Query 038876
Match_columns 127
No_of_seqs 116 out of 809
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 06:24:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038876.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038876hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 1.4E-44 4.8E-49 265.1 10.4 114 3-126 10-123 (174)
2 1ut7_A No apical meristem prot 100.0 8E-44 2.7E-48 260.6 10.5 112 5-126 14-125 (171)
3 3nr5_A MAF1, repressor of RNA 67.5 1.9 6.6E-05 30.6 1.3 15 41-55 118-132 (164)
4 4dox_A Coat protein; all helix 54.3 7.1 0.00024 29.1 2.3 26 5-30 152-177 (226)
5 1ldd_A APC2WHB, anaphase promo 53.2 6.8 0.00023 24.1 1.8 28 8-36 36-64 (74)
6 1cmb_A Met APO-repressor; DNA- 52.4 14 0.00049 23.6 3.2 38 15-58 50-87 (104)
7 3alz_B CDW150; viral protein-r 40.1 4.7 0.00016 27.7 -0.5 49 27-77 75-124 (149)
8 2ehh_A DHDPS, dihydrodipicolin 30.6 20 0.00067 27.0 1.5 28 8-37 102-129 (294)
9 3cpr_A Dihydrodipicolinate syn 30.3 20 0.00068 27.2 1.5 29 7-37 117-145 (304)
10 2ojp_A DHDPS, dihydrodipicolin 30.3 20 0.00069 26.9 1.5 28 8-37 103-130 (292)
11 1f6k_A N-acetylneuraminate lya 30.2 20 0.00069 26.9 1.5 19 7-26 105-123 (293)
12 2yxg_A DHDPS, dihydrodipicolin 29.5 21 0.00072 26.8 1.5 18 7-25 101-118 (289)
13 2nuw_A 2-keto-3-deoxygluconate 29.5 26 0.00089 26.3 2.0 18 7-25 97-115 (288)
14 2wkj_A N-acetylneuraminate lya 28.8 22 0.00075 26.9 1.5 18 7-25 112-129 (303)
15 3b4u_A Dihydrodipicolinate syn 28.7 27 0.00093 26.2 2.0 18 7-25 104-122 (294)
16 2rfg_A Dihydrodipicolinate syn 28.7 25 0.00084 26.6 1.8 18 7-25 101-118 (297)
17 2vc6_A MOSA, dihydrodipicolina 28.6 22 0.00076 26.7 1.5 17 8-25 102-118 (292)
18 3d0c_A Dihydrodipicolinate syn 28.5 28 0.00096 26.5 2.1 29 7-37 112-140 (314)
19 1o5k_A DHDPS, dihydrodipicolin 27.9 23 0.0008 26.8 1.5 29 7-37 113-141 (306)
20 2r91_A 2-keto-3-deoxy-(6-phosp 27.3 29 0.001 25.9 2.0 19 7-26 96-115 (286)
21 3e96_A Dihydrodipicolinate syn 27.2 30 0.001 26.3 2.1 29 7-37 112-140 (316)
22 2v9d_A YAGE; dihydrodipicolini 27.1 25 0.00084 27.3 1.5 29 7-37 132-160 (343)
23 3fkr_A L-2-keto-3-deoxyarabona 26.9 30 0.001 26.2 2.0 31 6-37 108-140 (309)
24 3si9_A DHDPS, dihydrodipicolin 26.7 25 0.00086 26.8 1.5 29 7-37 123-151 (315)
25 2r8w_A AGR_C_1641P; APC7498, d 26.5 31 0.0011 26.5 2.0 18 7-25 135-152 (332)
26 1xky_A Dihydrodipicolinate syn 26.3 26 0.00088 26.5 1.5 29 7-37 113-141 (301)
27 3na8_A Putative dihydrodipicol 25.4 34 0.0012 26.1 2.0 29 7-37 125-153 (315)
28 1w3i_A EDA, 2-keto-3-deoxy glu 25.4 29 0.001 26.0 1.7 17 8-25 98-115 (293)
29 3h5d_A DHDPS, dihydrodipicolin 24.9 28 0.00097 26.4 1.5 29 7-37 109-137 (311)
30 3a5f_A Dihydrodipicolinate syn 24.9 21 0.00071 26.8 0.8 17 8-25 103-119 (291)
31 3g21_A GAG polyprotein, capsid 24.6 35 0.0012 21.1 1.6 14 15-28 63-76 (77)
32 3qze_A DHDPS, dihydrodipicolin 22.7 33 0.0011 26.1 1.5 28 8-37 125-152 (314)
33 4dpp_A DHDPS 2, dihydrodipicol 21.4 33 0.0011 27.0 1.3 18 7-25 160-177 (360)
34 3pp4_P B-lymphocyte antigen CD 20.5 49 0.0017 16.0 1.3 12 46-57 1-12 (25)
