Query 038868
Match_columns 355
No_of_seqs 136 out of 189
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 06:18:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038868.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038868hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m66_A Mterf3, mterf domain-co 63.9 1.7 5.7E-05 39.9 0.5 41 111-153 138-178 (270)
2 3m66_A Mterf3, mterf domain-co 52.8 1.9 6.6E-05 39.5 -1.2 90 49-153 49-142 (270)
3 3eco_A MEPR; mutlidrug efflux 51.2 37 0.0012 26.7 6.5 72 25-100 34-110 (139)
4 3g3z_A NMB1585, transcriptiona 44.8 77 0.0026 25.0 7.5 70 25-100 34-108 (145)
5 4fp9_B Mterf domain-containing 44.5 3.1 0.0001 40.3 -1.3 41 110-153 103-143 (335)
6 3nqo_A MARR-family transcripti 41.6 41 0.0014 28.5 5.7 71 25-99 44-119 (189)
7 2frh_A SARA, staphylococcal ac 41.5 1E+02 0.0035 24.2 7.7 71 26-100 41-116 (127)
8 3bro_A Transcriptional regulat 40.7 51 0.0018 25.7 5.8 71 25-99 37-112 (141)
9 4b8x_A SCO5413, possible MARR- 38.6 60 0.0021 26.3 6.0 66 26-94 39-108 (147)
10 3jw4_A Transcriptional regulat 35.6 76 0.0026 25.2 6.1 72 25-100 44-120 (148)
11 3fm5_A Transcriptional regulat 35.0 70 0.0024 25.5 5.8 70 25-99 42-116 (150)
12 4fp9_B Mterf domain-containing 34.7 15 0.0005 35.5 1.8 47 106-154 134-180 (335)
13 4fx0_A Probable transcriptiona 32.0 65 0.0022 26.3 5.2 70 26-100 37-114 (148)
14 3cdh_A Transcriptional regulat 31.4 1.9E+02 0.0066 22.8 8.0 71 26-102 47-122 (155)
15 3mva_O Transcription terminati 30.6 7.6 0.00026 36.9 -1.0 91 49-153 59-153 (343)
16 3u2r_A Regulatory protein MARR 30.3 1E+02 0.0035 25.1 6.2 72 25-100 49-125 (168)
17 3nrv_A Putative transcriptiona 24.8 1.9E+02 0.0064 22.6 6.7 68 25-98 43-115 (148)
18 3bj6_A Transcriptional regulat 23.1 2.4E+02 0.0081 22.1 7.0 67 26-98 44-115 (152)
19 2fbi_A Probable transcriptiona 22.7 1.9E+02 0.0066 22.2 6.3 69 26-100 40-113 (142)
20 3k0l_A Repressor protein; heli 22.6 1.7E+02 0.0059 23.5 6.1 69 26-100 50-123 (162)
21 3e6m_A MARR family transcripti 22.3 1.6E+02 0.0054 23.7 5.9 68 27-100 58-130 (161)
22 3e98_A GAF domain of unknown f 21.8 86 0.0029 28.8 4.5 83 55-137 34-137 (252)
23 2icg_A LIN2918 protein; hypoth 21.2 76 0.0026 26.3 3.7 44 103-147 4-54 (160)
24 2gxg_A 146AA long hypothetical 21.2 2.3E+02 0.0079 21.9 6.5 59 36-98 48-111 (146)
25 2hr3_A Probable transcriptiona 20.3 2.8E+02 0.0094 21.5 6.8 67 27-98 40-111 (147)
26 3s2w_A Transcriptional regulat 20.3 2E+02 0.0068 23.0 6.0 69 26-100 54-127 (159)
27 3f3x_A Transcriptional regulat 20.3 89 0.003 24.6 3.8 71 25-102 40-115 (144)
No 1
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=63.89 E-value=1.7 Score=39.92 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=28.7
Q ss_pred HHHhccCCCccchhhHHHhHHhcCCCcccchhhhhcCCCCeEE
Q 038868 111 RFVLMSKEKVLPLKIIKGMEWYLGLPSDFLEHFEVNLDGSFRF 153 (355)
Q Consensus 111 KLLMMS~~r~LpL~kl~~lr~dLGLP~DF~~~lv~~yP~~Frv 153 (355)
.+|.+|.++. -.++.-+..++|++++=...++.++|+.+..
T Consensus 138 ~il~~s~e~~--~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~ 178 (270)
T 3m66_A 138 RLLTGSLEPV--KENMKVYRLELGFKHNEIQHMITRIPKMLTA 178 (270)
T ss_dssp GGGTSCSHHH--HHHHHHHHHTSCCCHHHHHHHHHHCGGGGTS
T ss_pred cceeechHHH--HHHHHHHHHHcCCCHHHHHHHHHhCChhhee
Confidence 6777776542 3455556678888888777788888887755
No 2
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=52.78 E-value=1.9 Score=39.50 Aligned_cols=90 Identities=16% Similarity=0.135 Sum_probs=58.5
Q ss_pred CccCCc-hhHHHHHhhCCCceeeccCCCCCCCceeccHHHHHHHHHHHHHHHHchHHHHHHH---HHHHhccCCCccchh
Q 038868 49 LEFDIH-IKVARFLRQYPSFFEEFTGPLYSLPWFKLTQEAIEIDREEKRVYEECRDDLRERL---KRFVLMSKEKVLPLK 124 (355)
Q Consensus 49 ~~Lgl~-~~~~~FlrkyP~iF~~~~~~~~~~p~~rlT~~a~~L~~eE~~v~~~~e~~~v~rL---rKLLMMS~~r~LpL~ 124 (355)
..+|++ ..+.+.|.++|.+|..-.+ .+.|...-| . +..+ .+.+++.-+ -.+|.+|.++ --.
T Consensus 49 ~~lG~~~~~i~~il~~~P~lL~~~~e--------~l~p~v~~L-~-~~Gl---s~~~i~~~l~~~P~lL~~s~~~--l~~ 113 (270)
T 3m66_A 49 KDVGIEDNQLGAFLTKNHAIFSEDLE--------NLKTRVAYL-H-SKNF---SKADVAQMVRKAPFLLNFSVER--LDN 113 (270)
T ss_dssp HHHTCCGGGHHHHHHHCTTGGGSCHH--------HHHHHHHHH-H-HTTC---CHHHHHHHHHHSTTGGGSCHHH--HHH
T ss_pred HHcCCCHHHHHHHHHhCChhhhCCHH--------HHHHHHHHH-H-HcCC---CHHHHHHHHHhCCHHHcCCHHH--HHH
Confidence 369999 7799999999999953221 122222111 1 1111 223333333 3577777774 346
Q ss_pred hHHHhHHhcCCCcccchhhhhcCCCCeEE
Q 038868 125 IIKGMEWYLGLPSDFLEHFEVNLDGSFRF 153 (355)
Q Consensus 125 kl~~lr~dLGLP~DF~~~lv~~yP~~Frv 153 (355)
.++.++.++|+|.+=...++.++|..+..
