Query 038877
Match_columns 298
No_of_seqs 165 out of 2532
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 06:25:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038877.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038877hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fmz_A Internalin; leucine ric 99.9 5.7E-26 2E-30 194.2 20.3 254 3-281 40-299 (347)
2 4fmz_A Internalin; leucine ric 99.9 5.1E-25 1.8E-29 188.3 22.2 270 1-296 60-337 (347)
3 2id5_A Lingo-1, leucine rich r 99.9 5.7E-25 2E-29 195.9 20.0 260 7-279 32-306 (477)
4 1xku_A Decorin; proteoglycan, 99.9 6.9E-25 2.3E-29 186.3 18.6 247 7-286 31-279 (330)
5 4fcg_A Uncharacterized protein 99.9 6.5E-25 2.2E-29 186.1 17.5 221 28-278 80-310 (328)
6 1o6v_A Internalin A; bacterial 99.9 1.7E-24 5.7E-29 192.4 20.7 88 2-93 63-150 (466)
7 3o6n_A APL1; leucine-rich repe 99.9 6.9E-25 2.3E-29 190.5 17.6 261 6-285 44-333 (390)
8 2id5_A Lingo-1, leucine rich r 99.9 9.1E-25 3.1E-29 194.7 17.6 267 2-281 51-332 (477)
9 3v47_A TOLL-like receptor 5B a 99.9 1.5E-24 5E-29 192.1 17.8 131 7-138 30-167 (455)
10 2ft3_A Biglycan; proteoglycan, 99.9 1.5E-24 5E-29 184.4 15.5 245 7-285 33-279 (332)
11 2z80_A TOLL-like receptor 2, v 99.9 2.1E-24 7.1E-29 185.0 15.5 254 8-284 53-316 (353)
12 2z66_A Variable lymphocyte rec 99.9 1.6E-24 5.6E-29 182.0 14.4 243 10-280 10-259 (306)
13 3rgz_A Protein brassinosteroid 99.9 5.4E-24 1.9E-28 199.9 19.0 258 6-290 393-725 (768)
14 1ogq_A PGIP-2, polygalacturona 99.9 2.7E-25 9.1E-30 187.4 9.1 246 7-283 50-305 (313)
15 1o6v_A Internalin A; bacterial 99.9 1.3E-23 4.6E-28 186.5 20.3 252 3-279 86-363 (466)
16 3vq2_A TLR4, TOLL-like recepto 99.9 3.8E-24 1.3E-28 196.1 15.8 253 3-281 281-557 (606)
17 3v47_A TOLL-like receptor 5B a 99.9 2.4E-24 8.4E-29 190.7 13.6 269 2-283 49-409 (455)
18 3zyj_A Leucine-rich repeat-con 99.9 9.2E-24 3.1E-28 186.3 17.2 242 9-280 45-290 (440)
19 3bz5_A Internalin-J, INLJ; leu 99.9 1.3E-23 4.4E-28 185.8 17.8 121 3-135 38-158 (457)
20 4eco_A Uncharacterized protein 99.9 1.6E-24 5.4E-29 199.3 12.2 133 2-137 201-365 (636)
21 3zyi_A Leucine-rich repeat-con 99.9 1.3E-23 4.5E-28 185.9 17.4 242 9-280 56-301 (452)
22 4fcg_A Uncharacterized protein 99.9 8.2E-24 2.8E-28 179.3 15.4 221 6-256 80-311 (328)
23 3t6q_A CD180 antigen; protein- 99.9 5.7E-24 2E-28 194.9 15.1 266 3-280 274-558 (606)
24 3t6q_A CD180 antigen; protein- 99.9 1.5E-23 5E-28 192.2 17.5 61 3-63 125-189 (606)
25 3oja_B Anopheles plasmodium-re 99.9 9E-24 3.1E-28 193.1 16.0 256 7-280 51-335 (597)
26 3o6n_A APL1; leucine-rich repe 99.9 2.2E-23 7.5E-28 181.0 17.3 261 3-280 65-350 (390)
27 2z81_A CD282 antigen, TOLL-lik 99.9 2.7E-23 9.2E-28 188.2 18.3 132 7-139 26-162 (549)
28 4ecn_A Leucine-rich repeat pro 99.9 1.1E-23 3.6E-28 198.1 15.8 133 2-138 443-608 (876)
29 3bz5_A Internalin-J, INLJ; leu 99.9 2.4E-23 8.3E-28 184.0 16.2 247 1-287 58-304 (457)
30 3oja_B Anopheles plasmodium-re 99.9 3.6E-23 1.2E-27 189.2 17.1 261 3-280 71-356 (597)
31 1ogq_A PGIP-2, polygalacturona 99.9 3.4E-24 1.2E-28 180.6 9.3 229 2-262 71-307 (313)
32 4eco_A Uncharacterized protein 99.9 3.9E-23 1.3E-27 190.1 16.3 249 7-286 305-582 (636)
33 3vq2_A TLR4, TOLL-like recepto 99.9 2.8E-23 9.7E-28 190.3 15.1 246 8-287 262-538 (606)
34 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.1E-22 3.8E-27 184.8 18.8 102 7-111 52-157 (562)
35 1ozn_A Reticulon 4 receptor; N 99.9 4.7E-23 1.6E-27 171.4 14.8 221 10-258 14-237 (285)
36 3zyj_A Leucine-rich repeat-con 99.9 4.3E-23 1.5E-27 181.9 15.3 223 7-257 64-290 (440)
37 2z7x_B TOLL-like receptor 1, v 99.9 5.1E-23 1.8E-27 185.2 15.9 102 3-110 41-148 (520)
38 4ecn_A Leucine-rich repeat pro 99.9 1.4E-22 4.8E-27 190.6 19.4 270 3-287 511-823 (876)
39 2z7x_B TOLL-like receptor 1, v 99.9 4.8E-22 1.6E-26 178.9 22.1 122 11-137 4-127 (520)
40 1xku_A Decorin; proteoglycan, 99.9 2.4E-22 8.3E-27 170.6 19.1 243 6-282 51-306 (330)
41 3rgz_A Protein brassinosteroid 99.9 1.8E-23 6.2E-28 196.4 13.2 268 5-286 267-555 (768)
42 3zyi_A Leucine-rich repeat-con 99.9 4.3E-23 1.5E-27 182.6 14.7 223 7-257 75-301 (452)
43 2z66_A Variable lymphocyte rec 99.9 3.9E-23 1.3E-27 173.6 13.5 225 6-257 27-259 (306)
44 2z80_A TOLL-like receptor 2, v 99.9 3.2E-22 1.1E-26 171.4 19.0 256 5-287 29-294 (353)
45 1ziw_A TOLL-like receptor 3; i 99.9 3.7E-22 1.3E-26 185.2 19.4 131 7-139 25-159 (680)
46 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.9E-21 6.5E-26 176.6 21.6 128 5-138 29-159 (562)
47 2z81_A CD282 antigen, TOLL-lik 99.9 2.3E-22 7.8E-27 182.1 15.3 259 2-287 45-404 (549)
48 2ft3_A Biglycan; proteoglycan, 99.9 3.2E-22 1.1E-26 170.0 14.8 222 6-262 53-279 (332)
49 3j0a_A TOLL-like receptor 5; m 99.9 4E-22 1.4E-26 189.1 17.0 133 6-139 23-162 (844)
50 1ziw_A TOLL-like receptor 3; i 99.9 7.2E-22 2.5E-26 183.3 18.0 273 2-280 44-364 (680)
51 2z63_A TOLL-like receptor 4, v 99.9 3.8E-22 1.3E-26 181.4 14.5 128 8-137 29-161 (570)
52 1wwl_A Monocyte differentiatio 99.9 1.1E-23 3.7E-28 177.5 3.6 246 4-280 40-307 (312)
53 2z63_A TOLL-like receptor 4, v 99.9 8.2E-22 2.8E-26 179.2 14.9 155 2-174 47-210 (570)
54 1ozn_A Reticulon 4 receptor; N 99.9 2.5E-21 8.5E-26 160.9 16.5 221 32-282 14-238 (285)
55 3j0a_A TOLL-like receptor 5; m 99.9 3.5E-21 1.2E-25 182.6 19.3 115 2-117 43-165 (844)
56 3o53_A Protein LRIM1, AGAP0063 99.9 4.8E-23 1.6E-27 173.9 5.2 242 5-286 32-279 (317)
57 1h6u_A Internalin H; cell adhe 99.9 4.6E-21 1.6E-25 161.1 14.3 198 3-231 37-234 (308)
58 2xwt_C Thyrotropin receptor; s 99.9 4.1E-21 1.4E-25 155.5 12.0 203 2-227 6-218 (239)
59 3o53_A Protein LRIM1, AGAP0063 99.8 1E-21 3.6E-26 165.7 8.0 236 9-282 12-250 (317)
60 3oja_A Leucine-rich immune mol 99.8 6.6E-22 2.2E-26 176.3 6.4 233 5-277 32-270 (487)
61 3g06_A SSPH2 (leucine-rich rep 99.8 5.9E-20 2E-24 167.4 18.3 238 8-282 41-297 (622)
62 1jl5_A Outer protein YOPM; leu 99.8 9.2E-20 3.1E-24 161.0 18.4 118 8-137 132-249 (454)
63 1h6u_A Internalin H; cell adhe 99.8 7.7E-20 2.6E-24 153.6 16.2 204 16-261 28-231 (308)
64 2o6q_A Variable lymphocyte rec 99.8 9.8E-20 3.4E-24 150.1 16.4 151 8-176 17-169 (270)
65 2z62_A TOLL-like receptor 4, v 99.8 2.9E-20 1E-24 153.7 13.2 218 11-256 11-234 (276)
66 2ast_B S-phase kinase-associat 99.8 1.9E-21 6.3E-26 165.4 5.6 247 8-286 48-309 (336)
67 1p9a_G Platelet glycoprotein I 99.8 6.9E-20 2.4E-24 152.5 14.6 204 3-228 6-209 (290)
68 3oja_A Leucine-rich immune mol 99.8 2E-20 6.9E-25 166.7 11.7 219 26-282 31-250 (487)
69 2o6q_A Variable lymphocyte rec 99.8 1.8E-19 6.2E-24 148.5 15.4 199 29-257 16-216 (270)
70 2z62_A TOLL-like receptor 4, v 99.8 1.4E-19 4.8E-24 149.6 14.5 205 7-228 28-238 (276)
71 3rfs_A Internalin B, repeat mo 99.8 6.3E-20 2.2E-24 151.4 11.7 198 3-228 37-236 (272)
72 4g8a_A TOLL-like receptor 4; l 99.8 2.5E-19 8.5E-24 164.6 16.5 128 8-137 53-185 (635)
73 2xwt_C Thyrotropin receptor; s 99.8 8.9E-20 3E-24 147.6 11.3 213 35-282 17-239 (239)
74 2ca6_A RAN GTPase-activating p 99.8 3.4E-21 1.2E-25 167.0 2.7 37 74-110 91-132 (386)
75 3rfs_A Internalin B, repeat mo 99.8 7E-20 2.4E-24 151.1 10.0 187 2-214 58-246 (272)
76 4ay9_X Follicle-stimulating ho 99.8 5.4E-19 1.8E-23 151.1 15.7 243 3-278 6-255 (350)
77 1wwl_A Monocyte differentiatio 99.8 1.2E-19 4E-24 152.8 11.4 223 9-260 65-309 (312)
78 2ast_B S-phase kinase-associat 99.8 6.4E-20 2.2E-24 155.9 9.6 223 29-279 47-282 (336)
79 1jl5_A Outer protein YOPM; leu 99.8 3.7E-20 1.3E-24 163.5 8.2 187 3-227 7-208 (454)
80 1z7x_W Ribonuclease inhibitor; 99.8 3.9E-20 1.3E-24 163.9 4.8 267 8-280 86-409 (461)
81 1p9a_G Platelet glycoprotein I 99.8 1.2E-18 4E-23 145.0 13.3 199 26-257 7-206 (290)
82 4glp_A Monocyte differentiatio 99.8 6.6E-19 2.2E-23 148.1 10.8 226 28-280 63-305 (310)
83 2ca6_A RAN GTPase-activating p 99.8 8.3E-20 2.8E-24 158.3 4.9 262 3-280 28-341 (386)
84 1h6t_A Internalin B; cell adhe 99.8 2.1E-18 7.1E-23 143.6 13.1 170 4-202 43-212 (291)
85 1z7x_W Ribonuclease inhibitor; 99.8 3.5E-20 1.2E-24 164.2 1.9 224 3-228 24-298 (461)
86 3g06_A SSPH2 (leucine-rich rep 99.8 7.9E-18 2.7E-22 153.4 16.3 218 7-261 61-298 (622)
87 4ezg_A Putative uncharacterize 99.8 4.1E-18 1.4E-22 133.7 11.5 151 4-176 41-193 (197)
88 3ogk_B Coronatine-insensitive 99.8 1.6E-18 5.4E-23 158.3 8.9 212 49-285 289-528 (592)
89 1h6t_A Internalin B; cell adhe 99.8 4E-18 1.4E-22 141.9 10.6 188 12-230 29-216 (291)
90 3goz_A Leucine-rich repeat-con 99.7 7.7E-19 2.6E-23 150.9 5.5 34 9-42 24-64 (362)
91 1m9s_A Internalin B; cell inva 99.7 8.4E-18 2.9E-22 153.0 12.4 172 3-203 39-210 (605)
92 3m19_A Variable lymphocyte rec 99.7 2.7E-17 9.3E-22 134.0 14.1 176 7-202 14-191 (251)
93 4glp_A Monocyte differentiatio 99.7 2.5E-18 8.5E-23 144.5 7.7 224 8-260 65-307 (310)
94 4ay9_X Follicle-stimulating ho 99.7 1.9E-17 6.5E-22 141.5 12.8 234 31-295 11-249 (350)
95 4g8a_A TOLL-like receptor 4; l 99.7 2.9E-17 9.9E-22 150.9 14.8 245 5-278 326-576 (635)
96 1m9s_A Internalin B; cell inva 99.7 2.1E-18 7.2E-23 156.9 6.8 192 9-231 23-214 (605)
97 3m19_A Variable lymphocyte rec 99.7 4.3E-17 1.5E-21 132.8 13.8 154 7-177 35-192 (251)
98 3ogk_B Coronatine-insensitive 99.7 4.7E-18 1.6E-22 155.2 9.0 252 5-280 162-499 (592)
99 1xeu_A Internalin C; cellular 99.7 6.4E-17 2.2E-21 132.6 12.3 148 3-176 37-184 (263)
100 2v9t_B SLIT homolog 2 protein 99.7 1.8E-16 6.3E-21 126.4 12.4 156 3-177 8-165 (220)
101 1xeu_A Internalin C; cellular 99.7 1.5E-17 5E-22 136.4 5.8 167 6-202 18-184 (263)
102 2o6s_A Variable lymphocyte rec 99.7 1.4E-16 4.7E-21 126.0 10.9 149 9-175 9-159 (208)
103 3goz_A Leucine-rich repeat-con 99.7 3.9E-17 1.3E-21 140.2 7.8 253 11-280 2-295 (362)
104 2p1m_B Transport inhibitor res 99.7 2E-17 6.8E-22 151.0 5.7 35 244-280 430-467 (594)
105 3cvr_A Invasion plasmid antige 99.7 6E-16 2.1E-20 139.5 14.7 179 7-228 59-244 (571)
106 3e6j_A Variable lymphocyte rec 99.7 8.1E-16 2.8E-20 123.4 13.6 151 8-177 20-172 (229)
107 2v70_A SLIT-2, SLIT homolog 2 99.7 5.7E-16 2E-20 123.5 12.4 157 2-177 7-166 (220)
108 4ezg_A Putative uncharacterize 99.7 6.3E-16 2.1E-20 121.2 11.5 132 1-138 60-194 (197)
109 2p1m_B Transport inhibitor res 99.6 3.1E-17 1.1E-21 149.7 2.4 266 5-281 182-518 (594)
110 3e6j_A Variable lymphocyte rec 99.6 2E-15 6.8E-20 121.2 12.6 129 7-137 40-171 (229)
111 2o6s_A Variable lymphocyte rec 99.6 6.3E-15 2.2E-19 116.4 14.3 131 6-138 27-161 (208)
112 2v9t_B SLIT homolog 2 protein 99.6 2.8E-15 9.5E-20 119.5 12.1 129 7-137 32-164 (220)
113 1a9n_A U2A', U2A'; complex (nu 99.6 5.5E-16 1.9E-20 119.2 7.6 131 3-137 15-152 (176)
114 2ell_A Acidic leucine-rich nuc 99.6 2.4E-15 8.3E-20 114.7 9.3 127 7-137 24-159 (168)
115 3cvr_A Invasion plasmid antige 99.6 7.1E-15 2.4E-19 132.5 13.6 178 30-261 60-244 (571)
116 2v70_A SLIT-2, SLIT homolog 2 99.6 6.1E-15 2.1E-19 117.6 11.4 130 7-138 32-166 (220)
117 2xot_A Amphoterin-induced prot 99.6 2.8E-15 9.6E-20 128.6 9.5 154 10-178 21-177 (361)
118 2je0_A Acidic leucine-rich nuc 99.6 2.4E-15 8.4E-20 112.3 7.7 124 6-133 16-148 (149)
119 2xot_A Amphoterin-induced prot 99.6 3.4E-15 1.1E-19 128.1 9.6 154 7-177 39-202 (361)
120 2ell_A Acidic leucine-rich nuc 99.6 1.2E-14 4E-19 110.8 9.6 136 26-178 21-161 (168)
121 2wfh_A SLIT homolog 2 protein 99.6 8.2E-14 2.8E-18 108.6 13.5 124 10-137 13-138 (193)
122 2o6r_A Variable lymphocyte rec 99.5 1.1E-13 3.7E-18 106.4 13.4 134 2-139 3-138 (177)
123 1w8a_A SLIT protein; signaling 99.5 4.7E-14 1.6E-18 109.9 11.4 133 2-138 4-139 (192)
124 2je0_A Acidic leucine-rich nuc 99.5 1.7E-14 5.8E-19 107.7 6.3 129 27-172 15-148 (149)
125 1a9n_A U2A', U2A'; complex (nu 99.5 1.4E-13 4.9E-18 105.6 8.8 109 2-111 36-151 (176)
126 1dce_A Protein (RAB geranylger 99.5 2.7E-13 9.3E-18 122.6 11.6 104 30-138 442-546 (567)
127 1w8a_A SLIT protein; signaling 99.4 1.9E-13 6.6E-18 106.4 8.1 127 31-177 10-139 (192)
128 2wfh_A SLIT homolog 2 protein 99.4 5.2E-13 1.8E-17 104.0 10.1 127 31-177 12-139 (193)
129 4b8c_D Glucose-repressible alc 99.4 3.3E-13 1.1E-17 125.6 9.9 111 25-139 220-330 (727)
130 4b8c_D Glucose-repressible alc 99.4 1.7E-13 5.7E-18 127.6 7.8 151 7-177 173-329 (727)
131 1ds9_A Outer arm dynein; leuci 99.4 2.4E-15 8.1E-20 117.9 -4.6 107 26-137 45-152 (198)
132 1dce_A Protein (RAB geranylger 99.4 1.3E-12 4.5E-17 118.1 10.7 151 26-196 406-566 (567)
133 3sb4_A Hypothetical leucine ri 99.4 9.8E-13 3.3E-17 111.2 8.9 241 6-278 48-306 (329)
134 2o6r_A Variable lymphocyte rec 99.3 7.8E-12 2.7E-16 95.9 11.3 110 6-116 27-140 (177)
135 1ds9_A Outer arm dynein; leuci 99.3 1.1E-14 3.8E-19 114.1 -4.9 131 2-137 43-184 (198)
136 2r9u_A Variable lymphocyte rec 99.3 2E-11 6.8E-16 93.4 11.4 101 32-137 15-117 (174)
137 3g39_A Variable lymphocyte rec 99.3 1.8E-11 6.2E-16 93.2 10.8 102 31-137 11-114 (170)
138 2r9u_A Variable lymphocyte rec 99.3 3E-11 1E-15 92.3 10.0 102 9-112 14-117 (174)
139 3g39_A Variable lymphocyte rec 99.3 3.2E-11 1.1E-15 91.8 10.0 104 8-113 10-115 (170)
140 4fdw_A Leucine rich hypothetic 99.2 3.5E-10 1.2E-14 98.0 15.9 212 30-279 136-355 (401)
141 4fdw_A Leucine rich hypothetic 99.2 4.7E-10 1.6E-14 97.2 14.5 239 3-278 132-379 (401)
142 3sb4_A Hypothetical leucine ri 99.2 7.1E-11 2.4E-15 99.8 9.2 82 159-252 245-327 (329)
143 2ifg_A High affinity nerve gro 99.1 6E-10 2.1E-14 94.7 11.4 111 1-113 2-116 (347)
144 3un9_A NLR family member X1; l 99.1 1.6E-11 5.4E-16 105.4 1.0 157 7-176 72-251 (372)
145 3un9_A NLR family member X1; l 99.0 3.5E-11 1.2E-15 103.2 0.6 194 28-234 46-259 (372)
146 3e4g_A ATP synthase subunit S, 99.0 1.1E-09 3.6E-14 82.8 6.5 92 190-285 61-155 (176)
147 2ifg_A High affinity nerve gro 98.9 5.7E-09 2E-13 88.6 9.7 102 32-138 11-116 (347)
148 2ra8_A Uncharacterized protein 98.8 1.4E-08 5E-13 86.4 8.1 165 73-261 135-321 (362)
149 2ra8_A Uncharacterized protein 98.7 5.6E-08 1.9E-12 82.8 8.2 98 7-108 107-227 (362)
150 4gt6_A Cell surface protein; l 98.6 1E-06 3.6E-11 76.0 15.4 256 3-279 59-367 (394)
151 4fs7_A Uncharacterized protein 98.6 3.1E-07 1.1E-11 79.3 11.1 216 24-278 157-375 (394)
152 1io0_A Tropomodulin; LRR prote 98.5 4.6E-08 1.6E-12 75.3 4.2 111 26-138 33-164 (185)
153 4fs7_A Uncharacterized protein 98.5 2E-06 6.8E-11 74.3 14.8 196 43-277 152-351 (394)
154 4gt6_A Cell surface protein; l 98.5 6.6E-06 2.2E-10 71.0 16.5 106 26-135 60-170 (394)
155 1io0_A Tropomodulin; LRR prote 98.4 1.6E-07 5.6E-12 72.2 4.3 120 47-178 30-165 (185)
156 3e4g_A ATP synthase subunit S, 98.3 7.4E-07 2.5E-11 67.2 5.3 100 126-273 62-171 (176)
157 4h09_A Hypothetical leucine ri 98.1 0.00033 1.1E-08 59.9 17.4 78 189-277 262-341 (379)
158 3rw6_A Nuclear RNA export fact 98.0 1.1E-05 3.6E-10 65.4 7.3 104 26-131 138-257 (267)
159 3rw6_A Nuclear RNA export fact 98.0 6.9E-06 2.4E-10 66.5 5.7 112 49-171 137-258 (267)
160 4h09_A Hypothetical leucine ri 97.6 0.00025 8.6E-09 60.6 9.1 103 26-133 214-318 (379)
161 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00033 1.1E-08 53.7 4.4 110 26-137 38-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 96.8 0.0024 8.2E-08 49.0 6.0 117 47-175 35-168 (197)
163 3rfe_A Platelet glycoprotein I 96.4 0.0087 3E-07 42.6 6.7 52 11-63 12-65 (130)
164 3rfe_A Platelet glycoprotein I 95.6 0.02 6.9E-07 40.7 5.3 54 81-137 12-67 (130)
165 2lz0_A Uncharacterized protein 66.6 6.2 0.00021 26.1 3.6 42 43-86 10-52 (100)
166 2lz0_A Uncharacterized protein 56.9 12 0.00042 24.6 3.7 36 96-133 16-51 (100)
No 1
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=5.7e-26 Score=194.22 Aligned_cols=254 Identities=19% Similarity=0.229 Sum_probs=169.0
Q ss_pred cccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCee
Q 038877 3 VEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHL 82 (298)
Q Consensus 3 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 82 (298)
++++++|+.|++.++.+..++.+..+++|++|++++|.+..++. +..+++|++|++++| .+..++ .+..+++|++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLREL 115 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEE
T ss_pred chhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEE
Confidence 34677888888888888888777778888888888888777665 778888888888888 777665 47778888888
Q ss_pred eccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcccccc------ccccccccCchhH
Q 038877 83 DLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQ------EEGSVLYDDAEPL 156 (298)
Q Consensus 83 ~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~------~~~~~~~~~~~~~ 156 (298)
++++|.+..++. +..+++|+.|++++|.....++. +..+++|+.|++++|.+.....- ...++........
T Consensus 116 ~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (347)
T 4fmz_A 116 YLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDI 192 (347)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCC
T ss_pred ECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccc
Confidence 888888777765 77788888888888755555544 67777788887777766331000 0000000000011
Q ss_pred HHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhh
Q 038877 157 MKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEE 236 (298)
Q Consensus 157 ~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 236 (298)
. .+..+++|+.++++++....... ...+++|++|++++|....... +..+++|++|++++|.+..+ ..+
T Consensus 193 ~-~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~-- 261 (347)
T 4fmz_A 193 S-PLASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAV-- 261 (347)
T ss_dssp G-GGGGCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGG--
T ss_pred c-cccCCCccceeecccCCCCCCch----hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhH--
Confidence 1 13444555555555444332222 2334567777777775544333 66777788888877766553 223
Q ss_pred hhccccccCCcccEEeccCCCCCCchhhhhhcCCCcEEEeecCcc
Q 038877 237 VKKLFRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYD 281 (298)
Q Consensus 237 ~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~L~~L~l~~c~~ 281 (298)
..+++|+.|++++| .+++++.+..+++|++|++.+|..
T Consensus 262 ------~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l 299 (347)
T 4fmz_A 262 ------KDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQL 299 (347)
T ss_dssp ------TTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCC
T ss_pred ------hcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCcC
Confidence 56788888888888 777777778888888888888854
No 2
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=5.1e-25 Score=188.32 Aligned_cols=270 Identities=15% Similarity=0.192 Sum_probs=193.4
Q ss_pred CCcccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCC
Q 038877 1 PKVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLH 80 (298)
Q Consensus 1 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 80 (298)
|.++.+++|++|++++|.+.+++.+..+++|++|++++|.+..++. +..+++|++|++++| .+..++. +..+++|+
T Consensus 60 ~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n-~i~~~~~-~~~l~~L~ 135 (347)
T 4fmz_A 60 QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNED-NISDISP-LANLTKMY 135 (347)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTS-CCCCCGG-GTTCTTCC
T ss_pred hhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCC-cccCchh-hccCCcee
Confidence 3467788899999999988887778888899999999988877653 788888999999888 7777765 77788888
Q ss_pred eeeccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcccccc------ccccccccCch
Q 038877 81 HLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQ------EEGSVLYDDAE 154 (298)
Q Consensus 81 ~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~------~~~~~~~~~~~ 154 (298)
+|++++|........+..+++|++|++++|. ...++. +..+++|+.|++++|.+.....- ....+......