35 4ds7_E Spindle POLE BODY compo 20.1 53 0.0018 18.8 1.7 15 18-33 35-49 (55)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1.4e-44 Score=265.05 Aligned_cols=114 Identities=32% Similarity=0.604 Sum_probs=99.3
Q ss_pred CCCCCCCCCeeECCChHHHHHHHHHhhhcCCCCCcccCccccccCCCCCCccccccCCCCccCCCCcEEEEeccccccCC
Q 038876 3 EHRPFLPHGFQFRPSDEELIEHYLKKKDSGIFIPLAEYFIRDCNLYQEKPSEIWDSHGGPFLNADEDLYFFTHLKKKFSK 82 (127)
Q Consensus 3 ~~~~~lp~G~rF~PTDeELi~~YL~~K~~g~~lp~~~~~I~~~Dvy~~~P~~L~~~~~~~~~~~~~~wyFF~~~~~k~~~ 82 (127)
+.++.|||||||+|||||||.|||++|+.|.++|. .+|+++|||++|||+||+... .++++|||||++.+|+++
T Consensus 10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~--~~I~evDvy~~~Pw~Lp~~~~----~g~~ewYFFs~r~~ky~~ 83 (174)
T 3ulx_A 10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPV--PIIAEVDLYKFDPWDLPERAL----FGAREWYFFTPRDRKYPN 83 (174)
T ss_dssp CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSS--SCCEECCGGGSCGGGSGGGCS----SCSSEEEEEEECCC----
T ss_pred ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCc--CeeeecccccCCchhhhhhhc----cCCceEEEEeccccccCC
Confidence 46679999999999999999999999999999998 899999999999999998632 246799999999999999
Q ss_pred CCcccceecCCCceEeeccCCceEEeCCCceEEEEEEEEEEEeC
Q 038876 83 GSRIDRKVGSSGGTWQGEDAGKDIVSGQSKIKIGSKKRFRYEKQ 126 (127)
Q Consensus 83 g~R~~R~~g~~~G~W~~~g~~~~I~~~~~~~~iG~kk~l~f~~~ 126 (127)
|.|++|++ ++|+||++|++++|.+. |.+||+||+|+||..
T Consensus 84 g~R~nR~t--~~G~WkatG~dk~I~~~--g~~vG~KktLvFy~g 123 (174)
T 3ulx_A 84 GSRPNRAA--GNGYWKATGADKPVAPR--GRTLGIKKALVFYAG 123 (174)
T ss_dssp -CCSCEEE--TTEEEEECSCCEEECCS--SSCCEEEEEEEEEES
T ss_pred CCCceeec--CCceEccCCCCcEEeeC--CcEEEEEEEEEEecC
Confidence 99999998 58999999999999864 689999999999963
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=8e-44 Score=260.56 Aligned_cols=112 Identities=30% Similarity=0.541 Sum_probs=96.3
Q ss_pred CCCCCCCeeECCChHHHHHHHHHhhhcCCCCCcccCccccccCCCCCCccccccCCCCccCCCCcEEEEeccccccCCCC
Q 038876 5 RPFLPHGFQFRPSDEELIEHYLKKKDSGIFIPLAEYFIRDCNLYQEKPSEIWDSHGGPFLNADEDLYFFTHLKKKFSKGS 84 (127)
Q Consensus 5 ~~~lp~G~rF~PTDeELi~~YL~~K~~g~~lp~~~~~I~~~Dvy~~~P~~L~~~~~~~~~~~~~~wyFF~~~~~k~~~g~ 84 (127)
.+.|||||||+|||||||.|||++|+.|.++|. .+|+++|||.+|||+||.... .++++|||||++.+++++|.
T Consensus 14 ~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~--~~I~e~Diy~~~Pw~Lp~~~~----~g~~ewyFFs~r~~k~~~g~ 87 (171)
T 1ut7_A 14 QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSL--QLIAEIDLYKFDPWVLPNKAL----FGEKEWYFFSPRDRKYPNGS 87 (171)
T ss_dssp SSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSS--CCSEECCGGGSCGGGHHHHSS----SCSSEEEEEEECCC------
T ss_pred ccCCCCcceeCCChHHHHHHHHHHHhcCCCCCC--CeEeecccccCChhHhhchhh----cCCccEEEEeccccccCCCC
Confidence 578999999999999999999999999999997 899999999999999998632 25789999999999999999
Q ss_pred cccceecCCCceEeeccCCceEEeCCCceEEEEEEEEEEEeC
Q 038876 85 RIDRKVGSSGGTWQGEDAGKDIVSGQSKIKIGSKKRFRYEKQ 126 (127)
Q Consensus 85 R~~R~~g~~~G~W~~~g~~~~I~~~~~~~~iG~kk~l~f~~~ 126 (127)
|++|++ ++|+||++|++++|.+. +.+||+||+|+||..
