCCCcEEEeeeccCCCCCCCceEEEEEEEe
Q 038865 221 DPVDVTFGVKELKAFLSFCEGCEVDIHLF-FDKAGEPILMAPKFGLDDGSGSNFDATLVLAT 281 (345)
Q Consensus 221 ~~~~itF~LKefkail~fae~~~~~i~i~-f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT 281 (345)
++++++|.+|||..++. |..++-.+.+. ++ ++.|+++ |.+.+. + ..+|||+-
T Consensus 227 ~~~sv~~~~k~l~~f~k-~~~ls~~v~~~~i~-~~~~l~~---y~~~~~---g-~l~yylp~ 279 (281)
T 3a1j_B 227 HMAEVHIDIRKLLQFLA-GQQVNPTKALCNIV-NNKMVHF---DLLHED---V-SLQYFIPA 279 (281)
T ss_dssp CCEEEEEEHHHHHHHHH-HCCSCCSEEEEEEE-TTTEEEE---EEESSS---C-EEEEEEEC
T ss_pred ccEEEEEEHHHHHHhhC-cccCCCcEEEEEEe-CCceEEE---EEeCCc---E-EEEEEeee
Confidence 78999999999966665 33334455555 55 7799988 445542 2 78999974
No 21
>1vpk_A DNA polymerase III, beta subunit; TM0262, structural genomic center for structural genomics, JCSG, protein structure INI PSI, transferase; HET: DNA; 2.00A {Thermotoga maritima} SCOP: d.131.1.1 d.131.1.1 d.131.1.1
Probab=98.83 E-value=7.4e-07 Score=86.90 Aligned_cols=218 Identities=14% Similarity=0.160 Sum_probs=150.8
Q ss_pred HHHHHHHHHHHhhcC-c--------eEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHH
Q 038865 10 LKTFARCLACLSRIG-N--------ELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAV 80 (345)
Q Consensus 10 ~k~f~rai~~Lskig-d--------el~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~v 80 (345)
.+.|+++|.-.+-.. + -++|++.+++|.+.|.|..|-|...+.+... .+ ....+..|.+.-+
T Consensus 143 ~~~L~~~I~r~~~a~s~~e~r~~l~GV~l~~~~~~l~~vAtDg~rla~~~~~~~~~--------~~-~~~iip~k~l~el 213 (378)
T 1vpk_A 143 TSLLEEMVEKVIFAAAKDEFMRNLNGVFWELHKNLLRLVASDGFRLALAEEQIENE--------EE-ASFLLSLKSMKEV 213 (378)
T ss_dssp HHHHHHHHHHHGGGSCCCTTCTTTSEEEEEEETTEEEEEEECSSEEEEEEEECCCC--------SC-EEEEEEHHHHHHH
T ss_pred HHHHHHHHhheEEEEECCCCcceeeEEEEEEECCEEEEEEeCcccEEEEEEecCCC--------Cc-ceEEEEchHHHHH
Confidence 456777777776654 3 2999999999999999999999998877543 12 5677888887776
Q ss_pred hcCCCCccc-eEEEEecCCCCCeEEEEEEeCCCeEEEEEeeeccc--CcccccccCCCCCceEEEEcchhHHHHHhhhcC
Q 038865 81 LRTPTASID-NLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVE--PDIQHLSLDRRRFPSNFVVRPRDLNRLLSNFQS 157 (345)
Q Consensus 81 fk~~~~~vd-~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~--~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~F~~ 157 (345)
.|......+ .+.|.+. .+++.|++ . + .++..++.+. ++..+ .+|+ .+++.++++.+.|.+.++....
T Consensus 214 ~k~L~~~~~~~V~i~~~---~~~i~f~~--~-~--~~~~srLidg~fPdy~~-vip~-~~~~~~~v~~~~l~~al~Rv~~ 283 (378)
T 1vpk_A 214 QNVLDNTTEPTITVRYD---GRRVSLST--N-D--VETVMRVVDAEFPDYKR-VIPE-TFKTKVVVSRKELRESLKRVMV 283 (378)
T ss_dssp HHHHHTCCCSEEEEEEC---SSEEEEEC--S-S--EEEEEECCSSCCCCGGG-GSCS-CCSEEEEEEHHHHHHHHHHHHH
T ss_pred HHhhccCCCceEEEEEc---CCEEEEEE--C-C--EEEEEEeccccCCCHHH-hccc-CCCeEEEEEHHHHHHHHHHHHH
Confidence 665322234 7888883 35566553 3 2 3444555542 12233 3565 7899999999999999987765
Q ss_pred Ccce----EEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHHHH
Q 038865 158 SLQE----ITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELK 233 (345)
Q Consensus 158 ~~ee----Itl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefk 233 (345)
..++ |.|.+++ +.+.+.+...+.. ....++.+ +| .|++.+|.|+.|||.
T Consensus 284 ~s~~~~~~v~l~~~~--------------~~l~i~a~~~d~g----~a~e~l~~-------~~--~G~~~~i~fN~~yL~ 336 (378)
T 1vpk_A 284 IASKGSESVKFEIEE--------------NVMRLVSKSPDYG----EVVDEVEV-------QK--EGEDLVIAFNPKFIE 336 (378)
T ss_dssp HHTTTTCCEEEEECS--------------SEEEEEEEETTTE----EEEEEEEC-------EE--EECCEEEEECHHHHH
T ss_pred HhcCCCceEEEEEeC--------------CEEEEEEcCCccc----eeEEEEEE-------Ee--cCCeEEEEEcHHHHH
Confidence 4444 8888764 3677776543221 01112211 34 378999999999999
Q ss_pred HHHhhhccCCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEecc
Q 038865 234 AFLSFCEGCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATML 283 (345)
Q Consensus 234 ail~fae~~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~ 283 (345)
.+|.-.+ +..|.+.|..+.+|+++++ . ++ . ...++|+|+.
T Consensus 337 d~L~~~~--~~~v~l~~~~~~~p~~i~~--~-~~---~--~~~~limP~r 376 (378)
T 1vpk_A 337 DVLKHIE--TEEIEMNFVDSTSPCQINP--L-DI---S--GYLYIVMPIR 376 (378)
T ss_dssp HHHHHCC--SSEEEEEESCTTSCEEEEE--T-TC---C--SEEEEECCBC
T ss_pred HHHhcCC--CCEEEEEECCCCCCEEEEc--C-CC---C--ceEEEEEeec
Confidence 9888777 5679999999999999983 2 22 2 3578999874
No 22
>3d1g_A DNA polymerase III subunit beta; chemical probe, DNA sliding clamp, DNA replication, rational drug design, antibiotic target, transferase; HET: DNA 322; 1.64A {Escherichia coli} SCOP: d.131.1.1 d.131.1.1 d.131.1.1 PDB: 1mmi_A* 1unn_A* 2pol_A* 3bep_A* 3d1e_A* 3d1f_A* 1ok7_A* 3q4j_A* 3q4k_A* 3qsb_A* 3q4l_A* 2xur_A* 1jql_A* 1jqj_A* 3f1v_A* 3pwe_A*
Probab=98.72 E-value=8.8e-06 Score=79.07 Aligned_cols=219 Identities=13% Similarity=0.156 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHh---------hcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHH
Q 038865 10 LKTFARCLACLS---------RIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAV 80 (345)
Q Consensus 10 ~k~f~rai~~Ls---------kigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~v 80 (345)
...|+++|.... -+=..++|++.+++|.+.|.|.-|-|+..+.+.... +...+-|..|.+..+
T Consensus 132 ~~~l~~~i~~t~fA~s~de~r~~L~Gv~~~~~~~~l~~vATDg~RLa~~~~~~~~~~--------~~~~~iiP~k~l~el 203 (366)
T 3d1g_A 132 QATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSL--------PSHSVIVPRKGVIEL 203 (366)
T ss_dssp HHHHHHHHHHHGGGSCSSCSSGGGSEEEEEEEEEEEEEEEECSSEEEEEEEEEEEEE--------EEEEEEEEHHHHHHH
T ss_pred HHHHHHHHhheeEEeccCCCccceEEEEEEEeCCEEEEEEeCCccEEEEEeccCCCC--------cccEEEEEHHHHHHH
Confidence 355666666443 334468999999999999999999999998775432 124566888888777
Q ss_pred hcCCCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeeccc--CcccccccCCCCCceEEEEcchhHHHHHhhhcCC
Q 038865 81 LRTPTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVE--PDIQHLSLDRRRFPSNFVVRPRDLNRLLSNFQSS 158 (345)
Q Consensus 81 fk~~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~--~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~F~~~ 158 (345)
.|-.....+.+.|.+ +++++.|++ .+ .++..++.+. ++..+ .+|+ .+++.++++.+.|.+.++.....
T Consensus 204 ~kll~~~~~~v~i~~---~~~~i~f~~--~~---~~~~srLidg~fPdy~~-viP~-~~~~~~~v~~~~l~~al~Rvsil 273 (366)
T 3d1g_A 204 MRMLDGGDNPLRVQI---GSNNIRAHV--GD---FIFTSKLVDGRFPDYRR-VLPK-NPDKHLEAGCDLLKQAFARAAIL 273 (366)
T ss_dssp HHTCCSSSCCEEEEE---CSSEEEEEE--TT---EEEEEECCSSCCCCHHH-HSCS-CCCEEEEEEHHHHHHHHHHHHHT
T ss_pred HHhcccCCccEEEEE---cCCEEEEEE--CC---EEEEEEEecccCCChhh-cCCC-CCCeEEEEEHHHHHHHHHHHHHH
Confidence 776433356688887 346666664 32 3444455531 12233 3665 78999999999999999887644
Q ss_pred cc----eEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHHHHH
Q 038865 159 LQ----EITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELKA 234 (345)
Q Consensus 159 ~e----eItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefka 234 (345)
.+ -|.|.+.+ +.+.+.+...+.. ....++.+ +| .|++.+|.|+.|||..
T Consensus 274 s~~~~~~v~l~~~~--------------~~l~i~a~~~e~g----~a~e~l~~-------~~--~Ge~~~I~fN~~YL~d 326 (366)
T 3d1g_A 274 SNEKFRGVRLYVSE--------------NQLKITANNPEQE----EAEEILDV-------TY--SGAEMEIGFNVSYVLD 326 (366)
T ss_dssp SCTTTCEEEEEEET--------------TEEEEEEECTTCC----EEEEEEEC-------BC--CSCCEEEEEEHHHHHH
T ss_pred hcCCCceEEEEEeC--------------CEEEEEEcCCCCc----eEEEEEEE-------Ee--cCCcEEEEEcHHHHHH
Confidence 43 38887764 3677776642221 11222221 23 4789999999999998
Q ss_pred HHhhhccCCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEecc
Q 038865 235 FLSFCEGCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATML 283 (345)
Q Consensus 235 il~fae~~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~ 283 (345)
+|.-.+ +..|.+.|..+.+|+++++. ++ . ...++++|+.