T Consensus 114 ~v~~L~~~lG~~~~~i~~ll~~~P~il~~ 142 (270)
T 3m66_A 114 RLGFFQKELELSVKKTRDLVVRLPRLLTG 142 (270)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHSGGGGTS
T ss_pred HHHHHHHHhCCCHHHHHHHHHhCCcceee
Confidence 77888789999998888899999999765
No 3
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=51.18 E-value=37 Score=26.68 Aligned_cols=72 Identities=11% Similarity=0.087 Sum_probs=46.4
Q ss_pred HHHHHHHhcCCCCcccchhhhhcCCccCCc----hhHHHHHhhCCCceeeccCCC-CCCCceeccHHHHHHHHHHHHHHH
Q 038868 25 LALKNVIAQEPSCSIPISAISKRGLEFDIH----IKVARFLRQYPSFFEEFTGPL-YSLPWFKLTQEAIEIDREEKRVYE 99 (355)
Q Consensus 25 ~~lk~li~~~P~~~ipl~~l~k~~~~Lgl~----~~~~~FlrkyP~iF~~~~~~~-~~~p~~rlT~~a~~L~~eE~~v~~ 99 (355)
..+-..|..+|+..+++.+|++ .+|++ .+...=|.+---| +...+|. .+.-.+.||++|.+++.+-.....
T Consensus 34 ~~vL~~l~~~~~~~~t~~ela~---~l~~~~~tvs~~l~~Le~~Gli-~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~ 109 (139)
T 3eco_A 34 GHTLGYLYAHQQDGLTQNDIAK---ALQRTGPTVSNLLRNLERKKLI-YRYVDAQDTRRKNIGLTTSGIKLVEAFTSIFD 109 (139)
T ss_dssp HHHHHHHHHSTTTCEEHHHHHH---HHTCCHHHHHHHHHHHHHTTSE-EEEECCC--CCEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcCHHHHHH---HhCCCcccHHHHHHHHHHCCCE-eecCCCCCCCeeeeEECHHHHHHHHHHHHHHH
Confidence 5566677778766788888877 78887 3333334444333 3333443 366689999999999876544444
Q ss_pred H
Q 038868 100 E 100 (355)
Q Consensus 100 ~ 100 (355)
+
T Consensus 110 ~ 110 (139)
T 3eco_A 110 E 110 (139)
T ss_dssp H
T ss_pred H
Confidence 3
No 4
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=44.84 E-value=77 Score=24.97 Aligned_cols=70 Identities=16% Similarity=0.067 Sum_probs=41.8
Q ss_pred HHHHHHHhcCCCCcccchhhhhcCCccCCc----hhHHHHHhhCCCceeeccCCC-CCCCceeccHHHHHHHHHHHHHHH
Q 038868 25 LALKNVIAQEPSCSIPISAISKRGLEFDIH----IKVARFLRQYPSFFEEFTGPL-YSLPWFKLTQEAIEIDREEKRVYE 99 (355)
Q Consensus 25 ~~lk~li~~~P~~~ipl~~l~k~~~~Lgl~----~~~~~FlrkyP~iF~~~~~~~-~~~p~~rlT~~a~~L~~eE~~v~~ 99 (355)
..+-..|...|+ ++..+|++ .+|++ .++..=|.+---|=. ..+|. .+.-++.||++|.+++.+-.....
T Consensus 34 ~~iL~~l~~~~~--~t~~eLa~---~l~~~~~tvs~~l~~Le~~Glv~r-~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~ 107 (145)
T 3g3z_A 34 FAVLYTLATEGS--RTQKHIGE---KWSLPKQTVSGVCKTLAGQGLIEW-QEGEQDRRKRLLSLTETGKAYAAPLTESAQ 107 (145)
T ss_dssp HHHHHHHHHHCS--BCHHHHHH---HHTCCHHHHHHHHHHHHHTTSEEE-CCCSSCGGGSCEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC--CCHHHHHH---HHCCCHHHHHHHHHHHHHCCCEee-ccCCCCCceeeeeEChhHHHHHHHHHHHHH
Confidence 344455555553 78888876 78887 333333444433332 33333 356689999999999776544443
Q ss_pred H
Q 038868 100 E 100 (355)
Q Consensus 100 ~ 100 (355)
+
T Consensus 108 ~ 108 (145)
T 3g3z_A 108 E 108 (145)
T ss_dssp H
T ss_pred H
Confidence 3
No 5
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=44.45 E-value=3.1 Score=40.30 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=23.7
Q ss_pred HHHHhccCCCccchhhHHHhHHhcCCCcccchhhhhcCCCCeEE
Q 038868 110 KRFVLMSKEKVLPLKIIKGMEWYLGLPSDFLEHFEVNLDGSFRF 153 (355)
Q Consensus 110 rKLLMMS~~r~LpL~kl~~lr~dLGLP~DF~~~lv~~yP~~Frv 153 (355)
-.+|++|..+ | -.+|..++. +|++.+-...++.++|+.+..
T Consensus 103 P~lL~~s~e~-L-~~~l~fL~~-lGl~~~~i~~ll~~~P~lL~~ 143 (335)
T 4fp9_B 103 PQLLKLPIMQ-M-RKRSSYLQK-LGLGEGKLKRVLYCCPEIFTM 143 (335)
T ss_dssp GGGGGSCHHH-H-HHHHHHHHH-TTCTTTTHHHHHHHCGGGGTS
T ss_pred hhhccCCHHH-H-HHHHHHHHH-cCCCHHHHHHHHHhCchhhcc
Confidence 3456666543 1 245555543 777766666677777776654
No 6
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=41.55 E-value=41 Score=28.53 Aligned_cols=71 Identities=11% Similarity=-0.017 Sum_probs=46.4
Q ss_pred HHHHHHHhcCCCCcccchhhhhcCCccCCc----hhHHHHHhhCCCceeeccCCC-CCCCceeccHHHHHHHHHHHHHHH
Q 038868 25 LALKNVIAQEPSCSIPISAISKRGLEFDIH----IKVARFLRQYPSFFEEFTGPL-YSLPWFKLTQEAIEIDREEKRVYE 99 (355)
Q Consensus 25 ~~lk~li~~~P~~~ipl~~l~k~~~~Lgl~----~~~~~FlrkyP~iF~~~~~~~-~~~p~~rlT~~a~~L~~eE~~v~~ 99 (355)
..+-..|...|++.+++++|++ .+|++ .+++.=|.+---|=.. .+|. .+.-.+.||++|.+++.+-.....