T Consensus 88 R~~R~t--~~G~Wk~tG~~k~I~~~--~~~vG~KktLvFy~g 125 (171)
T 1ut7_A 88 RPNRVA--GSGYWKATGTDKIISTE--GQRVGIKKALVFYIG 125 (171)
T ss_dssp -CCEEE--TTEEEEEEEEEEEEEET--TEEEEEEEEEEEEES
T ss_pred cccccC--CCCEEeccCCCceEEec--CcEEEEEEEEEEEcC
Confidence 999998 58999999999999975 589999999999973
No 3
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=67.49 E-value=1.9 Score=30.59 Aligned_cols=15 Identities=20% Similarity=0.627 Sum_probs=12.0
Q ss_pred ccccccCCCCCCccc
Q 038876 41 FIRDCNLYQEKPSEI 55 (127)
Q Consensus 41 ~I~~~Dvy~~~P~~L 55 (127)
-+.+||||++.|..-
T Consensus 118 ~l~dC~IYsY~Pd~~ 132 (164)
T 3nr5_A 118 CLAECDIYSYNPDLD 132 (164)
T ss_dssp CGGGCEEEEECCCGG
T ss_pred CccCCeEEEEcCCCC
Confidence 366899999999844
No 4
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=54.27 E-value=7.1 Score=29.07 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=18.0
Q ss_pred CCCCCCCeeECCChHHHHHHHHHhhh
Q 038876 5 RPFLPHGFQFRPSDEELIEHYLKKKD 30 (127)
Q Consensus 5 ~~~lp~G~rF~PTDeELi~~YL~~K~ 30 (127)
.+.-+-|..+.||++|+|.|=..+++
T Consensus 152 Al~P~~GLiR~PT~~E~iA~~t~K~i 177 (226)
T 4dox_A 152 AMQPPSGLTRSPTQEERIANATNKQV 177 (226)
T ss_dssp SCCCTTCCSSCCCHHHHHHHHTC---
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 34444589999999999998655544
No 5
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=53.18 E-value=6.8 Score=24.10 Aligned_cols=28 Identities=14% Similarity=0.277 Sum_probs=23.3
Q ss_pred CCCCeeECC-ChHHHHHHHHHhhhcCCCCC
Q 038876 8 LPHGFQFRP-SDEELIEHYLKKKDSGIFIP 36 (127)
Q Consensus 8 lp~G~rF~P-TDeELi~~YL~~K~~g~~lp 36 (127)
.|.|+.|.. |++||-. ||-.|+....|.
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 467889998 9999986 899999987664
No 6
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=52.42 E-value=14 Score=23.62 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=30.4
Q ss_pred CCChHHHHHHHHHhhhcCCCCCcccCccccccCCCCCCcccccc
Q 038876 15 RPSDEELIEHYLKKKDSGIFIPLAEYFIRDCNLYQEKPSEIWDS 58 (127)
Q Consensus 15 ~PTDeELi~~YL~~K~~g~~lp~~~~~I~~~Dvy~~~P~~L~~~ 58 (127)
+-|..||++.-...-..|+|||. +.|+-...|.++|..
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~------D~Dl~Kd~~d~iP~~ 87 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD------DADLRKERSDEIPEA 87 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC------GGGGBTTSCSCSCHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC------chhhhhcCCccchHH
Confidence 45778888876677778999998 678888888888864
No 7
>3alz_B CDW150; viral protein-receptor complex, six-bladed beta-propeller FO immunoglobulin fold, beta-sandwich, viral protein-membrane complex; HET: NAG; 4.51A {Saguinus oedipus}
Probab=40.14 E-value=4.7 Score=27.69 Aligned_cols=49 Identities=18% Similarity=0.017 Sum_probs=27.8
Q ss_pred HhhhcCCCCCcccCcccc-ccCCCCCCccccccCCCCccCCCCcEEEEeccc
Q 038876 27 KKKDSGIFIPLAEYFIRD-CNLYQEKPSEIWDSHGGPFLNADEDLYFFTHLK 77 (127)
Q Consensus 27 ~~K~~g~~lp~~~~~I~~-~Dvy~~~P~~L~~~~~~~~~~~~~~wyFF~~~~ 77 (127)
++||..-+++. .+.... -|=|.++|..|.-..-.+ ..+++-|||.|-.+
T Consensus 75 kKKIvSldl~e-g~~p~~LEdgY~F~leNlSL~Iles-rkedEGwYfmtlEe 124 (149)
T 3alz_B 75 ENKIVSLDPSE-AGPPRYLKDRYRFYLENLSLAIRES-TKKDEGWYFMTLEK 124 (149)
T ss_dssp CEEEEEECTTC-CSCCEECCSSEEEETTTTEEEETTC-CGGGCEEEEEEEEC
T ss_pred cceEEEecccc-CCCccccccccEEeeccceeehhhc-ccccCceEEEEEec
Confidence 44555555544 122222 277888888876543222 23567899998654
No 8
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=30.64 E-value=20 Score=27.00 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=17.7
Q ss_pred CCCCeeECCChHHHHHHHHHhhhcCCCCCc
Q 038876 8 LPHGFQFRPSDEELIEHYLKKKDSGIFIPL 37 (127)
Q Consensus 8 lp~G~rF~PTDeELi~~YL~~K~~g~~lp~ 37 (127)
+||- .|.||+++|+.||-. =+...++|.