T Consensus 327 ~L~~~~--~~~v~l~~~~~~~p~~i~~~---~~---~--~~~ylvmP~r 365 (366)
T 3d1g_A 327 VLNALK--CENVRMMLTDSVSSVQIEDA---AS---Q--SAAYVVMPMR 365 (366)
T ss_dssp HHHHCC--SSEEEEEECCTTSCEEEEET---TE---E--EEEEEECCBC
T ss_pred HHhcCC--CCEEEEEECCCCCCEEEEcC---CC---C--ceEEEEEEcC
Confidence 888776 56799999999999999842 22 1 5678998873
No 23
>2avt_A DNA polymerase III beta subunit; beta clamp, sliding clamp, replication, transferase; HET: DNA; 2.00A {Streptococcus pyogenes} PDB: 2awa_A*
Probab=98.65 E-value=1.5e-05 Score=77.83 Aligned_cols=205 Identities=14% Similarity=0.173 Sum_probs=141.6
Q ss_pred CceEEEEEcCC-eEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhcCCCCccceEEEEecCCCCCe
Q 038865 24 GNELVIQASSH-QLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLRTPTASIDNLTVQLPNSDAPK 102 (345)
Q Consensus 24 gdel~ie~~~~-gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk~~~~~vd~~~i~l~d~d~~~ 102 (345)
=..++|++.++ +|.+.|.|.-|-|+..+.+.... ....+-|..|.+.-+.|-.....+.+.|.+ ++++
T Consensus 162 L~Gv~~~~~~~~~l~~vATDg~RLa~~~~~~~~~~--------~~~~~iiP~k~l~el~kll~~~~~~v~i~~---~~~~ 230 (378)
T 2avt_A 162 LTGVHIVLSNHKDFKAVATDSHRMSQRLITLDNTS--------ADFMVVLPSKSLREFSAVFTDDIETVEVFF---SPSQ 230 (378)
T ss_dssp GGEEEEEEETTTEEEEEEECSSEEEEEEEECSSCC--------CCEEEEEEHHHHHHHHHHSCTTCCEEEEEE---CSSE
T ss_pred eEEEEEEECCCCeEEEEEecCeeEEEEEeccCCCC--------CccEEEEEhHHHHHHHHhcccCCceEEEEE---cCCE
Confidence 34689999999 99999999999999998775531 134566888887766665333356788887 3456
Q ss_pred EEEEEEeCCCeEEEEEeeeccc--CcccccccCCCCCceEEEEcchhHHHHHhhhcCCcce-----EEEEEcCCCCCCCC
Q 038865 103 VQWTLKCYNGMKKAYWITCNVE--PDIQHLSLDRRRFPSNFVVRPRDLNRLLSNFQSSLQE-----ITVIATEPTSLPSD 175 (345)
Q Consensus 103 L~~~l~c~~gI~Kt~~L~~~~~--~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~F~~~~ee-----Itl~~t~~~~~~s~ 175 (345)
+.|++ .+ .++..++.+. ++..+ .+|+ .+++.++++.+.|.+.++......++ |.|.+.+
T Consensus 231 i~f~~--~~---~~~~srLidg~fPdy~~-viP~-~~~~~~~v~~~~l~~al~Rvs~ls~~~~~~~v~l~~~~------- 296 (378)
T 2avt_A 231 ILFRS--EH---ISFYTRLLEGNYPDTDR-LLMT-EFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEITQ------- 296 (378)
T ss_dssp EEEEC--SS---EEEEEECCCSCCCCCGG-GSCC-CCSEEEEEEHHHHHHHHHHHHHHHTTSTTCCEEEEEET-------
T ss_pred EEEEE--CC---EEEEEEEecccCCChhh-cCCC-CCCEEEEEEHHHHHHHHHHHHHHhccCCCceEEEEEeC-------
Confidence 66654 32 3444445431 13343 3565 58999999999999999877543333 8887764
Q ss_pred cccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccce--eecccCCceEEEEEhHHHHHHHhhhccCCCeEEEEeeCC
Q 038865 176 AASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFV--QYTHSGDPVDVTFGVKELKAFLSFCEGCEVDIHLFFDKA 253 (345)
Q Consensus 176 ~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~--~y~~~~~~~~itF~LKefkail~fae~~~~~i~i~f~~~ 253 (345)
+.+.+.+...+.. +.. |++. +|. |++.+|.|+.|||..+|.-.+ +..|.+.|..+
T Consensus 297 -------~~l~l~a~~~e~g--------~a~----e~l~~~~~~--Ge~~~I~FN~~YL~d~L~~~~--~~~v~l~~~~~ 353 (378)
T 2avt_A 297 -------NHISAHVNSPEVG--------KVN----EDLDIVSQS--GSDLTISFNPTYLIESLKAIK--SETVKIHFLSP 353 (378)
T ss_dssp -------TEEEEEEEETTTE--------EEE----EECCCSEEE--ECCEEEEECHHHHHHHHHTCC--SSEEEEEECCT
T ss_pred -------CEEEEEEeCCCCc--------eeE----EEEeeeeec--CCeEEEEEcHHHHHHHHhcCC--CCEEEEEECCC
Confidence 3677776543221 111 2331 354 789999999999988888776 56799999999
Q ss_pred CCcEEEeeeccCCCCCCCceEEEEEEEecc
Q 038865 254 GEPILMAPKFGLDDGSGSNFDATLVLATML 283 (345)
Q Consensus 254 G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~ 283 (345)
.+|+++++. ++. + ...++++|+.
T Consensus 354 ~~p~~i~~~---~~~---~-~~~ylvmPvr 376 (378)
T 2avt_A 354 VRPFTLTPG---DEE---E-SFIQLITPVR 376 (378)
T ss_dssp TSCEEEEET---TCC---S-EEEEEECCCC
T ss_pred CCCEEEEcC---CCC---C-ceEEEEEeee
Confidence 999999842 221 1 4588999874
No 24
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.43 E-value=1e-06 Score=78.62 Aligned_cols=86 Identities=22% Similarity=0.382 Sum_probs=59.5
Q ss_pred ccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHHHHHHHhhhccCCCeEEEEeeCCCCc
Q 038865 177 ASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELKAFLSFCEGCEVDIHLFFDKAGEP 256 (345)
Q Consensus 177 ~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefkail~fae~~~~~i~i~f~~~G~P 256 (345)
.||+|...|.++......++ ++...+. +.+|++.+|+|+||+.|...+ .++-.|.|.|+ .+.|
T Consensus 114 ~GD~G~~~i~l~~~~~~dk~--------------e~~v~ie-~~e~v~~~fsl~YL~~f~Ka~-~ls~~V~l~l~-~~~P 176 (200)
T 3pge_A 114 DGDIGSGSVIIKPFVDMEHP--------------ETSIKLE-MDQPVDLTFGAKYLLDIIKGS-SLSDRVGIRLS-SEAP 176 (200)
T ss_dssp ECSSCEEEEEECCBCCSSSC--------------TTCBEEE-ESSCEEEEEEHHHHHHHGGGG-GGCSEEEEEEC-SSSC
T ss_pred eccCCeEEEEEecCCCCCCc--------------ccceEEE-eCCcceeeEhHHHHHHHhccc-cCCCeEEEEEc-CCCC
Confidence 46777777777665433221 1222233 568999999999996655433 34568999999 5699
Q ss_pred EEEeeeccCCCCCCCceEEEEEEEeccccc
Q 038865 257 ILMAPKFGLDDGSGSNFDATLVLATMLVSQ 286 (345)
Q Consensus 257 l~~~~~f~l~d~~~~~~~a~fvLAT~~~~~ 286 (345)
|.++ |.++. + .+.|+|||+.+++
T Consensus 177 l~l~--y~i~~----G-~l~f~LAPrie~~ 199 (200)
T 3pge_A 177 ALFQ--FDLKS----G-FLQFFLAPKFNDE 199 (200)
T ss_dssp EEEE--EEETT----E-EEEEEECCCCC--
T ss_pred EEEE--EEECC----E-EEEEEECCccCCC
Confidence 9999 88863 2 7899999999863
No 25
>3t0p_A DNA polymerase III, beta subunit; DNA clamp, structural genomics, joint center for structural JCSG, protein structure initiative; HET: DNA MSE; 2.26A {Eubacterium rectale}
Probab=98.32 E-value=0.0001 Score=71.70 Aligned_cols=203 Identities=12% Similarity=0.156 Sum_probs=139.9
Q ss_pred ceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhcCCC-CccceEEEEecCCCCCeE
Q 038865 25 NELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLRTPT-ASIDNLTVQLPNSDAPKV 103 (345)
Q Consensus 25 del~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk~~~-~~vd~~~i~l~d~d~~~L 103 (345)
.-++|++.+++|.+-|.|.-|-|+..+.+... .....+-|..|.+.-+.|-.. ...+.+.|.+. ++++
T Consensus 156 ~Gv~~~~~~~~l~~vATDg~RLa~~~~~~~~~--------~~~~~~iIP~k~l~el~kll~~~~~~~V~i~~~---~~~i 224 (371)
T 3t0p_A 156 TGELFEIEENKLRVVSLDGHRISIRYIEMKNH--------YDSKKVVVPGKTLQEISKIIPGSADEDVVIYIT---NNHI 224 (371)
T ss_dssp GEEEEEEEEEEEEEEEECSSEEEEEEEEEEEE--------EEEEEEEEEHHHHHHHHHHCCCCTTSEEEEEEE---TTEE
T ss_pred eEEEEEEECCEEEEEEecceEEEEEEeccCCC--------CCceEEEEEHHHHHHHHHhcCcCCCceEEEEEc---CCEE
Confidence 44899999999999999999999998876532 123567788898887776543 24578888883 4556
Q ss_pred EEEEEeCCCeEEEEEeeecc--cCcccccccCCCCCceEEEEcchhHHHHHhhhcCCcc-----eEEEEEcCCCCCCCCc
Q 038865 104 QWTLKCYNGMKKAYWITCNV--EPDIQHLSLDRRRFPSNFVVRPRDLNRLLSNFQSSLQ-----EITVIATEPTSLPSDA 176 (345)
Q Consensus 104 ~~~l~c~~gI~Kt~~L~~~~--~~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~F~~~~e-----eItl~~t~~~~~~s~~ 176 (345)
.|+ +.+ +.-+-+ +.+ -++..+ .+|+ .++..++++.+.|.+.++....... -|.|.+++
T Consensus 225 ~f~--~~~-~~~~sr--LidG~fPdy~~-viP~-~~~~~~~v~r~~l~~al~Rvs~ls~e~~~~~V~l~~~~-------- 289 (371)
T 3t0p_A 225 VFE--FEN-TTVVSR--LIEGEYFKIDQ-MLSS-DYDTKVRINKRELLDCIDRATLLVKEGDKKPIIMNITD-------- 289 (371)
T ss_dssp EEE--ETT-EEEEEE--CCCSCCCCCGG-GCCC-CCSEEEEEEHHHHHHHHHHHHTTCCC-CCCCEEEEEET--------
T ss_pred EEE--ECC-EEEEEE--EecccCCChhh-hccc-cCCEEEEEEHHHHHHHHHHHHHhhccCCCceEEEEEeC--------
Confidence 555 333 333333 332 112233 4565 6889999999999999988864332 38887764
Q ss_pred ccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHHHHHHHhhhccCCCeEEEEeeCCCCc
Q 038865 177 ASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELKAFLSFCEGCEVDIHLFFDKAGEP 256 (345)
Q Consensus 177 ~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefkail~fae~~~~~i~i~f~~~G~P 256 (345)
+.+.+.+..+.+ ...-++.+ +| .|++.+|.|+.|||..+|.-.++ ..|.+.|..+.+|
T Consensus 290 ------~~l~i~~~~~~g-----~a~E~i~~-------~~--~Ge~~~I~FN~~yLld~L~~~~~--~~v~l~~~~~~~p 347 (371)
T 3t0p_A 290 ------GNMELRINSFIG-----SMNEDIDI-------DK--DGKDIMIGFNPKFFIDALRVIDE--EEVNLYMVNPKAP 347 (371)
T ss_dssp ------TEEEEEEECSSE-----EEEEEEEC-------EE--EECCEEEEECHHHHHHHHTTCCC--SEEEEEESCTTSC
T ss_pred ------CEEEEEEeCCCC-----cEEEEEEE-------Ee--cCCcEEEEEchHHHHHHHhCCCC--CeEEEEECCCCCc
Confidence 367777653211 11222221 24 37899999999999888877763 5899999999999
Q ss_pred EEEeeeccCCCCCCCceEEEEEEEeccc
Q 038865 257 ILMAPKFGLDDGSGSNFDATLVLATMLV 284 (345)
Q Consensus 257 l~~~~~f~l~d~~~~~~~a~fvLAT~~~ 284 (345)
+++++ ++ . ...++++|+.-
T Consensus 348 ~~i~~----~~---~--~~~~lvMPvrl 366 (371)
T 3t0p_A 348 CFIKD----DE---G--KFIYLILPVNF 366 (371)
T ss_dssp EEEEC----TT---S--CEEEEECCCCC
T ss_pred EEEEc----CC---C--CeEEEEcceec
Confidence 99873 33 2 45889999864
No 26
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=98.28 E-value=2.2e-06 Score=74.62 Aligned_cols=84 Identities=23% Similarity=0.383 Sum_probs=60.6
Q ss_pred ccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHHHHHHHhhhccCCCeEEEEeeCCCCc
Q 038865 177 ASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELKAFLSFCEGCEVDIHLFFDKAGEP 256 (345)
Q Consensus 177 ~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefkail~fae~~~~~i~i~f~~~G~P 256 (345)
.||+|...|.++...+..++ +|-.++. +++|++.+|+|+||+.|...+ .++-.|++.|+ .+.|
T Consensus 86 ~Gd~g~~~i~l~~~~~~~~~--------------~~~~~i~-~~~~~~~~fsl~yl~~~~ka~-~~s~~v~l~~~-~~~P 148 (169)
T 3l0w_B 86 DGDIGSGSVIIKPFVDMEHP--------------ETSIKLE-MDQPVDLTFGAKYLLDIIKGS-SLSDRVGIRLS-SEAP 148 (169)
T ss_dssp ECSSCEEEEEECCBCCSSCG--------------GGCBEEE-ESSCEEEEEEHHHHHHHGGGG-GGCSEEEEEEC-SSSC
T ss_pred cCcccceeEEEecCCCCCCc--------------ccceEEe-cCCcceEEEhHHHHHHHhccc-cCCCeEEEEEc-CCCC
Confidence 57888888988876543321 1222222 467999999999996665433 34568999999 5599
Q ss_pred EEEeeeccCCCCCCCceEEEEEEEeccc
Q 038865 257 ILMAPKFGLDDGSGSNFDATLVLATMLV 284 (345)
Q Consensus 257 l~~~~~f~l~d~~~~~~~a~fvLAT~~~ 284 (345)
+.++ |.++. + .+.|+|||+.+
T Consensus 149 l~~~--~~~~~----g-~~~~~lAPri~ 169 (169)
T 3l0w_B 149 ALFQ--FDLKS----G-FLQFFLAPKFN 169 (169)
T ss_dssp EEEE--EEETT----E-EEEEEECCCCC
T ss_pred EEEE--EEECC----E-EEEEEEccccC
Confidence 9999 88863 2 78999999874
No 27
>3p16_A DNA polymerase III subunit beta; DNA polymerase III sliding clamp, transferase; HET: DNA; 2.89A {Mycobacterium tuberculosis} PDB: 3rb9_A*
Probab=97.88 E-value=0.0026 Score=62.53 Aligned_cols=194 Identities=13% Similarity=0.163 Sum_probs=133.4
Q ss_pred eEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhcCCCCccceEEEEecCCC----CC
Q 038865 26 ELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLRTPTASIDNLTVQLPNSD----AP 101 (345)
Q Consensus 26 el~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk~~~~~vd~~~i~l~d~d----~~ 101 (345)
-++|++.+++|.+-|.|.-|-|+..+.+.+... .....+-|..|.|.-+.|-. ...+.+.|.+.+.. +.
