BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038868
(355 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1K8K|A Chain A, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|A Chain A, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|A Chain A, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|A Chain A, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|A Chain A, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|A Chain A, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|A Chain A, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|A Chain A, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|A Chain A, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|A Chain A, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
pdb|3DXK|A Chain A, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|A Chain A, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|A Chain A, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|A Chain A, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|A Chain A, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|A Chain A, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 418
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 12/81 (14%)
Query: 41 ISAISKRGLEFDIHIKVARFLRQYPSFFEEFTGPLYSLPWFKLTQEAIEIDREEKRVYEE 100
I+AISK+ EF I + RFL F EF P ++ P ++ E I +
Sbjct: 259 INAISKK--EFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVI----------QN 306
Query: 101 CRDDLRERLKRFVLMSKEKVL 121
C D+R L + +++S +
Sbjct: 307 CPIDVRRPLYKNIVLSGGSTM 327
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
Length = 234
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 3 WKKDSYFDSIERIHKSVELKPILALKNVIAQEPSCSIPISAISKR-------GLEFDIHI 55
W F+ I R + ++ELK + ++ PS S P + R GL + + +
Sbjct: 42 WGNGGVFNCIWRAY-NIELKDGILNLSITDDMPSSSKPYAGAEYRTRDKFGYGL-YQVRM 99
Query: 56 KVARFLRQYPSFFEEFTGPLYSLPW 80
K A+ SFF +TGP++ PW
Sbjct: 100 KPAKNPGIVSSFFT-YTGPVHGTPW 123
>pdb|3S21|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal)
pdb|3S23|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal) Xe Derivative
Length = 345
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 239 VGEKRVVGFLHELLSLFVEHSAQRKKLLCLKKYFGL-PQKVHRAFERHTHL 288
V K+V+G+ E L FV H R K FG+ P KV F H ++
Sbjct: 253 VAAKQVLGWAVEELDQFVIHQVSRPHTAAFVKSFGIDPAKVMTIFGEHGNI 303
>pdb|3ROW|A Chain A, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3ROW|B Chain B, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3S1Z|A Chain A, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S1Z|B Chain B, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S20|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
pdb|3S20|B Chain B, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
Length = 344
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 239 VGEKRVVGFLHELLSLFVEHSAQRKKLLCLKKYFGL-PQKVHRAFERHTHL 288
V K+V+G+ E L FV H R K FG+ P KV F H ++
Sbjct: 252 VAAKQVLGWAVEELDQFVIHQVSRPHTAAFVKSFGIDPAKVMTIFGEHGNI 302
>pdb|4EMY|A Chain A, Crystal Structure Of Aminotransferase From Anaerococcus
Prevotii Dsm 20548.
pdb|4EMY|B Chain B, Crystal Structure Of Aminotransferase From Anaerococcus
Prevotii Dsm 20548.
pdb|4EMY|C Chain C, Crystal Structure Of Aminotransferase From Anaerococcus
Prevotii Dsm 20548.
pdb|4EMY|D Chain D, Crystal Structure Of Aminotransferase From Anaerococcus
Prevotii Dsm 20548
Length = 413
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 16/115 (13%)
Query: 80 WFKLTQEA----IEIDR-EEKRVYEECRDDLRERLKR----FVLMSKE-KVLPLKIIKGM 129
W T A IE++R E K++YE+ DLR LK FV +KE K+ + G
Sbjct: 298 WSNGTHAAQNILIELERAENKKIYEQELVDLRNXLKSRADVFVTAAKENKLTXIPYFGG- 356
Query: 130 EWYLGLPSDFLEHFEVNLDGSFRFVEMEDGLKGL--AVENIGEEKVLSVLQRNAM 182
++ +P+D + F++ D + KG+ A+ +GEEK+ ++QR A
Sbjct: 357 -FFTFIPTD--KAFDIVKDLEKENIFTIPSAKGIRVAICGVGEEKIPKLVQRLAF 408
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,248,671
Number of Sequences: 62578
Number of extensions: 409831
Number of successful extensions: 850
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 849
Number of HSP's gapped (non-prelim): 6
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)