T Consensus 102 ~~P~-y~~~s~~~l~~~f~~-va~a~~lPi 129 (294)
T 2ehh_A 102 VVPY-YNKPTQRGLYEHFKT-VAQEVDIPI 129 (294)
T ss_dssp ECCC-SSCCCHHHHHHHHHH-HHHHCCSCE
T ss_pred CCCC-CCCCCHHHHHHHHHH-HHHhcCCCE
Confidence 4554 478999999998732 222234665
No 9
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=30.32 E-value=20 Score=27.17 Aligned_cols=29 Identities=21% Similarity=0.449 Sum_probs=18.4
Q ss_pred CCCCCeeECCChHHHHHHHHHhhhcCCCCCc
Q 038876 7 FLPHGFQFRPSDEELIEHYLKKKDSGIFIPL 37 (127)
Q Consensus 7 ~lp~G~rF~PTDeELi~~YL~~K~~g~~lp~ 37 (127)
-+|| |.+.||+++|+.||-. =+...++|.
T Consensus 117 v~~P-~y~~~~~~~l~~~f~~-ia~a~~lPi 145 (304)
T 3cpr_A 117 VVTP-YYSKPSQEGLLAHFGA-IAAATEVPI 145 (304)
T ss_dssp EECC-CSSCCCHHHHHHHHHH-HHHHCCSCE
T ss_pred ECCC-CCCCCCHHHHHHHHHH-HHHhcCCCE
Confidence 3566 4488999999998732 222235665
No 10
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=30.27 E-value=20 Score=26.91 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=17.8
Q ss_pred CCCCeeECCChHHHHHHHHHhhhcCCCCCc
Q 038876 8 LPHGFQFRPSDEELIEHYLKKKDSGIFIPL 37 (127)
Q Consensus 8 lp~G~rF~PTDeELi~~YL~~K~~g~~lp~ 37 (127)
+||- .|.||+++|+.||- .=+...++|.
T Consensus 103 ~~P~-y~~~s~~~l~~~f~-~ia~a~~lPi 130 (292)
T 2ojp_A 103 VTPY-YNRPSQEGLYQHFK-AIAEHTDLPQ 130 (292)
T ss_dssp ECCC-SSCCCHHHHHHHHH-HHHTTCSSCE
T ss_pred CCCC-CCCCCHHHHHHHHH-HHHHhcCCCE
Confidence 4554 48899999999872 2222235665
No 11
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=30.17 E-value=20 Score=26.91 Aligned_cols=19 Identities=16% Similarity=-0.013 Sum_probs=14.4
Q ss_pred CCCCCeeECCChHHHHHHHH
Q 038876 7 FLPHGFQFRPSDEELIEHYL 26 (127)
Q Consensus 7 ~lp~G~rF~PTDeELi~~YL 26 (127)
-+||- .|.||+++|+.||-
T Consensus 105 v~~P~-y~~~~~~~l~~~f~ 123 (293)
T 1f6k_A 105 AVTPF-YYKFSFPEIKHYYD 123 (293)
T ss_dssp EECCC-SSCCCHHHHHHHHH
T ss_pred ECCCC-CCCCCHHHHHHHHH
Confidence 34564 48899999999873
No 12
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=29.51 E-value=21 Score=26.75 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=14.0
Q ss_pred CCCCCeeECCChHHHHHHH
Q 038876 7 FLPHGFQFRPSDEELIEHY 25 (127)
Q Consensus 7 ~lp~G~rF~PTDeELi~~Y 25 (127)
-+||- .+.||+++|+.||
T Consensus 101 v~~P~-y~~~s~~~l~~~f 118 (289)
T 2yxg_A 101 SITPY-YNKPTQEGLRKHF 118 (289)
T ss_dssp EECCC-SSCCCHHHHHHHH
T ss_pred ECCCC-CCCCCHHHHHHHH
Confidence 34564 4789999999987
No 13
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=29.47 E-value=26 Score=26.25 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=13.9
Q ss_pred CCCCCeeEC-CChHHHHHHH
Q 038876 7 FLPHGFQFR-PSDEELIEHY 25 (127)
Q Consensus 7 ~lp~G~rF~-PTDeELi~~Y 25 (127)
-+||-| |. ||+++|+.||
T Consensus 97 v~~P~y-~~~~s~~~l~~~f 115 (288)
T 2nuw_A 97 SHSPYY-FPRLPEKFLAKYY 115 (288)
T ss_dssp ECCCCS-SCSCCHHHHHHHH
T ss_pred EcCCcC-CCCCCHHHHHHHH
Confidence 356644 77 9999999987
