Query 038877
Match_columns 298
No_of_seqs 165 out of 2532
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 04:10:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038877.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038877hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 5.9E-23 1.3E-27 198.7 16.3 263 3-280 89-367 (968)
2 PLN00113 leucine-rich repeat r 99.9 6E-23 1.3E-27 198.7 15.3 259 7-286 69-349 (968)
3 KOG4194 Membrane glycoprotein 99.9 3.4E-23 7.3E-28 177.6 3.5 266 5-281 147-428 (873)
4 KOG4194 Membrane glycoprotein 99.8 7.9E-22 1.7E-26 169.3 6.2 232 3-262 98-332 (873)
5 PLN03210 Resistant to P. syrin 99.8 1.5E-19 3.3E-24 176.2 17.7 126 8-137 590-716 (1153)
6 PLN03210 Resistant to P. syrin 99.8 1.2E-18 2.6E-23 170.0 16.2 260 5-286 609-910 (1153)
7 KOG0444 Cytoskeletal regulator 99.8 4.8E-21 1E-25 166.1 -0.5 261 3-291 99-384 (1255)
8 KOG4658 Apoptotic ATPase [Sign 99.8 9E-20 2E-24 170.4 7.8 275 1-293 517-794 (889)
9 KOG0444 Cytoskeletal regulator 99.8 7.7E-21 1.7E-25 164.8 -3.8 246 3-279 51-301 (1255)
10 KOG0472 Leucine-rich repeat pr 99.7 1.9E-19 4.1E-24 148.5 -0.6 109 1-111 200-308 (565)
11 KOG0472 Leucine-rich repeat pr 99.7 7.9E-21 1.7E-25 156.5 -10.4 244 2-280 63-308 (565)
12 KOG0617 Ras suppressor protein 99.7 1.1E-18 2.3E-23 128.4 -3.9 154 4-177 30-186 (264)
13 KOG0618 Serine/threonine phosp 99.6 9.8E-17 2.1E-21 144.8 0.3 252 8-281 220-488 (1081)
14 PRK15370 E3 ubiquitin-protein 99.6 4.4E-15 9.6E-20 137.2 10.2 239 8-281 179-427 (754)
15 KOG0618 Serine/threonine phosp 99.6 5.8E-17 1.3E-21 146.2 -2.2 273 4-290 42-472 (1081)
16 KOG4237 Extracellular matrix p 99.6 1.8E-16 4E-21 130.7 0.5 108 28-137 66-176 (498)
17 KOG0617 Ras suppressor protein 99.6 2.7E-17 5.9E-22 121.0 -3.9 134 1-138 50-186 (264)
18 PRK15387 E3 ubiquitin-protein 99.6 1.3E-14 2.8E-19 133.6 12.3 218 7-281 222-457 (788)
19 cd00116 LRR_RI Leucine-rich re 99.6 1E-15 2.2E-20 130.2 4.8 251 12-280 3-289 (319)
20 PRK15370 E3 ubiquitin-protein 99.6 2.4E-14 5.3E-19 132.3 10.9 161 29-227 178-338 (754)
21 cd00116 LRR_RI Leucine-rich re 99.5 2.5E-15 5.3E-20 127.9 3.9 258 4-279 20-317 (319)
22 PRK15387 E3 ubiquitin-protein 99.5 8.1E-14 1.8E-18 128.4 11.7 233 7-286 201-438 (788)
23 KOG1909 Ran GTPase-activating 99.5 1.9E-14 4.2E-19 117.1 4.1 241 24-281 25-310 (382)
24 KOG4237 Extracellular matrix p 99.5 5.1E-15 1.1E-19 122.3 0.0 239 8-257 68-357 (498)
25 PF14580 LRR_9: Leucine-rich r 99.4 4E-13 8.8E-18 102.3 4.9 142 16-173 6-149 (175)
26 KOG3207 Beta-tubulin folding c 99.3 3.7E-13 7.9E-18 112.8 2.5 212 49-279 117-336 (505)
27 KOG4341 F-box protein containi 99.3 1.3E-13 2.8E-18 114.8 -0.5 266 8-291 139-448 (483)
28 PF14580 LRR_9: Leucine-rich r 99.3 1.6E-12 3.4E-17 99.1 5.2 130 3-135 15-150 (175)
29 KOG4658 Apoptotic ATPase [Sign 99.2 8.6E-12 1.9E-16 117.4 5.6 281 5-289 543-849 (889)
30 KOG3207 Beta-tubulin folding c 99.2 2E-12 4.2E-17 108.5 -0.9 130 6-137 120-258 (505)
31 KOG1909 Ran GTPase-activating 99.2 7E-12 1.5E-16 102.4 2.0 239 3-259 26-310 (382)
32 KOG0532 Leucine-rich repeat (L 99.1 6.5E-12 1.4E-16 108.7 -2.3 173 6-200 97-270 (722)
33 KOG2982 Uncharacterized conser 99.0 4.9E-11 1.1E-15 95.7 0.7 211 31-263 47-266 (418)
34 KOG0532 Leucine-rich repeat (L 99.0 1.1E-11 2.5E-16 107.2 -3.8 213 12-256 55-270 (722)
35 COG4886 Leucine-rich repeat (L 99.0 3.7E-10 8E-15 99.0 5.0 105 27-135 114-219 (394)
36 KOG2120 SCF ubiquitin ligase, 99.0 1.3E-11 2.9E-16 98.9 -4.5 182 78-281 186-375 (419)
37 COG4886 Leucine-rich repeat (L 99.0 4.4E-10 9.5E-15 98.6 4.3 176 3-202 112-289 (394)
38 KOG1259 Nischarin, modulator o 98.9 2.2E-10 4.8E-15 92.2 -0.4 128 29-176 284-411 (490)
39 KOG1259 Nischarin, modulator o 98.9 5.6E-10 1.2E-14 89.9 0.8 198 4-228 211-413 (490)
40 KOG2120 SCF ubiquitin ligase, 98.8 1.6E-10 3.5E-15 92.8 -2.8 198 53-273 185-391 (419)
41 PF13855 LRR_8: Leucine rich r 98.8 4.2E-09 9.1E-14 66.2 3.8 59 29-88 1-60 (61)
42 COG5238 RNA1 Ran GTPase-activa 98.8 1.1E-08 2.3E-13 81.5 5.6 216 26-256 27-282 (388)
43 KOG4341 F-box protein containi 98.8 4.3E-10 9.4E-15 94.1 -2.7 252 4-277 161-460 (483)
44 PLN03150 hypothetical protein; 98.7 8.4E-08 1.8E-12 88.6 9.3 103 31-136 420-526 (623)
45 PF13855 LRR_8: Leucine rich r 98.6 3.3E-08 7.1E-13 62.1 3.6 57 7-63 1-59 (61)
46 KOG2982 Uncharacterized conser 98.6 1.9E-08 4.1E-13 81.1 2.5 226 11-254 49-287 (418)
47 KOG0531 Protein phosphatase 1, 98.6 5.4E-09 1.2E-13 92.1 -0.9 103 4-110 92-196 (414)
48 KOG1859 Leucine-rich repeat pr 98.6 3.4E-10 7.3E-15 101.0 -8.4 175 3-201 105-290 (1096)
49 KOG0531 Protein phosphatase 1, 98.5 5.7E-09 1.2E-13 91.9 -2.3 128 5-138 70-199 (414)
50 PLN03150 hypothetical protein; 98.5 3E-07 6.6E-12 84.9 8.2 82 79-176 420-502 (623)
51 KOG4579 Leucine-rich repeat (L 98.3 8.3E-08 1.8E-12 68.7 -1.3 107 11-119 31-141 (177)
52 KOG3665 ZYG-1-like serine/thre 98.2 2.9E-07 6.2E-12 85.2 1.1 107 53-176 122-232 (699)
53 KOG1644 U2-associated snRNP A' 98.2 2.6E-06 5.6E-11 65.2 5.5 125 10-137 22-152 (233)
54 KOG3665 ZYG-1-like serine/thre 98.2 7.4E-07 1.6E-11 82.5 3.1 129 7-137 122-262 (699)
55 KOG1859 Leucine-rich repeat pr 98.2 1.9E-08 4E-13 90.2 -7.6 127 6-137 163-291 (1096)
56 KOG1947 Leucine rich repeat pr 98.1 7.2E-07 1.6E-11 80.2 1.2 40 248-287 403-445 (482)
57 PF12799 LRR_4: Leucine Rich r 98.1 3.8E-06 8.2E-11 48.5 3.6 14 74-87 21-34 (44)
58 KOG1644 U2-associated snRNP A' 98.1 4.5E-06 9.7E-11 63.9 5.0 106 53-174 42-150 (233)
59 PF12799 LRR_4: Leucine Rich r 98.0 7E-06 1.5E-10 47.4 3.8 38 30-69 2-39 (44)
60 PRK15386 type III secretion pr 98.0 3.6E-05 7.8E-10 66.3 8.5 81 4-95 49-133 (426)
61 PRK15386 type III secretion pr 97.9 6.6E-05 1.4E-09 64.8 8.5 53 52-110 51-104 (426)
62 KOG1947 Leucine rich repeat pr 97.9 4.2E-06 9.1E-11 75.3 1.1 133 51-196 186-327 (482)
63 COG5238 RNA1 Ran GTPase-activa 97.9 1.8E-05 3.8E-10 63.6 4.1 240 6-262 29-318 (388)
64 KOG4579 Leucine-rich repeat (L 97.7 5.1E-06 1.1E-10 59.7 -0.9 89 5-95 51-141 (177)
65 KOG2739 Leucine-rich acidic nu 97.7 3E-05 6.6E-10 61.8 2.9 81 8-90 44-129 (260)
66 PF13306 LRR_5: Leucine rich r 97.6 0.00029 6.3E-09 51.2 6.9 117 3-127 8-128 (129)
67 KOG2123 Uncharacterized conser 97.5 7.5E-06 1.6E-10 65.8 -2.3 77 30-110 20-98 (388)
68 KOG2123 Uncharacterized conser 97.5 5.3E-06 1.2E-10 66.7 -4.0 98 6-106 18-123 (388)
69 KOG3864 Uncharacterized conser 97.4 1.9E-05 4E-10 60.6 -1.1 87 192-285 103-192 (221)
70 PF13306 LRR_5: Leucine rich r 96.8 0.0041 8.8E-08 45.1 6.1 102 26-134 9-112 (129)
71 KOG2739 Leucine-rich acidic nu 96.8 0.00056 1.2E-08 54.7 1.4 60 76-137 64-128 (260)
72 KOG3864 Uncharacterized conser 95.7 0.0029 6.2E-08 48.9 0.2 61 126-201 102-162 (221)
73 PF00560 LRR_1: Leucine Rich R 95.7 0.0054 1.2E-07 29.4 1.0 14 80-93 3-16 (22)
74 PF00560 LRR_1: Leucine Rich R 95.2 0.0079 1.7E-07 28.8 0.7 16 31-46 2-17 (22)
75 PF13504 LRR_7: Leucine rich r 94.5 0.027 5.9E-07 25.0 1.4 11 79-89 3-13 (17)
76 smart00367 LRR_CC Leucine-rich 93.3 0.048 1E-06 27.2 1.2 18 268-285 1-18 (26)
77 smart00367 LRR_CC Leucine-rich 92.3 0.097 2.1E-06 26.0 1.4 19 245-263 1-19 (26)
78 KOG4308 LRR-containing protein 91.8 0.0035 7.6E-08 56.0 -7.1 17 26-42 112-128 (478)
79 smart00370 LRR Leucine-rich re 91.7 0.16 3.5E-06 25.2 1.9 18 30-47 3-20 (26)
80 smart00369 LRR_TYP Leucine-ric 91.7 0.16 3.5E-06 25.2 1.9 18 30-47 3-20 (26)
81 KOG0473 Leucine-rich repeat pr 90.2 0.0086 1.9E-07 47.5 -5.4 84 26-111 39-122 (326)
82 KOG0473 Leucine-rich repeat pr 90.0 0.0075 1.6E-07 47.8 -5.9 87 2-90 37-124 (326)
83 KOG4308 LRR-containing protein 86.1 0.011 2.3E-07 53.1 -8.4 106 31-138 89-217 (478)
84 PF13516 LRR_6: Leucine Rich r 77.7 1.4 3.1E-05 21.1 1.1 14 29-42 2-15 (24)
85 smart00364 LRR_BAC Leucine-ric 74.8 2.2 4.8E-05 21.2 1.3 18 8-25 3-20 (26)
86 smart00365 LRR_SD22 Leucine-ri 74.5 2.9 6.3E-05 20.8 1.7 16 7-22 2-17 (26)
87 KOG3763 mRNA export factor TAP 72.1 1.6 3.4E-05 39.4 0.7 66 163-228 217-284 (585)
88 smart00368 LRR_RI Leucine rich 56.5 9.2 0.0002 19.2 1.5 14 29-42 2-15 (28)
89 KOG3763 mRNA export factor TAP 45.1 13 0.00028 33.8 1.6 63 26-90 215-283 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=5.9e-23 Score=198.75 Aligned_cols=263 Identities=19% Similarity=0.208 Sum_probs=127.4
Q ss_pred cccCCCccEEEeecCCCcC-CCC-C-CCCCcccEEEecCCccc-ccCchHHhcCCCccEEEccCCcCCc-cCCccccCcc
Q 038877 3 VEEWEGAKRISLMKTGIQS-PSE-I-PTCPRLVTFLLDGNWIE-EITDGFFRSMSSLRVLSLRRNLALS-KLPSGISNLV 77 (298)
Q Consensus 3 ~~~~~~L~~L~l~~~~~~~-~~~-~-~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~-~~p~~~~~l~ 77 (298)
+.++++|+.|++++|.+.+ +|. + ..+++|++|++++|.+. .+|. +.+++|++|++++| .+. .+|..++.++
T Consensus 89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n-~~~~~~p~~~~~l~ 164 (968)
T PLN00113 89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNN-MLSGEIPNDIGSFS 164 (968)
T ss_pred HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCC-cccccCChHHhcCC
Confidence 5567777777777777653 543 2 35666666666666554 2332 23455555555555 332 4454555555
Q ss_pred CCCeeeccCCccc-ccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcccccc--------ccccc
Q 038877 78 SLHHLDLSWTRIR-GLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQ--------EEGSV 148 (298)
Q Consensus 78 ~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--------~~~~~ 148 (298)
+|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|+.|++++|.+...... ...++
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 243 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence 5555555555443 44445555555555555555444444443 45555555555555544210000 00000
Q ss_pred cccC-chhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcc
Q 038877 149 LYDD-AEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLE 227 (298)
Q Consensus 149 ~~~~-~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 227 (298)
.... ....+..+..+++|+.|+++.+.... ..+......++|+.|++++|......+..+..+++|+.|++++|...
T Consensus 244 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 244 VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG--PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred cCceeccccChhHhCCCCCCEEECcCCeeec--cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence 0000 22344445555555555555443321 11111222345555666555443333444555566666666665554
Q ss_pred eeeecchhhhhccccccCCcccEEeccCCCCCCchh-hhhhcCCCcEEEeecCc
Q 038877 228 EMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT-WLVFAQNLKELRIDSCY 280 (298)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~~~~L~~L~l~~c~ 280 (298)
......+ ..+++|+.|++++|.-...++ .+..+++|+.|++.+|.
T Consensus 322 ~~~~~~~--------~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 322 GKIPVAL--------TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred CcCChhH--------hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence 4222222 345666666666663222333 34455666666666553
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=6e-23 Score=198.69 Aligned_cols=259 Identities=22% Similarity=0.226 Sum_probs=172.1
Q ss_pred CCccEEEeecCCCcC-CC-CCCCCCcccEEEecCCccc-ccCchHHhcCCCccEEEccCCcCCc-cCCccccCccCCCee
Q 038877 7 EGAKRISLMKTGIQS-PS-EIPTCPRLVTFLLDGNWIE-EITDGFFRSMSSLRVLSLRRNLALS-KLPSGISNLVSLHHL 82 (298)
Q Consensus 7 ~~L~~L~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L 82 (298)
.+++.|+++++.+.+ ++ .+..+++|++|++++|.+. .+|...+..+++|++|++++| .+. .+|. +.+++|++|
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n-~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN-NFTGSIPR--GSIPNLETL 145 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC-ccccccCc--cccCCCCEE
Confidence 468899999998877 33 4588999999999999887 788876779999999999999 554 5554 568999999
Q ss_pred eccCCccc-ccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhc
Q 038877 83 DLSWTRIR-GLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELL 161 (298)
Q Consensus 83 ~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (298)
++++|.+. .+|..++.+++|++|++++|...+.+|.. ++++++|++|++++|.+.+ ..+..+.
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~---------------~~p~~l~ 209 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVG---------------QIPRELG 209 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCcC---------------cCChHHc
Confidence 99999887 78888999999999999999777778875 8999999999999998843 3455555
Q ss_pred CCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhh-----
Q 038877 162 GLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEE----- 236 (298)
Q Consensus 162 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~----- 236 (298)
.+++|+.++++++.... ..+......++|+.|++.+|......+..+..+++|++|++++|.+.......+..
T Consensus 210 ~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 287 (968)
T PLN00113 210 QMKSLKWIYLGYNNLSG--EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLI 287 (968)
T ss_pred CcCCccEEECcCCccCC--cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcC
Confidence 66666666665554321 11112223344555555555433333334444555555555544433211111100
Q ss_pred ---------hhccc--cccCCcccEEeccCCCCCCchh-hhhhcCCCcEEEeecCccccccc
Q 038877 237 ---------VKKLF--RSGFRSLNTVSVDYCQKAKDLT-WLVFAQNLKELRIDSCYDVEEII 286 (298)
Q Consensus 237 ---------~~~~~--~~~~~~L~~L~l~~c~~l~~l~-~l~~~~~L~~L~l~~c~~l~~~~ 286 (298)
.+.++ -..+++|+.|++++|.-...++ .+..+++|++|++.+|.....++
T Consensus 288 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 349 (968)
T PLN00113 288 SLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP 349 (968)
T ss_pred EEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC
Confidence 00000 0356777777777773322332 35667888888888775443333
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=3.4e-23 Score=177.64 Aligned_cols=266 Identities=20% Similarity=0.220 Sum_probs=141.8
Q ss_pred cCCCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCe
Q 038877 5 EWEGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHH 81 (298)
Q Consensus 5 ~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~ 81 (298)
-++.|+.|+++.|.|.++| .+..=.++++|++++|.|+.+....|..+.+|.+|.+++| .++.+|. .|..+++|+.
T Consensus 147 ~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 147 ALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLES 225 (873)
T ss_pred hHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhh
Confidence 3455666666666665543 2233455666666666665544444555556666666666 5555554 3444666666
Q ss_pred eeccCCcccccc-hhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcccccccc--------ccccccC
Q 038877 82 LDLSWTRIRGLP-QELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEE--------GSVLYDD 152 (298)
Q Consensus 82 L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--------~~~~~~~ 152 (298)
|+|.+|.+.... -.|..+++|+.+.+..| .+..+..+++..|.++++|++..|++....+-+- +++.++.
T Consensus 226 LdLnrN~irive~ltFqgL~Sl~nlklqrN-~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na 304 (873)
T KOG4194|consen 226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRN-DISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA 304 (873)
T ss_pred hhccccceeeehhhhhcCchhhhhhhhhhc-CcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh
Confidence 666555554321 23444444444444444 2333333444444444444444444421100000 0000000
Q ss_pred -chhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcce-ee
Q 038877 153 -AEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEE-MK 230 (298)
Q Consensus 153 -~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~ 230 (298)
...-+...+.+++|+.|+++.|...++++ .......+|++|.++.|........++..+.+|++|++++|.+.. +.