T Consensus 44 ~~vL~~L~~~~~~~~t~~eLa~---~l~is~~tvs~~l~~Le~~GlV~r~-~~~~DrR~~~l~LT~~G~~~~~~~~~~~~ 119 (189)
T 3nqo_A 44 YMTILSILHLPEEETTLNNIAR---KMGTSKQNINRLVANLEKNGYVDVI-PSPHDKRAINVKVTDLGKKVMVTCSRTGI 119 (189)
T ss_dssp HHHHHHHHHSCGGGCCHHHHHH---HHTSCHHHHHHHHHHHHHTTSEEEE-ECSSCSSCEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCcCHHHHHH---HHCCCHHHHHHHHHHHHHCCCEEec-cCCCCCCeeEEEECHHHHHHHHHHHHHHH
Confidence 3445566666777889999977 78887 3344444455444443 3333 366789999999998876544443
No 7
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=41.53 E-value=1e+02 Score=24.22 Aligned_cols=71 Identities=10% Similarity=0.048 Sum_probs=44.7
Q ss_pred HHHHHHhcCCCCcccchhhhhcCCccCCc----hhHHHHHhhCCCceeeccCCC-CCCCceeccHHHHHHHHHHHHHHHH
Q 038868 26 ALKNVIAQEPSCSIPISAISKRGLEFDIH----IKVARFLRQYPSFFEEFTGPL-YSLPWFKLTQEAIEIDREEKRVYEE 100 (355)
Q Consensus 26 ~lk~li~~~P~~~ipl~~l~k~~~~Lgl~----~~~~~FlrkyP~iF~~~~~~~-~~~p~~rlT~~a~~L~~eE~~v~~~ 100 (355)
.+-..|..++++.++.++|++ .+|++ .++..=|.+---|=.. .+|. .+.-.+.||++|.+++.+-.....+
T Consensus 41 ~vL~~l~~~~~~~~t~~eLa~---~l~~~~~tvs~~l~~Le~~Glv~r~-~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~ 116 (127)
T 2frh_A 41 AVLTYISENKEKEYYLKDIIN---HLNYKQPQVVKAVKILSQEDYFDKK-RNEHDERTVLILVNAQQRKKIESLLSRVNK 116 (127)
T ss_dssp HHHHHHHHTCCSEEEHHHHHH---HSSSHHHHHHHHHHHHHHTTSSCCB-CCSSSSCCCEEECCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCcCHHHHHH---HHCCCHHHHHHHHHHHHHCCCEEec-CCCCCCCeeEEEECHHHHHHHHHHHHHHHH
Confidence 344555566556788888877 78887 3333334444444332 2333 3667899999999998876555544
No 8
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=40.69 E-value=51 Score=25.71 Aligned_cols=71 Identities=10% Similarity=0.140 Sum_probs=45.3
Q ss_pred HHHHHHHhcCCCCcccchhhhhcCCccCCc----hhHHHHHhhCCCceeeccCCC-CCCCceeccHHHHHHHHHHHHHHH
Q 038868 25 LALKNVIAQEPSCSIPISAISKRGLEFDIH----IKVARFLRQYPSFFEEFTGPL-YSLPWFKLTQEAIEIDREEKRVYE 99 (355)
Q Consensus 25 ~~lk~li~~~P~~~ipl~~l~k~~~~Lgl~----~~~~~FlrkyP~iF~~~~~~~-~~~p~~rlT~~a~~L~~eE~~v~~ 99 (355)
..+-..|...|++.++..+|.+ .+|++ .++..=|.+---|- ...+|. .+.-.+.||+++.++..+=.....
T Consensus 37 ~~iL~~l~~~~~~~~~~~ela~---~l~~~~~tvs~~l~~Le~~Gli~-r~~~~~d~R~~~i~lT~~G~~~~~~~~~~~~ 112 (141)
T 3bro_A 37 MTIIDYLSRNKNKEVLQRDLES---EFSIKSSTATVLLQRMEIKKLLY-RKVSGKDSRQKCLKLTKKANKLETIILSYMD 112 (141)
T ss_dssp HHHHHHHHHTTTSCCBHHHHHH---HHTCCHHHHHHHHHHHHHTTSEE-EEECSSCTTSEEEEECHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCcCHHHHHH---HHCCCcchHHHHHHHHHHCCCEE-eeCCCcCCCeeeeEECHHHHHHHHHHHHHHH
Confidence 4455667777766788888877 78887 33444444443333 333443 355689999999998876544443
No 9
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=38.62 E-value=60 Score=26.33 Aligned_cols=66 Identities=12% Similarity=0.045 Sum_probs=43.0
Q ss_pred HHHHHHhcCCCCcccchhhhhcCCccCCc----hhHHHHHhhCCCceeeccCCCCCCCceeccHHHHHHHHHH
Q 038868 26 ALKNVIAQEPSCSIPISAISKRGLEFDIH----IKVARFLRQYPSFFEEFTGPLYSLPWFKLTQEAIEIDREE 94 (355)
Q Consensus 26 ~lk~li~~~P~~~ipl~~l~k~~~~Lgl~----~~~~~FlrkyP~iF~~~~~~~~~~p~~rlT~~a~~L~~eE 94 (355)
.+-.+|...|++.++.++|++ .+|++ .++..=|.+---|=..-.....+.-++.||++|.+++.+=
T Consensus 39 ~vL~~L~~~~~~~~t~~eLa~---~l~~~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~ 108 (147)
T 4b8x_A 39 EALVLLTFSKSGELPMSKIGE---RLMVHPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVVEAA 108 (147)
T ss_dssp HHHHHHHTSGGGEEEHHHHHH---HHTCCHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCcCHHHHHH---HHCCCHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHHHHH
Confidence 344566667778888888877 78887 4455555555555444332234677999999999987653
No 10
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=35.56 E-value=76 Score=25.18 Aligned_cols=72 Identities=8% Similarity=-0.013 Sum_probs=38.7
Q ss_pred HHHHHHHhcCCCCcccchhhhhcCCccCCc----hhHHHHHhhCCCceeeccCC-CCCCCceeccHHHHHHHHHHHHHHH
Q 038868 25 LALKNVIAQEPSCSIPISAISKRGLEFDIH----IKVARFLRQYPSFFEEFTGP-LYSLPWFKLTQEAIEIDREEKRVYE 99 (355)
Q Consensus 25 ~~lk~li~~~P~~~ipl~~l~k~~~~Lgl~----~~~~~FlrkyP~iF~~~~~~-~~~~p~~rlT~~a~~L~~eE~~v~~ 99 (355)
..+-..|..+|++.++..+|++ .+|++ .++..=|.+---|=.. .+| ..+.-.+.||++|.++..+-.....
