BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038868
         (355 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5ISC6|HEBP1_PIG Heme-binding protein 1 OS=Sus scrofa GN=HEBP1 PE=2 SV=1
          Length = 189

 Score = 34.7 bits (78), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 9/85 (10%)

Query: 149 GSFRFVEMEDGLKGLAVENIGEEKVLSVLQRNAMKRGLYVGEPME-PIEFPFFPQKGLRL 207
           G F  VEM D      V+    E +  V++         +G  M  PI F  FP  G  L
Sbjct: 39  GKFATVEMTD----KPVDEALREAMPKVMKYVGGSNDKGIGMGMTVPISFAVFPSDGGSL 94

Query: 208 KRKIDHWF---NEFQKVPYVSPYED 229
           ++K+  WF   NEFQ  P V P +D
Sbjct: 95  QKKLKVWFRIPNEFQSNPPV-PSDD 118


>sp|Q2GIT5|SECA_ANAPZ Protein translocase subunit SecA OS=Anaplasma phagocytophilum
           (strain HZ) GN=secA PE=3 SV=1
          Length = 873

 Score = 34.3 bits (77), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 46/156 (29%)

Query: 153 FVEMEDGLKGLAVENIGEEKVLSVLQRNAMKRGLYVGEPMEPIEFPFFPQKGLRLKRKID 212
           F+ +EDGL    +   G +KV  +L+R  MKRG       E I+  +  +   R ++K++
Sbjct: 582 FLSLEDGL----LRIFGSDKVRGMLKRLGMKRG-------EAIQHKWINRAIERAQKKVE 630

Query: 213 HWFNEFQKVPYVSPYEDYSHLDPDSDVGEKRVVGFLHELLSLFVEHSAQRKKLLCLKKYF 272
               + +K          S L  D  + E+R V F            AQR ++L  + Y 
Sbjct: 631 ARNYDIRK----------SLLRFDDVINEQRKVIF------------AQRNQILDRETYD 668

Query: 273 GLPQKVHRAFERHTHLFYLSLRNNTCTTILKEPFCD 308
            +P             FY +L  +  + I+KE +CD
Sbjct: 669 LVP-------------FYSNLNCDIVSRIIKEKYCD 691


>sp|Q9LNJ0|CNG10_ARATH Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis
           thaliana GN=CNGC10 PE=2 SV=2
          Length = 711

 Score = 33.9 bits (76), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 71/170 (41%), Gaps = 29/170 (17%)

Query: 19  VELKPILALKNVI--AQEPSCSIPISAISKRGLEFDIHIK-VARFLRQYPSFFE------ 69
           ++L  IL L  ++  A  PS + P+S ++K  L+F I  + V R LR YP + E      
Sbjct: 174 IDLLSILPLPQIVVLAVIPSVNQPVSLLTKDYLKFSIIAQYVPRILRMYPLYTEVTRTSG 233

Query: 70  -----EFTGPLYSLPWFKLTQEA-------IEIDREEKRVYEECRDDLRERLKRFVLMSK 117
                 + G  ++L  + L           I ++RE+ R ++E  +  +    +F+    
Sbjct: 234 IVTETAWAGAAWNLSLYMLASHVFGALWYLISVERED-RCWQEACEKTKGCNMKFLYCEN 292

Query: 118 EKVLPLKIIKGMEWYLGLPSDFLEHFEVNLDGSFRFVEMEDGLKGLAVEN 167
           ++ +          +L     FL+  ++     F F    D LK   VE+
Sbjct: 293 DRNVSNN-------FLTTSCPFLDPGDITNSTIFNFGIFTDALKSGVVES 335


>sp|Q5ZL79|NOL11_CHICK Nucleolar protein 11 OS=Gallus gallus GN=NOL11 PE=2 SV=1
          Length = 723

 Score = 32.7 bits (73), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 13/129 (10%)

Query: 132 YLGLPSDFLEHFEVNLDGSFRFVEMEDGLKGLAVENIGEEKVLSVLQRNAMKRGLYVGEP 191
           +L +  D+LE  +VNL+    ++++E   K +  E +       + +      G+     
Sbjct: 517 FLSISDDYLERTDVNLESVISYIDIEPNNKEVKTEVVENGFNTELEEDGCDVTGMKETHM 576

Query: 192 MEPIEF-PFFPQKGLRLKRKIDHWFNEFQKVPYVSPYEDYSHLDPDSDVGEKRVVGFLHE 250
           M+ +EF P  PQK   L   +   ++E   +P++             D+  ++ V FL  
Sbjct: 577 MDSVEFCPVGPQKAALLNAVLHSAYSETFLLPHL------------KDLPAQQAVLFLRY 624

Query: 251 LLSLFVEHS 259
           L  L+V+ S
Sbjct: 625 LHYLYVKCS 633


>sp|Q8PV20|TRUB_METMA Probable tRNA pseudouridine synthase B OS=Methanosarcina mazei
           (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
           / OCM 88) GN=truB PE=3 SV=1
          Length = 338

 Score = 32.0 bits (71), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 38  SIPISAISKRGLEFDIHIKVARFLRQ--YPSFFEEFTGPLYSLPWFK 82
           ++ + A+   G E+  H+K+ R + Q       EEFTGP+Y +P  K
Sbjct: 93  TLAVPALRLSGKEYICHLKLHRAMPQKLVRQVCEEFTGPIYQMPPIK 139


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.141    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,807,563
Number of Sequences: 539616
Number of extensions: 5909022
Number of successful extensions: 14452
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 14449
Number of HSP's gapped (non-prelim): 16
length of query: 355
length of database: 191,569,459
effective HSP length: 118
effective length of query: 237
effective length of database: 127,894,771
effective search space: 30311060727
effective search space used: 30311060727
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)