Query 038868
Match_columns 355
No_of_seqs 136 out of 189
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 06:18:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038868.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038868hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3broa1 a.4.5.28 (A:3-137) Tra 69.6 7.1 0.00052 29.6 7.4 73 25-100 32-108 (135)
2 d2frha1 a.4.5.28 (A:102-216) P 54.0 12 0.00091 27.9 6.0 64 27-93 38-105 (115)
3 d1hsja1 a.4.5.28 (A:373-487) S 39.1 42 0.0031 24.7 7.0 66 26-94 36-105 (115)
4 d2a61a1 a.4.5.28 (A:5-143) Tra 34.6 37 0.0027 25.4 6.1 71 26-101 34-108 (139)
5 d2etha1 a.4.5.28 (A:1-140) Put 33.4 45 0.0033 24.8 6.4 69 27-100 37-109 (140)
6 d2fbha1 a.4.5.28 (A:8-144) Tra 33.2 70 0.0051 23.5 7.5 69 25-98 31-104 (137)
7 d1p4xa2 a.4.5.28 (A:126-250) S 31.7 53 0.0039 24.6 6.5 65 25-93 36-105 (125)
8 d2hr3a1 a.4.5.28 (A:2-146) Pro 29.2 1E+02 0.0076 22.8 8.8 62 27-93 39-105 (145)
9 d1ub9a_ a.4.5.28 (A:) Hypothet 24.4 83 0.006 22.0 6.2 67 25-96 19-89 (100)
10 d1p4xa1 a.4.5.28 (A:1-125) Sta 23.7 1.3E+02 0.0094 22.0 8.6 70 25-98 37-111 (125)
11 d2fbka1 a.4.5.28 (A:8-179) Tra 21.0 66 0.0048 25.1 5.4 66 30-99 71-141 (172)
12 d2fbia1 a.4.5.28 (A:5-140) Pro 20.9 99 0.0072 22.6 6.3 69 26-100 34-107 (136)
13 d1lj9a_ a.4.5.28 (A:) Transcri 20.5 1.6E+02 0.011 21.8 7.5 68 27-100 34-106 (144)
No 1
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=69.58 E-value=7.1 Score=29.56 Aligned_cols=73 Identities=11% Similarity=0.189 Sum_probs=53.3
Q ss_pred HHHHHHHhcCCCCcccchhhhhcCCccCCc----hhHHHHHhhCCCceeeccCCCCCCCceeccHHHHHHHHHHHHHHHH
Q 038868 25 LALKNVIAQEPSCSIPISAISKRGLEFDIH----IKVARFLRQYPSFFEEFTGPLYSLPWFKLTQEAIEIDREEKRVYEE 100 (355)
Q Consensus 25 ~~lk~li~~~P~~~ipl~~l~k~~~~Lgl~----~~~~~FlrkyP~iF~~~~~~~~~~p~~rlT~~a~~L~~eE~~v~~~ 100 (355)
..+-..|..+|++.++..+|++ .+|++ .++..-|.+---|-........+...+.||++|.++..+=.....+
T Consensus 32 ~~vL~~l~~~~~~~it~~ela~---~~~~~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~~~~~~~~~~ 108 (135)
T d3broa1 32 MTIIDYLSRNKNKEVLQRDLES---EFSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETIILSYMDS 108 (135)
T ss_dssp HHHHHHHHHTTTSCCBHHHHHH---HHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHHH---HHCcCHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccHHHHHHHHHHHHHHHH
Confidence 4566777888999999999987 77887 4455666666666665544445677999999999998865544443
No 2
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}