No 14
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=28.83 E-value=22 Score=26.92 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=14.1
Q ss_pred CCCCCeeECCChHHHHHHH
Q 038876 7 FLPHGFQFRPSDEELIEHY 25 (127)
Q Consensus 7 ~lp~G~rF~PTDeELi~~Y 25 (127)
-+||-| |.||+++|+.||
T Consensus 112 v~~P~y-~~~s~~~l~~~f 129 (303)
T 2wkj_A 112 AVTPFY-YPFSFEEHCDHY 129 (303)
T ss_dssp EECCCS-SCCCHHHHHHHH
T ss_pred ecCCCC-CCCCHHHHHHHH
Confidence 345644 889999999987
No 15
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=28.69 E-value=27 Score=26.22 Aligned_cols=18 Identities=28% Similarity=0.719 Sum_probs=13.9
Q ss_pred CCCCCeeEC-CChHHHHHHH
Q 038876 7 FLPHGFQFR-PSDEELIEHY 25 (127)
Q Consensus 7 ~lp~G~rF~-PTDeELi~~Y 25 (127)
-+||-| |. ||+++|+.||
T Consensus 104 v~~P~y-~~~~s~~~l~~~f 122 (294)
T 3b4u_A 104 LAPPSY-FKNVSDDGLFAWF 122 (294)
T ss_dssp ECCCCS-SCSCCHHHHHHHH
T ss_pred EcCCcC-CCCCCHHHHHHHH
Confidence 355544 77 9999999987
No 16
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=28.67 E-value=25 Score=26.56 Aligned_cols=18 Identities=33% Similarity=0.597 Sum_probs=14.1
Q ss_pred CCCCCeeECCChHHHHHHH
Q 038876 7 FLPHGFQFRPSDEELIEHY 25 (127)
Q Consensus 7 ~lp~G~rF~PTDeELi~~Y 25 (127)
-+||-| |.||+++|+.||
T Consensus 101 v~~P~y-~~~s~~~l~~~f 118 (297)
T 2rfg_A 101 CVAGYY-NRPSQEGLYQHF 118 (297)
T ss_dssp ECCCTT-TCCCHHHHHHHH
T ss_pred EcCCCC-CCCCHHHHHHHH
Confidence 356644 789999999987
No 17
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=28.64 E-value=22 Score=26.66 Aligned_cols=17 Identities=18% Similarity=0.624 Sum_probs=13.7
Q ss_pred CCCCeeECCChHHHHHHH
Q 038876 8 LPHGFQFRPSDEELIEHY 25 (127)
Q Consensus 8 lp~G~rF~PTDeELi~~Y 25 (127)
+|| |.|.||+++|+.||
T Consensus 102 ~~P-~y~~~s~~~l~~~f 118 (292)
T 2vc6_A 102 VSP-YYNKPTQEGIYQHF 118 (292)
T ss_dssp ECC-CSSCCCHHHHHHHH
T ss_pred cCC-CCCCCCHHHHHHHH
Confidence 455 44889999999987
No 18
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=28.46 E-value=28 Score=26.48 Aligned_cols=29 Identities=14% Similarity=0.007 Sum_probs=18.4
Q ss_pred CCCCCeeECCChHHHHHHHHHhhhcCCCCCc
Q 038876 7 FLPHGFQFRPSDEELIEHYLKKKDSGIFIPL 37 (127)
Q Consensus 7 ~lp~G~rF~PTDeELi~~YL~~K~~g~~lp~ 37 (127)
-+||- .|.||+++|+.||- .=+...++|.
T Consensus 112 v~~P~-y~~~s~~~l~~~f~-~va~a~~lPi 140 (314)
T 3d0c_A 112 IHQPV-HPYITDAGAVEYYR-NIIEALDAPS 140 (314)
T ss_dssp ECCCC-CSCCCHHHHHHHHH-HHHHHSSSCE
T ss_pred ECCCC-CCCCCHHHHHHHHH-HHHHhCCCCE
Confidence 35664 48899999999873 2222235665
No 19
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=27.89 E-value=23 Score=26.81 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=18.4
Q ss_pred CCCCCeeECCChHHHHHHHHHhhhcCCCCCc
Q 038876 7 FLPHGFQFRPSDEELIEHYLKKKDSGIFIPL 37 (127)
Q Consensus 7 ~lp~G~rF~PTDeELi~~YL~~K~~g~~lp~ 37 (127)
-+||- .|.||+++|+.||- .=+...++|.