T Consensus 305 I~rih~d~WsftqkL~~LdLs~N~i~~l~~--~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IE 382 (873)
T KOG4194|consen 305 IQRIHIDSWSFTQKLKELDLSSNRITRLDE--GSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIE 382 (873)
T ss_pred hheeecchhhhcccceeEeccccccccCCh--hHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEe
Confidence 22333444555666666666665544332 112233555666666665555555556666777777777777665 21
Q ss_pred ecchhhhhccccccCCcccEEeccCCCCCCchh--hhhhcCCCcEEEeecCcc
Q 038877 231 IDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT--WLVFAQNLKELRIDSCYD 281 (298)
Q Consensus 231 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~~~~L~~L~l~~c~~ 281 (298)
-... +=.++++|+.|++.++ +++.++ ....+++||+|++.+..-
T Consensus 383 Daa~------~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 383 DAAV------AFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred cchh------hhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCcc
Confidence 1111 1156899999999998 888886 457799999999988643
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=7.9e-22 Score=169.33 Aligned_cols=232 Identities=20% Similarity=0.225 Sum_probs=181.9
Q ss_pred cccCCCccEEEeecCCCcCCCCCCC-CCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCC
Q 038877 3 VEEWEGAKRISLMKTGIQSPSEIPT-CPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLH 80 (298)
Q Consensus 3 ~~~~~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~ 80 (298)
|..+++|+.+++.+|.++.+|.++. ..+|+.|++.+|.|+.+....+..++.|++||++.| .++++|. .|..-.+++
T Consensus 98 f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~ 176 (873)
T KOG4194|consen 98 FYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIK 176 (873)
T ss_pred HhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCce
Confidence 4578899999999999999998855 566999999999999887766889999999999999 8988865 466668899
Q ss_pred eeeccCCcccccc-hhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHh
Q 038877 81 HLDLSWTRIRGLP-QELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKE 159 (298)
Q Consensus 81 ~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (298)
+|+|++|.++.+. ..|..+.+|..|.++.| .++.+|...+.++++|+.|++..|.+. ......
T Consensus 177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~ir---------------ive~lt 240 (873)
T KOG4194|consen 177 KLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIR---------------IVEGLT 240 (873)
T ss_pred EEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhcccccee---------------eehhhh
Confidence 9999999999765 34778889999999998 567888777889999999999999882 223456
Q ss_pred hcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhc
Q 038877 160 LLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKK 239 (298)
Q Consensus 160 l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 239 (298)
|.++++|+.+.+..|....++. .....+..++.|++..|........++.+++.|+.|+++.|.+..+.++.-
T Consensus 241 FqgL~Sl~nlklqrN~I~kL~D--G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W----- 313 (873)
T KOG4194|consen 241 FQGLPSLQNLKLQRNDISKLDD--GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW----- 313 (873)
T ss_pred hcCchhhhhhhhhhcCcccccC--cceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh-----
Confidence 7788888888888887765443 223345677888888887777777788888888888888888777544433
Q ss_pred cccccCCcccEEeccCCCCCCch
Q 038877 240 LFRSGFRSLNTVSVDYCQKAKDL 262 (298)
Q Consensus 240 ~~~~~~~~L~~L~l~~c~~l~~l 262 (298)
+..++|+.|+++++ .++.+
T Consensus 314 ---sftqkL~~LdLs~N-~i~~l 332 (873)
T KOG4194|consen 314 ---SFTQKLKELDLSSN-RITRL 332 (873)
T ss_pred ---hhcccceeEecccc-ccccC
Confidence 34566777777766 45544
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=1.5e-19 Score=176.18 Aligned_cols=126 Identities=26% Similarity=0.374 Sum_probs=101.5
Q ss_pred CccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCC
Q 038877 8 GAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWT 87 (298)
Q Consensus 8 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~ 87 (298)
+|+.|.+.++++..+|....+.+|++|++.++.+..++.. +..+++|+.++++++..+..+|. ++.+++|+.|++++|
T Consensus 590 ~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c 667 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDC 667 (1153)
T ss_pred ccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc-cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCC
Confidence 4666666666666677666678899999998888877776 67889999999988756777775 677889999999887
Q ss_pred -cccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCC
Q 038877 88 -RIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGL 137 (298)
Q Consensus 88 -~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 137 (298)
.+..+|..++.+++|+.|++++|..+..+|.. + ++++|+.|++++|..
T Consensus 668 ~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~ 716 (1153)
T PLN03210 668 SSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSR 716 (1153)
T ss_pred CCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCC
Confidence 56788888999999999999998788888875 3 788899998888754
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.80 E-value=1.2e-18 Score=169.97 Aligned_cols=260 Identities=18% Similarity=0.212 Sum_probs=157.4
Q ss_pred cCCCccEEEeecCCCcCCC-CCCCCCcccEEEecCC-cccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCee
Q 038877 5 EWEGAKRISLMKTGIQSPS-EIPTCPRLVTFLLDGN-WIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHL 82 (298)
Q Consensus 5 ~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 82 (298)
.+.+|+.|++.++.+..++ ....+++|+.|+++++ .+..+|. +..+++|+.|++++|..+..+|..++.+.+|+.|
T Consensus 609 ~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 609 RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 4567888888888877765 3467888888888876 4556654 6678888888888876677778888888888888
Q ss_pred eccCC-cccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccc-----------------
Q 038877 83 DLSWT-RIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQE----------------- 144 (298)
Q Consensus 83 ~l~~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----------------- 144 (298)
++++| .++.+|..+ ++++|+.|++++|..+..+|.. .++|+.|++++|.+...-...
T Consensus 687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~ 761 (1153)
T PLN03210 687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEK 761 (1153)
T ss_pred eCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCccccccccccccccccccccccchhh
Confidence 88876 666777654 6777888888877555555431 245566666555532100000
Q ss_pred --------------------ccccccc-CchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCC
Q 038877 145 --------------------EGSVLYD-DAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSP 203 (298)
Q Consensus 145 --------------------~~~~~~~-~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 203 (298)
.+.+... ....++..+..+++|+.|+++.|.. +..++... .+++|+.|++++|...
T Consensus 762 l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~--L~~LP~~~-~L~sL~~L~Ls~c~~L 838 (1153)
T PLN03210 762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCIN--LETLPTGI-NLESLESLDLSGCSRL 838 (1153)
T ss_pred ccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCC--cCeeCCCC-CccccCEEECCCCCcc
Confidence 0000000 0112334444555555555554331 11122111 2344555555555321
Q ss_pred CcccccccccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchhh-hhhcCCCcEEEeecCccc
Q 038877 204 PLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTW-LVFAQNLKELRIDSCYDV 282 (298)
Q Consensus 204 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-l~~~~~L~~L~l~~c~~l 282 (298)
...+ ...++|+.|++++|.+..++. .+ ..+++|+.|++.+|..++.++. ...++.|+.+++.+|.++
T Consensus 839 ~~~p---~~~~nL~~L~Ls~n~i~~iP~-si--------~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 839 RTFP---DISTNISDLNLSRTGIEEVPW-WI--------EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred cccc---ccccccCEeECCCCCCccChH-HH--------hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence 1000 012455666666655544322 12 4689999999999999998864 467899999999999998
Q ss_pred cccc
Q 038877 283 EEII 286 (298)
Q Consensus 283 ~~~~ 286 (298)
+++.
T Consensus 907 ~~~~ 910 (1153)
T PLN03210 907 TEAS 910 (1153)
T ss_pred cccc
Confidence 8664
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=4.8e-21 Score=166.10 Aligned_cols=261 Identities=18% Similarity=0.175 Sum_probs=131.0
Q ss_pred cccCCCccEEEeecCCCcCCC-CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCe
Q 038877 3 VEEWEGAKRISLMKTGIQSPS-EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHH 81 (298)
Q Consensus 3 ~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 81 (298)
|-++..|..|++++|++.+.| .+..-.++-+|++++|+|..||...+-++..|-.||++.| .+..+|+.+..+.+|++
T Consensus 99 iF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 99 IFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQT 177 (1255)
T ss_pred hcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhh
Confidence 334444444444444444444 2233444444444444444444444444444444455444 44444444444445555
Q ss_pred eeccCCcccccc-hhhcCCCcccEEeccCCcc-CCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHh
Q 038877 82 LDLSWTRIRGLP-QELKALEKLRYLSLEGTRH-LSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKE 159 (298)
Q Consensus 82 L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (298)
|.|++|.+..+. ..+-.+++|++|.++++.. ...+|.. +..+.+|+.++++.|.+ ..+|..
T Consensus 178 L~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~L----------------p~vPec 240 (1255)
T KOG0444|consen 178 LKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENNL----------------PIVPEC 240 (1255)
T ss_pred hhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccCC----------------CcchHH
Confidence 555544433211 1122233344444443321 1233332 44444444444444444 235666
Q ss_pred hcCCCCccEEEEEecCccchh--------------------hhccccccccceeEEEEeccCCC-Ccccccccccccccc
Q 038877 160 LLGLKHLNVLSWSLHSSLAVQ--------------------KFLKYPKLLSITQSVGVYFCQSP-PLNVLHLAYMENLQE 218 (298)
Q Consensus 160 l~~l~~L~~l~l~~~~~~~~~--------------------~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~ 218 (298)
+..+++|+.|++++|....+. .++...-..+.|++|+..+|... .-.+..++++..|+.
T Consensus 241 ly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Lev 320 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEV 320 (1255)
T ss_pred HhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHH
Confidence 666666666666665542211 11111222344555555555442 223334666666666
Q ss_pred eecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchh-hhhhcCCCcEEEeecCcccccccccCcc
Q 038877 219 LVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT-WLVFAQNLKELRIDSCYDVEEIISVDKL 291 (298)
Q Consensus 219 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~~~~L~~L~l~~c~~l~~~~~~~~~ 291 (298)
++...|+..-+ ++.+ +.+++|+.|.++.+ .+-.+| .+..+|-|+.|++...+++---|.-.+|
T Consensus 321 f~aanN~LElV-PEgl--------cRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~da 384 (1255)
T KOG0444|consen 321 FHAANNKLELV-PEGL--------CRCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNLVMPPKPNDA 384 (1255)
T ss_pred HHhhccccccC-chhh--------hhhHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcCccCCCCcchh
Confidence 66666554432 2333 57899999999988 444454 4566899999999998887654443333
No 8
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.80 E-value=9e-20 Score=170.35 Aligned_cols=275 Identities=40% Similarity=0.563 Sum_probs=216.9
Q ss_pred CCcccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCc--ccccCchHHhcCCCccEEEccCCcCCccCCccccCccC
Q 038877 1 PKVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNW--IEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVS 78 (298)
Q Consensus 1 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~ 78 (298)
|+...+...|++++.++.+..++.-..++.|++|-+.++. +..++..+|..++.|++||+++|.....+|..++.+.+
T Consensus 517 ~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 517 PQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred ccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 4566778899999999999888888888899999999995 66788878999999999999999888899999999999
Q ss_pred CCeeeccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHH
Q 038877 79 LHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMK 158 (298)
Q Consensus 79 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (298)
|++|+++++.+..+|..++++.+|.+|++..+.....++. ....+++|++|.+....... ......
T Consensus 597 LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~~~~-------------~~~~l~ 662 (889)
T KOG4658|consen 597 LRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSALSN-------------DKLLLK 662 (889)
T ss_pred hhcccccCCCccccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeecccccc-------------chhhHH
Confidence 9999999999999999999999999999998866556644 36779999999998765322 455677
Q ss_pred hhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhh
Q 038877 159 ELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVK 238 (298)
Q Consensus 159 ~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 238 (298)
.+..+++|+.+............+....+.....+.+.+.++ ........+..+.+|+.|.|.+|...+..+.....
T Consensus 663 el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~-~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~-- 739 (889)
T KOG4658|consen 663 ELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGC-SKRTLISSLGSLGNLEELSILDCGISEIVIEWEES-- 739 (889)
T ss_pred hhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccc-ccceeecccccccCcceEEEEcCCCchhhcccccc--
Confidence 888888999888876554223344444444444455554432 23444556888999999999999987633332210
Q ss_pred ccccc-cCCcccEEeccCCCCCCchhhhhhcCCCcEEEeecCcccccccccCcccc
Q 038877 239 KLFRS-GFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYDVEEIISVDKLSD 293 (298)
Q Consensus 239 ~~~~~-~~~~L~~L~l~~c~~l~~l~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 293 (298)
.... .|+++..+.+.+|...+++.|..+.|+|+.|.+.+|..++++...+.+..
T Consensus 740 -~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~ 794 (889)
T KOG4658|consen 740 -LIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALL 794 (889)
T ss_pred -cchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhh
Confidence 0112 37789999999999999999999999999999999999999987776644
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.77 E-value=7.7e-21 Score=164.84 Aligned_cols=246 Identities=20% Similarity=0.297 Sum_probs=163.7
Q ss_pred cccCCCccEEEeecCCCcCCC-CCCCCCcccEEEecCCccc--ccCchHHhcCCCccEEEccCCcCCccCCccccCccCC
Q 038877 3 VEEWEGAKRISLMKTGIQSPS-EIPTCPRLVTFLLDGNWIE--EITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSL 79 (298)
Q Consensus 3 ~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L 79 (298)
++++.+|++|++.+|.+..+. .++.++.|+.+.+..|++. .+|.. +-++..|.+||++.| .+.+.|..+..-+++
T Consensus 51 L~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShN-qL~EvP~~LE~AKn~ 128 (1255)
T KOG0444|consen 51 LSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHN-QLREVPTNLEYAKNS 128 (1255)
T ss_pred HHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCch-hcccccceeeecchh-hhhhcchhhhhhcCc
Confidence 455667777777777766643 4577777777777777665 67776 557777888888888 777777777777777
Q ss_pred CeeeccCCcccccchh-hcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHH
Q 038877 80 HHLDLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMK 158 (298)
Q Consensus 80 ~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (298)
-+|+|++|.+..+|.. +.+++.|-.|++++| .+..+|.. +..+..|++|.+++|.+ .-.-..
T Consensus 129 iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL---------------~hfQLr 191 (1255)
T KOG0444|consen 129 IVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPL---------------NHFQLR 191 (1255)
T ss_pred EEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChh---------------hHHHHh
Confidence 8888888887777743 567777778888777 56677775 77777888888887777 233445
Q ss_pred hhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhh
Q 038877 159 ELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVK 238 (298)
Q Consensus 159 ~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 238 (298)
.+.++++|+.|.+++.. .....++....-..+|+.++++.|. ....+..+.++++|+.|++++|++.++.+..
T Consensus 192 QLPsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~iteL~~~~----- 264 (1255)
T KOG0444|consen 192 QLPSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNKITELNMTE----- 264 (1255)
T ss_pred cCccchhhhhhhccccc-chhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcCceeeeeccH-----
Confidence 55566666666666432 2344455555555667777777764 2233445677788888888888877744332
Q ss_pred ccccccCCcccEEeccCCCCCCchhh-hhhcCCCcEEEeecC
Q 038877 239 KLFRSGFRSLNTVSVDYCQKAKDLTW-LVFAQNLKELRIDSC 279 (298)
Q Consensus 239 ~~~~~~~~~L~~L~l~~c~~l~~l~~-l~~~~~L~~L~l~~c 279 (298)
+...+|+.|+++.+ .++.+|. +..+++|+.|.+.+.
T Consensus 265 ----~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~N 301 (1255)
T KOG0444|consen 265 ----GEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNN 301 (1255)
T ss_pred ----HHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccC
Confidence 23466777777776 5666653 445666655554443
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.74 E-value=1.9e-19 Score=148.51 Aligned_cols=109 Identities=35% Similarity=0.518 Sum_probs=91.9
Q ss_pred CCcccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCC
Q 038877 1 PKVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLH 80 (298)
Q Consensus 1 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 80 (298)
|+++.+.+|..|++..|.+..+|.+.+|..|.++++..|+++.+|.....+++++.+||+.+| +++++|..+..+.+|.
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~ 278 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLE 278 (565)
T ss_pred hhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhh
Confidence 467888888888888888888888888888888888888888888776678888888888888 8888888888888888
Q ss_pred eeeccCCcccccchhhcCCCcccEEeccCCc
Q 038877 81 HLDLSWTRIRGLPQELKALEKLRYLSLEGTR 111 (298)
Q Consensus 81 ~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~ 111 (298)
+||+++|.++.+|..++++ .|+.|-+.||.
T Consensus 279 rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 279 RLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred hhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 8888888888888888888 78888877763
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.72 E-value=7.9e-21 Score=156.54 Aligned_cols=244 Identities=24% Similarity=0.283 Sum_probs=188.7
Q ss_pred CcccCCCccEEEeecCCCcCCC-CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCC
Q 038877 2 KVEEWEGAKRISLMKTGIQSPS-EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLH 80 (298)
Q Consensus 2 ~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 80 (298)
++.++..+.++++++|.+.++| .+..+..++.++.+.|.+..+|+. ++.+..|..++++++ ...++|+.++.+..|.
T Consensus 63 dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~-i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~ 140 (565)
T KOG0472|consen 63 DLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQ-IGSLISLVKLDCSSN-ELKELPDSIGRLLDLE 140 (565)
T ss_pred hhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHH-Hhhhhhhhhhhcccc-ceeecCchHHHHhhhh
Confidence 3556677777888888777755 457777788888888877777777 777888888888888 7777777788888888
Q ss_pred eeeccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhh
Q 038877 81 HLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKEL 160 (298)
Q Consensus 81 ~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 160 (298)
.++..+|.+..+|+.+..+.+|..+++.++ .....|+..+. |+.|+++++..|-+. .+|..+
T Consensus 141 dl~~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~-m~~L~~ld~~~N~L~----------------tlP~~l 202 (565)
T KOG0472|consen 141 DLDATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIA-MKRLKHLDCNSNLLE----------------TLPPEL 202 (565)
T ss_pred hhhccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHHH-HHHHHhcccchhhhh----------------cCChhh
Confidence 888888888888888888888888888887 44566665344 888888888877663 378889
Q ss_pred cCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhcc
Q 038877 161 LGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKL 240 (298)
Q Consensus 161 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 240 (298)
+.+.+|+.+++..+.....++++. |+.+..|+++.|.........+..++++..|++.+|+..+++.+.+
T Consensus 203 g~l~~L~~LyL~~Nki~~lPef~g----cs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~c------ 272 (565)
T KOG0472|consen 203 GGLESLELLYLRRNKIRFLPEFPG----CSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC------ 272 (565)
T ss_pred cchhhhHHHHhhhcccccCCCCCc----cHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHH------
Confidence 999999999998887665555444 4667888888886555555567788999999999999988665554
Q ss_pred ccccCCcccEEeccCCCCCCchhh-hhhcCCCcEEEeecCc
Q 038877 241 FRSGFRSLNTVSVDYCQKAKDLTW-LVFAQNLKELRIDSCY 280 (298)
Q Consensus 241 ~~~~~~~L~~L~l~~c~~l~~l~~-l~~~~~L~~L~l~~c~ 280 (298)
-+.+|+.||++++ .++.+|. ++.+ .|+.|.+.|.+
T Consensus 273 ---lLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 273 ---LLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred ---HhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCc
Confidence 5788999999998 7888864 6777 88888888875
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=1.1e-18 Score=128.41 Aligned_cols=154 Identities=27% Similarity=0.383 Sum_probs=120.0
Q ss_pred ccCCCccEEEeecCCCcCCC-CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCee
Q 038877 4 EEWEGAKRISLMKTGIQSPS-EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHL 82 (298)
Q Consensus 4 ~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 82 (298)
-.++++.+|.+++|.++.+| .+..+.+|+.|++.+|+++++|.+ ++.+++|+.|+++-| .+..+|.+|+.++.|+.|
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmn-rl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMN-RLNILPRGFGSFPALEVL 107 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchh-hhhcCccccCCCchhhhh
Confidence 34566777788888877754 557788888888888888888877 788888888888888 777788888888888888
Q ss_pred eccCCccc--ccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhh
Q 038877 83 DLSWTRIR--GLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKEL 160 (298)
Q Consensus 83 ~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 160 (298)
++.+|.+. .+|..+..++.|+.|.++++ ....+|.+ ++++++|+.|.+.+|.+.+ +++.+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndll~----------------lpkei 169 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDLLS----------------LPKEI 169 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCchhh----------------CcHHH
Confidence 88887766 67777777888888888887 56777776 8888888888888877643 77778
Q ss_pred cCCCCccEEEEEecCcc
Q 038877 161 LGLKHLNVLSWSLHSSL 177 (298)
Q Consensus 161 ~~l~~L~~l~l~~~~~~ 177 (298)
+.++.|+.+.+.++...
