Query 038873
Match_columns 86
No_of_seqs 101 out of 535
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 06:21:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038873.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038873hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w6k_A Lanosterol synthase; cy 100.0 1.6E-31 5.4E-36 217.5 5.5 86 1-86 199-284 (732)
2 2sqc_A Squalene-hopene cyclase 99.9 1.7E-25 5.7E-30 178.8 4.7 75 1-77 136-210 (631)
3 1g92_A Poneratoxin, PAC-TX; ne 17.5 72 0.0025 15.1 1.5 20 39-61 1-20 (26)
4 3kj0_B BCL-2-like protein 11; 12.8 49 0.0017 16.0 0.2 7 13-19 4-10 (27)
5 2wh6_B BCL-2-like protein 11; 11.6 36 0.0012 16.4 -0.5 6 13-18 2-7 (26)
6 1tuw_A Tetracenomycin polyketi 8.9 1.8E+02 0.006 18.4 1.9 30 54-84 68-99 (109)
7 3ktp_B Trinucleotide repeat-co 7.6 1.3E+02 0.0044 13.9 0.6 7 6-12 15-21 (22)
8 2quo_A Heat-labIle enterotoxin 7.1 1.2E+02 0.0041 19.1 0.5 12 3-14 29-40 (126)
9 2kyg_C Protein CBFA2T1; protei 7.0 2E+02 0.0067 14.9 1.2 11 8-18 7-17 (38)
10 2zk9_X Protein-glutaminase; de 5.4 2.9E+02 0.0099 19.1 1.7 37 2-43 15-52 (185)
No 1
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.97 E-value=1.6e-31 Score=217.46 Aligned_cols=86 Identities=50% Similarity=0.993 Sum_probs=83.8
Q ss_pred CceeeecCCCCCCCchhhhcCCCCCCCcCcchhhhhhhHHHHHHHhhccccccCChhhHhhhhhhccCCCCCcCccccCc
Q 038873 1 VLGVYEWSGNNPLPPEIWLLPYFLPFHPGRMWCHCRMVYLPMSYLYGTRFVGPFNSLILSLRKELYTLPYHYIDWDHARN 80 (86)
Q Consensus 1 l~G~y~W~g~~~iPpEl~llP~~~P~~~~~~~~~~R~~~~Pm~~l~~~r~~~~~~~~~~~lr~El~~~~~~~i~w~~~r~ 80 (86)
+||+|+|+|+|+||||+||||+|+|||+++||||||+||+||+|++++||+++.+|++.+||+|||++||++|+|.++|+
T Consensus 199 ~~g~~~W~~~~~~PpE~~llP~~~p~~~~~~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~lr~el~~~~~~~~~~~~~r~ 278 (732)
T 1w6k_A 199 VLNVYSWEGLNTLFPEMWLFPDWAPAHPSTLWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRN 278 (732)
T ss_dssp HTTSSCGGGSCCCCGGGGGSCTTSTTCGGGSCHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHTTSCSSCGGGCCSGGGTT
T ss_pred HcCCCCcccCCCCCHHHHHccCcCCCCHHHHHHHHHHHHHhHHHHhhcCCCCCCCcchhhHHHHhcCCCccccchhhhcc
Confidence 58999999999999999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred ccccCC
Q 038873 81 LCAKVQ 86 (86)
Q Consensus 81 ~~~~~d 86 (86)
.|+++|
T Consensus 279 ~~~~~d 284 (732)
T 1w6k_A 279 NVAPDE 284 (732)
T ss_dssp CCCGGG
T ss_pred cccccc
Confidence 999876
No 2
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.91 E-value=1.7e-25 Score=178.79 Aligned_cols=75 Identities=21% Similarity=0.301 Sum_probs=70.8
Q ss_pred CceeeecCCCCCCCchhhhcCCCCCCCcCcchhhhhhhHHHHHHHhhccccccCChhhHhhhhhhccCCCCCcCccc
Q 038873 1 VLGVYEWSGNNPLPPEIWLLPYFLPFHPGRMWCHCRMVYLPMSYLYGTRFVGPFNSLILSLRKELYTLPYHYIDWDH 77 (86)
Q Consensus 1 l~G~y~W~g~~~iPpEl~llP~~~P~~~~~~~~~~R~~~~Pm~~l~~~r~~~~~~~~~~~lr~El~~~~~~~i~w~~ 77 (86)
+||+|+|+|+|+||||+||||+|+|||+++||||+|++|+||+|++++||+++.++. .+| +|||+++|++|+|..
