Query 038867
Match_columns 721
No_of_seqs 128 out of 363
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 06:17:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038867.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038867hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 99.9 6.5E-27 2.2E-31 213.1 14.5 109 567-680 6-119 (130)
2 4i1k_A B3 domain-containing tr 99.6 1.7E-14 5.8E-19 134.4 12.3 96 572-679 46-143 (146)
3 1yel_A AT1G16640; CESG, protei 99.4 2E-12 6.9E-17 112.8 10.1 93 572-678 8-101 (104)
4 1na6_A Ecorii, restriction end 90.9 0.32 1.1E-05 52.7 6.5 91 572-665 18-123 (404)
5 3o27_A Putative uncharacterize 73.5 3.6 0.00012 35.0 4.3 42 639-680 24-65 (68)
6 2co5_A Viral protein F93; vira 50.3 6.3 0.00021 34.5 1.7 24 465-488 76-99 (99)
7 2wl8_A Peroxisomal biogenesis 48.4 4 0.00014 38.0 0.2 33 232-264 36-68 (126)
8 2vb2_X Copper protein, cation 36.4 36 0.0012 29.3 4.3 26 651-676 59-84 (88)
9 2qcp_X Cation efflux system pr 35.1 42 0.0014 28.4 4.4 26 651-676 51-76 (80)
10 4grv_A Neurotensin receptor ty 33.6 8.8 0.0003 40.1 0.0 15 476-490 493-507 (510)
11 2i7u_A Four-alpha-helix bundle 32.3 21 0.00073 29.1 2.1 21 232-271 6-26 (62)
12 2oxn_A Beta-hexosaminidase; TI 31.9 18 0.0006 38.0 1.9 25 467-491 315-339 (340)
13 3c5t_B Exendin-4, exenatide; l 26.9 24 0.00082 26.1 1.3 17 232-248 8-24 (31)
14 2k75_A Uncharacterized protein 26.8 1.3E+02 0.0045 26.2 6.3 43 611-677 41-86 (106)
15 1yfb_A Transition state regula 24.4 47 0.0016 26.9 2.8 19 582-600 16-34 (59)
16 2yjp_A Putative ABC transporte 24.1 16 0.00055 34.7 0.0 7 483-489 3-9 (291)
17 1kdl_A YOPD protein; yersinia, 24.1 33 0.0011 24.5 1.5 15 278-292 4-18 (26)
18 1ydx_A Type I restriction enzy 23.8 17 0.00057 36.8 0.0 22 648-670 264-286 (406)
19 2jt1_A PEFI protein; solution 23.8 9.2 0.00032 32.3 -1.6 17 471-487 60-76 (77)
20 1tvm_A PTS system, galactitol- 23.7 26 0.00089 30.8 1.2 10 481-490 3-12 (113)
21 4g1u_A Hemin transport system 23.3 17 0.00059 38.4 0.0 8 483-490 3-10 (357)
22 2es4_D Lipase chaperone; prote 22.9 18 0.00061 38.1 0.0 6 588-593 77-82 (332)
23 1lsh_B Lipovitellin (LV-2); vi 22.4 18 0.00063 37.8 0.0 12 392-403 277-288 (319)
24 2p5d_A UPF0310 protein mjecl36 21.7 74 0.0025 29.5 3.9 33 645-679 31-68 (147)
25 3seo_A VOPL C terminal domain 21.1 32 0.0011 35.0 1.4 44 231-276 62-110 (241)
26 1z67_A Hypothetical protein S4 20.0 31 0.0011 32.4 1.0 26 264-292 7-32 (135)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.94 E-value=6.5e-27 Score=213.14 Aligned_cols=109 Identities=31% Similarity=0.590 Sum_probs=96.9
Q ss_pred CCCcccceeeeccccCCCCCCCceeecHhHHhhhCCCCcC---CCCeEEEEEEcCCCcEEEEEEeeeeeCCCCCCceeec
Q 038867 567 PEKNLRFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELEA---RDGISIAMEDIGTSRVWNMRYSFRFWPNNKSRMYLLE 643 (721)
Q Consensus 567 ~~k~~~~LF~KvLT~SDVgklGRLVIPKk~AEa~LP~Ld~---~~Gi~L~veDi~tGkvW~FRys~RYW~NnkSRmYLLT 643 (721)
..+...++|+|+||+|||++++||+|||++||+|||.++. ..++.|.++|. +|++|+||| +|| +++++|+|+
T Consensus 6 ~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~-~Gk~W~fr~--~~~--~~~~~~~Lt 80 (130)
T 1wid_A 6 SGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDV-NGKVWRFRY--SYW--NSSQSYVLT 80 (130)
T ss_dssp --CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEET-TTEEEEEEE--EEE--TTTTEEEEE
T ss_pred CCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeC-CCCEEEEEE--EEE--CCCCceEEc
Confidence 3567789999999999999999999999999999999975 47799999998 899999999 889 667889997
Q ss_pred -ChhHHhhhcCCCCCCEEEEEEecC-CCeEEEEEEEccC
Q 038867 644 -NTGDFVKANGLQEGDFIVIYSDVK-CGKYLIRGVKVRQ 680 (721)
Q Consensus 644 -GWsdFVRsKgLqaGD~IVFyrd~s-nGky~IggRR~rq 680 (721)
||..||++|+|++||+|+|+++.. .++|+|++||+..