Probab=54.02 E-value=12 Score=27.85 Aligned_cols=64 Identities=9% Similarity=0.039 Sum_probs=45.9
Q ss_pred HHHHHhcCCCCcccchhhhhcCCccCCc----hhHHHHHhhCCCceeeccCCCCCCCceeccHHHHHHHHH
Q 038868 27 LKNVIAQEPSCSIPISAISKRGLEFDIH----IKVARFLRQYPSFFEEFTGPLYSLPWFKLTQEAIEIDRE 93 (355)
Q Consensus 27 lk~li~~~P~~~ipl~~l~k~~~~Lgl~----~~~~~FlrkyP~iF~~~~~~~~~~p~~rlT~~a~~L~~e 93 (355)
+-..|..+|++.+++.+|.+ .++++ .+++.-|.+---|-..-.+...+.-++.||++|.+.+.+
T Consensus 38 vL~~l~~~~~~~~t~~~la~---~l~~~~~tvs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~ 105 (115)
T d2frha1 38 VLTYISENKEKEYYLKDIIN---HLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIES 105 (115)
T ss_dssp HHHHHHHTCCSEEEHHHHHH---HSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHH---HHCCCHhHHHHHHHHHHhhhhheeeecccCCceEEEEECHHHHHHHHH
Confidence 33567788888899988877 78887 455666666666654433333477799999999887765
No 3
>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}
Probab=39.15 E-value=42 Score=24.70 Aligned_cols=66 Identities=14% Similarity=-0.015 Sum_probs=44.5
Q ss_pred HHHHHHhcCCCCcccchhhhhcCCccCCc----hhHHHHHhhCCCceeeccCCCCCCCceeccHHHHHHHHHH
Q 038868 26 ALKNVIAQEPSCSIPISAISKRGLEFDIH----IKVARFLRQYPSFFEEFTGPLYSLPWFKLTQEAIEIDREE 94 (355)
Q Consensus 26 ~lk~li~~~P~~~ipl~~l~k~~~~Lgl~----~~~~~FlrkyP~iF~~~~~~~~~~p~~rlT~~a~~L~~eE 94 (355)
.+-..|...+++.+++.+|++ .+|++ .+++.=|.+---|=........+.-++.||++|.+++.+=
T Consensus 36 ~vL~~l~~~~~~~~t~~ela~---~l~~~~~~vs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~ 105 (115)
T d1hsja1 36 YILNHILRSESNEISSKEIAK---CSEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQKL 105 (115)
T ss_dssp HHHHHHHTCSCSEEEHHHHHH---SSCCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHHHHH
T ss_pred HHHHHHHccCCCCcCHHHHHH---HHCCChhhHHHHHHHHHHcCCeEEEeecCCCceEEEEECHHHHHHHHHH
Confidence 445556667777899999987 78887 3444444444444333333334778999999999988753
No 4
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=34.57 E-value=37 Score=25.37 Aligned_cols=71 Identities=10% Similarity=-0.028 Sum_probs=45.5
Q ss_pred HHHHHHhcCCCCcccchhhhhcCCccCCc----hhHHHHHhhCCCceeeccCCCCCCCceeccHHHHHHHHHHHHHHHHc
Q 038868 26 ALKNVIAQEPSCSIPISAISKRGLEFDIH----IKVARFLRQYPSFFEEFTGPLYSLPWFKLTQEAIEIDREEKRVYEEC 101 (355)
Q Consensus 26 ~lk~li~~~P~~~ipl~~l~k~~~~Lgl~----~~~~~FlrkyP~iF~~~~~~~~~~p~~rlT~~a~~L~~eE~~v~~~~ 101 (355)
.+-..|...| .+++++|++ .+|++ .+++.-|.+---|-..-.....+..++.||+.|.+++.+=.......