T Consensus 170 g~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 170 GDLTRLRELHIQGNRLT 186 (264)
T ss_pred HHHHHHHHHhcccceee
Confidence 88888888888777543
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.60 E-value=9.8e-17 Score=144.79 Aligned_cols=252 Identities=17% Similarity=0.174 Sum_probs=129.3
Q ss_pred CccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCC
Q 038877 8 GAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWT 87 (298)
Q Consensus 8 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~ 87 (298)
+++.|...+|.+...-......+|++++++.+.+..+| .++..+.+|+.++...| .+..+|..+....+|+.|.+.+|
T Consensus 220 ~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~n 297 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHN-RLVALPLRISRITSLVSLSAAYN 297 (1081)
T ss_pred chheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHhhhh
Confidence 34444444444443222234456677777777666666 55677777777777777 66666666666666777777777
Q ss_pred cccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCc-ccEEEeeccCCccccccccccccccCchhHH-HhhcCCCC
Q 038877 88 RIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSK-LEVLRLLWCGLWSRKEQEEGSVLYDDAEPLM-KELLGLKH 165 (298)
Q Consensus 88 ~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~ 165 (298)
.+..+|......+.|++|++..+ .+..+|..++.-+.. |+.++.+.+.+.. .+ ..=.....
T Consensus 298 el~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~----------------lp~~~e~~~~~ 360 (1081)
T KOG0618|consen 298 ELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLST----------------LPSYEENNHAA 360 (1081)
T ss_pred hhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccc----------------cccccchhhHH
Confidence 66666666666677777777666 345555433333332 4444444333311 00 00001123
Q ss_pred ccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhh--------
Q 038877 166 LNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEV-------- 237 (298)
Q Consensus 166 L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~-------- 237 (298)
|+.|.+.+|...+ ..++. ....++|+.|++++|.........+.+++.|+.|+++||+...++......+
T Consensus 361 Lq~LylanN~Ltd-~c~p~-l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ah 438 (1081)
T KOG0618|consen 361 LQELYLANNHLTD-SCFPV-LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAH 438 (1081)
T ss_pred HHHHHHhcCcccc-cchhh-hccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhc
Confidence 3334444333221 11111 1222445555555554444444445555555555555555444321111000
Q ss_pred -----hccccccCCcccEEeccCCCCCCchhhhhhc--CCCcEEEeecCcc
Q 038877 238 -----KKLFRSGFRSLNTVSVDYCQKAKDLTWLVFA--QNLKELRIDSCYD 281 (298)
Q Consensus 238 -----~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~~--~~L~~L~l~~c~~ 281 (298)
.++.....++|+.+|++.+ +++.+...... |+|++|+++|...
T Consensus 439 sN~l~~fPe~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 439 SNQLLSFPELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred CCceeechhhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCcc
Confidence 0111135788888888877 67765432222 6888888888764
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.59 E-value=4.4e-15 Score=137.17 Aligned_cols=239 Identities=16% Similarity=0.181 Sum_probs=128.2
Q ss_pred CccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCC
Q 038877 8 GAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWT 87 (298)
Q Consensus 8 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~ 87 (298)
+...|++.++.++.+|... .++++.|++++|.+..+|... ..+|++|++++| .++.+|..+. .+|+.|++++|
T Consensus 179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l---~~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENL---QGNIKTLYANSN-QLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred CceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhh---ccCCCEEECCCC-ccccCChhhh--ccccEEECcCC
Confidence 4556677766666665421 246777777777666666542 246777777777 6666665432 35677777777
Q ss_pred cccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcccccc-----ccccccccCchhHHHhhcC
Q 038877 88 RIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQ-----EEGSVLYDDAEPLMKELLG 162 (298)
Q Consensus 88 ~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~ 162 (298)
.+..+|..+. .+|+.|++++| .+..+|.. +. ++|+.|++++|.+..--.. ....+..+....++..+
T Consensus 252 ~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~-l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l-- 323 (754)
T PRK15370 252 RITELPERLP--SALQSLDLFHN-KISCLPEN-LP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETL-- 323 (754)
T ss_pred ccCcCChhHh--CCCCEEECcCC-ccCccccc-cC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccc--
Confidence 6666665443 35677777665 33455543 22 3566677766665320000 00000000000111111
Q ss_pred CCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhcccc
Q 038877 163 LKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFR 242 (298)
Q Consensus 163 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 242 (298)
.++|+.|++++|....++. ..++.|+.|++++|...... ..+ .+.|+.|++++|.+..++..
T Consensus 324 ~~sL~~L~Ls~N~Lt~LP~-----~l~~sL~~L~Ls~N~L~~LP-~~l--p~~L~~LdLs~N~Lt~LP~~---------- 385 (754)
T PRK15370 324 PPGLKTLEAGENALTSLPA-----SLPPELQVLDVSKNQITVLP-ETL--PPTITTLDVSRNALTNLPEN---------- 385 (754)
T ss_pred cccceeccccCCccccCCh-----hhcCcccEEECCCCCCCcCC-hhh--cCCcCEEECCCCcCCCCCHh----------
Confidence 2456666666665443321 12356677777776543221 112 25677777777766553221
Q ss_pred ccCCcccEEeccCCCCCCchhh-----hhhcCCCcEEEeecCcc
Q 038877 243 SGFRSLNTVSVDYCQKAKDLTW-----LVFAQNLKELRIDSCYD 281 (298)
Q Consensus 243 ~~~~~L~~L~l~~c~~l~~l~~-----l~~~~~L~~L~l~~c~~ 281 (298)
-...|+.|++++| .++.+|. ...+|.+..|++.+.+.
T Consensus 386 -l~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 386 -LPAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred -HHHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 1235777777777 5666541 23357778888877653
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.59 E-value=5.8e-17 Score=146.24 Aligned_cols=273 Identities=22% Similarity=0.266 Sum_probs=167.2
Q ss_pred ccCCCccEEEeecCCCcCCC-CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCee
Q 038877 4 EEWEGAKRISLMKTGIQSPS-EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHL 82 (298)
Q Consensus 4 ~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 82 (298)
.++-+|+.|++++|.+..+| .+..+.+|+.|.++.|.+..+|.. ..++.+|+++++.+| ....+|..+..+.+|++|
T Consensus 42 ~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s-~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~L 119 (1081)
T KOG0618|consen 42 EKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSS-CSNMRNLQYLNLKNN-RLQSLPASISELKNLQYL 119 (1081)
T ss_pred hheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchh-hhhhhcchhheeccc-hhhcCchhHHhhhccccc
Confidence 34455777777777777666 335566666666666666555544 556666666666666 555556556556666666
Q ss_pred eccCCcccccchhh------------------------------------------------------------------
Q 038877 83 DLSWTRIRGLPQEL------------------------------------------------------------------ 96 (298)
Q Consensus 83 ~l~~~~~~~l~~~~------------------------------------------------------------------ 96 (298)
++++|.+..+|..+
T Consensus 120 dlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~ 199 (1081)
T KOG0618|consen 120 DLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLA 199 (1081)
T ss_pred ccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhcc
Confidence 65555443221100
Q ss_pred --------------------------------------cCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCc
Q 038877 97 --------------------------------------KALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLW 138 (298)
Q Consensus 97 --------------------------------------~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 138 (298)
..-.+|++++++++ ....+| .+++.+.+|+.++...|.++
T Consensus 200 ~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n-~l~~lp-~wi~~~~nle~l~~n~N~l~ 277 (1081)
T KOG0618|consen 200 NLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHN-NLSNLP-EWIGACANLEALNANHNRLV 277 (1081)
T ss_pred chhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchh-hhhcch-HHHHhcccceEecccchhHH
Confidence 00113334444443 234556 45888999999999888874
Q ss_pred ccccc----cc---ccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccc-----------------------ccc
Q 038877 139 SRKEQ----EE---GSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKY-----------------------PKL 188 (298)
Q Consensus 139 ~~~~~----~~---~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~-----------------------~~~ 188 (298)
..-.. +. .....+....++..+..+++|++|++..+....++..... ...
T Consensus 278 ~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~ 357 (1081)
T KOG0618|consen 278 ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENN 357 (1081)
T ss_pred hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchh
Confidence 31111 11 1112233445566677788999999988765443221100 112
Q ss_pred ccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchh-----
Q 038877 189 LSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT----- 263 (298)
Q Consensus 189 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~----- 263 (298)
.+.|+.|++.+|...+...+.+.++.+|+.|+++.|.+.+++...+ ..++.|+.|+++++ .++.++
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~--------~kle~LeeL~LSGN-kL~~Lp~tva~ 428 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKL--------RKLEELEELNLSGN-KLTTLPDTVAN 428 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHH--------hchHHhHHHhcccc-hhhhhhHHHHh
Confidence 3457788888888888888889999999999999999887665555 45677777777776 555543
Q ss_pred ------------------hhhhcCCCcEEEeecCcccccccccCc
Q 038877 264 ------------------WLVFAQNLKELRIDSCYDVEEIISVDK 290 (298)
Q Consensus 264 ------------------~l~~~~~L~~L~l~~c~~l~~~~~~~~ 290 (298)
.+..+|.|+.+|++ |..++++.-.++
T Consensus 429 ~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~~~ 472 (1081)
T KOG0618|consen 429 LGRLHTLRAHSNQLLSFPELAQLPQLKVLDLS-CNNLSEVTLPEA 472 (1081)
T ss_pred hhhhHHHhhcCCceeechhhhhcCcceEEecc-cchhhhhhhhhh
Confidence 33346788888887 456666654433
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.59 E-value=1.8e-16 Score=130.67 Aligned_cols=108 Identities=31% Similarity=0.455 Sum_probs=82.4
Q ss_pred CCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCeeeccC-Ccccccch-hhcCCCcccE
Q 038877 28 CPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHLDLSW-TRIRGLPQ-ELKALEKLRY 104 (298)
Q Consensus 28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~-~~~~~l~~-~~~~l~~L~~ 104 (298)
.+.-++++|..|.|..+|+.+|+.+++|+.||++.| .++++ |.+|.++.+|..|.+.+ |+++.+|+ .|+.+..|+.
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 345677888888888888888888888888888888 88876 66888888887777766 78888874 4777888888
Q ss_pred EeccCCccCCCCchhhhcCCCcccEEEeeccCC
Q 038877 105 LSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGL 137 (298)
Q Consensus 105 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 137 (298)
|.+.-+ .+.-+..+.+..++++..|.+.+|.+
T Consensus 145 LllNan-~i~Cir~~al~dL~~l~lLslyDn~~ 176 (498)
T KOG4237|consen 145 LLLNAN-HINCIRQDALRDLPSLSLLSLYDNKI 176 (498)
T ss_pred HhcChh-hhcchhHHHHHHhhhcchhcccchhh
Confidence 877776 34455555677888888888777765
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=2.7e-17 Score=121.02 Aligned_cols=134 Identities=26% Similarity=0.401 Sum_probs=123.2
Q ss_pred CCcccCCCccEEEeecCCCcCCC-CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCc--cCCccccCcc
Q 038877 1 PKVEEWEGAKRISLMKTGIQSPS-EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALS--KLPSGISNLV 77 (298)
Q Consensus 1 ~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~p~~~~~l~ 77 (298)
|+|+.+.+|+.|++.+|++.++| .++.++.|+.|++.-|.+..+|.. |+.++.|++||+.+| .+. .+|..|..+.
T Consensus 50 pnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg-fgs~p~levldltyn-nl~e~~lpgnff~m~ 127 (264)
T KOG0617|consen 50 PNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG-FGSFPALEVLDLTYN-NLNENSLPGNFFYMT 127 (264)
T ss_pred CcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc-cCCCchhhhhhcccc-ccccccCCcchhHHH
Confidence 68999999999999999999987 669999999999999998888888 999999999999999 666 5788888899
Q ss_pred CCCeeeccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCc
Q 038877 78 SLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLW 138 (298)
Q Consensus 78 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 138 (298)
.|+.|+++.|.++-+|..++++++|+.|.+.++ .+-++|.+ ++.++.|+.|++.+|+++
T Consensus 128 tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpke-ig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 128 TLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKE-IGDLTRLRELHIQGNRLT 186 (264)
T ss_pred HHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHH-HHHHHHHHHHhcccceee
Confidence 999999999999999999999999999999998 55678887 999999999999999884
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.59 E-value=1.3e-14 Score=133.63 Aligned_cols=218 Identities=21% Similarity=0.123 Sum_probs=121.8
Q ss_pred CCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccC
Q 038877 7 EGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSW 86 (298)
Q Consensus 7 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 86 (298)
.+|+.|++.+|.++.+|.. +++|++|++++|.+..+|.. .++|+.|+++.| .+..+|..+ .+|+.|++++
T Consensus 222 ~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N-~L~~Lp~lp---~~L~~L~Ls~ 291 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSN-PLTHLPALP---SGLCKLWIFG 291 (788)
T ss_pred cCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc----ccccceeeccCC-chhhhhhch---hhcCEEECcC
Confidence 3678888888888887754 57888888888888777642 356777777777 566555422 3455666666
Q ss_pred CcccccchhhcCCCcccEEeccCCccCCCCchhhhcC-----------------CCcccEEEeeccCCcccccccccccc
Q 038877 87 TRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISG-----------------FSKLEVLRLLWCGLWSRKEQEEGSVL 149 (298)
Q Consensus 87 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-----------------l~~L~~L~l~~~~~~~~~~~~~~~~~ 149 (298)
|.++.+|.. .++|+.|++++| .+..+|.. ... ..+|+.|++++|.+..
T Consensus 292 N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l-p~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~---------- 356 (788)
T PRK15387 292 NQLTSLPVL---PPGLQELSVSDN-QLASLPAL-PSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS---------- 356 (788)
T ss_pred Ccccccccc---ccccceeECCCC-ccccCCCC-cccccccccccCccccccccccccceEecCCCccCC----------
Confidence 666655542 345666666665 23333321 110 1245555555555522
Q ss_pred ccCchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCccee
Q 038877 150 YDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEM 229 (298)
Q Consensus 150 ~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 229 (298)
++.. ..+|+.|+++.|....++. ....|+.|++++|....... ..+.|+.|++++|.+..+
T Consensus 357 ------LP~l---p~~L~~L~Ls~N~L~~LP~------l~~~L~~LdLs~N~Lt~LP~----l~s~L~~LdLS~N~LssI 417 (788)
T PRK15387 357 ------LPTL---PSELYKLWAYNNRLTSLPA------LPSGLKELIVSGNRLTSLPV----LPSELKELMVSGNRLTSL 417 (788)
T ss_pred ------CCCC---CcccceehhhccccccCcc------cccccceEEecCCcccCCCC----cccCCCEEEccCCcCCCC
Confidence 1111 1234444454443332221 12346666666664332111 124566777777665543
Q ss_pred eecchhhhhccccccCCcccEEeccCCCCCCchhh-hhhcCCCcEEEeecCcc
Q 038877 230 KIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTW-LVFAQNLKELRIDSCYD 281 (298)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-l~~~~~L~~L~l~~c~~ 281 (298)
+ ..+..|+.|++++| .++.+|. +..++.|+.|++.+++.
T Consensus 418 P------------~l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 418 P------------MLPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred C------------cchhhhhhhhhccC-cccccChHHhhccCCCeEECCCCCC
Confidence 2 12345667777776 5666653 45677788888877653
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.59 E-value=1e-15 Score=130.23 Aligned_cols=251 Identities=22% Similarity=0.189 Sum_probs=121.7
Q ss_pred EEeecCCCcC--CCC-CCCCCcccEEEecCCccc-----ccCchHHhcCCCccEEEccCCcCCcc-------CCccccCc
Q 038877 12 ISLMKTGIQS--PSE-IPTCPRLVTFLLDGNWIE-----EITDGFFRSMSSLRVLSLRRNLALSK-------LPSGISNL 76 (298)
Q Consensus 12 L~l~~~~~~~--~~~-~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~-------~p~~~~~l 76 (298)
|+|.++.+++ ... +..+.+|+++++.++.++ .++.. +...++++.++++++ .+.. ++..+..+
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHH-HhhCCCceEEecccc-ccCCcchHHHHHHHHHHhc
Confidence 4455555442 221 134445666666666653 12222 445556666666665 3331 12344556
Q ss_pred cCCCeeeccCCccc-ccchhhcCC---CcccEEeccCCccCCC----CchhhhcCC-CcccEEEeeccCCcccccccccc
Q 038877 77 VSLHHLDLSWTRIR-GLPQELKAL---EKLRYLSLEGTRHLSI----IPHQLISGF-SKLEVLRLLWCGLWSRKEQEEGS 147 (298)
Q Consensus 77 ~~L~~L~l~~~~~~-~l~~~~~~l---~~L~~L~l~~~~~~~~----~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~ 147 (298)
++|+.|++++|.+. ..+..+..+ ++|++|++++|+.... +.. .+..+ ++|+.|++++|.+..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~-~l~~~~~~L~~L~L~~n~l~~-------- 151 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK-GLKDLPPALEKLVLGRNRLEG-------- 151 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH-HHHhCCCCceEEEcCCCcCCc--------
Confidence 66666666666554 233333223 3366666666633211 111 13444 666677776666632
Q ss_pred ccccCchhHHHhhcCCCCccEEEEEecCccc--hhhhccccccccceeEEEEeccCCCCccc----ccccccccccceec
Q 038877 148 VLYDDAEPLMKELLGLKHLNVLSWSLHSSLA--VQKFLKYPKLLSITQSVGVYFCQSPPLNV----LHLAYMENLQELVI 221 (298)
Q Consensus 148 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l 221 (298)
.....+...+..+++|+.++++++.... ...+.......+.|+.|++++|...+... ..+..+++|+.|++
T Consensus 152 ---~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~l 228 (319)
T cd00116 152 ---ASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNL 228 (319)
T ss_pred ---hHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEec
Confidence 0012334455556666666666655432 11111111122466666666665432221 12445566777777
Q ss_pred ccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchh------hhhhcCCCcEEEeecCc
Q 038877 222 LNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT------WLVFAQNLKELRIDSCY 280 (298)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~------~l~~~~~L~~L~l~~c~ 280 (298)
++|.+....+..+.. .++ ...+.|++|++++| .+++.. .+..+++|+++++.++.
T Consensus 229 s~n~l~~~~~~~l~~--~~~-~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 229 GDNNLTDAGAAALAS--ALL-SPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred CCCcCchHHHHHHHH--HHh-ccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 776655422222210 001 12356777777776 454211 12334667777776653
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.55 E-value=2.4e-14 Score=132.31 Aligned_cols=161 Identities=20% Similarity=0.209 Sum_probs=109.9
Q ss_pred CcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccchhhcCCCcccEEecc
Q 038877 29 PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLE 108 (298)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~ 108 (298)
.+...|+++++.+..+|.. + .+.|+.|++++| .+..+|..+. .+|++|++++|.++.+|..+. .+|+.|+++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~-I--p~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLTTIPAC-I--PEQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcCcCCcc-c--ccCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECc
Confidence 4578899999988888865 3 357999999999 8988987654 589999999999999987653 479999999
Q ss_pred CCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhcccccc
Q 038877 109 GTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKL 188 (298)
Q Consensus 109 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~ 188 (298)
+|. +..+|.. +. .+|+.|++++|.+.. ++..+. ++|+.|++++|....++. ..
