Query 038873
Match_columns 86
No_of_seqs 101 out of 535
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 04:08:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038873.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038873hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03012 Camelliol C synthase 100.0 3E-34 6.4E-39 236.5 4.8 86 1-86 227-312 (759)
2 PLN02993 lupeol synthase 100.0 8.7E-34 1.9E-38 233.9 4.6 86 1-86 227-312 (763)
3 TIGR03463 osq_cycl 2,3-oxidosq 100.0 1.4E-30 3E-35 211.2 4.8 86 1-86 120-205 (634)
4 KOG0497 Oxidosqualene-lanoster 100.0 8.5E-30 1.9E-34 207.9 1.0 86 1-86 227-312 (760)
5 cd02892 SQCY_1 Squalene cyclas 99.9 6.4E-29 1.4E-33 200.4 4.2 84 1-86 123-206 (634)
6 TIGR01507 hopene_cyclase squal 99.9 4.6E-25 1E-29 179.1 3.5 69 1-72 139-208 (635)
7 TIGR01787 squalene_cyclas squa 99.8 6E-22 1.3E-26 160.6 4.6 78 1-86 123-200 (621)
8 COG1657 SqhC Squalene cyclase 98.1 1.1E-06 2.5E-11 71.1 1.1 40 1-41 39-78 (517)
9 KOG0497 Oxidosqualene-lanoster 93.1 0.06 1.3E-06 45.7 2.1 73 2-74 243-315 (760)
10 COG1657 SqhC Squalene cyclase 88.8 0.25 5.4E-06 40.6 1.7 83 2-84 342-429 (517)
11 PF09859 Oxygenase-NA: Oxygena 22.0 46 0.001 23.9 1.0 20 49-68 6-25 (173)
No 1
>PLN03012 Camelliol C synthase
Probab=100.00 E-value=3e-34 Score=236.49 Aligned_cols=86 Identities=64% Similarity=1.430 Sum_probs=84.8
Q ss_pred CceeeecCCCCCCCchhhhcCCCCCCCcCcchhhhhhhHHHHHHHhhccccccCChhhHhhhhhhccCCCCCcCccccCc
Q 038873 1 VLGVYEWSGNNPLPPEIWLLPYFLPFHPGRMWCHCRMVYLPMSYLYGTRFVGPFNSLILSLRKELYTLPYHYIDWDHARN 80 (86)
Q Consensus 1 l~G~y~W~g~~~iPpEl~llP~~~P~~~~~~~~~~R~~~~Pm~~l~~~r~~~~~~~~~~~lr~El~~~~~~~i~w~~~r~ 80 (86)
+||+|+|+|+|+|||||||||+|+|||++|||||||+||+||+||+++||+++.++++.+||+|||++||++|+|.++||
T Consensus 227 ~lG~y~W~g~np~PpElwLLP~~~P~hp~~~~~~~R~vy~Pmsyly~~R~~~~~~~~i~~lr~ELy~~py~~i~w~~~r~ 306 (759)
T PLN03012 227 ILGVFDWSGSNPMPPEFWILPSFFPIHPAKMWCYCRLVYLPMSYLYGKRFVGPISPLILQLREEIYLQPYAEINWMKARH 306 (759)
T ss_pred HcCccccCCCCCCChhHHHccCcCCccHHHHHHHHHHHHHHHHHHhcCCccccCCchhhhhHHHhCCCCccccChhhhcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCC
Q 038873 81 LCAKVQ 86 (86)
Q Consensus 81 ~~~~~d 86 (86)
+||++|
T Consensus 307 ~~a~~D 312 (759)
T PLN03012 307 LCAKED 312 (759)
T ss_pred cccccc
Confidence 999998
No 2
>PLN02993 lupeol synthase
Probab=100.00 E-value=8.7e-34 Score=233.86 Aligned_cols=86 Identities=63% Similarity=1.298 Sum_probs=84.6
