BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038876
(127 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 8 LPHGFQFRPSDEELIEHYLKKKDSGIFIPLAEYFIRDCNLYQEKPSEIWDSHGGPFLNAD 67
LP GF+F P+D+EL+EHYL +K +G +P+ I + +LY+ P WD A
Sbjct: 15 LPPGFRFHPTDDELVEHYLCRKAAGQRLPVP--IIAEVDLYKFDP---WDLPERALFGAR 69
Query: 68 EDLYFFTHLKKKFSKGSRIDRKVGSSGGTWQGEDAGKDIV 107
E YFFT +K+ GSR +R G+ G W+ A K +
Sbjct: 70 E-WYFFTPRDRKYPNGSRPNRAAGN--GYWKATGADKPVA 106
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 12/110 (10%)
Query: 1 MQEHRPF----LPHGFQFRPSDEELIEHYLKKKDSGIFIPLAEYFIRDCNLYQEKPSEIW 56
+QE P LP GF+F P+DEEL+ YL +K +G L I + +LY+ P +
Sbjct: 9 IQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQ--LIAEIDLYKFDPWVLP 66
Query: 57 DSHGGPFLNADEDLYFFTHLKKKFSKGSRIDRKVGSSGGTWQGEDAGKDI 106
+ L +++ YFF+ +K+ GSR +R GS G W+ K I
Sbjct: 67 NKA----LFGEKEWYFFSPRDRKYPNGSRPNRVAGS--GYWKATGTDKII 110
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 12/110 (10%)
Query: 1 MQEHRPF----LPHGFQFRPSDEELIEHYLKKKDSGIFIPLAEYFIRDCNLYQEKPSEIW 56
+QE P LP GF+F P+DEEL+ YL +K +G L I + +LY+ P +
Sbjct: 6 IQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQ--LIAEIDLYKFDPWVLP 63
Query: 57 DSHGGPFLNADEDLYFFTHLKKKFSKGSRIDRKVGSSGGTWQGEDAGKDI 106
+ L +++ YFF+ +K+ GSR +R GS G W+ K I
Sbjct: 64 NKA----LFGEKEWYFFSPRDRKYPNGSRPNRVAGS--GYWKATGTDKII 107
>pdb|2GJT|A Chain A, Crystal Structure Of The Human Receptor Phosphatase Ptpro
pdb|2GJT|B Chain B, Crystal Structure Of The Human Receptor Phosphatase Ptpro
Length = 295
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 56 WDSHGGPFLNADEDLYFFTHLKKKFSKGSRIDRKVGSSGGT 96
W HG P NA E + F H+ ++ + S+ + S G
Sbjct: 187 WPDHGVPTANAAESILQFVHMVRQQATKSKGPMIIHCSAGV 227
>pdb|2G59|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase From Homo Sapiens
pdb|2G59|B Chain B, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase From Homo Sapiens
Length = 297
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 56 WDSHGGPFLNADEDLYFFTHLKKKFSKGSRIDRKVGSSGGT 96
W HG P NA E + F H+ ++ + S+ + S G
Sbjct: 189 WPDHGVPTANAAESILQFVHMVRQQATKSKGPMIIHCSAGV 229
>pdb|2SPC|A Chain A, Crystal Structure Of The Repetitive Segments Of Spectrin
pdb|2SPC|B Chain B, Crystal Structure Of The Repetitive Segments Of Spectrin
Length = 107
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
Query: 39 EYFIRDCNLYQEKPSEIWDSHGGPFLNADED 69
+ ++RDC L +E W S FLNAD+D
Sbjct: 6 QLYMRDCEL-----AESWMSAREAFLNADDD 31
>pdb|4FO0|A Chain A, Human Actin-Related Protein Arp8 In Its Atp-Bound State
Length = 593
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 10 HGFQFRPSDEELIEHYLKKKDSGIFIPLAEYFIRDCNLYQEKPSEIWD-SHGGPFLNADE 68
H FQ R D + + + D + P+A ++ + +K + + S G P DE
Sbjct: 332 HEFQIRHPDSPALLYQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQGDPEDPHDE 391
Query: 69 DLYFFTHLKKKFSKGSRIDRKVGSSGGTWQGEDAGK 104
T K++ S + DRK S ++G+ G+
Sbjct: 392 HYLLATQSKQEQSAKATADRKSASKPIGFEGDLRGQ 427
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.142 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,269,513
Number of Sequences: 62578
Number of extensions: 184323
Number of successful extensions: 282
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 269
Number of HSP's gapped (non-prelim): 14
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)