T Consensus 81 ~GW~~FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~ 119 (130)
T 1wid_A 81 KGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSG 119 (130)
T ss_dssp SSHHHHHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCS
T ss_pred CChHHHHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCC
Confidence 799999999999999999999864 3589999988754
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.56 E-value=1.7e-14 Score=134.43 Aligned_cols=96 Identities=21% Similarity=0.193 Sum_probs=79.9
Q ss_pred cceeeeccccCCCCCCCceeecHhHHhhhCCCCcCCCCeEEEEEEcCCCcEEEEEEeeeeeCCCCCCceeec-ChhHHhh
Q 038867 572 RFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELEARDGISIAMEDIGTSRVWNMRYSFRFWPNNKSRMYLLE-NTGDFVK 650 (721)
Q Consensus 572 ~~LF~KvLT~SDVgklGRLVIPKk~AEa~LP~Ld~~~Gi~L~veDi~tGkvW~FRys~RYW~NnkSRmYLLT-GWsdFVR 650 (721)
...|.|+||+|||.+..+|+||++.|++|||.. ...|.+.|. |+.|.++| .|+. ++ ++|+ ||..||+
T Consensus 46 ~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~----~~~i~L~~~--gk~W~v~~--~~~~---~~-~~ls~GW~~Fv~ 113 (146)
T 4i1k_A 46 NPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGI----SGFIKVQLA--EKQWPVRC--LYKA---GR-AKFSQGWYEFTL 113 (146)
T ss_dssp SCEEEEECCGGGSSTTCCEECCHHHHHHHCTTC----CSEEEEEET--TEEEEEEE--EEET---TE-EEECTTHHHHHH
T ss_pred CCEEEEEECchhcCCCcEEEeCHHHHHHhCCCC----CeEEEEEEC--CcEEEEEE--EEeC---Cc-EEECCchHHHHH
Confidence 569999999999998778999999999999975 247888897 59999999 7763 24 4555 8999999
Q ss_pred hcCCCCCCEEEEEEecCCC-eEEEEEEEcc
Q 038867 651 ANGLQEGDFIVIYSDVKCG-KYLIRGVKVR 679 (721)
Q Consensus 651 sKgLqaGD~IVFyrd~snG-ky~IggRR~r 679 (721)
+|+|++||+|+|-..+... .|.|.|.|+.