T Consensus 113 v~~P~-y~~~s~~~l~~~f~-~va~a~~lPi 141 (306)
T 1o5k_A 113 VVTPY-YNKPTQEGLYQHYK-YISERTDLGI 141 (306)
T ss_dssp EECCC-SSCCCHHHHHHHHH-HHHTTCSSCE
T ss_pred ECCCC-CCCCCHHHHHHHHH-HHHHhCCCCE
Confidence 34564 47899999999873 2222335665
No 20
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=27.26 E-value=29 Score=25.89 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=14.4
Q ss_pred CCCCCeeEC-CChHHHHHHHH
Q 038876 7 FLPHGFQFR-PSDEELIEHYL 26 (127)
Q Consensus 7 ~lp~G~rF~-PTDeELi~~YL 26 (127)
-+||-| |. ||+++|+.||-
T Consensus 96 v~~P~y-~~~~s~~~l~~~f~ 115 (286)
T 2r91_A 96 SLPPYY-FPRLSERQIAKYFR 115 (286)
T ss_dssp ECCSCS-STTCCHHHHHHHHH
T ss_pred EcCCcC-CCCCCHHHHHHHHH
Confidence 356644 77 99999999873
No 21
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=27.18 E-value=30 Score=26.27 Aligned_cols=29 Identities=3% Similarity=-0.168 Sum_probs=18.5
Q ss_pred CCCCCeeECCChHHHHHHHHHhhhcCCCCCc
Q 038876 7 FLPHGFQFRPSDEELIEHYLKKKDSGIFIPL 37 (127)
Q Consensus 7 ~lp~G~rF~PTDeELi~~YL~~K~~g~~lp~ 37 (127)
-+||-| +.||+++|+.||- .=+...++|.
T Consensus 112 v~~P~y-~~~s~~~l~~~f~-~va~a~~lPi 140 (316)
T 3e96_A 112 IHMPIH-PYVTAGGVYAYFR-DIIEALDFPS 140 (316)
T ss_dssp ECCCCC-SCCCHHHHHHHHH-HHHHHHTSCE
T ss_pred EcCCCC-CCCCHHHHHHHHH-HHHHhCCCCE
Confidence 356655 8899999999762 2222235665
No 22
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=27.09 E-value=25 Score=27.26 Aligned_cols=29 Identities=14% Similarity=0.395 Sum_probs=18.5
Q ss_pred CCCCCeeECCChHHHHHHHHHhhhcCCCCCc
Q 038876 7 FLPHGFQFRPSDEELIEHYLKKKDSGIFIPL 37 (127)
Q Consensus 7 ~lp~G~rF~PTDeELi~~YL~~K~~g~~lp~ 37 (127)
-+||-| |.||+++|+.||- .=+...++|.
T Consensus 132 v~~P~Y-~~~s~~~l~~~f~-~VA~a~~lPi 160 (343)
T 2v9d_A 132 VINPYY-WKVSEANLIRYFE-QVADSVTLPV 160 (343)
T ss_dssp EECCSS-SCCCHHHHHHHHH-HHHHTCSSCE
T ss_pred ECCCCC-CCCCHHHHHHHHH-HHHHhcCCCE
Confidence 345644 8899999999873 2222335665
No 23
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=26.86 E-value=30 Score=26.23 Aligned_cols=31 Identities=26% Similarity=0.503 Sum_probs=19.6
Q ss_pred CCCCCCee--ECCChHHHHHHHHHhhhcCCCCCc
Q 038876 6 PFLPHGFQ--FRPSDEELIEHYLKKKDSGIFIPL 37 (127)
Q Consensus 6 ~~lp~G~r--F~PTDeELi~~YL~~K~~g~~lp~ 37 (127)
+-+||-|- |.||+++|+.||- .=+...++|.
T Consensus 108 lv~~Pyy~~~~~~s~~~l~~~f~-~va~a~~lPi 140 (309)
T 3fkr_A 108 MAMPPYHGATFRVPEAQIFEFYA-RVSDAIAIPI 140 (309)
T ss_dssp EECCSCBTTTBCCCHHHHHHHHH-HHHHHCSSCE
T ss_pred EEcCCCCccCCCCCHHHHHHHHH-HHHHhcCCCE
Confidence 34667442 8999999999763 2222345665
No 24
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=26.74 E-value=25 Score=26.84 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=18.3
Q ss_pred CCCCCeeECCChHHHHHHHHHhhhcCCCCCc
Q 038876 7 FLPHGFQFRPSDEELIEHYLKKKDSGIFIPL 37 (127)
Q Consensus 7 ~lp~G~rF~PTDeELi~~YL~~K~~g~~lp~ 37 (127)
-+||- .|.||+++|+.||- .=+...++|.