T Consensus 250 ~N~-L~~LP~~-l~--s~L~~L~Ls~N~L~~----------------LP~~l~--~sL~~L~Ls~N~Lt~LP~-----~l 302 (754)
T PRK15370 250 INR-ITELPER-LP--SALQSLDLFHNKISC----------------LPENLP--EELRYLSVYDNSIRTLPA-----HL 302 (754)
T ss_pred CCc-cCcCChh-Hh--CCCCEEECcCCccCc----------------cccccC--CCCcEEECCCCccccCcc-----cc
Confidence 994 5678875 33 579999999998843 333332 478888888876554321 11
Q ss_pred ccceeEEEEeccCCCCcccccccccccccceecccCCcc
Q 038877 189 LSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLE 227 (298)
Q Consensus 189 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 227 (298)
...++.|++.+|....... .+ .++|+.|++++|.+.
T Consensus 303 p~sL~~L~Ls~N~Lt~LP~-~l--~~sL~~L~Ls~N~Lt 338 (754)
T PRK15370 303 PSGITHLNVQSNSLTALPE-TL--PPGLKTLEAGENALT 338 (754)
T ss_pred hhhHHHHHhcCCccccCCc-cc--cccceeccccCCccc
Confidence 2345555555554322111 11 134555555555443
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.55 E-value=2.5e-15 Score=127.90 Aligned_cols=258 Identities=17% Similarity=0.094 Sum_probs=177.7
Q ss_pred ccCCCccEEEeecCCCcC-----CC-CCCCCCcccEEEecCCcccc------cCchHHhcCCCccEEEccCCcCCc-cCC
Q 038877 4 EEWEGAKRISLMKTGIQS-----PS-EIPTCPRLVTFLLDGNWIEE------ITDGFFRSMSSLRVLSLRRNLALS-KLP 70 (298)
Q Consensus 4 ~~~~~L~~L~l~~~~~~~-----~~-~~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~~L~~L~l~~~~~~~-~~p 70 (298)
..+..|+.+++.++.+.. ++ .+...+.+++++++++.++. .....+..+++|+.|++++| .+. ..+
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~ 98 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDN-ALGPDGC 98 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCC-CCChhHH
Confidence 345679999999998854 33 23677889999999986652 11234777889999999999 554 344
Q ss_pred ccccCccC---CCeeeccCCccc-----ccchhhcCC-CcccEEeccCCccCCC----CchhhhcCCCcccEEEeeccCC
Q 038877 71 SGISNLVS---LHHLDLSWTRIR-----GLPQELKAL-EKLRYLSLEGTRHLSI----IPHQLISGFSKLEVLRLLWCGL 137 (298)
Q Consensus 71 ~~~~~l~~---L~~L~l~~~~~~-----~l~~~~~~l-~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~ 137 (298)
..+..+.. |++|++++|.+. .+...+..+ ++|+.+++++|..... ++. .+..+++|++|++++|.+
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK-ALRANRDLKELNLANNGI 177 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH-HHHhCCCcCEEECcCCCC
Confidence 44544444 999999999876 233456677 8999999999965422 222 266788999999999988
Q ss_pred ccccccccccccccCchhHHHhhcCCCCccEEEEEecCccc--hhhhccccccccceeEEEEeccCCCCcccccccc---
Q 038877 138 WSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLA--VQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAY--- 212 (298)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~--- 212 (298)
.. .....++..+..+++|+.++++++.... ...+.......+.|+.|++++|...+.....+..
T Consensus 178 ~~-----------~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~ 246 (319)
T cd00116 178 GD-----------AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALL 246 (319)
T ss_pred ch-----------HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHh
Confidence 42 1122345667777899999999887643 2334444455688999999999765544333322
Q ss_pred --cccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchh------hhhhc-CCCcEEEeecC
Q 038877 213 --MENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT------WLVFA-QNLKELRIDSC 279 (298)
Q Consensus 213 --l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~------~l~~~-~~L~~L~l~~c 279 (298)
.+.|+.|++.+|.+...+...+.. ....++.|+.+++++| .+++.+ .+... +.|+++++.+-
T Consensus 247 ~~~~~L~~L~l~~n~i~~~~~~~l~~----~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 247 SPNISLLTLSLSCNDITDDGAKDLAE----VLAEKESLLELDLRGN-KFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred ccCCCceEEEccCCCCCcHHHHHHHH----HHhcCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 379999999999886422222110 0134589999999999 677542 12234 78999888764
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.52 E-value=8.1e-14 Score=128.42 Aligned_cols=233 Identities=19% Similarity=0.155 Sum_probs=149.6
Q ss_pred CCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccC
Q 038877 7 EGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSW 86 (298)
Q Consensus 7 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 86 (298)
.+-..|+++++.++.+|... .++|+.|++.+|.++.+|.. .++|++|++++| .++.+|.. .++|+.|++.+
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l----p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL----PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC----CCCCcEEEecCC-ccCcccCc---ccccceeeccC
Confidence 45668999999999988632 25899999999999888763 588999999999 88888753 46899999999
Q ss_pred CcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcccccc----ccccccccCchhHHHhhcC
Q 038877 87 TRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQ----EEGSVLYDDAEPLMKELLG 162 (298)
Q Consensus 87 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~ 162 (298)
|.+..+|... .+|+.|++++| .+..+|. .+++|+.|++++|.+..-... ..+.+..+... .+..
T Consensus 272 N~L~~Lp~lp---~~L~~L~Ls~N-~Lt~LP~----~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~----~LP~ 339 (788)
T PRK15387 272 NPLTHLPALP---SGLCKLWIFGN-QLTSLPV----LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLT----SLPT 339 (788)
T ss_pred Cchhhhhhch---hhcCEEECcCC-ccccccc----cccccceeECCCCccccCCCCcccccccccccCccc----cccc
Confidence 9988887643 57889999998 4566665 247899999999988541000 00000000000 1111
Q ss_pred C-CCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccc
Q 038877 163 L-KHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLF 241 (298)
Q Consensus 163 l-~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 241 (298)
+ .+|+.|++++|....++. ...+++.|++.+|...... .+ .+.|+.|++++|.+..++
T Consensus 340 lp~~Lq~LdLS~N~Ls~LP~------lp~~L~~L~Ls~N~L~~LP--~l--~~~L~~LdLs~N~Lt~LP----------- 398 (788)
T PRK15387 340 LPSGLQELSVSDNQLASLPT------LPSELYKLWAYNNRLTSLP--AL--PSGLKELIVSGNRLTSLP----------- 398 (788)
T ss_pred cccccceEecCCCccCCCCC------CCcccceehhhccccccCc--cc--ccccceEEecCCcccCCC-----------
Confidence 1 245666666554433221 1234556666655433211 11 246777777777665422
Q ss_pred cccCCcccEEeccCCCCCCchhhhhhcCCCcEEEeecCccccccc
Q 038877 242 RSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYDVEEII 286 (298)
Q Consensus 242 ~~~~~~L~~L~l~~c~~l~~l~~l~~~~~L~~L~l~~c~~l~~~~ 286 (298)
...++|+.|++++| .++.+|. ...+|+.|++.++ .++.++
T Consensus 399 -~l~s~L~~LdLS~N-~LssIP~--l~~~L~~L~Ls~N-qLt~LP 438 (788)
T PRK15387 399 -VLPSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRN-QLTRLP 438 (788)
T ss_pred -CcccCCCEEEccCC-cCCCCCc--chhhhhhhhhccC-cccccC
Confidence 12367888888888 5776653 2346777777764 455555
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.49 E-value=1.9e-14 Score=117.11 Aligned_cols=241 Identities=17% Similarity=0.096 Sum_probs=173.9
Q ss_pred CCCCCCcccEEEecCCccc----ccCchHHhcCCCccEEEccCCcCCc----cCCcc-------ccCccCCCeeeccCCc
Q 038877 24 EIPTCPRLVTFLLDGNWIE----EITDGFFRSMSSLRVLSLRRNLALS----KLPSG-------ISNLVSLHHLDLSWTR 88 (298)
Q Consensus 24 ~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~----~~p~~-------~~~l~~L~~L~l~~~~ 88 (298)
....+..++.+++++|.++ ......+.+.+.|+..++++- ..+ .+|+. +-.+++|++++|+.|.
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 3466788999999999887 222333777788999998887 554 33432 4456799999999987
Q ss_pred cc--c---cchhhcCCCcccEEeccCCccCCCCchh-------------hhcCCCcccEEEeeccCCccccccccccccc
Q 038877 89 IR--G---LPQELKALEKLRYLSLEGTRHLSIIPHQ-------------LISGFSKLEVLRLLWCGLWSRKEQEEGSVLY 150 (298)
Q Consensus 89 ~~--~---l~~~~~~l~~L~~L~l~~~~~~~~~~~~-------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 150 (298)
+. . +.+-+.+++.|++|.+.+|.. +....+ .++.-++||.+.+.+|++..
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl-g~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen----------- 171 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGL-GPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN----------- 171 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCC-ChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc-----------
Confidence 65 2 334577889999999999843 322111 24567889999999998743
Q ss_pred cCchhHHHhhcCCCCccEEEEEecCccc--hhhhccccccccceeEEEEeccCCCCcccc----cccccccccceecccC
Q 038877 151 DDAEPLMKELLGLKHLNVLSWSLHSSLA--VQKFLKYPKLLSITQSVGVYFCQSPPLNVL----HLAYMENLQELVILNS 224 (298)
Q Consensus 151 ~~~~~~~~~l~~l~~L~~l~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~ 224 (298)
.+...+...+..++.|+.+.+..++... ...+......+++|++|++..|........ ++..+|+|+.|++++|
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 3456677888899999999999987632 334445567789999999999986433322 4778999999999999
Q ss_pred CcceeeecchhhhhccccccCCcccEEeccCCCCCCchh------hhhhcCCCcEEEeecCcc
Q 038877 225 DLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT------WLVFAQNLKELRIDSCYD 281 (298)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~------~l~~~~~L~~L~l~~c~~ 281 (298)
.+.+-+...+. ..+. ..+|.|+.|.+.+| .++.-. .....|.|+.|++++|..
T Consensus 252 ll~~~Ga~a~~--~al~-~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 252 LLENEGAIAFV--DALK-ESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccHHHHH--HHHh-ccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 98884443331 1222 45999999999999 565432 234589999999999965
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.48 E-value=5.1e-15 Score=122.28 Aligned_cols=239 Identities=20% Similarity=0.133 Sum_probs=164.9
Q ss_pred CccEEEeecCCCcCCCC--CCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCeeec
Q 038877 8 GAKRISLMKTGIQSPSE--IPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHLDL 84 (298)
Q Consensus 8 ~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l 84 (298)
.-..++|.-|.|+.+|. ++.+++|+.|+|++|.|+.|.+.+|..++.|..|.+.++.+++.+|. .|+++..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 34578899999999884 48899999999999999999888899999988887766339999976 6889999999999
Q ss_pred cCCccccc-chhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcc----cccc----------cc----
Q 038877 85 SWTRIRGL-PQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWS----RKEQ----------EE---- 145 (298)
Q Consensus 85 ~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~----~~~~----------~~---- 145 (298)
.-|++.-+ ...+..+++|..|.+.++ ....++.+.+..+..++++++..|.+.- ++.+ .+
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 98888844 467889999999999888 5677777667778888887765544100 0000 00
Q ss_pred ------------------------c----cccccCch-hHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEE
Q 038877 146 ------------------------G----SVLYDDAE-PLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVG 196 (298)
Q Consensus 146 ------------------------~----~~~~~~~~-~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~ 196 (298)
. ........ .-...+..+++|+++++++|....+.. ....-...++.|+
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~--~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED--GAFEGAAELQELY 304 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh--hhhcchhhhhhhh
Confidence 0 00000011 112346677788888887776655432 1122235567777
Q ss_pred EeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCC
Q 038877 197 VYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQ 257 (298)
Q Consensus 197 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 257 (298)
+..|....+....+.++..|++|++.+|.+..+....+ .....|..|.+-.++
T Consensus 305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF--------~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF--------QTLFSLSTLNLLSNP 357 (498)
T ss_pred cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc--------cccceeeeeehccCc
Confidence 77776666666667777788888888888777544444 445666666665543
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.39 E-value=4e-13 Score=102.32 Aligned_cols=142 Identities=27% Similarity=0.325 Sum_probs=39.5
Q ss_pred cCCCcCCCCCCCCCcccEEEecCCcccccCchHHh-cCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccch
Q 038877 16 KTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFR-SMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQ 94 (298)
Q Consensus 16 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~ 94 (298)
.+.|..++...++.++++|++.+|.|+.+.. ++ .+.+|++|++++| .++.+. ++..++.|++|++++|.++.+.+
T Consensus 6 ~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 6 ANMIEQIAQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp ------------------------------S----TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-CH
T ss_pred ccccccccccccccccccccccccccccccc--hhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCcccc
Confidence 3344444445555556666666666654433 33 3556666666666 555553 34556666666666666665544
Q ss_pred hh-cCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEe
Q 038877 95 EL-KALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSL 173 (298)
Q Consensus 95 ~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~ 173 (298)
.+ ..+++|++|++++|.....-.-..++.+++|+.|++.+|.++. ........+..+|+|+.||-..
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~------------~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE------------KKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG------------STTHHHHHHHH-TT-SEETTEE
T ss_pred chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc------------hhhHHHHHHHHcChhheeCCEE
Confidence 33 3456666666666533211111125566666666666666642 1223445555666666666543
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=3.7e-13 Score=112.75 Aligned_cols=212 Identities=20% Similarity=0.196 Sum_probs=149.4
Q ss_pred HhcCCCccEEEccCCcCCccCCc--cccCccCCCeeeccCCccc---ccchhhcCCCcccEEeccCCccCCCCchhhhcC
Q 038877 49 FRSMSSLRVLSLRRNLALSKLPS--GISNLVSLHHLDLSWTRIR---GLPQELKALEKLRYLSLEGTRHLSIIPHQLISG 123 (298)
Q Consensus 49 ~~~~~~L~~L~l~~~~~~~~~p~--~~~~l~~L~~L~l~~~~~~---~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 123 (298)
-.++.+|+.+.++++ .+...+. -...|++++.|++++|-+. .+.....++|+|+.|+++.|....-.....-..
T Consensus 117 Qsn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 117 QSNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 456778888888888 7776653 4567889999999988665 344667889999999998885543333333457
Q ss_pred CCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCC
Q 038877 124 FSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSP 203 (298)
Q Consensus 124 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 203 (298)
+++|+.|.+++|.+. ...+...+..+|+|+.|++..|...... ......++.|+.|++++|...
T Consensus 196 l~~lK~L~l~~CGls--------------~k~V~~~~~~fPsl~~L~L~~N~~~~~~--~~~~~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLS--------------WKDVQWILLTFPSLEVLYLEANEIILIK--ATSTKILQTLQELDLSNNNLI 259 (505)
T ss_pred hhhhheEEeccCCCC--------------HHHHHHHHHhCCcHHHhhhhccccccee--cchhhhhhHHhhccccCCccc
Confidence 888999999999984 3456677778999999999988522222 223445678899999999875
Q ss_pred Cccc-ccccccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCC--CCchhhhhhcCCCcEEEeecC
Q 038877 204 PLNV-LHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQK--AKDLTWLVFAQNLKELRIDSC 279 (298)
Q Consensus 204 ~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~--l~~l~~l~~~~~L~~L~l~~c 279 (298)
+... ..++.+|.|+.|+++.|.+.++..-.... .-....|++|+.|++..++- |..+..+..+++|+.|.+...
T Consensus 260 ~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s--~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 260 DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVES--LDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred ccccccccccccchhhhhccccCcchhcCCCccc--hhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 5543 34778999999999999988732211100 00125789999999999944 555555566777777775543
No 27
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.34 E-value=1.3e-13 Score=114.83 Aligned_cols=266 Identities=20% Similarity=0.228 Sum_probs=170.1
Q ss_pred CccEEEeecCCCcC---CCCC-CCCCcccEEEecCC-cccc-cCchHHhcCCCccEEEccCCcCCccC--CccccCccCC
Q 038877 8 GAKRISLMKTGIQS---PSEI-PTCPRLVTFLLDGN-WIEE-ITDGFFRSMSSLRVLSLRRNLALSKL--PSGISNLVSL 79 (298)
Q Consensus 8 ~L~~L~l~~~~~~~---~~~~-~~~~~L~~L~l~~~-~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~--p~~~~~l~~L 79 (298)
.|+.|+++|+.-.. +..+ ..|++++.|.+.+| .+++ ...++...|++|+++++..|..++.. ......|++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 47778888765333 3323 67888888888888 4542 22344667888888888887455422 2233457888
Q ss_pred CeeeccCC-ccc--ccchhhcCCCcccEEeccCCcc--------------------------CCCCchh-hhcCCCcccE
Q 038877 80 HHLDLSWT-RIR--GLPQELKALEKLRYLSLEGTRH--------------------------LSIIPHQ-LISGFSKLEV 129 (298)
Q Consensus 80 ~~L~l~~~-~~~--~l~~~~~~l~~L~~L~l~~~~~--------------------------~~~~~~~-~~~~l~~L~~ 129 (298)
+++++++| .++ .+......+..++.+...+|.. ++..... +-..+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 88888887 444 3333344455555555555521 1111100 0122344444
Q ss_pred EEeeccCCccccccccccccccCchhHHHhhc-CCCCccEEEEEecCccchhhhccccccccceeEEEEeccCC-CCccc
Q 038877 130 LRLLWCGLWSRKEQEEGSVLYDDAEPLMKELL-GLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQS-PPLNV 207 (298)
Q Consensus 130 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~ 207 (298)
+..+++... .......+. ++.+|+.+.+..+.......+....+.++.|+.+++..|.. .+...
T Consensus 299 l~~s~~t~~--------------~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL 364 (483)
T KOG4341|consen 299 LCYSSCTDI--------------TDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTL 364 (483)
T ss_pred hcccCCCCC--------------chHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhH
Confidence 444444331 233444444 56889999888877655555556677788899998888854 22233
Q ss_pred cccc-ccccccceecccCCcce-eeecchhhhhccccccCCcccEEeccCCCCCCch--hhhhhcCCCcEEEeecCcccc
Q 038877 208 LHLA-YMENLQELVILNSDLEE-MKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDL--TWLVFAQNLKELRIDSCYDVE 283 (298)
Q Consensus 208 ~~l~-~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l--~~l~~~~~L~~L~l~~c~~l~ 283 (298)
..++ ++|.|+.|.+++|...+ .++..+.. ...+...|+.+.+++|+.+++- ..+..+++||.+++.+|..+.
