Query 038868
Match_columns 355
No_of_seqs 136 out of 189
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 04:07:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038868.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038868hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11955 PORR: Plant organelle 100.0 1E-119 2E-124 885.9 28.6 330 3-334 1-333 (335)
2 PF11955 PORR: Plant organelle 99.0 2.4E-09 5.2E-14 106.2 10.7 140 97-293 11-152 (335)
3 PLN03196 MOC1-like protein; Pr 83.0 0.84 1.8E-05 47.9 2.6 51 242-295 323-374 (487)
4 PLN03196 MOC1-like protein; Pr 74.9 3.9 8.5E-05 43.0 4.5 48 250-303 366-416 (487)
5 PF12872 OST-HTH: OST-HTH/LOTU 44.3 33 0.00072 25.8 3.7 51 24-74 7-67 (74)
6 TIGR02337 HpaR homoprotocatech 39.2 2E+02 0.0043 23.6 7.9 76 27-108 33-113 (118)
7 PRK10963 hypothetical protein; 29.3 2E+02 0.0044 26.9 7.1 80 55-136 6-107 (223)
8 PRK10870 transcriptional repre 28.6 2.5E+02 0.0055 25.2 7.3 66 29-98 62-132 (176)
9 PF14567 SUKH_5: SMI1-KNR4 cel 26.5 1.8E+02 0.0038 25.7 5.7 43 121-170 69-111 (132)
10 PF04340 DUF484: Protein of un 25.9 61 0.0013 30.2 2.9 46 55-100 9-61 (225)
11 KOG0423 Ubiquitin-protein liga 23.4 1.1E+02 0.0024 28.4 3.9 76 115-211 1-83 (223)
12 PF11927 DUF3445: Protein of u 22.1 1.3E+02 0.0029 28.8 4.5 124 78-219 9-148 (249)
No 1
>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts. It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].
Probab=100.00 E-value=1e-119 Score=885.91 Aligned_cols=330 Identities=43% Similarity=0.723 Sum_probs=319.5
Q ss_pred cccCcCCchhHHHhhhcccchhHHHHHHHhcCCCCcccchhhhhcCCccCCc-hhHHHHHhhCCCceeeccCCCCCCCce
Q 038868 3 WKKDSYFDSIERIHKSVELKPILALKNVIAQEPSCSIPISAISKRGLEFDIH-IKVARFLRQYPSFFEEFTGPLYSLPWF 81 (355)
Q Consensus 3 w~kD~~lD~~~~v~r~k~lr~v~~lk~li~~~P~~~ipl~~l~k~~~~Lgl~-~~~~~FlrkyP~iF~~~~~~~~~~p~~ 81 (355)
|+||++||+ +|+++|+++++++|+++|+++|+++||+++|++++++||++ +++++||+|||+||++|.++..++|||
T Consensus 1 w~rd~~lD~--~i~~~k~l~~v~~l~~~i~~~p~~~~pl~~l~k~~~~L~l~~~~~~~flrkyP~iF~~~~~~~~~~~~~ 78 (335)
T PF11955_consen 1 WVRDPYLDK--VIEREKRLRFVLRLKDLILSQPSHSLPLRDLSKLRRQLGLKPRKVSRFLRKYPSIFEVFQHPSRSVPWF 78 (335)
T ss_pred CCCchhHHH--HHHhhhhHHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCcccHHHHHHhCCceEEEeccCCCCCceE
Confidence 999999999 99999999999999999999999999999999999999997 999999999999999999988899999
Q ss_pred eccHHHHHHHHHHHHHHHHchHHHHHHHHHHHhccCCCccchhhHHHhHHhcCCCcccchhhhhcCCCCeEEEEcCCCCc
Q 038868 82 KLTQEAIEIDREEKRVYEECRDDLRERLKRFVLMSKEKVLPLKIIKGMEWYLGLPSDFLEHFEVNLDGSFRFVEMEDGLK 161 (355)
Q Consensus 82 rlT~~a~~L~~eE~~v~~~~e~~~v~rLrKLLMMS~~r~LpL~kl~~lr~dLGLP~DF~~~lv~~yP~~Frvv~~~~~~~ 161 (355)
+||++|++|++||+++++++++++|++|+||||||.+++|||++|++++||||||+||+++++++|||+|++|+..++..