T Consensus 114 dn~L~~GD~cvFeli~~~~~~f~V~IfR~~ 143 (146)
T 4i1k_A 114 ENNLGEGDVCVFELLRTRDFVLKVTAFRVN 143 (146)
T ss_dssp HTTCCTTCEEEEEECSSSSCEEEEEEECCC
T ss_pred HcCCCCCCEEEEEEecCCceEEEEEEEecc
Confidence 9999999999997765433 7888888764
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.37 E-value=2e-12 Score=112.80 Aligned_cols=93 Identities=17% Similarity=0.281 Sum_probs=74.9
Q ss_pred cceeeeccccCCCCCCCceeecHhHHhhhCCCCcCCCCeEEEEEEcCCCcEEEEEEeeeeeCCCCCCceeec-ChhHHhh
Q 038867 572 RFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELEARDGISIAMEDIGTSRVWNMRYSFRFWPNNKSRMYLLE-NTGDFVK 650 (721)
Q Consensus 572 ~~LF~KvLT~SDVgklGRLVIPKk~AEa~LP~Ld~~~Gi~L~veDi~tGkvW~FRys~RYW~NnkSRmYLLT-GWsdFVR 650 (721)
...|.|+|+++|. ..+|.||++.++.+.+.+ +..|.++|. .|++|.++| +++ + . .++|+ ||.+||+
T Consensus 8 ~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~----~~~v~L~~~-~G~~W~v~~--~~~--~-~-~~~l~~GW~~Fv~ 74 (104)
T 1yel_A 8 EVQFMKPFISEKS--SKSLEIPLGFNEYFPAPF----PITVDLLDY-SGRSWTVRM--KKR--G-E-KVFLTVGWENFVK 74 (104)
T ss_dssp CEEEEEECCHHHH--TTCEECCHHHHTTCCCCC----CSEEEEEET-TSCEEEEEE--EEE--T-T-EEEECTTHHHHHH
T ss_pred CCCEEEEECCCCc--cceEECCHHHHHhcCccC----CCEEEEECC-CCCEEEEEE--EEE--C-C-cEEEccChHHHHH
Confidence 4689999999993 479999999998876544 347889997 899999999 544 2 2 35565 8999999
Q ss_pred hcCCCCCCEEEEEEecCCCeEEEEEEEc
Q 038867 651 ANGLQEGDFIVIYSDVKCGKYLIRGVKV 678 (721)
Q Consensus 651 sKgLqaGD~IVFyrd~snGky~IggRR~ 678 (721)
+|+|++||+|+|... .+.+|.|.|-+.
T Consensus 75 ~~~L~~GD~lvF~~~-~~~~f~V~If~~ 101 (104)
T 1yel_A 75 DNNLEDGKYLQFIYD-RDRTFYVIIYGH 101 (104)
T ss_dssp HHTCCTTCEEEEEEC-SSSEEEEEEECS
T ss_pred HcCCCCCCEEEEEEc-CCCeEEEEEECC
Confidence 999999999999765 467898887753
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=90.85 E-value=0.32 Score=52.68 Aligned_cols=91 Identities=12% Similarity=0.171 Sum_probs=63.7
Q ss_pred cceeeeccccCCCCC----CCceeecHhHHhhhCCCCcC----CCCeE--EEEEEcCCCcEEEEEEeeeeeCC----CCC
Q 038867 572 RFLLQKVLKQSDVGN----LGRIVLPKKEAETHLPELEA----RDGIS--IAMEDIGTSRVWNMRYSFRFWPN----NKS 637 (721)
Q Consensus 572 ~~LF~KvLT~SDVgk----lGRLVIPKk~AEa~LP~Ld~----~~Gi~--L~veDi~tGkvW~FRys~RYW~N----nkS 637 (721)
...|.|.|++.|++. -++|.|||..++.+||.|.. +..+. +.+.|.+...+ .+++ .|+-| +.+
T Consensus 18 ~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~t-d~~~--twYn~R~~~~tR 94 (404)
T 1na6_A 18 YFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDS-EARA--IYYNSAHFGKTR 94 (404)
T ss_dssp EEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCE-EEEE--EEECGGGTTSCC
T ss_pred chheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceE-EEEE--EEecccccCCCC
Confidence 578999999999995 36899999879999988862 22222 33344434444 8888 77731 455
Q ss_pred CceeecChhH-HhhhcCCCCCCEEEEEEe
Q 038867 638 RMYLLENTGD-FVKANGLQEGDFIVIYSD 665 (721)
Q Consensus 638 RmYLLTGWsd-FVRsKgLqaGD~IVFyrd 665 (721)
..|.|+.|.. +.=.+...+||.++|-+.
T Consensus 95 nEyRLt~~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 95 NEKRITRWGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp CEEEEECCCTTSGGGCGGGTTCEEEEEEE
T ss_pred CceEEeecCCCCcccccCCCCCEEEEEEe
Confidence 6788886542 333477889999998765
No 5
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=73.51 E-value=3.6 Score=35.03 Aligned_cols=42 Identities=17% Similarity=0.285 Sum_probs=34.6
Q ss_pred ceeecChhHHhhhcCCCCCCEEEEEEecCCCeEEEEEEEccC
Q 038867 639 MYLLENTGDFVKANGLQEGDFIVIYSDVKCGKYLIRGVKVRQ 680 (721)
Q Consensus 639 mYLLTGWsdFVRsKgLqaGD~IVFyrd~snGky~IggRR~rq 680 (721)
.|.|+==.+++++-+|++||.+.+.-+.++|++.|+.+|++.