T Consensus 123 v~~P~-y~~~~~~~l~~~f~-~va~a~~lPi 151 (315)
T 3si9_A 123 VVTPY-YNRPNQRGLYTHFS-SIAKAISIPI 151 (315)
T ss_dssp EECCC-SSCCCHHHHHHHHH-HHHHHCSSCE
T ss_pred ECCCC-CCCCCHHHHHHHHH-HHHHcCCCCE
Confidence 35564 47899999999772 2222235665
No 25
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=26.50 E-value=31 Score=26.50 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=14.2
Q ss_pred CCCCCeeECCChHHHHHHH
Q 038876 7 FLPHGFQFRPSDEELIEHY 25 (127)
Q Consensus 7 ~lp~G~rF~PTDeELi~~Y 25 (127)
-+||-| +.||+++|+.||
T Consensus 135 v~~P~Y-~~~s~~~l~~~f 152 (332)
T 2r8w_A 135 LAPVSY-TPLTQEEAYHHF 152 (332)
T ss_dssp ECCCCS-SCCCHHHHHHHH
T ss_pred ECCCCC-CCCCHHHHHHHH
Confidence 356644 789999999987
No 26
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=26.32 E-value=26 Score=26.48 Aligned_cols=29 Identities=17% Similarity=0.437 Sum_probs=18.4
Q ss_pred CCCCCeeECCChHHHHHHHHHhhhcCCCCCc
Q 038876 7 FLPHGFQFRPSDEELIEHYLKKKDSGIFIPL 37 (127)
Q Consensus 7 ~lp~G~rF~PTDeELi~~YL~~K~~g~~lp~ 37 (127)
-+|| |.|.||+++|+.||- .=+...++|.
T Consensus 113 v~~P-~y~~~s~~~l~~~f~-~va~a~~lPi 141 (301)
T 1xky_A 113 LVAP-YYNKPSQEGMYQHFK-AIAESTPLPV 141 (301)
T ss_dssp EECC-CSSCCCHHHHHHHHH-HHHHTCSSCE
T ss_pred EcCC-CCCCCCHHHHHHHHH-HHHHhcCCCE
Confidence 3456 448899999999872 2222335665
No 27
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=25.40 E-value=34 Score=26.07 Aligned_cols=29 Identities=24% Similarity=0.580 Sum_probs=18.1
Q ss_pred CCCCCeeECCChHHHHHHHHHhhhcCCCCCc
Q 038876 7 FLPHGFQFRPSDEELIEHYLKKKDSGIFIPL 37 (127)
Q Consensus 7 ~lp~G~rF~PTDeELi~~YL~~K~~g~~lp~ 37 (127)
-+||- .|.||+++|+.|| +.=+..-++|.
T Consensus 125 v~~P~-y~~~s~~~l~~~f-~~va~a~~lPi 153 (315)
T 3na8_A 125 VLPIS-YWKLNEAEVFQHY-RAVGEAIGVPV 153 (315)
T ss_dssp ECCCC-SSCCCHHHHHHHH-HHHHHHCSSCE
T ss_pred ECCCC-CCCCCHHHHHHHH-HHHHHhCCCcE
Confidence 34554 4789999999976 32222335665
No 28
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=25.38 E-value=29 Score=26.02 Aligned_cols=17 Identities=12% Similarity=0.389 Sum_probs=13.4
Q ss_pred CCCCeeEC-CChHHHHHHH
Q 038876 8 LPHGFQFR-PSDEELIEHY 25 (127)
Q Consensus 8 lp~G~rF~-PTDeELi~~Y 25 (127)
+||-| |. ||+++|+.||
T Consensus 98 ~~P~y-~~~~s~~~l~~~f 115 (293)
T 1w3i_A 98 YAPYY-YPRMSEKHLVKYF 115 (293)
T ss_dssp ECCCS-CSSCCHHHHHHHH
T ss_pred cCCCC-CCCCCHHHHHHHH
Confidence 45544 77 9999999987
No 29
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=24.91 E-value=28 Score=26.45 Aligned_cols=29 Identities=21% Similarity=0.430 Sum_probs=18.7
Q ss_pred CCCCCeeECCChHHHHHHHHHhhhcCCCCCc
Q 038876 7 FLPHGFQFRPSDEELIEHYLKKKDSGIFIPL 37 (127)
Q Consensus 7 ~lp~G~rF~PTDeELi~~YL~~K~~g~~lp~ 37 (127)
-+|| +.|.||+++|+.|| +.=+...++|.