T Consensus 172 Gv~~~~~~~~l~~VATDghRLA~~~~~~~~~~~------~~~~~~iIP~k~l~el~kll-~~~~~V~i~~~~~~~~~~~~ 244 (408)
T 3p16_A 172 GIRVEILGETVVLAATDRFRLAVRELKWSASSP------DIEAAVLVPAKTLAEAAKAG-IGGSDVRLSLGTGPGVGKDG 244 (408)
T ss_dssp EEEEEEETTEEEEEEECSSEEEEEEEECBCSSS------SCEEEEEEEHHHHHHHHHTC-CSSSCEEEESCSSSSCCSSC
T ss_pred EEEEEEECCEEEEEEcCcceEEEEeccccccCC------CCceeEEEEHHHHHHHHHhc-CCCCcEEEEEcCCcccccce
Confidence 589999999999999999999999888765321 11356788899988888874 34578899884211 13
Q ss_pred eEEEEEEeCCCeEEEEEeeeccc--CcccccccCCCCCceEEEEcchhHHHHHhhhcCC---cceEEEEEcCCCCCCCCc
Q 038865 102 KVQWTLKCYNGMKKAYWITCNVE--PDIQHLSLDRRRFPSNFVVRPRDLNRLLSNFQSS---LQEITVIATEPTSLPSDA 176 (345)
Q Consensus 102 ~L~~~l~c~~gI~Kt~~L~~~~~--~~~~~~~~~~~~~~~~l~i~~~~L~~~l~~F~~~---~eeItl~~t~~~~~~s~~ 176 (345)
.+.|++ . ++. +..++.+. ++..+ .+|+ .+++.++++.+.|.+.|+..... ..-|.|.+++
T Consensus 245 ~i~f~~--~-~~~--~~srLIdG~fPdy~~-vIP~-~~~~~v~v~r~~l~~al~Rvslls~~~~~V~l~~~~-------- 309 (408)
T 3p16_A 245 LLGISG--N-GKR--STTRLLDAEFPKFRQ-LLPT-EHTAVATMDVAELIEAIKLVALVADRGAQVRMEFAD-------- 309 (408)
T ss_dssp CCEEEC--S-SEE--EECCCCSSCCCCGGG-TCCS-SCSEEEEEEHHHHHHHHHHHHTTCCSSCCEEEEEET--------
T ss_pred EEEEEE--C-CEE--EEEEecccCCCChhh-hCCC-CCCEEEEEEHHHHHHHHHHHHhhhcCCceEEEEEeC--------
Confidence 555553 2 233 33333431 12222 3564 68899999999999999876543 2347777764
Q ss_pred ccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCceEEEEEhHHHHHHHhhhccCCCeEEEEeeCCCCc
Q 038865 177 ASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDPVDVTFGVKELKAFLSFCEGCEVDIHLFFDKAGEP 256 (345)
Q Consensus 177 ~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~~~itF~LKefkail~fae~~~~~i~i~f~~~G~P 256 (345)
+.+.+.+...+.. ...-+|.+ +| .|++.+|.|+.|||..+|.-.+ +..|.+.|..+.+|
T Consensus 310 ------~~l~i~a~~~e~g----~a~E~i~~-------~~--~Ge~l~I~FN~~YLlD~L~~i~--~e~V~l~~~~~~~P 368 (408)
T 3p16_A 310 ------GSVRLSAGADDVG----RAEEDLVV-------DY--AGEPLTIAFNPTYLTDGLSSLR--SERVSFGFTTAGKP 368 (408)
T ss_dssp ------TEEEEEEECSSSC----EEEEEEEC-------EE--EESCCEEEECHHHHHHHHHHSC--SSEEEEEESCTTSC
T ss_pred ------CEEEEEEeCCCCc----eEEEEEEE-------EE--eCCcEEEEEeHHHHHHHHhccC--CCeEEEEECCCCCc
Confidence 3677777643221 11122221 24 3789999999999988888777 36899999999999
Q ss_pred EEEeee
Q 038865 257 ILMAPK 262 (345)
Q Consensus 257 l~~~~~ 262 (345)
+++++.
T Consensus 369 ~~i~~~ 374 (408)
T 3p16_A 369 ALLRPV 374 (408)
T ss_dssp EEEEEE
T ss_pred EEEEeC
Confidence 999863
No 28
>1vpk_A DNA polymerase III, beta subunit; TM0262, structural genomic center for structural genomics, JCSG, protein structure INI PSI, transferase; HET: DNA; 2.00A {Thermotoga maritima} SCOP: d.131.1.1 d.131.1.1 d.131.1.1
Probab=97.42 E-value=0.056 Score=52.20 Aligned_cols=200 Identities=10% Similarity=0.093 Sum_probs=132.1
Q ss_pred CeeEEecccHHHHHHHHHHHhhcC---------ceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEE
Q 038865 1 MEFAVSGNALKTFARCLACLSRIG---------NELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCS 71 (345)
Q Consensus 1 M~~~l~~~~~k~f~rai~~Lskig---------del~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~ 71 (345)
|+|+++.. .|.++|+-.+++. .-++|++.+++|.|.|.|.-+++...+... . . .. +-.+-
T Consensus 13 ~~~~i~~~---~L~~~l~~v~~av~~~~t~piL~gvll~~~~~~L~l~aTD~~~~~~~~i~~~-----~-~-~~-~g~i~ 81 (378)
T 1vpk_A 13 MKVTVTTL---ELKDKITIASKALAKKSVKPILAGFLFEVKDGNFYICATDLETGVKATVNAA-----E-I-SG-EARFV 81 (378)
T ss_dssp EEEEEEHH---HHHHHHHHHGGGCCCSSSCGGGGEEEEEEETTEEEEEEECSSEEEEEECCCS-----E-E-EE-CEEEE
T ss_pred EEEEEEHH---HHHHHHHHHHhhcCCCCChhHhCCEEEEEECCEEEEEEEcCceEEEEEEEEE-----E-c-cC-ceEEE
Confidence 66777654 4567777777763 348999999999999999999998876431 1 0 11 24688
Q ss_pred EEchhhHHHhcCCCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHH
Q 038865 72 VLLKAVCAVLRTPTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRL 151 (345)
Q Consensus 72 i~~Ksll~vfk~~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~ 151 (345)
|..|.+..+.|.+. . +.++|.+. +++ +.+.|.+ .+|.++..+.. +-+.+++......+.++...|+++
T Consensus 82 vpak~l~ei~r~Lp-~-~~V~i~~~---~~~--l~i~~g~---~~f~l~~l~~~--~fP~~~~~~~~~~~~i~~~~L~~~ 149 (378)
T 1vpk_A 82 VPGDVIQKMVKVLP-D-EITELSLE---GDA--LVISSGS---TVFRITTMPAD--EFPEITPAESGITFEVDTSLLEEM 149 (378)
T ss_dssp EEC-CHHHHHTTCC-S-SEEEEEEE---TTE--EEEEETT---EEEEEECBCCT--TSCCCCCCCSSEEEEEEHHHHHHH
T ss_pred EEhHHHHHHHHhCC-C-CcEEEEEe---CCE--EEEEECC---EEEEEcccChH--HCCCCCCCCCceEEEECHHHHHHH
Confidence 99999999999953 2 46788773 234 5555664 57888876432 333455555678999999999999
Q ss_pred Hhhhc--CCcce-------EEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCc
Q 038865 152 LSNFQ--SSLQE-------ITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDP 222 (345)
Q Consensus 152 l~~F~--~~~ee-------Itl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~ 222 (345)
++.-. .+.++ |.|.+.+ +.+.+.+-. +.+-...++.+.. ..+
T Consensus 150 I~r~~~a~s~~e~r~~l~GV~l~~~~--------------~~l~~vAtD-----g~rla~~~~~~~~---------~~~- 200 (378)
T 1vpk_A 150 VEKVIFAAAKDEFMRNLNGVFWELHK--------------NLLRLVASD-----GFRLALAEEQIEN---------EEE- 200 (378)
T ss_dssp HHHHGGGSCCCTTCTTTSEEEEEEET--------------TEEEEEEEC-----SSEEEEEEEECCC---------CSC-
T ss_pred HhheEEEEECCCCcceeeEEEEEEEC--------------CEEEEEEeC-----cccEEEEEEecCC---------CCc-
Confidence 97654 33443 7777654 245554431 1111112222211 122
Q ss_pred eEEEEEhHHHHHHHhhhccCCC-eEEEEeeC
Q 038865 223 VDVTFGVKELKAFLSFCEGCEV-DIHLFFDK 252 (345)
Q Consensus 223 ~~itF~LKefkail~fae~~~~-~i~i~f~~ 252 (345)
.++.+.-|.++.++...+..+. .|.++|+.
T Consensus 201 ~~~iip~k~l~el~k~L~~~~~~~V~i~~~~ 231 (378)
T 1vpk_A 201 ASFLLSLKSMKEVQNVLDNTTEPTITVRYDG 231 (378)
T ss_dssp EEEEEEHHHHHHHHHHHHTCCCSEEEEEECS
T ss_pred ceEEEEchHHHHHHHhhccCCCceEEEEEcC
Confidence 6899999999998888876556 89999874
No 29
>3a1j_C Cell cycle checkpoint protein RAD1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_B 3ggr_C
Probab=96.97 E-value=0.02 Score=52.67 Aligned_cols=113 Identities=13% Similarity=0.237 Sum_probs=89.4
Q ss_pred cchhHHHHHhhhcCCcceEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCc-
Q 038865 144 RPRDLNRLLSNFQSSLQEITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDP- 222 (345)
Q Consensus 144 ~~~~L~~~l~~F~~~~eeItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~- 222 (345)
+++.|+++++-. ...+++++.++++ .+.++.-. .+.+...+.|..+ -|++|. ..++
T Consensus 11 ~a~~l~~il~ai-~l~~ea~~~~s~~--------------Gi~l~a~D------s~v~~v~l~l~~~-~F~~Y~-~~~~~ 67 (263)
T 3a1j_C 11 NVRNLSTILKAI-HFREHATCFATKN--------------GIKVTVEN------AKCVQANAFIQAG-IFQEFK-VQEES 67 (263)
T ss_dssp CTHHHHHHHHTT-CSSSEEEEEEETT--------------EEEEEEEE------TTTEEEEEEEEGG-GSSEEE-ESSSC
T ss_pred CHHHHHHHHhhe-ecCcEEEEEEcCC--------------eEEEEEEe------CCEEEEEEEECHH-HCceEE-EcCCC
Confidence 789999999999 8889999999985 45565542 2457788999886 899998 4555
Q ss_pred eEEEEEhHHHHHHHhhhccC----C-CeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEeccccc
Q 038865 223 VDVTFGVKELKAFLSFCEGC----E-VDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATMLVSQ 286 (345)
Q Consensus 223 ~~itF~LKefkail~fae~~----~-~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~~~~ 286 (345)
..+..+|+.|..+|..+..- . ..+.+.+..+|.|+.+. |. + ++...+|-|.|+..++
T Consensus 68 ~~~gi~l~~l~k~L~~~~~~~~~~d~~~l~i~~~~~~~~l~l~--~e--~---~~~~~~~~l~~~~~~~ 129 (263)
T 3a1j_C 68 VTFRINLTVLLDCLSIFGSSPMPGTLTALRMCYQGYGYPLMLF--LE--E---GGVVTVCKINTQEPEE 129 (263)
T ss_dssp EEEEEEHHHHHHHHTTTCSCCCTTCCCEEEEEECSTTCCEEEE--EE--E---TTEEEEEEECCBCCCC
T ss_pred cEEEEEhHHHHHHHHHhcCCcCCCCceEEEEEECCCCCcEEEE--EE--e---CCeEEEEEEEEEcCCc
Confidence 89999999999999999764 2 56777688889999987 32 2 2456789999987764
No 30
>3fds_C DNA polymerase sliding clamp B; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2io4_A* 2nti_D* 2hii_A 2hik_A 2ix2_A* 2izo_C*
Probab=96.97 E-value=0.017 Score=52.82 Aligned_cols=120 Identities=17% Similarity=0.213 Sum_probs=90.7
Q ss_pred EEE-cchhHHHHHhhhcCCcceEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeeccc
Q 038865 141 FVV-RPRDLNRLLSNFQSSLQEITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHS 219 (345)
Q Consensus 141 l~i-~~~~L~~~l~~F~~~~eeItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~ 219 (345)
.++ +++.|+++++-...-.+|++|.++++ .+.++.-. +.+.....+.|..+ -|++|. +
T Consensus 4 a~~~~a~~lk~ii~ai~~lv~e~~~~~~~~--------------Gi~l~amD-----~s~valv~l~l~~~-~F~~Y~-~ 62 (249)
T 3fds_C 4 IVYPNAKDFFSFINSITNVTDSIILNFTED--------------GIFSRHLT-----EDKVLMAIMRIPKD-VLSEYS-I 62 (249)
T ss_dssp EEESCHHHHHHHHHHHTTTCSSEEEEECSS--------------EEEEEEEC-----TTSSEEEEEEEEGG-GSSEEE-C
T ss_pred EEeCchHHHHHHHHHHHHHhCeEEEEEcCC--------------eEEEEEEC-----CCcEEEEEEEECHH-hCeEEE-C
Confidence 445 68999999999999999999999974 46666553 34456678888875 799998 6
Q ss_pred CCceEEEEEhHHHHHHHhhhccCCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEeccccccc
Q 038865 220 GDPVDVTFGVKELKAFLSFCEGCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATMLVSQLQ 288 (345)
Q Consensus 220 ~~~~~itF~LKefkail~fae~~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~~~~~~ 288 (345)
.+++.+..+|+.|..+|.-+.+-+ + ++.++..+.+|.+. |. +. .++...+|.|-.+..++.+
T Consensus 63 d~~~~~gvnl~~l~kiLk~~~~~~-d-~l~~~~~~~~l~i~--~e--~~-~~~~~~~~~l~l~d~~~e~ 124 (249)
T 3fds_C 63 DSPTSVKLDVSSVKKILSKASSKK-A-TIELTETDSGLKII--IR--DE-KSGAKSTIYIKAEKGQVEQ 124 (249)
T ss_dssp SSCEEEEECHHHHHHHHTTCCCSC-E-EEEEEECSSEEEEE--EE--ET-TTCCEEEEEEECEECCCCC
T ss_pred CCCeEEEEEHHHHHHHHHhhCCCC-C-EEEEecCCCEEEEE--EE--eC-CCCEEEEEEEECCCCcccc
Confidence 788999999999999999998322 2 77777788999887 32 21 1245778888877665433
No 31
>3p91_A Proliferating cell nuclear antigen; DNA binding protein, DNA replication, processivity, sliding; 2.40A {Entamoeba histolytica}
Probab=96.86 E-value=0.038 Score=50.78 Aligned_cols=119 Identities=12% Similarity=0.252 Sum_probs=89.0
Q ss_pred EEEE-cchhHHHHHhhhcCCcceEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecc
Q 038865 140 NFVV-RPRDLNRLLSNFQSSLQEITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTH 218 (345)
Q Consensus 140 ~l~i-~~~~L~~~l~~F~~~~eeItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~ 218 (345)
+.++ +++.|+++++-.....+++.|.++++ .+.++.-. ..+.....+.|..+ .|++|.