T Consensus 136 ~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 136 SLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQIT 212 (347)
T ss_dssp EEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred EEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCcccccccccCCCccceeecccCCCC
Confidence 8888887443333346777777777777773 344443 56777777777777665431110 00111111111
Q ss_pred hHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecch
Q 038877 155 PLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSA 234 (298)
Q Consensus 155 ~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 234 (298)
... .+..+++|+.++++++....... ...+++|++|++++|..... ..+..+++|+.|++++|.+..+ ..+
T Consensus 213 ~~~-~~~~~~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~ 283 (347)
T 4fmz_A 213 DIT-PVANMTRLNSLKIGNNKITDLSP----LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVL 283 (347)
T ss_dssp CCG-GGGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGG
T ss_pred CCc-hhhcCCcCCEEEccCCccCCCcc----hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhh
Confidence 111 27788999999999987765443 34557899999999976553 4688899999999999988764 233
Q ss_pred hhhhccccccCCcccEEeccCCCCCCchh--hhhhcCCCcEEEeecCcccccccccCccccccc
Q 038877 235 EEVKKLFRSGFRSLNTVSVDYCQKAKDLT--WLVFAQNLKELRIDSCYDVEEIISVDKLSDISE 296 (298)
Q Consensus 235 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 296 (298)
..+++|+.|++++| .+++.. .+..+++|++|++++|+ ++.++.......+..
T Consensus 284 --------~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~ 337 (347)
T 4fmz_A 284 --------NNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDS 337 (347)
T ss_dssp --------GGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCSE
T ss_pred --------cCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCCc-cccccChhhhhccce
Confidence 57899999999999 666543 46789999999999996 666655555544443
No 3
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=5.7e-25 Score=195.93 Aligned_cols=260 Identities=20% Similarity=0.200 Sum_probs=117.6
Q ss_pred CCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCeee
Q 038877 7 EGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHLD 83 (298)
Q Consensus 7 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~ 83 (298)
++++.|++++|.+..++ .+..+++|++|++++|.+..+.+..+..+++|++|++++| .+..+|. .+..+++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEE
Confidence 34555666665555532 2355556666666655555443333555556666666555 4554443 345555555555
Q ss_pred ccCCccccc-chhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcccccc--------ccccccccC-c
Q 038877 84 LSWTRIRGL-PQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQ--------EEGSVLYDD-A 153 (298)
Q Consensus 84 l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--------~~~~~~~~~-~ 153 (298)
+++|.+..+ +..+..+++|++|++++|.. ..++...+.++++|+.|++++|.+...... ....+.... .
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDL-VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTC-CEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred CCCCccccCChhHccccccCCEEECCCCcc-ceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence 555555533 33455555555555555532 222222245555555555555544220000 000000000 1
Q ss_pred hhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecc
Q 038877 154 EPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDS 233 (298)
Q Consensus 154 ~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 233 (298)
......+..+++|+.|+++++.... .++.......+|+.|++++|.........+..+++|+.|++++|.+..+....
T Consensus 190 ~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 267 (477)
T 2id5_A 190 AIRDYSFKRLYRLKVLEISHWPYLD--TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM 267 (477)
T ss_dssp EECTTCSCSCTTCCEEEEECCTTCC--EECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTS
T ss_pred EeChhhcccCcccceeeCCCCcccc--ccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhh
Confidence 1112233444455555554433211 11111111124555566555544443344555666666666666655543333
Q ss_pred hhhhhccccccCCcccEEeccCCCCCCchh--hhhhcCCCcEEEeecC
Q 038877 234 AEEVKKLFRSGFRSLNTVSVDYCQKAKDLT--WLVFAQNLKELRIDSC 279 (298)
Q Consensus 234 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~~~~L~~L~l~~c 279 (298)
+ ..+++|+.|++++| .++.+. .+..+++|++|++.++
T Consensus 268 ~--------~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 268 L--------HELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp C--------TTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS
T ss_pred c--------cccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC
Confidence 3 34445555555554 333331 2234455555555544
No 4
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=6.9e-25 Score=186.29 Aligned_cols=247 Identities=18% Similarity=0.232 Sum_probs=194.8
Q ss_pred CCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCeeecc
Q 038877 7 EGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHLDLS 85 (298)
Q Consensus 7 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~ 85 (298)
.+++.++++++.+..+|... .+.+++|++++|.+..++...+..+++|++|++++| .+..+ |..++.+++|++|+++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECC
Confidence 37899999998888877532 378999999999998887755899999999999999 77766 7789999999999999
Q ss_pred CCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCC
Q 038877 86 WTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKH 165 (298)
Q Consensus 86 ~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 165 (298)
+|.++.+|..+. ++|++|++++|. +..++...+.++++|+.|++++|.+.. ....+..+..+++
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~~~l~~ 172 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKS-------------SGIENGAFQGMKK 172 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCG-------------GGBCTTGGGGCTT
T ss_pred CCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCc-------------cCcChhhccCCCC
Confidence 999988886654 789999999984 455665568999999999999998843 2334567788899
Q ss_pred ccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccC
Q 038877 166 LNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGF 245 (298)
Q Consensus 166 L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 245 (298)
|+.++++++....++. ...+.|++|++++|.........+..+++|+.|++++|.+..+....+ ..+
T Consensus 173 L~~L~l~~n~l~~l~~-----~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--------~~l 239 (330)
T 1xku_A 173 LSYIRIADTNITTIPQ-----GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL--------ANT 239 (330)
T ss_dssp CCEEECCSSCCCSCCS-----SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG--------GGS
T ss_pred cCEEECCCCccccCCc-----cccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhc--------cCC
Confidence 9999998887654332 122678899999887666666678888999999999998877555445 467
Q ss_pred CcccEEeccCCCCCCchh-hhhhcCCCcEEEeecCccccccc
Q 038877 246 RSLNTVSVDYCQKAKDLT-WLVFAQNLKELRIDSCYDVEEII 286 (298)
Q Consensus 246 ~~L~~L~l~~c~~l~~l~-~l~~~~~L~~L~l~~c~~l~~~~ 286 (298)
++|+.|++++| .++.++ ++..+++|++|++.++ .++.++
T Consensus 240 ~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~ 279 (330)
T 1xku_A 240 PHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIG 279 (330)
T ss_dssp TTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCC
T ss_pred CCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccC
Confidence 88999999988 677765 4667888888888887 455554
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=6.5e-25 Score=186.12 Aligned_cols=221 Identities=19% Similarity=0.252 Sum_probs=175.3
Q ss_pred CCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccchhhcCCCcccEEec
Q 038877 28 CPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSL 107 (298)
Q Consensus 28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l 107 (298)
.+++++|++++|.+..+|.. +..+++|++|++++| .+..+|..++.+++|++|++++|.+..+|..++.+++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChh-hhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 46788888888888877776 667888888888888 7777888888888888888888888888888888888888888
Q ss_pred cCCccCCCCchhhhc---------CCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccc
Q 038877 108 EGTRHLSIIPHQLIS---------GFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLA 178 (298)
Q Consensus 108 ~~~~~~~~~~~~~~~---------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~ 178 (298)
++|...+.+|.. ++ ++++|+.|++++|.+. .++..+..+++|+.|++++|....
T Consensus 158 ~~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~----------------~lp~~l~~l~~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 158 RACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIR----------------SLPASIANLQNLKSLKIRNSPLSA 220 (328)
T ss_dssp EEETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCC----------------CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred CCCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcC----------------cchHhhcCCCCCCEEEccCCCCCc
Confidence 887777777764 33 4888999999988873 356667888899999998887654
Q ss_pred hhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCC
Q 038877 179 VQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQK 258 (298)
Q Consensus 179 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 258 (298)
+ +......++|+.|++++|......+..+..+++|+.|++++|.........+ ..+++|+.|++++|..
T Consensus 221 l---~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~--------~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 221 L---GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI--------HRLTQLEKLDLRGCVN 289 (328)
T ss_dssp C---CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTG--------GGCTTCCEEECTTCTT
T ss_pred C---chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhh--------hcCCCCCEEeCCCCCc
Confidence 3 2234456788999999987766666778899999999999998877333334 5789999999999988
Q ss_pred CCchh-hhhhcCCCcEEEeec
Q 038877 259 AKDLT-WLVFAQNLKELRIDS 278 (298)
Q Consensus 259 l~~l~-~l~~~~~L~~L~l~~ 278 (298)
+..+| .+..+++|+.+.+..
T Consensus 290 ~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 290 LSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CCCCCGGGGGSCTTCEEECCG
T ss_pred hhhccHHHhhccCceEEeCCH
Confidence 88886 578899999998875
No 6
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=1.7e-24 Score=192.37 Aligned_cols=88 Identities=24% Similarity=0.406 Sum_probs=62.0
Q ss_pred CcccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCe
Q 038877 2 KVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHH 81 (298)
Q Consensus 2 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 81 (298)
.+..+++|++|++++|.+.+++.+..+++|++|++++|.+..+++ +..+++|++|++++| .+..++. +..+++|++
T Consensus 63 ~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~ 138 (466)
T 1o6v_A 63 GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-QITDIDP-LKNLTNLNR 138 (466)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCSE
T ss_pred chhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCC-CCCCChH-HcCCCCCCE
Confidence 456677777777777777776666777777777777777766555 667777777777777 6666654 667777777
Q ss_pred eeccCCcccccc
Q 038877 82 LDLSWTRIRGLP 93 (298)
Q Consensus 82 L~l~~~~~~~l~ 93 (298)
|++++|.+..++
T Consensus 139 L~l~~n~l~~~~ 150 (466)
T 1o6v_A 139 LELSSNTISDIS 150 (466)
T ss_dssp EEEEEEEECCCG
T ss_pred EECCCCccCCCh
Confidence 777777666544
No 7
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=6.9e-25 Score=190.52 Aligned_cols=261 Identities=15% Similarity=0.126 Sum_probs=152.8
Q ss_pred CCCccEEEeecCCCcCCCC--CCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCee
Q 038877 6 WEGAKRISLMKTGIQSPSE--IPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHL 82 (298)
Q Consensus 6 ~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L 82 (298)
+++++++++.++.+..+|. +..+++|++|++++|.+..++...+..+++|++|++++| .+..+ |..++.+++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEE
Confidence 4667777777777776664 356777777777777776665544677777777777777 56555 3456677777777
Q ss_pred eccCCcccccchh-hcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcccccc-----cc-----------
Q 038877 83 DLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQ-----EE----------- 145 (298)
Q Consensus 83 ~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-----~~----------- 145 (298)
++++|.++.+|.. +..+++|++|++++|.. ..++...++++++|+.|++++|.+....-. ..
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEE
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCcc-CccChhhccCCCCCCEEECCCCcCCccccccccccceeeccccccccc
Confidence 7777777766654 46777777777777743 334333467777777777777766431000 00
Q ss_pred --------ccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCccccccccccccc
Q 038877 146 --------GSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQ 217 (298)
Q Consensus 146 --------~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 217 (298)
..+........+ ....++|+.|+++++...... .....+.|+.|++++|......+..+..+++|+
T Consensus 202 ~~~~~L~~L~l~~n~l~~~~--~~~~~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 275 (390)
T 3o6n_A 202 AIPIAVEELDASHNSINVVR--GPVNVELTILKLQHNNLTDTA----WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 275 (390)
T ss_dssp ECCSSCSEEECCSSCCCEEE--CCCCSSCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred CCCCcceEEECCCCeeeecc--ccccccccEEECCCCCCcccH----HHcCCCCccEEECCCCcCCCcChhHccccccCC
Confidence 000000000000 001123444444444333221 122335566666666655554455566667777
Q ss_pred ceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchh-hhhhcCCCcEEEeecCcccccc
Q 038877 218 ELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT-WLVFAQNLKELRIDSCYDVEEI 285 (298)
Q Consensus 218 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~~~~L~~L~l~~c~~l~~~ 285 (298)
.|++++|.+..++... ..+++|+.|++++| .++.++ .+..+++|++|++.+|. ++.+
T Consensus 276 ~L~L~~n~l~~~~~~~---------~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~ 333 (390)
T 3o6n_A 276 RLYISNNRLVALNLYG---------QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTL 333 (390)
T ss_dssp EEECCSSCCCEEECSS---------SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCC
T ss_pred EEECCCCcCcccCccc---------CCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc-ccee
Confidence 7777776665533211 35778888888888 666664 35677888888888774 4443
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=9.1e-25 Score=194.65 Aligned_cols=267 Identities=19% Similarity=0.176 Sum_probs=198.3
Q ss_pred CcccCCCccEEEeecCCCcCC-C-CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccC
Q 038877 2 KVEEWEGAKRISLMKTGIQSP-S-EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVS 78 (298)
Q Consensus 2 ~~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~ 78 (298)
.|.++++|+.|++++|.+..+ | .+..+++|++|++++|.+..++...+..+++|++|++++| .+..+ |..+..+++
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~ 129 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYN 129 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTS-CCCEECTTTTTTCTT
T ss_pred HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCC-ccccCChhHcccccc
Confidence 477889999999999988874 3 4578899999999999888888766788999999999998 66644 567888889
Q ss_pred CCeeeccCCccccc-chhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcccccc--------cccccc
Q 038877 79 LHHLDLSWTRIRGL-PQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQ--------EEGSVL 149 (298)
Q Consensus 79 L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--------~~~~~~ 149 (298)
|++|++++|.+..+ +..+..+++|+.|++++| .+..++...+.++++|+.|++++|.+...... ....+.
T Consensus 130 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 208 (477)
T 2id5_A 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208 (477)
T ss_dssp CCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEE
T ss_pred CCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCC
Confidence 99999988888754 356788888888888888 44556655578888888888888776432111 000110
Q ss_pred cc-CchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcce
Q 038877 150 YD-DAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEE 228 (298)
Q Consensus 150 ~~-~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 228 (298)
.. ....++.......+|+.|+++++....+.. .....+++|+.|++++|.........+..+++|+.|++++|.+..
T Consensus 209 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 286 (477)
T 2id5_A 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY--LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV 286 (477)
T ss_dssp CCTTCCEECTTTTTTCCCSEEEEESSCCCSCCH--HHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSE
T ss_pred CCccccccCcccccCccccEEECcCCcccccCH--HHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccce
Confidence 00 012223333444589999999987654331 123345789999999998776666678899999999999999888
Q ss_pred eeecchhhhhccccccCCcccEEeccCCCCCCchhh--hhhcCCCcEEEeecCcc
Q 038877 229 MKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTW--LVFAQNLKELRIDSCYD 281 (298)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--l~~~~~L~~L~l~~c~~ 281 (298)
+....+ ..+++|+.|++++| .++.++. +..+++|++|++.+++-
T Consensus 287 ~~~~~~--------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 287 VEPYAF--------RGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp ECTTTB--------TTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred ECHHHh--------cCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCCc
Confidence 655555 57899999999999 7887753 46789999999988753
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=1.5e-24 Score=192.12 Aligned_cols=131 Identities=21% Similarity=0.286 Sum_probs=83.2
Q ss_pred CCccEEEeecCCCcCC-C-CCCCCCcccEEEecCCccc-ccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCee
Q 038877 7 EGAKRISLMKTGIQSP-S-EIPTCPRLVTFLLDGNWIE-EITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHL 82 (298)
Q Consensus 7 ~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L 82 (298)
++|++|++++|.+.++ | .+..+++|++|++++|.+. .++...+..+++|++|++++| .+..+ |..++.+++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhccCcccCCEE
Confidence 4577777777777663 3 3466777777777777654 554444667777777777777 55543 5566777777777
Q ss_pred eccCCcccc-cchh--hcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCc
Q 038877 83 DLSWTRIRG-LPQE--LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLW 138 (298)
Q Consensus 83 ~l~~~~~~~-l~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 138 (298)
++++|.++. .+.. +..+++|++|++++|...+..|..++.++++|+.|++++|.+.
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 777776663 3332 6667777777777764444444444566677777777666653
No 10
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=1.5e-24 Score=184.43 Aligned_cols=245 Identities=18% Similarity=0.212 Sum_probs=179.2
Q ss_pred CCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCeeecc
Q 038877 7 EGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHLDLS 85 (298)
Q Consensus 7 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~ 85 (298)
++++.++++++.+..+|... .+++++|++++|.+..+++..+..+++|++|++++| .+..+ |..++.+++|++|+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECC
Confidence 47899999999998887542 478999999999998777655899999999999999 77766 7789999999999999
Q ss_pred CCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCC
Q 038877 86 WTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKH 165 (298)
Q Consensus 86 ~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 165 (298)
+|.++.+|..+. ++|++|++++|. +..++...+.++++|+.|++++|.+.. ....+..+..+ +
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~~~l-~ 173 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLEN-------------SGFEPGAFDGL-K 173 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBG-------------GGSCTTSSCSC-C
T ss_pred CCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCcccc-------------CCCCcccccCC-c
Confidence 999998887665 899999999994 556666568999999999999998842 12234445555 7
Q ss_pred ccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccC
Q 038877 166 LNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGF 245 (298)
Q Consensus 166 L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 245 (298)
|+.++++++....++. ...+.|+.|++++|.........+..+++|+.|++++|.+..+....+ ..+
T Consensus 174 L~~L~l~~n~l~~l~~-----~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~--------~~l 240 (332)
T 2ft3_A 174 LNYLRISEAKLTGIPK-----DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL--------SFL 240 (332)
T ss_dssp CSCCBCCSSBCSSCCS-----SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG--------GGC
T ss_pred cCEEECcCCCCCccCc-----cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHh--------hCC
Confidence 7777777766544322 112566777777776655555566777777777777777666444334 456
Q ss_pred CcccEEeccCCCCCCchh-hhhhcCCCcEEEeecCcccccc
Q 038877 246 RSLNTVSVDYCQKAKDLT-WLVFAQNLKELRIDSCYDVEEI 285 (298)
Q Consensus 246 ~~L~~L~l~~c~~l~~l~-~l~~~~~L~~L~l~~c~~l~~~ 285 (298)
++|+.|++++| .++.++ .+..+++|++|++.++ .++.+
T Consensus 241 ~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~ 279 (332)
T 2ft3_A 241 PTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-NITKV 279 (332)
T ss_dssp TTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS-CCCBC
T ss_pred CCCCEEECCCC-cCeecChhhhcCccCCEEECCCC-CCCcc
Confidence 77777777776 566654 3556677777777765 34444
No 11
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=2.1e-24 Score=185.02 Aligned_cols=254 Identities=19% Similarity=0.203 Sum_probs=136.2
Q ss_pred CccEEEeecCCCcCCCC--CCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCcc-ccCccCCCeeec
Q 038877 8 GAKRISLMKTGIQSPSE--IPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSG-ISNLVSLHHLDL 84 (298)
Q Consensus 8 ~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~l 84 (298)
+|++|++++|.+..++. +..+++|++|++++|.+..+++..+..+++|++|++++| .++.+|.. ++.+++|++|++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEEC
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEEC
Confidence 55666666665555432 355566666666666555444333555566666666666 55555443 555566666666
Q ss_pred cCCcccccch--hhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcC
Q 038877 85 SWTRIRGLPQ--ELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLG 162 (298)
Q Consensus 85 ~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (298)
++|.++.++. .+..+++|++|++++|...+.++...++++++|+.|++++|.+. ...+..+..
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~---------------~~~~~~l~~ 196 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ---------------SYEPKSLKS 196 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC---------------EECTTTTTT
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC---------------ccCHHHHhc
Confidence 6665555554 45556666666665553334443333555666666666665552 223444555
Q ss_pred CCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccc---cccccccceecccCCcceeeecchhhhhc
Q 038877 163 LKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHL---AYMENLQELVILNSDLEEMKIDSAEEVKK 239 (298)
Q Consensus 163 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 239 (298)
+++|+.++++++........ .....+.|+.|++++|.........+ ...+.++.+++.++.+.......+. .
T Consensus 197 l~~L~~L~l~~n~l~~~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~--~- 271 (353)
T 2z80_A 197 IQNVSHLILHMKQHILLLEI--FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM--K- 271 (353)
T ss_dssp CSEEEEEEEECSCSTTHHHH--HHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHH--H-
T ss_pred cccCCeecCCCCccccchhh--hhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhH--H-
Confidence 56666666665554322211 11223556666666665433322221 1233444455544443331111110 0
Q ss_pred cccccCCcccEEeccCCCCCCchhh--hhhcCCCcEEEeecCccccc
Q 038877 240 LFRSGFRSLNTVSVDYCQKAKDLTW--LVFAQNLKELRIDSCYDVEE 284 (298)
Q Consensus 240 ~~~~~~~~L~~L~l~~c~~l~~l~~--l~~~~~L~~L~l~~c~~l~~ 284 (298)
.-..+++|+.|++++| .++.++. +..+++|++|++.+++-.-+
T Consensus 272 -~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 272 -LLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp -HHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred -HHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 0146789999999998 7777764 36789999999998864433
No 12
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=1.6e-24 Score=182.05 Aligned_cols=243 Identities=18% Similarity=0.161 Sum_probs=149.1
Q ss_pred cEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC---CccccCccCCCeeeccC
Q 038877 10 KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL---PSGISNLVSLHHLDLSW 86 (298)
Q Consensus 10 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---p~~~~~l~~L~~L~l~~ 86 (298)
+.++++++.++.+|.. -.+++++|++++|.+..++..++..+++|++|++++| .+... |..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCC-CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCC
Confidence 4566666666666542 2356777777777776666655667777777777777 55533 44555667777777777
Q ss_pred CcccccchhhcCCCcccEEeccCCccCCCCch-hhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCC
Q 038877 87 TRIRGLPQELKALEKLRYLSLEGTRHLSIIPH-QLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKH 165 (298)
Q Consensus 87 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 165 (298)
|.+..++..+..+++|++|++++|.. ..++. ..+.++++|+.|++++|.+. ...+..+..+++
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~---------------~~~~~~~~~l~~ 151 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTR---------------VAFNGIFNGLSS 151 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEE-ESSTTTTTTTTCTTCCEEECTTSCCE---------------ECSTTTTTTCTT
T ss_pred CccccChhhcCCCCCCCEEECCCCcc-cccccchhhhhccCCCEEECCCCcCC---------------ccchhhcccCcC
Confidence 77766666667777777777777633 33332 23667777777777777662 233445566677
Q ss_pred ccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccC
Q 038877 166 LNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGF 245 (298)
Q Consensus 166 L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 245 (298)
|+.|+++++.... ...+......++|+.|++++|.........+..+++|+.|++++|.+..++...+ ..+
T Consensus 152 L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--------~~l 222 (306)
T 2z66_A 152 LEVLKMAGNSFQE-NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY--------KCL 222 (306)
T ss_dssp CCEEECTTCEEGG-GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG--------TTC
T ss_pred CCEEECCCCcccc-ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhc--------cCc
Confidence 7777776654322 0122233444667777777776555555556667777777777777665433333 456
Q ss_pred CcccEEeccCCCCCCchh--hhhhcC-CCcEEEeecCc
Q 038877 246 RSLNTVSVDYCQKAKDLT--WLVFAQ-NLKELRIDSCY 280 (298)
Q Consensus 246 ~~L~~L~l~~c~~l~~l~--~l~~~~-~L~~L~l~~c~ 280 (298)
++|+.|++++| .++... .+..+| +|++|++.+++
T Consensus 223 ~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 223 NSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TTCCEEECTTS-CCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ccCCEeECCCC-CCcccCHHHHHhhhccCCEEEccCCC
Confidence 77777777777 444432 234453 67777777654
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=5.4e-24 Score=199.90 Aligned_cols=258 Identities=19% Similarity=0.224 Sum_probs=183.7
Q ss_pred CCCccEEEeecCCCcC-CC-CCCCCCcccEEEecCCccc-ccCchHHhcCCCccEEEccCCcCCc-cCCccccCccCCCe
Q 038877 6 WEGAKRISLMKTGIQS-PS-EIPTCPRLVTFLLDGNWIE-EITDGFFRSMSSLRVLSLRRNLALS-KLPSGISNLVSLHH 81 (298)
Q Consensus 6 ~~~L~~L~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~ 81 (298)
+++|+.|++++|.+.+ +| .+..+++|++|++++|.+. .+|.. +..+++|++|++++| .+. .+|..+..+++|++
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~ 470 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLN-MLEGEIPQELMYVKTLET 470 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH-HhcCCCCCEEECCCC-cccCcCCHHHcCCCCceE
Confidence 4566666666666654 44 3466777777777777666 34443 677777777777777 444 56767777777777
Q ss_pred eeccCCccc-ccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhh
Q 038877 82 LDLSWTRIR-GLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKEL 160 (298)
Q Consensus 82 L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 160 (298)
|++++|.+. .+|..+..+++|++|++++|...+.+|.. ++++++|+.|++++|.+ .+..+..+
T Consensus 471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l---------------~~~~p~~l 534 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSF---------------SGNIPAEL 534 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCC---------------EEECCGGG
T ss_pred EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH-HhcCCCCCEEECCCCcc---------------cCcCCHHH
Confidence 777777766 56677777777777777777665566664 77777788888877777 44567778
Q ss_pred cCCCCccEEEEEecCcc-chhh-h--------------------------------------------------------
Q 038877 161 LGLKHLNVLSWSLHSSL-AVQK-F-------------------------------------------------------- 182 (298)
Q Consensus 161 ~~l~~L~~l~l~~~~~~-~~~~-~-------------------------------------------------------- 182 (298)
..+++|+.+++++|... .++. +
T Consensus 535 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (768)
T 3rgz_A 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614 (768)
T ss_dssp GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSC
T ss_pred cCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccc
Confidence 88888999988876543 1110 0
Q ss_pred ----------ccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCCcccEEe
Q 038877 183 ----------LKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVS 252 (298)
Q Consensus 183 ----------~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 252 (298)
+......+.++.|++++|......+..++.++.|+.|++++|.+....+..+ ..+++|+.|+
T Consensus 615 l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l--------~~L~~L~~Ld 686 (768)
T 3rgz_A 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV--------GDLRGLNILD 686 (768)
T ss_dssp TTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--------GGCTTCCEEE
T ss_pred cccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHH--------hCCCCCCEEE
Confidence 0011223568899999998777777889999999999999999987333444 5789999999
Q ss_pred ccCCCCCC-chh-hhhhcCCCcEEEeecCcccccccccCc
Q 038877 253 VDYCQKAK-DLT-WLVFAQNLKELRIDSCYDVEEIISVDK 290 (298)
Q Consensus 253 l~~c~~l~-~l~-~l~~~~~L~~L~l~~c~~l~~~~~~~~ 290 (298)
+++| .++ .+| .+..++.|++|++++++--..+|....