Q ss_pred CceeeecCCCCCCCchhhhcCCCCCCCcCcchhhhhhhHHHHHHHhhccccccCChhhHhhhhhhccCCCCCcCccccCc
Q 038873 1 VLGVYEWSGNNPLPPEIWLLPYFLPFHPGRMWCHCRMVYLPMSYLYGTRFVGPFNSLILSLRKELYTLPYHYIDWDHARN 80 (86)
Q Consensus 1 l~G~y~W~g~~~iPpEl~llP~~~P~~~~~~~~~~R~~~~Pm~~l~~~r~~~~~~~~~~~lr~El~~~~~~~i~w~~~r~ 80 (86)
+||+|+|+|+|+||||+||||+|+|||+++||||||+||+||+||+++||+++.++++.+||+|||.+||++|+|.++|+
T Consensus 227 llG~y~W~g~~p~PpElwLLP~~~P~hp~~~~~~~R~v~vPmsyl~~~r~~~~~~~~i~~lr~ELy~~py~~i~~~~~r~ 306 (763)
T PLN02993 227 ILGIYDWSGTNPMPPEIWLLPSFLPIHLGKTLCYTRMVYMPMSYLYGKRFVGPITPLIMLLREELHLQPYEEINWNKARR 306 (763)
T ss_pred HcCCcccCCCCCCChhHHHccCcCCccHHHhHHhhhhhHHhHHHHhcCCcccCCCchhhhhhHHhccCCchhcChHhhcC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCC
Q 038873 81 LCAKVQ 86 (86)
Q Consensus 81 ~~~~~d 86 (86)
.|+++|
T Consensus 307 ~~~~~d 312 (763)
T PLN02993 307 LCAKED 312 (763)
T ss_pred CccccC
Confidence 999998
No 3
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.96 E-value=1.4e-30 Score=211.17 Aligned_cols=86 Identities=51% Similarity=0.982 Sum_probs=83.2
Q ss_pred CceeeecCCCCCCCchhhhcCCCCCCCcCcchhhhhhhHHHHHHHhhccccccCChhhHhhhhhhccCCCCCcCccccCc
Q 038873 1 VLGVYEWSGNNPLPPEIWLLPYFLPFHPGRMWCHCRMVYLPMSYLYGTRFVGPFNSLILSLRKELYTLPYHYIDWDHARN 80 (86)
Q Consensus 1 l~G~y~W~g~~~iPpEl~llP~~~P~~~~~~~~~~R~~~~Pm~~l~~~r~~~~~~~~~~~lr~El~~~~~~~i~w~~~r~ 80 (86)
+||+|+|+|+|+|||||||||+|||||++|||||+|+||+||+||+++|++++.++++.+||+|||++||++|+|.+.|+
T Consensus 120 ~~g~~~W~~~~~~P~El~lLP~~~P~~~~~~~~~~R~v~~p~~~l~~~r~~~~~~~~~~~l~~EL~~~~~~~~~~~~~~~ 199 (634)
T TIGR03463 120 LLGLYGRGGLQPVPPELWLLPESLPFHPSRFYCHTRMVYLPMSWLYGRRARAPLTPLRAALRQELYDGGYGQVDFVAARE 199 (634)
T ss_pred HcCcCCcccCCCCCHHHHHccccCCcCHHHHHHHhHHHHHhHHHHhcCCcccCCCcchhhhhHHhccCCccccccccccC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCC
Q 038873 81 LCAKVQ 86 (86)
Q Consensus 81 ~~~~~d 86 (86)
.|+++|
T Consensus 200 ~~~~~d 205 (634)
T TIGR03463 200 RVAPTD 205 (634)
T ss_pred cccccc
Confidence 998765
No 4
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=99.95 E-value=8.5e-30 Score=207.87 Aligned_cols=86 Identities=71% Similarity=1.457 Sum_probs=84.8
Q ss_pred CceeeecCCCCCCCchhhhcCCCCCCCcCcchhhhhhhHHHHHHHhhccccccCChhhHhhhhhhccCCCCCcCccccCc
Q 038873 1 VLGVYEWSGNNPLPPEIWLLPYFLPFHPGRMWCHCRMVYLPMSYLYGTRFVGPFNSLILSLRKELYTLPYHYIDWDHARN 80 (86)
Q Consensus 1 l~G~y~W~g~~~iPpEl~llP~~~P~~~~~~~~~~R~~~~Pm~~l~~~r~~~~~~~~~~~lr~El~~~~~~~i~w~~~r~ 80 (86)