T Consensus 109 v~~P-~y~~~s~~~l~~~f-~~va~a~~lPi 137 (311)
T 3h5d_A 109 AIVP-YYNKPSQEGMYQHF-KAIADASDLPI 137 (311)
T ss_dssp EECC-CSSCCCHHHHHHHH-HHHHHSCSSCE
T ss_pred EcCC-CCCCCCHHHHHHHH-HHHHHhCCCCE
Confidence 3455 44789999999876 33333345665
No 30
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=24.90 E-value=21 Score=26.80 Aligned_cols=17 Identities=12% Similarity=0.354 Sum_probs=13.5
Q ss_pred CCCCeeECCChHHHHHHH
Q 038876 8 LPHGFQFRPSDEELIEHY 25 (127)
Q Consensus 8 lp~G~rF~PTDeELi~~Y 25 (127)
+||- .+.||+++|+.||
T Consensus 103 ~~P~-y~~~s~~~l~~~f 119 (291)
T 3a5f_A 103 ITPY-YNKTTQKGLVKHF 119 (291)
T ss_dssp ECCC-SSCCCHHHHHHHC
T ss_pred cCCC-CCCCCHHHHHHHH
Confidence 4554 4789999999987
No 31
>3g21_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 0.90A {Rous sarcoma virus} PDB: 3g1i_A 3g28_A 3g29_A 3g26_A 3g0v_A
Probab=24.62 E-value=35 Score=21.07 Aligned_cols=14 Identities=21% Similarity=0.320 Sum_probs=10.5
Q ss_pred CCChHHHHHHHHHh
Q 038876 15 RPSDEELIEHYLKK 28 (127)
Q Consensus 15 ~PTDeELi~~YL~~ 28 (127)
.|+.+|||.+-|.+
T Consensus 63 ~~~~~e~ik~~~~~ 76 (77)
T 3g21_A 63 LTTPGEIIKYVLDR 76 (77)
T ss_dssp CCSHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHcc
Confidence 47889999876643
No 32
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=22.66 E-value=33 Score=26.08 Aligned_cols=28 Identities=18% Similarity=0.465 Sum_probs=17.6
Q ss_pred CCCCeeECCChHHHHHHHHHhhhcCCCCCc
Q 038876 8 LPHGFQFRPSDEELIEHYLKKKDSGIFIPL 37 (127)
Q Consensus 8 lp~G~rF~PTDeELi~~YL~~K~~g~~lp~ 37 (127)
+|| |.|.||+++|+.||- .=+...++|.
T Consensus 125 ~~P-~y~~~s~~~l~~~f~-~va~a~~lPi 152 (314)
T 3qze_A 125 VTP-YYNKPTQEGMYQHFR-HIAEAVAIPQ 152 (314)
T ss_dssp ECC-CSSCCCHHHHHHHHH-HHHHHSCSCE
T ss_pred cCC-CCCCCCHHHHHHHHH-HHHHhcCCCE
Confidence 455 447899999999763 2222235665
No 33
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=21.44 E-value=33 Score=26.99 Aligned_cols=18 Identities=28% Similarity=0.408 Sum_probs=14.7
Q ss_pred CCCCCeeECCChHHHHHHH
Q 038876 7 FLPHGFQFRPSDEELIEHY 25 (127)
Q Consensus 7 ~lp~G~rF~PTDeELi~~Y 25 (127)
.+|| |.+.||+++|+.||
T Consensus 160 vv~P-yY~k~sq~gl~~hf 177 (360)
T 4dpp_A 160 HINP-YYGKTSIEGLIAHF 177 (360)
T ss_dssp EECC-CSSCCCHHHHHHHH
T ss_pred EcCC-CCCCCCHHHHHHHH
Confidence 4566 55889999999987
No 34
>3pp4_P B-lymphocyte antigen CD20; antibody FAB fragment IG-domain, cyclic peptide, antib antigen, immune system; 1.60A {Homo sapiens} PDB: 3bky_P 2osl_P
Probab=20.53 E-value=49 Score=16.00 Aligned_cols=12 Identities=25% Similarity=0.548 Sum_probs=8.3
Q ss_pred cCCCCCCccccc
Q 038876 46 NLYQEKPSEIWD 57 (127)
Q Consensus 46 Dvy~~~P~~L~~ 57 (127)
|||.++|..-.+
T Consensus 1 nIynCE~a~pse 12 (25)
T 3pp4_P 1 NIYNCEPANPSE 12 (26)
T ss_dssp -CCCCSCSSGGG
T ss_pred CccccccCCccc
Confidence 689999966554
No 35
>4ds7_E Spindle POLE BODY component 110; protein binding, metal binding, structura; 2.15A {Saccharomyces cerevisiae S288C}
Probab=20.11 E-value=53 Score=18.83 Aligned_cols=15 Identities=13% Similarity=0.306 Sum_probs=8.2
Q ss_pred hHHHHHHHHHhhhcCC
Q 038876 18 DEELIEHYLKKKDSGI 33 (127)
Q Consensus 18 DeELi~~YL~~K~~g~ 33 (127)
|+.-| +||.+||...
T Consensus 35 d~qRi-~YLqrKia~~ 49 (55)
T 4ds7_E 35 DDNRL-RILRDRIESS 49 (55)
T ss_dssp HHHHH-HHHHHC----
T ss_pred hHHHH-HHHHHHHhcc
Confidence 55566 4899999854
Done!