T Consensus 687 Ls~N-~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~ 725 (768)
T 3rgz_A 687 LSSN-KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ 725 (768)
T ss_dssp CCSS-CCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSS
T ss_pred CCCC-cccCcCChHHhCCCCCCEEECcCCcccccCCCchh
Confidence 9999 555 454 467899999999999976666665443
No 14
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=2.7e-25 Score=187.37 Aligned_cols=246 Identities=15% Similarity=0.150 Sum_probs=145.5
Q ss_pred CCccEEEeecCCCcC---CC-CCCCCCcccEEEecC-Cccc-ccCchHHhcCCCccEEEccCCcCCc-cCCccccCccCC
Q 038877 7 EGAKRISLMKTGIQS---PS-EIPTCPRLVTFLLDG-NWIE-EITDGFFRSMSSLRVLSLRRNLALS-KLPSGISNLVSL 79 (298)
Q Consensus 7 ~~L~~L~l~~~~~~~---~~-~~~~~~~L~~L~l~~-~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~-~~p~~~~~l~~L 79 (298)
.+++.|+++++.+.+ +| .+..+++|++|++++ |.+. .+|.. +..+++|++|++++| .+. .+|..+..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT-NVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE-CCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCC-eeCCcCCHHHhCCCCC
Confidence 356667777766653 44 346667777777764 5554 44444 666777777777776 554 556666667777
Q ss_pred CeeeccCCccc-ccchhhcCCCcccEEeccCCccCCCCchhhhcCCC-cccEEEeeccCCccccccccccccccCchhHH
Q 038877 80 HHLDLSWTRIR-GLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFS-KLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLM 157 (298)
Q Consensus 80 ~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (298)
++|++++|.+. .+|..+..+++|++|++++|...+.+|.. ++.++ +|+.|++++|.+. ...+
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~---------------~~~~ 191 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLT---------------GKIP 191 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEE---------------EECC
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeee---------------ccCC
Confidence 77777777666 56666667777777777776444455654 56665 6777777776662 2344
Q ss_pred HhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhh
Q 038877 158 KELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEV 237 (298)
Q Consensus 158 ~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 237 (298)
..+..++ |+.|+++++..... .+......+.|+.|++++|....... .+..+++|++|++++|.+.......+
T Consensus 192 ~~~~~l~-L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l--- 264 (313)
T 1ogq_A 192 PTFANLN-LAFVDLSRNMLEGD--ASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGL--- 264 (313)
T ss_dssp GGGGGCC-CSEEECCSSEEEEC--CGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGG---
T ss_pred hHHhCCc-ccEEECcCCcccCc--CCHHHhcCCCCCEEECCCCceeeecC-cccccCCCCEEECcCCcccCcCChHH---
Confidence 4455554 67777666554321 12223334566666666665432222 25556667777777666654222333
Q ss_pred hccccccCCcccEEeccCCCCCC-chhhhhhcCCCcEEEeecCcccc
Q 038877 238 KKLFRSGFRSLNTVSVDYCQKAK-DLTWLVFAQNLKELRIDSCYDVE 283 (298)
Q Consensus 238 ~~~~~~~~~~L~~L~l~~c~~l~-~l~~l~~~~~L~~L~l~~c~~l~ 283 (298)
..+++|+.|++++| .++ .+|....+++|+++++.+++.+.
T Consensus 265 -----~~l~~L~~L~Ls~N-~l~~~ip~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 265 -----TQLKFLHSLNVSFN-NLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp -----GGCTTCCEEECCSS-EEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred -----hcCcCCCEEECcCC-cccccCCCCccccccChHHhcCCCCcc
Confidence 35666777777766 333 44444556666666666665444
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=1.3e-23 Score=186.54 Aligned_cols=252 Identities=18% Similarity=0.213 Sum_probs=117.0
Q ss_pred cccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-----------
Q 038877 3 VEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS----------- 71 (298)
Q Consensus 3 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~----------- 71 (298)
+.++++|++|++++|.+..++.+..+++|++|++++|.+..++. +..+++|++|++++| .+..++.
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~ 162 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN-TISDISALSGLTSLQQLS 162 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEE-EECCCGGGTTCTTCSEEE
T ss_pred hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCC-ccCCChhhccCCcccEee
Confidence 45556666666666666555445556666666666665554443 455555555555555 3332211
Q ss_pred ---------cccCccCCCeeeccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccc
Q 038877 72 ---------GISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKE 142 (298)
Q Consensus 72 ---------~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 142 (298)
.+..+++|++|++++|.+..++ .+..+++|++|++++|.. ...+. ++.+++|+.|++++|.+.....
T Consensus 163 l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l-~~~~~--~~~l~~L~~L~l~~n~l~~~~~ 238 (466)
T 1o6v_A 163 FGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQI-SDITP--LGILTNLDELSLNGNQLKDIGT 238 (466)
T ss_dssp EEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCC-CCCGG--GGGCTTCCEEECCSSCCCCCGG
T ss_pred cCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCcc-ccccc--ccccCCCCEEECCCCCcccchh
Confidence 1445556666666666555543 245555666666665532 22222 3445555555555554422000
Q ss_pred c------ccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccc
Q 038877 143 Q------EEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENL 216 (298)
Q Consensus 143 ~------~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 216 (298)
- ...++......... .+..+++|+.|+++++....... ...++.|+.|++++|...... .+..+++|
T Consensus 239 l~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L 311 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNISP----LAGLTALTNLELNENQLEDIS--PISNLKNL 311 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCSCCG--GGGGCTTC
T ss_pred hhcCCCCCEEECCCCccccch-hhhcCCCCCEEECCCCccCcccc----ccCCCccCeEEcCCCcccCch--hhcCCCCC
Confidence 0 00000000000011 14445555555555554433222 122344555555555433222 14455555
Q ss_pred cceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchhhhhhcCCCcEEEeecC
Q 038877 217 QELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSC 279 (298)
Q Consensus 217 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~L~~L~l~~c 279 (298)
+.|++++|.+..... + ..+++|+.|++++| .+++++.+..+++|++|++.+|
T Consensus 312 ~~L~L~~n~l~~~~~--~--------~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 312 TYLTLYFNNISDISP--V--------SSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHN 363 (466)
T ss_dssp SEEECCSSCCSCCGG--G--------GGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS
T ss_pred CEEECcCCcCCCchh--h--------ccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCC
Confidence 555555555444211 1 24455555555555 4444444444555555555544
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=3.8e-24 Score=196.06 Aligned_cols=253 Identities=18% Similarity=0.144 Sum_probs=163.9
Q ss_pred cccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCch-------------------HHhcCCCccEEEccCC
Q 038877 3 VEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDG-------------------FFRSMSSLRVLSLRRN 63 (298)
Q Consensus 3 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-------------------~~~~~~~L~~L~l~~~ 63 (298)
+..+++|+.|++.++.+..+|.+..+++|++|++++|.++.+|.. .+..+++|++|++++|
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n 360 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRN 360 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSS
T ss_pred cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCC
Confidence 344455555555555555554444455555555555544433310 1345566666666666
Q ss_pred cCCccC---CccccCccCCCeeeccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccc
Q 038877 64 LALSKL---PSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSR 140 (298)
Q Consensus 64 ~~~~~~---p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 140 (298)
.+... |..+..+++|++|++++|.+..+|..+..+++|+.|++++|...+..+...+.++++|+.|++++|.+
T Consensus 361 -~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l--- 436 (606)
T 3vq2_A 361 -ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT--- 436 (606)
T ss_dssp -CEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC---
T ss_pred -ccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC---
Confidence 44433 55566677777777777766666666777777777777777544444423367777777777777776
Q ss_pred cccccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCccccccccccccccee
Q 038877 141 KEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELV 220 (298)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 220 (298)
....+..+..+++|+.|+++++.... ...+.....+++|++|++++|......+..+..+++|+.|+
T Consensus 437 ------------~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 503 (606)
T 3vq2_A 437 ------------KIDFDGIFLGLTSLNTLKMAGNSFKD-NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503 (606)
T ss_dssp ------------EECCTTTTTTCTTCCEEECTTCEEGG-GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ------------CccchhhhcCCCCCCEEECCCCcCCC-cchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence 33455667778888888887775432 11233445567888888888876666666788888899999
Q ss_pred cccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchhh-hhhcC-CCcEEEeecCcc
Q 038877 221 ILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTW-LVFAQ-NLKELRIDSCYD 281 (298)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-l~~~~-~L~~L~l~~c~~ 281 (298)
+++|.+.......+ ..+++|+.|++++| .++.++. +..++ +|++|++.+++-
T Consensus 504 Ls~N~l~~~~~~~~--------~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 504 MSHNNLLFLDSSHY--------NQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp CCSSCCSCEEGGGT--------TTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred CCCCcCCCcCHHHc--------cCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCCc
Confidence 98888877555555 56888999999988 6777753 56676 589999888653
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=2.4e-24 Score=190.68 Aligned_cols=269 Identities=14% Similarity=0.126 Sum_probs=173.7
Q ss_pred CcccCCCccEEEeecCCCcC-CC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCcc-CCcc--ccC
Q 038877 2 KVEEWEGAKRISLMKTGIQS-PS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSK-LPSG--ISN 75 (298)
Q Consensus 2 ~~~~~~~L~~L~l~~~~~~~-~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~p~~--~~~ 75 (298)
.++++++|++|++++|.+.. ++ .+..+++|++|++++|.+..+.+..+..+++|++|++++| .+.. .|.. ++.
T Consensus 49 ~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~ 127 (455)
T 3v47_A 49 SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC-NLDGAVLSGNFFKP 127 (455)
T ss_dssp TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTS-CCBTHHHHSSTTTT
T ss_pred HhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCC-CCCccccCcccccC
Confidence 47889999999999998864 43 3588999999999999988665544889999999999999 6663 3433 888
Q ss_pred ccCCCeeeccCCccccc-chh-hcCCCcccEEeccCCccCCCCchhhhc-------------------------------
Q 038877 76 LVSLHHLDLSWTRIRGL-PQE-LKALEKLRYLSLEGTRHLSIIPHQLIS------------------------------- 122 (298)
Q Consensus 76 l~~L~~L~l~~~~~~~l-~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~------------------------------- 122 (298)
+++|++|++++|.+..+ |.. +..+++|++|++++|...+..+.. +.
T Consensus 128 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 206 (455)
T 3v47_A 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED-LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206 (455)
T ss_dssp CTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT-SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHC
T ss_pred cccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh-hhccccccccccccccCcccccchhhccccccc
Confidence 99999999999988865 444 789999999999998654443332 22
Q ss_pred ---CCCcccEEEeeccCCccccccc-----------------------------------------------cccccccC
Q 038877 123 ---GFSKLEVLRLLWCGLWSRKEQE-----------------------------------------------EGSVLYDD 152 (298)
Q Consensus 123 ---~l~~L~~L~l~~~~~~~~~~~~-----------------------------------------------~~~~~~~~ 152 (298)
.+++|+.|++++|.+....... ..++....
T Consensus 207 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 286 (455)
T 3v47_A 207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK 286 (455)
T ss_dssp CTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC
T ss_pred cccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc
Confidence 3467899999888764311100 00000000
Q ss_pred -chhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeee
Q 038877 153 -AEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKI 231 (298)
Q Consensus 153 -~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 231 (298)
....+..+..+++|+.|+++++...... +......++|+.|++++|.........+..+++|+.|++++|.+..+..
T Consensus 287 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 364 (455)
T 3v47_A 287 IFALLKSVFSHFTDLEQLTLAQNEINKID--DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD 364 (455)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT
T ss_pred ccccchhhcccCCCCCEEECCCCcccccC--hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccCh
Confidence 0112233455556666666555443221 1122234556666666665544444556666667777776666655444
Q ss_pred cchhhhhccccccCCcccEEeccCCCCCCchhh--hhhcCCCcEEEeecCcccc
Q 038877 232 DSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTW--LVFAQNLKELRIDSCYDVE 283 (298)
Q Consensus 232 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--l~~~~~L~~L~l~~c~~l~ 283 (298)
..+ ..+++|+.|++++| .++.++. +..+++|++|++.+++---
T Consensus 365 ~~~--------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 365 QSF--------LGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp TTT--------TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hhc--------cccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCccc
Confidence 444 45677777777777 5666542 4567777777777664433
No 18
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=9.2e-24 Score=186.25 Aligned_cols=242 Identities=17% Similarity=0.194 Sum_probs=152.8
Q ss_pred ccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCC-ccccCccCCCeeeccCC
Q 038877 9 AKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLP-SGISNLVSLHHLDLSWT 87 (298)
Q Consensus 9 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~ 87 (298)
.+.++..+..++.+|... .++++.|++++|.+..++...+..+++|++|++++| .+..++ ..+..+++|++|++++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCC
Confidence 456666666666665431 256777777777776655444677777777777777 565543 45667777777777777
Q ss_pred cccccch-hhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCc
Q 038877 88 RIRGLPQ-ELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHL 166 (298)
Q Consensus 88 ~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 166 (298)
.++.++. .+..+++|++|++++|. +..++...+.++++|+.|++++|.... ......+..+++|
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~--------------~i~~~~~~~l~~L 187 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLS--------------YISEGAFEGLSNL 187 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCC--------------EECTTTTTTCSSC
T ss_pred cCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcc--------------eeCcchhhccccc
Confidence 7776654 46677777777777773 445554446777777777777644311 1112345566777
Q ss_pred cEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCC
Q 038877 167 NVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFR 246 (298)
Q Consensus 167 ~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (298)
+.|+++++....++. ....++|+.|++++|.........+..+++|+.|++++|.+..+....+ ..++
T Consensus 188 ~~L~L~~n~l~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--------~~l~ 255 (440)
T 3zyj_A 188 RYLNLAMCNLREIPN----LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF--------DNLQ 255 (440)
T ss_dssp CEEECTTSCCSSCCC----CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSS--------TTCT
T ss_pred CeecCCCCcCccccc----cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhh--------cCCC
Confidence 777777665544332 2334566777777776555555567777777777777777766544444 4567
Q ss_pred cccEEeccCCCCCCchhh--hhhcCCCcEEEeecCc
Q 038877 247 SLNTVSVDYCQKAKDLTW--LVFAQNLKELRIDSCY 280 (298)
Q Consensus 247 ~L~~L~l~~c~~l~~l~~--l~~~~~L~~L~l~~c~ 280 (298)
+|+.|++++| .++.++. +..+++|++|++.+++
T Consensus 256 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 256 SLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 7777777777 5666542 3456777777776654
No 19
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=1.3e-23 Score=185.80 Aligned_cols=121 Identities=18% Similarity=0.212 Sum_probs=69.5
Q ss_pred cccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCee
Q 038877 3 VEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHL 82 (298)
Q Consensus 3 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 82 (298)
++++++|++|++++|.+.++|.+..+++|++|++++|.+..++ ++.+++|++|++++| .+..++ ++.+++|++|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEE
T ss_pred hhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCC-CCceee--cCCCCcCCEE
Confidence 3456666666666666666665566666666666666665543 455666666666666 555543 5556666666
Q ss_pred eccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeecc
Q 038877 83 DLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWC 135 (298)
Q Consensus 83 ~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 135 (298)
++++|.++.++ ++.+++|++|++++|.. ..++ ++++++|+.|++++|
T Consensus 112 ~L~~N~l~~l~--~~~l~~L~~L~l~~N~l-~~l~---l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 112 NCDTNKLTKLD--VSQNPLLTYLNCARNTL-TEID---VSHNTQLTELDCHLN 158 (457)
T ss_dssp ECCSSCCSCCC--CTTCTTCCEEECTTSCC-SCCC---CTTCTTCCEEECTTC
T ss_pred ECCCCcCCeec--CCCCCcCCEEECCCCcc-ceec---cccCCcCCEEECCCC
Confidence 66666655553 55555666666655532 2222 344444555554444
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=1.6e-24 Score=199.34 Aligned_cols=133 Identities=13% Similarity=0.181 Sum_probs=104.7
Q ss_pred CcccCCCccEEEeecCCCcC------------------CCCC-C--CCCcccEEEecCCccc-ccCchHHhcCCCccEEE
Q 038877 2 KVEEWEGAKRISLMKTGIQS------------------PSEI-P--TCPRLVTFLLDGNWIE-EITDGFFRSMSSLRVLS 59 (298)
Q Consensus 2 ~~~~~~~L~~L~l~~~~~~~------------------~~~~-~--~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~ 59 (298)
.++++++|++|++++|.+++ +|.. . .+++|++|++++|.+. .+|.. +..+++|++|+
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~ 279 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLIN 279 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEE
T ss_pred HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEE
Confidence 37788889999999988888 7744 6 7889999999988765 66655 88888999999
Q ss_pred ccCCcCCc--cCCccccCc------cCCCeeeccCCcccccch--hhcCCCcccEEeccCCccCCCCchhhhcCCCcccE
Q 038877 60 LRRNLALS--KLPSGISNL------VSLHHLDLSWTRIRGLPQ--ELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEV 129 (298)
Q Consensus 60 l~~~~~~~--~~p~~~~~l------~~L~~L~l~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 129 (298)
+++|..++ .+|..++.+ ++|++|++++|.++.+|. .++.+++|++|++++|...+.+| . ++++++|+.
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~ 357 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLAS 357 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESE
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCE
Confidence 98883155 477777665 888888888888888887 78888888888888885544777 3 777788888
Q ss_pred EEeeccCC
Q 038877 130 LRLLWCGL 137 (298)
Q Consensus 130 L~l~~~~~ 137 (298)
|++++|.+
T Consensus 358 L~L~~N~l 365 (636)
T 4eco_A 358 LNLAYNQI 365 (636)
T ss_dssp EECCSSEE
T ss_pred EECCCCcc
Confidence 88887766
No 21
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=1.3e-23 Score=185.86 Aligned_cols=242 Identities=19% Similarity=0.196 Sum_probs=164.7
Q ss_pred ccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCeeeccCC
Q 038877 9 AKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHLDLSWT 87 (298)
Q Consensus 9 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~ 87 (298)
.+.++..+..++.+|.. -.+++++|++++|.+..+++..+..+++|++|++++| .+..+ |..+..+++|++|++++|
T Consensus 56 ~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCC
Confidence 45666666666666642 1357788888888777665544777888888888887 66655 356777788888888888
Q ss_pred cccccch-hhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCc
Q 038877 88 RIRGLPQ-ELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHL 166 (298)
Q Consensus 88 ~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 166 (298)
.++.++. .+..+++|++|++++|. +..++...+.++++|+.|++++|.... ......+..+++|
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~--------------~i~~~~~~~l~~L 198 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLE--------------YISEGAFEGLFNL 198 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCC--------------EECTTTTTTCTTC
T ss_pred cCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCcc--------------ccChhhccCCCCC
Confidence 7776664 36777888888888773 455555457778888888887744311 1112346677778
Q ss_pred cEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCC
Q 038877 167 NVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFR 246 (298)
Q Consensus 167 ~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (298)
+.|+++++....++. ....++|+.|++++|.........+..+++|+.|++++|.+..+....+ ..++
T Consensus 199 ~~L~L~~n~l~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--------~~l~ 266 (452)
T 3zyi_A 199 KYLNLGMCNIKDMPN----LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF--------DGLA 266 (452)
T ss_dssp CEEECTTSCCSSCCC----CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTT--------TTCT
T ss_pred CEEECCCCccccccc----ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHh--------cCCC
Confidence 888887776554432 2334667888888877666666667777888888888887776555544 4677
Q ss_pred cccEEeccCCCCCCchhh--hhhcCCCcEEEeecCc
Q 038877 247 SLNTVSVDYCQKAKDLTW--LVFAQNLKELRIDSCY 280 (298)
Q Consensus 247 ~L~~L~l~~c~~l~~l~~--l~~~~~L~~L~l~~c~ 280 (298)
+|+.|++++| .++.++. +..+++|++|++.+++
T Consensus 267 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 267 SLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 8888888887 6666642 4567788888887764
No 22
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=8.2e-24 Score=179.34 Aligned_cols=221 Identities=19% Similarity=0.200 Sum_probs=186.5
Q ss_pred CCCccEEEeecCCCcCCCC-CCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeec
Q 038877 6 WEGAKRISLMKTGIQSPSE-IPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDL 84 (298)
Q Consensus 6 ~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 84 (298)
..+++.|+++++.+..+|. +..+++|++|++++|.+..+|.. ++.+++|++|++++| .+..+|..++.+++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARN-PLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEEC
Confidence 4789999999999999875 57899999999999999888877 899999999999999 88899999999999999999
Q ss_pred cCC-cccccchhhcC---------CCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCch
Q 038877 85 SWT-RIRGLPQELKA---------LEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAE 154 (298)
Q Consensus 85 ~~~-~~~~l~~~~~~---------l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 154 (298)
++| ....+|..+.. +++|++|++++|. +..+|.. ++++++|+.|++++|.+..
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~-l~~l~~L~~L~L~~N~l~~--------------- 220 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPAS-IANLQNLKSLKIRNSPLSA--------------- 220 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGG-GGGCTTCCEEEEESSCCCC---------------
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHh-hcCCCCCCEEEccCCCCCc---------------
Confidence 997 44577766554 9999999999994 5588876 8999999999999999843
Q ss_pred hHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecch
Q 038877 155 PLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSA 234 (298)
Q Consensus 155 ~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 234 (298)
++..+..+++|+.|++++|.... .++......++|+.|++++|......+..+..+++|+.|++++|......+..+
T Consensus 221 -l~~~l~~l~~L~~L~Ls~n~~~~--~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 221 -LGPAIHHLPKLEELDLRGCTALR--NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp -CCGGGGGCTTCCEEECTTCTTCC--BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred -CchhhccCCCCCEEECcCCcchh--hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 55578899999999999876533 233444556889999999998777777779999999999999999888333444
Q ss_pred hhhhccccccCCcccEEeccCC
Q 038877 235 EEVKKLFRSGFRSLNTVSVDYC 256 (298)
Q Consensus 235 ~~~~~~~~~~~~~L~~L~l~~c 256 (298)
..+++|+.+++...
T Consensus 298 --------~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 298 --------AQLPANCIILVPPH 311 (328)
T ss_dssp --------GGSCTTCEEECCGG
T ss_pred --------hhccCceEEeCCHH
Confidence 57899999988865
No 23
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=5.7e-24 Score=194.87 Aligned_cols=266 Identities=17% Similarity=0.190 Sum_probs=165.4
Q ss_pred cccCCCccEEEeecCCCcCCC-CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCc-cCCc-cccCccCC
Q 038877 3 VEEWEGAKRISLMKTGIQSPS-EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALS-KLPS-GISNLVSL 79 (298)
Q Consensus 3 ~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~p~-~~~~l~~L 79 (298)
++++++|+.|++++|.+..+| .+..+++|++|++++|.+..+++..+..+++|++|++++| .+. .+|. .+..+++|
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN-TKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSC-SSCCBCCSSTTTTCTTC
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCC-CcccccchhhhhccCcC
Confidence 778999999999999999987 4588999999999999988776555889999999999999 554 5654 48889999
Q ss_pred CeeeccCCccccc---chhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcccccc---------cccc
Q 038877 80 HHLDLSWTRIRGL---PQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQ---------EEGS 147 (298)
Q Consensus 80 ~~L~l~~~~~~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---------~~~~ 147 (298)
++|++++|.+..+ +..+..+++|++|++++|...+..+. .+.++++|+.|++++|.+...... ...+
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE-AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT-TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHH-HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 9999999988754 56688888999999988854444344 378888888888888877431100 0001
Q ss_pred ccccC-chhHHHhhcCCCCccEEEEEecCccchh-hhccccccccceeEEEEeccCCCCcccccccccccccceecccCC
Q 038877 148 VLYDD-AEPLMKELLGLKHLNVLSWSLHSSLAVQ-KFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSD 225 (298)
Q Consensus 148 ~~~~~-~~~~~~~l~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 225 (298)
+.... ....+..+..+++|+.|+++++...... ........+++|+.|++++|......+.++..++.|+.|++++|.
T Consensus 432 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp CTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence 11111 1112233444455555555544432210 001112233455555555554444444445555555555555555
Q ss_pred cceeeecchhhhhccccccCCcccEEeccCCCCCCchh--hhhhcCCCcEEEeecCc
Q 038877 226 LEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT--WLVFAQNLKELRIDSCY 280 (298)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~~~~L~~L~l~~c~ 280 (298)
+.......+ ..++.| .|++++| .++.++ .+..+++|++|++.+++
T Consensus 512 l~~~~~~~l--------~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 512 LTSSSIEAL--------SHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp CCGGGGGGG--------TTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred cCcCChhHh--------Cccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCCC
Confidence 544333333 345555 5666665 444432 23456666666666654
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=1.5e-23 Score=192.15 Aligned_cols=61 Identities=16% Similarity=0.118 Sum_probs=35.4
Q ss_pred cccCCCccEEEeecCCCcCC--CCCCCCCcccEEEecCCcccccCchHHhcCCCcc--EEEccCC
Q 038877 3 VEEWEGAKRISLMKTGIQSP--SEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLR--VLSLRRN 63 (298)
Q Consensus 3 ~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~--~L~l~~~ 63 (298)
++++++|++|++++|.+.++ |....+++|++|++++|.+..+++..+..+++|+ .|++++|
T Consensus 125 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred hccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence 44556666666666666553 4444466666666666666555444455666665 5555555
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=9e-24 Score=193.12 Aligned_cols=256 Identities=16% Similarity=0.138 Sum_probs=125.8
Q ss_pred CCccEEEeecCCCcCCCC--CCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCC-ccccCccCCCeee
Q 038877 7 EGAKRISLMKTGIQSPSE--IPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLP-SGISNLVSLHHLD 83 (298)
Q Consensus 7 ~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~ 83 (298)
.+++.+++.++.+..+|. +..+++|++|++++|.+..+++..+..+++|++|++++| .+..+| ..++.+++|++|+
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEE
Confidence 444555555555544443 144555555555555554444333455555555555555 444332 2344555555555
Q ss_pred ccCCcccccchh-hcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcccc---------------------
Q 038877 84 LSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRK--------------------- 141 (298)
Q Consensus 84 l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--------------------- 141 (298)
+++|.+..+|.. ++.+++|++|++++|... .++...++++++|+.|++++|.+....
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~ 208 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 208 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCC-CCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc
Confidence 555555544433 345555555555555322 222222455555555555555442200
Q ss_pred cc---ccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccc
Q 038877 142 EQ---EEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQE 218 (298)
Q Consensus 142 ~~---~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 218 (298)
.. ...++.......++. ...++|+.|+++++...... .....+.|+.|++++|......+..+..+++|+.
T Consensus 209 ~~~~L~~L~ls~n~l~~~~~--~~~~~L~~L~L~~n~l~~~~----~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 282 (597)
T 3oja_B 209 IPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDTA----WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 282 (597)
T ss_dssp CCTTCSEEECCSSCCCEEEC--SCCSCCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred CCchhheeeccCCccccccc--ccCCCCCEEECCCCCCCCCh----hhccCCCCCEEECCCCccCCCCHHHhcCccCCCE
Confidence 00 000000000000000 01124445555444433221 1223456677777776655555556666777777
Q ss_pred eecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchh-hhhhcCCCcEEEeecCc
Q 038877 219 LVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT-WLVFAQNLKELRIDSCY 280 (298)
Q Consensus 219 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~~~~L~~L~l~~c~ 280 (298)
|++++|.+..++... ..+++|+.|++++| .++.++ .+..+++|++|++.+|.
T Consensus 283 L~Ls~N~l~~l~~~~---------~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 283 LYISNNRLVALNLYG---------QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp EECTTSCCCEEECSS---------SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC
T ss_pred EECCCCCCCCCCccc---------ccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCC
Confidence 777777666543221 35778888888887 566664 35667788888877764
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=2.2e-23 Score=181.03 Aligned_cols=261 Identities=18% Similarity=0.168 Sum_probs=183.5
Q ss_pred cccCCCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCcc-ccCccCC
Q 038877 3 VEEWEGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSG-ISNLVSL 79 (298)
Q Consensus 3 ~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~-~~~l~~L 79 (298)
++++++|++|++++|.+..++ .+..+++|++|++++|.+..+++..++.+++|++|++++| .+..+|.. ++.+++|
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L 143 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKL 143 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCC
Confidence 467888999999999888754 4578899999999999888777666888999999999999 78877764 5788999
Q ss_pred CeeeccCCcccccc-hhhcCCCcccEEeccCCccCCCCchhhhcC----------------CCcccEEEeeccCCccccc
Q 038877 80 HHLDLSWTRIRGLP-QELKALEKLRYLSLEGTRHLSIIPHQLISG----------------FSKLEVLRLLWCGLWSRKE 142 (298)
Q Consensus 80 ~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~----------------l~~L~~L~l~~~~~~~~~~ 142 (298)
++|++++|.+..++ ..+..+++|++|++++|.. ..++...+.+ .++|+.|++++|.+.....