T Consensus 79 ~LT~~a~~L~~eE~~~~~~~e~~~v~rL~KLLMMS~~~rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~~~~~~~ 158 (335)
T PF11955_consen 79 RLTPEAEDLLREERRVREEMEPDLVERLRKLLMMSKDRRLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVDLEDGGR 158 (335)
T ss_pred EeCHHHHHHHHHHHHHHHhChHHHHHHHHHHhccCCCCcccHHHHHHHHHHcCCChhhccchhhhCCCCcEEeecCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999778889
Q ss_pred cEEEeecCCCccccHHHHHHHHc--CcccCCCCcccccccCCCCCcccchhHHHHHHhhccCCCCCCCCCCCCCCCCCcc
Q 038868 162 GLAVENIGEEKVLSVLQRNAMKR--GLYVGEPMEPIEFPFFPQKGLRLKRKIDHWFNEFQKVPYVSPYEDYSHLDPDSDV 239 (355)
Q Consensus 162 ~LeLv~wd~elAvs~~E~~~~~~--~~~~~~~~~~~~Fp~~fp~G~~l~k~~~~~l~~fQ~LPy~SPYed~~~l~~~S~~ 239 (355)
+||||+||++||||++|++++.+ +...+...++++||++||+||++++++++|+++||+|||+|||+|+++++++|++
T Consensus 159 ~LeLv~Wd~~LAvs~~E~~~~~~~~~~~~~~~~~~~~Fp~~fp~G~~l~k~~~~~l~~fQ~lPy~SPYed~~~l~~~s~~ 238 (335)
T PF11955_consen 159 YLELVSWDPELAVSALEKRAEKEYREKREDGFDRPLAFPVSFPKGFRLKKKFREWLEEFQKLPYISPYEDASHLDPGSDE 238 (335)
T ss_pred EEEEeecCCccCcCccchhhhhccccccccccCCceeeeecCCCCccccHHHHHHHHHHhcCCCCCCCCCccCCCCCChH
Confidence 99999999999999999999864 2223445788999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhcchhhHhhhhhHHhhhhhhCCcHHHHHHHhhCCCeEEEEeeCCeeeEEecCccCCCCCcccChHHH
Q 038868 240 GEKRVVGFLHELLSLFVEHSAQRKKLLCLKKYFGLPQKVHRAFERHTHLFYLSLRNNTCTTILKEPFCDKYAIEEHPLAR 319 (355)
Q Consensus 240 ~EKRaVaVlHELLSLTveKr~~~~~L~~fr~ef~lp~k~~~~l~rHPgIFYvS~kg~~~TVfLREAY~~~~Liek~Pl~~ 319 (355)
+|||||||+||||||||||||++++|+|||+|||||++++++|+|||||||||+||+|+||||||||++|+|||||||+.
T Consensus 239 ~EKRaVaVlHElLSLTveKr~~~~~L~~fr~ef~lp~k~~~~l~rHPgIFYvS~kg~~~TVfLrEAY~~~~Liek~Pl~~ 318 (335)
T PF11955_consen 239 AEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLPQKFRRLLLRHPGIFYVSLKGKRHTVFLREAYDGGELIEKHPLVV 318 (335)
T ss_pred HHhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhCCcHHHHHHHHhCCCeEEEeccCCceEEEEeeccCCCCCCCCCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 038868 320 VREKYIKLLKQSKVI 334 (355)
Q Consensus 320 ~r~k~~~Lm~~~~~~ 334 (355)
+|+||++||+.|+.+
T Consensus 319 ~r~k~~~Lm~~~~~~ 333 (335)
T PF11955_consen 319 IREKFLELMQEGRRK 333 (335)
T ss_pred HHHHHHHHHhhcccc
Confidence 999999999999554
No 2
>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts. It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].