T Consensus 365 ~sls~~C~~lr~lslshce~itD~gi~~l~~----~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 365 ASLSRNCPRLRVLSLSHCELITDEGIRHLSS----SSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred hhhccCCchhccCChhhhhhhhhhhhhhhhh----ccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 3443 58999999999988766 54444421 2367899999999999999984 578899999999999998887
Q ss_pred cccccCcc
Q 038877 284 EIISVDKL 291 (298)
Q Consensus 284 ~~~~~~~~ 291 (298)
+.+...-+
T Consensus 441 k~~i~~~~ 448 (483)
T KOG4341|consen 441 KEAISRFA 448 (483)
T ss_pred hhhhHHHH
Confidence 76644433
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.33 E-value=1.6e-12 Score=99.13 Aligned_cols=130 Identities=27% Similarity=0.321 Sum_probs=56.1
Q ss_pred cccCCCccEEEeecCCCcCCCCCC-CCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccc-cCccCCC
Q 038877 3 VEEWEGAKRISLMKTGIQSPSEIP-TCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGI-SNLVSLH 80 (298)
Q Consensus 3 ~~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~-~~l~~L~ 80 (298)
+-++.+++.|++.+|.|+.+..+. .+.+|+.|++++|.+..+.. +..+++|++|++++| .++.+.+.+ ..+++|+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCC-CCCccccchHHhCCcCC
Confidence 445667999999999999988885 68999999999999998765 788999999999999 898886655 4689999
Q ss_pred eeeccCCcccccc--hhhcCCCcccEEeccCCccCCC--CchhhhcCCCcccEEEeecc
Q 038877 81 HLDLSWTRIRGLP--QELKALEKLRYLSLEGTRHLSI--IPHQLISGFSKLEVLRLLWC 135 (298)
Q Consensus 81 ~L~l~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~ 135 (298)
+|++++|.+..+. ..+..+++|++|++.+|..... .-..++..+|+|+.||-...
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 9999999988554 4578899999999999855432 12344788999999986543
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.23 E-value=8.6e-12 Score=117.39 Aligned_cols=281 Identities=21% Similarity=0.257 Sum_probs=165.7
Q ss_pred cCCCccEEEeecCC--CcCCCC--CCCCCcccEEEecCC-cccccCchHHhcCCCccEEEccCCcCCccCCccccCccCC
Q 038877 5 EWEGAKRISLMKTG--IQSPSE--IPTCPRLVTFLLDGN-WIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSL 79 (298)
Q Consensus 5 ~~~~L~~L~l~~~~--~~~~~~--~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L 79 (298)
.+++|+.|-+..+. +..++. +..++.|++|++++| .+..+|.+ ++.+-+|++|+++++ .++.+|.+++++..|
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDT-GISHLPSGLGNLKKL 620 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCC-CccccchHHHHHHhh
Confidence 45678898888886 555554 588999999999998 56688888 999999999999999 999999999999999
Q ss_pred CeeeccCC-cccccchhhcCCCcccEEeccCCccC-CCCchhhhcCCCcccEEEeeccCCcccccc-----------ccc
Q 038877 80 HHLDLSWT-RIRGLPQELKALEKLRYLSLEGTRHL-SIIPHQLISGFSKLEVLRLLWCGLWSRKEQ-----------EEG 146 (298)
Q Consensus 80 ~~L~l~~~-~~~~l~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-----------~~~ 146 (298)
.+|++..+ .+..++.....+++|++|.+...... +....+-+.++.+|+.+....... ....+ ...
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l 699 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSL 699 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhh
Confidence 99999987 44456666777999999998765311 111111134455555555432221 00000 000
Q ss_pred cccccCchhHHHhhcCCCCccEEEEEecCccchhh-hc-cccc--cccceeEEEEeccCCCCcccccccccccccceecc
Q 038877 147 SVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQK-FL-KYPK--LLSITQSVGVYFCQSPPLNVLHLAYMENLQELVIL 222 (298)
Q Consensus 147 ~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~-~~-~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 222 (298)
..........+..+..+.+|+.|.+..+....... .. .... .++++.++.+.+|.... ...+..-.|+|+.|.+.
T Consensus 700 ~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r-~l~~~~f~~~L~~l~l~ 778 (889)
T KOG4658|consen 700 SIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLR-DLTWLLFAPHLTSLSLV 778 (889)
T ss_pred hhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccc-ccchhhccCcccEEEEe
Confidence 00111223344556667777777777766532111 00 0000 02233333444442211 11123345889999999
Q ss_pred cCCcceeeecchhhhhccc--cccCCcccEE-eccCCCCCCchhhh-hhcCCCcEEEeecCcccccccccC
Q 038877 223 NSDLEEMKIDSAEEVKKLF--RSGFRSLNTV-SVDYCQKAKDLTWL-VFAQNLKELRIDSCYDVEEIISVD 289 (298)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~--~~~~~~L~~L-~l~~c~~l~~l~~l-~~~~~L~~L~l~~c~~l~~~~~~~ 289 (298)
+|...+..+.....-.... .-.|.++..+ .+.+.+.++.+-+. ..++.|+++.+..|+++..+|...
T Consensus 779 ~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~ 849 (889)
T KOG4658|consen 779 SCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLS 849 (889)
T ss_pred cccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCcccc
Confidence 8887773322221000000 1234444444 24444444444332 235568889999999888887553
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=2e-12 Score=108.47 Aligned_cols=130 Identities=22% Similarity=0.171 Sum_probs=64.6
Q ss_pred CCCccEEEeecCCCcCCC---CCCCCCcccEEEecCCcccc--cCchHHhcCCCccEEEccCCcCCccCCc--cccCccC
Q 038877 6 WEGAKRISLMKTGIQSPS---EIPTCPRLVTFLLDGNWIEE--ITDGFFRSMSSLRVLSLRRNLALSKLPS--GISNLVS 78 (298)
Q Consensus 6 ~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~p~--~~~~l~~ 78 (298)
+.+|+.+.+.++.+..++ ....|++++.|++++|-+.. ....+...+++|+.|+++.| .+....+ .-..+++
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhhhhh
Confidence 455666666666555543 23556666666666664431 11223555666666666666 3332111 1123455
Q ss_pred CCeeeccCCccc--ccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCC
Q 038877 79 LHHLDLSWTRIR--GLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGL 137 (298)
Q Consensus 79 L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 137 (298)
|+.|.++.|.++ ++.......|+|..|++..|......... ..-+..|+.|++++|.+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNL 258 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCcc
Confidence 666666666555 33344455566666666555211111110 23344455666665555
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.18 E-value=7e-12 Score=102.40 Aligned_cols=239 Identities=16% Similarity=0.125 Sum_probs=166.5
Q ss_pred cccCCCccEEEeecCCCcC-----C-CCCCCCCcccEEEecCCccc----ccCc------hHHhcCCCccEEEccCCcCC
Q 038877 3 VEEWEGAKRISLMKTGIQS-----P-SEIPTCPRLVTFLLDGNWIE----EITD------GFFRSMSSLRVLSLRRNLAL 66 (298)
Q Consensus 3 ~~~~~~L~~L~l~~~~~~~-----~-~~~~~~~~L~~L~l~~~~~~----~~~~------~~~~~~~~L~~L~l~~~~~~ 66 (298)
+..+..+..+++++|.+.. + +.+..-++|+..+++.-..+ .+|+ .++..+++|+++++++| .+
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN-A~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN-AF 104 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc-cc
Confidence 4567889999999998865 2 23466779999999876433 3332 23667789999999999 66
Q ss_pred c-cCC----ccccCccCCCeeeccCCcccccc--------------hhhcCCCcccEEeccCCccCCCCch----hhhcC
Q 038877 67 S-KLP----SGISNLVSLHHLDLSWTRIRGLP--------------QELKALEKLRYLSLEGTRHLSIIPH----QLISG 123 (298)
Q Consensus 67 ~-~~p----~~~~~l~~L~~L~l~~~~~~~l~--------------~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~ 123 (298)
+ .-+ .-+..+..|++|+|.+|.+.... .....-++|+++...+|+ +...+. ..+..
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATALAEAFQS 183 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHHHHHHHHh
Confidence 5 222 23567889999999999877321 234566789999999884 333332 12566
Q ss_pred CCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccch--hhhccccccccceeEEEEeccC
Q 038877 124 FSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAV--QKFLKYPKLLSITQSVGVYFCQ 201 (298)
Q Consensus 124 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~ 201 (298)
.+.|+.+.++.|.+.. .+.......+..+++|+.|++..|.+..- ..+.......++|+.+++.+|.
T Consensus 184 ~~~leevr~~qN~I~~-----------eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRP-----------EGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred ccccceEEEecccccC-----------chhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 7899999999998854 22345678899999999999999877432 2233333445678999999998
Q ss_pred CCCccccc----c-cccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCC
Q 038877 202 SPPLNVLH----L-AYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKA 259 (298)
Q Consensus 202 ~~~~~~~~----l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 259 (298)
.......+ + ...|.|+.|.+.+|.+..-....+. ..-...|.|+.|++++| .+
T Consensus 253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la----~~~~ek~dL~kLnLngN-~l 310 (382)
T KOG1909|consen 253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALA----ACMAEKPDLEKLNLNGN-RL 310 (382)
T ss_pred cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHH----HHHhcchhhHHhcCCcc-cc
Confidence 65443332 3 3479999999999988762211110 01134799999999999 55
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.09 E-value=6.5e-12 Score=108.68 Aligned_cols=173 Identities=24% Similarity=0.336 Sum_probs=118.6
Q ss_pred CCCccEEEeecCCCcCCC-CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeec
Q 038877 6 WEGAKRISLMKTGIQSPS-EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDL 84 (298)
Q Consensus 6 ~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 84 (298)
|..|..+.++.|.+..+| .+..+..|++++|+.|++..+|.. +..++ |++|-+++| +++.+|..++....|..|+.
T Consensus 97 f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~-lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~ 173 (722)
T KOG0532|consen 97 FVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG-LCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDV 173 (722)
T ss_pred HHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh-hhcCc-ceeEEEecC-ccccCCcccccchhHHHhhh
Confidence 344555566666666655 346677777777777777766665 44444 777777777 77777777777777777777
Q ss_pred cCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCC
Q 038877 85 SWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLK 164 (298)
Q Consensus 85 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 164 (298)
+.|.+..+|..++.+.+|+.|.+..+ ....+|.+ +..+ .|..||+++|.+.. ++-.|..++
T Consensus 174 s~nei~slpsql~~l~slr~l~vrRn-~l~~lp~E-l~~L-pLi~lDfScNkis~----------------iPv~fr~m~ 234 (722)
T KOG0532|consen 174 SKNEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEE-LCSL-PLIRLDFSCNKISY----------------LPVDFRKMR 234 (722)
T ss_pred hhhhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHH-HhCC-ceeeeecccCceee----------------cchhhhhhh
Confidence 77777777777777778887777777 34556665 5544 47888888887744 888899999
Q ss_pred CccEEEEEecCccchhhhccccccccceeEEEEecc
Q 038877 165 HLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFC 200 (298)
Q Consensus 165 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 200 (298)
+|++|.+..|+...-..-.-..+...-+++|+...|
T Consensus 235 ~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 235 HLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 999999998887543321112223344577777776
No 33
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=4.9e-11 Score=95.70 Aligned_cols=211 Identities=18% Similarity=0.136 Sum_probs=142.4
Q ss_pred ccEEEecCCccccc--CchHHhcCCCccEEEccCCcCCcc---CCccccCccCCCeeeccCCcccccchhh-cCCCcccE
Q 038877 31 LVTFLLDGNWIEEI--TDGFFRSMSSLRVLSLRRNLALSK---LPSGISNLVSLHHLDLSWTRIRGLPQEL-KALEKLRY 104 (298)
Q Consensus 31 L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~---~p~~~~~l~~L~~L~l~~~~~~~l~~~~-~~l~~L~~ 104 (298)
+..+-+-++.+... ...+-..+..++.+|+.+| .++. +...+.+++.|++|+++.|.+..--... ....+|+.
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 33455556665522 2233455778888888888 6663 3445667888899999888776221222 35668888
Q ss_pred EeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCC-CCccEEEEEecCccchhhhc
Q 038877 105 LSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGL-KHLNVLSWSLHSSLAVQKFL 183 (298)
Q Consensus 105 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~l~l~~~~~~~~~~~~ 183 (298)
+-+.++...-.-...++..+|+++.|+++.|.... ..........+ +.++++....|....+....
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq-------------~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~ 192 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQ-------------LNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN 192 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhh-------------hccccccccccchhhhhhhcCCcHHHHHHHHH
Confidence 88888744322223347788888999888885421 00111122223 46777778788777777777
Q ss_pred cccccccceeEEEEeccCCCCc-ccccccccccccceecccCCcce-eeecchhhhhccccccCCcccEEeccCCCCCCc
Q 038877 184 KYPKLLSITQSVGVYFCQSPPL-NVLHLAYMENLQELVILNSDLEE-MKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKD 261 (298)
Q Consensus 184 ~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 261 (298)
...+.++++..+.+..|+.... .......+|.+..|+++.+.+.+ ..++.+ .+|++|+.|.+.+.+-+..
T Consensus 193 ~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~L--------n~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 193 KLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDAL--------NGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred hHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHH--------cCCchhheeeccCCccccc
Confidence 7778889999999998876433 33345667888899999998888 677777 7899999999999887766
Q ss_pred hh
Q 038877 262 LT 263 (298)
Q Consensus 262 l~ 263 (298)
+.
T Consensus 265 l~ 266 (418)
T KOG2982|consen 265 LR 266 (418)
T ss_pred cc
Confidence 53
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.01 E-value=1.1e-11 Score=107.21 Aligned_cols=213 Identities=21% Similarity=0.198 Sum_probs=148.9
Q ss_pred EEeecCCCcCCCCC---CCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCc
Q 038877 12 ISLMKTGIQSPSEI---PTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTR 88 (298)
Q Consensus 12 L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 88 (298)
|.|++-.++.+|.. -.+.--...+++.|.+..+|.. +..+-.|..+.+..| .+..+|..++++..|.+++++.|.
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~-~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEE-ACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccccCchH-HHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccch
Confidence 45556566666533 3344455678888888888877 777788888888888 788888888888889999999888
Q ss_pred ccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccE
Q 038877 89 IRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNV 168 (298)
Q Consensus 89 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 168 (298)
+..+|..+..++ |+.|.+++| .++.+|.+ ++..++|..|+.+.|.+. .++..+..+..|+.
T Consensus 133 lS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~-ig~~~tl~~ld~s~nei~----------------slpsql~~l~slr~ 193 (722)
T KOG0532|consen 133 LSHLPDGLCDLP-LKVLIVSNN-KLTSLPEE-IGLLPTLAHLDVSKNEIQ----------------SLPSQLGYLTSLRD 193 (722)
T ss_pred hhcCChhhhcCc-ceeEEEecC-ccccCCcc-cccchhHHHhhhhhhhhh----------------hchHHhhhHHHHHH
Confidence 888888888776 888888887 56778877 778888888888888774 37777888888888
Q ss_pred EEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCCcc
Q 038877 169 LSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSL 248 (298)
Q Consensus 169 l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L 248 (298)
+.+..+....+..-.. .=.|.+|+++.|+ ....+..+..+..|++|-+..|....-+...+. .+-..-.
T Consensus 194 l~vrRn~l~~lp~El~----~LpLi~lDfScNk-is~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~------kGkVHIF 262 (722)
T KOG0532|consen 194 LNVRRNHLEDLPEELC----SLPLIRLDFSCNK-ISYLPVDFRKMRHLQVLQLENNPLQSPPAQICE------KGKVHIF 262 (722)
T ss_pred HHHhhhhhhhCCHHHh----CCceeeeecccCc-eeecchhhhhhhhheeeeeccCCCCCChHHHHh------ccceeee
Confidence 8888776654432111 1235778887774 233344567778888888888877663322221 1233444
Q ss_pred cEEeccCC
Q 038877 249 NTVSVDYC 256 (298)
Q Consensus 249 ~~L~l~~c 256 (298)
++|++.-|
T Consensus 263 KyL~~qA~ 270 (722)
T KOG0532|consen 263 KYLSTQAC 270 (722)
T ss_pred eeecchhc
Confidence 55666655
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.00 E-value=3.7e-10 Score=99.04 Aligned_cols=105 Identities=34% Similarity=0.468 Sum_probs=49.5
Q ss_pred CCCcccEEEecCCcccccCchHHhcCC-CccEEEccCCcCCccCCccccCccCCCeeeccCCcccccchhhcCCCcccEE
Q 038877 27 TCPRLVTFLLDGNWIEEITDGFFRSMS-SLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYL 105 (298)
Q Consensus 27 ~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L 105 (298)
..+.++.|.+.++.+.+++.. ..... +|+.|+++++ .+..+|..+..+++|+.|+++.|.+..++...+..++|+.+
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred cccceeEEecCCcccccCccc-cccchhhccccccccc-chhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 334455555555554444443 23332 4555555555 44444444445555555555555555554444445555555
Q ss_pred eccCCccCCCCchhhhcCCCcccEEEeecc
Q 038877 106 SLEGTRHLSIIPHQLISGFSKLEVLRLLWC 135 (298)
Q Consensus 106 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 135 (298)
+++++ .+..+|.. +..+..|+.+.+.+|
T Consensus 192 ~ls~N-~i~~l~~~-~~~~~~L~~l~~~~N 219 (394)
T COG4886 192 DLSGN-KISDLPPE-IELLSALEELDLSNN 219 (394)
T ss_pred eccCC-ccccCchh-hhhhhhhhhhhhcCC
Confidence 55554 33444442 233334555555544
No 36
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.3e-11 Score=98.88 Aligned_cols=182 Identities=23% Similarity=0.187 Sum_probs=116.5
Q ss_pred CCCeeeccCCccc--ccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchh
Q 038877 78 SLHHLDLSWTRIR--GLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEP 155 (298)
Q Consensus 78 ~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 155 (298)
.||++|+++..++ .+...+.++.+|+.|.+.+....+.+... ++.=.+|+.++++.+.-.+ ...
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t-------------~n~ 251 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFT-------------ENA 251 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccccccc-------------hhH
Confidence 4788888877665 56666778888888888887555555554 6667778888887764322 334
Q ss_pred HHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCC--CCcccccc-cccccccceecccCCcce-eee
Q 038877 156 LMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQS--PPLNVLHL-AYMENLQELVILNSDLEE-MKI 231 (298)
Q Consensus 156 ~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~l-~~l~~L~~L~l~~~~~~~-~~~ 231 (298)
..--+++|+.|..|+++.|......---..+.....+++|+++++.. .......+ ..+|+|..|++++|.... -..
T Consensus 252 ~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~ 331 (419)
T KOG2120|consen 252 LQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF 331 (419)
T ss_pred HHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHH
Confidence 45566778888888888766532211111233445677888887752 11222223 457888888888887666 222
Q ss_pred cchhhhhccccccCCcccEEeccCCCCCCch--hhhhhcCCCcEEEeecCcc
Q 038877 232 DSAEEVKKLFRSGFRSLNTVSVDYCQKAKDL--TWLVFAQNLKELRIDSCYD 281 (298)
Q Consensus 232 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l--~~l~~~~~L~~L~l~~c~~ 281 (298)
..+ -.|+.|++|.++.|..+--- -.+..+|.|.+|++.||-.
T Consensus 332 ~~~--------~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 332 QEF--------FKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred HHH--------HhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 222 36888888888888655421 1245688888888888844
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.97 E-value=4.4e-10 Score=98.56 Aligned_cols=176 Identities=25% Similarity=0.287 Sum_probs=137.9
Q ss_pred cccCCCccEEEeecCCCcCCCCCCCCC--cccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCC
Q 038877 3 VEEWEGAKRISLMKTGIQSPSEIPTCP--RLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLH 80 (298)
Q Consensus 3 ~~~~~~L~~L~l~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 80 (298)
+...+.+..+++.++.++.++...... +|+.|++++|.+..++.. +..+++|+.|+++.| .+..+|...+...+|+
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCc-hhhhhhhhhhhhhhhh
Confidence 344567899999999999988775543 899999999999888644 889999999999999 9999988766889999
Q ss_pred eeeccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhh
Q 038877 81 HLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKEL 160 (298)
Q Consensus 81 ~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 160 (298)
.|++++|.+..+|........|+.+.+++++....... +.++.++..+.+.++++.. .+..+
T Consensus 190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~--~~~~~~l~~l~l~~n~~~~----------------~~~~~ 251 (394)
T COG4886 190 NLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSS--LSNLKNLSGLELSNNKLED----------------LPESI 251 (394)
T ss_pred heeccCCccccCchhhhhhhhhhhhhhcCCcceecchh--hhhcccccccccCCceeee----------------ccchh
Confidence 99999999999998877788899999999854333333 7888888888887777632 25666
Q ss_pred cCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCC
Q 038877 161 LGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQS 202 (298)
Q Consensus 161 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 202 (298)
..++.++.++++.+....+.. ......++.|+++++..