T Consensus 34 ~iL~~i~~~~--~~t~~~la~---~l~i~~~tvs~~l~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~~ 108 (139)
T d2a61a1 34 DILQKIYFEG--PKRPGELSV---LLGVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKVIERRENF 108 (139)
T ss_dssp HHHHHHHHHC--CBCHHHHHH---HHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--CCCHHHHHH---HhCCCcccchHHHHHHHhcCeeeeeeccCCCCeEEEEECHHHHHHHHHHHHHHHHH
Confidence 3444454443 457777776 88998 44555566666665544333346779999999999987655554443
No 5
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}
Probab=33.36 E-value=45 Score=24.83 Aligned_cols=69 Identities=16% Similarity=-0.002 Sum_probs=43.5
Q ss_pred HHHHHhcCCCCcccchhhhhcCCccCCc----hhHHHHHhhCCCceeeccCCCCCCCceeccHHHHHHHHHHHHHHHH
Q 038868 27 LKNVIAQEPSCSIPISAISKRGLEFDIH----IKVARFLRQYPSFFEEFTGPLYSLPWFKLTQEAIEIDREEKRVYEE 100 (355)
Q Consensus 27 lk~li~~~P~~~ipl~~l~k~~~~Lgl~----~~~~~FlrkyP~iF~~~~~~~~~~p~~rlT~~a~~L~~eE~~v~~~ 100 (355)
+-..|..+|+ +++.+|++ .+|++ .++.+=|.+---|=.+-.+...+.-++.||++|.+++.+-......
T Consensus 37 iL~~l~~~~~--~t~~~La~---~l~i~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~~~~~~~~~ 109 (140)
T d2etha1 37 AFLYVALFGP--KKMKEIAE---FLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEILSNFES 109 (140)
T ss_dssp HHHHHHHHCC--BCHHHHHH---HTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC--cCHHHHHH---HHCcCHHHHHHHHHHHHHCCCeeeeecccccchhhhhcCHHHHHHHHHHHHHHHH
Confidence 3445555554 56777766 88887 3344444444455444433344777999999999998866555544
No 6
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=33.22 E-value=70 Score=23.49 Aligned_cols=69 Identities=9% Similarity=-0.019 Sum_probs=42.8
Q ss_pred HHHHHHHhcCCCCcccchhhhhcCCccCCc----hhHHHHHhhCCCceeeccCCC-CCCCceeccHHHHHHHHHHHHHH
Q 038868 25 LALKNVIAQEPSCSIPISAISKRGLEFDIH----IKVARFLRQYPSFFEEFTGPL-YSLPWFKLTQEAIEIDREEKRVY 98 (355)
Q Consensus 25 ~~lk~li~~~P~~~ipl~~l~k~~~~Lgl~----~~~~~FlrkyP~iF~~~~~~~-~~~p~~rlT~~a~~L~~eE~~v~ 98 (355)
..+-..|...|+ .+++++|+. .+|++ .++..=|.+---|=. ..+|. .+.-.+.||++|.+++.+=....
T Consensus 31 ~~iL~~l~~~~~-~~t~~~la~---~~~~~~~~vs~~v~~L~~~gli~r-~~~~~D~R~~~i~lT~~G~~~~~~~~~~~ 104 (137)
T d2fbha1 31 WLVLLHLARHRD-SPTQRELAQ---SVGVEGPTLARLLDGLESQGLVRR-LAVAEDRRAKHIVLTPKADVLIADIEAIA 104 (137)
T ss_dssp HHHHHHHHHCSS-CCBHHHHHH---HHTCCHHHHHHHHHHHHHTTSEEE-ECCBTTBCSCEEEECTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CCcHHHHHH---HHCCCHHHHHHHHHHHHHcCCccc-cCCCCCCCchhhhcCHHHHHHHHHHHHHH