T Consensus 24 tyYInIPaeI~kaLgIk~gD~fel~ve~kdgeIvLcykRVKk 65 (68)
T 3o27_A 24 TFYLLIPKDIAEALDIKPDDTFILNMEQKDGDIVLSYKRVKE 65 (68)
T ss_dssp CEEEEECHHHHHHTTCCTTCCEEEEEEEETTEEEEEEEECGG
T ss_pred EEEEeCcHHHHHHhCCCCCCEEEEEEecCCCeEEEEehhhhh
Confidence 344554579999999999999998877779999999998754
No 6
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=50.33 E-value=6.3 Score=34.46 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=16.3
Q ss_pred ccHHHHHHHHHhhhccccCccccC
Q 038867 465 ATKEARKKRMARQRRLSTHPRHQH 488 (721)
Q Consensus 465 ATKEARKkRMARQRR~~shh~~~~ 488 (721)
+-+++-++.++.-..++||||+||
T Consensus 76 ~Gr~~l~~~~~~~~~~~~~~~~~~ 99 (99)
T 2co5_A 76 KGMKEFEELHEFFKKIVCHHHHHH 99 (99)
T ss_dssp HHHHHHHHHHHHHHHHHSSCC---
T ss_pred HHHHHHHHHHHhHHhhhhhccccC
Confidence 345666777788889999988764
No 7
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=48.36 E-value=4 Score=38.01 Aligned_cols=33 Identities=21% Similarity=0.555 Sum_probs=25.4
Q ss_pred hhHHHHHHHHhhcCCCCCChhhhccccchhhhH
Q 038867 232 DDLAMVFLEWLKSNKETVSAEDLRNVKIKKSTI 264 (721)
Q Consensus 232 ddl~~vF~EWLksNke~iSaeDlR~iklkrsTI 264 (721)
-||..-|=+||+.||+.+|+||+-+-+---..|
T Consensus 36 Kel~~kyP~WLe~nk~~l~~Ed~~RY~kQ~~lv 68 (126)
T 2wl8_A 36 KEITEKYPEWLQSHRESLPPEQFEKYQEQHSVM 68 (126)
T ss_dssp HHHHTTHHHHHHHHGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHhCcccCCHHHHHHHHHHHHHH
Confidence 466777999999999999999987655433333
No 8
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=36.43 E-value=36 Score=29.30 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=20.4
Q ss_pred hcCCCCCCEEEEEEecCCCeEEEEEE
Q 038867 651 ANGLQEGDFIVIYSDVKCGKYLIRGV 676 (721)
Q Consensus 651 sKgLqaGD~IVFyrd~snGky~IggR 676 (721)
-.+|++||.|.|.-....|.|.|..-
T Consensus 59 l~~lk~Gd~V~F~~~~~~~~~~it~i 84 (88)
T 2vb2_X 59 MSEIKTGDKVAFNFVQQGNLSLLQDI 84 (88)
T ss_dssp ECCCCTTCEEEEEEEEETTEEEEEEE
T ss_pred hhcCCCCCEEEEEEEEeCCEEEEEEE
Confidence 47899999999976656788887543
No 9
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=35.06 E-value=42 Score=28.37 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=20.3
Q ss_pred hcCCCCCCEEEEEEecCCCeEEEEEE
Q 038867 651 ANGLQEGDFIVIYSDVKCGKYLIRGV 676 (721)
Q Consensus 651 sKgLqaGD~IVFyrd~snGky~IggR 676 (721)
-.+|++||.|.|.-....|.|.|..-
T Consensus 51 l~~lk~Gd~V~F~~~~~~~~~~it~i 76 (80)
T 2qcp_X 51 MSEIKTGDKVAFNFVQQGNLSLLQDI 76 (80)
T ss_dssp ECCCCTTCEEEEEEEEETTEEEEEEE
T ss_pred hhcCCCCCEEEEEEEEeCCEEEEEEE
Confidence 57899999999966656778887543
No 10
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=33.65 E-value=8.8 Score=40.12 Aligned_cols=15 Identities=53% Similarity=0.993 Sum_probs=0.0
Q ss_pred hhhccccCccccCCC
Q 038867 476 RQRRLSTHPRHQHHH 490 (721)
Q Consensus 476 RQRR~~shh~~~~~~ 490 (721)
|.||---||||||||
T Consensus 493 r~RR~~~~~~~~~~~ 507 (510)
T 4grv_A 493 RHRRKAHHHHHHHHH 507 (510)