T Consensus 8 ~a~~~~a~~lk~ii~ai~~i~~~v~~~~~~~--------------gl~~~A~D-----~~rvalv~~~l~~~-~F~~y~- 66 (265)
T 3p91_A 8 HAKFKEAALFKRVVESLKSTIDKTNFDCSDA--------------GIAVQCMD-----NSHVSLVSLLIETD-AFDEFQ- 66 (265)
T ss_dssp EEEESCHHHHHHHHHHHHTTCSEEEEEEETT--------------EEEEEEEC-----TTSSSEEEEEECGG-GEEEEE-
T ss_pred EEEECchHHHHHHHHHHHHHhceEEEEEeCC--------------eEEEEEEC-----CCcEEEEEEEEChh-hceEEE-
Confidence 3444 68999999999999999999999874 46665542 23345567888765 799997
Q ss_pred cCCceEEEEEhHHHHHHHhhhccCCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEeccccc
Q 038865 219 SGDPVDVTFGVKELKAFLSFCEGCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATMLVSQ 286 (345)
Q Consensus 219 ~~~~~~itF~LKefkail~fae~~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~~~~ 286 (345)
+.+++.+..+|++|..++.-+.. +-.+.+.++..|.+|.|. |. +.+ .+ ..+|.+-.+..+.
T Consensus 67 ~d~~~~igi~l~~L~kiLk~~~~-~d~v~i~~~~~~~~l~~~--~e--~~~-~~-~i~~~lrLid~~~ 127 (265)
T 3p91_A 67 CLKPITLGINLTHLSKILKALDN-DCGLILDVKKVDDAVLSI--TS--EGT-NK-TMKFGLNLVDIEA 127 (265)
T ss_dssp CSSCEEEEEEHHHHHHHHTTSCT-TSEEEEEECSSSSEEEEE--EE--C---CC-EEEEEEECCCCCC
T ss_pred eCCCeEEEEEHHHHHHHHhhcCC-CCEEEEEEcCCCCeEEEE--EE--eCC-Cc-eEEEEEEecccCc
Confidence 66788999999999999988763 567999999888999987 32 221 12 2388888877654
No 32
>3p16_A DNA polymerase III subunit beta; DNA polymerase III sliding clamp, transferase; HET: DNA; 2.89A {Mycobacterium tuberculosis} PDB: 3rb9_A*
Probab=96.35 E-value=0.86 Score=44.49 Aligned_cols=201 Identities=14% Similarity=0.136 Sum_probs=126.7
Q ss_pred CeeEEecccHHHHHHHHHHHhhcCc---------eEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEE
Q 038865 1 MEFAVSGNALKTFARCLACLSRIGN---------ELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCS 71 (345)
Q Consensus 1 M~~~l~~~~~k~f~rai~~Lskigd---------el~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~ 71 (345)
|+|+++- ..|.++|+.++++.+ .+.|++.+++|.|.+-|.--+.-..+.- ++.. +=.+-
T Consensus 19 Mkf~i~r---~~L~~aL~~v~~~v~~r~t~PIL~~ili~a~~~~L~ltatDlei~i~~~i~a--------~v~e-~G~i~ 86 (408)
T 3p16_A 19 LTFRLLR---ESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGA--------EIVS-PGSVL 86 (408)
T ss_dssp CEEEEEH---HHHHHHHHHHTTSSCSCCSSGGGSEEEEEECSSEEEEEECCSSCCEEEEEEC--------CCSB-CEEEE
T ss_pred eEEEEEH---HHHHHHHHHHHhhhCCCCChHHhCcEEEEEECCEEEEEEECCceEEEEEEEE--------EecC-CeEEE
Confidence 7888764 567899999999987 9999999999999999987666555432 1222 35688
Q ss_pred EEchhhHHHhcCCCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHH
Q 038865 72 VLLKAVCAVLRTPTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRL 151 (345)
Q Consensus 72 i~~Ksll~vfk~~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~ 151 (345)
|+.|-+..+.|.+. . +.++|++. .+++.+ .|.+ ..|+|+..+..+. +.++... ...+.+++..|+++
T Consensus 87 v~ak~l~dIvr~Lp-~-~~I~l~~~---~~~l~I--~~g~---s~f~L~~l~~~df--P~lp~~~-~~~~~i~~~~L~~~ 153 (408)
T 3p16_A 87 VSGRLLSDITRALP-N-KPVDVHVE---GNRVAL--TCGN---ARFSLPTMPVEDY--PTLPTLP-EETGLLPAELFAEA 153 (408)
T ss_dssp EEHHHHHHHHHHSC-S-SEEEEEEE---TTEEEE--EBTT---EEEEEEEECTTTS--CCCCCCC-CEEEEECHHHHHHH
T ss_pred EEHHHHHHHHHhCC-C-CcEEEEEe---CCEEEE--EECC---EEEEEecCCHHHC--CCCCCCC-CcEEEEcHHHHHHH
Confidence 99999999999853 2 34777763 355554 4765 4788887653332 2333322 23789999999999
Q ss_pred Hhhh--cCCcce-------EEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCc
Q 038865 152 LSNF--QSSLQE-------ITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDP 222 (345)
Q Consensus 152 l~~F--~~~~ee-------Itl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~ 222 (345)
++.- ..+.+| |-|++.+ +.+.+-+- |+.+--..++.+... ..+.+
T Consensus 154 I~~t~fA~s~de~rp~L~Gv~~~~~~--------------~~l~~VAT-----DghRLA~~~~~~~~~-------~~~~~ 207 (408)
T 3p16_A 154 ISQVAIAAGRDDTLPMLTGIRVEILG--------------ETVVLAAT-----DRFRLAVRELKWSAS-------SPDIE 207 (408)
T ss_dssp HHHHTTSSCCSSSCCCSCEEEEEEET--------------TEEEEEEE-----CSSEEEEEEEECBCS-------SSSCE
T ss_pred HhhheecccCccchhhceEEEEEEEC--------------CEEEEEEc-----CcceEEEEecccccc-------CCCCc
Confidence 9764 333333 3333322 12222111 211211122332211 01123
Q ss_pred eEEEEEhHHHHHHHhhhccCCCeEEEEeeCC
Q 038865 223 VDVTFGVKELKAFLSFCEGCEVDIHLFFDKA 253 (345)
Q Consensus 223 ~~itF~LKefkail~fae~~~~~i~i~f~~~ 253 (345)
..+...-|.+..+....+. +.+|.++++..
T Consensus 208 ~~~iIP~k~l~el~kll~~-~~~V~i~~~~~ 237 (408)
T 3p16_A 208 AAVLVPAKTLAEAAKAGIG-GSDVRLSLGTG 237 (408)
T ss_dssp EEEEEEHHHHHHHHHTCCS-SSCEEEESCSS
T ss_pred eeEEEEHHHHHHHHHhcCC-CCcEEEEEcCC
Confidence 5789999998887776543 56899999853
No 33
>3t0p_A DNA polymerase III, beta subunit; DNA clamp, structural genomics, joint center for structural JCSG, protein structure initiative; HET: DNA MSE; 2.26A {Eubacterium rectale}
Probab=96.28 E-value=0.87 Score=43.80 Aligned_cols=207 Identities=13% Similarity=0.139 Sum_probs=128.6
Q ss_pred CeeEEecccHHHHHHHHHHHhhcC---------ceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEE
Q 038865 1 MEFAVSGNALKTFARCLACLSRIG---------NELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCS 71 (345)
Q Consensus 1 M~~~l~~~~~k~f~rai~~Lskig---------del~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~ 71 (345)
|+|+++- ..|.++|+.++++. .-+.|++.+++|.|.+-|.--+.-..+ +. ++.. +=.+-
T Consensus 2 Mkf~i~r---~~L~~~l~~v~~~v~~r~t~pIL~~ili~a~~~~L~ltatD~ei~i~~~i--~a------~v~~-~G~~~ 69 (371)
T 3t0p_A 2 MKLICSK---ANLLKGVNIVSKAVPTRTTMAILECILIDASANEIKLMANDMELGIETII--DG------TIEE-RGIIA 69 (371)
T ss_dssp CEEEEEH---HHHHHHHHHHGGGSCSSCSSGGGGEEEEEESSSSEEEEEECSSEEEEEEE--CC------EEEE-CEEEE
T ss_pred eEEEEEH---HHHHHHHHHHHhhcCCCCChHHhCCEEEEEECCEEEEEEeCcEEEEEEEE--EE------EEcc-CeEEE
Confidence 8888865 45789999999886 479999999999999999765554443 22 2222 24688
Q ss_pred EEchhhHHHhcCCCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHH
Q 038865 72 VLLKAVCAVLRTPTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRL 151 (345)
Q Consensus 72 i~~Ksll~vfk~~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~ 151 (345)
|+.|-+..+.|.+.. +.++|++. +..++.++ |.+ ..|+|+..+..+ -+.++.......+.+++..|+++
T Consensus 70 v~ak~l~divr~Lp~--~~i~l~~~--~~~~l~I~--~g~---s~f~l~~~~~~d--fP~lp~~~~~~~~~i~~~~L~~~ 138 (371)
T 3t0p_A 70 LDAKIFSEIVRKLPD--NDVTIETD--ASFKTVIS--CEK---AKFNIIGKSGDD--FSYIPYVERNESIVLSQFTLKEV 138 (371)
T ss_dssp EEHHHHHHHHHHSCS--SEEEEEEC--TTCEEEEE--ETT---EEEEEECBCGGG--SCCCCCCCCCSEEEEEHHHHHHH
T ss_pred EEHHHHHHHHHhCCC--CcEEEEEC--CCCeEEEE--ECC---EEEEEccCCHHH--CCCCCCCCCCeEEEECHHHHHHH
Confidence 999999999998532 24778773 33455554 765 478888765322 23445444457899999999999
Q ss_pred Hhhh--cCCcce-------EEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCc
Q 038865 152 LSNF--QSSLQE-------ITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDP 222 (345)
Q Consensus 152 l~~F--~~~~ee-------Itl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~ 222 (345)
++.- ..+.+| |-|.+.+ +.+.+-+- |+.+--..++.+... .++
T Consensus 139 I~~t~fA~s~de~r~~L~Gv~~~~~~--------------~~l~~vAT-----Dg~RLa~~~~~~~~~---------~~~ 190 (371)
T 3t0p_A 139 IRQTIFSIADNDNNKLMTGELFEIEE--------------NKLRVVSL-----DGHRISIRYIEMKNH---------YDS 190 (371)
T ss_dssp HHTTGGGSCSSSSSTGGGEEEEEEEE--------------EEEEEEEE-----CSSEEEEEEEEEEEE---------EEE
T ss_pred HhheeEEeeCCCCchhceEEEEEEEC--------------CEEEEEEe-----cceEEEEEEeccCCC---------CCc
Confidence 9764 333333 3333321 12222221 111111112222210 123
Q ss_pred eEEEEEhHHHHHHHhhhc-cCCCeEEEEeeCCCCcEEEe
Q 038865 223 VDVTFGVKELKAFLSFCE-GCEVDIHLFFDKAGEPILMA 260 (345)
Q Consensus 223 ~~itF~LKefkail~fae-~~~~~i~i~f~~~G~Pl~~~ 260 (345)
..+...-|-+..+..+.. ....+|.++++. .=+.|+
T Consensus 191 ~~~iIP~k~l~el~kll~~~~~~~V~i~~~~--~~i~f~ 227 (371)
T 3t0p_A 191 KKVVVPGKTLQEISKIIPGSADEDVVIYITN--NHIVFE 227 (371)
T ss_dssp EEEEEEHHHHHHHHHHCCCCTTSEEEEEEET--TEEEEE
T ss_pred eEEEEEHHHHHHHHHhcCcCCCceEEEEEcC--CEEEEE
Confidence 468898888888777765 345789999984 334443
No 34
>3d1g_A DNA polymerase III subunit beta; chemical probe, DNA sliding clamp, DNA replication, rational drug design, antibiotic target, transferase; HET: DNA 322; 1.64A {Escherichia coli} SCOP: d.131.1.1 d.131.1.1 d.131.1.1 PDB: 1mmi_A* 1unn_A* 2pol_A* 3bep_A* 3d1e_A* 3d1f_A* 1ok7_A* 3q4j_A* 3q4k_A* 3qsb_A* 3q4l_A* 2xur_A* 1jql_A* 1jqj_A* 3f1v_A* 3pwe_A*
Probab=96.16 E-value=0.98 Score=43.28 Aligned_cols=138 Identities=14% Similarity=0.174 Sum_probs=94.8