Confidence 344455566666 367888876 78887 334444445444443 33343 37779999999999977544433
No 7
>d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=31.67 E-value=53 Score=24.59 Aligned_cols=65 Identities=5% Similarity=0.080 Sum_probs=41.7
Q ss_pred HHHHHHHhcCCCCcccchhhhhcCCccCCc-hhHH---HHHhhCCCceeeccCCC-CCCCceeccHHHHHHHHH
Q 038868 25 LALKNVIAQEPSCSIPISAISKRGLEFDIH-IKVA---RFLRQYPSFFEEFTGPL-YSLPWFKLTQEAIEIDRE 93 (355)
Q Consensus 25 ~~lk~li~~~P~~~ipl~~l~k~~~~Lgl~-~~~~---~FlrkyP~iF~~~~~~~-~~~p~~rlT~~a~~L~~e 93 (355)
..+-..|...+++.+++.++++ .+|++ ..++ .=|.+---|=.. .+|. .+.-++.||++|.+++.+
T Consensus 36 ~~vL~~l~~~~~~~~~~~~ia~---~l~~~~~~vs~~v~~L~~~glV~r~-~~~~D~R~v~i~LT~~G~~~~~~ 105 (125)
T d1p4xa2 36 FTILAIITSQNKNIVLLKDLIE---TIHHKYPQTVRALNNLKKQGYLIKE-RSTEDERKILIHMDDAQQDHAEQ 105 (125)
T ss_dssp HHHHHHHHTTTTCCEEHHHHHH---HSSSCHHHHHHHHHHHHHHTSSEEE-ECSSSTTCEEEECCHHHHHHHHH
T ss_pred HHHHHHHHHccCCCccHHHHHH---HHCCCcchHHHHHHHHHhccCEeee-ecCCCCCeEEEEECHHHHHHHHH
Confidence 3445667777777899988877 78887 2233 333333333322 2333 367799999999988765
No 8
>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=29.22 E-value=1e+02 Score=22.79 Aligned_cols=62 Identities=11% Similarity=0.026 Sum_probs=38.8
Q ss_pred HHHHHhcCCCCcccchhhhhcCCccCCc----hhHHHHHhhCCCceeeccCCC-CCCCceeccHHHHHHHHH
Q 038868 27 LKNVIAQEPSCSIPISAISKRGLEFDIH----IKVARFLRQYPSFFEEFTGPL-YSLPWFKLTQEAIEIDRE 93 (355)
Q Consensus 27 lk~li~~~P~~~ipl~~l~k~~~~Lgl~----~~~~~FlrkyP~iF~~~~~~~-~~~p~~rlT~~a~~L~~e 93 (355)
+-..|...|+ .+++..|++ .+|++ .+++.-|.+---|= -..+|. .+.-++.||++|.+++.+
T Consensus 39 vL~~L~~~~g-~~t~~~La~---~~~~~~~~vs~~i~~L~~~glv~-r~~~~~DrR~~~i~LT~~G~~~~~~ 105 (145)
T d2hr3a1 39 VLGAIDRLGG-DVTPSELAA---AERMRSSNLAALLRELERGGLIV-RHADPQDGRRTRVSLSSEGRRNLYG 105 (145)
T ss_dssp HHHHHHHTTS-CBCHHHHHH---HTTCCHHHHHHHHHHHHHTTSEE-EEC------CCEEEECHHHHHHHHH
T ss_pred HHHHHHHcCC-CCCHHHHHH---HHCCCHHHHHHHHHHHHHcCCeE-eeeCccchhHHHhccCHHHHHHHHH
Confidence 3344555543 588888877 78887 44555566665552 233443 367799999999998765
No 9
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=24.42 E-value=83 Score=21.99 Aligned_cols=67 Identities=15% Similarity=0.044 Sum_probs=39.2
Q ss_pred HHHHHHHhcCCCCcccchhhhhcCCccCCc----hhHHHHHhhCCCceeeccCCCCCCCceeccHHHHHHHHHHHH
Q 038868 25 LALKNVIAQEPSCSIPISAISKRGLEFDIH----IKVARFLRQYPSFFEEFTGPLYSLPWFKLTQEAIEIDREEKR 96 (355)
Q Consensus 25 ~~lk~li~~~P~~~ipl~~l~k~~~~Lgl~----~~~~~FlrkyP~iF~~~~~~~~~~p~~rlT~~a~~L~~eE~~ 96 (355)
+.|-.+|..++ .+++.+|++ .+|++ .....=|.+.--|=..-.....+..+++||++|.+...+-..