T ss_dssp ---------------
T ss_pred CCCCccccccccccc
Confidence 445544444444443
No 11
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=32.35 E-value=21 Score=29.13 Aligned_cols=21 Identities=48% Similarity=0.610 Sum_probs=16.7
Q ss_pred hhHHHHHHHHhhcCCCCCChhhhccccchhhhHHHHHHHh
Q 038867 232 DDLAMVFLEWLKSNKETVSAEDLRNVKIKKSTIECAAKRL 271 (721)
Q Consensus 232 ddl~~vF~EWLksNke~iSaeDlR~iklkrsTIE~Aa~RL 271 (721)
+|-+.+|-||-| -.|.|||-|
T Consensus 6 eeaaklfeewkk-------------------laeeaakll 26 (62)
T 2i7u_A 6 EEAAKLFEEWKK-------------------LAEEAAKLL 26 (62)
T ss_dssp HHHHHHHHHHHH-------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHH-------------------HHHHHHHHH
Confidence 678899999954 468889988
No 12
>2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A
Probab=31.87 E-value=18 Score=38.01 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=11.8
Q ss_pred HHHHHHHHHhhhccccCccccCCCC
Q 038867 467 KEARKKRMARQRRLSTHPRHQHHHN 491 (721)
Q Consensus 467 KEARKkRMARQRR~~shh~~~~~~n 491 (721)
+.|++.=-+-+..|+-||||||||+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (340)
T 2oxn_A 315 QQASANMQRLIEQFSEHHHHHHHHH 339 (340)
T ss_dssp HHHHHHHHHHHHHHCSTTC------
T ss_pred HHHHHHHHHHHHHHHhhcccccccC
Confidence 4455554455667777777666554
No 13
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=26.88 E-value=24 Score=26.09 Aligned_cols=17 Identities=29% Similarity=0.792 Sum_probs=13.2
Q ss_pred hhHHHHHHHHhhcCCCC
Q 038867 232 DDLAMVFLEWLKSNKET 248 (721)
Q Consensus 232 ddl~~vF~EWLksNke~ 248 (721)
+-.+.-|++||++.|-+
T Consensus 8 ~~aakdFv~WL~ngk~~ 24 (31)
T 3c5t_B 8 EEAVRLFIEWLKNGGPS 24 (31)
T ss_dssp HHHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 44577899999998744
No 14
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=26.82 E-value=1.3e+02 Score=26.15 Aligned_cols=43 Identities=23% Similarity=0.181 Sum_probs=28.3
Q ss_pred EEEEEEcCCCcEEEEEEeeeeeCCCCCCceeecChhHHhhhcCCCCCCEEEEEE---ecCCCeEEEEEEE
Q 038867 611 SIAMEDIGTSRVWNMRYSFRFWPNNKSRMYLLENTGDFVKANGLQEGDFIVIYS---DVKCGKYLIRGVK 677 (721)
Q Consensus 611 ~L~veDi~tGkvW~FRys~RYW~NnkSRmYLLTGWsdFVRsKgLqaGD~IVFyr---d~snGky~IggRR 677 (721)
.+.+-|. +| ..++ +.|- .. |++||+|.|.. +...|++.|.+-|
T Consensus 41 ~~~l~De-TG---~I~~--tlW~--~~----------------l~~Gdvv~i~ng~v~~~~g~~~L~v~~ 86 (106)
T 2k75_A 41 QGYIEDD-TA---RIRI--SSFG--KQ----------------LQDSDVVRIDNARVAQFNGYLSLSVGD 86 (106)
T ss_dssp EEEEECS-SC---EEEE--EEES--SC----------------CCTTEEEEEEEEEEEEETTEEEEEECT
T ss_pred EEEEEcC-CC---eEEE--EEEc--Cc----------------cCCCCEEEEEeeEEeEECCEEEEEECC
Confidence 6788886 88 3566 6672 21 99999998852 1236766665433
No 15
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=24.43 E-value=47 Score=26.89 Aligned_cols=19 Identities=37% Similarity=0.590 Sum_probs=14.9
Q ss_pred CCCCCCCceeecHhHHhhh
Q 038867 582 SDVGNLGRIVLPKKEAETH 600 (721)