Q ss_pred CeeEEecccHHHHHHHHHHHhhcCc---------eEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEE
Q 038865 1 MEFAVSGNALKTFARCLACLSRIGN---------ELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCS 71 (345)
Q Consensus 1 M~~~l~~~~~k~f~rai~~Lskigd---------el~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~ 71 (345)
|+|+++-. .|.++|+.++++.+ -+.|++.+++|.|.+-|.--+.-..+. .. ++.. +=.+-
T Consensus 1 Mkf~i~~~---~L~~~l~~v~~~v~~r~t~piL~~ili~a~~~~L~l~atD~ei~i~~~i~--~~-----~v~~-~G~~~ 69 (366)
T 3d1g_A 1 MKFTVERE---HLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVA--LV-----QPHE-PGATT 69 (366)
T ss_dssp CEEEEEHH---HHHHHHHHHSTTCSSCCCSGGGGEEEEEEETTEEEEEEECSSEEEEEEEE--CC-----SCCB-CEEEE
T ss_pred CEEEEEHH---HHHHHHHHHHhhcCCCCChhHhcCeEEEEeCCcEEEEEecceEEEEEEEE--cc-----eecc-CeEEE
Confidence 88888764 56788888888854 589999999999999998755544442 20 1222 34688
Q ss_pred EEchhhHHHhcCCCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHH
Q 038865 72 VLLKAVCAVLRTPTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRL 151 (345)
Q Consensus 72 i~~Ksll~vfk~~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~ 151 (345)
|+.|-+..+.|.+. +-+.++|++. .++ +++.|.+ ..|+|+..+.. +-+.++.......+.+++..|+++
T Consensus 70 v~ak~l~divr~Lp-~~~~i~~~~~---~~~--l~I~~g~---s~f~l~~~~~~--~fP~~~~~~~~~~~~i~~~~l~~~ 138 (366)
T 3d1g_A 70 VPARKFFDICRGLP-EGAEIAVQLE---GER--MLVRSGR---SRFSLSTLPAA--DFPNLDDWQSEVEFTLPQATMKRL 138 (366)
T ss_dssp EEHHHHHHHHHHSC-TTCEEEEEEE---TTE--EEEEETT---EEEEEECBCGG--GSCCCCCCCCSEEEEECHHHHHHH
T ss_pred EEhHHHHHHHHcCC-CCCcEEEEEe---CCE--EEEEECC---EEEEEcCCCHH--HCCCCCCCCCceEEEECHHHHHHH
Confidence 99999999999852 3336777763 234 5555775 57888876432 323444433346899999999999
Q ss_pred Hhh--hcCCcc
Q 038865 152 LSN--FQSSLQ 160 (345)
Q Consensus 152 l~~--F~~~~e 160 (345)
++. |..+.+
T Consensus 139 i~~t~fA~s~d 149 (366)
T 3d1g_A 139 IEATQFSMAHQ 149 (366)
T ss_dssp HHHHGGGSCSS
T ss_pred HhheeEEeccC
Confidence 985 444433
No 35
>3lx2_A DNA polymerase sliding clamp 2; PCNA, DNA processivity factor, trimer, toroidal, DNA replica DNA-binding, DNA binding protein; HET: DNA; 2.40A {Thermococcus kodakarensis}
Probab=95.79 E-value=0.24 Score=45.16 Aligned_cols=105 Identities=9% Similarity=0.067 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeC--ccCCceeeec-CCEEEEEEEchhhHHHhcCCCCc
Q 038865 11 KTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFM--PNFFDVYTVS-GAQVQCSVLLKAVCAVLRTPTAS 87 (345)
Q Consensus 11 k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~--~~FF~~Y~~~-~~~~~~~i~~Ksll~vfk~~~~~ 87 (345)
+.|.+++.-++-+++.+.|.++++++.+++-...-. +...|+ ++-...+++. + ++....++|.|..++|.. ..
T Consensus 139 ~~f~~~i~~~~~~sd~V~i~~~~~~v~~ss~gd~G~--~~~~l~~~~~~~~~~~~~~e-~~~~~F~~~YL~~~~Ka~-~~ 214 (259)
T 3lx2_A 139 GALKRAVKAAKLVSDSIYFMATPEKLTFKAEGNDSE--VRTVLTMEDPGLLDLEHKMT-KAKSAYGVAYLEDILRSL-AD 214 (259)
T ss_dssp HHHHHHHHHHHHHCSEEEEEECSSCEEEEEECSSCE--EEEEECTTSTTEEEEEESSS-CEEEEEEHHHHHHHHSSS-CT
T ss_pred HHHHHHHHHHHhcCCEEEEEEECCEEEEEEEecCcE--EEEEEcCCCCceEEEEecCc-eEEEEEEHHHHHhhhccc-cC
Confidence 889999999999999999999999999999654444 455554 4555667776 5 699999999999999983 34
Q ss_pred cceEEEEecCCCCCeEEEEEEeC-CCeEEEEEeee
Q 038865 88 IDNLTVQLPNSDAPKVQWTLKCY-NGMKKAYWITC 121 (345)
Q Consensus 88 vd~~~i~l~d~d~~~L~~~l~c~-~gI~Kt~~L~~ 121 (345)
-+++.|++. +..-|.+++.-. .|-.+-|-.|.
T Consensus 215 s~~V~l~~~--~~~Pl~l~~~i~~~g~~~y~laP~ 247 (259)
T 3lx2_A 215 ADEVIIRFG--FDIPLLLKYMVRDAGEVSFLIAPR 247 (259)
T ss_dssp TSEEEEEEC--TTSCEEEEEEETTTEEEEEEECCC
T ss_pred CCeEEEEeC--CCCCEEEEEEeCCCeEEEEEEccc
Confidence 578999984 345577776543 45444333343
No 36
>1u7b_A PCNA, cyclin, proliferating cell nuclear antigen; sliding clamp, DNA processing, FEN1, PIP- BOX, replication; 1.88A {Homo sapiens} SCOP: d.131.1.2 d.131.1.2 PDB: 1u76_A 1axc_A 1ul1_A 1vyj_A 1vym_A 1w60_A 2zvk_A* 2zvl_A* 2zvm_A* 3p87_A 3vkx_A*
Probab=95.63 E-value=0.34 Score=43.76 Aligned_cols=94 Identities=17% Similarity=0.174 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeC-------ccCCceeeecCCEEEEEEEchhhHHHhcC
Q 038865 11 KTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFM-------PNFFDVYTVSGAQVQCSVLLKAVCAVLRT 83 (345)
Q Consensus 11 k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~-------~~FF~~Y~~~~~~~~~~i~~Ksll~vfk~ 83 (345)
+.|.+++.-++-+++++.|.++++++.|++-. -.+-+...+. ++-+..|++.. ++....+.|.|..++|.
T Consensus 142 ~~l~~ai~r~~~~s~~v~i~~~~~~l~ls~~~--d~g~~~~~~~~~~~~~~~~~~~~~~~~e-~~~i~f~~~yL~~~lka 218 (261)
T 1u7b_A 142 GEFARICRDLSHIGDAVVISCAKDGVKFSASG--ELGNGNIKLSQTSNVDKEEEAVTIEMNE-PVQLTFALRYLNFFTKA 218 (261)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEETTEEEEEEEE--TTEEEEEEECCCC----CCSCCEEEESS-CEEEEEEHHHHHHHGGG
T ss_pred HHHHHHHHHHHhcCCEEEEEEECCEEEEEEEe--cCceEEEEEecCCCCCCCccceEEecCC-cEEEEEeHHHHHHHhCc
Confidence 78999999999999999999999999999953 5555667775 45666788765 59999999999999998
Q ss_pred CCCccceEEEEecCCCCCeEEEEEEeC
Q 038865 84 PTASIDNLTVQLPNSDAPKVQWTLKCY 110 (345)
Q Consensus 84 ~~~~vd~~~i~l~d~d~~~L~~~l~c~ 110 (345)
. .--+++.|++.+ ..-+.++..-.
T Consensus 219 ~-~~s~~V~i~~~~--~~P~~l~~~~~ 242 (261)
T 1u7b_A 219 T-PLSSTVTLSMSA--DVPLVVEYKIA 242 (261)
T ss_dssp G-GGCSEEEEEECT--TSCEEEEEEET
T ss_pred c-cCCCeEEEEECC--CCCEEEEEEeC
Confidence 4 225788898852 35577776443
No 37
>2avt_A DNA polymerase III beta subunit; beta clamp, sliding clamp, replication, transferase; HET: DNA; 2.00A {Streptococcus pyogenes} PDB: 2awa_A*
Probab=95.54 E-value=1.8 Score=41.57 Aligned_cols=215 Identities=14% Similarity=0.177 Sum_probs=124.8
Q ss_pred CeeEEecccHHHHHHHHHHHhhcC---------ceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEE
Q 038865 1 MEFAVSGNALKTFARCLACLSRIG---------NELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCS 71 (345)
Q Consensus 1 M~~~l~~~~~k~f~rai~~Lskig---------del~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~ 71 (345)
|+|+++-. .|.++|+.++++. .-+.|++.+++|.|.+-|.--+.-..+.-.-+ =....+.. +=.+-
T Consensus 2 Mkf~i~~~---~L~~~l~~v~~~v~~r~t~PiL~~ill~a~~~~L~ltatD~ei~i~~~i~~~~~-~~~~~v~~-~G~~~ 76 (378)
T 2avt_A 2 IQFSINRT---LFIHALNTTKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVSNE-NAGLLITS-PGAIL 76 (378)
T ss_dssp CEEEEEHH---HHHHHHHHHGGGCCSSCSSGGGGEEEEEEETTEEEEEEECSSEEEEEEEEC------CEEEEE-CEEEE
T ss_pred EEEEEEHH---HHHHHHHHHHhhcCCCCChhHhcCeEEEEECCEEEEEEECCeEEEEEEEecccc-cccceecc-CeEEE
Confidence 78888754 5678899998885 35999999999999999987555444421000 00011211 23578
Q ss_pred EEchhhHHHhcCCCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEEeeecccCcccccccCCCCCceEEEEcchhHHHH
Q 038865 72 VLLKAVCAVLRTPTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRDLNRL 151 (345)
Q Consensus 72 i~~Ksll~vfk~~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~L~~~ 151 (345)
|+.|-+..+.|.+. + +.++|+.. +.++ +++.|.+ -.|+|+..+.. +-+.++.......+.+++..|+++
T Consensus 77 v~ak~l~divr~Lp-~-~~v~~~~~--~~~~--l~I~~g~---s~f~l~~~~~~--~fP~l~~~~~~~~~~i~~~~l~~~ 145 (378)
T 2avt_A 77 LEASFFINIISSLP-D-ISINVKEI--EQHQ--VVLTSGK---SEITLKGKDVD--QYPRLQEVSTENPLILKTKLLKSI 145 (378)
T ss_dssp EEHHHHHHHHHHCS-S-SEEEEEEE--TTTE--EEEEETT---EEEEEECBCGG--GSCCCCCCCCSSCEEEEHHHHHHH
T ss_pred EEhHHHHHHHHhCC-C-CcEEEEEC--CCCE--EEEEECC---EEEEEccCCHH--HCCCCCCCCCCeEEEECHHHHHHH
Confidence 99999999999853 2 45777763 3344 4455765 47888876432 323444433346899999999999
Q ss_pred Hhh--hcCCcc-------eEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCc
Q 038865 152 LSN--FQSSLQ-------EITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDP 222 (345)
Q Consensus 152 l~~--F~~~~e-------eItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~ 222 (345)
++. |..+.+ .|.|.+.++ +.+.+.+- |+.+-...++.+... .++
T Consensus 146 i~~t~fA~s~de~r~~L~Gv~~~~~~~-------------~~l~~vAT-----Dg~RLa~~~~~~~~~---------~~~ 198 (378)
T 2avt_A 146 IAETAFAASLQESRPILTGVHIVLSNH-------------KDFKAVAT-----DSHRMSQRLITLDNT---------SAD 198 (378)
T ss_dssp HHHHGGGSCCCTTSGGGGEEEEEEETT-------------TEEEEEEE-----CSSEEEEEEEECSSC---------CCC
T ss_pred HhheEEEEECCCCcceeEEEEEEECCC-------------CeEEEEEe-----cCeeEEEEEeccCCC---------CCc
Confidence 985 433333 244544321 02222221 111111122222211 123
Q ss_pred eEEEEEhHHHHHHHhhhccCCCeEEEEeeCCCCcEEEe
Q 038865 223 VDVTFGVKELKAFLSFCEGCEVDIHLFFDKAGEPILMA 260 (345)
Q Consensus 223 ~~itF~LKefkail~fae~~~~~i~i~f~~~G~Pl~~~ 260 (345)
..+...-|-+..+..+.+..+..|.++++ +.=+.|.