++|+|+|+|+|++|||+|+||+|+|+|++++|||+|.+|+||+|+|++||+++.+|++..||||||++||++|+|.++||
T Consensus 227 vLgvydWsG~np~pPElwllP~~~P~h~g~~w~~~R~vy~pmsYlygkrfv~~~tpli~~LreELy~~py~~Inw~~~Rn 306 (760)
T KOG0497|consen 227 VLGVYDWSGVNPLPPELWLLPSFLPIHPGTLWCHCRDVYMPMSYLYGKRFVAPPTPLILQLREELYPEPYDKINWSKARN 306 (760)
T ss_pred hcccccCcCCCCCCchhhccccccCCCCCceEEEecceecccccceeeeeeccCChHHHHHhhhhcCCChhhhhHHHHhh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCC
Q 038873 81 LCAKVQ 86 (86)
Q Consensus 81 ~~~~~d 86 (86)
.||++|
T Consensus 307 ~~akeD 312 (760)
T KOG0497|consen 307 LCAKED 312 (760)
T ss_pred cccccc
Confidence 999998
No 5
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.95 E-value=6.4e-29 Score=200.44 Aligned_cols=84 Identities=58% Similarity=1.219 Sum_probs=79.5
Q ss_pred CceeeecCCCCCCCchhhhcCCCCCCCcCcchhhhhhhHHHHHHHhhccccccCChhhHhhhhhhccCCCCCcCccccCc
Q 038873 1 VLGVYEWSGNNPLPPEIWLLPYFLPFHPGRMWCHCRMVYLPMSYLYGTRFVGPFNSLILSLRKELYTLPYHYIDWDHARN 80 (86)
Q Consensus 1 l~G~y~W~g~~~iPpEl~llP~~~P~~~~~~~~~~R~~~~Pm~~l~~~r~~~~~~~~~~~lr~El~~~~~~~i~w~~~r~ 80 (86)
+||+|+|+++|+||||+||||+|+|||+++||||+|+||+||+||+++|++++.+++...+|+|||.+|+++|+|..+|+
T Consensus 123 ~~G~~~W~~~~~~P~El~llP~~~p~~~~~~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~ 202 (634)
T cd02892 123 LLGVYPWEGVPPLPPELWLLPSWLPFHPYKFWCWARTVYVPMSYLYGKRPVAPITPLVLSLRDELYVEPYEKINWYKHRN 202 (634)
T ss_pred HcCccccccCCCCCHhHHhcCCcCCccHHHHHHHHHHHHHhHHHHhcCCcccCCCCccccchHHhCCCCccccccccccc
Confidence 58999999999999999999999999999999999999999999999999999888888999999999999999999987
Q ss_pred ccccCC
Q 038873 81 LCAKVQ 86 (86)
Q Consensus 81 ~~~~~d 86 (86)
+++|
T Consensus 203 --~~~~ 206 (634)
T cd02892 203 --DLYD 206 (634)
T ss_pred --cccc
Confidence 4443
No 6
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.90 E-value=4.6e-25 Score=179.14 Aligned_cols=69 Identities=32% Similarity=0.518 Sum_probs=64.3
Q ss_pred CceeeecCCCCCCCchhhhcCCCCCCCcCcchhhhhhhHHHHHHHhhccccccCChhhHhhh-hhhccCCCCC
Q 038873 1 VLGVYEWSGNNPLPPEIWLLPYFLPFHPGRMWCHCRMVYLPMSYLYGTRFVGPFNSLILSLR-KELYTLPYHY 72 (86)
Q Consensus 1 l~G~y~W~g~~~iPpEl~llP~~~P~~~~~~~~~~R~~~~Pm~~l~~~r~~~~~~~~~~~lr-~El~~~~~~~ 72 (86)
+||+|+|+++|+|||||||||+|+|||+++||||+|+||+||+||+++|++++.+ .++| +|||.+++++
T Consensus 139 l~G~~~W~~~~~~P~El~llP~~~p~~~~~~~~~~R~~~~P~~~l~~~r~~~~~~---~~~~~~eL~~~~~~~ 208 (635)
T TIGR01507 139 LVGEYPWRGVPMVPPEIMLLPKRFPFNIYEFSSWARATVVPLSIVCSRKPVFPLP---ERARVPELYETDVPK 208 (635)