Probab=98.99 E-value=2.4e-09 Score=106.23 Aligned_cols=140 Identities=20% Similarity=0.256 Sum_probs=110.8
Q ss_pred HHHHchHHHHHHHHHHHhccCCCccchhhHHHhHHhcCCCcccchhhhhcCCCCeEEEEc-CCCCccEEEeecCCCcccc
Q 038868 97 VYEECRDDLRERLKRFVLMSKEKVLPLKIIKGMEWYLGLPSDFLEHFEVNLDGSFRFVEM-EDGLKGLAVENIGEEKVLS 175 (355)
Q Consensus 97 v~~~~e~~~v~rLrKLLMMS~~r~LpL~kl~~lr~dLGLP~DF~~~lv~~yP~~Frvv~~-~~~~~~LeLv~wd~elAvs 175 (355)
+-.+.....|.+|+.+|.-++++.||++.+...+..|||+.-=..+++.+||..|.+... ..+..+..|. +...++.
T Consensus 11 i~~~k~l~~v~~l~~~i~~~p~~~~pl~~l~k~~~~L~l~~~~~~~flrkyP~iF~~~~~~~~~~~~~~LT--~~a~~L~ 88 (335)
T PF11955_consen 11 IEREKRLRFVLRLKDLILSQPSHSLPLRDLSKLRRQLGLKPRKVSRFLRKYPSIFEVFQHPSRSVPWFRLT--PEAEDLL 88 (335)
T ss_pred HHhhhhHHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCcccHHHHHHhCCceEEEeccCCCCCceEEeC--HHHHHHH
Confidence 445566778999999999999999999999999999999633334599999999999873 3344567776 3333332
Q ss_pred HHHHHHHHcCcccCCCCcccccccCCCCCcccchhHHHHHHhhccCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcc
Q 038868 176 VLQRNAMKRGLYVGEPMEPIEFPFFPQKGLRLKRKIDHWFNEFQKVPYVSPYEDYSHLDPDSDVGEKRVVGFLHELLSLF 255 (355)
Q Consensus 176 ~~E~~~~~~~~~~~~~~~~~~Fp~~fp~G~~l~k~~~~~l~~fQ~LPy~SPYed~~~l~~~S~~~EKRaVaVlHELLSLT 255 (355)
.-|.++. .+.|--+|..+.-||.|+
T Consensus 89 ~eE~~~~-------------------------------------------------------~~~e~~~v~rL~KLLMMS 113 (335)
T PF11955_consen 89 REERRVR-------------------------------------------------------EEMEPDLVERLRKLLMMS 113 (335)
T ss_pred HHHHHHH-------------------------------------------------------HhChHHHHHHHHHHhccC
Confidence 2222221 223456788899999999
Q ss_pred hhhHhhhhhHHhhhhhhCCcHHHHHH-HhhCCCeEEEEe
Q 038868 256 VEHSAQRKKLLCLKKYFGLPQKVHRA-FERHTHLFYLSL 293 (355)
Q Consensus 256 veKr~~~~~L~~fr~ef~lp~k~~~~-l~rHPgIFYvS~ 293 (355)
..+++.+++|.|++.+||||..|..- +-+||+.|=|..
T Consensus 114 ~~~rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~ 152 (335)
T PF11955_consen 114 KDRRLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVD 152 (335)
T ss_pred CCCcccHHHHHHHHHHcCCChhhccchhhhCCCCcEEee
Confidence 99999999999999999999999885 799999999988
No 3
>PLN03196 MOC1-like protein; Provisional
Probab=83.03 E-value=0.84 Score=47.92 Aligned_cols=51 Identities=25% Similarity=0.302 Sum_probs=38.2
Q ss_pred hHHHHHHHHHhhcchhhHhhhhhHHhhhhhhCCc-HHHHHHHhhCCCeEEEEeeC
Q 038868 242 KRVVGFLHELLSLFVEHSAQRKKLLCLKKYFGLP-QKVHRAFERHTHLFYLSLRN 295 (355)
Q Consensus 242 KRaVaVlHELLSLTveKr~~~~~L~~fr~ef~lp-~k~~~~l~rHPgIFYvS~kg 295 (355)
.++|.-+-.+|++..+| -..++..|++ +|++ +.+..|+.++|.++-.|.+.