Q Consensus 582 SDVgklGRLVIPKk~AEa~ 600 (721)
.-|++.|+++|||+-.+.+
T Consensus 16 ~kv~~kGqItIPkeiR~~L 34 (59)
T 1yfb_A 16 RKVDELGRVVIPIELRRTL 34 (59)
T ss_dssp EECCTTCEEECCHHHHHHT
T ss_pred EEECCCCEEEeCHHHHHHc
Confidence 3456679999999888774
No 16
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=24.14 E-value=16 Score=34.70 Aligned_cols=7 Identities=57% Similarity=1.175 Sum_probs=0.0
Q ss_pred CccccCC
Q 038867 483 HPRHQHH 489 (721)
Q Consensus 483 hh~~~~~ 489 (721)
|||||||
T Consensus 3 ~~~~~~~ 9 (291)
T 2yjp_A 3 HHHHHHH 9 (291)
T ss_dssp -------
T ss_pred ccccccc
Confidence 4444433
No 17
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=24.11 E-value=33 Score=24.48 Aligned_cols=15 Identities=40% Similarity=0.760 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhh
Q 038867 278 MKQLLKLILEWVQTN 292 (721)
Q Consensus 278 ~kqLLKLIL~WVq~~ 292 (721)
||.+|+||-+.+|.|
T Consensus 4 MkDvlql~qQy~qsh 18 (26)
T 1kdl_A 4 MKDVLRLIEQYVSSH 18 (26)
T ss_dssp HHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999999999875
No 18
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=23.85 E-value=17 Score=36.78 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=12.4
Q ss_pred HhhhcCCCCCCE-EEEEEecCCCe
Q 038867 648 FVKANGLQEGDF-IVIYSDVKCGK 670 (721)
Q Consensus 648 FVRsKgLqaGD~-IVFyrd~snGk 670 (721)
|+..+.+..||+ | |.+....|+
T Consensus 264 ~~~~~~~~~gdi~l-i~~~g~~G~ 286 (406)
T 1ydx_A 264 FVAEPNTEKDTISI-ISNGYSLGN 286 (406)
T ss_dssp EESSCSBCSSEEEE-ECSSTTTTC
T ss_pred eeecccCCCCCEEE-EECCCCCce
Confidence 444467888997 4 444333444
No 19
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=23.84 E-value=9.2 Score=32.28 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=8.9
Q ss_pred HHHHHhhhccccCcccc
Q 038867 471 KKRMARQRRLSTHPRHQ 487 (721)
Q Consensus 471 KkRMARQRR~~shh~~~ 487 (721)
++++..|||++-|||+|
T Consensus 60 gr~~~~~~~~~~~~~~~ 76 (77)
T 2jt1_A 60 GKGVPGLWRLLEHHHHH 76 (77)
T ss_dssp SSSSCCEEEECC-----
T ss_pred CCCcHHHHHHHHhhccC
Confidence 45677788888877655
No 20
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=23.72 E-value=26 Score=30.78 Aligned_cols=10 Identities=60% Similarity=1.145 Sum_probs=5.5
Q ss_pred ccCccccCCC
Q 038867 481 STHPRHQHHH 490 (721)
Q Consensus 481 ~shh~~~~~~ 490 (721)
++|||+||||
T Consensus 3 ~~~~~~~~~~ 12 (113)
T 1tvm_A 3 SSHHHHHHHH 12 (113)
T ss_dssp SSCCCSSCCC
T ss_pred cccccchhhh
Confidence 3566655554
No 21
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=23.31 E-value=17 Score=38.43 Aligned_cols=8 Identities=63% Similarity=1.277 Sum_probs=0.0
Q ss_pred CccccCCC
Q 038867 483 HPRHQHHH 490 (721)
Q Consensus 483 hh~~~~~~ 490 (721)
||||||||
T Consensus 3 ~~~~~~~~ 10 (357)
T 4g1u_A 3 HHHHHHHH 10 (357)
T ss_dssp --------
T ss_pred Cccccccc
Confidence 44444443
No 22
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1