T Consensus 144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~ 222 (390)
T 3o6n_A 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG 222 (390)
T ss_dssp CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC-SBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC
T ss_pred cEEECCCCccCccChhhccCCCCCCEEECCCCcC-CccccccccccceeecccccccccCCCCcceEEECCCCeeeeccc
Confidence 99999998888664 4588888999999988843 3333211211 1223344444433321100
Q ss_pred c-----ccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCccccccccccccc
Q 038877 143 Q-----EEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQ 217 (298)
Q Consensus 143 ~-----~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 217 (298)
. ....+....... ...+..+++|+.|+++++...... +......++|+.|++++|..... ......+++|+
T Consensus 223 ~~~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~ 298 (390)
T 3o6n_A 223 PVNVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIM--YHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLK 298 (390)
T ss_dssp CCCSSCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEE--SGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCC
T ss_pred cccccccEEECCCCCCcc-cHHHcCCCCccEEECCCCcCCCcC--hhHccccccCCEEECCCCcCccc-CcccCCCCCCC
Confidence 0 111111111111 246778899999999998765431 22334457899999999975443 33456789999
Q ss_pred ceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchhhhhhcCCCcEEEeecCc
Q 038877 218 ELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCY 280 (298)
Q Consensus 218 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~L~~L~l~~c~ 280 (298)
.|++++|.+..++.. + ..+++|+.|++++| .++.++ +..+++|++|++.+++
T Consensus 299 ~L~L~~n~l~~~~~~-~--------~~l~~L~~L~L~~N-~i~~~~-~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 299 VLDLSHNHLLHVERN-Q--------PQFDRLENLYLDHN-SIVTLK-LSTHHTLKNLTLSHND 350 (390)
T ss_dssp EEECCSSCCCCCGGG-H--------HHHTTCSEEECCSS-CCCCCC-CCTTCCCSEEECCSSC
T ss_pred EEECCCCcceecCcc-c--------cccCcCCEEECCCC-ccceeC-chhhccCCEEEcCCCC
Confidence 999999988764332 2 36899999999999 678775 6789999999999874
No 27
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=2.7e-23 Score=188.25 Aligned_cols=132 Identities=25% Similarity=0.306 Sum_probs=94.3
Q ss_pred CCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCeee
Q 038877 7 EGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHLD 83 (298)
Q Consensus 7 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~ 83 (298)
++|++|++++|.+.+++ .+..+++|++|++++|.+..+++..+..+++|++|++++| .+..+++ .++.+++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEE
Confidence 56788888888777642 3577788888888888777666544777788888888888 6666554 477778888888
Q ss_pred ccCCcccc--cchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcc
Q 038877 84 LSWTRIRG--LPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWS 139 (298)
Q Consensus 84 l~~~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 139 (298)
+++|.+.. .+..++.+++|++|++++|...+.++...++++++|++|++++|.+.+
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 88877763 455677777888888877754566654447777777777777777643
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=1.1e-23 Score=198.11 Aligned_cols=133 Identities=15% Similarity=0.180 Sum_probs=110.5
Q ss_pred CcccCCCccEEEeecCCCcC------------------CCCC-C--CCCcccEEEecCCccc-ccCchHHhcCCCccEEE
Q 038877 2 KVEEWEGAKRISLMKTGIQS------------------PSEI-P--TCPRLVTFLLDGNWIE-EITDGFFRSMSSLRVLS 59 (298)
Q Consensus 2 ~~~~~~~L~~L~l~~~~~~~------------------~~~~-~--~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~ 59 (298)
.++++++|+.|++++|.+++ +|.. . .+++|++|++++|.+. .+|.. +..+++|++|+
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~ 521 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLN 521 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEE
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEE
Confidence 47889999999999999988 7744 5 8999999999999765 67765 88999999999
Q ss_pred ccCCcCCc--cCCccccCcc-------CCCeeeccCCcccccch--hhcCCCcccEEeccCCccCCCCchhhhcCCCccc
Q 038877 60 LRRNLALS--KLPSGISNLV-------SLHHLDLSWTRIRGLPQ--ELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLE 128 (298)
Q Consensus 60 l~~~~~~~--~~p~~~~~l~-------~L~~L~l~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 128 (298)
+++|..++ .+|..++.+. +|++|++++|.+..+|. .++.+++|+.|++++|.. ..+| . ++++++|+
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l-~~lp-~-~~~L~~L~ 598 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV-RHLE-A-FGTNVKLT 598 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCC-CBCC-C-CCTTSEES
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCc-ccch-h-hcCCCcce
Confidence 99993155 4777666655 99999999998888888 899999999999999854 4777 3 88899999
Q ss_pred EEEeeccCCc
Q 038877 129 VLRLLWCGLW 138 (298)
Q Consensus 129 ~L~l~~~~~~ 138 (298)
.|++++|.+.
T Consensus 599 ~L~Ls~N~l~ 608 (876)
T 4ecn_A 599 DLKLDYNQIE 608 (876)
T ss_dssp EEECCSSCCS
T ss_pred EEECcCCccc
Confidence 9999988874
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=2.4e-23 Score=184.01 Aligned_cols=247 Identities=13% Similarity=0.128 Sum_probs=195.5
Q ss_pred CCcccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCC
Q 038877 1 PKVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLH 80 (298)
Q Consensus 1 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 80 (298)
|.++++++|++|++++|.++++| +..+++|++|++++|.+..++ ++.+++|++|++++| .+..+| ++.+++|+
T Consensus 58 ~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N-~l~~l~--~~~l~~L~ 130 (457)
T 3bz5_A 58 TGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTN-KLTKLD--VSQNPLLT 130 (457)
T ss_dssp TTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSS-CCSCCC--CTTCTTCC
T ss_pred hhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCC-cCCeec--CCCCCcCC
Confidence 46788999999999999999986 888999999999999998764 778999999999999 888775 78999999
Q ss_pred eeeccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhh
Q 038877 81 HLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKEL 160 (298)
Q Consensus 81 ~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 160 (298)
+|++++|.++.++ ++.+++|++|++++|...+.++ ++.+++|+.|++++|.+.. ++ +
T Consensus 131 ~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~----------------l~--l 187 (457)
T 3bz5_A 131 YLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE----------------LD--V 187 (457)
T ss_dssp EEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC----------------CC--C
T ss_pred EEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce----------------ec--c
Confidence 9999999999875 7889999999999997666662 7899999999999999843 22 7
Q ss_pred cCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhcc
Q 038877 161 LGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKL 240 (298)
Q Consensus 161 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 240 (298)
..+++|+.++++.+.....+ ...++.|+.|++++|...... +..+++|+.|++++|.+..+++..+..-..+
T Consensus 188 ~~l~~L~~L~l~~N~l~~~~-----l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L 259 (457)
T 3bz5_A 188 SQNKLLNRLNCDTNNITKLD-----LNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTLSKLTTL 259 (457)
T ss_dssp TTCTTCCEEECCSSCCSCCC-----CTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCCCTTCTTCCEE
T ss_pred ccCCCCCEEECcCCcCCeec-----cccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcCHHHCCCCCEE
Confidence 78899999999998776542 344588999999999876632 7889999999999999877543222000000
Q ss_pred ccccCCcccEEeccCCCCCCchhhhhhcCCCcEEEeecCcccccccc
Q 038877 241 FRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCYDVEEIIS 287 (298)
Q Consensus 241 ~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~L~~L~l~~c~~l~~~~~ 287 (298)
.-...+|+.|++++|..+..++ ...+++|++|++++|..+..++.
T Consensus 260 -~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 260 -HCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp -ECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEEC
T ss_pred -eccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceecc
Confidence 0011244555666665555554 36789999999999998887774
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=3.6e-23 Score=189.17 Aligned_cols=261 Identities=18% Similarity=0.158 Sum_probs=185.4
Q ss_pred cccCCCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCcc-ccCccCC
Q 038877 3 VEEWEGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSG-ISNLVSL 79 (298)
Q Consensus 3 ~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~-~~~l~~L 79 (298)
+.++++|+.|++++|.+.+++ .+..+++|++|++++|.+..+++..++.+++|++|++++| .+..+|.. ++.+++|
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L 149 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKL 149 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCC
Confidence 456888999999999888854 4588899999999999888777766788999999999999 78777664 5888999
Q ss_pred CeeeccCCcccccc-hhhcCCCcccEEeccCCccCCCCchhhhc----------------CCCcccEEEeeccCCccccc
Q 038877 80 HHLDLSWTRIRGLP-QELKALEKLRYLSLEGTRHLSIIPHQLIS----------------GFSKLEVLRLLWCGLWSRKE 142 (298)
Q Consensus 80 ~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~----------------~l~~L~~L~l~~~~~~~~~~ 142 (298)
++|++++|.+..++ ..++.+++|++|++++|.. ..++.+.+. ..++|+.|++++|.+.....
T Consensus 150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~ 228 (597)
T 3oja_B 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG 228 (597)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC-SBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEEC
T ss_pred CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC-CCcChhhhhhhhhhhcccCccccccCCchhheeeccCCccccccc
Confidence 99999999888655 4688889999999988843 333322122 12334444444444322111
Q ss_pred c-----ccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCccccccccccccc
Q 038877 143 Q-----EEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQ 217 (298)
Q Consensus 143 ~-----~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 217 (298)
. ....+...... .+..+..+++|+.|++++|...... +.....++.|+.|++++|..... +.....+|+|+
T Consensus 229 ~~~~~L~~L~L~~n~l~-~~~~l~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~ 304 (597)
T 3oja_B 229 PVNVELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEKIM--YHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLK 304 (597)
T ss_dssp SCCSCCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCEEE--SGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCC
T ss_pred ccCCCCCEEECCCCCCC-CChhhccCCCCCEEECCCCccCCCC--HHHhcCccCCCEEECCCCCCCCC-CcccccCCCCc
Confidence 1 01111111111 1356778999999999998765431 22334457899999999975443 33456789999
Q ss_pred ceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchhhhhhcCCCcEEEeecCc
Q 038877 218 ELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCY 280 (298)
Q Consensus 218 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~L~~L~l~~c~ 280 (298)
.|++++|.+..++.. + ..+++|+.|++++| .++.++ +..+++|++|++.+++
T Consensus 305 ~L~Ls~N~l~~i~~~-~--------~~l~~L~~L~L~~N-~l~~~~-~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 305 VLDLSHNHLLHVERN-Q--------PQFDRLENLYLDHN-SIVTLK-LSTHHTLKNLTLSHND 356 (597)
T ss_dssp EEECCSSCCCCCGGG-H--------HHHTTCSEEECCSS-CCCCCC-CCTTCCCSEEECCSSC
T ss_pred EEECCCCCCCccCcc-c--------ccCCCCCEEECCCC-CCCCcC-hhhcCCCCEEEeeCCC
Confidence 999999998864432 2 36899999999999 677775 6788999999999875
No 31
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=3.4e-24 Score=180.61 Aligned_cols=229 Identities=14% Similarity=0.103 Sum_probs=191.4
Q ss_pred CcccCCCccEEEeec-CCCcC-CC-CCCCCCcccEEEecCCccc-ccCchHHhcCCCccEEEccCCcCCc-cCCccccCc
Q 038877 2 KVEEWEGAKRISLMK-TGIQS-PS-EIPTCPRLVTFLLDGNWIE-EITDGFFRSMSSLRVLSLRRNLALS-KLPSGISNL 76 (298)
Q Consensus 2 ~~~~~~~L~~L~l~~-~~~~~-~~-~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~-~~p~~~~~l 76 (298)
.++++++|++|++++ |.+.+ +| .+..+++|++|++++|.+. .+|.. +..+++|++|++++| .+. .+|..+..+
T Consensus 71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l 148 (313)
T 1ogq_A 71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYN-ALSGTLPPSISSL 148 (313)
T ss_dssp GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG-GGGCTTCCEEECCSS-EEESCCCGGGGGC
T ss_pred hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH-HhCCCCCCEEeCCCC-ccCCcCChHHhcC
Confidence 478899999999995 88875 66 4588999999999999998 66665 899999999999999 666 778899999
Q ss_pred cCCCeeeccCCccc-ccchhhcCCC-cccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCch
Q 038877 77 VSLHHLDLSWTRIR-GLPQELKALE-KLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAE 154 (298)
Q Consensus 77 ~~L~~L~l~~~~~~-~l~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 154 (298)
++|++|++++|.+. .+|..++.++ +|++|++++|...+.+|.. ++.++ |+.|++++|.+ ..
T Consensus 149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~N~l---------------~~ 211 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSRNML---------------EG 211 (313)
T ss_dssp TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECCSSEE---------------EE
T ss_pred CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECcCCcc---------------cC
Confidence 99999999999998 8899999998 9999999999766677775 78887 99999999998 34
Q ss_pred hHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcce-eeecc
Q 038877 155 PLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEE-MKIDS 233 (298)
Q Consensus 155 ~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~ 233 (298)
..+..+..+++|+.|+++++...... ......++|++|++++|......+..+..+++|+.|++++|.+.. ++. .
T Consensus 212 ~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~ 287 (313)
T 1ogq_A 212 DASVLFGSDKNTQKIHLAKNSLAFDL---GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-G 287 (313)
T ss_dssp CCGGGCCTTSCCSEEECCSSEECCBG---GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-S
T ss_pred cCCHHHhcCCCCCEEECCCCceeeec---CcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC-C
Confidence 56778889999999999988764221 123445889999999998766667779999999999999999876 322 1
Q ss_pred hhhhhccccccCCcccEEeccCCCCCCch
Q 038877 234 AEEVKKLFRSGFRSLNTVSVDYCQKAKDL 262 (298)
Q Consensus 234 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~l 262 (298)
..+++|+.+++.+++.+...
T Consensus 288 ---------~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 288 ---------GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp ---------TTGGGSCGGGTCSSSEEEST
T ss_pred ---------ccccccChHHhcCCCCccCC
Confidence 46899999999999766654
No 32
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=3.9e-23 Score=190.07 Aligned_cols=249 Identities=12% Similarity=0.096 Sum_probs=119.4
Q ss_pred CCccEEEeecCCCcCCCC---CCCCCcccEEEecCCccc-ccCchHHhcCCCccEEEccCCcCCccCCccccCccC-CCe
Q 038877 7 EGAKRISLMKTGIQSPSE---IPTCPRLVTFLLDGNWIE-EITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVS-LHH 81 (298)
Q Consensus 7 ~~L~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~-L~~ 81 (298)
++|++|++++|.++.+|. +..+++|++|++++|.+. .+| . +..+++|++|++++| .+..+|..+..+++ |++
T Consensus 305 ~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~ 381 (636)
T 4eco_A 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLNLAYN-QITEIPANFCGFTEQVEN 381 (636)
T ss_dssp GTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEECCSS-EEEECCTTSEEECTTCCE
T ss_pred CCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEECCCC-ccccccHhhhhhcccCcE
Confidence 444444444444444443 244444444444444444 333 2 444444444444444 34344444444444 444
Q ss_pred eeccCCcccccchhhcCCC--cccEEeccCCccCCCCchhhhc-------CCCcccEEEeeccCCccccccccccccccC
Q 038877 82 LDLSWTRIRGLPQELKALE--KLRYLSLEGTRHLSIIPHQLIS-------GFSKLEVLRLLWCGLWSRKEQEEGSVLYDD 152 (298)
Q Consensus 82 L~l~~~~~~~l~~~~~~l~--~L~~L~l~~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 152 (298)
|++++|.++.+|..+..++ +|+.|++++|...+..|.. +. .+++|+.|++++|.+.
T Consensus 382 L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N~l~-------------- 446 (636)
T 4eco_A 382 LSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN-FDPLDPTPFKGINVSSINLSNNQIS-------------- 446 (636)
T ss_dssp EECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCS-SCTTCSSCCCCCCEEEEECCSSCCC--------------
T ss_pred EEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhh-hcccccccccCCCCCEEECcCCccC--------------
Confidence 4444444444444333322 4444444444333333332 33 3444555555544442
Q ss_pred chhHHH-hhcCCCCccEEEEEecCccchhhhccc-----cccccceeEEEEeccCCCCccccccc--ccccccceecccC
Q 038877 153 AEPLMK-ELLGLKHLNVLSWSLHSSLAVQKFLKY-----PKLLSITQSVGVYFCQSPPLNVLHLA--YMENLQELVILNS 224 (298)
Q Consensus 153 ~~~~~~-~l~~l~~L~~l~l~~~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~~ 224 (298)
.++. .+..+++|+.|++++|....++..... ...+++|+.|++++|.... .+..+. .+++|+.|++++|
T Consensus 447 --~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N 523 (636)
T 4eco_A 447 --KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYN 523 (636)
T ss_dssp --SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB-CCGGGSTTTCTTCCEEECCSS
T ss_pred --cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc-cChhhhhccCCCcCEEECCCC
Confidence 2332 234567777777777665432211000 0111267777777776552 223343 6777777777777
Q ss_pred CcceeeecchhhhhccccccCCcccEEeccC------CCCCCchh-hhhhcCCCcEEEeecCccccccc
Q 038877 225 DLEEMKIDSAEEVKKLFRSGFRSLNTVSVDY------CQKAKDLT-WLVFAQNLKELRIDSCYDVEEII 286 (298)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------c~~l~~l~-~l~~~~~L~~L~l~~c~~l~~~~ 286 (298)
.+..++. .+ ..+++|+.|++++ |.-...++ .+..+++|++|++++|.. ..++
T Consensus 524 ~l~~ip~-~~--------~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip 582 (636)
T 4eco_A 524 SFSKFPT-QP--------LNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVN 582 (636)
T ss_dssp CCSSCCC-GG--------GGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred CCCCcCh-hh--------hcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccC
Confidence 7665322 22 3466666666643 22222333 345566666666666643 4444
No 33
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=2.8e-23 Score=190.28 Aligned_cols=246 Identities=16% Similarity=0.097 Sum_probs=165.1
Q ss_pred CccEEEe-ecCCCcC-CCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeecc
Q 038877 8 GAKRISL-MKTGIQS-PSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLS 85 (298)
Q Consensus 8 ~L~~L~l-~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 85 (298)
.++.+.+ ..+.+.+ +|.+..+++|+.|+++++.+..++ . +..+++|++|++++| .+..+|. + .+++|++|+++
T Consensus 262 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~-l~~~~~L~~L~l~~n-~l~~lp~-~-~l~~L~~L~l~ 336 (606)
T 3vq2_A 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-D-VPKHFKWQSLSIIRC-QLKQFPT-L-DLPFLKSLTLT 336 (606)
T ss_dssp EEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-C-CCTTCCCSEEEEESC-CCSSCCC-C-CCSSCCEEEEE
T ss_pred cHhheeccccccccccccccccCCCCCEEEecCccchhhh-h-ccccccCCEEEcccc-cCccccc-C-CCCccceeecc
Confidence 4556666 4455555 556788999999999999998887 3 888999999999999 6677773 3 55556665555
Q ss_pred CC----------------------ccccc---chhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccc
Q 038877 86 WT----------------------RIRGL---PQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSR 140 (298)
Q Consensus 86 ~~----------------------~~~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 140 (298)
+| .+..+ +..+..+++|++|++++|. +..+|.. +.++++|+.|++++|.+.
T Consensus 337 ~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~-~~~l~~L~~L~l~~n~l~-- 412 (606)
T 3vq2_A 337 MNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSAN-FMGLEELQHLDFQHSTLK-- 412 (606)
T ss_dssp SCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCC-CTTCTTCCEEECTTSEEE--
T ss_pred CCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhh-ccCCCCCCeeECCCCccC--
Confidence 55 33322 3444445555555555542 2233322 455555555555555442
Q ss_pred cccccccccccCchhHH-HhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCC-cccccccccccccc
Q 038877 141 KEQEEGSVLYDDAEPLM-KELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPP-LNVLHLAYMENLQE 218 (298)
Q Consensus 141 ~~~~~~~~~~~~~~~~~-~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~ 218 (298)
...+ ..+..+++|+.++++++..... .+.....+++|++|++++|.... ..+..+..+++|+.
T Consensus 413 -------------~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 477 (606)
T 3vq2_A 413 -------------RVTEFSAFLSLEKLLYLDISYTNTKID--FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF 477 (606)
T ss_dssp -------------STTTTTTTTTCTTCCEEECTTSCCEEC--CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred -------------CccChhhhhccccCCEEECcCCCCCcc--chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCE
Confidence 1222 4566778888888877765431 12233445778888888886544 34556788889999
Q ss_pred eecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCch-h-hhhhcCCCcEEEeecCcccccccc
Q 038877 219 LVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDL-T-WLVFAQNLKELRIDSCYDVEEIIS 287 (298)
Q Consensus 219 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~-~l~~~~~L~~L~l~~c~~l~~~~~ 287 (298)
|++++|.+.......+ ..+++|+.|++++| .++.+ + .+..+++|++|++++|. ++.++.
T Consensus 478 L~Ls~n~l~~~~~~~~--------~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~ 538 (606)
T 3vq2_A 478 LDLSKCQLEQISWGVF--------DTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNR-IETSKG 538 (606)
T ss_dssp EECTTSCCCEECTTTT--------TTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTSC-CCCEES
T ss_pred EECCCCcCCccChhhh--------cccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCCc-CcccCH
Confidence 9999998877555555 57899999999999 67766 3 46778999999999984 666664
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=1.1e-22 Score=184.77 Aligned_cols=102 Identities=28% Similarity=0.403 Sum_probs=73.3
Q ss_pred CCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeec
Q 038877 7 EGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDL 84 (298)
Q Consensus 7 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 84 (298)
++|++|++++|.+..++ .+..+++|++|++++|.+..+++..+..+++|++|++++| .+..+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc--ccccCCEEEC
Confidence 56777777777777755 4577777777777777777665544777777777777777 67677665 6777777777
Q ss_pred cCCcccccc--hhhcCCCcccEEeccCCc
Q 038877 85 SWTRIRGLP--QELKALEKLRYLSLEGTR 111 (298)
Q Consensus 85 ~~~~~~~l~--~~~~~l~~L~~L~l~~~~ 111 (298)
++|.+..++ ..++.+++|++|++++|.
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred CCCCccccCchHhhcccCcccEEecCCCc
Confidence 777777543 567777777777777764
No 35
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=4.7e-23 Score=171.37 Aligned_cols=221 Identities=19% Similarity=0.218 Sum_probs=174.7
Q ss_pred cEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCeeeccCCc
Q 038877 10 KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHLDLSWTR 88 (298)
Q Consensus 10 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~ 88 (298)
+.++.+++.++.+|.. -.++|++|++++|.+..++...+..+++|++|++++| .+..+ |..++.+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTT-CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcC-CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCC
Confidence 5788888888888743 3579999999999999887666899999999999999 77766 6788999999999999996
Q ss_pred -cccc-chhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCc
Q 038877 89 -IRGL-PQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHL 166 (298)
Q Consensus 89 -~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 166 (298)
+..+ +..+..+++|++|++++|.. ..++...+.++++|+.|++++|.+.. .....+..+++|
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~~~~~~~l~~L 155 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQA---------------LPDDTFRDLGNL 155 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECCSSCCCC---------------CCTTTTTTCTTC
T ss_pred CccccCHHHhcCCcCCCEEECCCCcC-CEECHhHhhCCcCCCEEECCCCcccc---------------cCHhHhccCCCc
Confidence 8876 56788999999999999954 44544458899999999999998843 233457788999
Q ss_pred cEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCC
Q 038877 167 NVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFR 246 (298)
Q Consensus 167 ~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (298)
+.|+++++....+.. ......+.|+.|++++|......+..+..+++|+.|++++|.+..++...+ ..++
T Consensus 156 ~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--------~~l~ 225 (285)
T 1ozn_A 156 THLFLHGNRISSVPE--RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL--------APLR 225 (285)
T ss_dssp CEEECCSSCCCEECT--TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHH--------TTCT
T ss_pred cEEECCCCcccccCH--HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHc--------ccCc
Confidence 999999886654332 123345778899999887766666778888899999999998877555545 5788
Q ss_pred cccEEeccCCCC
Q 038877 247 SLNTVSVDYCQK 258 (298)
Q Consensus 247 ~L~~L~l~~c~~ 258 (298)
+|+.|++++++-
T Consensus 226 ~L~~L~l~~N~~ 237 (285)
T 1ozn_A 226 ALQYLRLNDNPW 237 (285)
T ss_dssp TCCEEECCSSCE
T ss_pred ccCEEeccCCCc
Confidence 999999998843
No 36
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=4.3e-23 Score=181.95 Aligned_cols=223 Identities=22% Similarity=0.273 Sum_probs=190.6
Q ss_pred CCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCeee
Q 038877 7 EGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHLD 83 (298)
Q Consensus 7 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~ 83 (298)
++++.|++++|.+..++ .+..+++|++|++++|.+..++...+..+++|++|++++| .+..+|. .+..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceee
Confidence 57999999999998854 4589999999999999999888766999999999999999 8888765 689999999999
Q ss_pred ccCCcccccch-hhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcC
Q 038877 84 LSWTRIRGLPQ-ELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLG 162 (298)
Q Consensus 84 l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (298)
+++|.+..++. .+..+++|++|++++++....++...+.++++|+.|++++|.+.. + ..+..
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~----------------~-~~~~~ 205 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE----------------I-PNLTP 205 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS----------------C-CCCTT
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc----------------c-cccCC
Confidence 99999997764 688999999999999877888887778999999999999998843 2 24778
Q ss_pred CCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhcccc
Q 038877 163 LKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFR 242 (298)
Q Consensus 163 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 242 (298)
+++|+.|++++|....+. +......++|+.|++.+|.........+..+++|+.|++++|.+..++...+
T Consensus 206 l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-------- 275 (440)
T 3zyj_A 206 LIKLDELDLSGNHLSAIR--PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF-------- 275 (440)
T ss_dssp CSSCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTT--------
T ss_pred CcccCEEECCCCccCccC--hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHh--------
Confidence 899999999998765432 2234456889999999998777777789999999999999999988666655
Q ss_pred ccCCcccEEeccCCC
Q 038877 243 SGFRSLNTVSVDYCQ 257 (298)
Q Consensus 243 ~~~~~L~~L~l~~c~ 257 (298)
..+++|+.|++++|+
T Consensus 276 ~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 276 TPLHHLERIHLHHNP 290 (440)
T ss_dssp SSCTTCCEEECCSSC
T ss_pred ccccCCCEEEcCCCC
Confidence 578999999999874
No 37
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=5.1e-23 Score=185.24 Aligned_cols=102 Identities=19% Similarity=0.142 Sum_probs=70.3
Q ss_pred cccCCCccEEEeecCCCcCC-C-CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCcc--CCccccCccC
Q 038877 3 VEEWEGAKRISLMKTGIQSP-S-EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSK--LPSGISNLVS 78 (298)
Q Consensus 3 ~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~p~~~~~l~~ 78 (298)
++++++|++|++++|.+.++ | .+..+++|++|++++|.+..+|.. .+++|++|++++| .+.. +|..++.+++
T Consensus 41 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~ 116 (520)
T 2z7x_B 41 ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDLSFN-AFDALPICKEFGNMSQ 116 (520)
T ss_dssp HTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC---CCCCCSEEECCSS-CCSSCCCCGGGGGCTT
T ss_pred ccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc---ccCCccEEeccCC-ccccccchhhhccCCc
Confidence 56778888888888888774 3 457788888888888877776654 6788888888888 6653 4677778888
Q ss_pred CCeeeccCCcccccchhhcCCCcc--cEEeccCC
Q 038877 79 LHHLDLSWTRIRGLPQELKALEKL--RYLSLEGT 110 (298)
Q Consensus 79 L~~L~l~~~~~~~l~~~~~~l~~L--~~L~l~~~ 110 (298)
|++|++++|.+.. ..+..+++| +.|++++|
T Consensus 117 L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 117 LKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLG 148 (520)
T ss_dssp CCEEEEEESSCCG--GGGGGGTTSCEEEEEEEEC
T ss_pred ceEEEecCcccch--hhccccccceeeEEEeecc
Confidence 8888887776653 123333333 44444444
No 38
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=1.4e-22 Score=190.56 Aligned_cols=270 Identities=14% Similarity=0.174 Sum_probs=148.4
Q ss_pred cccCCCccEEEeecCC-CcC--CC--------CCCCCCcccEEEecCCcccccCc-hHHhcCCCccEEEccCCcCCccCC
Q 038877 3 VEEWEGAKRISLMKTG-IQS--PS--------EIPTCPRLVTFLLDGNWIEEITD-GFFRSMSSLRVLSLRRNLALSKLP 70 (298)
Q Consensus 3 ~~~~~~L~~L~l~~~~-~~~--~~--------~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~p 70 (298)
++++++|+.|++++|. +++ +| .+..+++|++|++++|.+..+|. ..+..+++|++|++++| .+..+|
T Consensus 511 l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp 589 (876)
T 4ecn_A 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE 589 (876)
T ss_dssp GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCC
T ss_pred HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccch
Confidence 5566666666666665 443 33 22344566666666666665555 12666666666666666 555555
Q ss_pred ccccCccCCCeeeccCCcccccchhhcCCCc-ccEEeccCCccCCCCchhhhcCCC--cccEEEeeccCCcccccc----
Q 038877 71 SGISNLVSLHHLDLSWTRIRGLPQELKALEK-LRYLSLEGTRHLSIIPHQLISGFS--KLEVLRLLWCGLWSRKEQ---- 143 (298)
Q Consensus 71 ~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~---- 143 (298)
.++.+++|++|++++|.+..+|..+..+++ |+.|++++|. +..+|.. +..++ +|+.|++++|.+.+..+.