T Consensus 323 ~~~v~k~P~il~lSe~k--l~~kvefL~~-~Gls~edI~~mv~k~P~lL~~S~~~ 374 (487)
T PLN03196 323 GRVIEKLPQIVSLNRNV--ALKHVEFLRG-RGFSAQDVAKMVVRCPQILALNLEI 374 (487)
T ss_pred HHHHHhcchhhcccHHH--HHHHHHHHHH-cCCCHHHHHHHHHhCCceeeccHHH
Confidence 34555566788888664 3457777775 9998 56778999999999999853
No 4
>PLN03196 MOC1-like protein; Provisional
Probab=74.91 E-value=3.9 Score=43.00 Aligned_cols=48 Identities=17% Similarity=0.258 Sum_probs=37.1
Q ss_pred HHhhcchhhHhhhhhHHhhhhhhCCcHHHHHHHhhCCCeEEEEeeCC---eeeEEec
Q 038868 250 ELLSLFVEHSAQRKKLLCLKKYFGLPQKVHRAFERHTHLFYLSLRNN---TCTTILK 303 (355)
Q Consensus 250 ELLSLTveKr~~~~~L~~fr~ef~lp~k~~~~l~rHPgIFYvS~kg~---~~TVfLR 303 (355)
-+|++.+ ..-..++.-|.+++|.| .+.+.++|.+|-.|+... ||.| |+
T Consensus 366 ~lL~~S~--~~l~~k~dFlvneMg~~---~~~Iv~fP~~LsySLEkRI~PR~~~-L~ 416 (487)
T PLN03196 366 QILALNL--EIMKPSLEFFKKEMKRP---LKELVEFPAYFTYGLESRIKPRYER-VA 416 (487)
T ss_pred ceeeccH--HHHHHHHHHHHHHhCCC---HHHHHhChHHhccChhhhhHHHHHH-HH
Confidence 4566666 45577899999999999 566899999999998653 6775 44
No 5
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=44.31 E-value=33 Score=25.79 Aligned_cols=51 Identities=14% Similarity=0.230 Sum_probs=32.6
Q ss_pred hHHHHHHHhcCCC--CcccchhhhhcC----CccCCc----hhHHHHHhhCCCceeeccCC
Q 038868 24 ILALKNVIAQEPS--CSIPISAISKRG----LEFDIH----IKVARFLRQYPSFFEEFTGP 74 (355)
Q Consensus 24 v~~lk~li~~~P~--~~ipl~~l~k~~----~~Lgl~----~~~~~FlrkyP~iF~~~~~~ 74 (355)
.-.|+++|.+.++ +.++++.+...- ..+... .++..||+..|++|++-..+
T Consensus 7 ~~~l~~ll~~~~~~~g~v~ls~l~~~~~~~~~~f~~~~yG~~~l~~ll~~~~~~~~i~~~~ 67 (74)
T PF12872_consen 7 KKLLRELLESQKGEDGWVSLSQLGQEYKKKYPDFDPRDYGFSSLSELLESLPDVVEIEERQ 67 (74)
T ss_dssp HHHHHHHHHHTCTTTSSEEHHHHHHHHHHHHTT--TCCTTSSSHHHHHHT-TTTEEEEEEE
T ss_pred HHHHHHHHHhCcCCCceEEHHHHHHHHHHHCCCCCccccCCCcHHHHHHhCCCeEEEeeeC
Confidence 3457778856654 479999885432 233333 56899999999999994443
No 6
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=39.19 E-value=2e+02 Score=23.63 Aligned_cols=76 Identities=13% Similarity=0.161 Sum_probs=47.6
Q ss_pred HHHHHhcCCCCcccchhhhhcCCccCCc----hhHHHHHhhCCCceeeccCCCC-CCCceeccHHHHHHHHHHHHHHHHc
Q 038868 27 LKNVIAQEPSCSIPISAISKRGLEFDIH----IKVARFLRQYPSFFEEFTGPLY-SLPWFKLTQEAIEIDREEKRVYEEC 101 (355)
Q Consensus 27 lk~li~~~P~~~ipl~~l~k~~~~Lgl~----~~~~~FlrkyP~iF~~~~~~~~-~~p~~rlT~~a~~L~~eE~~v~~~~ 101 (355)
+-..|..+| .++++++++ .+|+. .++..=|.+- ++-+-..+|.+ +...+.||++|.++..+=..+..+.