T Consensus 199 ~~~iiP~k~l~el~kll~~~~~~v~i~~~--~~~i~f~ 234 (378)
T 2avt_A 199 FMVVLPSKSLREFSAVFTDDIETVEVFFS--PSQILFR 234 (378)
T ss_dssp EEEEEEHHHHHHHHHHSCTTCCEEEEEEC--SSEEEEE
T ss_pred cEEEEEhHHHHHHHHhcccCCceEEEEEc--CCEEEEE
Confidence 45677777776666665533567888886 2345443
No 38
>1plq_A Proliferating cell nuclear antigen (PCNA); DNA-binding, nuclear protein, DNA replication, processivity; 2.30A {Saccharomyces cerevisiae} SCOP: d.131.1.2 d.131.1.2 PDB: 1plr_A 2od8_A* 1sxj_F* 3f1w_A 3v60_B 3v61_B 3v62_B* 3gpn_A 3gpm_A 3l0w_A 3l0x_A 3l10_A 3pge_B 3l0x_B
Probab=95.46 E-value=0.43 Score=43.02 Aligned_cols=96 Identities=13% Similarity=0.200 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeC-------ccCCceeeecCCEEEEEEEchhhHHHhcC
Q 038865 11 KTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFM-------PNFFDVYTVSGAQVQCSVLLKAVCAVLRT 83 (345)
Q Consensus 11 k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~-------~~FF~~Y~~~~~~~~~~i~~Ksll~vfk~ 83 (345)
+.|.+++.-++-+++++.|.++++++.|++-. -.+-+...|+ ++-+..|++.. ++....+.|.|..++|.
T Consensus 142 ~~l~~av~r~~~~s~~v~i~~~~~~l~ls~~~--d~g~~~~~l~~~~~~~~~~~~~~~~~ge-~~~i~f~~~yL~~~lka 218 (258)
T 1plq_A 142 SEFSKIVRDLSQLSDSINIMITKETIKFVADG--DIGSGSVIIKPFVDMEHPETSIKLEMDQ-PVDLTFGAKYLLDIIKG 218 (258)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEETTEEEEEEEC--SSCEEEEEECCBCCTTCGGGCBEEEESS-CEEEEEEHHHHHHHGGG
T ss_pred HHHHHHHHHHHhcCCEEEEEEECCEEEEEEEc--cCceEEEEEecCCCCCCCccceEEecCC-cEEEEEEHHHHHHHhcc
Confidence 88999999999999999999999999999954 4444566665 45556688765 59999999999999998
Q ss_pred CCCccceEEEEecCCCCCeEEEEEEeCCC
Q 038865 84 PTASIDNLTVQLPNSDAPKVQWTLKCYNG 112 (345)
Q Consensus 84 ~~~~vd~~~i~l~d~d~~~L~~~l~c~~g 112 (345)
. .--+++.|++. +..-+.++..-..|
T Consensus 219 ~-~~s~~V~i~~~--~~~Pl~l~~~~~~~ 244 (258)
T 1plq_A 219 S-SLSDRVGIRLS--SEAPALFQFDLKSG 244 (258)
T ss_dssp G-GTCSEEEEEEC--SSSCEEEEEEETTE
T ss_pred c-cCCceEEEEEC--CCCCEEEEEEECCe
Confidence 4 22578888884 33557777644444
No 39
>1iz5_A Proliferating cell nuclear antigen; DNA, replication, processivity, sliding clamp, DNA binding protein; 1.80A {Pyrococcus furiosus} SCOP: d.131.1.2 d.131.1.2 PDB: 3a2f_B* 1iz4_A 1ge8_A 1isq_A 3lx1_A*
Probab=95.38 E-value=0.75 Score=41.19 Aligned_cols=97 Identities=7% Similarity=0.083 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhcCCCCccc
Q 038865 10 LKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLRTPTASID 89 (345)
Q Consensus 10 ~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk~~~~~vd 89 (345)
-+.|.+++.-++-+++++.|.+++++|.|++-+..-++-..+.-..+-+..|++.. ++..+.+.|.|..++|.. .--+
T Consensus 138 ~~~l~~a~~r~~~ls~~V~l~~~~~~l~ls~~~d~g~~~~~l~~~~~~~~~~~~ge-~~~i~Fn~~yL~d~lk~~-~~s~ 215 (249)
T 1iz5_A 138 GEVLKAAVKAASLVSDSIKFIARENEFIMKAEGETQEVEIKLTLEDEGLLDIEVQE-ETKSAYGVSYLSDMVKGL-GKAD 215 (249)
T ss_dssp HHHHHHHHHHHTTTCSEEEEEEETTEEEEEEECSSCEEEEEEETTTTSSSEEEESS-CEEEEEEHHHHHHHHTTS-CTTC
T ss_pred HHHHHHHHHHHHhcCCEEEEEEECCEEEEEEEecCceEEEEEccCCCccEEEEcCC-ceEEEEeHHHHHHHhhhc-cCCC
Confidence 37899999999999999999999999999985544444444433334455687765 599999999999999984 3267
Q ss_pred eEEEEecCCCCCeEEEEEEeC
Q 038865 90 NLTVQLPNSDAPKVQWTLKCY 110 (345)
Q Consensus 90 ~~~i~l~d~d~~~L~~~l~c~ 110 (345)
++.|.+. +..-+.++..-.
T Consensus 216 ~V~l~~~--~~~p~~i~~~~~ 234 (249)
T 1iz5_A 216 EVTIKFG--NEMPMQMEYYIR 234 (249)
T ss_dssp EEEEEEC--TTCCEEEEEEET
T ss_pred eEEEEEc--CCCCEEEEEEeC
Confidence 8888885 235577776443
No 40
>3fds_D DNA polymerase sliding clamp C; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B*
Probab=94.94 E-value=0.46 Score=42.77 Aligned_cols=96 Identities=19% Similarity=0.244 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCc--cCCceeeecCCEEEEEEEchhhHHHhcCCCCc
Q 038865 10 LKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMP--NFFDVYTVSGAQVQCSVLLKAVCAVLRTPTAS 87 (345)
Q Consensus 10 ~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~--~FF~~Y~~~~~~~~~~i~~Ksll~vfk~~~~~ 87 (345)
-+.|.+++.-++-+++.+.|.++++++.+++-+.. .-+...+++ +-...++ ++++....++|.|..++|.. ..
T Consensus 137 s~~f~~~i~~~~~~s~~V~i~~~~~~l~~s~~gd~--g~~~~~l~~~~~~~~~~~--~e~~~~~F~~~YL~~~~ka~-~~ 211 (245)
T 3fds_D 137 TITFADIIDELSDLGEVLNIHSKENKLYFEVIGDL--STAKVELSTDNGTLLEAS--GADVSSSYGMEYVANTTKMR-RA 211 (245)
T ss_dssp HHHHHHHHHHHTTTCSEEEEEEETTEEEEEEECSS--CEEEEEECTTSSSCSEEE--ECCCEEEEEHHHHHHGGGGG-GT
T ss_pred HHHHHHHHHHHHhcCCEEEEEEeCCEEEEEEEecC--cEEEEEEcCCCCceEEEe--cceEEEEEEHHHHHHHhhhc-cc
Confidence 47899999999999999999999999999996543 445555554 3344555 44699999999999999983 33
Q ss_pred cceEEEEecCCCCCeEEEEEEeC-CC
Q 038865 88 IDNLTVQLPNSDAPKVQWTLKCY-NG 112 (345)
Q Consensus 88 vd~~~i~l~d~d~~~L~~~l~c~-~g 112 (345)
-+++.|++. ++.-+.+++.-. .|
T Consensus 212 s~~V~i~~~--~~~Pl~l~~~i~~~g 235 (245)
T 3fds_D 212 SDSMELYFG--SQIPLKLRFKLPQEG 235 (245)
T ss_dssp CSEEEEEEC--TTSCEEEEEECSTTC
T ss_pred CCEEEEEec--CCccEEEEEEeCCCe
Confidence 478899984 335577776433 45
No 41
>2zvv_A PCNA 1, proliferating cellular nuclear antigen 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 2zvw_A
Probab=94.64 E-value=1 Score=41.19 Aligned_cols=94 Identities=21% Similarity=0.227 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCc-------cCCceeeecCCEEEEEEEchhhHHHhcC
Q 038865 11 KTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMP-------NFFDVYTVSGAQVQCSVLLKAVCAVLRT 83 (345)
Q Consensus 11 k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~-------~FF~~Y~~~~~~~~~~i~~Ksll~vfk~ 83 (345)
+.|.+++.-++-+++++.|.+++++|.|++-+ -..-+...|.. +-+..|++.. ++....+.|.|..++|.
T Consensus 162 ~~l~~av~r~~~~sd~V~i~~~~~~l~lsa~g--d~g~~~~~l~~~~~~~~~~~~~~~~~ge-~~~i~fn~~YL~d~lka 238 (276)
T 2zvv_A 162 NEFSRICKDLSSIGDTVVISVTKEGVKFSTAG--DIGTANIVLRQNTTVDKPEDAIVIEMKE-PVSLSFALRYMNSFTKA 238 (276)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEETTEEEEEEEE--TTEEEEEEECCCSSCCSGGGCCEEEESS-CEEEEEEHHHHHHHGGG
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCEEEEEEEe--eccEEEEEEccCCCCCCccccEEEecCC-cEEEEEEHHHHHHHhcc
Confidence 78999999999999999999999999999954 45556777763 4455677765 59999999999999998
Q ss_pred CCCccceEEEEecCCCCCeEEEEEEeC
Q 038865 84 PTASIDNLTVQLPNSDAPKVQWTLKCY 110 (345)
Q Consensus 84 ~~~~vd~~~i~l~d~d~~~L~~~l~c~ 110 (345)
. .--+++.|.+. +..-+.++..-.
T Consensus 239 ~-~ls~~V~i~l~--~~~Pl~l~~~~~ 262 (276)
T 2zvv_A 239 T-PLSDTVTISLS--SELPVVVEYKVA 262 (276)
T ss_dssp G-GGCSEEEEEEC--TTSCEEEEEEET
T ss_pred c-cCCCEEEEEEc--CCceEEEEEEeC
Confidence 4 22578888884 335577776543
No 42
>3aiz_A DNA polymerase sliding clamp B; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_B*
Probab=94.43 E-value=0.71 Score=41.31 Aligned_cols=114 Identities=16% Similarity=0.215 Sum_probs=80.3
Q ss_pred EcchhHHHHHhhhcCCcceEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEEEecCCccceeecccCCc
Q 038865 143 VRPRDLNRLLSNFQSSLQEITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQLWIDPTEEFVQYTHSGDP 222 (345)
Q Consensus 143 i~~~~L~~~l~~F~~~~eeItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev~I~~~eEF~~y~~~~~~ 222 (345)
.+++.|+++++.......++.|.++++ .+.+..- |+.+-...++.+..+ .|.+|. +..+
T Consensus 7 ~~~~~~k~i~~~i~~~l~gv~~~~~~~--------------~l~~vat-----D~~rla~~~~~l~~~-~f~~y~-~~~~ 65 (248)
T 3aiz_A 7 SSAKDFYSLLSGLLKVTDEIILNFTED--------------SIFSRYL-----TDDKVLMVIFKIPKE-YLEDYT-IDKP 65 (248)
T ss_dssp SCHHHHHHHHTTCTTCCSEEEEEECSS--------------EEEEEEE-----CTTSSEEEEEEEEGG-GCEEEE-CSSC
T ss_pred cchHHHHHHHHHHHHHHheEEEEEccC--------------cEEEEEE-----CCCCEEEEEEEECHH-hCceEE-cCCC
Confidence 467899999999999999999999864 4555543 222334456677643 688897 5667
Q ss_pred eEEEEEhHHHHHHHhhhccCCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEeccc
Q 038865 223 VDVTFGVKELKAFLSFCEGCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATMLV 284 (345)
Q Consensus 223 ~~itF~LKefkail~fae~~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~~~ 284 (345)
+.+..++++|..++.-+ -+..+.+.++..|.++.|. |+-.+ ++....|.+-.+..