T Consensus 590 -~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~-~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~ 666 (876)
T 4ecn_A 590 -AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNI-FNAKSVYVMGSVDFSYNKIGSEGRNISCS 666 (876)
T ss_dssp -CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC-CCSCCSC-CCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred -hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCC-CCcCchh-hhccccCCCCEEECcCCcCCCccccchhh
Confidence 566666666666666666666666666666 6666666663 3355542 34333 266666665555331110
Q ss_pred ---------ccccccccCchhHHHhh-cCCCCccEEEEEecCccchhhhccc-----cccccceeEEEEeccCCCCcccc
Q 038877 144 ---------EEGSVLYDDAEPLMKEL-LGLKHLNVLSWSLHSSLAVQKFLKY-----PKLLSITQSVGVYFCQSPPLNVL 208 (298)
Q Consensus 144 ---------~~~~~~~~~~~~~~~~l-~~l~~L~~l~l~~~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~ 208 (298)
....+..+....++..+ ..+++|+.|++++|....++..... ...+++|+.|++++|.... .+.
T Consensus 667 l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp~ 745 (876)
T 4ecn_A 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSD 745 (876)
T ss_dssp TTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-CCG
T ss_pred hccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc-chH
Confidence 01111111112233333 3677788888877765533321111 1122377888888776553 233
Q ss_pred ccc--ccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCC------CCCchh-hhhhcCCCcEEEeecC
Q 038877 209 HLA--YMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQ------KAKDLT-WLVFAQNLKELRIDSC 279 (298)
Q Consensus 209 ~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~------~l~~l~-~l~~~~~L~~L~l~~c 279 (298)
.+. .+++|+.|++++|.+..++. .+ ..+++|+.|++++|. -...+| .+..+++|++|++++|
T Consensus 746 ~l~~~~l~~L~~L~Ls~N~L~~lp~-~l--------~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N 816 (876)
T 4ecn_A 746 DFRATTLPYLSNMDVSYNCFSSFPT-QP--------LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN 816 (876)
T ss_dssp GGSTTTCTTCCEEECCSSCCSSCCC-GG--------GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred HhhhccCCCcCEEEeCCCCCCccch-hh--------hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC
Confidence 344 67788888888877766322 22 356777777776532 222333 3556777777777776
Q ss_pred cccccccc
Q 038877 280 YDVEEIIS 287 (298)
Q Consensus 280 ~~l~~~~~ 287 (298)
.. ..++.
T Consensus 817 ~L-~~Ip~ 823 (876)
T 4ecn_A 817 DI-RKVDE 823 (876)
T ss_dssp CC-CBCCS
T ss_pred CC-CccCH
Confidence 44 55543
No 39
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=4.8e-22 Score=178.93 Aligned_cols=122 Identities=22% Similarity=0.215 Sum_probs=55.6
Q ss_pred EEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCeeeccCCcc
Q 038877 11 RISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHLDLSWTRI 89 (298)
Q Consensus 11 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~ 89 (298)
+++++++.++.+|.... ++|++|++++|.+..+++..+..+++|++|++++| .+..+ |..++.+++|++|++++|.+
T Consensus 4 ~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp EEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred eEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCce
Confidence 44445554444443211 44555555555444444333444555555555555 34333 33444455555555555544
Q ss_pred cccchhhcCCCcccEEeccCCccCC-CCchhhhcCCCcccEEEeeccCC
Q 038877 90 RGLPQELKALEKLRYLSLEGTRHLS-IIPHQLISGFSKLEVLRLLWCGL 137 (298)
Q Consensus 90 ~~l~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~ 137 (298)
+.+|.. .+++|++|++++|...+ .+|.. ++++++|++|++++|.+
T Consensus 82 ~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 82 VKISCH--PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp CEEECC--CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSC
T ss_pred eecCcc--ccCCccEEeccCCccccccchhh-hccCCcceEEEecCccc
Confidence 444433 44455555555543222 12232 44455555555554444
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=2.4e-22 Score=170.57 Aligned_cols=243 Identities=19% Similarity=0.173 Sum_probs=182.5
Q ss_pred CCCccEEEeecCCCcCCCC--CCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeee
Q 038877 6 WEGAKRISLMKTGIQSPSE--IPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLD 83 (298)
Q Consensus 6 ~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 83 (298)
.+.++.|++++|.+++++. +..+++|++|++++|.+..+.+..+..+++|++|++++| .+..+|..+. ++|++|+
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQELR 127 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--TTCCEEE
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhc--ccccEEE
Confidence 3679999999999998663 588999999999999998775544899999999999999 8888887554 7899999
Q ss_pred ccCCcccccc-hhhcCCCcccEEeccCCccCC--CCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhh
Q 038877 84 LSWTRIRGLP-QELKALEKLRYLSLEGTRHLS--IIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKEL 160 (298)
Q Consensus 84 l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 160 (298)
+++|.+..++ ..+..+++|+.|++++|.... ..+. .+.++++|+.|++++|.+.. ++..+
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~~L~~L~l~~n~l~~----------------l~~~~ 190 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG-AFQGMKKLSYIRIADTNITT----------------IPQGL 190 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTT-GGGGCTTCCEEECCSSCCCS----------------CCSSC
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChh-hccCCCCcCEEECCCCcccc----------------CCccc
Confidence 9999988766 458899999999999985432 3333 48899999999999998843 22222
Q ss_pred cCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhcc
Q 038877 161 LGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKL 240 (298)
Q Consensus 161 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 240 (298)
.++|+.++++++...... +......++|+.|++++|.........+..+++|+.|++++|.+..++.. +
T Consensus 191 --~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-l------ 259 (330)
T 1xku_A 191 --PPSLTELHLDGNKITKVD--AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG-L------ 259 (330)
T ss_dssp --CTTCSEEECTTSCCCEEC--TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTT-T------
T ss_pred --cccCCEEECCCCcCCccC--HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChh-h------
Confidence 267888888877654431 12233456788888888876665555677888888888888887754322 2
Q ss_pred ccccCCcccEEeccCCCCCCchhhhh--------hcCCCcEEEeecCccc
Q 038877 241 FRSGFRSLNTVSVDYCQKAKDLTWLV--------FAQNLKELRIDSCYDV 282 (298)
Q Consensus 241 ~~~~~~~L~~L~l~~c~~l~~l~~l~--------~~~~L~~L~l~~c~~l 282 (298)
..+++|+.|++++| .++.++.-. ..+.|+.+++.+.+..
T Consensus 260 --~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 260 --ADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp --TTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred --ccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCccc
Confidence 46788888888888 677664211 2467888888887643
No 41
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=1.8e-23 Score=196.36 Aligned_cols=268 Identities=19% Similarity=0.167 Sum_probs=164.6
Q ss_pred cCCCccEEEeecCCCc-CCCCC-CC-CCcccEEEecCCccc-ccCchHHhcCCCccEEEccCCcCCc-cCCcc-ccCccC
Q 038877 5 EWEGAKRISLMKTGIQ-SPSEI-PT-CPRLVTFLLDGNWIE-EITDGFFRSMSSLRVLSLRRNLALS-KLPSG-ISNLVS 78 (298)
Q Consensus 5 ~~~~L~~L~l~~~~~~-~~~~~-~~-~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~-~~p~~-~~~l~~ 78 (298)
.+++|++|++++|.+. .+|.. .. +++|++|++++|.+. .+|.. ++.+++|++|++++| .+. .+|.. ++.+++
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n-~l~~~ip~~~l~~l~~ 344 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSN-NFSGELPMDTLLKMRG 344 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSS-EEEEECCHHHHTTCTT
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCC-cccCcCCHHHHhcCCC
Confidence 5677888888888777 35533 33 578888888888776 44444 777888888888887 554 66654 777777
Q ss_pred CCeeeccCCccc-ccchhhcCCC-cccEEeccCCccCCCCchhhhcC--CCcccEEEeeccCCcccccc--------ccc
Q 038877 79 LHHLDLSWTRIR-GLPQELKALE-KLRYLSLEGTRHLSIIPHQLISG--FSKLEVLRLLWCGLWSRKEQ--------EEG 146 (298)
Q Consensus 79 L~~L~l~~~~~~-~l~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~--l~~L~~L~l~~~~~~~~~~~--------~~~ 146 (298)
|++|++++|.+. .+|..+..++ +|+.|++++|...+.++.. +.. +++|+.|++++|.+.+.... ...
T Consensus 345 L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 423 (768)
T 3rgz_A 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN-LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423 (768)
T ss_dssp CCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTT-TTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEE
T ss_pred CCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChh-hhhcccCCccEEECCCCccccccCHHHhcCCCCCEE
Confidence 888888777666 6666665555 5666666655443333332 222 44444444444444210000 000
Q ss_pred cccccC-chhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCC
Q 038877 147 SVLYDD-AEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSD 225 (298)
Q Consensus 147 ~~~~~~-~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 225 (298)
++.... ....+..+..+++|+.|++++|.... ..+......+.|++|++++|......+..+..+++|+.|++++|.
T Consensus 424 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~ 501 (768)
T 3rgz_A 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG--EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501 (768)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCCS--CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred ECcCCcccCcccHHHhcCCCCCEEECCCCcccC--cCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCc
Confidence 000000 22345556666777777776665432 122233445677888888877666666667778888888888888
Q ss_pred cceeeecchhhhhccccccCCcccEEeccCCCCCC-chh-hhhhcCCCcEEEeecCccccccc
Q 038877 226 LEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAK-DLT-WLVFAQNLKELRIDSCYDVEEII 286 (298)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~l~-~l~~~~~L~~L~l~~c~~l~~~~ 286 (298)
+.......+ ..+++|+.|++++| .++ .++ .+..+++|++|++.+|.....++
T Consensus 502 l~~~~p~~~--------~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 502 LTGEIPKWI--------GRLENLAILKLSNN-SFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp CCSCCCGGG--------GGCTTCCEEECCSS-CCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred cCCcCChHH--------hcCCCCCEEECCCC-cccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 775333344 46788888888888 444 444 46778888888888886554444
No 42
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=4.3e-23 Score=182.58 Aligned_cols=223 Identities=23% Similarity=0.248 Sum_probs=189.5
Q ss_pred CCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCeee
Q 038877 7 EGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHLD 83 (298)
Q Consensus 7 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~ 83 (298)
++++.|++++|.+..++ .+..+++|++|++++|.+..++...+..+++|++|++++| .+..+|. .+..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEE
Confidence 57999999999998853 4589999999999999999877666999999999999999 8887765 588899999999
Q ss_pred ccCCcccccch-hhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcC
Q 038877 84 LSWTRIRGLPQ-ELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLG 162 (298)
Q Consensus 84 l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (298)
+++|.+..++. .+..+++|+.|++++|+.++.++...+.++++|+.|++++|.+.. + ..+..
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~----------------~-~~~~~ 216 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD----------------M-PNLTP 216 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS----------------C-CCCTT
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc----------------c-ccccc
Confidence 99999997775 688999999999999878888887778999999999999999843 1 34778
Q ss_pred CCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhcccc
Q 038877 163 LKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFR 242 (298)
Q Consensus 163 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 242 (298)
+++|+.|++++|...... +......++|+.|++.+|.........+..+++|+.|++++|.+..++...+
T Consensus 217 l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-------- 286 (452)
T 3zyi_A 217 LVGLEELEMSGNHFPEIR--PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF-------- 286 (452)
T ss_dssp CTTCCEEECTTSCCSEEC--GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSS--------
T ss_pred cccccEEECcCCcCcccC--cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHh--------
Confidence 899999999998765432 1233445789999999998777777788999999999999999887665555
Q ss_pred ccCCcccEEeccCCC
Q 038877 243 SGFRSLNTVSVDYCQ 257 (298)
Q Consensus 243 ~~~~~L~~L~l~~c~ 257 (298)
..+++|+.|++++|+
T Consensus 287 ~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 287 TPLRYLVELHLHHNP 301 (452)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred ccccCCCEEEccCCC
Confidence 578999999999874
No 43
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=3.9e-23 Score=173.59 Aligned_cols=225 Identities=20% Similarity=0.211 Sum_probs=184.1
Q ss_pred CCCccEEEeecCCCcCCCC--CCCCCcccEEEecCCccccc---CchHHhcCCCccEEEccCCcCCccCCccccCccCCC
Q 038877 6 WEGAKRISLMKTGIQSPSE--IPTCPRLVTFLLDGNWIEEI---TDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLH 80 (298)
Q Consensus 6 ~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 80 (298)
.++|++|++++|.+..+|. +..+++|++|++++|.+..+ +.. +..+++|++|++++| .+..+|..+..+++|+
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~ 104 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFN-GVITMSSNFLGLEQLE 104 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSC-SEEEEEEEEETCTTCC
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCC-ccccChhhcCCCCCCC
Confidence 3689999999999999875 47899999999999988744 344 778999999999999 8888888899999999
Q ss_pred eeeccCCcccccch--hhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHH
Q 038877 81 HLDLSWTRIRGLPQ--ELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMK 158 (298)
Q Consensus 81 ~L~l~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (298)
+|++++|.+..++. .+..+++|++|++++|......+. .+.++++|+.|++++|.+.. ...+.
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~--------------~~~~~ 169 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQE--------------NFLPD 169 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT-TTTTCTTCCEEECTTCEEGG--------------GEECS
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh-hcccCcCCCEEECCCCcccc--------------ccchh
Confidence 99999999987764 789999999999999955444444 48999999999999998731 13566
Q ss_pred hhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhh
Q 038877 159 ELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVK 238 (298)
Q Consensus 159 ~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 238 (298)
.+..+++|+.|+++++...... +......++|++|++++|.........+..+++|+.|++++|.+.......+
T Consensus 170 ~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---- 243 (306)
T 2z66_A 170 IFTELRNLTFLDLSQCQLEQLS--PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL---- 243 (306)
T ss_dssp CCTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC----
T ss_pred HHhhCcCCCEEECCCCCcCCcC--HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH----
Confidence 7888999999999988765432 1233445789999999998776666678889999999999999887544444
Q ss_pred ccccccC-CcccEEeccCCC
Q 038877 239 KLFRSGF-RSLNTVSVDYCQ 257 (298)
Q Consensus 239 ~~~~~~~-~~L~~L~l~~c~ 257 (298)
..+ ++|+.|++++|+
T Consensus 244 ----~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 244 ----QHFPSSLAFLNLTQND 259 (306)
T ss_dssp ----CCCCTTCCEEECTTCC
T ss_pred ----HhhhccCCEEEccCCC
Confidence 355 599999999984
No 44
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=3.2e-22 Score=171.37 Aligned_cols=256 Identities=19% Similarity=0.218 Sum_probs=198.4
Q ss_pred cCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCeee
Q 038877 5 EWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHLD 83 (298)
Q Consensus 5 ~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~ 83 (298)
.|+.....+.+++.++.+|.. -.++|++|++++|.+..++...+..+++|++|++++| .+..+ |..++.+++|++|+
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCeEeeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEE
Confidence 456666788888888888753 2369999999999999888756899999999999999 77766 55799999999999
Q ss_pred ccCCcccccchh-hcCCCcccEEeccCCccCCCCch-hhhcCCCcccEEEeeccC-CccccccccccccccCchhHHHhh
Q 038877 84 LSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPH-QLISGFSKLEVLRLLWCG-LWSRKEQEEGSVLYDDAEPLMKEL 160 (298)
Q Consensus 84 l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l 160 (298)
+++|.++.++.. ++.+++|++|++++| .+..++. ..+.++++|+.|++++|. +. ...+..+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~---------------~~~~~~~ 170 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFT---------------KIQRKDF 170 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCC---------------EECTTTT
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCcccc---------------ccCHHHc
Confidence 999999988865 899999999999999 4556665 458999999999999985 42 2234667
Q ss_pred cCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhcc
Q 038877 161 LGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKL 240 (298)
Q Consensus 161 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 240 (298)
..+++|+.++++++...... +......++|+.|++++|.........+..+++|+.|++++|.+...+...+.
T Consensus 171 ~~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~----- 243 (353)
T 2z80_A 171 AGLTFLEELEIDASDLQSYE--PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS----- 243 (353)
T ss_dssp TTCCEEEEEEEEETTCCEEC--TTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------
T ss_pred cCCCCCCEEECCCCCcCccC--HHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc-----
Confidence 88999999999998765431 22344567899999999976555544566789999999999998774443331
Q ss_pred ccccCCcccEEeccCCCCCCc-----hh-hhhhcCCCcEEEeecCcccccccc
Q 038877 241 FRSGFRSLNTVSVDYCQKAKD-----LT-WLVFAQNLKELRIDSCYDVEEIIS 287 (298)
Q Consensus 241 ~~~~~~~L~~L~l~~c~~l~~-----l~-~l~~~~~L~~L~l~~c~~l~~~~~ 287 (298)
.....+.++.+++.++ .+.+ ++ ++..+++|++|+++++ .++.++.
T Consensus 244 ~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~ 294 (353)
T 2z80_A 244 TGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPD 294 (353)
T ss_dssp ---CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCT
T ss_pred cccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCC-CCCccCH
Confidence 1135677888888888 5655 22 3577999999999998 5666664
No 45
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=3.7e-22 Score=185.23 Aligned_cols=131 Identities=18% Similarity=0.178 Sum_probs=107.6
Q ss_pred CCccEEEeecCCCcCCCC--CCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCeee
Q 038877 7 EGAKRISLMKTGIQSPSE--IPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHLD 83 (298)
Q Consensus 7 ~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~ 83 (298)
+++++|++++|.+..++. +..+++|++|++++|.+..+++..+..+++|++|++++| .+..+|. .++.+++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEE
Confidence 578999999999888663 578899999999999888776666889999999999999 7887776 588899999999
Q ss_pred ccCCcccccc-hhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcc
Q 038877 84 LSWTRIRGLP-QELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWS 139 (298)
Q Consensus 84 l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 139 (298)
+++|.+..++ ..++.+++|++|++++|...+..+. .++++++|++|++++|.+..
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCch-hhcccccCCEEEccCCcccc
Confidence 9999888776 5688899999999999855444444 37889999999999887743
No 46
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=1.9e-21 Score=176.64 Aligned_cols=128 Identities=23% Similarity=0.221 Sum_probs=108.5
Q ss_pred cCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCeee
Q 038877 5 EWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHLD 83 (298)
Q Consensus 5 ~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~ 83 (298)
.|...++++++++.++.+|... .++|++|++++|.+..+++..+..+++|++|++++| .++.+ |..++.+++|++|+
T Consensus 29 ~~~~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 29 SNELESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ----CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEE
T ss_pred ccCCCcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEE
Confidence 3555689999999999988542 389999999999999888666999999999999999 78766 67899999999999
Q ss_pred ccCCcccccchhhcCCCcccEEeccCCccCCCCc--hhhhcCCCcccEEEeeccCCc
Q 038877 84 LSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIP--HQLISGFSKLEVLRLLWCGLW 138 (298)
Q Consensus 84 l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~ 138 (298)
+++|.++.+|.. .+++|++|++++|.. ..++ . .++++++|++|++++|.+.
T Consensus 107 Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l-~~l~~p~-~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 107 VSHNRLQNISCC--PMASLRHLDLSFNDF-DVLPVCK-EFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp CTTSCCCEECSC--CCTTCSEEECCSSCC-SBCCCCG-GGGGCTTCCEEEEECSBCC
T ss_pred CCCCcCCccCcc--ccccCCEEECCCCCc-cccCchH-hhcccCcccEEecCCCccc
Confidence 999999999877 899999999999954 4433 4 4899999999999999884
No 47
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=2.3e-22 Score=182.14 Aligned_cols=259 Identities=15% Similarity=0.141 Sum_probs=184.0
Q ss_pred CcccCCCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCcc--CCccccCcc
Q 038877 2 KVEEWEGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSK--LPSGISNLV 77 (298)
Q Consensus 2 ~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~p~~~~~l~ 77 (298)
.++++++|++|++++|.+..++ .+..+++|++|++++|.+..+++..++.+++|++|++++| .+.. .|..++.++
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLT 123 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCSCTTCT
T ss_pred hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC-cccccchhhhhhccC
Confidence 4788999999999999988854 3588999999999999998888777899999999999999 7764 466788999
Q ss_pred CCCeeeccCCc-ccccc-hhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchh
Q 038877 78 SLHHLDLSWTR-IRGLP-QELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEP 155 (298)
Q Consensus 78 ~L~~L~l~~~~-~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 155 (298)
+|++|++++|. +..++ ..+..+++|++|++++|...+..|.. ++.+++|++|+++.|.... .
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~---------------~ 187 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLSESAF---------------L 187 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSBSTT---------------H
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecccCcccc---------------c
Confidence 99999999986 66676 56889999999999998665556664 8899999999999887732 2
Q ss_pred HHHhhcCCCCccEEEEEecCccchhh-----------------------------hccccccccc---------------
Q 038877 156 LMKELLGLKHLNVLSWSLHSSLAVQK-----------------------------FLKYPKLLSI--------------- 191 (298)
Q Consensus 156 ~~~~l~~l~~L~~l~l~~~~~~~~~~-----------------------------~~~~~~~~~~--------------- 191 (298)
....+..+++|+.++++++....... +.........
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~ 267 (549)
T 2z81_A 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG 267 (549)
T ss_dssp HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCS
T ss_pred chhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccc
Confidence 22234568999999999877644210 0000011122
Q ss_pred --------------------------------------------eeEEEEeccCCCCcccccccccccccceecccCCcc
Q 038877 192 --------------------------------------------TQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLE 227 (298)
Q Consensus 192 --------------------------------------------L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 227 (298)
+++|++.+|.........+..+++|+.|++++|.+.
T Consensus 268 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~ 347 (549)
T 2z81_A 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347 (549)
T ss_dssp CCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCC
T ss_pred cccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccc
Confidence 233333333221111111234667777777777765
Q ss_pred e-ee--ecchhhhhccccccCCcccEEeccCCCCCCchhh----hhhcCCCcEEEeecCcccccccc
Q 038877 228 E-MK--IDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTW----LVFAQNLKELRIDSCYDVEEIIS 287 (298)
Q Consensus 228 ~-~~--~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----l~~~~~L~~L~l~~c~~l~~~~~ 287 (298)
. .. ...+ ..+++|+.|++++| .++.++. +..+++|++|++++| .++.++.
T Consensus 348 ~~~~~~~~~~--------~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~ 404 (549)
T 2z81_A 348 EEYLKNSACK--------GAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPD 404 (549)
T ss_dssp HHHHHHHTCT--------TSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCS
T ss_pred cccccchhhh--------hccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCccCCh
Confidence 5 21 1112 56899999999999 7887653 577999999999998 5556553
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=3.2e-22 Score=169.96 Aligned_cols=222 Identities=21% Similarity=0.279 Sum_probs=146.3
Q ss_pred CCCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeee
Q 038877 6 WEGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLD 83 (298)
Q Consensus 6 ~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 83 (298)
.++++.|++++|.+..++ .+..+++|++|++++|.+..+++..+..+++|++|++++| .+..+|..+. ++|++|+
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP--SSLVELR 129 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--TTCCEEE
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCcccc--ccCCEEE
Confidence 368999999999998854 4688999999999999998775555899999999999999 8888887654 7999999
Q ss_pred ccCCcccccch-hhcCCCcccEEeccCCccCC--CCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhh
Q 038877 84 LSWTRIRGLPQ-ELKALEKLRYLSLEGTRHLS--IIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKEL 160 (298)
Q Consensus 84 l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 160 (298)
+++|.+..++. .+..+++|+.|++++|.... ..+. .+..+ +|+.|++++|.+.. ++..+
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l-~L~~L~l~~n~l~~----------------l~~~~ 191 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG-AFDGL-KLNYLRISEAKLTG----------------IPKDL 191 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTT-SSCSC-CCSCCBCCSSBCSS----------------CCSSS
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcc-cccCC-ccCEEECcCCCCCc----------------cCccc
Confidence 99999987774 58899999999999985431 3333 36666 88888888887743 11111
Q ss_pred cCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhcc
Q 038877 161 LGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKL 240 (298)
Q Consensus 161 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 240 (298)
.++|+.|+++++....... ......++|+.|++++|.........+..+++|+.|++++|.+..++.. +
T Consensus 192 --~~~L~~L~l~~n~i~~~~~--~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-l------ 260 (332)
T 2ft3_A 192 --PETLNELHLDHNKIQAIEL--EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG-L------ 260 (332)
T ss_dssp --CSSCSCCBCCSSCCCCCCT--TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT-G------
T ss_pred --cCCCCEEECCCCcCCccCH--HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh-h------
Confidence 1455555555554332210 1122234455555555554444444455555555555555555442221 1
Q ss_pred ccccCCcccEEeccCCCCCCch
Q 038877 241 FRSGFRSLNTVSVDYCQKAKDL 262 (298)
Q Consensus 241 ~~~~~~~L~~L~l~~c~~l~~l 262 (298)
..+++|+.|++++| .++.+
T Consensus 261 --~~l~~L~~L~l~~N-~l~~~ 279 (332)
T 2ft3_A 261 --PDLKLLQVVYLHTN-NITKV 279 (332)
T ss_dssp --GGCTTCCEEECCSS-CCCBC
T ss_pred --hcCccCCEEECCCC-CCCcc
Confidence 24555555555555 44444
No 49
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=4e-22 Score=189.06 Aligned_cols=133 Identities=20% Similarity=0.304 Sum_probs=110.3
Q ss_pred CCCccEEEeecCCCcCC-C-CCCCCCcccEEEecCCc-ccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCe
Q 038877 6 WEGAKRISLMKTGIQSP-S-EIPTCPRLVTFLLDGNW-IEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHH 81 (298)
Q Consensus 6 ~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~ 81 (298)
.+++++|++++|.++.+ + .+..+++|++|++++|. +..+++..+..+++|++|++++| .+..+ |..++.+++|++
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTTSSCSCSSCCC
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCHhHccCCcccCE
Confidence 47899999999999884 3 56899999999999994 44775555899999999999999 77755 788999999999
Q ss_pred eeccCCcccc-cchh--hcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcc
Q 038877 82 LDLSWTRIRG-LPQE--LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWS 139 (298)
Q Consensus 82 L~l~~~~~~~-l~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 139 (298)
|++++|.+.. ++.. ++.+++|++|++++|...+..+...++++++|+.|++++|.+..
