BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038873
         (86 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1W6K|A Chain A, Structure Of Human Osc In Complex With Lanosterol
          Length = 732

 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/83 (51%), Positives = 50/83 (60%)

Query: 1   VLGVYEWSGNNPLPPEIWLLPYFLPFHPGRMWCHCRMVYLPMSYLYGTRFVGPFNSLILS 60
           VL VY W G N L PE+WL P + P HP  +WCHCR VYLPMSY Y  R     + L+ S
Sbjct: 199 VLNVYSWEGLNTLFPEMWLFPDWAPAHPSTLWCHCRQVYLPMSYCYAVRLSAAEDPLVQS 258

Query: 61  LRKELYTLPYHYIDWDHARNLCA 83
           LR+ELY   +  IDW   RN  A
Sbjct: 259 LRQELYVEDFASIDWLAQRNNVA 281


>pdb|1W6J|A Chain A, Structure Of Human Osc In Complex With Ro 48-8071
          Length = 732

 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/83 (51%), Positives = 50/83 (60%)

Query: 1   VLGVYEWSGNNPLPPEIWLLPYFLPFHPGRMWCHCRMVYLPMSYLYGTRFVGPFNSLILS 60
           VL VY W G N L PE+WL P + P HP  +WCHCR VYLPMSY Y  R     + L+ S
Sbjct: 199 VLNVYSWEGLNTLFPEMWLFPDWAPAHPSTLWCHCRQVYLPMSYCYAVRLSAAEDPLVQS 258

Query: 61  LRKELYTLPYHYIDWDHARNLCA 83
           LR+ELY   +  IDW   RN  A
Sbjct: 259 LRQELYVEDFASIDWLAQRNNVA 281


>pdb|1FSK|C Chain C, Complex Formation Between A Fab Fragment Of A Monoclonal
          Igg Antibody And The Major Allergen From Birch Pollen
          Bet V 1
 pdb|1FSK|F Chain F, Complex Formation Between A Fab Fragment Of A Monoclonal
          Igg Antibody And The Major Allergen From Birch Pollen
          Bet V 1
 pdb|1FSK|I Chain I, Complex Formation Between A Fab Fragment Of A Monoclonal
          Igg Antibody And The Major Allergen From Birch Pollen
          Bet V 1
 pdb|1FSK|L Chain L, Complex Formation Between A Fab Fragment Of A Monoclonal
          Igg Antibody And The Major Allergen From Birch Pollen
          Bet V 1
          Length = 220

 Score = 28.1 bits (61), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 47 GTRFVGPFNSLILSLRKELYTLPYHYIDWDHAR 79
          GT  V P  S+ILS +   YT   ++I+W   R
Sbjct: 8  GTELVRPGASVILSCKASGYTFTSYWINWVKQR 40


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.147    0.543 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,116,943
Number of Sequences: 62578
Number of extensions: 110193
Number of successful extensions: 295
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 291
Number of HSP's gapped (non-prelim): 6
length of query: 86
length of database: 14,973,337
effective HSP length: 54
effective length of query: 32
effective length of database: 11,594,125
effective search space: 371012000
effective search space used: 371012000
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)