Probab=22.87 E-value=18 Score=38.10 Aligned_cols=6 Identities=33% Similarity=0.672 Sum_probs=2.7
Q ss_pred Cceeec
Q 038867 588 GRIVLP 593 (721)
Q Consensus 588 GRLVIP 593 (721)
|.|+|-
T Consensus 77 G~Li~~ 82 (332)
T 2es4_D 77 GRLART 82 (332)
T ss_dssp SSBCCS
T ss_pred CCcccc
Confidence 444443
No 23
>1lsh_B Lipovitellin (LV-2); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: f.7.1.1
Probab=22.36 E-value=18 Score=37.82 Aligned_cols=12 Identities=50% Similarity=0.913 Sum_probs=0.0
Q ss_pred CCCCCchhhhhh
Q 038867 392 GYAAPPSEYHML 403 (721)
Q Consensus 392 p~~p~~~~~~m~ 403 (721)
+|.=|..|||.|
T Consensus 277 ~~~mp~sCyhVL 288 (319)
T 1lsh_B 277 NYDMPESCYHVL 288 (319)
T ss_dssp ------------
T ss_pred cCCCCCceeEEE
Confidence 344444555544
No 24
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=21.68 E-value=74 Score=29.50 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=23.7
Q ss_pred hhHHhhhcCCCCCCEEEEE-----EecCCCeEEEEEEEcc
Q 038867 645 TGDFVKANGLQEGDFIVIY-----SDVKCGKYLIRGVKVR 679 (721)
Q Consensus 645 WsdFVRsKgLqaGD~IVFy-----rd~snGky~IggRR~r 679 (721)
...|+| ..+.||.++|| .....+.-++|+.++.
T Consensus 31 arn~lr--~Mk~GD~~~fY~~~~~hs~~~~~~ivGi~eV~ 68 (147)
T 2p5d_A 31 YKNTIN--KVKVGDKLIIYEIQRSGKDYKPPYIRGVYEVV 68 (147)
T ss_dssp GHHHHT--TCCTTCEEEEEECCBCSTTCBCCEEEEEEEEC
T ss_pred HHHHHH--hCCCCCEEEEEEecccCCCCCCCEEEEEEEEe
Confidence 467887 79999999999 3211236788887774
No 25
>3seo_A VOPL C terminal domain protein; alpha helix, structural protein; 2.31A {Vibrio parahaemolyticus} PDB: 3ryl_A
Probab=21.11 E-value=32 Score=34.97 Aligned_cols=44 Identities=30% Similarity=0.292 Sum_probs=21.4
Q ss_pred ChhHHHHHHHHhhc-----CCCCCChhhhccccchhhhHHHHHHHhCCcHH
Q 038867 231 SDDLAMVFLEWLKS-----NKETVSAEDLRNVKIKKSTIECAAKRLGGGKE 276 (721)
Q Consensus 231 ~ddl~~vF~EWLks-----Nke~iSaeDlR~iklkrsTIE~Aa~RLGggke 276 (721)
+.=+..+.-|-||= --|-||+|-++ +=+++-||-|-+||-|||.
T Consensus 62 ~~yvqafc~Eilk~pDcyK~ADV~S~espk--~~~~sVievAlkRL~~gr~ 110 (241)
T 3seo_A 62 HRYVQAFCREILKYPDCYKSADVASPESPK--SGGGSVIDVALKRLQTGRE 110 (241)
T ss_dssp SHHHHHHHHHHSSSCC--------------------CHHHHHHHHHTTTTT
T ss_pred cHHHHHHHHHHHhcchhhhhcccCCCCCCC--CCCCcHHHHHHHHHccCcc
Confidence 44455555565552 34678999999 7889999999999999974
No 26
>1z67_A Hypothetical protein S4005; structural genomics, shigella flexneri protein structure initiative, midwest center for structural genomics; 1.45A {Shigella flexneri 2A} SCOP: a.259.1.1
Probab=20.01 E-value=31 Score=32.41 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhh
Q 038867 264 IECAAKRLGGGKEAMKQLLKLILEWVQTN 292 (721)
Q Consensus 264 IE~Aa~RLGggkeg~kqLLKLIL~WVq~~ 292 (721)
....+..|||+ ..++|++||+||+++
T Consensus 7 ld~l~~~lgG~---~~~~l~~il~~v~~~ 32 (135)
T 1z67_A 7 FDEVVGAFLKG---DAGKYQAILSWVEEQ 32 (135)
T ss_dssp HHHHHHHHHHT---TTTHHHHHHHHHHHT
T ss_pred HHHHHHHhccc---hhHHHHHHHHHHHhC
Done!