T Consensus 252 ~~l~~l~~L~~s~n~i~~i~~----~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 252 GNLSNLETLDLSNNQISSISS----LGSLTNLRELDLSGNSL 289 (394)
T ss_pred ccccccceecccccccccccc----ccccCccCEEeccCccc
Confidence 677778888888877665554 22335667777777643
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.89 E-value=2.2e-10 Score=92.23 Aligned_cols=128 Identities=20% Similarity=0.215 Sum_probs=74.1
Q ss_pred CcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccchhhcCCCcccEEecc
Q 038877 29 PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLE 108 (298)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~ 108 (298)
..|+++++++|.|+.+.++ +.-.|.+++|+++.| .+..+-. ++.+++|+.|++++|.+.++...-.++-+.+.|.+.
T Consensus 284 q~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDES-VKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccchhhhhhh-hhhccceeEEecccc-ceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 3466666666666655555 555666666666666 5554432 556666666666666666554444455556666666
Q ss_pred CCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCc
Q 038877 109 GTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSS 176 (298)
Q Consensus 109 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~ 176 (298)
+| .+..+.. ++++.+|..|++++|++.. .+-...+++++-|+.+.+.+|+.
T Consensus 361 ~N-~iE~LSG--L~KLYSLvnLDl~~N~Ie~--------------ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 361 QN-KIETLSG--LRKLYSLVNLDLSSNQIEE--------------LDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hh-hHhhhhh--hHhhhhheeccccccchhh--------------HHHhcccccccHHHHHhhcCCCc
Confidence 65 3333332 5666666666666666631 22334556666666666665554
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.86 E-value=5.6e-10 Score=89.93 Aligned_cols=198 Identities=17% Similarity=0.166 Sum_probs=131.8
Q ss_pred ccCCCccEEEeecCCCcCCCCC-CCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCc-CCc--cCCccccCccCC
Q 038877 4 EEWEGAKRISLMKTGIQSPSEI-PTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNL-ALS--KLPSGISNLVSL 79 (298)
Q Consensus 4 ~~~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~--~~p~~~~~l~~L 79 (298)
.-+.+|..+.++.+.-..+.++ ..=|.|+++......+...+. +-....+. |..... ... .+-..+.....|
T Consensus 211 ~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~--l~pe~~~~--D~~~~E~~t~~G~~~~~~dTWq~L 286 (490)
T KOG1259|consen 211 NAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPS--LLPETILA--DPSGSEPSTSNGSALVSADTWQEL 286 (490)
T ss_pred HHhhhhheeeeeccchhheeceeecCchhheeeeeccccccccc--ccchhhhc--CccCCCCCccCCceEEecchHhhh
Confidence 3467788888888765555555 445778888777665543222 11112222 222210 111 111123335678
Q ss_pred CeeeccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHh
Q 038877 80 HHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKE 159 (298)
Q Consensus 80 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (298)
+++++++|.++.+.+++.-+|+++.|++++| .+..+.. +..+++|+.|++++|.+.. ....
T Consensus 287 telDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n--La~L~~L~~LDLS~N~Ls~----------------~~Gw 347 (490)
T KOG1259|consen 287 TELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQN--LAELPQLQLLDLSGNLLAE----------------CVGW 347 (490)
T ss_pred hhccccccchhhhhhhhhhccceeEEecccc-ceeeehh--hhhcccceEeecccchhHh----------------hhhh
Confidence 9999999999988888888999999999998 4445544 7889999999999988743 3333
Q ss_pred hcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCC-cccccccccccccceecccCCcce
Q 038877 160 LLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPP-LNVLHLAYMENLQELVILNSDLEE 228 (298)
Q Consensus 160 l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~ 228 (298)
-..+.++++|.+..|...+...+.+. =+|..|++.+|.+.. .....++++|.|+.+.+.+|.+..
T Consensus 348 h~KLGNIKtL~La~N~iE~LSGL~KL----YSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 348 HLKLGNIKTLKLAQNKIETLSGLRKL----YSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred HhhhcCEeeeehhhhhHhhhhhhHhh----hhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 44677888999988876655544332 345788888887643 334568999999999999998766
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.6e-10 Score=92.76 Aligned_cols=198 Identities=18% Similarity=0.131 Sum_probs=126.6
Q ss_pred CCccEEEccCCcCCc--cCCccccCccCCCeeeccCCccc-ccchhhcCCCcccEEeccCCccCCCCch-hhhcCCCccc
Q 038877 53 SSLRVLSLRRNLALS--KLPSGISNLVSLHHLDLSWTRIR-GLPQELKALEKLRYLSLEGTRHLSIIPH-QLISGFSKLE 128 (298)
Q Consensus 53 ~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~ 128 (298)
..|+++|+++. .++ .+-..+..|.+|+.|.+.++.+. .+...+..-.+|+.++++.|..+++... -++.+++.|.
T Consensus 185 sRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 45777888777 554 33345677788888888887776 5556677777888888888866555432 2357788888
Q ss_pred EEEeeccCCccccccccccccccCchhHHHhhcCC-CCccEEEEEecCcc-chhhhccccccccceeEEEEeccCC-CCc
Q 038877 129 VLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGL-KHLNVLSWSLHSSL-AVQKFLKYPKLLSITQSVGVYFCQS-PPL 205 (298)
Q Consensus 129 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~l~l~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~-~~~ 205 (298)
.|+++.|.+.. ..+-....+. +.|..|+++++... ....+....+.++++..|++++|-+ .+-
T Consensus 264 ~LNlsWc~l~~--------------~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~ 329 (419)
T KOG2120|consen 264 ELNLSWCFLFT--------------EKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND 329 (419)
T ss_pred hcCchHhhccc--------------hhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch
Confidence 88888887632 1122222222 56777777765531 1224445567788888888888764 333
Q ss_pred ccccccccccccceecccCCcce-eeecchhhhhccccccCCcccEEeccCCCCCCchhh-hhhcCCCcE
Q 038877 206 NVLHLAYMENLQELVILNSDLEE-MKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTW-LVFAQNLKE 273 (298)
Q Consensus 206 ~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-l~~~~~L~~ 273 (298)
....+.+++.|+.|.++.|-... -.+-.+ ...|.|.+|++.+|..=+.+.. ...+|+|+.
T Consensus 330 ~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l--------~s~psl~yLdv~g~vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 330 CFQEFFKFNYLQHLSLSRCYDIIPETLLEL--------NSKPSLVYLDVFGCVSDTTMELLKEMLSHLKI 391 (419)
T ss_pred HHHHHHhcchheeeehhhhcCCChHHeeee--------ccCcceEEEEeccccCchHHHHHHHhCccccc
Confidence 44457788889999888886544 111122 5778999999998844333432 345677663
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.83 E-value=4.2e-09 Score=66.19 Aligned_cols=59 Identities=36% Similarity=0.518 Sum_probs=32.8
Q ss_pred CcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCC-ccccCccCCCeeeccCCc
Q 038877 29 PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLP-SGISNLVSLHHLDLSWTR 88 (298)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~ 88 (298)
|+|++|++++|.+..++..+|..+++|++|++++| .+..++ ..|.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34555666666555555544555666666666655 555443 345555555555555553
No 42
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.78 E-value=1.1e-08 Score=81.51 Aligned_cols=216 Identities=18% Similarity=0.083 Sum_probs=148.6
Q ss_pred CCCCcccEEEecCCcccc----cCchHHhcCCCccEEEccCCcCCcc----CC-------ccccCccCCCeeeccCCccc
Q 038877 26 PTCPRLVTFLLDGNWIEE----ITDGFFRSMSSLRVLSLRRNLALSK----LP-------SGISNLVSLHHLDLSWTRIR 90 (298)
Q Consensus 26 ~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~p-------~~~~~l~~L~~L~l~~~~~~ 90 (298)
..+..++.+++++|.|+. .....+..-.+|++.+++.- +.+. ++ +.+..|++|+..+++.|.+.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 457889999999998871 11223666788999998877 5542 22 34567899999999999776
Q ss_pred -ccc----hhhcCCCcccEEeccCCccCCCCchhh-------------hcCCCcccEEEeeccCCccccccccccccccC
Q 038877 91 -GLP----QELKALEKLRYLSLEGTRHLSIIPHQL-------------ISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDD 152 (298)
Q Consensus 91 -~l~----~~~~~l~~L~~L~l~~~~~~~~~~~~~-------------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 152 (298)
..| ..+++.+.|.+|.+++| ..+.+..+- .++-|.|+.+.+..|++.. .+
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-----------gs 173 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-----------GS 173 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-----------Cc
Confidence 443 45788899999999998 334333211 3467889999999998843 22
Q ss_pred chhHHHhhcCCCCccEEEEEecCccc--hhh-hccccccccceeEEEEeccCCCCcccc----cccccccccceecccCC
Q 038877 153 AEPLMKELLGLKHLNVLSWSLHSSLA--VQK-FLKYPKLLSITQSVGVYFCQSPPLNVL----HLAYMENLQELVILNSD 225 (298)
Q Consensus 153 ~~~~~~~l~~l~~L~~l~l~~~~~~~--~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~ 225 (298)
.......+.+...|+.+.+..|+... +.. .......+++|+.|+++.|........ ++..++.|+.|.+.+|-
T Consensus 174 ~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 174 KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 34455667777899999999988632 111 111234578899999999986443332 46778999999999998
Q ss_pred cceeeecchhhhhccccccCCcccEEeccCC
Q 038877 226 LEEMKIDSAEEVKKLFRSGFRSLNTVSVDYC 256 (298)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 256 (298)
....+...+. ..+....+|+|+.|....+
T Consensus 254 ls~~G~~~v~--~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 254 LSNEGVKSVL--RRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred hccccHHHHH--HHhhhhcCCCccccccchh
Confidence 8774444331 2233356788888877766
No 43
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.77 E-value=4.3e-10 Score=94.15 Aligned_cols=252 Identities=17% Similarity=0.154 Sum_probs=167.3
Q ss_pred ccCCCccEEEeecCC-CcC--CCCC-CCCCcccEEEecCC-cccc-cCchHHhcCCCccEEEccCCcCCcc--CCccccC
Q 038877 4 EEWEGAKRISLMKTG-IQS--PSEI-PTCPRLVTFLLDGN-WIEE-ITDGFFRSMSSLRVLSLRRNLALSK--LPSGISN 75 (298)
Q Consensus 4 ~~~~~L~~L~l~~~~-~~~--~~~~-~~~~~L~~L~l~~~-~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~--~p~~~~~ 75 (298)
..|+++++|.+.++. +++ .-.+ ..|+.|+.|++..| .+++ ........+++|+++++++|..++. +-....+
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 457888888888765 333 1122 66888888888886 5552 2233466788888888888855542 1112233
Q ss_pred ccCCCeeeccCC---------------------------ccc--ccchhhcCCCcccEEeccCCccCCCCch-hhhcCCC
Q 038877 76 LVSLHHLDLSWT---------------------------RIR--GLPQELKALEKLRYLSLEGTRHLSIIPH-QLISGFS 125 (298)
Q Consensus 76 l~~L~~L~l~~~---------------------------~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~ 125 (298)
+..++.+.+.+| .++ .+...-..+..|++++.+++...+..+- ....+.+
T Consensus 241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~ 320 (483)
T KOG4341|consen 241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCH 320 (483)
T ss_pred chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCC
Confidence 344444433332 122 1112223467889999998866554442 2245789
Q ss_pred cccEEEeeccCCccccccccccccccCchhHHHhh-cCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCC-C
Q 038877 126 KLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKEL-LGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQS-P 203 (298)
Q Consensus 126 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~ 203 (298)
+|+.+.+.+|+..+ +.-+..+ ..+++|+.+++..+.......+......++.++++.++.|.. .
T Consensus 321 ~L~~l~l~~c~~fs--------------d~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~it 386 (483)
T KOG4341|consen 321 NLQVLELSGCQQFS--------------DRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELIT 386 (483)
T ss_pred ceEEEeccccchhh--------------hhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhh
Confidence 99999999987522 1122333 367899999999888766667888888999999999998864 3
Q ss_pred Ccccccc----cccccccceecccCCcce-eeecchhhhhccccccCCcccEEeccCCCCCCchh---hhhhcCCCcEEE
Q 038877 204 PLNVLHL----AYMENLQELVILNSDLEE-MKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT---WLVFAQNLKELR 275 (298)
Q Consensus 204 ~~~~~~l----~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~---~l~~~~~L~~L~ 275 (298)
+.....+ ..+..|+.+.++++.... ...+++ ..++.|+.+++-+|..++.-+ +-.++|+++...
T Consensus 387 D~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l--------~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 387 DEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL--------SICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred hhhhhhhhhccccccccceeeecCCCCchHHHHHHH--------hhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 3322222 346789999999999888 666776 678999999999998888743 345688877654
Q ss_pred ee
Q 038877 276 ID 277 (298)
Q Consensus 276 l~ 277 (298)
..
T Consensus 459 ~~ 460 (483)
T KOG4341|consen 459 YF 460 (483)
T ss_pred hc
Confidence 43
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.68 E-value=8.4e-08 Score=88.55 Aligned_cols=103 Identities=22% Similarity=0.406 Sum_probs=53.4
Q ss_pred ccEEEecCCccc-ccCchHHhcCCCccEEEccCCcCCc-cCCccccCccCCCeeeccCCccc-ccchhhcCCCcccEEec
Q 038877 31 LVTFLLDGNWIE-EITDGFFRSMSSLRVLSLRRNLALS-KLPSGISNLVSLHHLDLSWTRIR-GLPQELKALEKLRYLSL 107 (298)
Q Consensus 31 L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l 107 (298)
++.|+++++.+. .+|.. +..+++|+.|++++| .+. .+|..++.+++|+.|++++|.+. .+|..++.+++|+.|++
T Consensus 420 v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCccccCCHH-HhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 455555555554 34433 555555555555555 333 45555555555555555555554 45555555555555555
Q ss_pred cCCccCCCCchhhhcC-CCcccEEEeeccC
Q 038877 108 EGTRHLSIIPHQLISG-FSKLEVLRLLWCG 136 (298)
Q Consensus 108 ~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~ 136 (298)
++|...+.+|.. ++. ..++..+++.+|.
T Consensus 498 s~N~l~g~iP~~-l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLSGRVPAA-LGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCcccccCChH-HhhccccCceEEecCCc
Confidence 555444455543 322 2334445554443
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.63 E-value=3.3e-08 Score=62.07 Aligned_cols=57 Identities=23% Similarity=0.345 Sum_probs=52.2
Q ss_pred CCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCC
Q 038877 7 EGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRN 63 (298)
Q Consensus 7 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 63 (298)
++|+.|++++|.+..+| .+..+++|++|++++|.+..+++..|..+++|+.|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 57899999999999977 3488999999999999999888877999999999999998
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=1.9e-08 Score=81.11 Aligned_cols=226 Identities=15% Similarity=0.103 Sum_probs=140.0
Q ss_pred EEEeecCCCcCCCCC----CCCCcccEEEecCCcccccC--chHHhcCCCccEEEccCCcCCc-cCCccccCccCCCeee
Q 038877 11 RISLMKTGIQSPSEI----PTCPRLVTFLLDGNWIEEIT--DGFFRSMSSLRVLSLRRNLALS-KLPSGISNLVSLHHLD 83 (298)
Q Consensus 11 ~L~l~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~ 83 (298)
.+.+.++.|....+. ..+++++++++.+|.++++. .....++|.|++|+++.| .+. .+..--....+|+.|.
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~lp~p~~nl~~lV 127 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKSLPLPLKNLRVLV 127 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCCccccCcccccceEEEE
Confidence 455556666553322 67899999999999988433 234889999999999999 554 2211114678999999
Q ss_pred ccCCccc--ccchhhcCCCcccEEeccCCccCCC-CchhhhcC-CCcccEEEeeccCCccccccccccccccCchhHHHh
Q 038877 84 LSWTRIR--GLPQELKALEKLRYLSLEGTRHLSI-IPHQLISG-FSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKE 159 (298)
Q Consensus 84 l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (298)
+.++.+. .....+..+|.++.|.++.|+.-.- +...-+.. -+.+++++...|.... ......-
T Consensus 128 LNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~-------------w~~~~~l 194 (418)
T KOG2982|consen 128 LNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQL-------------WLNKNKL 194 (418)
T ss_pred EcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHH-------------HHHHHhH
Confidence 9988655 5666788899999998888732110 00100111 2357777777765421 1122233
Q ss_pred hcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCC-CCcccccccccccccceecccCCcce-eeecchhhh
Q 038877 160 LLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQS-PPLNVLHLAYMENLQELVILNSDLEE-MKIDSAEEV 237 (298)
Q Consensus 160 l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~ 237 (298)
-..++++..+.+..++..+...- +.....+.+.-|.++.+.. ......++.++|.|+.|.+.++.+.+ +.-..-
T Consensus 195 ~r~Fpnv~sv~v~e~PlK~~s~e-k~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~er--- 270 (418)
T KOG2982|consen 195 SRIFPNVNSVFVCEGPLKTESSE-KGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGER--- 270 (418)
T ss_pred HhhcccchheeeecCcccchhhc-ccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcc---
Confidence 33468888888888765433321 2223334555667776665 34555678999999999999998876 321111
Q ss_pred hccccccCCcccEEecc
Q 038877 238 KKLFRSGFRSLNTVSVD 254 (298)
Q Consensus 238 ~~~~~~~~~~L~~L~l~ 254 (298)
.++-...+++++.|+=+
T Consensus 271 r~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 271 RFLLIARLTKVQVLNGS 287 (418)
T ss_pred eEEEEeeccceEEecCc
Confidence 11222456777766533
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.60 E-value=5.4e-09 Score=92.10 Aligned_cols=103 Identities=25% Similarity=0.382 Sum_probs=48.2
Q ss_pred ccCCCccEEEeecCCCcCCCC-CCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCee
Q 038877 4 EEWEGAKRISLMKTGIQSPSE-IPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHL 82 (298)
Q Consensus 4 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 82 (298)
..+.+|..+++.+|.+..+.. +..+++|++|++++|.|+.+.. +..+..|+.|++.+| .+..+.. +..+..|+.+
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N-~i~~~~~-~~~l~~L~~l 167 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGN-LISDISG-LESLKSLKLL 167 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccC-cchhccC-Cccchhhhcc
Confidence 334445555555555555444 4445555555555555544443 344444555555555 4443322 2334455555
Q ss_pred eccCCcccccchh-hcCCCcccEEeccCC
Q 038877 83 DLSWTRIRGLPQE-LKALEKLRYLSLEGT 110 (298)
Q Consensus 83 ~l~~~~~~~l~~~-~~~l~~L~~L~l~~~ 110 (298)
++++|.+..+... ...+.+++.+.+.++
T Consensus 168 ~l~~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 168 DLSYNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred cCCcchhhhhhhhhhhhccchHHHhccCC
Confidence 5555544433322 244444444444444
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.60 E-value=3.4e-10 Score=100.97 Aligned_cols=175 Identities=18% Similarity=0.183 Sum_probs=118.0
Q ss_pred cccCCCccEEEeecCCCcCCCCCCC-CCcccEEEecCC--c--------ccccCchHHhcCCCccEEEccCCcCCccCCc
Q 038877 3 VEEWEGAKRISLMKTGIQSPSEIPT-CPRLVTFLLDGN--W--------IEEITDGFFRSMSSLRVLSLRRNLALSKLPS 71 (298)
Q Consensus 3 ~~~~~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~--~--------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~ 71 (298)
|..+..||+|-+.++++....++.. -.+|++|...+. . ++++..+ .....|.+.+.++| .+..+-.