T Consensus 44 ~~vL~~l~~~~~~~~t~~eLa~---~l~~~~~~vs~~l~~L~~~Glv~r~-~~~~DrR~~~~~LT~~G~~~~~~~~~~~~ 119 (148)
T 3jw4_A 44 GRMIGYIYENQESGIIQKDLAQ---FFGRRGASITSMLQGLEKKGYIERR-IPENNARQKNIYVLPKGAALVEEFNNIFL 119 (148)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHH---C------CHHHHHHHHHHTTSBCCC---------CCCCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHH---HHCCChhHHHHHHHHHHHCCCEEee-CCCCCchhheeeECHHHHHHHHHHHHHHH
Confidence 3455566666656788888877 67887 3334444444333332 233 2356689999999999876555544
Q ss_pred H
Q 038868 100 E 100 (355)
Q Consensus 100 ~ 100 (355)
+
T Consensus 120 ~ 120 (148)
T 3jw4_A 120 E 120 (148)
T ss_dssp H
T ss_pred H
Confidence 3
No 11
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=35.00 E-value=70 Score=25.47 Aligned_cols=70 Identities=7% Similarity=0.068 Sum_probs=36.6
Q ss_pred HHHHHHHhcCCCCcccchhhhhcCCccCCc-h---hHHHHHhhCCCceeeccCCC-CCCCceeccHHHHHHHHHHHHHHH
Q 038868 25 LALKNVIAQEPSCSIPISAISKRGLEFDIH-I---KVARFLRQYPSFFEEFTGPL-YSLPWFKLTQEAIEIDREEKRVYE 99 (355)
Q Consensus 25 ~~lk~li~~~P~~~ipl~~l~k~~~~Lgl~-~---~~~~FlrkyP~iF~~~~~~~-~~~p~~rlT~~a~~L~~eE~~v~~ 99 (355)
..+-..|...|+. ++..+|++ .+|++ - ++..=|.+---| +-..+|. .+.-++.||++|.+++.+=.....
T Consensus 42 ~~vL~~l~~~~~~-~t~~eLa~---~l~i~~~tvs~~l~~Le~~Glv-~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~ 116 (150)
T 3fm5_A 42 YSVLVLACEQAEG-VNQRGVAA---TMGLDPSQIVGLVDELEERGLV-VRTLDPSDRRNKLIAATEEGRRLRDDAKARVD 116 (150)
T ss_dssp HHHHHHHHHSTTC-CCSHHHHH---HHTCCHHHHHHHHHHHHTTTSE-EC-----------CEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCC-cCHHHHHH---HHCCCHhHHHHHHHHHHHCCCE-EeeCCccccchheeeECHHHHHHHHHHHHHHH
Confidence 3344455555543 78888876 78887 2 333334443333 2233333 356689999999999876444443
No 12
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=34.66 E-value=15 Score=35.51 Aligned_cols=47 Identities=4% Similarity=-0.124 Sum_probs=32.2
Q ss_pred HHHHHHHHhccCCCccchhhHHHhHHhcCCCcccchhhhhcCCCCeEEE
Q 038868 106 RERLKRFVLMSKEKVLPLKIIKGMEWYLGLPSDFLEHFEVNLDGSFRFV 154 (355)
Q Consensus 106 v~rLrKLLMMS~~r~LpL~kl~~lr~dLGLP~DF~~~lv~~yP~~Frvv 154 (355)
+.+.-.+|.+|..+ -...+..++..+|+..+=...++.++|..+...
T Consensus 134 l~~~P~lL~~s~e~--i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S 180 (335)
T 4fp9_B 134 LYCCPEIFTMRQQD--INDTVRLLKEKCLFTVQQVTKILHSCPSVLRED 180 (335)
T ss_dssp HHHCGGGGTSCHHH--HHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC
T ss_pred HHhCchhhccChHH--HHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCC
Confidence 33444456555543 224556677889999987778999999988763
No 13
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=32.04 E-value=65 Score=26.28 Aligned_cols=70 Identities=9% Similarity=0.097 Sum_probs=36.1
Q ss_pred HHHHHHhcCCC---CcccchhhhhcCCccCCc----hhHHHHHhhCCCceeeccCCC-CCCCceeccHHHHHHHHHHHHH
Q 038868 26 ALKNVIAQEPS---CSIPISAISKRGLEFDIH----IKVARFLRQYPSFFEEFTGPL-YSLPWFKLTQEAIEIDREEKRV 97 (355)
Q Consensus 26 ~lk~li~~~P~---~~ipl~~l~k~~~~Lgl~----~~~~~FlrkyP~iF~~~~~~~-~~~p~~rlT~~a~~L~~eE~~v 97 (355)
.+-..|...|+ +.++..+|++ .+|++ .++..=|.+---| .. .+|. .+.-.+.||++|.+++.+=..+
T Consensus 37 ~vL~~l~~~~~~~~~~~t~~eLa~---~l~~~~~tvsr~v~~Le~~glV-r~-~~~~DrR~~~v~LT~~G~~~~~~~~~~ 111 (148)
T 4fx0_A 37 STLAVISLSEGSAGIDLTMSELAA---RIGVERTTLTRNLEVMRRDGLV-RV-MAGADARCKRIELTAKGRAALQKAVPL 111 (148)
T ss_dssp HHHHHHHC---------CHHHHHH---HHTCCHHHHHHHHHHHHHTTSB-C------------CCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCcCHHHHHH---HHCCChhhHHHHHHHHHHCCCE-Ee-eCCCCCCeeEEEECHHHHHHHHHHHHH
Confidence 44455666554 4688888877 78887 3344445555455 54 3343 3667899999999998765444
Q ss_pred HHH
Q 038868 98 YEE 100 (355)
Q Consensus 98 ~~~ 100 (355)
..+
T Consensus 112 ~~~ 114 (148)
T 4fx0_A 112 WRG 114 (148)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 14
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=31.41 E-value=1.9e+02 Score=22.81 Aligned_cols=71 Identities=6% Similarity=0.027 Sum_probs=40.7
Q ss_pred HHHHHHhcCCCCcccchhhhhcCCccCCc----hhHHHHHhhCCCceeeccCCC-CCCCceeccHHHHHHHHHHHHHHHH
Q 038868 26 ALKNVIAQEPSCSIPISAISKRGLEFDIH----IKVARFLRQYPSFFEEFTGPL-YSLPWFKLTQEAIEIDREEKRVYEE 100 (355)
Q Consensus 26 ~lk~li~~~P~~~ipl~~l~k~~~~Lgl~----~~~~~FlrkyP~iF~~~~~~~-~~~p~~rlT~~a~~L~~eE~~v~~~ 100 (355)
.+-..|..++ .++..+|++ .+|++ .+++.=|.+---| +...++. .+.-++.||++|.+++.+-......