T Consensus 136 ~~G~~~w~~~~~~p~e~~llp~~~p~~~~~~~~~~R~~~~P~~~l~~~r~~~~~~~~-~~l-~el~~~~~~~~~~~~ 210 (631)
T 2sqc_A 136 LVGEYPWEKVPMVPPEIMFLGKRMPLNIYEFGSWARATVVALSIVMSRQPVFPLPER-ARV-PELYETDVPPRRRGA 210 (631)
T ss_dssp HTTSSCGGGSCCCCGGGGGSCTTSTTCGGGSCHHHHHHHHHHHHHHHHCCCCCCCGG-GCC-GGGGCCSSCCCCCCC
T ss_pred HcCCCCcccCCCCCHHHHHcccccccCHhHhHHHHHHHHHhHHHHhhCCCccCCCCC-CCH-HHhcCCCccccCccc
Confidence 589999999999999999999999999999999999999999999999999997666 478 999999999999964
No 3
>1g92_A Poneratoxin, PAC-TX; neurotoxin, sodium channel inhibitor; NMR {Synthetic} SCOP: j.19.1.2
Probab=17.47 E-value=72 Score=15.11 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=12.6
Q ss_pred HHHHHHHhhccccccCChhhHhh
Q 038873 39 YLPMSYLYGTRFVGPFNSLILSL 61 (86)
Q Consensus 39 ~~Pm~~l~~~r~~~~~~~~~~~l 61 (86)
|+|++++-+.... +|.++++
T Consensus 1 flpllilgsllmt---ppviqai 20 (26)
T 1g92_A 1 FLPLLILGSLLMT---PPVIQAI 20 (26)
T ss_dssp CHHHHHHHTCSSS---CCTTTHH
T ss_pred CchHHHHHHHhcC---cHHHHHH
Confidence 4788888766554 4455555
No 4
>3kj0_B BCL-2-like protein 11; BH3, apoptosis, protein-peptide complex, alternative splicing, cytoplasm, developmental protein, differentiation; 1.70A {Homo sapiens} PDB: 2pqk_B
Probab=12.84 E-value=49 Score=16.01 Aligned_cols=7 Identities=57% Similarity=1.146 Sum_probs=4.3
Q ss_pred CCchhhh
Q 038873 13 LPPEIWL 19 (86)
Q Consensus 13 iPpEl~l 19 (86)
|+||||.
T Consensus 4 ~~PE~wi 10 (27)
T 3kj0_B 4 GRPEIWY 10 (27)
T ss_dssp CCHHHHH
T ss_pred CCchhHH
Confidence 5666663
No 5
>2wh6_B BCL-2-like protein 11; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Homo sapiens} PDB: 2v6q_B 2nl9_B 3fdl_B 3io8_B 2vm6_B 3io9_B 3d7v_B 3kj1_B 3kz0_C 3kj2_B
Probab=11.65 E-value=36 Score=16.41 Aligned_cols=6 Identities=67% Similarity=1.736 Sum_probs=2.6
Q ss_pred CCchhh
Q 038873 13 LPPEIW 18 (86)
Q Consensus 13 iPpEl~ 18 (86)
|+||+|
T Consensus 2 m~PE~~ 7 (26)
T 2wh6_B 2 MRPEIW 7 (26)
T ss_dssp CHHHHH
T ss_pred CChHHH
Confidence 344444
No 6
>1tuw_A Tetracenomycin polyketide synthesis protein TCMI; dimeric ??? ferredoxin-like fold tetracenomycin C biosynthes unknown function; 1.90A {Streptomyces glaucescens} SCOP: d.58.4.8
Probab=8.93 E-value=1.8e+02 Score=18.45 Aligned_cols=30 Identities=23% Similarity=0.561 Sum_probs=21.2
Q ss_pred CChhhHhhhhhh--ccCCCCCcCccccCccccc
Q 038873 54 FNSLILSLRKEL--YTLPYHYIDWDHARNLCAK 84 (86)
Q Consensus 54 ~~~~~~~lr~El--~~~~~~~i~w~~~r~~~~~ 84 (86)
..|.+.++-+.| |+.+|+- .|...+...|.