T Consensus 33 iL~~l~~~~--~~t~~ela~---~~~~~~~tvs~~l~~Le~~-GlI~r~~~~~D~R~~~v~LT~~G~~~~~~~~~~~~~~ 106 (118)
T TIGR02337 33 ILRILAEQG--SMEFTQLAN---QACILRPSLTGILARLERD-GLVTRLKASNDQRRVYISLTPKGQALYASLSPQIEEI 106 (118)
T ss_pred HHHHHHHcC--CcCHHHHHH---HhCCCchhHHHHHHHHHHC-CCEEeccCCCCCCeeEEEECHhHHHHHHHhhHHHHHH
Confidence 445555554 466777776 67776 3333333333 44444455543 6678999999999998877777666
Q ss_pred hHHHHHH
Q 038868 102 RDDLRER 108 (355)
Q Consensus 102 e~~~v~r 108 (355)
...+...
T Consensus 107 ~~~~~~~ 113 (118)
T TIGR02337 107 YAAIEER 113 (118)
T ss_pred HHHHHHH
Confidence 5555443
No 7
>PRK10963 hypothetical protein; Provisional
Probab=29.26 E-value=2e+02 Score=26.94 Aligned_cols=80 Identities=24% Similarity=0.189 Sum_probs=48.0
Q ss_pred hhHHHHHhhCCCceeec---------cCCCCCCCceeccHHHHHHHHHHHHHHHHchHH----------HHHHHHHH---
Q 038868 55 IKVARFLRQYPSFFEEF---------TGPLYSLPWFKLTQEAIEIDREEKRVYEECRDD----------LRERLKRF--- 112 (355)
Q Consensus 55 ~~~~~FlrkyP~iF~~~---------~~~~~~~p~~rlT~~a~~L~~eE~~v~~~~e~~----------~v~rLrKL--- 112 (355)
..|.+||+.+|..|..+ +||.. .-+.|-+...+.++++-.-++..-.. +-.++.+|
T Consensus 6 ~~V~~yL~~~PdFf~~h~~Ll~~L~lph~~~--gaVSL~ErQ~~~LR~r~~~Le~~l~~Li~~A~~Ne~l~~~~~~l~l~ 83 (223)
T PRK10963 6 RAVVDYLLQNPDFFIRNARLVEQMRVPHPVR--GTVSLVEWQMARQRNHIHVLEEEMTLLMEQAIANEDLFYRLLPLQSR 83 (223)
T ss_pred HHHHHHHHHCchHHhhCHHHHHhccCCCCCC--CeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999875 23322 37899999888888776655442211 22333332
Q ss_pred HhccCCCccchhhHHHhHHhcCCC
Q 038868 113 VLMSKEKVLPLKIIKGMEWYLGLP 136 (355)
Q Consensus 113 LMMS~~r~LpL~kl~~lr~dLGLP 136 (355)
||-+.+=.=-+..|..++.+|+++
T Consensus 84 Ll~a~~~~~l~~~L~~~~~~f~~~ 107 (223)
T PRK10963 84 LAAADSLQDMLMRLHRWARDLGLA 107 (223)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCC
Confidence 333433333344555556666665
No 8
>PRK10870 transcriptional repressor MprA; Provisional
Probab=28.59 E-value=2.5e+02 Score=25.18 Aligned_cols=66 Identities=15% Similarity=0.025 Sum_probs=38.0
Q ss_pred HHHhcCCCCcccchhhhhcCCccCCc-hhHHHHH---hhCCCceeeccCCCC-CCCceeccHHHHHHHHHHHHHH
Q 038868 29 NVIAQEPSCSIPISAISKRGLEFDIH-IKVARFL---RQYPSFFEEFTGPLY-SLPWFKLTQEAIEIDREEKRVY 98 (355)
Q Consensus 29 ~li~~~P~~~ipl~~l~k~~~~Lgl~-~~~~~Fl---rkyP~iF~~~~~~~~-~~p~~rlT~~a~~L~~eE~~v~ 98 (355)
..|...+++.++.++|++ .+|++ ..+...| .+---|= -..+|.+ +.-.+.||++|.+++.+=....