T Consensus 47 ~iL~~l~~~~--~~t~~ela~---~l~i~~~tvs~~l~~Le~~Glv-~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~ 120 (155)
T 3cdh_A 47 RVLACLVDND--AMMITRLAK---LSLMEQSRMTRIVDQMDARGLV-TRVADAKDKRRVRVRLTDDGRALAESLVASARA 120 (155)
T ss_dssp HHHHHHSSCS--CBCHHHHHH---HTTCCHHHHHHHHHHHHHTTSE-EECC------CCCEEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC--CcCHHHHHH---HHCCCHHHHHHHHHHHHHCCCE-EeccCCCcCCeeEeEECHHHHHHHHHHHHHHHH
Confidence 3444555443 478888876 78887 3344444444333 3333333 3566899999999998775555544
Q ss_pred ch
Q 038868 101 CR 102 (355)
Q Consensus 101 ~e 102 (355)
..
T Consensus 121 ~~ 122 (155)
T 3cdh_A 121 HE 122 (155)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 15
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=30.64 E-value=7.6 Score=36.94 Aligned_cols=91 Identities=18% Similarity=0.127 Sum_probs=55.5
Q ss_pred CccCCc-hhHHHHHhhCCCceeeccCCCCCCCceeccHHHHHHHHHHHHHHHHchHHHH---HHHHHHHhccCCCccchh
Q 038868 49 LEFDIH-IKVARFLRQYPSFFEEFTGPLYSLPWFKLTQEAIEIDREEKRVYEECRDDLR---ERLKRFVLMSKEKVLPLK 124 (355)
Q Consensus 49 ~~Lgl~-~~~~~FlrkyP~iF~~~~~~~~~~p~~rlT~~a~~L~~eE~~v~~~~e~~~v---~rLrKLLMMS~~r~LpL~ 124 (355)
+.+|++ ..+.+.+.+||.++... +. .+.|...-|. .. .-...+++ .+--.+|+-|.+..--..
T Consensus 59 ~~~G~s~~~i~~iv~~~P~lL~~~--~~------~l~p~l~fL~--~l---G~s~~~i~~il~~~P~iLl~s~~~~~l~p 125 (343)
T 3mva_O 59 LSKGASKEVIASIISRYPRAITRT--PE------NLSKRWDLWR--KI---VTSDLEIVNILERSPESFFRSNNNLNLEN 125 (343)
T ss_dssp HHTTCCHHHHHHHHHHCGGGGGCC--HH------HHHHHHHHHT--TT---SSCHHHHHHHHHHCSHHHHSCCCHHHHHH
T ss_pred HHcCCCHHHHHHHHHhCcHHHhCC--HH------HHHHHHHHHH--Hc---CCCHHHHHHHHHHCCHHHhCCChHhhHHH
Confidence 389999 77999999999998422 11 1222221110 00 01223333 233334555555323334
Q ss_pred hHHHhHHhcCCCcccchhhhhcCCCCeEE
Q 038868 125 IIKGMEWYLGLPSDFLEHFEVNLDGSFRF 153 (355)
Q Consensus 125 kl~~lr~dLGLP~DF~~~lv~~yP~~Frv 153 (355)
.++.++ ++|+|.+-...++.++|..|..
T Consensus 126 ~v~fL~-~lGl~~~~i~~ll~~~P~il~~ 153 (343)
T 3mva_O 126 NIKFLY-SVGLTRKCLCRLLTNAPRTFSN 153 (343)
T ss_dssp HHHHHH-HTTCCHHHHHHHHHHCGGGGTS
T ss_pred HHHHHH-HhCCCHHHHHHHHHhCChhhee
Confidence 677777 8999999999999999999865
No 16
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=30.33 E-value=1e+02 Score=25.10 Aligned_cols=72 Identities=7% Similarity=0.051 Sum_probs=41.8
Q ss_pred HHHHHHHhcCCCCcccchhhhhcCCccCCc----hhHHHHHhhCCCceeeccCCC-CCCCceeccHHHHHHHHHHHHHHH
Q 038868 25 LALKNVIAQEPSCSIPISAISKRGLEFDIH----IKVARFLRQYPSFFEEFTGPL-YSLPWFKLTQEAIEIDREEKRVYE 99 (355)
Q Consensus 25 ~~lk~li~~~P~~~ipl~~l~k~~~~Lgl~----~~~~~FlrkyP~iF~~~~~~~-~~~p~~rlT~~a~~L~~eE~~v~~ 99 (355)
..+-..|..+++..+++.+|++ .+|++ .+++.=|.+---|-.. .+|. .+.-.+.||++|.+++.+=.....