T ss_pred HcCCcCcccCCCCCHHHHhCCCcCCccHHHHHHHHHHHHHHHHHHhcCCCccCCC---cccChHhhcCCChHH
Confidence 5899999999999999999999999999999999999999999999999999866 4466 9999999953
No 7
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.85 E-value=6e-22 Score=160.56 Aligned_cols=78 Identities=56% Similarity=1.121 Sum_probs=71.5
Q ss_pred CceeeecCCCCCCCchhhhcCCCCCCCcCcchhhhhhhHHHHHHHhhccccccCChhhHhhhhhhccCCCCCcCccccCc
Q 038873 1 VLGVYEWSGNNPLPPEIWLLPYFLPFHPGRMWCHCRMVYLPMSYLYGTRFVGPFNSLILSLRKELYTLPYHYIDWDHARN 80 (86)
Q Consensus 1 l~G~y~W~g~~~iPpEl~llP~~~P~~~~~~~~~~R~~~~Pm~~l~~~r~~~~~~~~~~~lr~El~~~~~~~i~w~~~r~ 80 (86)
+||+|+|+++|+|||||||||+|+|||++++||++|+|++||+|+++.|++.+.++ |+|||++| +++ .+.|+
T Consensus 123 ~~G~~~W~~~~~~P~El~llP~~~p~~~~~~w~~~~~v~l~~~~~~~~~~~~~~~~-----~~el~~~~-~~~--~~~~~ 194 (621)
T TIGR01787 123 LLGVYPWEGVPPLPPEIMLLPKWLPIHPSKSWCRCRMVYLPMSYCYGERLSAPIDP-----REELYVED-DSI--RAQRN 194 (621)
T ss_pred HcCccccccCCCCCHhHHhcCcccCcCcchhhhhhhhHHHHHHHHcCccccCCCCc-----chhhcCCC-cch--hhccC
Confidence 68999999999999999999999999999999999999999999999999998776 79999999 777 46787
Q ss_pred ccccCC
Q 038873 81 LCAKVQ 86 (86)
Q Consensus 81 ~~~~~d 86 (86)
.++++|
T Consensus 195 ~~~~~~ 200 (621)
T TIGR01787 195 NVAKED 200 (621)
T ss_pred CCCccc
Confidence 777654
No 8
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=98.08 E-value=1.1e-06 Score=71.09 Aligned_cols=40 Identities=40% Similarity=0.652 Sum_probs=38.9
Q ss_pred CceeeecCCCCCCCchhhhcCCCCCCCcCcchhhhhhhHHH
Q 038873 1 VLGVYEWSGNNPLPPEIWLLPYFLPFHPGRMWCHCRMVYLP 41 (86)
Q Consensus 1 l~G~y~W~g~~~iPpEl~llP~~~P~~~~~~~~~~R~~~~P 41 (86)
++|+|.|. .++.|++.|+||.-+|+|++++|||+|.+++|
T Consensus 39 ~~~~y~w~-~~~~p~~~~~lp~~~p~~~~~~~~~~r~~~~p 78 (517)
T COG1657 39 VLGAYIWR-APSAPPWVMLLPNTLPVHFYQMSSWARSSTVP 78 (517)
T ss_pred Hhcceeec-cCCCCchHhhCCCcccchHHHHHHHhhhcccc
Confidence 47999999 99999999999999999999999999999999
No 9
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=93.12 E-value=0.06 Score=45.71 Aligned_cols=73 Identities=4% Similarity=-0.336 Sum_probs=64.9
Q ss_pred ceeeecCCCCCCCchhhhcCCCCCCCcCcchhhhhhhHHHHHHHhhccccccCChhhHhhhhhhccCCCCCcC
Q 038873 2 LGVYEWSGNNPLPPEIWLLPYFLPFHPGRMWCHCRMVYLPMSYLYGTRFVGPFNSLILSLRKELYTLPYHYID 74 (86)
Q Consensus 2 ~G~y~W~g~~~iPpEl~llP~~~P~~~~~~~~~~R~~~~Pm~~l~~~r~~~~~~~~~~~lr~El~~~~~~~i~ 74 (86)
|-++||.+.+..+++.+.++.+++++.|..++.-+..+.||.+.+..+..++.-..++-.+.+.+...++.+.