T Consensus 62 ~~L~~~~~~~it~~eLa~---~l~l~~~tvsr~v~rLe~kGlV~-R~~~~~DrR~~~v~LT~~G~~~~~~i~~~~ 132 (176)
T PRK10870 62 ITLESQENHSIQPSELSC---ALGSSRTNATRIADELEKRGWIE-RRESDNDRRCLHLQLTEKGHEFLREVLPPQ 132 (176)
T ss_pred HHHhcCCCCCcCHHHHHH---HHCCCHHHHHHHHHHHHHCCCEE-ecCCCCCCCeeEEEECHHHHHHHHHHHHHH
Confidence 334445566677777766 77787 3333332 2222222 2234433 6779999999999987643333
No 9
>PF14567 SUKH_5: SMI1-KNR4 cell-wall; PDB: 2PAG_A.
Probab=26.48 E-value=1.8e+02 Score=25.65 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=30.1
Q ss_pred cchhhHHHhHHhcCCCcccchhhhhcCCCCeEEEEcCCCCccEEEeecCC
Q 038868 121 LPLKIIKGMEWYLGLPSDFLEHFEVNLDGSFRFVEMEDGLKGLAVENIGE 170 (355)
Q Consensus 121 LpL~kl~~lr~dLGLP~DF~~~lv~~yP~~Frvv~~~~~~~~LeLv~wd~ 170 (355)
.-|-.+..-.|+.|||.++.- ++..--+||.+. ++| +++.|+-
T Consensus 69 ~~l~e~~~~ar~~glP~~~ip-ice~~~~yYcl~--~~g----~V~~W~~ 111 (132)
T PF14567_consen 69 TYLPEVTADARSIGLPRELIP-ICEDGGDYYCLD--QEG----EVVYWSH 111 (132)
T ss_dssp TBHHHHHHHHHHHT--TTSEE-EEEETTEEEEE---TTS-----EEEE--
T ss_pred ccHHHHHHHHHHcCCChhhee-EEecCCcEEEEe--CCC----eEEEecC
Confidence 447777777788999999999 999999999996 344 6888874
No 10
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=25.89 E-value=61 Score=30.18 Aligned_cols=46 Identities=39% Similarity=0.463 Sum_probs=13.9
Q ss_pred hhHHHHHhhCCCceeeccC-------CCCCCCceeccHHHHHHHHHHHHHHHH
Q 038868 55 IKVARFLRQYPSFFEEFTG-------PLYSLPWFKLTQEAIEIDREEKRVYEE 100 (355)
Q Consensus 55 ~~~~~FlrkyP~iF~~~~~-------~~~~~p~~rlT~~a~~L~~eE~~v~~~ 100 (355)
..|.+||+++|..|..+.+ |...---+.|.+...+.++++-+-+++
T Consensus 9 ~~V~~yL~~~PdFf~~~~~ll~~l~~ph~~~~avSL~erQ~~~LR~~~~~L~~ 61 (225)
T PF04340_consen 9 EDVAAYLRQHPDFFERHPELLAELRLPHPSGGAVSLVERQLERLRERNRQLEE 61 (225)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHhCHHHHHHcCCCCCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 5678999999999987642 111112567777777777766665544
No 11
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.38 E-value=1.1e+02 Score=28.41 Aligned_cols=76 Identities=22% Similarity=0.354 Sum_probs=42.6
Q ss_pred ccCCCccchhhHHHhHHhcCCCcccchhhhhcCCCCeEEEEcCCCCccEEEeecCCCccccHHHHHHHH-cCc-ccC---
Q 038868 115 MSKEKVLPLKIIKGMEWYLGLPSDFLEHFEVNLDGSFRFVEMEDGLKGLAVENIGEEKVLSVLQRNAMK-RGL-YVG--- 189 (355)
Q Consensus 115 MS~~r~LpL~kl~~lr~dLGLP~DF~~~lv~~yP~~Frvv~~~~~~~~LeLv~wd~elAvs~~E~~~~~-~~~-~~~--- 189 (355)
|..+.-||-+.|..+..++ +++-..-||-.+|+..+.+ +|.++..... .|. |.+
T Consensus 1 m~snenlpp~vik~~~kEl-------~~l~~~PPdGIKV~~NeeD--------------~tdiqa~IeGP~GTPYa~GlF 59 (223)
T KOG0423|consen 1 MASNENLPPNVIKQLAKEL-------KSLDESPPDGIKVVVNEED--------------FTDIQADIEGPVGTPYANGLF 59 (223)
T ss_pred CCcccCCChHHHHHHHHHH-------HhcccCCCCceEEecChHH--------------hHHHHhhccCCCCCcccccee
Confidence 4445677888888877775 4455556666666543322 4555432210 011 110
Q ss_pred --CCCcccccccCCCCCcccchhH
Q 038868 190 --EPMEPIEFPFFPQKGLRLKRKI 211 (355)
Q Consensus 190 --~~~~~~~Fp~~fp~G~~l~k~~ 211 (355)
+-...-.||.+.|+||.+.+-+
T Consensus 60 RmKL~L~kDFP~sPPKgYFlTKIF 83 (223)
T KOG0423|consen 60 RMKLALSKDFPHSPPKGYFLTKIF 83 (223)
T ss_pred eehhhhcCCCCCCCCcceeeeeec
Confidence 1111235999999999998755
No 12
>PF11927 DUF3445: Protein of unknown function (DUF3445); InterPro: IPR021848 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 264 to 418 amino acids in length. This protein has a conserved RLP sequence motif. This protein has two completely conserved R residues that may be functionally important.