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 9999998874 5544 88999999999999965554443348999999999999998754
No 50
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=7.2e-22 Score=183.31 Aligned_cols=273 Identities=16% Similarity=0.125 Sum_probs=174.5
Q ss_pred CcccCCCccEEEeecCCCcCCCC--CCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCC-ccccCccC
Q 038877 2 KVEEWEGAKRISLMKTGIQSPSE--IPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLP-SGISNLVS 78 (298)
Q Consensus 2 ~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~~~~l~~ 78 (298)
.|+++++|++|++++|.+.+++. +..+++|++|++++|.+..++...+..+++|++|++++| .+..++ ..++.+++
T Consensus 44 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~ 122 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKN 122 (680)
T ss_dssp GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTT
T ss_pred HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCC-ccCccChhHccccCC
Confidence 37888999999999999888543 378999999999999988888766889999999999999 777665 57889999
Q ss_pred CCeeeccCCccccc-chhhcCCCcccEEeccCCccCCCCchhhhc--CCCcccEEEeeccCCccccccc--------ccc
Q 038877 79 LHHLDLSWTRIRGL-PQELKALEKLRYLSLEGTRHLSIIPHQLIS--GFSKLEVLRLLWCGLWSRKEQE--------EGS 147 (298)
Q Consensus 79 L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~--------~~~ 147 (298)
|++|++++|.+... +..++++++|++|++++|.. ..++...++ .+++|+.|++++|.+....... ...
T Consensus 123 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 201 (680)
T 1ziw_A 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI-QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 201 (680)
T ss_dssp CCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC-CCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEE
T ss_pred CCEEECCCCcccccCchhhcccccCCEEEccCCcc-cccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhh
Confidence 99999999988754 45678899999999999854 444433233 5688999999988774321110 000
Q ss_pred ccccC-----chhHHHhhcCCCCccEEEEEecCccchhhhccccccc--cceeEEEEeccCCCCccccccccccccccee
Q 038877 148 VLYDD-----AEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLL--SITQSVGVYFCQSPPLNVLHLAYMENLQELV 220 (298)
Q Consensus 148 ~~~~~-----~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 220 (298)
+.... .......+ ..++|+.++++++....... ...... ++|++|++++|.........+..+++|++|+
T Consensus 202 l~~~~l~~~~~~~~~~~l-~~~~L~~L~L~~n~l~~~~~--~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (680)
T 1ziw_A 202 LNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSN--TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 278 (680)
T ss_dssp CTTCCCHHHHHHHHHHHH-TTSCCCEEECTTSCCCEECT--TTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ccccccChhhHHHHHHHh-hhccccEEEccCCcccccCh--hHhhccCcCCCCEEECCCCCcCccCcccccCcccccEee
Confidence 00000 00111111 23567777776655433211 111111 3377777777765555555667777777777
Q ss_pred cccCCcceeeecchhh--------------hh-----cc------ccccCCcccEEeccCCCCCCchh--hhhhcCCCcE
Q 038877 221 ILNSDLEEMKIDSAEE--------------VK-----KL------FRSGFRSLNTVSVDYCQKAKDLT--WLVFAQNLKE 273 (298)
Q Consensus 221 l~~~~~~~~~~~~~~~--------------~~-----~~------~~~~~~~L~~L~l~~c~~l~~l~--~l~~~~~L~~ 273 (298)
+++|.+.......+.. +. .+ .-..+++|+.|++++| .++.++ .+..+++|++
T Consensus 279 L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~ 357 (680)
T 1ziw_A 279 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSNMFTGLINLKY 357 (680)
T ss_dssp CCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC-CBCCCCTTTTTTCTTCCE
T ss_pred CCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC-ccCCCChhHhccccCCcE
Confidence 7777666533322200 00 00 0134566666666666 455442 2456777777
Q ss_pred EEeecCc
Q 038877 274 LRIDSCY 280 (298)
Q Consensus 274 L~l~~c~ 280 (298)
|++.+|.
T Consensus 358 L~Ls~n~ 364 (680)
T 1ziw_A 358 LSLSNSF 364 (680)
T ss_dssp EECTTCB
T ss_pred EECCCCc
Confidence 7777764
No 51
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=3.8e-22 Score=181.40 Aligned_cols=128 Identities=26% Similarity=0.311 Sum_probs=58.2
Q ss_pred CccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCC-ccccCccCCCeeec
Q 038877 8 GAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLP-SGISNLVSLHHLDL 84 (298)
Q Consensus 8 ~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l 84 (298)
+++.|++++|.++.++ .+..+++|++|++++|.+..+++..+..+++|++|++++| .+..++ ..++.+++|++|++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEEC
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCccccccccc
Confidence 3455555555544432 2344555555555555444444333444555555555555 343332 34444555555555
Q ss_pred cCCcccccch-hhcCCCcccEEeccCCccCC-CCchhhhcCCCcccEEEeeccCC
Q 038877 85 SWTRIRGLPQ-ELKALEKLRYLSLEGTRHLS-IIPHQLISGFSKLEVLRLLWCGL 137 (298)
Q Consensus 85 ~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~ 137 (298)
++|.+..++. .++.+++|++|++++|.... .+|.. ++++++|++|++++|.+
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l 161 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKI 161 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCcc
Confidence 5544444432 24444455555554442222 13332 44444455554444443
No 52
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.88 E-value=1.1e-23 Score=177.48 Aligned_cols=246 Identities=13% Similarity=0.059 Sum_probs=189.2
Q ss_pred ccCCCccEEEeecCCCcCCCC-CCCCCcccEEEecCCccc--ccCchHHh-------cCCCccEEEccCCcCCc-cCCcc
Q 038877 4 EEWEGAKRISLMKTGIQSPSE-IPTCPRLVTFLLDGNWIE--EITDGFFR-------SMSSLRVLSLRRNLALS-KLPSG 72 (298)
Q Consensus 4 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~--~~~~~~~~-------~~~~L~~L~l~~~~~~~-~~p~~ 72 (298)
+..++|+.+++++|.+ .+|. +.. .|+.|++++|.+. .++.. +. .+++|++|++++| .+. .+|..
T Consensus 40 ~~~~~L~~l~l~~n~l-~~p~~~~~--~L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~ 114 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-ADLGQFTD--IIKSLSLKRLTVRAARIPSR-ILFGALRVLGISGLQELTLENL-EVTGTAPPP 114 (312)
T ss_dssp EEEEECTTHHHHCCTT-CCCHHHHH--HHHHCCCCEEEEEEEECBHH-HHHHHHHHHTTSCCCEEEEEEE-BCBSCCCCC
T ss_pred ccCCCceeEeeccccc-ccHHHHHH--HHhhcccccccccCCCcCHH-HHHHHHHhcCcCCccEEEccCC-cccchhHHH
Confidence 3455677788888887 5553 222 2899999999885 45554 33 6899999999999 666 67776
Q ss_pred c--cCccCCCeeeccCCcccccchhhcCC-----CcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcccccccc
Q 038877 73 I--SNLVSLHHLDLSWTRIRGLPQELKAL-----EKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEE 145 (298)
Q Consensus 73 ~--~~l~~L~~L~l~~~~~~~l~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 145 (298)
+ +.+++|++|++++|.++.+|..++.+ ++|++|++++|.. ..++...++++++|++|++++|.+.+
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~------ 187 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS-LNFSCEQVRVFPALSTLDLSDNPELG------ 187 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSC-CCCCTTTCCCCSSCCEEECCSCTTCH------
T ss_pred HHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCC-ccchHHHhccCCCCCEEECCCCCcCc------
Confidence 5 88999999999999999778777776 8999999999955 55553348999999999999999743
Q ss_pred ccccccCchhHHHhh--cCCCCccEEEEEecCccchhhhcc-ccccccceeEEEEeccCCCCcc-cccccccccccceec
Q 038877 146 GSVLYDDAEPLMKEL--LGLKHLNVLSWSLHSSLAVQKFLK-YPKLLSITQSVGVYFCQSPPLN-VLHLAYMENLQELVI 221 (298)
Q Consensus 146 ~~~~~~~~~~~~~~l--~~l~~L~~l~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l 221 (298)
....+..+ ..+++|+.|++++|....+..+.. .....++|+.|++++|...... ...+..+++|+.|++
T Consensus 188 -------~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 260 (312)
T 1wwl_A 188 -------ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260 (312)
T ss_dssp -------HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEEC
T ss_pred -------chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEEC
Confidence 22344555 789999999999998765443322 2234578999999999876554 345667899999999
Q ss_pred ccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchhhhhhcCCCcEEEeecCc
Q 038877 222 LNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDSCY 280 (298)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~L~~L~l~~c~ 280 (298)
++|.+..++. .-+++|+.|++++| .++.++.+..+++|++|++.+++
T Consensus 261 s~N~l~~ip~-----------~~~~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 261 SFTGLKQVPK-----------GLPAKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp TTSCCSSCCS-----------SCCSEEEEEECCSS-CCCSCCCTTTSCEEEEEECTTCT
T ss_pred CCCccChhhh-----------hccCCceEEECCCC-CCCCChhHhhCCCCCEEeccCCC
Confidence 9999875321 22389999999999 78888777889999999999874
No 53
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=8.2e-22 Score=179.23 Aligned_cols=155 Identities=21% Similarity=0.254 Sum_probs=113.7
Q ss_pred CcccCCCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccC
Q 038877 2 KVEEWEGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVS 78 (298)
Q Consensus 2 ~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~ 78 (298)
+|+++++|++|++++|.+.+++ .+..+++|++|++++|.+..+++..+..+++|++|++++| .+..++. .++.+++
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~ 125 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKT 125 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTT
T ss_pred HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc-ccccCCCcccccccc
Confidence 4677888888888888887754 3477888888888888887776555888888888888888 7776654 5788888
Q ss_pred CCeeeccCCcccc--cchhhcCCCcccEEeccCCccCCCCchhhhcCCCcc----cEEEeeccCCccccccccccccccC
Q 038877 79 LHHLDLSWTRIRG--LPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKL----EVLRLLWCGLWSRKEQEEGSVLYDD 152 (298)
Q Consensus 79 L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L----~~L~l~~~~~~~~~~~~~~~~~~~~ 152 (298)
|++|++++|.+.. +|..++++++|++|++++|.. ..++...++.+++| +.+++++|.+..
T Consensus 126 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~------------- 191 (570)
T 2z63_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMNF------------- 191 (570)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC-CEECGGGGHHHHTCTTCCCEEECTTCCCCE-------------
T ss_pred ccEEecCCCccceecChhhhcccCCCCEEeCcCCcc-ceecHHHccchhccchhhhhcccCCCCcee-------------
Confidence 8888888887774 678888888888888888844 33333336666666 788888887732
Q ss_pred chhHHHhhcCCCCccEEEEEec
Q 038877 153 AEPLMKELLGLKHLNVLSWSLH 174 (298)
Q Consensus 153 ~~~~~~~l~~l~~L~~l~l~~~ 174 (298)
..+..+... +|+.++++.+
T Consensus 192 --~~~~~~~~~-~L~~L~l~~n 210 (570)
T 2z63_A 192 --IQPGAFKEI-RLHKLTLRNN 210 (570)
T ss_dssp --ECTTTTTTC-EEEEEEEESC
T ss_pred --cCHHHhccC-cceeEecccc
Confidence 223333333 6777777765
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=2.5e-21 Score=160.93 Aligned_cols=221 Identities=17% Similarity=0.137 Sum_probs=180.9
Q ss_pred cEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCC-ccccCccCCCeeeccCCccccc-chhhcCCCcccEEeccC
Q 038877 32 VTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLP-SGISNLVSLHHLDLSWTRIRGL-PQELKALEKLRYLSLEG 109 (298)
Q Consensus 32 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~ 109 (298)
++++.+++.+..+|.. ..++|++|+++++ .+..++ ..+..+++|++|++++|.++.+ +..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~~ip~~---~~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVG---IPAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSCCTT---CCTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcccCCcC---CCCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 6788888888888764 3578999999999 888775 5689999999999999999866 67799999999999999
Q ss_pred CccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccccccc
Q 038877 110 TRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLL 189 (298)
Q Consensus 110 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~ 189 (298)
|..+..++...+.++++|+.|++++|.+.. ..+..+..+++|+.|+++++....... ......
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l 152 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQE---------------LGPGLFRGLAALQYLYLQDNALQALPD--DTFRDL 152 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCC---------------CCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCE---------------ECHhHhhCCcCCCEEECCCCcccccCH--hHhccC
Confidence 964666654458999999999999999843 345667889999999999987654332 123446
Q ss_pred cceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchh--hhhh
Q 038877 190 SITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT--WLVF 267 (298)
Q Consensus 190 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~ 267 (298)
++|+.|++++|.........+..+++|+.|++++|.+.......+ ..+++|+.|++++| .++.++ .+..
T Consensus 153 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--------~~l~~L~~L~l~~n-~l~~~~~~~~~~ 223 (285)
T 1ozn_A 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF--------RDLGRLMTLYLFAN-NLSALPTEALAP 223 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--------TTCTTCCEEECCSS-CCSCCCHHHHTT
T ss_pred CCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHc--------cCcccccEeeCCCC-cCCcCCHHHccc
Confidence 789999999997766666678899999999999999888655555 57899999999999 777775 3678
Q ss_pred cCCCcEEEeecCccc
Q 038877 268 AQNLKELRIDSCYDV 282 (298)
Q Consensus 268 ~~~L~~L~l~~c~~l 282 (298)
+++|++|++.+++-.
T Consensus 224 l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 224 LRALQYLRLNDNPWV 238 (285)
T ss_dssp CTTCCEEECCSSCEE
T ss_pred CcccCEEeccCCCcc
Confidence 999999999998543
No 55
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=3.5e-21 Score=182.62 Aligned_cols=115 Identities=21% Similarity=0.203 Sum_probs=89.7
Q ss_pred CcccCCCccEEEeecCCCc-CC-C-CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCcc-CCcc--ccC
Q 038877 2 KVEEWEGAKRISLMKTGIQ-SP-S-EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSK-LPSG--ISN 75 (298)
Q Consensus 2 ~~~~~~~L~~L~l~~~~~~-~~-~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~p~~--~~~ 75 (298)
+|+++++|++|++++|... .+ | .+..+++|++|++++|.+..+.+..+..+++|++|++++| .+.. +|.. ++.
T Consensus 43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRN 121 (844)
T ss_dssp SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSS
T ss_pred HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC-CCCcccccCccccc
Confidence 4788899999999998543 34 3 4588999999999999888665545889999999999999 6653 4543 888
Q ss_pred ccCCCeeeccCCccccc--chhhcCCCcccEEeccCCccCCCCc
Q 038877 76 LVSLHHLDLSWTRIRGL--PQELKALEKLRYLSLEGTRHLSIIP 117 (298)
Q Consensus 76 l~~L~~L~l~~~~~~~l--~~~~~~l~~L~~L~l~~~~~~~~~~ 117 (298)
+++|++|++++|.+..+ +..++++++|++|++++|......+
T Consensus 122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 99999999999988754 3568899999999998885444333
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.87 E-value=4.8e-23 Score=173.95 Aligned_cols=242 Identities=14% Similarity=0.099 Sum_probs=177.3
Q ss_pred cCCCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCee
Q 038877 5 EWEGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHL 82 (298)
Q Consensus 5 ~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 82 (298)
.+++|++|++++|.+..++ .+..+++|++|++++|.+..+++ +..+++|++|++++| .+..++ ..++|++|
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~~l~----~~~~L~~L 104 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELL----VGPSIETL 104 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS-EEEEEE----ECTTCCEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC-cccccc----CCCCcCEE
Confidence 4568899999998888865 34788899999999998876554 778889999999988 666554 33788999
Q ss_pred eccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhh-c
Q 038877 83 DLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKEL-L 161 (298)
Q Consensus 83 ~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ 161 (298)
++++|.+..++.. .+++|+.|++++|.. ..++...++.+++|+.|++++|.+.. ..+..+ .
T Consensus 105 ~l~~n~l~~~~~~--~~~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~---------------~~~~~~~~ 166 (317)
T 3o53_A 105 HAANNNISRVSCS--RGQGKKNIYLANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDT---------------VNFAELAA 166 (317)
T ss_dssp ECCSSCCSEEEEC--CCSSCEEEECCSSCC-CSGGGBCTGGGSSEEEEECTTSCCCE---------------EEGGGGGG
T ss_pred ECCCCccCCcCcc--ccCCCCEEECCCCCC-CCccchhhhccCCCCEEECCCCCCCc---------------ccHHHHhh
Confidence 9999888866533 367899999998844 44544347888999999999988842 233334 3
Q ss_pred CCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccc
Q 038877 162 GLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLF 241 (298)
Q Consensus 162 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 241 (298)
.+++|+.|++++|....+... ...++|+.|++++|....... .+..+++|+.|++++|.+..++.. +
T Consensus 167 ~l~~L~~L~L~~N~l~~~~~~----~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~l~~~-~------- 233 (317)
T 3o53_A 167 SSDTLEHLNLQYNFIYDVKGQ----VVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKA-L------- 233 (317)
T ss_dssp GTTTCCEEECTTSCCCEEECC----CCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECTT-C-------
T ss_pred ccCcCCEEECCCCcCcccccc----cccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCcccchhhH-h-------
Confidence 678899999988876554322 235788999999987654333 377889999999999988765332 2
Q ss_pred cccCCcccEEeccCCCCCC--ch-hhhhhcCCCcEEEeecCccccccc
Q 038877 242 RSGFRSLNTVSVDYCQKAK--DL-TWLVFAQNLKELRIDSCYDVEEII 286 (298)
Q Consensus 242 ~~~~~~L~~L~l~~c~~l~--~l-~~l~~~~~L~~L~l~~c~~l~~~~ 286 (298)
..+++|+.|++++| .+. .+ .++..+++|+.+++.++..++...
T Consensus 234 -~~l~~L~~L~l~~N-~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 234 -RFSQNLEHFDLRGN-GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp -CCCTTCCEEECTTC-CCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred -hcCCCCCEEEccCC-CccCcCHHHHHhccccceEEECCCchhccCCc
Confidence 46789999999998 444 23 345678888888888766655443
No 57
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=4.6e-21 Score=161.06 Aligned_cols=198 Identities=21% Similarity=0.290 Sum_probs=159.9
Q ss_pred cccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCee
Q 038877 3 VEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHL 82 (298)
Q Consensus 3 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 82 (298)
.+++++|+.|++.++.+..++.+..+++|++|++++|.+..++. +..+++|++|++++| .+..++ .+..+++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEE
T ss_pred HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEE
Confidence 34578899999999999888888889999999999998887776 788999999999999 777775 57889999999
Q ss_pred eccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcC
Q 038877 83 DLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLG 162 (298)
Q Consensus 83 ~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (298)
++++|.++.++. +..+++|++|++++| .+..++. ++.+++|+.|++++|.+.. ++. +..
T Consensus 113 ~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~----------------~~~-l~~ 171 (308)
T 1h6u_A 113 DLTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQVSD----------------LTP-LAN 171 (308)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCC----------------CGG-GTT
T ss_pred ECCCCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCCcCCC----------------Chh-hcC
Confidence 999999888765 888999999999998 4455555 7889999999999998843 222 778
Q ss_pred CCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeee
Q 038877 163 LKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKI 231 (298)
Q Consensus 163 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 231 (298)
+++|+.|+++++....+.. ....++|+.|++++|...... .+..+++|+.|++++|.+...+.
T Consensus 172 l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 172 LSKLTTLKADDNKISDISP----LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG----GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCCE
T ss_pred CCCCCEEECCCCccCcChh----hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCCe
Confidence 8999999999887765443 334577899999988765444 47888899999999988766433
No 58
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=4.1e-21 Score=155.53 Aligned_cols=203 Identities=15% Similarity=0.158 Sum_probs=128.8
Q ss_pred CcccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCC
Q 038877 2 KVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLH 80 (298)
Q Consensus 2 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~ 80 (298)
..+.|...+.+.+.+..++.+|. -.+++++|++++|.+..++...+..+++|++|++++|..++.++. .+..+++|+
T Consensus 6 ~~C~C~~~~~~~v~c~~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~ 83 (239)
T 2xwt_C 6 PPCECHQEEDFRVTCKDIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVT 83 (239)
T ss_dssp SSCSEEECSTTEEEECSCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCC
T ss_pred CCCeeCCCCcceeEccCccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCc
Confidence 34444432333444444677776 345899999999988887776688899999999998832776654 678888999
Q ss_pred eeeccC-Ccccccc-hhhcCCCcccEEeccCCccCCCCchhhhcCCCccc---EEEeecc-CCccccccccccccccCch
Q 038877 81 HLDLSW-TRIRGLP-QELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLE---VLRLLWC-GLWSRKEQEEGSVLYDDAE 154 (298)
Q Consensus 81 ~L~l~~-~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~~~~~ 154 (298)
+|++++ |.++.++ ..+..+++|++|++++|. +..+|. +..+++|+ .|++++| .+..
T Consensus 84 ~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~--------------- 145 (239)
T 2xwt_C 84 HIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPD--LTKVYSTDIFFILEITDNPYMTS--------------- 145 (239)
T ss_dssp EEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCC--CTTCCBCCSEEEEEEESCTTCCE---------------
T ss_pred EEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccc--cccccccccccEEECCCCcchhh---------------
Confidence 999988 7888776 457788888888888884 455665 67777777 8888888 6632
Q ss_pred hHHHhhcCCCCcc-EEEEEecCccchhhhccccccccceeEEEEeccC-CCCccccccccc-ccccceecccCCcc
Q 038877 155 PLMKELLGLKHLN-VLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQ-SPPLNVLHLAYM-ENLQELVILNSDLE 227 (298)
Q Consensus 155 ~~~~~l~~l~~L~-~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l-~~L~~L~l~~~~~~ 227 (298)
.....+..+++|+ .++++++....++.. .... +.|+.|++.+|. ........+..+ ++|+.|++++|.+.
T Consensus 146 i~~~~~~~l~~L~~~L~l~~n~l~~i~~~--~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 146 IPVNAFQGLCNETLTLKLYNNGFTSVQGY--AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp ECTTTTTTTBSSEEEEECCSCCCCEECTT--TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred cCcccccchhcceeEEEcCCCCCcccCHh--hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 2223456677777 777766654332210 0111 345555555552 333333334444 45555555554443
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=1e-21 Score=165.70 Aligned_cols=236 Identities=14% Similarity=0.085 Sum_probs=180.6
Q ss_pred ccEEEeecCCCcCCC-CC-CCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccC
Q 038877 9 AKRISLMKTGIQSPS-EI-PTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSW 86 (298)
Q Consensus 9 L~~L~l~~~~~~~~~-~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 86 (298)
++..+++.+.+...+ .+ ..+++|++|++++|.+..+++..+..+++|++|++++| .+...++ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcC
Confidence 334444444444321 22 56789999999999999887666999999999999999 7776654 88999999999999
Q ss_pred CcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCc
Q 038877 87 TRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHL 166 (298)
Q Consensus 87 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 166 (298)
|.++.++. .++|++|++++|. +..++. ..+++|+.|++++|.+.. ..+..+..+++|
T Consensus 90 n~l~~l~~----~~~L~~L~l~~n~-l~~~~~---~~~~~L~~L~l~~N~l~~---------------~~~~~~~~l~~L 146 (317)
T 3o53_A 90 NYVQELLV----GPSIETLHAANNN-ISRVSC---SRGQGKKNIYLANNKITM---------------LRDLDEGCRSRV 146 (317)
T ss_dssp SEEEEEEE----CTTCCEEECCSSC-CSEEEE---CCCSSCEEEECCSSCCCS---------------GGGBCTGGGSSE
T ss_pred CccccccC----CCCcCEEECCCCc-cCCcCc---cccCCCCEEECCCCCCCC---------------ccchhhhccCCC
Confidence 99887663 4899999999994 444443 457899999999999843 334567778999
Q ss_pred cEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCC
Q 038877 167 NVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFR 246 (298)
Q Consensus 167 ~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (298)
+.|+++++....... .......+.|++|++++|..... .....+++|+.|++++|.+..++.. + ..++
T Consensus 147 ~~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l~~~-~--------~~l~ 214 (317)
T 3o53_A 147 QYLDLKLNEIDTVNF-AELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGPE-F--------QSAA 214 (317)
T ss_dssp EEEECTTSCCCEEEG-GGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECGG-G--------GGGT
T ss_pred CEEECCCCCCCcccH-HHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcchhh-h--------cccC
Confidence 999999887654321 11122357899999999976444 3344589999999999999886544 3 4689
Q ss_pred cccEEeccCCCCCCchhh-hhhcCCCcEEEeecCccc
Q 038877 247 SLNTVSVDYCQKAKDLTW-LVFAQNLKELRIDSCYDV 282 (298)
Q Consensus 247 ~L~~L~l~~c~~l~~l~~-l~~~~~L~~L~l~~c~~l 282 (298)
+|+.|++++| .++.++. +..+++|++|++.+++-.
T Consensus 215 ~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 215 GVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp TCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred cccEEECcCC-cccchhhHhhcCCCCCEEEccCCCcc
Confidence 9999999999 7887753 567899999999998654
No 60
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=6.6e-22 Score=176.29 Aligned_cols=233 Identities=14% Similarity=0.095 Sum_probs=169.6
Q ss_pred cCCCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCee
Q 038877 5 EWEGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHL 82 (298)
Q Consensus 5 ~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 82 (298)
.+++|+.|++++|.+..++ .+..+++|++|++++|.+...++ +..+++|++|++++| .+..+|. .++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEE----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCC----CCCcCEE
Confidence 3558899999999888865 45788999999999998875555 778889999999998 7766553 3788999
Q ss_pred eccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhc-
Q 038877 83 DLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELL- 161 (298)
Q Consensus 83 ~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~- 161 (298)
++++|.+..++.. .+++|+.|++++|...+..|. .++++++|+.|++++|.+.+ ..+..+.
T Consensus 105 ~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~---------------~~~~~l~~ 166 (487)
T 3oja_A 105 HAANNNISRVSCS--RGQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDT---------------VNFAELAA 166 (487)
T ss_dssp ECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGB-CGGGGSSEEEEECTTSCCCE---------------EEGGGGGG
T ss_pred ECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCch-hhcCCCCCCEEECCCCCCCC---------------cChHHHhh
Confidence 9999888866543 467899999998855444344 37888999999999988832 3444554
Q ss_pred CCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccc
Q 038877 162 GLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLF 241 (298)
Q Consensus 162 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 241 (298)
.+++|+.|++++|........ ...+.|+.|++++|...... ..+..+++|+.|++++|.+..++.. +
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~~----~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~~lp~~-l------- 233 (487)
T 3oja_A 167 SSDTLEHLNLQYNFIYDVKGQ----VVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLIEKA-L------- 233 (487)
T ss_dssp GTTTCCEEECTTSCCCEEECC----CCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCEECTT-C-------
T ss_pred hCCcccEEecCCCcccccccc----ccCCCCCEEECCCCCCCCCC-HhHcCCCCccEEEecCCcCcccchh-h-------
Confidence 678899999988876554321 23578889999988765433 3477888999999999888764332 2
Q ss_pred cccCCcccEEeccCCCCCC--chh-hhhhcCCCcEEEee
Q 038877 242 RSGFRSLNTVSVDYCQKAK--DLT-WLVFAQNLKELRID 277 (298)
Q Consensus 242 ~~~~~~L~~L~l~~c~~l~--~l~-~l~~~~~L~~L~l~ 277 (298)
..+++|+.|++++|+ +. .++ ++..++.|+.+.+.