T Consensus 243 lwllP~~~P~h~g~~w~~~R~vy~pmsYlygkrfv~~~tpli~~LreELy~~py~~Inw~~~Rn~~akeDlyy 315 (760)
T KOG0497|consen 243 LWLLPSFLPIHPGTLWCHCRDVYMPMSYLYGKRFVAPPTPLILQLREELYPEPYDKINWSKARNLCAKEDLYY 315 (760)
T ss_pred hhccccccCCCCCceEEEecceecccccceeeeeeccCChHHHHHhhhhcCCChhhhhHHHHhhccccccccC
Confidence 4578999999999999999999999999999999999999999999999877667788888888887776554
No 10
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=88.83 E-value=0.25 Score=40.60 Aligned_cols=83 Identities=19% Similarity=0.133 Sum_probs=69.5
Q ss_pred ceeeecC--CCCCCCchhhhcCCCCCCCcCcchhhhhhhHHHHHHHhhccccccCC---hhhHhhhhhhccCCCCCcCcc
Q 038873 2 LGVYEWS--GNNPLPPEIWLLPYFLPFHPGRMWCHCRMVYLPMSYLYGTRFVGPFN---SLILSLRKELYTLPYHYIDWD 76 (86)
Q Consensus 2 ~G~y~W~--g~~~iPpEl~llP~~~P~~~~~~~~~~R~~~~Pm~~l~~~r~~~~~~---~~~~~lr~El~~~~~~~i~w~ 76 (86)
++.|.+. +.+.-...-|||+.+.|.+.+..+.+-+.+|.+|..+.+.+..++.. +.+.++++.+....+++..|.
T Consensus 342 ~~~yl~~~~~~~i~~a~e~LL~~Q~~~GsW~g~w~v~~iY~~s~a~~~l~~~g~~~~~~~~v~~~~~~l~~~~~~~~Gw~ 421 (517)
T COG1657 342 LNAYLEAYDGQPIERALEWLLSDQEPDGSWYGRWGVCYIYGTSGALSALALVGETDENEVLVRKLISWLVSKQMPDGGWG 421 (517)
T ss_pred hhhccccccCCcccHHHhhhhhhccccCceeeEEEEEEEEehhhhhhhhhccCccccchHHHHHHHHHhhhccccCCCcc
Confidence 3456663 67778888999999999999999999999999999999999998644 467888899999999999998
Q ss_pred ccCccccc
Q 038873 77 HARNLCAK 84 (86)
Q Consensus 77 ~~r~~~~~ 84 (86)
.++..++.
T Consensus 422 e~~~~~~~ 429 (517)
T COG1657 422 EAKEAISD 429 (517)
T ss_pred cccccccc
Confidence 77765543
No 11
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=22.03 E-value=46 Score=23.92 Aligned_cols=20 Identities=30% Similarity=0.497 Sum_probs=16.7
Q ss_pred cccccCChhhHhhhhhhccC
Q 038873 49 RFVGPFNSLILSLRKELYTL 68 (86)
Q Consensus 49 r~~~~~~~~~~~lr~El~~~ 68 (86)
-|..|+|+.++.||+.||..
T Consensus 6 Yf~~PLP~~~~~lR~~lY~~ 25 (173)
T PF09859_consen 6 YFAYPLPEPLQALREALYPR 25 (173)
T ss_pred ecCCCCCHHHHHHHHHHhHH
Confidence 35678899999999999964
Done!