Probab=22.12 E-value=1.3e+02 Score=28.81 Aligned_cols=124 Identities=14% Similarity=0.141 Sum_probs=65.6
Q ss_pred CCceeccHHHHHHHHHHHHHHHHchHHHHHHHHHHHhccCCCccchhhHHHhHHhcCCCccc-chhhhhcCCCCeEEEEc
Q 038868 78 LPWFKLTQEAIEIDREEKRVYEECRDDLRERLKRFVLMSKEKVLPLKIIKGMEWYLGLPSDF-LEHFEVNLDGSFRFVEM 156 (355)
Q Consensus 78 ~p~~rlT~~a~~L~~eE~~v~~~~e~~~v~rLrKLLMMS~~r~LpL~kl~~lr~dLGLP~DF-~~~lv~~yP~~Frvv~~ 156 (355)
..|+.+.+.-.+-+++=+++++++...+..- . .......+|+ .++ .+-++.+||++|.+...
T Consensus 9 ~~wi~iD~~Y~~~~~~R~~ll~~~~~~v~~~-------~-------p~~~~A~~El---l~~v~~~L~~ryP~~F~~~~~ 71 (249)
T PF11927_consen 9 SDWIEIDNTYAARLAERRRLLAEHPDEVLQA-------L-------PGSEAAVWEL---LELVLDYLPARYPQYFSLDGD 71 (249)
T ss_pred HHhccccHHHHHHHHHHHHHHHHCcchhhcc-------C-------ccHHHHHHHH---HHHHHHHHHHhCchheEEcCC
Confidence 4588888888888888888888866555433 1 1122222332 122 23488899999999654
Q ss_pred CCC-------CccEEEeecCCCccccHHHHHHH--HcCcc--cCC-CCcc---cccccCCCCCcccchhHHHHHHhhc
Q 038868 157 EDG-------LKGLAVENIGEEKVLSVLQRNAM--KRGLY--VGE-PMEP---IEFPFFPQKGLRLKRKIDHWFNEFQ 219 (355)
Q Consensus 157 ~~~-------~~~LeLv~wd~elAvs~~E~~~~--~~~~~--~~~-~~~~---~~Fp~~fp~G~~l~k~~~~~l~~fQ 219 (355)
.++ +....+. +.+.+...+++.-+. .+..+ ... ..+. -+.-+.||.|+.+..|+..-|.+.+
T Consensus 72 ~~~~~~n~~~ge~~~~~-~~~~~~~~pL~~~~~~vqEDl~il~~~~~~~~~~L~A~~~cfP~~W~l~~K~G~~l~~IH 148 (249)
T PF11927_consen 72 GDRWWHNRLTGETFPLD-PPDSLPLDPLEILGRLVQEDLCILLRDEEDGEYRLRAGVVCFPAGWSLSEKIGKPLAAIH 148 (249)
T ss_pred CceeEEeccCCCEEecC-CCCCCchhHHHHHHHhChhcEEEEeecCCCCcEEEeheeeecCCCCCHHHHcCCcHHHhc
Confidence 311 1112222 111344556664431 11111 011 1111 2556788888888777655444433
Done!