T Consensus 49 ~~vL~~l~~~~~~~~t~~eLa~---~l~~~~~tvs~~l~~Le~~Glv~r~-~~~~DrR~~~l~LT~~G~~~~~~~~~~~~ 124 (168)
T 3u2r_A 49 YNTLRLLRSVHPEGMATLQIAD---RLISRAPDITRLIDRLDDRGLVLRT-RKPENRRVVEVALTDAGLKLLKDLEEPVR 124 (168)
T ss_dssp HHHHHHHHHHTTSCEEHHHHHH---HC---CTHHHHHHHHHHHTTSEEEE-EETTEEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcCHHHHHH---HHCCChhhHHHHHHHHHHCCCEeec-CCCCCCCeeEeEECHHHHHHHHHHHHHHH
Confidence 3444556655445678888877 67887 3344445554444433 3333 355689999999999876555444
Q ss_pred H
Q 038868 100 E 100 (355)
Q Consensus 100 ~ 100 (355)
+
T Consensus 125 ~ 125 (168)
T 3u2r_A 125 Q 125 (168)
T ss_dssp H
T ss_pred H
Confidence 3
No 17
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=24.85 E-value=1.9e+02 Score=22.62 Aligned_cols=68 Identities=12% Similarity=0.100 Sum_probs=38.5
Q ss_pred HHHHHHHhcCCCCcccchhhhhcCCccCCc----hhHHHHHhhCCCceeeccCCCC-CCCceeccHHHHHHHHHHHHHH
Q 038868 25 LALKNVIAQEPSCSIPISAISKRGLEFDIH----IKVARFLRQYPSFFEEFTGPLY-SLPWFKLTQEAIEIDREEKRVY 98 (355)
Q Consensus 25 ~~lk~li~~~P~~~ipl~~l~k~~~~Lgl~----~~~~~FlrkyP~iF~~~~~~~~-~~p~~rlT~~a~~L~~eE~~v~ 98 (355)
..+-..|...+ .++..+|++ .+|++ .+...-|.+- ++.+...+|.. +.-++.||++|.++..+-....
T Consensus 43 ~~iL~~l~~~~--~~t~~ela~---~l~~~~~tvs~~l~~Le~~-Glv~r~~~~~D~R~~~~~lT~~G~~~~~~~~~~~ 115 (148)
T 3nrv_A 43 WRIISVLSSAS--DCSVQKISD---ILGLDKAAVSRTVKKLEEK-KYIEVNGHSEDKRTYAINLTEMGQELYEVASDFA 115 (148)
T ss_dssp HHHHHHHHHSS--SBCHHHHHH---HHTCCHHHHHHHHHHHHHT-TSEEC---------CCBEECHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCC--CCCHHHHHH---HHCCCHHHHHHHHHHHHHC-CCEEeecCCCCcceeEeEECHhHHHHHHHHHHHH
Confidence 34455555554 677777876 78887 3333444444 44444444433 5668999999999987644443
No 18
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=23.14 E-value=2.4e+02 Score=22.05 Aligned_cols=67 Identities=10% Similarity=0.069 Sum_probs=39.9
Q ss_pred HHHHHHhcCCCCcccchhhhhcCCccCCc----hhHHHHHhhCCCceeeccCC-CCCCCceeccHHHHHHHHHHHHHH
Q 038868 26 ALKNVIAQEPSCSIPISAISKRGLEFDIH----IKVARFLRQYPSFFEEFTGP-LYSLPWFKLTQEAIEIDREEKRVY 98 (355)
Q Consensus 26 ~lk~li~~~P~~~ipl~~l~k~~~~Lgl~----~~~~~FlrkyP~iF~~~~~~-~~~~p~~rlT~~a~~L~~eE~~v~ 98 (355)
.+-..|...+ .++..+|++ .+|++ .++..=|.+---|=. ..+| ..+.-++.||+++.+++.+-....
T Consensus 44 ~iL~~l~~~~--~~t~~ela~---~l~~~~~~vs~~l~~Le~~Glv~r-~~~~~d~R~~~~~lT~~G~~~~~~~~~~~ 115 (152)
T 3bj6_A 44 AILEGLSLTP--GATAPQLGA---ALQMKRQYISRILQEVQRAGLIER-RTNPEHARSHRYWLTPRGEAIITAIRADE 115 (152)
T ss_dssp HHHHHHHHST--TEEHHHHHH---HHTCCHHHHHHHHHHHHHTTSEEE-ECCSSSTTSCEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC--CCCHHHHHH---HHCCCHHHHHHHHHHHHHCCCeee-cCCcccccceeeEEChhhHHHHHHHHHHH
Confidence 3444555544 477788876 78887 333344444433333 3333 336668999999999877544443
No 19
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=22.66 E-value=1.9e+02 Score=22.18 Aligned_cols=69 Identities=12% Similarity=0.062 Sum_probs=39.9
Q ss_pred HHHHHHhcCCCCcccchhhhhcCCccCCc----hhHHHHHhhCCCceeeccCCC-CCCCceeccHHHHHHHHHHHHHHHH
Q 038868 26 ALKNVIAQEPSCSIPISAISKRGLEFDIH----IKVARFLRQYPSFFEEFTGPL-YSLPWFKLTQEAIEIDREEKRVYEE 100 (355)
Q Consensus 26 ~lk~li~~~P~~~ipl~~l~k~~~~Lgl~----~~~~~FlrkyP~iF~~~~~~~-~~~p~~rlT~~a~~L~~eE~~v~~~ 100 (355)
.+-..|...+ .++..+|++ .+|++ .++..-|.+---|- ...+|. .+.-++.||++|.+++.+-......