T Consensus 105 ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns--~~Wn~L~~a~fsyN-~L~~mD~ 181 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNS--PVWNKLATASFSYN-RLVLMDE 181 (1096)
T ss_pred eccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccc--hhhhhHhhhhcchh-hHHhHHH
Confidence 5667788888888887766444422 234555543332 1 1122221 12345777777888 6766666
Q ss_pred cccCccCCCeeeccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcccccccccccccc
Q 038877 72 GISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYD 151 (298)
Q Consensus 72 ~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 151 (298)
++.-++.|+.|+|++|++.... .+..+++|++||+++| .+..+|.-...++. |..|.+++|.++
T Consensus 182 SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrnN~l~------------- 245 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRNNALT------------- 245 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhh-heeeeecccHHH-------------
Confidence 7777888999999999888765 7788899999999988 56677753233444 888999888773
Q ss_pred CchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccC
Q 038877 152 DAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQ 201 (298)
Q Consensus 152 ~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 201 (298)
-...+.++++|+.||+++|-.....++...... ..|+.|++.+|+
T Consensus 246 ----tL~gie~LksL~~LDlsyNll~~hseL~pLwsL-s~L~~L~LeGNP 290 (1096)
T KOG1859|consen 246 ----TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSL-SSLIVLWLEGNP 290 (1096)
T ss_pred ----hhhhHHhhhhhhccchhHhhhhcchhhhHHHHH-HHHHHHhhcCCc
Confidence 466777888889999988776655554444333 667888888886
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.55 E-value=5.7e-09 Score=91.92 Aligned_cols=128 Identities=29% Similarity=0.322 Sum_probs=97.9
Q ss_pred cCCCccEEEeecCCCcCCC-CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeee
Q 038877 5 EWEGAKRISLMKTGIQSPS-EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLD 83 (298)
Q Consensus 5 ~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 83 (298)
.+..++.+++..+.+..+. .+..+.+|+.|++.+|.+..+... +..+.+|++|++++| .++.+. ++..+..|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheecccc-cccccc-chhhccchhhhe
Confidence 3556667777777777733 468889999999999988877664 678999999999999 888774 366777899999
Q ss_pred ccCCcccccchhhcCCCcccEEeccCCccCCCCch-hhhcCCCcccEEEeeccCCc
Q 038877 84 LSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPH-QLISGFSKLEVLRLLWCGLW 138 (298)
Q Consensus 84 l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~ 138 (298)
+.+|.+..+. .+..++.|+.++++++.. ..+.. . ...+.+++.+.+.+|.+.
T Consensus 147 l~~N~i~~~~-~~~~l~~L~~l~l~~n~i-~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 147 LSGNLISDIS-GLESLKSLKLLDLSYNRI-VDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred eccCcchhcc-CCccchhhhcccCCcchh-hhhhhhh-hhhccchHHHhccCCchh
Confidence 9999888764 344588999999999843 44443 2 377888888888888763
No 50
>PLN03150 hypothetical protein; Provisional
Probab=98.52 E-value=3e-07 Score=84.92 Aligned_cols=82 Identities=24% Similarity=0.376 Sum_probs=50.1
Q ss_pred CCeeeccCCccc-ccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHH
Q 038877 79 LHHLDLSWTRIR-GLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLM 157 (298)
Q Consensus 79 L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (298)
++.|+|+++.+. .+|..++.+++|+.|++++|...+.+|.. ++.+++|+.|++++|.+ ...++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~l---------------sg~iP 483 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSF---------------NGSIP 483 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCC---------------CCCCc
Confidence 555666666555 55566666666666666666554555554 56666666666666666 33455
Q ss_pred HhhcCCCCccEEEEEecCc
Q 038877 158 KELLGLKHLNVLSWSLHSS 176 (298)
Q Consensus 158 ~~l~~l~~L~~l~l~~~~~ 176 (298)
..+..+++|+.|+++.|..
T Consensus 484 ~~l~~L~~L~~L~Ls~N~l 502 (623)
T PLN03150 484 ESLGQLTSLRILNLNGNSL 502 (623)
T ss_pred hHHhcCCCCCEEECcCCcc
Confidence 5666666666666666554
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.28 E-value=8.3e-08 Score=68.69 Aligned_cols=107 Identities=18% Similarity=0.266 Sum_probs=76.4
Q ss_pred EEEeecCCCcCCCC----CCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccC
Q 038877 11 RISLMKTGIQSPSE----IPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSW 86 (298)
Q Consensus 11 ~L~l~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 86 (298)
.++++.|++-.+++ +....+|...++++|.+.+.|+.+...++.++.+++..| .++.+|..+..++.|+.|+++.
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRF 109 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhccccc
Confidence 34555555444332 256667777888888887777776666778888888888 7888887788888888888888
Q ss_pred CcccccchhhcCCCcccEEeccCCccCCCCchh
Q 038877 87 TRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQ 119 (298)
Q Consensus 87 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~ 119 (298)
|.+...|+.+..+.++..|+..++ ....++..
T Consensus 110 N~l~~~p~vi~~L~~l~~Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 110 NPLNAEPRVIAPLIKLDMLDSPEN-ARAEIDVD 141 (177)
T ss_pred CccccchHHHHHHHhHHHhcCCCC-ccccCcHH
Confidence 888877777777777888877766 34555543
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.25 E-value=2.9e-07 Score=85.19 Aligned_cols=107 Identities=27% Similarity=0.324 Sum_probs=68.7
Q ss_pred CCccEEEccCCcCCc-cCCccccC-ccCCCeeeccCCccc--ccchhhcCCCcccEEeccCCccCCCCchhhhcCCCccc
Q 038877 53 SSLRVLSLRRNLALS-KLPSGISN-LVSLHHLDLSWTRIR--GLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLE 128 (298)
Q Consensus 53 ~~L~~L~l~~~~~~~-~~p~~~~~-l~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 128 (298)
.+|+.|++++..... ..|..++. +|.|+.|.+.+-.+. ++.....+.++|..||++++ .++.+ .+ ++++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~G-IS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SG-ISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HH-HhccccHH
Confidence 567777777764333 22333333 677888877775443 44455667778888888877 34444 33 77788888
Q ss_pred EEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCc
Q 038877 129 VLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSS 176 (298)
Q Consensus 129 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~ 176 (298)
.|.+.+-.+. .......+..+++|+.||+++...
T Consensus 199 ~L~mrnLe~e--------------~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 199 VLSMRNLEFE--------------SYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred HHhccCCCCC--------------chhhHHHHhcccCCCeeecccccc
Confidence 8877766653 234556677788888888877554
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.22 E-value=2.6e-06 Score=65.19 Aligned_cols=125 Identities=19% Similarity=0.249 Sum_probs=86.9
Q ss_pred cEEEeecCCCcCCCCC-CCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccC-ccCCCeeeccCC
Q 038877 10 KRISLMKTGIQSPSEI-PTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISN-LVSLHHLDLSWT 87 (298)
Q Consensus 10 ~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~-l~~L~~L~l~~~ 87 (298)
+.+++.+..+..+..+ ....+...++|++|.+..++. +..++.|.+|.+++| .+..+.+.+.. +++|+.|.+.+|
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred cccccccccccchhhccccccccceecccccchhhccc--CCCccccceEEecCC-cceeeccchhhhccccceEEecCc
Confidence 3455555555544444 345678888899888776655 778888999999998 88877554544 567899999988
Q ss_pred cccccc--hhhcCCCcccEEeccCCccCC--CCchhhhcCCCcccEEEeeccCC
Q 038877 88 RIRGLP--QELKALEKLRYLSLEGTRHLS--IIPHQLISGFSKLEVLRLLWCGL 137 (298)
Q Consensus 88 ~~~~l~--~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~ 137 (298)
.+.++. ..+..+|+|+.|.+-+|.... ..-..++..+|+|+.||+.....
T Consensus 99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 887554 346778888888887763221 11223477899999999887654
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.22 E-value=7.4e-07 Score=82.53 Aligned_cols=129 Identities=21% Similarity=0.271 Sum_probs=86.6
Q ss_pred CCccEEEeecCCCcC--CC-CC-CCCCcccEEEecCCccc-ccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCe
Q 038877 7 EGAKRISLMKTGIQS--PS-EI-PTCPRLVTFLLDGNWIE-EITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHH 81 (298)
Q Consensus 7 ~~L~~L~l~~~~~~~--~~-~~-~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 81 (298)
.+|++|+++|...-. .+ .+ ..+|.|+.|.+.+-.+. +-......++++|..||++++ .++.+ .+++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHH
Confidence 467888888754221 32 23 56888888888887554 222334677888888898888 78777 67888888888
Q ss_pred eeccCCcccccc--hhhcCCCcccEEeccCCccCCCC--chhh---hcCCCcccEEEeeccCC
Q 038877 82 LDLSWTRIRGLP--QELKALEKLRYLSLEGTRHLSII--PHQL---ISGFSKLEVLRLLWCGL 137 (298)
Q Consensus 82 L~l~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~--~~~~---~~~l~~L~~L~l~~~~~ 137 (298)
|.+.+-.+.... ..+.++++|++||++.......- .... -..+|+||.||++++.+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 888765555322 34677888888888876433221 1100 13488888888888777
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.19 E-value=1.9e-08 Score=90.17 Aligned_cols=127 Identities=21% Similarity=0.229 Sum_probs=86.1
Q ss_pred CCCccEEEeecCCCcCCC-CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCcc-ccCccCCCeee
Q 038877 6 WEGAKRISLMKTGIQSPS-EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSG-ISNLVSLHHLD 83 (298)
Q Consensus 6 ~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~ 83 (298)
|..|...++++|.+..+. .+.-++.++.|+|++|.+.++.. +..+++|++||+++| .+..+|.. ...| .|+.|+
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~--Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDN--LRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHH--HHhcccccccccccc-hhccccccchhhh-hheeee
Confidence 455666777777766654 33556788888888887776552 777888888888888 77777653 2223 388888
Q ss_pred ccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCC
Q 038877 84 LSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGL 137 (298)
Q Consensus 84 l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 137 (298)
+++|.++.+. ++.++.+|+.||+++|-..+.-.-..+..+..|+.|.+.||.+
T Consensus 239 lrnN~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 239 LRNNALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ecccHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 8888777663 5677888888888887322211111256667778888888776
No 56
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.14 E-value=7.2e-07 Score=80.25 Aligned_cols=40 Identities=23% Similarity=0.339 Sum_probs=27.5
Q ss_pred ccEEeccCCCCCCchh--hhhh-cCCCcEEEeecCcccccccc
Q 038877 248 LNTVSVDYCQKAKDLT--WLVF-AQNLKELRIDSCYDVEEIIS 287 (298)
Q Consensus 248 L~~L~l~~c~~l~~l~--~l~~-~~~L~~L~l~~c~~l~~~~~ 287 (298)
++.|.+..|...++.. .... +..++.+++.+|+.+.....
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccccchhh
Confidence 6888888886666532 2222 77888888888887776553
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.12 E-value=3.8e-06 Score=48.48 Aligned_cols=14 Identities=50% Similarity=0.536 Sum_probs=5.1
Q ss_pred cCccCCCeeeccCC
Q 038877 74 SNLVSLHHLDLSWT 87 (298)
Q Consensus 74 ~~l~~L~~L~l~~~ 87 (298)
+.+++|++|++++|
T Consensus 21 ~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 21 SNLPNLETLNLSNN 34 (44)
T ss_dssp TTCTTSSEEEETSS
T ss_pred hCCCCCCEEEecCC
Confidence 33333333333333
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.12 E-value=4.5e-06 Score=63.91 Aligned_cols=106 Identities=25% Similarity=0.284 Sum_probs=57.6
Q ss_pred CCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccchhhc-CCCcccEEeccCCccC--CCCchhhhcCCCcccE
Q 038877 53 SSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELK-ALEKLRYLSLEGTRHL--SIIPHQLISGFSKLEV 129 (298)
Q Consensus 53 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~--~~~~~~~~~~l~~L~~ 129 (298)
.+...+|+++| .+..++ .+..++.|++|.+++|.++.+...+. .+++|+.|.+.+|+.. +++.. +..+|+|+.
T Consensus 42 d~~d~iDLtdN-dl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p--La~~p~L~~ 117 (233)
T KOG1644|consen 42 DQFDAIDLTDN-DLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP--LASCPKLEY 117 (233)
T ss_pred cccceeccccc-chhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch--hccCCccce
Confidence 34555666666 555443 24556666677676666665544433 3445666666665322 22323 566666666
Q ss_pred EEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEec
Q 038877 130 LRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLH 174 (298)
Q Consensus 130 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~ 174 (298)
|.+-+|.... ....-.-.+..+++|+.||+..-
T Consensus 118 Ltll~Npv~~------------k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 118 LTLLGNPVEH------------KKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeecCCchhc------------ccCceeEEEEecCcceEeehhhh
Confidence 6666665532 12222334445666666666653
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.05 E-value=7e-06 Score=47.37 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=19.9
Q ss_pred cccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC
Q 038877 30 RLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL 69 (298)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 69 (298)
+|++|++++|.+.++++. ++++++|++|++++| .++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPE-LSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGH-GTTCTTSSEEEETSS-CCSBE
T ss_pred cceEEEccCCCCcccCch-HhCCCCCCEEEecCC-CCCCC
Confidence 455555555555555554 555566666666555 44433
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.98 E-value=3.6e-05 Score=66.35 Aligned_cols=81 Identities=17% Similarity=0.288 Sum_probs=56.8
Q ss_pred ccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCC-cccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCee
Q 038877 4 EEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGN-WIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHL 82 (298)
Q Consensus 4 ~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 82 (298)
..|.++++|++++|.+..+|.+ .++|++|.+.+| .+..+|.. + .++|+.|++++|..+..+|.. |+.|
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L 117 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPES------VRSL 117 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCch-h--hhhhhheEccCcccccccccc------cceE
Confidence 4478899999999988888843 457999999987 55566654 3 357999999998666666643 5566
Q ss_pred eccCCc---ccccchh
Q 038877 83 DLSWTR---IRGLPQE 95 (298)
Q Consensus 83 ~l~~~~---~~~l~~~ 95 (298)
++..+. +..+|..
T Consensus 118 ~L~~n~~~~L~~LPss 133 (426)
T PRK15386 118 EIKGSATDSIKNVPNG 133 (426)
T ss_pred EeCCCCCcccccCcch
Confidence 665543 3345543
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.89 E-value=6.6e-05 Score=64.76 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=21.8
Q ss_pred CCCccEEEccCCcCCccCCccccCccCCCeeeccCC-cccccchhhcCCCcccEEeccCC
Q 038877 52 MSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWT-RIRGLPQELKALEKLRYLSLEGT 110 (298)
Q Consensus 52 ~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~-~~~~l~~~~~~l~~L~~L~l~~~ 110 (298)
+.+++.|++++| .+..+|. --.+|+.|.+++| .++.+|..+ .++|+.|++++|
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 444444444444 4444441 1123444444443 333333322 124444444444
No 62
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.88 E-value=4.2e-06 Score=75.31 Aligned_cols=133 Identities=25% Similarity=0.150 Sum_probs=59.2
Q ss_pred cCCCccEEEccCCcCCcc--CCccccCccCCCeeeccCC--cccc----cchhhcCCCcccEEeccCCccCCCCchhhh-
Q 038877 51 SMSSLRVLSLRRNLALSK--LPSGISNLVSLHHLDLSWT--RIRG----LPQELKALEKLRYLSLEGTRHLSIIPHQLI- 121 (298)
Q Consensus 51 ~~~~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~l~~~--~~~~----l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~- 121 (298)
.++.|+.+.+..+..+.. +-.....+++|+.|+++++ .... .......+++|+.++++.+..++...-..+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 355566666655544443 2223344556666666542 1111 112233445566666665542322221112
Q ss_pred cCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEE
Q 038877 122 SGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVG 196 (298)
Q Consensus 122 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~ 196 (298)
..+++|+.|.+.+|...+ ...+......+++|+.++++.+.......+......+++++.|.
T Consensus 266 ~~c~~L~~L~l~~c~~lt-------------~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~ 327 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLT-------------DEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELK 327 (482)
T ss_pred hhCCCcceEccCCCCccc-------------hhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhh
Confidence 235566666655444211 23344444455566666666555433333333333344444433
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.86 E-value=1.8e-05 Score=63.56 Aligned_cols=240 Identities=15% Similarity=0.142 Sum_probs=122.0
Q ss_pred CCCccEEEeecCCCcC-----CC-CCCCCCcccEEEecCCccc----ccC------chHHhcCCCccEEEccCCcCCc-c
Q 038877 6 WEGAKRISLMKTGIQS-----PS-EIPTCPRLVTFLLDGNWIE----EIT------DGFFRSMSSLRVLSLRRNLALS-K 68 (298)
Q Consensus 6 ~~~L~~L~l~~~~~~~-----~~-~~~~~~~L~~L~l~~~~~~----~~~------~~~~~~~~~L~~L~l~~~~~~~-~ 68 (298)
+..+..++++||-|.. +. .+..-.+|+..+++.-..+ .++ ..++-+||+|+.++++.| .++ .
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN-Afg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN-AFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc-ccCcc
Confidence 5667777888877765 21 2244556666666654322 111 122556777777777777 443 3
Q ss_pred CCc----cccCccCCCeeeccCCcccccc--------------hhhcCCCcccEEeccCCccCCCCchhh----hcCCCc
Q 038877 69 LPS----GISNLVSLHHLDLSWTRIRGLP--------------QELKALEKLRYLSLEGTRHLSIIPHQL----ISGFSK 126 (298)
Q Consensus 69 ~p~----~~~~l~~L~~L~l~~~~~~~l~--------------~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~~l~~ 126 (298)
.|+ .++.-..|.+|.+.+|.+..+. .....-|.|+.+++..| .+...+... +..-..
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN-Rlengs~~~~a~~l~sh~~ 186 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN-RLENGSKELSAALLESHEN 186 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc-hhccCcHHHHHHHHHhhcC
Confidence 332 2445566777777777665332 11234566777777666 333333221 112245
Q ss_pred ccEEEeeccCCccccccccccccccC-chhHHHhhcCCCCccEEEEEecCccchhh--hccccccccceeEEEEeccCCC
Q 038877 127 LEVLRLLWCGLWSRKEQEEGSVLYDD-AEPLMKELLGLKHLNVLSWSLHSSLAVQK--FLKYPKLLSITQSVGVYFCQSP 203 (298)
Q Consensus 127 L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~~L~~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~ 203 (298)
|..+.+..|.+.. .+ ..-....+..+++|+.|+++.|.++.... +......-+.|+.|.+..|-..
T Consensus 187 lk~vki~qNgIrp-----------egv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 187 LKEVKIQQNGIRP-----------EGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred ceeEEeeecCcCc-----------chhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 6677777776632 00 11123445566777777777766533221 1111111123566666666543
Q ss_pred Cccccc----cc--ccccccceecccCCcce-eeec-chhhhhccccccCCcccEEeccCCCCCCch
Q 038877 204 PLNVLH----LA--YMENLQELVILNSDLEE-MKID-SAEEVKKLFRSGFRSLNTVSVDYCQKAKDL 262 (298)
Q Consensus 204 ~~~~~~----l~--~l~~L~~L~l~~~~~~~-~~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l 262 (298)
.....+ +. ..|+|..|....|.... +... ++ ..+....+|-|..|.+.++ .++..