T Consensus 66 i~~~~~l~~l~kil~~~--~~~~v~i~~~~~~~~l~~~--~~~~~---~~~~~~~~~rlidg 120 (248)
T 3aiz_A 66 LGIKININDLKKILGKA--KSKSATVTLEETEAGLKVT--VRDEK---TGTRSNIYIKGEKT 120 (248)
T ss_dssp EEEEEEHHHHHHHHHTC--SSTTCEEEEEECSSEEEEE--EEETT---TTEEEEEEEECEEE
T ss_pred eEEEEEHHHHHHHHhhc--CCCEEEEEEeCCCCeEEEE--EEeCC---CCEEEEEEEEcccc
Confidence 78999999999998865 2556889998878899887 43211 24455666555443
No 43
>3a1j_A Cell cycle checkpoint control protein RAD9A; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3ggr_A
Probab=94.14 E-value=0.31 Score=44.59 Aligned_cols=107 Identities=10% Similarity=0.139 Sum_probs=76.8
Q ss_pred cHHHHHHHHHHHhhcCceEEEEEc-CCeEEEEEEc----CC--ccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHh
Q 038865 9 ALKTFARCLACLSRIGNELVIQAS-SHQLAFHTLN----SS--RSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVL 81 (345)
Q Consensus 9 ~~k~f~rai~~Lskigdel~ie~~-~~gL~L~avN----sS--rSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vf 81 (345)
.-+.|++++..+..++|++.|.++ ++++.+++-. .+ +.....+...++-|..|++.. ++.....+|.|..++
T Consensus 148 ~s~~~~~~~~~~~~~~d~v~i~~~~~~~v~~~s~~~~~~~~~~~~~~t~~~~~~~e~~~~~~~~-~~~~tFslkyl~~~l 226 (266)
T 3a1j_A 148 PARVLGEAVLPFSPALAEVTLGIGRGRRVILRSYHEEEADSTAKAMVTEMCLGEEDFQQLQAQE-GVAITFCLKEFRGLL 226 (266)
T ss_dssp EHHHHHHHHTTSCTTCCEEEEEECGGGCEEEEEECCC-CCCSCCCCEEEEEECGGGCSEEECCT-TCEEEEEHHHHHHHH
T ss_pred ChHHHHHHHHhCCCChhhEEEEeCCCCEEEEEEcccCccccccccceEEEEECHHHhhheecCC-CCEEEEEHHHHHHHH
Confidence 357899999999999999999999 9999999933 22 677788888899999999976 477777888887755
Q ss_pred cCCCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEE
Q 038865 82 RTPTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYW 118 (345)
Q Consensus 82 k~~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~ 118 (345)
.-....-..+.|.+.. ...-|.+.+ ...|..-+|-
T Consensus 227 ~f~~~~~~~v~i~~~~-~g~Pl~~~~-~~~~~~~~f~ 261 (266)
T 3a1j_A 227 SFAESANLNLSIHFDA-PGRPAIFTI-KDSLLDGHFV 261 (266)
T ss_dssp HHHHHTTCEEEEEECS-TTSCEEEEE-ECSSEEEEEE
T ss_pred HHHHhcCCcEEEEECC-CCccEEEEE-eCCcEEEEEE
Confidence 4211112347777732 234477777 3344444443
No 44
>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication; 2.00A {Haloferax volcanii} PDB: 3hi8_A
Probab=93.86 E-value=0.52 Score=42.51 Aligned_cols=94 Identities=7% Similarity=0.082 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhhcCceEEEEEc--CCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhcCCCCc
Q 038865 10 LKTFARCLACLSRIGNELVIQAS--SHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLRTPTAS 87 (345)
Q Consensus 10 ~k~f~rai~~Lskigdel~ie~~--~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk~~~~~ 87 (345)
-+.|.+++.-++-+++.+.|.++ ++++.+++-. -..-+.+.++++-...|+ +++++...++|.|..++|.. ..
T Consensus 135 s~~f~~~i~~~~~~sd~V~i~~~~~~~~~~~s~~g--d~g~~~~~l~~~~~~~~~--~e~~~~~F~~~YL~~~~Ka~-~~ 209 (247)
T 3ifv_A 135 GTHLDRGIKAADMVSDHIRLRVDGAEETFHIEAEG--DTDDVDLSLPPADLISIE--AGAADSLFSLDYLKDMNKAI-PT 209 (247)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEETTTTEEEEEEEC--SSCEEEEEECGGGCSEEE--ECCCEEEEEHHHHHHHHHHS-CT
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCEEEEEEEe--cceEEEEEECCCceEEEe--cCeEEEEEeHHHHHHhhhhc-cC
Confidence 47899999999999999999999 7899999953 556678888876455665 44699999999999999973 34
Q ss_pred cceEEEEecCCCCCeEEEEEEeC
Q 038865 88 IDNLTVQLPNSDAPKVQWTLKCY 110 (345)
Q Consensus 88 vd~~~i~l~d~d~~~L~~~l~c~ 110 (345)
-+++.|++. +..-|.+++.-.
T Consensus 210 s~~V~i~~~--~~~Pl~l~~~i~ 230 (247)
T 3ifv_A 210 DAEVTVELG--EEFPVKLHYQIA 230 (247)
T ss_dssp TCEEEEEEC--BSSCEEEEEEEG
T ss_pred CCEEEEEec--CCccEEEEEEEc
Confidence 578899884 334577766543
No 45
>1rwz_A DNA polymerase sliding clamp; torus, processivity factor, replication; HET: DNA; 1.80A {Archaeoglobus fulgidus} SCOP: d.131.1.2 d.131.1.2 PDB: 1rxm_A* 1rxz_A* 3p83_A*
Probab=93.85 E-value=2.3 Score=37.87 Aligned_cols=92 Identities=10% Similarity=0.151 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHhcCCCCccc
Q 038865 10 LKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVLRTPTASID 89 (345)
Q Consensus 10 ~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vfk~~~~~vd 89 (345)
-+.|.+++.-++-+++++.|.+++++|.|++-+ -..-+...+..+-...|+.+ ++..+.+.|.|..++|.. .--+
T Consensus 135 ~~~l~~av~r~~~ls~~V~l~~~~~~l~ls~~~--d~g~~~~~~~~e~~~~~~g~--~~~i~Fn~~yL~d~lk~~-~~s~ 209 (245)
T 1rwz_A 135 AGEFKKAIAAADKISDQVIFRSDKEGFRIEAKG--DVDSIVFHMTETELIEFNGG--EARSMFSVDYLKEFCKVA-GSGD 209 (245)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEETTEEEEEEEC--SSCEEEEEECGGGSSEECCC--CEEEEEEHHHHHHHGGGC-CTTC
T ss_pred HHHHHHHHHHHHhcCCEEEEEEECCEEEEEEEc--cCcEEEEecCCCccEEEEEe--eEEEEEeHHHHHHHhhhc-cCCC
Confidence 378999999999999999999999999999844 33336666666555566554 399999999999999984 3267
Q ss_pred eEEEEecCCCCCeEEEEEE
Q 038865 90 NLTVQLPNSDAPKVQWTLK 108 (345)
Q Consensus 90 ~~~i~l~d~d~~~L~~~l~ 108 (345)
++.|.+. +..-+.++..
T Consensus 210 ~V~l~~~--~~~p~~i~~~ 226 (245)
T 1rwz_A 210 LLTIHLG--TNYPVRLVFE 226 (245)
T ss_dssp EEEEEEC--SSSCEEEEEE
T ss_pred eEEEEEC--CCCCEEEEEE
Confidence 8889885 2356777764
No 46
>3aiz_C DNA polymerase sliding clamp C; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_A*
Probab=93.59 E-value=1.9 Score=38.43 Aligned_cols=93 Identities=11% Similarity=0.109 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhhc-CceEEEEEcCCeEEEEEEcCCccEEEEEEeCc--cCCceeeecCCEEEEEEEchhhHHHhcCCCC
Q 038865 10 LKTFARCLACLSRI-GNELVIQASSHQLAFHTLNSSRSAYQSITFMP--NFFDVYTVSGAQVQCSVLLKAVCAVLRTPTA 86 (345)
Q Consensus 10 ~k~f~rai~~Lski-gdel~ie~~~~gL~L~avNsSrSA~~~~~f~~--~FF~~Y~~~~~~~~~~i~~Ksll~vfk~~~~ 86 (345)
-+.|.+++.-++-+ ++++.|.+++++|.|++-+ -..-+...+.. +-+..|+. +++..+.+.|.|..++|.. .
T Consensus 136 ~~~l~~a~~r~~~l~s~~V~l~~~~~~l~ls~~~--d~g~~~~~l~~~~~~~~~~~g--e~~~i~Fn~~yL~d~lk~~-~ 210 (246)
T 3aiz_C 136 TVTFTDIIDEIEDIGGDSITFKAEGGKLYLSANS--DMGSSTIELSTENGGLLESEG--GDAESVYGLEYVVNTSKMR-K 210 (246)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEEETTEEEEEEEC--SSCEEEEEECTTTTSCSEEEE--CCEEEEEEHHHHHTTGGGT-T
T ss_pred HHHHHHHHHHHhhCCCCEEEEEEECCEEEEEEEc--CCceEEEEEecCCCccEEEEE--eeEEEEEEHHHHHHHhhhc-c
Confidence 37899999999999 9999999999999999855 44445555553 33456776 3599999999999999984 2
Q ss_pred ccceEEEEecCCCCCeEEEEEEe
Q 038865 87 SIDNLTVQLPNSDAPKVQWTLKC 109 (345)
Q Consensus 87 ~vd~~~i~l~d~d~~~L~~~l~c 109 (345)
--+++.|.+. +..-+.++..-
T Consensus 211 ~s~~V~l~~~--~~~p~~i~~~~ 231 (246)
T 3aiz_C 211 PSDTVEIAFG--SQIPLKLRYNL 231 (246)
T ss_dssp TCSEEEEEEE--TTEEEEEEEEE
T ss_pred CCCeEEEEec--CCCcEEEEEEe
Confidence 2578888885 23556666543
No 47
>2ijx_A DNA polymerase sliding clamp A; PCNA3 subunit, protein-protein interaction, PCNA123 heterotr binding protein; HET: DNA; 1.90A {Sulfolobus solfataricus} PDB: 2nti_F* 2hii_C 2hik_C 2ix2_C*
Probab=92.92 E-value=1.4 Score=39.26 Aligned_cols=92 Identities=12% Similarity=0.169 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeC--ccCCceeeecCCEEEEEEEchhhHHHhcCCCCc
Q 038865 10 LKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFM--PNFFDVYTVSGAQVQCSVLLKAVCAVLRTPTAS 87 (345)
Q Consensus 10 ~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~--~~FF~~Y~~~~~~~~~~i~~Ksll~vfk~~~~~ 87 (345)
-+.|.+++.-++-+++++.|.+++++|.|++-+..-+ ...+. .+-+..|++.. ++..+.+.|.|..++|.. .-
T Consensus 136 ~~~l~~a~~r~~~~s~~V~l~~~~~~l~ls~~~d~g~---~~~l~~~~~~~~~~~~ge-~~~i~Fn~~yL~d~lk~~-~~ 210 (244)
T 2ijx_A 136 SDGFKSAISEVSTVTDNVVVEGHEDRILIKAEGESEV---EVEFSKDTGGLQDLEFSK-ESKNSYSAEYLDDVLSLT-KL 210 (244)
T ss_dssp HHHHHHHHHHHTTTCSEEEEEEETTEEEEEETTCTTS---EEEEETTTTCEEEEEESS-CEEEEEEHHHHHHTGGGG-GG
T ss_pred HHHHHHHHHHHHhcCCEEEEEEECCEEEEEEEecCce---EEEEeCCCCccEEEEcCC-ceEEEEEHHHHHHHhhhc-cC
Confidence 3789999999999999999999999999998443333 44443 23345677655 699999999999999984 22
Q ss_pred cceEEEEecCCCCCeEEEEEE
Q 038865 88 IDNLTVQLPNSDAPKVQWTLK 108 (345)
Q Consensus 88 vd~~~i~l~d~d~~~L~~~l~ 108 (345)
-+++.|.+. +..-+.++..
T Consensus 211 s~~V~l~~~--~~~p~~i~~~ 229 (244)
T 2ijx_A 211 SDYVKISFG--NQKPLQLFFN 229 (244)
T ss_dssp CSEEEEEEE--TTEEEEEEEE
T ss_pred CCEEEEEEc--CCCCEEEEEE
Confidence 577888885 2355666653
No 48
>1ud9_A DNA polymerase sliding clamp A; DNA-binding, DNA replication, DNA binding protein; HET: DNA; 1.68A {Sulfolobus tokodaii} SCOP: d.131.1.2 d.131.1.2
Probab=92.70 E-value=1.8 Score=38.61 Aligned_cols=92 Identities=8% Similarity=0.164 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCc--cCCceeeecCCEEEEEEEchhhHHHhcCCCCc
Q 038865 10 LKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMP--NFFDVYTVSGAQVQCSVLLKAVCAVLRTPTAS 87 (345)
Q Consensus 10 ~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~--~FF~~Y~~~~~~~~~~i~~Ksll~vfk~~~~~ 87 (345)
-+.|.+++.-++-+++++.|.+++++|.|++-+ -..- ...+.. +-+..|++.. ++..+.+.|.|..++|.. .-
T Consensus 136 ~~~l~~a~~r~~~~s~~V~l~~~~~~l~ls~~~--d~g~-~~~l~~~~~~~~~~~~ge-~~~i~Fn~~yL~d~lk~~-~~ 210 (245)
T 1ud9_A 136 ASGLKNAIGEIAEVADTLLISGNEEKVVVKGEG--ENKV-EVEFSKDTGSLADIEFNK-ESSSAYDVEYLNDIISLT-KL 210 (245)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEECSSEEEEEESS--SSCC-CEEEEGGGTCEEEEEESS-CEEEEEEHHHHHHTGGGG-GG
T ss_pred HHHHHHHHHHHHhcCCEEEEEEECCEEEEEEEc--cCce-EEEEecCCCccEEEEeCC-ceeEEEEHHHHHHHhhhc-cc
Confidence 378999999999999999999999999999744 3333 444442 3334576654 699999999999999984 22
Q ss_pred cceEEEEecCCCCCeEEEEEE
Q 038865 88 IDNLTVQLPNSDAPKVQWTLK 108 (345)
Q Consensus 88 vd~~~i~l~d~d~~~L~~~l~ 108 (345)
-+++.|.+. +..-+.++..