T Consensus 40 ~iL~~l~~~~--~~t~~ela~---~l~~s~~~vs~~l~~Le~~glv~-r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~ 113 (142)
T 2fbi_A 40 RVIRILRQQG--EMESYQLAN---QACILRPSMTGVLARLERDGIVR-RWKAPKDQRRVYVNLTEKGQQCFVSMSGDMEK 113 (142)
T ss_dssp HHHHHHHHHC--SEEHHHHHH---HTTCCHHHHHHHHHHHHHTTSEE-EEEETTEEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--CCCHHHHHH---HHCCCHhHHHHHHHHHHHCCCEE-eecCCCCCCeeEEEECHHHHHHHHHHHHHHHH
Confidence 3444444443 378888876 78887 33344444443333 233332 2455799999999998754444433
No 20
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=22.57 E-value=1.7e+02 Score=23.50 Aligned_cols=69 Identities=13% Similarity=0.105 Sum_probs=42.2
Q ss_pred HHHHHHhcCCCCcccchhhhhcCCccCCc----hhHHHHHhhCCCceeeccCCC-CCCCceeccHHHHHHHHHHHHHHHH
Q 038868 26 ALKNVIAQEPSCSIPISAISKRGLEFDIH----IKVARFLRQYPSFFEEFTGPL-YSLPWFKLTQEAIEIDREEKRVYEE 100 (355)
Q Consensus 26 ~lk~li~~~P~~~ipl~~l~k~~~~Lgl~----~~~~~FlrkyP~iF~~~~~~~-~~~p~~rlT~~a~~L~~eE~~v~~~ 100 (355)
.+-..|...+ .+++.+|.+ .+|++ .+++.=|.+---|=.. .+|. .+.-++.||++|.+++.+-.....+
T Consensus 50 ~iL~~l~~~~--~~t~~eLa~---~l~~~~~tvs~~l~~Le~~Glv~r~-~~~~DrR~~~l~LT~~G~~~~~~~~~~~~~ 123 (162)
T 3k0l_A 50 TALSVLAAKP--NLSNAKLAE---RSFIKPQSANKILQDLLANGWIEKA-PDPTHGRRILVTVTPSGLDKLNQCNQVVQQ 123 (162)
T ss_dssp HHHHHHHHCT--TCCHHHHHH---HHTSCGGGHHHHHHHHHHTTSEEEE-ECCSSSCCEEEEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC--CCCHHHHHH---HHCCCHHHHHHHHHHHHHCcCeEec-CCCCcCCeeEeEECHhHHHHHHHHHHHHHH
Confidence 3444555554 477788866 77887 3344444444444433 3343 3667899999999998765554433
No 21
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=22.29 E-value=1.6e+02 Score=23.69 Aligned_cols=68 Identities=7% Similarity=-0.051 Sum_probs=40.2
Q ss_pred HHHHHhcCCCCcccchhhhhcCCccCCc----hhHHHHHhhCCCceeeccCCC-CCCCceeccHHHHHHHHHHHHHHHH
Q 038868 27 LKNVIAQEPSCSIPISAISKRGLEFDIH----IKVARFLRQYPSFFEEFTGPL-YSLPWFKLTQEAIEIDREEKRVYEE 100 (355)
Q Consensus 27 lk~li~~~P~~~ipl~~l~k~~~~Lgl~----~~~~~FlrkyP~iF~~~~~~~-~~~p~~rlT~~a~~L~~eE~~v~~~ 100 (355)
+-..|...+ .++..+|++ .+|++ .+++.=|.+---|-.. .+|. .+.-++.||++|.+++.+-.....+
T Consensus 58 vL~~l~~~~--~~t~~eLa~---~l~~~~~~vs~~l~~Le~~Glv~r~-~~~~DrR~~~~~LT~~G~~~~~~~~~~~~~ 130 (161)
T 3e6m_A 58 LLSSLSAYG--ELTVGQLAT---LGVMEQSTTSRTVDQLVDEGLAARS-ISDADQRKRTVVLTRKGKKKLAEISPLIND 130 (161)
T ss_dssp HHHHHHHHS--EEEHHHHHH---HTTCCHHHHHHHHHHHHHTTSEEEC-C---CCCSCEEEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCC--CCCHHHHHH---HHCCCHHHHHHHHHHHHHCCCEEee-CCcccCCeeEeeECHHHHHHHHHHHHHHHH
Confidence 344444443 577788876 78887 3334444444444332 3333 3667999999999998765544433
No 22
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=21.84 E-value=86 Score=28.75 Aligned_cols=83 Identities=20% Similarity=0.275 Sum_probs=28.9
Q ss_pred hhHHHHHhhCCCceeeccC-------CCCCCCceeccHHHHHHHHHHHHHHHHch----------HHHHHHHHHH---Hh
Q 038868 55 IKVARFLRQYPSFFEEFTG-------PLYSLPWFKLTQEAIEIDREEKRVYEECR----------DDLRERLKRF---VL 114 (355)
Q Consensus 55 ~~~~~FlrkyP~iF~~~~~-------~~~~~p~~rlT~~a~~L~~eE~~v~~~~e----------~~~v~rLrKL---LM 114 (355)
..|.+||+.+|..|..+.. |...---+.|.+...+..+++-.-+++.- ..+..++.++ |+
T Consensus 34 ~~V~~yL~~~PdFf~~~~~Ll~~L~lph~~~~aVSL~erQ~~~LR~r~~~Le~~L~~Li~~A~~Ne~l~~~~~~l~l~LL 113 (252)
T 3e98_A 34 EQVAAYLSQHPEFFVEHDELIPELRIPHQPGDAVSLVERQVRLLRERNIEMRHRLSQLMDVARENDRLFDKTRRLVLDLL 113 (252)
T ss_dssp ---------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHhhCHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4579999999999987643 11111357788887777776544443311 1122333332 33
Q ss_pred ccCCCccchhhH-HHhHHhcCCCc
Q 038868 115 MSKEKVLPLKII-KGMEWYLGLPS 137 (355)
Q Consensus 115 MS~~r~LpL~kl-~~lr~dLGLP~ 137 (355)
-+.+-.=-+..| ..++.+||+|.
T Consensus 114 ~a~sl~~l~~~L~~~l~~~F~l~~ 137 (252)
T 3e98_A 114 DATSLEDVVSTVEDSLRHEFQVPY 137 (252)
T ss_dssp HCCSHHHHHHHHHHHHHHTSCCSE
T ss_pred cCCCHHHHHHHHHHHHHHHCCCCe
Confidence 333332223333 66777888875
No 23
>2icg_A LIN2918 protein; hypothetical protein, structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 1.65A {Listeria innocua} SCOP: d.369.1.1
Probab=21.19 E-value=76 Score=26.32 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhcc-----CCCccchhhHHHhHHhcC--CCcccchhhhhcC
Q 038868 103 DDLRERLKRFVLMS-----KEKVLPLKIIKGMEWYLG--LPSDFLEHFEVNL 147 (355)
Q Consensus 103 ~~~v~rLrKLLMMS-----~~r~LpL~kl~~lr~dLG--LP~DF~~~lv~~y 147 (355)
....+++++++|.. ....+.-..|..+...|| ||+||+. ++.+|
T Consensus 4 ~~~~~~i~~~i~~~~~~~~~~~~~s~~~I~~~E~~Lgi~lP~~Yk~-fL~~~ 54 (160)
T 2icg_A 4 SSFLEEVDRLITLSGITFHASGTGTPELIKIYQDALGNEFPETYKL-FLEKY 54 (160)
T ss_dssp HHHHHHHHHHHHHCCSCCBCCCCCCHHHHHHHHHHHTCCCCHHHHH-HHHHT
T ss_pred hHHHHHHHHHHHHcccccccCCCCCHHHHHHHHHHhCCCCCHHHHH-HHHHh
Confidence 35677888888742 345667788999998887 6999999 66665
No 24
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=21.16 E-value=2.3e+02 Score=21.87 Aligned_cols=59 Identities=7% Similarity=0.111 Sum_probs=37.4
Q ss_pred CCcccchhhhhcCCccCCc----hhHHHHHhhCCCceeeccCCC-CCCCceeccHHHHHHHHHHHHHH
Q 038868 36 SCSIPISAISKRGLEFDIH----IKVARFLRQYPSFFEEFTGPL-YSLPWFKLTQEAIEIDREEKRVY 98 (355)
Q Consensus 36 ~~~ipl~~l~k~~~~Lgl~----~~~~~FlrkyP~iF~~~~~~~-~~~p~~rlT~~a~~L~~eE~~v~ 98 (355)
++.++..+|++ .+|++ .++..=|.+- ++-+...+|. .+.-++.||++|.+++.+-....