T Consensus 256 ~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l---~~~e~~~~p~L~~le~ngN-r~~E~ 318 (388)
T COG5238 256 NEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISL---NEFEQDAVPLLVDLERNGN-RIKEL 318 (388)
T ss_pred cccHHHHHHHhhhhcCCCccccccchhhhcCceeeeech---hhhhhcccHHHHHHHHccC-cchhH
Confidence 222221 11 24677777776665544 1111 11 1122356677777777766 44443
No 64
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.71 E-value=5.1e-06 Score=59.71 Aligned_cols=89 Identities=26% Similarity=0.324 Sum_probs=77.8
Q ss_pred cCCCccEEEeecCCCcCCC-CC-CCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCee
Q 038877 5 EWEGAKRISLMKTGIQSPS-EI-PTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHL 82 (298)
Q Consensus 5 ~~~~L~~L~l~~~~~~~~~-~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 82 (298)
+-..|..+++++|.+.++| .+ ..++-+++|++.+|.+.++|.. +..++.|+.++++.| .+...|.-+..+.++-.|
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDML 128 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccC-ccccchHHHHHHHhHHHh
Confidence 4456788999999999987 34 6788999999999999999998 899999999999999 888888878889999999
Q ss_pred eccCCcccccchh
Q 038877 83 DLSWTRIRGLPQE 95 (298)
Q Consensus 83 ~l~~~~~~~l~~~ 95 (298)
+..+|...+++..
T Consensus 129 ds~~na~~eid~d 141 (177)
T KOG4579|consen 129 DSPENARAEIDVD 141 (177)
T ss_pred cCCCCccccCcHH
Confidence 9999988877754
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.68 E-value=3e-05 Score=61.78 Aligned_cols=81 Identities=22% Similarity=0.362 Sum_probs=35.3
Q ss_pred CccEEEeecCCCcCCCCCCCCCcccEEEecCC--ccc-ccCchHHhcCCCccEEEccCCcCCccCC--ccccCccCCCee
Q 038877 8 GAKRISLMKTGIQSPSEIPTCPRLVTFLLDGN--WIE-EITDGFFRSMSSLRVLSLRRNLALSKLP--SGISNLVSLHHL 82 (298)
Q Consensus 8 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~--~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~p--~~~~~l~~L~~L 82 (298)
.|+.+++.+..++.+..+..+++|++|.++.| .+. .+..- ...+++|+++++++| .+..+- .....+.+|..|
T Consensus 44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCC-ccccccccchhhhhcchhhh
Confidence 34444444444444444444555555555555 222 22222 333455555555555 443210 113334445555
Q ss_pred eccCCccc
Q 038877 83 DLSWTRIR 90 (298)
Q Consensus 83 ~l~~~~~~ 90 (298)
++.+|..+
T Consensus 122 dl~n~~~~ 129 (260)
T KOG2739|consen 122 DLFNCSVT 129 (260)
T ss_pred hcccCCcc
Confidence 55554433
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.58 E-value=0.00029 Score=51.22 Aligned_cols=117 Identities=18% Similarity=0.333 Sum_probs=46.8
Q ss_pred cccCCCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCC
Q 038877 3 VEEWEGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSL 79 (298)
Q Consensus 3 ~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L 79 (298)
|.++.+|+.+.+.. .+..++ .+..+++|+.+.+..+ +..+...++..+++++.+.+..+ +..+ ...+..+.+|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--ccccccccccccccc
Confidence 55566666666653 344433 2255666666666653 44555555666666666666543 2222 2345556666
Q ss_pred CeeeccCCcccccch-hhcCCCcccEEeccCCccCCCCchhhhcCCCcc
Q 038877 80 HHLDLSWTRIRGLPQ-ELKALEKLRYLSLEGTRHLSIIPHQLISGFSKL 127 (298)
Q Consensus 80 ~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L 127 (298)
+.+.+..+ +..++. .+..+ +++.+.+..+ ...++...+.++++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccC
Confidence 66666543 333332 24444 6666665542 344444445555554
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=7.5e-06 Score=65.82 Aligned_cols=77 Identities=30% Similarity=0.316 Sum_probs=36.6
Q ss_pred cccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccch--hhcCCCcccEEec
Q 038877 30 RLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQ--ELKALEKLRYLSL 107 (298)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~--~~~~l~~L~~L~l 107 (298)
+.+.|++.||.+.+|.- ..+++.|++|.|+-| .++.+.+ +..|.+|++|+|..|.+..+.+ -+.++++|+.|.+
T Consensus 20 ~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvN-kIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVN-KISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHHHH--HHhcccceeEEeecc-ccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 34444444554443322 344555555555555 4444422 3445555555555555444432 2445555555555
Q ss_pred cCC
Q 038877 108 EGT 110 (298)
Q Consensus 108 ~~~ 110 (298)
..|
T Consensus 96 ~EN 98 (388)
T KOG2123|consen 96 DEN 98 (388)
T ss_pred ccC
Confidence 444
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=5.3e-06 Score=66.66 Aligned_cols=98 Identities=26% Similarity=0.299 Sum_probs=78.9
Q ss_pred CCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc--cccCccCCCeee
Q 038877 6 WEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS--GISNLVSLHHLD 83 (298)
Q Consensus 6 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~--~~~~l~~L~~L~ 83 (298)
+.+++.|++.|+.+.++.-...|+.|++|.|+-|.|+.+.+ +..|.+|+.|+|..| .+..+-+ -+.++++|+.|.
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHh
Confidence 45778899999999988777899999999999999987766 889999999999999 7765533 367889999999
Q ss_pred ccCCccc-cc-c----hhhcCCCcccEEe
Q 038877 84 LSWTRIR-GL-P----QELKALEKLRYLS 106 (298)
Q Consensus 84 l~~~~~~-~l-~----~~~~~l~~L~~L~ 106 (298)
|..|... .- + ..+..+|+|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 9887543 21 1 3477888898887
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=1.9e-05 Score=60.59 Aligned_cols=87 Identities=17% Similarity=0.201 Sum_probs=63.7
Q ss_pred eeEEEEeccCCCCcccccccccccccceecccCCcce-eeecchhhhhccccccCCcccEEeccCCCCCCc--hhhhhhc
Q 038877 192 TQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEE-MKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKD--LTWLVFA 268 (298)
Q Consensus 192 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--l~~l~~~ 268 (298)
++.++-+++.+.......+..++.++.|.+..|+..+ -+++.+. ..+++|+.|+|++|+.|++ +.++..+
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~-------~~~~~L~~L~lsgC~rIT~~GL~~L~~l 175 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLG-------GLAPSLQDLDLSGCPRITDGGLACLLKL 175 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhc-------ccccchheeeccCCCeechhHHHHHHHh
Confidence 4455555543333444457778888899999888877 5555552 3689999999999999998 4578889
Q ss_pred CCCcEEEeecCcccccc
Q 038877 269 QNLKELRIDSCYDVEEI 285 (298)
Q Consensus 269 ~~L~~L~l~~c~~l~~~ 285 (298)
++|+.|.+.+.+.+...
T Consensus 176 knLr~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 176 KNLRRLHLYDLPYVANL 192 (221)
T ss_pred hhhHHHHhcCchhhhch
Confidence 99999999988776543
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.81 E-value=0.0041 Score=45.10 Aligned_cols=102 Identities=17% Similarity=0.316 Sum_probs=54.2
Q ss_pred CCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCC-ccccCccCCCeeeccCCcccccc-hhhcCCCccc
Q 038877 26 PTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLP-SGISNLVSLHHLDLSWTRIRGLP-QELKALEKLR 103 (298)
Q Consensus 26 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~ 103 (298)
.++++|+.+.+.. .+..+....|..+.+|+.+.+..+ +..++ ..+..+.+++.+.+.. .+..++ ..+..+++|+
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 5677788888774 455666666777878888887664 44443 3567777788888865 444333 3455677888
Q ss_pred EEeccCCccCCCCchhhhcCCCcccEEEeec
Q 038877 104 YLSLEGTRHLSIIPHQLISGFSKLEVLRLLW 134 (298)
Q Consensus 104 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 134 (298)
.+.+..+ ...++...+.++ +|+.+.+..
T Consensus 85 ~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 85 NIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 8887653 445555556676 777777654
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.79 E-value=0.00056 Score=54.74 Aligned_cols=60 Identities=30% Similarity=0.477 Sum_probs=25.2
Q ss_pred ccCCCeeeccCC--ccc-ccchhhcCCCcccEEeccCCcc--CCCCchhhhcCCCcccEEEeeccCC
Q 038877 76 LVSLHHLDLSWT--RIR-GLPQELKALEKLRYLSLEGTRH--LSIIPHQLISGFSKLEVLRLLWCGL 137 (298)
Q Consensus 76 l~~L~~L~l~~~--~~~-~l~~~~~~l~~L~~L~l~~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~ 137 (298)
+++|+.|.++.| .+. .++.....+++|+++++++|.. +++++. +..+.+|..|++..|..
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENLKSLDLFNCSV 128 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcchhhhhcccCCc
Confidence 444555555544 222 3333333345555555555422 122222 34444445555554443
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.73 E-value=0.0029 Score=48.88 Aligned_cols=61 Identities=15% Similarity=0.097 Sum_probs=33.3
Q ss_pred cccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccC
Q 038877 126 KLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQ 201 (298)
Q Consensus 126 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 201 (298)
.++.++.+++.+ ...-...+..++.++.+.+.+|.......+.......++|+.|++++|+
T Consensus 102 ~IeaVDAsds~I---------------~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~ 162 (221)
T KOG3864|consen 102 KIEAVDASDSSI---------------MYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP 162 (221)
T ss_pred eEEEEecCCchH---------------HHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCC
Confidence 366777777766 3344566666677777777666544333333333344444444444443
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.68 E-value=0.0054 Score=29.35 Aligned_cols=14 Identities=36% Similarity=0.555 Sum_probs=5.4
Q ss_pred CeeeccCCcccccc
Q 038877 80 HHLDLSWTRIRGLP 93 (298)
Q Consensus 80 ~~L~l~~~~~~~l~ 93 (298)
++|++++|.++.+|
T Consensus 3 ~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 3 EYLDLSGNNLTSIP 16 (22)
T ss_dssp SEEEETSSEESEEG
T ss_pred cEEECCCCcCEeCC
Confidence 33444444333333
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.24 E-value=0.0079 Score=28.75 Aligned_cols=16 Identities=31% Similarity=0.356 Sum_probs=7.3
Q ss_pred ccEEEecCCcccccCc
Q 038877 31 LVTFLLDGNWIEEITD 46 (298)
Q Consensus 31 L~~L~l~~~~~~~~~~ 46 (298)
|++|++++|.++.+|.
T Consensus 2 L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPS 17 (22)
T ss_dssp ESEEEETSSEESEEGT
T ss_pred ccEEECCCCcCEeCCh
Confidence 4444444444444443
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.47 E-value=0.027 Score=24.95 Aligned_cols=11 Identities=55% Similarity=0.715 Sum_probs=3.3
Q ss_pred CCeeeccCCcc
Q 038877 79 LHHLDLSWTRI 89 (298)
Q Consensus 79 L~~L~l~~~~~ 89 (298)
|+.|++++|.+
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 34444444433
No 76
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=93.29 E-value=0.048 Score=27.17 Aligned_cols=18 Identities=28% Similarity=0.678 Sum_probs=12.5
Q ss_pred cCCCcEEEeecCcccccc
Q 038877 268 AQNLKELRIDSCYDVEEI 285 (298)
Q Consensus 268 ~~~L~~L~l~~c~~l~~~ 285 (298)
+|+|++|+|.+|+.+++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 467777777777776654
No 77
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=92.28 E-value=0.097 Score=26.04 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=16.8
Q ss_pred CCcccEEeccCCCCCCchh
Q 038877 245 FRSLNTVSVDYCQKAKDLT 263 (298)
Q Consensus 245 ~~~L~~L~l~~c~~l~~l~ 263 (298)
+++|++|++.+|+.+++..
T Consensus 1 c~~L~~L~l~~C~~itD~g 19 (26)
T smart00367 1 CPNLRELDLSGCTNITDEG 19 (26)
T ss_pred CCCCCEeCCCCCCCcCHHH
Confidence 4789999999999999864
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.82 E-value=0.0035 Score=56.05 Aligned_cols=17 Identities=35% Similarity=0.389 Sum_probs=8.9
Q ss_pred CCCCcccEEEecCCccc
Q 038877 26 PTCPRLVTFLLDGNWIE 42 (298)
Q Consensus 26 ~~~~~L~~L~l~~~~~~ 42 (298)
...+.|..|++++|.++
T Consensus 112 ~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 112 KTLPTLGQLDLSGNNLG 128 (478)
T ss_pred cccccHhHhhcccCCCc
Confidence 44455555555555444
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.74 E-value=0.16 Score=25.15 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=8.2
Q ss_pred cccEEEecCCcccccCch
Q 038877 30 RLVTFLLDGNWIEEITDG 47 (298)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~ 47 (298)
+|+.|++.+|.+..+|..
T Consensus 3 ~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 3 NLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCEEECCCCcCCcCCHH
Confidence 444444444444444433
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.74 E-value=0.16 Score=25.15 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=8.2
Q ss_pred cccEEEecCCcccccCch
Q 038877 30 RLVTFLLDGNWIEEITDG 47 (298)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~ 47 (298)
+|+.|++.+|.+..+|..
T Consensus 3 ~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 3 NLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCEEECCCCcCCcCCHH
Confidence 444444444444444433
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.24 E-value=0.0086 Score=47.45 Aligned_cols=84 Identities=15% Similarity=0.158 Sum_probs=51.4
Q ss_pred CCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccchhhcCCCcccEE
Q 038877 26 PTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYL 105 (298)
Q Consensus 26 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L 105 (298)
..+.+.+.|+++.+.+-.+-.. |+.+..|..|+++.+ .+..+|.-++....+..+++..|..+..|.+.++.+.++++
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 4555666666666654433333 455555666666666 66666666666666666666666666666666666666666
Q ss_pred eccCCc
Q 038877 106 SLEGTR 111 (298)
Q Consensus 106 ~l~~~~ 111 (298)
+...+.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 666553
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.00 E-value=0.0075 Score=47.76 Aligned_cols=87 Identities=13% Similarity=0.107 Sum_probs=72.2
Q ss_pred CcccCCCccEEEeecCCCcCCC-CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCC
Q 038877 2 KVEEWEGAKRISLMKTGIQSPS-EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLH 80 (298)
Q Consensus 2 ~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 80 (298)
+++.+.+.+.|+++.|....+. .++-++.+..|+++.+.+...|.+ ++....+..++...| ..+..|.+++..++++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKN-NHSQQPKSQKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhcc-chhhCCccccccCCcc
Confidence 3566778888888888766643 346678889999999998888888 788888888999888 8889999999999999
Q ss_pred eeeccCCccc
Q 038877 81 HLDLSWTRIR 90 (298)
Q Consensus 81 ~L~l~~~~~~ 90 (298)
++++.++.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 9999988654
No 83
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=86.08 E-value=0.011 Score=53.07 Aligned_cols=106 Identities=25% Similarity=0.345 Sum_probs=59.7
Q ss_pred ccEEEecCCcccc----cCchHHhcCCCccEEEccCCcCCcc-----CCccccCc-cCCCeeeccCCccc-----ccchh
Q 038877 31 LVTFLLDGNWIEE----ITDGFFRSMSSLRVLSLRRNLALSK-----LPSGISNL-VSLHHLDLSWTRIR-----GLPQE 95 (298)
Q Consensus 31 L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~-----~p~~~~~l-~~L~~L~l~~~~~~-----~l~~~ 95 (298)
+..+.+.+|.+.. .-...+.....|+.|++++| .+.. +...+... ..+++|++..|.++ .+.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n-~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGN-NLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccC-CCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 6777777776652 12233666777888888888 5541 11112221 44666666666555 34455
Q ss_pred hcCCCcccEEeccCCccCCC----Cchhhhc----CCCcccEEEeeccCCc
Q 038877 96 LKALEKLRYLSLEGTRHLSI----IPHQLIS----GFSKLEVLRLLWCGLW 138 (298)
Q Consensus 96 ~~~l~~L~~L~l~~~~~~~~----~~~~~~~----~l~~L~~L~l~~~~~~ 138 (298)
+.....++.++++.|..... ++.. +. ...++++|++.+|.++
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~-l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQA-LESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhh-hhhhhcccccHHHHhhhhcCcC
Confidence 66666777777777644211 1111 22 3556777777777664
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=77.68 E-value=1.4 Score=21.11 Aligned_cols=14 Identities=43% Similarity=0.487 Sum_probs=6.5
Q ss_pred CcccEEEecCCccc
Q 038877 29 PRLVTFLLDGNWIE 42 (298)
Q Consensus 29 ~~L~~L~l~~~~~~ 42 (298)
++|++|++++|.++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45555555555544
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=74.84 E-value=2.2 Score=21.21 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=11.0
Q ss_pred CccEEEeecCCCcCCCCC
Q 038877 8 GAKRISLMKTGIQSPSEI 25 (298)
Q Consensus 8 ~L~~L~l~~~~~~~~~~~ 25 (298)
+|+.|++++|.++.+|.+
T Consensus 3 ~L~~L~vs~N~Lt~LPeL 20 (26)
T smart00364 3 SLKELNVSNNQLTSLPEL 20 (26)
T ss_pred ccceeecCCCccccCccc
Confidence 456666666666665554
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=74.45 E-value=2.9 Score=20.78 Aligned_cols=16 Identities=13% Similarity=0.221 Sum_probs=7.9
Q ss_pred CCccEEEeecCCCcCC
Q 038877 7 EGAKRISLMKTGIQSP 22 (298)
Q Consensus 7 ~~L~~L~l~~~~~~~~ 22 (298)
.+|+.|++++|.|..+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 3455555555554443
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=72.06 E-value=1.6 Score=39.41 Aligned_cols=66 Identities=15% Similarity=0.089 Sum_probs=32.0
Q ss_pred CCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccc--cccccceecccCCcce
Q 038877 163 LKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAY--MENLQELVILNSDLEE 228 (298)
Q Consensus 163 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~~~ 228 (298)
.+.+..+.++.|....++.+.......+.+..|+|++|........++.+ ...|++|-+.+|.+.+
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 34555555555555555555555555555566666655221111112221 2355666666665554
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=56.51 E-value=9.2 Score=19.17 Aligned_cols=14 Identities=29% Similarity=0.347 Sum_probs=7.8
Q ss_pred CcccEEEecCCccc
Q 038877 29 PRLVTFLLDGNWIE 42 (298)
Q Consensus 29 ~~L~~L~l~~~~~~ 42 (298)
++|++|++++|.++
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 34556666666554
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=45.09 E-value=13 Score=33.83 Aligned_cols=63 Identities=17% Similarity=0.257 Sum_probs=36.4
Q ss_pred CCCCcccEEEecCCcccccC--chHHhcCCCccEEEccCCcCCc----cCCccccCccCCCeeeccCCccc
Q 038877 26 PTCPRLVTFLLDGNWIEEIT--DGFFRSMSSLRVLSLRRNLALS----KLPSGISNLVSLHHLDLSWTRIR 90 (298)
Q Consensus 26 ~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~l~~~~~~ 90 (298)
...+.+..+.+++|.+.++. .+..+..|+|+.|+|++|.... +++ .++ ...|++|.+.+|.+.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~-K~k-~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELD-KLK-GLPLEELVLEGNPLC 283 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhh-hhc-CCCHHHeeecCCccc
Confidence 45667777777777655222 2335667778888887772111 222 122 244777777777654
Done!