T Consensus 68 ~~P~f~~i~~~L~~yi~pYdP-tWr~P~DamA~ 99 (109)
T 1tuw_A 68 SHPLFQEVNERVGQYLTPYAQ-DWEELKDSKAE 99 (109)
T ss_dssp SCGGGHHHHHHHHTTEEESST-TCCSGGGGBCC
T ss_pred cCcHHHHHHHHHHHhcCCCCC-CCCChhhhhhh
Confidence 356666665544 6789998 99888777665
No 7
>3ktp_B Trinucleotide repeat-containing gene 6C protein; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding; 1.50A {Homo sapiens}
Probab=7.63 E-value=1.3e+02 Score=13.91 Aligned_cols=7 Identities=29% Similarity=0.819 Sum_probs=4.5
Q ss_pred ecCCCCC
Q 038873 6 EWSGNNP 12 (86)
Q Consensus 6 ~W~g~~~ 12 (86)
+|+|...
T Consensus 15 pwkG~~~ 21 (22)
T 3ktp_B 15 PWKGLQN 21 (26)
T ss_pred ccccccc
Confidence 6777654
No 8
>2quo_A Heat-labIle enterotoxin B chain; beta sandwich, claudin-4 binding domain, therapeutic agent; 1.75A {Clostridium perfringens}
Probab=7.10 E-value=1.2e+02 Score=19.14 Aligned_cols=12 Identities=33% Similarity=1.104 Sum_probs=8.7
Q ss_pred eeeecCCCCCCC
Q 038873 3 GVYEWSGNNPLP 14 (86)
Q Consensus 3 G~y~W~g~~~iP 14 (86)
++|+|+..|+-|
T Consensus 29 nlydwrssnsyp 40 (126)
T 2quo_A 29 NLYDWRSSNSYP 40 (126)
T ss_dssp CEEEEECSSCBC
T ss_pred ceeeccccCCCc
Confidence 468888777766
No 9
>2kyg_C Protein CBFA2T1; protein/protein, homodimer bound to monomer, protein binding; NMR {Homo sapiens}
Probab=7.03 E-value=2e+02 Score=14.91 Aligned_cols=11 Identities=45% Similarity=0.957 Sum_probs=6.9
Q ss_pred CCCCCCCchhh
Q 038873 8 SGNNPLPPEIW 18 (86)
Q Consensus 8 ~g~~~iPpEl~ 18 (86)
+|...+|.|+|
T Consensus 7 ~gtGYVp~EiW 17 (38)
T 2kyg_C 7 SASGYVPEEIW 17 (38)
T ss_dssp CCCSSCCSHHH
T ss_pred CCCCCCcHHHH
Confidence 35556777766
No 10
>2zk9_X Protein-glutaminase; deamidation glutaminase, hydrolase; 1.15A {Chryseobacterium proteolyticum} PDB: 2ksv_A 2z8t_X
Probab=5.38 E-value=2.9e+02 Score=19.07 Aligned_cols=37 Identities=11% Similarity=0.077 Sum_probs=25.1
Q ss_pred ceeeecCCCCCC-CchhhhcCCCCCCCcCcchhhhhhhHHHHH
Q 038873 2 LGVYEWSGNNPL-PPEIWLLPYFLPFHPGRMWCHCRMVYLPMS 43 (86)
Q Consensus 2 ~G~y~W~g~~~i-PpEl~llP~~~P~~~~~~~~~~R~~~~Pm~ 43 (86)
|.++.-.++-.+ +.| | -++|..-+--|++|.+++-..
T Consensus 15 f~~i~n~~~~~~~a~~----p-dI~f~YpddGCyARAHlm~~~ 52 (185)
T 2zk9_X 15 FNQIKNESCGTSTASS----P-CITFRYPVDGCYARAHKMRQI 52 (185)
T ss_dssp HHHHHTTBTTCTTCCS----S-CBCTTCTTSCHHHHHHHHHHH
T ss_pred HHHHhhccccccccCC----C-CcccccCcccHHHHHHHHHHH
Confidence 334444454443 545 3 488888899999999987766
Done!