T Consensus 19 ~~IL~~L~~~~--~~~~~eLa~---~l~is~~~vs~~l~~L~~~glV~~~~~~~d~r~~~~~LT~~G~~~~~~~~~ 89 (100)
T d1ub9a_ 19 LGIMIFLLPRR--KAPFSQIQK---VLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFLS 89 (100)
T ss_dssp HHHHHHHHHHS--EEEHHHHHH---HTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHhccCC--CeeHHHHHH---HHhhccccccHHHHHHhhhceeEEEEcCcCCccccccCCHHHHHHHHHHHH
Confidence 55666676553 367788866 88997 233334444433322111112355689999999887765433
No 10
>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=23.68 E-value=1.3e+02 Score=22.02 Aligned_cols=70 Identities=10% Similarity=0.169 Sum_probs=43.5
Q ss_pred HHHHHHHhcCCCCcccchhhhhcCCccCCc----hhHHHHHhhCCCceeeccCCC-CCCCceeccHHHHHHHHHHHHHH
Q 038868 25 LALKNVIAQEPSCSIPISAISKRGLEFDIH----IKVARFLRQYPSFFEEFTGPL-YSLPWFKLTQEAIEIDREEKRVY 98 (355)
Q Consensus 25 ~~lk~li~~~P~~~ipl~~l~k~~~~Lgl~----~~~~~FlrkyP~iF~~~~~~~-~~~p~~rlT~~a~~L~~eE~~v~ 98 (355)
..+-..|...|++.+++.+|++ .+++. .++..=|.+---|=..- ++. .+.-.+.||++|.+.+.+-...+
T Consensus 37 ~~iL~~l~~~~~~~~t~~eia~---~~~~~~~~vs~~l~~L~~~g~v~r~~-~~~D~R~~~i~lT~~G~~~~~~~~~~~ 111 (125)
T d1p4xa1 37 FILLTYLFHQQENTLPFKKIVS---DLCYKQSDLVQHIKVLVKHSYISKVR-SKIDERNTYISISEEQREKIAERVTLF 111 (125)
T ss_dssp HHHHHHHHSCSCSEEEHHHHHH---HSSSCGGGTHHHHHHHHHTTSCEEEE-CSSSTTSEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcCHHHHHH---HhCCCcchHHHHHHHHHHCCCceeec-ccCCCCeEEEEECHHHHHHHHHHHHHH
Confidence 3444567777888889888877 66776 33333333333332222 333 36779999999988877644433
No 11
>d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]}
Probab=21.01 E-value=66 Score=25.10 Aligned_cols=66 Identities=9% Similarity=-0.087 Sum_probs=36.6
Q ss_pred HHhcCCCCcccchhhhhcCCccCCc----hhHHHHHhhCCCceeeccCCC-CCCCceeccHHHHHHHHHHHHHHH
Q 038868 30 VIAQEPSCSIPISAISKRGLEFDIH----IKVARFLRQYPSFFEEFTGPL-YSLPWFKLTQEAIEIDREEKRVYE 99 (355)
Q Consensus 30 li~~~P~~~ipl~~l~k~~~~Lgl~----~~~~~FlrkyP~iF~~~~~~~-~~~p~~rlT~~a~~L~~eE~~v~~ 99 (355)
+..+.|...++.++|++ .+|++ .++..=|.+---|-. ..+|. .+.-.+.||++|.+++.+=.....