T Consensus 234 -~~l~~L~~L~l~~N~-l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 234 -RFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp -CCCTTCCEEECTTCC-BCHHHHHHHHTTCHHHHHHHHH
T ss_pred -ccCCCCCEEEcCCCC-CcCcchHHHHHhCCCCcEEecc
Confidence 467889999999884 44 232 34556666666554
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=5.9e-20 Score=167.38 Aligned_cols=238 Identities=18% Similarity=0.134 Sum_probs=121.8
Q ss_pred CccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCC
Q 038877 8 GAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWT 87 (298)
Q Consensus 8 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~ 87 (298)
+++.|+++++.++.+|.... ++|++|++++|.+..+|. .+++|++|++++| .++.+|. .+++|++|++++|
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCC
Confidence 45666666666666554322 566666666666655554 3456666666666 5555554 4455666666666
Q ss_pred cccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcccccc----ccccccccCchhHHHhhcCC
Q 038877 88 RIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQ----EEGSVLYDDAEPLMKELLGL 163 (298)
Q Consensus 88 ~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~l 163 (298)
.++.+|. .+++|+.|++++| .+..+|.. +++|++|++++|.+...... ....+..+....++ ..+
T Consensus 112 ~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~----l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~---~~~ 180 (622)
T 3g06_A 112 PLTHLPA---LPSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLP---MLP 180 (622)
T ss_dssp CCCCCCC---CCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC---CCC
T ss_pred cCCCCCC---CCCCcCEEECCCC-CCCcCCCC----CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCc---ccC
Confidence 5555554 3445555555555 23334331 24555555555544320000 00000000000011 223
Q ss_pred CCccEEEEEecCccchhhhcc--------------ccccccceeEEEEeccCCCCcccccccccccccceecccCCccee
Q 038877 164 KHLNVLSWSLHSSLAVQKFLK--------------YPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEM 229 (298)
Q Consensus 164 ~~L~~l~l~~~~~~~~~~~~~--------------~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 229 (298)
++|+.|++++|....++.... .....++|+.|++++|...... ..+++|+.|++++|.+..+
T Consensus 181 ~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~l 256 (622)
T 3g06_A 181 SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSL 256 (622)
T ss_dssp TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCC
T ss_pred CCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcC
Confidence 566666666555433221110 0011234555555555433221 2345666666666655542
Q ss_pred eecchhhhhccccccCCcccEEeccCCCCCCchh-hhhhcCCCcEEEeecCccc
Q 038877 230 KIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT-WLVFAQNLKELRIDSCYDV 282 (298)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~~~~L~~L~l~~c~~l 282 (298)
+ ..+++|+.|++++| .++.+| .+..+++|+.|++.+++.-
T Consensus 257 p------------~~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 257 P------------MLPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp C------------CCCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred C------------cccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCC
Confidence 2 14678888888888 677775 3677888888888887643
No 62
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.84 E-value=9.2e-20 Score=161.00 Aligned_cols=118 Identities=18% Similarity=0.198 Sum_probs=59.5
Q ss_pred CccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCC
Q 038877 8 GAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWT 87 (298)
Q Consensus 8 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~ 87 (298)
+|++|++++|.+.++|.+..+++|++|++++|.+..+|.. ..+|++|++++| .+..+| .++.+++|++|++++|
T Consensus 132 ~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNN 205 (454)
T ss_dssp TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS
T ss_pred CCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCC-cCCcCc-cccCCCCCCEEECCCC
Confidence 4445555555444444444455555555555544443332 134555555555 444444 3455555555555555
Q ss_pred cccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCC
Q 038877 88 RIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGL 137 (298)
Q Consensus 88 ~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 137 (298)
.+..+|... ++|++|++++| .+..+|. ++++++|+.|++++|.+
T Consensus 206 ~l~~l~~~~---~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 206 SLKKLPDLP---LSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLL 249 (454)
T ss_dssp CCSSCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCC
T ss_pred cCCcCCCCc---CcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCcC
Confidence 555444321 35555555555 2334553 55666666666666655
No 63
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=7.7e-20 Score=153.57 Aligned_cols=204 Identities=20% Similarity=0.270 Sum_probs=137.0
Q ss_pred cCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccchh
Q 038877 16 KTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQE 95 (298)
Q Consensus 16 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~ 95 (298)
.+.+.++.....+++|++|++++|.+..++. +..+++|++|++++| .+..++. +..+++|++|++++|.++.++ .
T Consensus 28 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~ 102 (308)
T 1h6u_A 28 KSNVTDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKNVS-A 102 (308)
T ss_dssp CSSTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSCCG-G
T ss_pred CCCcCceecHHHcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCCCch-h
Confidence 3333343334567788888888888777663 778888888888888 7777766 778888888888888887765 5
Q ss_pred hcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecC
Q 038877 96 LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHS 175 (298)
Q Consensus 96 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~ 175 (298)
+..+++|++|++++|. +..++. +..+++|+.|++++|.+.. .+ .+..+++|+.|+++++.
T Consensus 103 ~~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~----------------~~-~l~~l~~L~~L~l~~n~ 162 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQ-ITDVTP--LAGLSNLQVLYLDLNQITN----------------IS-PLAGLTNLQYLSIGNAQ 162 (308)
T ss_dssp GTTCTTCCEEECTTSC-CCCCGG--GTTCTTCCEEECCSSCCCC----------------CG-GGGGCTTCCEEECCSSC
T ss_pred hcCCCCCCEEECCCCC-CCCchh--hcCCCCCCEEECCCCccCc----------------Cc-cccCCCCccEEEccCCc
Confidence 7778888888888884 455554 7888888888888887743 11 16677778888887776
Q ss_pred ccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCCcccEEeccC
Q 038877 176 SLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDY 255 (298)
Q Consensus 176 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 255 (298)
...... ...+++|+.|++++|...... .+..+++|+.|++++|.+..+. .+ ..+++|+.|++++
T Consensus 163 l~~~~~----l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~--~l--------~~l~~L~~L~l~~ 226 (308)
T 1h6u_A 163 VSDLTP----LANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVS--PL--------ANTSNLFIVTLTN 226 (308)
T ss_dssp CCCCGG----GTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCBCG--GG--------TTCTTCCEEEEEE
T ss_pred CCCChh----hcCCCCCCEEECCCCccCcCh--hhcCCCCCCEEEccCCccCccc--cc--------cCCCCCCEEEccC
Confidence 544332 233456677777766544332 2566667777777776665532 12 3566677777666
Q ss_pred CCCCCc
Q 038877 256 CQKAKD 261 (298)
Q Consensus 256 c~~l~~ 261 (298)
| .++.
T Consensus 227 N-~i~~ 231 (308)
T 1h6u_A 227 Q-TITN 231 (308)
T ss_dssp E-EEEC
T ss_pred C-eeec
Confidence 6 3443
No 64
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.83 E-value=9.8e-20 Score=150.10 Aligned_cols=151 Identities=21% Similarity=0.241 Sum_probs=104.8
Q ss_pred CccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCeeeccC
Q 038877 8 GAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHLDLSW 86 (298)
Q Consensus 8 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~ 86 (298)
+.+.++++++.++.+|... .+++++|++++|.+..++...+..+++|++|++++| .+..+|. .+..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCC
Confidence 4677888888877776432 267888888888877776655778888888888888 7776654 356788888888888
Q ss_pred Ccccccch-hhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCC
Q 038877 87 TRIRGLPQ-ELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKH 165 (298)
Q Consensus 87 ~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 165 (298)
|.+..++. .+..+++|++|++++|. +..++...++++++|+.|++++|.+.. .....+..+++
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~---------------~~~~~~~~l~~ 158 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQS---------------LPKGVFDKLTS 158 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCC---------------CCTTTTTTCTT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCc---------------cCHhHccCCcc
Confidence 87776664 45777888888888873 445554446778888888888877732 12233555666
Q ss_pred ccEEEEEecCc
Q 038877 166 LNVLSWSLHSS 176 (298)
Q Consensus 166 L~~l~l~~~~~ 176 (298)
|+.|+++++..
T Consensus 159 L~~L~L~~n~l 169 (270)
T 2o6q_A 159 LKELRLYNNQL 169 (270)
T ss_dssp CCEEECCSSCC
T ss_pred cceeEecCCcC
Confidence 66666665543
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.83 E-value=2.9e-20 Score=153.74 Aligned_cols=218 Identities=17% Similarity=0.107 Sum_probs=135.8
Q ss_pred EEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCC-ccccCccCCCeeeccCCcc
Q 038877 11 RISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLP-SGISNLVSLHHLDLSWTRI 89 (298)
Q Consensus 11 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~ 89 (298)
.++..+..+..+|... .++|++|++++|.+..++...+..+++|++|++++| .+..++ ..+..+++|++|++++|.+
T Consensus 11 ~~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCcc
Confidence 3444455555555421 246777777777777666544777777777777777 666554 3567777777777777777
Q ss_pred cccc-hhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccE
Q 038877 90 RGLP-QELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNV 168 (298)
Q Consensus 90 ~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 168 (298)
..++ ..+..+++|++|++++|.. ..++...++++++|++|++++|.+.. ..++..+..+++|+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~--------------~~l~~~~~~l~~L~~ 153 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQS--------------FKLPEYFSNLTNLEH 153 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCC-CCSTTCCCTTCTTCCEEECCSSCCCC--------------CCCCGGGGGCTTCCE
T ss_pred CccChhhhcCCccccEEECCCCCc-cccCchhcccCCCCCEEECcCCccce--------------ecCchhhccCCCCCE
Confidence 7554 4577777777777777743 33443236777777777777777631 123556667777777
Q ss_pred EEEEecCccchhhhcccccccccee----EEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhcccccc
Q 038877 169 LSWSLHSSLAVQKFLKYPKLLSITQ----SVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSG 244 (298)
Q Consensus 169 l~l~~~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 244 (298)
|+++++....+.. ........++ .|++++|.........+. ..+|+.|++++|.+..++...+ ..
T Consensus 154 L~Ls~N~l~~~~~--~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~--------~~ 222 (276)
T 2z62_A 154 LDLSSNKIQSIYC--TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIF--------DR 222 (276)
T ss_dssp EECCSSCCCEECG--GGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTT--------TT
T ss_pred EECCCCCCCcCCH--HHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHh--------cc
Confidence 7777776543221 1111122233 677777765433333332 3478888888888776554444 46
Q ss_pred CCcccEEeccCC
Q 038877 245 FRSLNTVSVDYC 256 (298)
Q Consensus 245 ~~~L~~L~l~~c 256 (298)
+++|+.|+++++
T Consensus 223 l~~L~~L~l~~N 234 (276)
T 2z62_A 223 LTSLQKIWLHTN 234 (276)
T ss_dssp CCSCCEEECCSS
T ss_pred cccccEEEccCC
Confidence 788888888865
No 66
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=1.9e-21 Score=165.43 Aligned_cols=247 Identities=16% Similarity=0.157 Sum_probs=165.9
Q ss_pred CccEEEeecCCCcCCCCCCCC--CcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCcc--CCccccCccCCCeee
Q 038877 8 GAKRISLMKTGIQSPSEIPTC--PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSK--LPSGISNLVSLHHLD 83 (298)
Q Consensus 8 ~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~ 83 (298)
.++.++++++.+.. ..+..+ ++++.|++.++.+...+.. +..+++|++|++++| .+.. +|..+..+++|++|+
T Consensus 48 ~~~~l~l~~~~~~~-~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 48 LWQTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TSSEEECTTCBCCH-HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEE
T ss_pred hheeeccccccCCH-HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEe
Confidence 36677777765542 112333 6788888888877755544 456888888888888 5552 566777888888888
Q ss_pred ccCCccc-ccchhhcCCCcccEEeccCCccCCC--CchhhhcCCCcccEEEeecc-CCccccccccccccccCchhHHHh
Q 038877 84 LSWTRIR-GLPQELKALEKLRYLSLEGTRHLSI--IPHQLISGFSKLEVLRLLWC-GLWSRKEQEEGSVLYDDAEPLMKE 159 (298)
Q Consensus 84 l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 159 (298)
+++|.+. ..+..++.+++|++|++++|..++. ++. .+.++++|++|++++| .+. ...++..
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~~~l~--------------~~~~~~~ 189 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-LLSSCSRLDELNLSWCFDFT--------------EKHVQVA 189 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-HHHHCTTCCEEECCCCTTCC--------------HHHHHHH
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-HHhcCCCCCEEcCCCCCCcC--------------hHHHHHH
Confidence 8888776 5666777888888888888843332 343 3677888888888888 662 2235666
Q ss_pred hcCCC-CccEEEEEecCc-cchhhhccccccccceeEEEEeccC-CCCcccccccccccccceecccCCcce-eeecchh
Q 038877 160 LLGLK-HLNVLSWSLHSS-LAVQKFLKYPKLLSITQSVGVYFCQ-SPPLNVLHLAYMENLQELVILNSDLEE-MKIDSAE 235 (298)
Q Consensus 160 l~~l~-~L~~l~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~ 235 (298)
+..++ +|+.|+++++.. .....++.....+++|+.|++++|. ..+.....+..+++|+.|++++|.... ..+..+
T Consensus 190 ~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l- 268 (336)
T 2ast_B 190 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL- 268 (336)
T ss_dssp HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG-
T ss_pred HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHH-
Confidence 77788 888888887742 2223333344456788888888887 455556677888999999999886332 333333
Q ss_pred hhhccccccCCcccEEeccCCCCCCc--hhhh-hhcCCCcEEEeecCccccccc
Q 038877 236 EVKKLFRSGFRSLNTVSVDYCQKAKD--LTWL-VFAQNLKELRIDSCYDVEEII 286 (298)
Q Consensus 236 ~~~~~~~~~~~~L~~L~l~~c~~l~~--l~~l-~~~~~L~~L~l~~c~~l~~~~ 286 (298)
..+++|+.|++++| +++ +..+ ..+|.|+ +. |..++.+.
T Consensus 269 -------~~~~~L~~L~l~~~--i~~~~~~~l~~~l~~L~---l~-~n~l~~~~ 309 (336)
T 2ast_B 269 -------GEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQ---IN-CSHFTTIA 309 (336)
T ss_dssp -------GGCTTCCEEECTTS--SCTTCHHHHHHHSTTSE---ES-CCCSCCTT
T ss_pred -------hcCCCCCEEeccCc--cCHHHHHHHHhhCcceE---Ee-cccCcccc
Confidence 46889999999988 443 3333 2355555 54 44555444
No 67
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.83 E-value=6.9e-20 Score=152.48 Aligned_cols=204 Identities=17% Similarity=0.084 Sum_probs=161.9
Q ss_pred cccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCee
Q 038877 3 VEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHL 82 (298)
Q Consensus 3 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 82 (298)
++++++++.+++.++.++.+|... .+++++|++++|.+..++...+..+++|++|++++| .++.++.. +.+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEE
Confidence 577899999999999999987542 378999999999998776666899999999999999 88877654 789999999
Q ss_pred eccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcC
Q 038877 83 DLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLG 162 (298)
Q Consensus 83 ~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (298)
++++|.+..+|..+..+++|++|++++| .+..++.+.+.++++|+.|++++|.+.. ..+..+..
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~---------------~~~~~~~~ 146 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKT---------------LPPGLLTP 146 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCC---------------CCTTTTTT
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCc---------------cChhhccc
Confidence 9999999999998999999999999999 4566665568999999999999999843 23345677
Q ss_pred CCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcce
Q 038877 163 LKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEE 228 (298)
Q Consensus 163 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 228 (298)
+++|+.|++++|....+.. ......++|+.|++++|..... +..+...+.|+.|++.+|....
T Consensus 147 l~~L~~L~L~~N~l~~l~~--~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 147 TPKLEKLSLANNNLTELPA--GLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CTTCCEEECTTSCCSCCCT--TTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBCC
T ss_pred ccCCCEEECCCCcCCccCH--HHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCccC
Confidence 8899999998886654332 1223457788888888865532 3345556688888888877654
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=2e-20 Score=166.71 Aligned_cols=219 Identities=15% Similarity=0.075 Sum_probs=174.6
Q ss_pred CCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccchhhcCCCcccEE
Q 038877 26 PTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYL 105 (298)
Q Consensus 26 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L 105 (298)
..+++|++|++++|.+..+++..+..+++|++|++++| .+...++ ++.+++|++|++++|.++.++. .++|+.|
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETL 104 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEE
Confidence 45669999999999999877666999999999999999 7776554 8899999999999999887764 3899999
Q ss_pred eccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccc
Q 038877 106 SLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKY 185 (298)
Q Consensus 106 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~ 185 (298)
++++|.. ..++. ..+++|+.|++++|.+. ...+..+..+++|+.|++++|....... ...
T Consensus 105 ~L~~N~l-~~~~~---~~l~~L~~L~L~~N~l~---------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l 164 (487)
T 3oja_A 105 HAANNNI-SRVSC---SRGQGKKNIYLANNKIT---------------MLRDLDEGCRSRVQYLDLKLNEIDTVNF-AEL 164 (487)
T ss_dssp ECCSSCC-CCEEE---CCCSSCEEEECCSSCCC---------------SGGGBCGGGGSSEEEEECTTSCCCEEEG-GGG
T ss_pred ECcCCcC-CCCCc---cccCCCCEEECCCCCCC---------------CCCchhhcCCCCCCEEECCCCCCCCcCh-HHH
Confidence 9999944 44443 45789999999999994 3445667788999999999987654321 112
Q ss_pred cccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchhh-
Q 038877 186 PKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTW- 264 (298)
Q Consensus 186 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~- 264 (298)
...++.|+.|++++|..... .....+++|+.|++++|.+..++.. + ..+++|+.|++++| .++.++.
T Consensus 165 ~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~--------~~l~~L~~L~Ls~N-~l~~lp~~ 232 (487)
T 3oja_A 165 AASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGPE-F--------QSAAGVTWISLRNN-KLVLIEKA 232 (487)
T ss_dssp GGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECGG-G--------GGGTTCSEEECTTS-CCCEECTT
T ss_pred hhhCCcccEEecCCCccccc--cccccCCCCCEEECCCCCCCCCCHh-H--------cCCCCccEEEecCC-cCcccchh
Confidence 22457899999999976544 3345689999999999999885544 3 47899999999999 7887763
Q ss_pred hhhcCCCcEEEeecCccc
Q 038877 265 LVFAQNLKELRIDSCYDV 282 (298)
Q Consensus 265 l~~~~~L~~L~l~~c~~l 282 (298)
+..+++|+.|++.+++..
T Consensus 233 l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 233 LRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCCCTTCCEEECTTCCBC
T ss_pred hccCCCCCEEEcCCCCCc
Confidence 567899999999998654
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.8e-19 Score=148.48 Aligned_cols=199 Identities=20% Similarity=0.216 Sum_probs=162.2
Q ss_pred CcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCeeeccCCcccccchh-hcCCCcccEEe
Q 038877 29 PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHLDLSWTRIRGLPQE-LKALEKLRYLS 106 (298)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~ 106 (298)
.+.++++++++.+..+|.. + .++++.|++++| .+..++. .+..+++|++|++++|.++.++.. +..+++|++|+
T Consensus 16 ~~~~~l~~~~~~l~~ip~~-~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSN-I--PADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCSSCCSC-C--CTTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCCccCCC-C--CCCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 4578999999999888865 2 368999999999 8887764 789999999999999999988765 58899999999
Q ss_pred ccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhcccc
Q 038877 107 LEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYP 186 (298)
Q Consensus 107 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~ 186 (298)
+++| .+..++...+.++++|+.|++++|.+.. ..+..+..+++|+.|+++++....+.. ...
T Consensus 92 l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~ 153 (270)
T 2o6q_A 92 VTDN-KLQALPIGVFDQLVNLAELRLDRNQLKS---------------LPPRVFDSLTKLTYLSLGYNELQSLPK--GVF 153 (270)
T ss_dssp CCSS-CCCCCCTTTTTTCSSCCEEECCSSCCCC---------------CCTTTTTTCTTCCEEECCSSCCCCCCT--TTT
T ss_pred CCCC-cCCcCCHhHcccccCCCEEECCCCccCe---------------eCHHHhCcCcCCCEEECCCCcCCccCH--hHc
Confidence 9999 4566776668999999999999999843 334557889999999999987654332 123
Q ss_pred ccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCC
Q 038877 187 KLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQ 257 (298)
Q Consensus 187 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 257 (298)
...++|+.|++++|.........+..+++|+.|++++|.+..++...+ ..+++|+.|++++++
T Consensus 154 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--------~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF--------DSLEKLKMLQLQENP 216 (270)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--------TTCTTCCEEECCSSC
T ss_pred cCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHh--------ccccCCCEEEecCCC
Confidence 445889999999998777766678889999999999998877655545 568999999999874
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.82 E-value=1.4e-19 Score=149.64 Aligned_cols=205 Identities=21% Similarity=0.181 Sum_probs=157.6
Q ss_pred CCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCC-ccccCccCCCeee
Q 038877 7 EGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLP-SGISNLVSLHHLD 83 (298)
Q Consensus 7 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~ 83 (298)
++|++|++++|.+..++ .+..+++|++|++++|.+..++...+..+++|++|++++| .+..++ ..+..+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEE
Confidence 46999999999998865 4588999999999999988777655889999999999999 777654 5788899999999
Q ss_pred ccCCcccccch-hhcCCCcccEEeccCCccCC-CCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhc
Q 038877 84 LSWTRIRGLPQ-ELKALEKLRYLSLEGTRHLS-IIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELL 161 (298)
Q Consensus 84 l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (298)
+++|.+..++. .++.+++|++|++++|.... .+|.. ++++++|+.|++++|.+... .......+.
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~------------~~~~~~~l~ 173 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI------------YCTDLRVLH 173 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEE------------CGGGGHHHH
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCcC------------CHHHhhhhh
Confidence 99998887665 58889999999999985433 24654 88999999999999988430 112234445
Q ss_pred CCCCcc-EEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcce
Q 038877 162 GLKHLN-VLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEE 228 (298)
Q Consensus 162 ~l~~L~-~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 228 (298)
.++.+. .++++++....+.. ......+|+.|++++|.........+..+++|+.|++++|.+..
T Consensus 174 ~L~~l~l~L~ls~n~l~~~~~---~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 174 QMPLLNLSLDLSLNPMNFIQP---GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp TCTTCCEEEECCSSCCCEECT---TSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred hccccceeeecCCCcccccCc---cccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 555555 78888877654332 22222478999999998776666667889999999999988764
No 71
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.82 E-value=6.3e-20 Score=151.41 Aligned_cols=198 Identities=21% Similarity=0.236 Sum_probs=135.2
Q ss_pred cccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCe
Q 038877 3 VEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHH 81 (298)
Q Consensus 3 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~ 81 (298)
+..+++|+.|++.++.+..++.+..+++|++|++++|.+..++. +..+++|++|++++| .+..++. .++.+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISA--LKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCE
T ss_pred cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchh--hcCCCCCCEEECCCC-ccCccChhHhcCCcCCCE
Confidence 34567788888888888887777788888888888887776542 778888888888888 6766644 4677888888
Q ss_pred eeccCCcccccchh-hcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhh
Q 038877 82 LDLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKEL 160 (298)
Q Consensus 82 L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 160 (298)
|++++|.++.++.. +..+++|++|++++| .+..++...++++++|+.|++++|.+.. ..+..+
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~~~~~ 177 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQS---------------LPEGVF 177 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC---------------CCTTTT
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCc---------------cCHHHh
Confidence 88888888766543 677888888888888 4455555556788888888888887732 223345
Q ss_pred cCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcce
Q 038877 161 LGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEE 228 (298)
Q Consensus 161 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 228 (298)
..+++|+.|++++|....... .....++.|+.|++.+|... ..+|.|+.|+++.|....
T Consensus 178 ~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 178 DKLTQLKDLRLYQNQLKSVPD--GVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSG 236 (272)
T ss_dssp TTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGG
T ss_pred cCCccCCEEECCCCcCCccCH--HHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCC
Confidence 667777777777765543221 11233456666666666321 234566666666655544
No 72
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.82 E-value=2.5e-19 Score=164.64 Aligned_cols=128 Identities=26% Similarity=0.309 Sum_probs=78.0
Q ss_pred CccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCeeec
Q 038877 8 GAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHLDL 84 (298)
Q Consensus 8 ~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l 84 (298)
.+++|++++|.++.++ .+..+++|++|++++|.+..+++.+|..+++|++|++++| .++.+|. .|.++.+|++|++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEEC
Confidence 4666666666666654 2466666666666666666666555666666666666666 5665543 4566666666666
Q ss_pred cCCcccccch-hhcCCCcccEEeccCCccCC-CCchhhhcCCCcccEEEeeccCC
Q 038877 85 SWTRIRGLPQ-ELKALEKLRYLSLEGTRHLS-IIPHQLISGFSKLEVLRLLWCGL 137 (298)
Q Consensus 85 ~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~ 137 (298)
++|.++.++. .++.+++|++|++++|.... ..|. .++.+++|++|++++|.+
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~-~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSCC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCch-hhccchhhhhhcccCccc
Confidence 6666665553 35666666666666663322 2233 256666666666665543
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=8.9e-20 Score=147.63 Aligned_cols=213 Identities=17% Similarity=0.202 Sum_probs=159.8
Q ss_pred EecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCeeeccCCc-ccccch-hhcCCCcccEEeccCCc
Q 038877 35 LLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHLDLSWTR-IRGLPQ-ELKALEKLRYLSLEGTR 111 (298)
Q Consensus 35 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~-~~~l~~-~~~~l~~L~~L~l~~~~ 111 (298)
.+.+..+..+|. + .++|++|++++| .++.+|. .++.+++|++|++++|. ++.++. .+..+++|++|++++|+
T Consensus 17 ~v~c~~l~~ip~--~--~~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n 91 (239)
T 2xwt_C 17 RVTCKDIQRIPS--L--PPSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91 (239)
T ss_dssp EEEECSCSSCCC--C--CTTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET
T ss_pred eeEccCccccCC--C--CCcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC
Confidence 333334666665 2 348999999999 8887765 78899999999999996 888775 68899999999999833
Q ss_pred cCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCcc---EEEEEec-Cccchhhhccccc
Q 038877 112 HLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLN---VLSWSLH-SSLAVQKFLKYPK 187 (298)
Q Consensus 112 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~---~l~l~~~-~~~~~~~~~~~~~ 187 (298)
.+..++...+.++++|+.|++++|.+.. ++. +..+++|+ .++++++ ....+.. ....
T Consensus 92 ~l~~i~~~~f~~l~~L~~L~l~~n~l~~----------------lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~--~~~~ 152 (239)
T 2xwt_C 92 NLTYIDPDALKELPLLKFLGIFNTGLKM----------------FPD-LTKVYSTDIFFILEITDNPYMTSIPV--NAFQ 152 (239)
T ss_dssp TCCEECTTSEECCTTCCEEEEEEECCCS----------------CCC-CTTCCBCCSEEEEEEESCTTCCEECT--TTTT
T ss_pred CeeEcCHHHhCCCCCCCEEeCCCCCCcc----------------ccc-cccccccccccEEECCCCcchhhcCc--cccc
Confidence 5667776568899999999999998843 222 66677776 9999988 5544332 1233
Q ss_pred ccccee-EEEEeccCCCCcccccccccccccceecccCC-cceeeecchhhhhccccccC-CcccEEeccCCCCCCchhh
Q 038877 188 LLSITQ-SVGVYFCQSPPLNVLHLAYMENLQELVILNSD-LEEMKIDSAEEVKKLFRSGF-RSLNTVSVDYCQKAKDLTW 264 (298)
Q Consensus 188 ~~~~L~-~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~l~~ 264 (298)
.++.|+ .|++++|.........+.. ++|+.|++++|. +..++...+ ..+ ++|+.|+++++ .++.++.