T Consensus 48 ~~~~~~~ela~---~l~~s~~tvs~~l~~Le~~-glv~r~~~~~d~r~~~~~lT~~G~~~~~~~~~~~ 111 (146)
T 2gxg_A 48 DGPKTMAYLAN---RYFVTQSAITASVDKLEEM-GLVVRVRDREDRRKILIEITEKGLETFNKGIEIY 111 (146)
T ss_dssp TSCBCHHHHHH---HTTCCHHHHHHHHHHHHHT-TSEEEEECSSCTTCEEEEECHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHH---HhCCCchhHHHHHHHHHHC-CCEEeecCCCCCceEEEEECHHHHHHHHHHHHHH
Confidence 45678888877 78887 3344444444 4444444443 35567999999999887644443
No 25
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=20.30 E-value=2.8e+02 Score=21.50 Aligned_cols=67 Identities=10% Similarity=0.009 Sum_probs=37.5
Q ss_pred HHHHHhcCCCCcccchhhhhcCCccCCc----hhHHHHHhhCCCceeeccCCC-CCCCceeccHHHHHHHHHHHHHH
Q 038868 27 LKNVIAQEPSCSIPISAISKRGLEFDIH----IKVARFLRQYPSFFEEFTGPL-YSLPWFKLTQEAIEIDREEKRVY 98 (355)
Q Consensus 27 lk~li~~~P~~~ipl~~l~k~~~~Lgl~----~~~~~FlrkyP~iF~~~~~~~-~~~p~~rlT~~a~~L~~eE~~v~ 98 (355)
+-..|... ++.++..+|++ .+|++ .+++.=|.+---| +...+|. .+.-++.||++|.+++.+=....
T Consensus 40 iL~~l~~~-~~~~~~~~la~---~l~i~~~~vs~~l~~Le~~glv-~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~ 111 (147)
T 2hr3_A 40 VLGAIDRL-GGDVTPSELAA---AERMRSSNLAALLRELERGGLI-VRHADPQDGRRTRVSLSSEGRRNLYGNRAKR 111 (147)
T ss_dssp HHHHHHHT-TSCBCHHHHHH---HTTCCHHHHHHHHHHHHHTTSE-EEEC------CCEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCCCCHHHHHH---HhCCChhhHHHHHHHHHHCCCE-eeCCCCCCCCceeeEECHHHHHHHHHHHHHH
Confidence 33444441 33578888877 78887 3344444444333 3333433 35668999999999876544433
No 26
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=20.30 E-value=2e+02 Score=22.97 Aligned_cols=69 Identities=14% Similarity=0.131 Sum_probs=40.3
Q ss_pred HHHHHHhcCCCCcccchhhhhcCCccCCc----hhHHHHHhhCCCceeeccCCC-CCCCceeccHHHHHHHHHHHHHHHH
Q 038868 26 ALKNVIAQEPSCSIPISAISKRGLEFDIH----IKVARFLRQYPSFFEEFTGPL-YSLPWFKLTQEAIEIDREEKRVYEE 100 (355)
Q Consensus 26 ~lk~li~~~P~~~ipl~~l~k~~~~Lgl~----~~~~~FlrkyP~iF~~~~~~~-~~~p~~rlT~~a~~L~~eE~~v~~~ 100 (355)
.+-..|..+ ..++..+|++ .+|++ .++..=|.+---|-.. .+|. .+.-++.||++|.+++.+=.....+
T Consensus 54 ~vL~~l~~~--~~~t~~eLa~---~l~~~~~tvs~~l~~Le~~Glv~r~-~~~~DrR~~~l~LT~~G~~~~~~~~~~~~~ 127 (159)
T 3s2w_A 54 PFLMRLYRE--DGINQESLSD---YLKIDKGTTARAIQKLVDEGYVFRQ-RDEKDRRSYRVFLTEKGKKLEPDMKKIASE 127 (159)
T ss_dssp HHHHHHHHS--CSEEHHHHHH---HHTCCHHHHHHHHHHHHHTTSEEEE-ECC---CCEEEEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC--CCCCHHHHHH---HHCCCHHHHHHHHHHHHHCCCEEEe-cCCCCCCeeEEEECHHHHHHHHHHHHHHHH
Confidence 344444444 3467777766 77887 3344444454444433 3333 3566899999999998765444433
No 27
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=20.28 E-value=89 Score=24.55 Aligned_cols=71 Identities=8% Similarity=0.156 Sum_probs=44.2
Q ss_pred HHHHHHHhcCCCCcccchhhhhcCCccCCc----hhHHHHHhhCCCceeeccCCCC-CCCceeccHHHHHHHHHHHHHHH
Q 038868 25 LALKNVIAQEPSCSIPISAISKRGLEFDIH----IKVARFLRQYPSFFEEFTGPLY-SLPWFKLTQEAIEIDREEKRVYE 99 (355)
Q Consensus 25 ~~lk~li~~~P~~~ipl~~l~k~~~~Lgl~----~~~~~FlrkyP~iF~~~~~~~~-~~p~~rlT~~a~~L~~eE~~v~~ 99 (355)
..+-..|...|. +..+|++ .+|++ .+...=|.+- ++-.-..+|.. +.-.+.||++|.++..+=..+..
T Consensus 40 ~~iL~~l~~~~~---~~~~la~---~l~~~~~tvs~~l~~Le~~-Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~ 112 (144)
T 3f3x_A 40 FSILKATSEEPR---SMVYLAN---RYFVTQSAITAAVDKLEAK-GLVRRIRDSKDRRIVIVEITPKGRQVLLEANEVLR 112 (144)
T ss_dssp HHHHHHHHHSCE---EHHHHHH---HHTCCHHHHHHHHHHHHHT-TSEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC---CHHHHHH---HHCCChhHHHHHHHHHHHC-CCEEeccCCCCCceEEEEECHHHHHHHHHHHHHHH
Confidence 445556666665 7777766 78887 3344444444 34333444433 55589999999999887555554
Q ss_pred Hch
Q 038868 100 ECR 102 (355)
Q Consensus 100 ~~e 102 (355)
+..
T Consensus 113 ~~~ 115 (144)
T 3f3x_A 113 NLV 115 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
Done!