T Consensus 71 L~~~~~~~~lt~~eLa~---~l~i~~~tvsr~l~~Le~~GlV~r-~~~~~DrR~~~i~LT~~G~~l~~~~~~~~~ 141 (172)
T d2fbka1 71 LYRSAPPEGLRPTELSA---LAAISGPSTSNRIVRLLEKGLIER-REDERDRRSASIRLTPQGRALVTHLLPAHL 141 (172)
T ss_dssp HHHHCCSSCBCHHHHHH---HCSCCSGGGSSHHHHHHHHTSEEC-CC-------CCBEECHHHHHHHHHHHHHHH
T ss_pred HHhhCCCCCcCHHHHHH---HHCcCHhHHHHHHHHHHhCCCeee-eccccchhhHHhhcCHHHHHHHHHHHHHHH
Confidence 33345666788888876 67776 233333333333333 23343 366789999999999876444443
No 12
>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=20.88 E-value=99 Score=22.64 Aligned_cols=69 Identities=12% Similarity=0.057 Sum_probs=42.8
Q ss_pred HHHHHHhcCCCCcccchhhhhcCCccCCc----hhHHHHHhhCCCceeeccCCCC-CCCceeccHHHHHHHHHHHHHHHH
Q 038868 26 ALKNVIAQEPSCSIPISAISKRGLEFDIH----IKVARFLRQYPSFFEEFTGPLY-SLPWFKLTQEAIEIDREEKRVYEE 100 (355)
Q Consensus 26 ~lk~li~~~P~~~ipl~~l~k~~~~Lgl~----~~~~~FlrkyP~iF~~~~~~~~-~~p~~rlT~~a~~L~~eE~~v~~~ 100 (355)
.+-..|..++ .+++.+|++ .+|++ .+++.-|.+---|=. ..+|.+ +.-++.||++|.++..+=.....+
T Consensus 34 ~vL~~l~~~~--~~t~~~la~---~~~i~~~~vs~~i~~L~~~gli~r-~~~~~D~R~~~l~lT~~G~~~~~~~~~~~~~ 107 (136)
T d2fbia1 34 RVIRILRQQG--EMESYQLAN---QACILRPSMTGVLARLERDGIVRR-WKAPKDQRRVYVNLTEKGQQCFVSMSGDMEK 107 (136)
T ss_dssp HHHHHHHHHC--SEEHHHHHH---HTTCCHHHHHHHHHHHHHTTSEEE-EEETTEEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--CCCHHHHHH---HHCCCHHHHHHHHHHHHHCCCEEE-eecCccCchhhhccCHHHHHHHHHHHHHHHH
Confidence 3334555544 467788776 78887 344455555544433 334443 667999999999998765544444
No 13
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}
Probab=20.47 E-value=1.6e+02 Score=21.79 Aligned_cols=68 Identities=9% Similarity=0.077 Sum_probs=40.4
Q ss_pred HHHHHhcCCCCcccchhhhhcCCccCCc----hhHHHHHhhCCCceeeccCCC-CCCCceeccHHHHHHHHHHHHHHHH
Q 038868 27 LKNVIAQEPSCSIPISAISKRGLEFDIH----IKVARFLRQYPSFFEEFTGPL-YSLPWFKLTQEAIEIDREEKRVYEE 100 (355)
Q Consensus 27 lk~li~~~P~~~ipl~~l~k~~~~Lgl~----~~~~~FlrkyP~iF~~~~~~~-~~~p~~rlT~~a~~L~~eE~~v~~~ 100 (355)
+-..|..+|+ ++..+|++ .++++ .+++.=|.+---|-. ..+|. .+.-.+.||++|.++..+-......
T Consensus 34 iL~~i~~~~~--~t~~~la~---~l~i~~~tvs~~l~~L~~~glI~r-~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~ 106 (144)
T d1lj9a_ 34 YLVRVCENPG--IIQEKIAE---LIKVDRTTAARAIKRLEEQGFIYR-QEDASNKKIKRIYATEKGKNVYPIIVRENQH 106 (144)
T ss_dssp HHHHHHHSTT--EEHHHHHH---HHTCCHHHHHHHHHHHHHTTSEEE-EECSSCTTCEEEEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC--CCHHHHHH---HHCccHhhHHHHHHHHHhhhcccc-cCCCCCCCccccccCHHHHHHHHHHHHHHHH
Confidence 3344556654 67777766 77887 223333333333333 33444 3677999999999998765544433
Done!