T Consensus 211 s~~V~l~~~--~~~p~~i~~~ 229 (245)
T 1ud9_A 211 SDYVKVAFA--DQKPMQLEFN 229 (245)
T ss_dssp CSEEEEEEC--TTSCEEEEEE
T ss_pred CCEEEEEEc--CCCCEEEEEE
Confidence 578888885 2355777754
No 49
>3a1j_B HHUS1, checkpoint protein HUS1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_C 3ggr_B
Probab=92.58 E-value=5 Score=36.87 Aligned_cols=113 Identities=15% Similarity=0.151 Sum_probs=73.3
Q ss_pred eeEEecccHHHHHHHHHHHhhcCceEEEEEcCCe-EEEEEEcCCccEEEEEEeCccCCce-ee------e-cCCEEEEEE
Q 038865 2 EFAVSGNALKTFARCLACLSRIGNELVIQASSHQ-LAFHTLNSSRSAYQSITFMPNFFDV-YT------V-SGAQVQCSV 72 (345)
Q Consensus 2 ~~~l~~~~~k~f~rai~~Lskigdel~ie~~~~g-L~L~avNsSrSA~~~~~f~~~FF~~-Y~------~-~~~~~~~~i 72 (345)
++.|.-++++.|++++.=|+.+|+.+.|.++.+| |.|++-.. .+-+.+.|+..-=-. .. . ....+++.+
T Consensus 156 dv~i~lPsl~~~~~iv~~lk~i~d~v~i~a~~~G~l~f~~~~d--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~sv~~ 233 (281)
T 3a1j_B 156 DVSIYLPVLKTMKSVVEKMKNISNHLVIEANLDGELNLKIETE--LVCVTTHFKDLGNPPLASESTHEDRNVEHMAEVHI 233 (281)
T ss_dssp SEEEECCCHHHHHHHHHHHHTTCSEEEEEECTTSCEEEEEECS--SEEEEEEECCCCCCCC----------CCCCEEEEE
T ss_pred CeEEECCCHHHHHHHHHHHhccCCeEEEEEECCCeEEEEEEee--eEEEEEEEcCCCCCCCCccccccccCCCccEEEEE
Confidence 3566677889999999999999999999999999 99998643 666667776511100 00 1 123589999
Q ss_pred EchhhHHHhcCCCCccceEEEE-ecCCCCCeEEEEEEeCCCeEEEEEee
Q 038865 73 LLKAVCAVLRTPTASIDNLTVQ-LPNSDAPKVQWTLKCYNGMKKAYWIT 120 (345)
Q Consensus 73 ~~Ksll~vfk~~~~~vd~~~i~-l~d~d~~~L~~~l~c~~gI~Kt~~L~ 120 (345)
.+|.+.+.+|...-+ .++.+. +.+ +. -|.+-+....| .=+|.|+
T Consensus 234 ~~k~l~~f~k~~~ls-~~v~~~~i~~-~~-~l~~y~~~~~g-~l~yylp 278 (281)
T 3a1j_B 234 DIRKLLQFLAGQQVN-PTKALCNIVN-NK-MVHFDLLHEDV-SLQYFIP 278 (281)
T ss_dssp EHHHHHHHHHHCCSC-CSEEEEEEET-TT-EEEEEEESSSC-EEEEEEE
T ss_pred EHHHHHHhhCcccCC-CcEEEEEEeC-Cc-eEEEEEeCCcE-EEEEEee
Confidence 999999999963212 233333 422 33 36663333344 3346554
No 50
>1dml_A DNA polymerase processivity factor; herpes simplex virus, DNA synthesis, sliding clamps, PCNA, processivity, DNA binding protein/transferase complex; HET: DNA; 2.70A {Human herpesvirus 1} SCOP: d.131.1.2 d.131.1.2
Probab=90.33 E-value=12 Score=35.03 Aligned_cols=259 Identities=11% Similarity=0.079 Sum_probs=145.6
Q ss_pred eEEecccHHHHHHHHHHHhhcCceEEEEEcCCeEEEEEEcCCccEEEEEEeCccCCceeeecCCEEEEEE---EchhhHH
Q 038865 3 FAVSGNALKTFARCLACLSRIGNELVIQASSHQLAFHTLNSSRSAYQSITFMPNFFDVYTVSGAQVQCSV---LLKAVCA 79 (345)
Q Consensus 3 ~~l~~~~~k~f~rai~~Lskigdel~ie~~~~gL~L~avNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~i---~~Ksll~ 79 (345)
.+|.++++.....++.-|..--.+-.+..+++||.+++-=-..=.| +-+..+-|++|++.++..-+-- .=++|+.
T Consensus 33 ~vL~g~~L~~~~~alaPl~~sLkds~LvFse~GllIh~sv~gEQVy--vPi~~~~FS~Y~W~GP~AvFLAlvD~RrsLLD 110 (319)
T 1dml_A 33 VVLQGAELNGILQAFAPLRTSLLDSLLVMGDRGILIHNTIFGEQVF--LPLEHSQFSRYRWRGPTAAFLSLVDQKRSLLS 110 (319)
T ss_dssp EEEEHHHHHHHHHHHGGGTTTTSSCEEEEETTEEEEEEEETTEEEE--EEEEGGGSSEEECCSSCEEEESEEETTEETTS
T ss_pred EEEechhHHHHHHHHHhHHHhhcccEEEEcCCceEEEeeecceEEE--EEcChHhccccEecCCceEEeEecccchhHHH
Confidence 4566666665555555555556788999999999998754444344 4567899999999986544422 2478999
Q ss_pred HhcCC-CCccceEEEEecCCCCCeEEEEE-EeC-C--C-------eEEEEEeeecccCcccccccCCCCCceEEEEcchh
Q 038865 80 VLRTP-TASIDNLTVQLPNSDAPKVQWTL-KCY-N--G-------MKKAYWITCNVEPDIQHLSLDRRRFPSNFVVRPRD 147 (345)
Q Consensus 80 vfk~~-~~~vd~~~i~l~d~d~~~L~~~l-~c~-~--g-------I~Kt~~L~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 147 (345)
+||.- .+++-++.+.+...-..|...+- ... . + -.-+|.|... . +.+|.......++..-..
T Consensus 111 aFr~~k~~~~~rV~F~i~G~~P~R~LtQ~v~~~~~d~~~~~~~~~tlvK~El~~y---s---vmlPq~~PDvtl~LsK~Q 184 (319)
T 1dml_A 111 VFRANQYPDLRRVELAITGQAPFRTLVQRIWTTTSDGEAVELASETLMKRELTSF---V---VLVPQGTPDVQLRLTRPQ 184 (319)
T ss_dssp TTSTTTCTTEEEEEEEEESCTTSCEEEEEEEETTSSTTCSSSSCCEEEEECCSSC---E---EEECCSCCSEEEEECHHH
T ss_pred HhccCCCCCcEEEEEEEecCCCcceEEEEEEEecCCCCccchhhHHHHHHhhhce---E---EEccCCCCCEEEEEcHHH
Confidence 99972 23577888887532334443333 331 1 1 2233444322 1 234555566899999999
Q ss_pred HHHHHhhh-cCCcceEEEEEcCCCCCCCCcccccCCeEEEEEeccCCCCCCCCceeEEE-----EecCCc-----cceee
Q 038865 148 LNRLLSNF-QSSLQEITVIATEPTSLPSDAASEIGGKAVELRSYIDPTKDNDSTLHTQL-----WIDPTE-----EFVQY 216 (345)
Q Consensus 148 L~~~l~~F-~~~~eeItl~~t~~~~~~s~~~~~~g~~~v~lks~~e~~~~~~~~l~Tev-----~I~~~e-----EF~~y 216 (345)
|.+++.-. ....+++|++...+. +|+. ..|+..|.|..-.+...+.. ..++ .+..+. .-.-|
T Consensus 185 L~Kil~~~~k~~~~~ttF~L~~~~-~f~v---~sg~~~vtfsa~~~g~~~~t---~~~~~il~~A~~k~~~a~~~~~tv~ 257 (319)
T 1dml_A 185 LTKVLNATGADSATPTTFELGVNG-KFSV---FTTSTCVTFAAREEGVSSST---STQVQILSNALTKAGQAAANAKTVY 257 (319)
T ss_dssp HHHHHHHSCCSTTSCEEEEECTTS-EEEE---ECSSCEEEEECCBCC---------------------------CTTBCE
T ss_pred HHHHHHHHhcCCCCceEEEEecCC-cEEE---ecCCeEEEEEEeccCCCCCh---hhHHHHHHHhhhhhhhhcccceEEe
Confidence 99999844 455679999998642 2222 12456777754444332211 1111 110000 00011
Q ss_pred c-ccCCceEEEEEhHHHHHHHhhhccCCCeEEEEeeCCCCcEEEeeeccCCCCCCCceEEEEEEEec
Q 038865 217 T-HSGDPVDVTFGVKELKAFLSFCEGCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDATLVLATM 282 (345)
Q Consensus 217 ~-~~~~~~~itF~LKefkail~fae~~~~~i~i~f~~~G~Pl~~~~~f~l~d~~~~~~~a~fvLAT~ 282 (345)
- ....+-.++..=--||+++.--+.-+..+..||. ++.|++-.. -.+ -+...+-|.|+|.
T Consensus 258 G~~~~r~F~laLed~~fr~vlqklk~gg~~L~Fflt-~~~Pml~Vt---~~~--p~~vsafFf~~p~ 318 (319)
T 1dml_A 258 GENTHRTFSVVVDDCSMRAVLRRLQVGGGTLKFFLT-TPVPSLCVT---ATG--PNAVSAVFLLKPQ 318 (319)
T ss_dssp EESTTSCEEEEESSCCHHHHHHHTTCCSEEEEEECS-SSSCEEEEE---ESS--SSCCEEEEEBCCC
T ss_pred ccCCCcceEEEeccccHHHHHHHHhccCeEEEEEec-CCCCeEEEE---cCC--CCceEEEEEecCC
Confidence 1 0111211211111288888888887888888888 468887431 222 1345677777663
No 51
>3g65_A Cell cycle checkpoint control protein RAD9A; PCNA, DNA binding clamp, DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein; 2.90A {Homo sapiens}
Probab=90.08 E-value=1.5 Score=40.96 Aligned_cols=108 Identities=10% Similarity=0.160 Sum_probs=83.9
Q ss_pred cHHHHHHHHHHHhhcCceEEEEEc-CCeEEEEEEcC-----C-ccEEEEEEeCccCCceeeecCCEEEEEEEchhhHHHh
Q 038865 9 ALKTFARCLACLSRIGNELVIQAS-SHQLAFHTLNS-----S-RSAYQSITFMPNFFDVYTVSGAQVQCSVLLKAVCAVL 81 (345)
Q Consensus 9 ~~k~f~rai~~Lskigdel~ie~~-~~gL~L~avNs-----S-rSA~~~~~f~~~FF~~Y~~~~~~~~~~i~~Ksll~vf 81 (345)
+.++|+.++.-+....||+.|.++ ++.+.+++-.. . +.....+.+.++-|+.|++.. +....+.+|.+-.++
T Consensus 148 ~~~~l~e~l~~f~~~~eevtl~~~~~~~v~~~s~~e~~~d~~~~~~~Tel~i~~~ef~~~~v~~-~~~itf~lKefrail 226 (296)
T 3g65_A 148 PARVLGEAVLPFSPALAEVTLGIGRGRRVILRSYHEEEADSTAKAMVTEMCLGEEDFQQLQAQE-GVAITFCLKEFRGLL 226 (296)
T ss_dssp EHHHHHHHSTTSCTTCCEEEEEEETTTEEEEEECCC-----CCCCCEEEEEECGGGCSEEECCT-TCEEEEEHHHHHHHH
T ss_pred chHHHHHHHHhCcCCcceEEEEECCCCeEEEEEeccccccccCceEEEEEEEChhHheeEecCC-CcEEEEEHHHHHHHH
Confidence 358899999999999999999999 79999999743 2 889999999999999999976 478888999998888
Q ss_pred cCCCCccceEEEEecCCCCCeEEEEEEeCCCeEEEEEe
Q 038865 82 RTPTASIDNLTVQLPNSDAPKVQWTLKCYNGMKKAYWI 119 (345)
Q Consensus 82 k~~~~~vd~~~i~l~d~d~~~L~~~l~c~~gI~Kt~~L 119 (345)
.-....-..+.+.... ...-|.+.+.. .++.-+|-|
T Consensus 227 ~~ae~~~~~i~i~f~~-pG~Pl~~~~~~-~~~~~~fvL 262 (296)
T 3g65_A 227 SFAESANLNLSIHFDA-PGRPAIFTIKD-SLLDGHFVL 262 (296)
T ss_dssp HHHHHTTCEEEEECCS-TTSCEEEEEEC-SSCEEEEEE
T ss_pred HHHHhcCCeEEEEECC-CCCcEEEEEeC-CcEEEEEEE
Confidence 7522222367777743 23447888874 566666666
No 52
>3pk1_B Apoptosis regulator BAX; BCL-2 family fold, regulation of apoptosis, mitochondri apoptosis-apoptosis regulator complex; 2.49A {Homo sapiens} PDB: 3pl7_C 2xa0_C
Probab=49.06 E-value=2.9 Score=26.02 Aligned_cols=14 Identities=50% Similarity=0.937 Sum_probs=12.4
Q ss_pred HHHHHHHhhcCceE
Q 038865 14 ARCLACLSRIGNEL 27 (345)
Q Consensus 14 ~rai~~Lskigdel 27 (345)
++.++||-+||||+
T Consensus 10 K~l~~cL~~IgDEl 23 (34)
T 3pk1_B 10 KKLSECLKRIGDEL 23 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 58899999999986
Done!