T Consensus 153 ~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~--------~~l~~~L~~L~l~~N-~l~~l~~ 222 (239)
T 2xwt_C 153 GLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAF--------GGVYSGPSLLDVSQT-SVTALPS 222 (239)
T ss_dssp TTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTT--------TTCSBCCSEEECTTC-CCCCCCC
T ss_pred chhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHh--------hccccCCcEEECCCC-ccccCCh
Confidence 457889 9999998766444444555 899999999995 666665555 567 99999999998 7887764
Q ss_pred hhhcCCCcEEEeecCccc
Q 038877 265 LVFAQNLKELRIDSCYDV 282 (298)
Q Consensus 265 l~~~~~L~~L~l~~c~~l 282 (298)
. .+++|+.|.+.+++.+
T Consensus 223 ~-~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 223 K-GLEHLKELIARNTWTL 239 (239)
T ss_dssp T-TCTTCSEEECTTC---
T ss_pred h-HhccCceeeccCccCC
Confidence 3 7899999999988653
No 74
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.81 E-value=3.4e-21 Score=167.01 Aligned_cols=37 Identities=24% Similarity=0.138 Sum_probs=18.5
Q ss_pred cCccCCCeeeccCCcccc-----cchhhcCCCcccEEeccCC
Q 038877 74 SNLVSLHHLDLSWTRIRG-----LPQELKALEKLRYLSLEGT 110 (298)
Q Consensus 74 ~~l~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~ 110 (298)
..+++|++|++++|.+.. ++..+..+++|++|++++|
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 132 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 132 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCC
Confidence 344555555555554442 3444455555555555555
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.81 E-value=7e-20 Score=151.14 Aligned_cols=187 Identities=19% Similarity=0.252 Sum_probs=151.4
Q ss_pred CcccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCC
Q 038877 2 KVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLH 80 (298)
Q Consensus 2 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~ 80 (298)
.++.+++|++|++++|.+.+++.+..+++|++|++++|.+..++...+..+++|++|++++| .+..++. .++.+++|+
T Consensus 58 ~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 58 GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCC
T ss_pred ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCC
Confidence 57789999999999999999888899999999999999999888776899999999999999 7877754 578999999
Q ss_pred eeeccCCcccccchh-hcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHh
Q 038877 81 HLDLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKE 159 (298)
Q Consensus 81 ~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (298)
+|++++|.++.++.. +..+++|++|++++|. +..++...++++++|+.|++++|.+.. ..+..
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~---------------~~~~~ 200 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKS---------------VPDGV 200 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSC---------------CCTTT
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCc---------------cCHHH
Confidence 999999999977754 6899999999999995 456666557999999999999999843 33455
Q ss_pred hcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccc
Q 038877 160 LLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYME 214 (298)
Q Consensus 160 l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 214 (298)
+..+++|+.+++++|.... .++.++.+.+..+...+..+.+++.++
T Consensus 201 ~~~l~~L~~L~l~~N~~~~---------~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 201 FDRLTSLQYIWLHDNPWDC---------TCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp TTTCTTCCEEECCSSCBCC---------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred HhCCcCCCEEEccCCCccc---------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence 7889999999999886532 234456666666654444444454443
No 76
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=5.4e-19 Score=151.11 Aligned_cols=243 Identities=12% Similarity=0.077 Sum_probs=184.9
Q ss_pred cccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCC-ccCCc-cccCccCCC
Q 038877 3 VEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLAL-SKLPS-GISNLVSLH 80 (298)
Q Consensus 3 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~p~-~~~~l~~L~ 80 (298)
+++|.. +.++.+++.++.+|... .+++++|++++|.++.++..+|..+++|++|++++| .+ +.+|. .|.++++++
T Consensus 6 ~C~C~~-~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~i~~~i~~~~f~~L~~l~ 82 (350)
T 4ay9_X 6 ICHCSN-RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN-DVLEVIEADVFSNLPKLH 82 (350)
T ss_dssp SSEEET-TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECC-TTCCEECTTSBCSCTTCC
T ss_pred ccEeeC-CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCC-CCCCccChhHhhcchhhh
Confidence 455543 67889999999988532 468999999999999999877999999999999999 65 45554 678888887
Q ss_pred ee-eccCCcccccc-hhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeecc-CCccccccccccccccCchhHH
Q 038877 81 HL-DLSWTRIRGLP-QELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWC-GLWSRKEQEEGSVLYDDAEPLM 157 (298)
Q Consensus 81 ~L-~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~ 157 (298)
++ .+.+|.+..++ ..+..+++|++|++++| .+..++...+....++..+++.++ .+.. ...
T Consensus 83 ~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~---------------l~~ 146 (350)
T 4ay9_X 83 EIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHT---------------IER 146 (350)
T ss_dssp EEEEEEETTCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCE---------------ECT
T ss_pred hhhcccCCcccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhcccccccc---------------ccc
Confidence 64 55668888775 56899999999999998 455566544566777888988764 3421 112
Q ss_pred HhhcCC-CCccEEEEEecCccchhhhccccccccceeEEEEeccC-CCCcccccccccccccceecccCCcceeeecchh
Q 038877 158 KELLGL-KHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQ-SPPLNVLHLAYMENLQELVILNSDLEEMKIDSAE 235 (298)
Q Consensus 158 ~~l~~l-~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 235 (298)
..+..+ ..++.++++++....+.. ......+++++.+.++. ........+..+++|+.|++++|.+..++
T Consensus 147 ~~f~~~~~~l~~L~L~~N~i~~i~~---~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp----- 218 (350)
T 4ay9_X 147 NSFVGLSFESVILWLNKNGIQEIHN---SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP----- 218 (350)
T ss_dssp TSSTTSBSSCEEEECCSSCCCEECT---TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC-----
T ss_pred cchhhcchhhhhhccccccccCCCh---hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC-----
Confidence 234444 468889999887654432 22233578999998644 45555567899999999999999987743
Q ss_pred hhhccccccCCcccEEeccCCCCCCchhhhhhcCCCcEEEeec
Q 038877 236 EVKKLFRSGFRSLNTVSVDYCQKAKDLTWLVFAQNLKELRIDS 278 (298)
Q Consensus 236 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~~~~L~~L~l~~ 278 (298)
...+..|+.|.+.+|.+++.+|.+..+++|+.+++.+
T Consensus 219 ------~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 219 ------SYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp ------SSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred ------hhhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 3567899999999999999999889999999999865
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.81 E-value=1.2e-19 Score=152.80 Aligned_cols=223 Identities=15% Similarity=0.121 Sum_probs=127.8
Q ss_pred ccEEEeecCCCcC--CCCC-C-------CCCcccEEEecCCccc-ccCchHH-hcCCCccEEEccCCcCCccCCccccCc
Q 038877 9 AKRISLMKTGIQS--PSEI-P-------TCPRLVTFLLDGNWIE-EITDGFF-RSMSSLRVLSLRRNLALSKLPSGISNL 76 (298)
Q Consensus 9 L~~L~l~~~~~~~--~~~~-~-------~~~~L~~L~l~~~~~~-~~~~~~~-~~~~~L~~L~l~~~~~~~~~p~~~~~l 76 (298)
|+.|++++|.+.. +|.. . .+++|++|++++|.+. .+|..++ ..+++|++|++++| .+...|..++.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHH
Confidence 5555666665543 3322 1 4667777777777665 4444421 66677777777777 555555555555
Q ss_pred -----cCCCeeeccCCcccccc-hhhcCCCcccEEeccCCccCCC--Cchh-hhcCCCcccEEEeeccCCcccccccccc
Q 038877 77 -----VSLHHLDLSWTRIRGLP-QELKALEKLRYLSLEGTRHLSI--IPHQ-LISGFSKLEVLRLLWCGLWSRKEQEEGS 147 (298)
Q Consensus 77 -----~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~--~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 147 (298)
++|++|++++|.+..++ ..++.+++|++|++++|...+. ++.. .++++++|+.|++++|.+..
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-------- 215 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET-------- 215 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC--------
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc--------
Confidence 66777777777666554 5566777777777777643332 1222 12666777777777776632
Q ss_pred ccccCchhHH-HhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCc
Q 038877 148 VLYDDAEPLM-KELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDL 226 (298)
Q Consensus 148 ~~~~~~~~~~-~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 226 (298)
....+ ..+..+++|+.|++++|........ ......++|++|++++|..... +..+. ++|+.|++++|.+
T Consensus 216 -----~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~l~~L~~L~Ls~N~l~~i-p~~~~--~~L~~L~Ls~N~l 286 (312)
T 1wwl_A 216 -----PSGVCSALAAARVQLQGLDLSHNSLRDAAGA-PSCDWPSQLNSLNLSFTGLKQV-PKGLP--AKLSVLDLSYNRL 286 (312)
T ss_dssp -----HHHHHHHHHHTTCCCSEEECTTSCCCSSCCC-SCCCCCTTCCEEECTTSCCSSC-CSSCC--SEEEEEECCSSCC
T ss_pred -----hHHHHHHHHhcCCCCCEEECCCCcCCcccch-hhhhhcCCCCEEECCCCccChh-hhhcc--CCceEEECCCCCC
Confidence 22233 2334566777777776655432211 1112235677777777765422 22233 6777777777777
Q ss_pred ceeeecchhhhhccccccCCcccEEeccCCCCCC
Q 038877 227 EEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAK 260 (298)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 260 (298)
..++. + ..+++|+.|+++++ .++
T Consensus 287 ~~~p~--~--------~~l~~L~~L~L~~N-~l~ 309 (312)
T 1wwl_A 287 DRNPS--P--------DELPQVGNLSLKGN-PFL 309 (312)
T ss_dssp CSCCC--T--------TTSCEEEEEECTTC-TTT
T ss_pred CCChh--H--------hhCCCCCEEeccCC-CCC
Confidence 66422 3 46777777777777 444
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.81 E-value=6.4e-20 Score=155.90 Aligned_cols=223 Identities=20% Similarity=0.126 Sum_probs=171.7
Q ss_pred CcccEEEecCCcccccCchHHhcC--CCccEEEccCCcCCccCCccccCccCCCeeeccCCccc--ccchhhcCCCcccE
Q 038877 29 PRLVTFLLDGNWIEEITDGFFRSM--SSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIR--GLPQELKALEKLRY 104 (298)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~l~~~~~~l~~L~~ 104 (298)
..++.++++++.+. +..+..+ ++++.++++++ .+...+..+..+++|++|++++|.+. .++..+..+++|++
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 34788999998765 2336666 89999999999 77766555678999999999999887 37888999999999
Q ss_pred EeccCCccCCCCchhhhcCCCcccEEEeecc-CCccccccccccccccCchhHHHhhcCCCCccEEEEEec-Cccchhhh
Q 038877 105 LSLEGTRHLSIIPHQLISGFSKLEVLRLLWC-GLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLH-SSLAVQKF 182 (298)
Q Consensus 105 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~-~~~~~~~~ 182 (298)
|++++|...+..+.. ++.+++|++|++++| .+. ...++..+..+++|+.|+++++ .... ..+
T Consensus 123 L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~--------------~~~l~~~~~~~~~L~~L~l~~~~~l~~-~~~ 186 (336)
T 2ast_B 123 LSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFS--------------EFALQTLLSSCSRLDELNLSWCFDFTE-KHV 186 (336)
T ss_dssp EECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCC--------------HHHHHHHHHHCTTCCEEECCCCTTCCH-HHH
T ss_pred EeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCC--------------HHHHHHHHhcCCCCCEEcCCCCCCcCh-HHH
Confidence 999999654455554 888999999999999 452 2246677888999999999998 5432 223
Q ss_pred cccccccc-ceeEEEEeccC--CCCc-ccccccccccccceecccCCc-ceeeecchhhhhccccccCCcccEEeccCCC
Q 038877 183 LKYPKLLS-ITQSVGVYFCQ--SPPL-NVLHLAYMENLQELVILNSDL-EEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQ 257 (298)
Q Consensus 183 ~~~~~~~~-~L~~L~l~~~~--~~~~-~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 257 (298)
......++ +|++|++++|. ..+. ....+..+++|+.|++++|.. ....+..+ ..+++|+.|++++|.
T Consensus 187 ~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l--------~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 187 QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF--------FQLNYLQHLSLSRCY 258 (336)
T ss_dssp HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG--------GGCTTCCEEECTTCT
T ss_pred HHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH--------hCCCCCCEeeCCCCC
Confidence 33344557 89999999984 3322 233466799999999999994 43444444 467999999999997
Q ss_pred CCCchh--hhhhcCCCcEEEeecC
Q 038877 258 KAKDLT--WLVFAQNLKELRIDSC 279 (298)
Q Consensus 258 ~l~~l~--~l~~~~~L~~L~l~~c 279 (298)
.+.+.. .+..+++|++|++.+|
T Consensus 259 ~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 259 DIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCHHHHHHHhcCCCCCEEeccCc
Confidence 665532 4678999999999999
No 79
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.81 E-value=3.7e-20 Score=163.54 Aligned_cols=187 Identities=18% Similarity=0.093 Sum_probs=92.1
Q ss_pred cccCCCccEEEeecCCCcCCC-CCCCCCcccEEEecCCccc-ccCchHHhcCCC-------------ccEEEccCCcCCc
Q 038877 3 VEEWEGAKRISLMKTGIQSPS-EIPTCPRLVTFLLDGNWIE-EITDGFFRSMSS-------------LRVLSLRRNLALS 67 (298)
Q Consensus 3 ~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~-------------L~~L~l~~~~~~~ 67 (298)
..+.+.|+.|++++|.+..+| .+..+++|++|++++|.+. .+|.. ++.+.+ +++|++++| .++
T Consensus 7 ~~~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~ 84 (454)
T 1jl5_A 7 NVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPG-NGEQREMAVSRLRDCLDRQAHELELNNL-GLS 84 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTT-SCCCHHHHHHHHHHHHHHTCSEEECTTS-CCS
T ss_pred ccccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcc-cccchhcchhhhhhhhccCCCEEEecCC-ccc
Confidence 345677888888888887677 4578888888888888665 55554 555554 377777777 666
Q ss_pred cCCccccCccCCCeeeccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcccccccccc
Q 038877 68 KLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGS 147 (298)
Q Consensus 68 ~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 147 (298)
.+|.. .++|++|++++|.++.+|.. .++|++|++++| .+..++. + .++|++|++++|.+.+
T Consensus 85 ~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n-~l~~l~~--~--~~~L~~L~L~~n~l~~-------- 145 (454)
T 1jl5_A 85 SLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNN-NLKALSD--L--PPLLEYLGVSNNQLEK-------- 145 (454)
T ss_dssp CCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSS-CCSCCCS--C--CTTCCEEECCSSCCSS--------
T ss_pred cCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCC-ccCcccC--C--CCCCCEEECcCCCCCC--------
Confidence 66552 25677777777776666643 356666666666 2333332 1 1466666666666522
Q ss_pred ccccCchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcc
Q 038877 148 VLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLE 227 (298)
Q Consensus 148 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 227 (298)
++ .+..+++|+.++++++....++. ...+|++|++++|..... ..+..+++|+.|++++|.+.
T Consensus 146 --------lp-~~~~l~~L~~L~l~~N~l~~lp~------~~~~L~~L~L~~n~l~~l--~~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 146 --------LP-ELQNSSFLKIIDVDNNSLKKLPD------LPPSLEFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp --------CC-CCTTCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSSCCS
T ss_pred --------Cc-ccCCCCCCCEEECCCCcCcccCC------CcccccEEECcCCcCCcC--ccccCCCCCCEEECCCCcCC
Confidence 22 35566666666666655433221 123556666666644332 23555556666666555544
No 80
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=3.9e-20 Score=163.88 Aligned_cols=267 Identities=21% Similarity=0.130 Sum_probs=140.8
Q ss_pred CccEEEeecCCCcC-----CC-CCCCCCcccEEEecCCcccccC-ch----HHhcCCCccEEEccCCcCCcc-----CCc
Q 038877 8 GAKRISLMKTGIQS-----PS-EIPTCPRLVTFLLDGNWIEEIT-DG----FFRSMSSLRVLSLRRNLALSK-----LPS 71 (298)
Q Consensus 8 ~L~~L~l~~~~~~~-----~~-~~~~~~~L~~L~l~~~~~~~~~-~~----~~~~~~~L~~L~l~~~~~~~~-----~p~ 71 (298)
+|++|++++|.+.. ++ .+..+++|++|++++|.++... .. .....++|++|++++| .++. ++.
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~ 164 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLAS 164 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHH
Confidence 57777777776663 22 3356667777777777654211 11 1112345666666666 4442 233
Q ss_pred cccCccCCCeeeccCCccccc-----chhh-cCCCcccEEeccCCccCCC----CchhhhcCCCcccEEEeeccCCcccc
Q 038877 72 GISNLVSLHHLDLSWTRIRGL-----PQEL-KALEKLRYLSLEGTRHLSI----IPHQLISGFSKLEVLRLLWCGLWSRK 141 (298)
Q Consensus 72 ~~~~l~~L~~L~l~~~~~~~l-----~~~~-~~l~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~ 141 (298)
.+..+++|++|++++|.+... ...+ ...++|++|++++|..... ++.. +..+++|++|++++|.+....
T Consensus 165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI-VASKASLRELALGSNKLGDVG 243 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH-HHHCTTCCEEECCSSBCHHHH
T ss_pred HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH-HHhCCCccEEeccCCcCChHH
Confidence 444455566666665554421 1111 1233555555555522211 1221 344455555555554432100
Q ss_pred -----c-------c-ccccccc-----cCchhHHHhhcCCCCccEEEEEecCccchh--hhccc-cccccceeEEEEecc
Q 038877 142 -----E-------Q-EEGSVLY-----DDAEPLMKELLGLKHLNVLSWSLHSSLAVQ--KFLKY-PKLLSITQSVGVYFC 200 (298)
Q Consensus 142 -----~-------~-~~~~~~~-----~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~--~~~~~-~~~~~~L~~L~l~~~ 200 (298)
+ . ...++.. .+...++..+..+++|+.|+++++...... .+... ....+.|++|++++|
T Consensus 244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 0 0 0000000 011124556666778888888777653211 11111 112257888888888
Q ss_pred CCCCcc----cccccccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCc-----hh-hhhhcCC
Q 038877 201 QSPPLN----VLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKD-----LT-WLVFAQN 270 (298)
Q Consensus 201 ~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-----l~-~l~~~~~ 270 (298)
...... ...+..++.|+.|++++|.+.+.++..+.. .+. ...++|+.|++++| .+++ ++ .+..+++
T Consensus 324 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~--~l~-~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~ 399 (461)
T 1z7x_W 324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ--GLG-QPGSVLRVLWLADC-DVSDSSCSSLAATLLANHS 399 (461)
T ss_dssp CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH--HHT-STTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCC
T ss_pred CCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHH--HHc-CCCCceEEEECCCC-CCChhhHHHHHHHHHhCCC
Confidence 654432 223556789999999998776644433311 001 23679999999999 6774 33 3567899
Q ss_pred CcEEEeecCc
Q 038877 271 LKELRIDSCY 280 (298)
Q Consensus 271 L~~L~l~~c~ 280 (298)
|++|++++|+
T Consensus 400 L~~L~l~~N~ 409 (461)
T 1z7x_W 400 LRELDLSNNC 409 (461)
T ss_dssp CCEEECCSSS
T ss_pred ccEEECCCCC
Confidence 9999999984
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=1.2e-18 Score=145.02 Aligned_cols=199 Identities=17% Similarity=0.131 Sum_probs=162.2
Q ss_pred CCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCeeeccCCcccccchhhcCCCcccE
Q 038877 26 PTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRY 104 (298)
Q Consensus 26 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~ 104 (298)
..++++++++++++.+..+|.. + .+++++|++++| .+..+ +..+..+++|++|++++|.++.++.. +.+++|++
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~-~--~~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPD-L--PKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSC-C--CTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred cccCCccEEECCCCCCCcCCCC-C--CCCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence 5678899999999999988876 3 378999999999 77765 56789999999999999999987764 78999999
Q ss_pred EeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhcc
Q 038877 105 LSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLK 184 (298)
Q Consensus 105 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~ 184 (298)
|++++| .+..+|.. +.++++|+.|++++|.+.. ..+..+..+++|+.|+++++....+.. .
T Consensus 82 L~Ls~N-~l~~l~~~-~~~l~~L~~L~l~~N~l~~---------------l~~~~~~~l~~L~~L~L~~N~l~~~~~--~ 142 (290)
T 1p9a_G 82 LDLSHN-QLQSLPLL-GQTLPALTVLDVSFNRLTS---------------LPLGALRGLGELQELYLKGNELKTLPP--G 142 (290)
T ss_dssp EECCSS-CCSSCCCC-TTTCTTCCEEECCSSCCCC---------------CCSSTTTTCTTCCEEECTTSCCCCCCT--T
T ss_pred EECCCC-cCCcCchh-hccCCCCCEEECCCCcCcc---------------cCHHHHcCCCCCCEEECCCCCCCccCh--h
Confidence 999999 55678875 8899999999999999843 234567889999999999887654322 1
Q ss_pred ccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCC
Q 038877 185 YPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQ 257 (298)
Q Consensus 185 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 257 (298)
.....++|+.|++++|.........+..+++|+.|++++|.+..++...+ ..++|+.|++.+++
T Consensus 143 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~---------~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF---------GSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---------TTCCCSEEECCSCC
T ss_pred hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhc---------ccccCCeEEeCCCC
Confidence 22345789999999998776666668889999999999999887554433 46789999999874
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.78 E-value=6.6e-19 Score=148.08 Aligned_cols=226 Identities=12% Similarity=0.027 Sum_probs=168.1
Q ss_pred CCcccEEEecCCcccc--cCch-HHhcCCCccEEEccCCcCCc-cCCccc--cCccCCCeeeccCCcccc-cc----hhh
Q 038877 28 CPRLVTFLLDGNWIEE--ITDG-FFRSMSSLRVLSLRRNLALS-KLPSGI--SNLVSLHHLDLSWTRIRG-LP----QEL 96 (298)
Q Consensus 28 ~~~L~~L~l~~~~~~~--~~~~-~~~~~~~L~~L~l~~~~~~~-~~p~~~--~~l~~L~~L~l~~~~~~~-l~----~~~ 96 (298)
...++.+.+.++.++. +... .+..+++|++|++++| .+. ..|..+ +.+++|++|++++|.+.. .+ ..+
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 3457888888887651 1110 1334577999999999 665 556666 889999999999998884 22 334
Q ss_pred cCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHH--HhhcCCCCccEEEEEec
Q 038877 97 KALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLM--KELLGLKHLNVLSWSLH 174 (298)
Q Consensus 97 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~l~~L~~l~l~~~ 174 (298)
..+++|++|++++|.. ..++...++++++|++|++++|.+.+ ....+ ..+..+++|+.|++++|
T Consensus 142 ~~~~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~-------------~~~~~~~~~~~~l~~L~~L~Ls~N 207 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHS-PAFSCEQVRAFPALTSLDLSDNPGLG-------------ERGLMAALCPHKFPAIQNLALRNT 207 (310)
T ss_dssp TBCSCCCEEEEECCSS-CCCCTTSCCCCTTCCEEECCSCTTCH-------------HHHHHTTSCTTSSCCCCSCBCCSS
T ss_pred hhccCCCEEEeeCCCc-chhhHHHhccCCCCCEEECCCCCCcc-------------chhhhHHHhhhcCCCCCEEECCCC
Confidence 5799999999999955 45554458999999999999998732 22232 22367899999999999
Q ss_pred Cccchhhhccc-cccccceeEEEEeccCCCCccccccccc---ccccceecccCCcceeeecchhhhhccccccCCcccE
Q 038877 175 SSLAVQKFLKY-PKLLSITQSVGVYFCQSPPLNVLHLAYM---ENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNT 250 (298)
Q Consensus 175 ~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 250 (298)
....+...... ....++|++|++++|......+..+..+ ++|+.|++++|.+..++. .-+++|+.
T Consensus 208 ~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~-----------~~~~~L~~ 276 (310)
T 4glp_A 208 GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK-----------GLPAKLRV 276 (310)
T ss_dssp CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS-----------CCCSCCSC
T ss_pred CCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh-----------hhcCCCCE
Confidence 87654443222 2455789999999998766655444444 799999999999876421 23489999
Q ss_pred EeccCCCCCCchhhhhhcCCCcEEEeecCc
Q 038877 251 VSVDYCQKAKDLTWLVFAQNLKELRIDSCY 280 (298)
Q Consensus 251 L~l~~c~~l~~l~~l~~~~~L~~L~l~~c~ 280 (298)
|++++| .++.++.+..+++|++|++.+++
T Consensus 277 L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 277 LDLSSN-RLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp EECCSC-CCCSCCCTTSCCCCSCEECSSTT
T ss_pred EECCCC-cCCCCchhhhCCCccEEECcCCC
Confidence 999999 78887767889999999999874
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.78 E-value=8.3e-20 Score=158.26 Aligned_cols=262 Identities=16% Similarity=0.136 Sum_probs=181.5
Q ss_pred cccCCCccEEEeecCCCcC-----CC-CCCCCCcccEEEecCCccc----ccCchH------HhcCCCccEEEccCCcCC
Q 038877 3 VEEWEGAKRISLMKTGIQS-----PS-EIPTCPRLVTFLLDGNWIE----EITDGF------FRSMSSLRVLSLRRNLAL 66 (298)
Q Consensus 3 ~~~~~~L~~L~l~~~~~~~-----~~-~~~~~~~L~~L~l~~~~~~----~~~~~~------~~~~~~L~~L~l~~~~~~ 66 (298)
+..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+. .+|..+ +..+++|++|++++| .+
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l 106 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AF 106 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cC
Confidence 4568899999999998876 22 3578999999999998554 334331 368899999999999 67
Q ss_pred cc-----CCccccCccCCCeeeccCCcccc-----cchhhcCC---------CcccEEeccCCccC-CCCch--hhhcCC
Q 038877 67 SK-----LPSGISNLVSLHHLDLSWTRIRG-----LPQELKAL---------EKLRYLSLEGTRHL-SIIPH--QLISGF 124 (298)
Q Consensus 67 ~~-----~p~~~~~l~~L~~L~l~~~~~~~-----l~~~~~~l---------~~L~~L~l~~~~~~-~~~~~--~~~~~l 124 (298)
.. +|..+..+++|++|++++|.+.. ++..+..+ ++|++|++++|... ..++. ..+..+
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence 64 67788899999999999998862 33344445 89999999999544 23331 236789
Q ss_pred CcccEEEeeccCCccccccccccccccCchhHHH-hhcCCCCccEEEEEecCccc--hhhhccccccccceeEEEEeccC
Q 038877 125 SKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMK-ELLGLKHLNVLSWSLHSSLA--VQKFLKYPKLLSITQSVGVYFCQ 201 (298)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~l~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~ 201 (298)
++|+.|++++|.+.. .+...+.. .+..+++|+.|++++|.... ...++......++|++|++++|.
T Consensus 187 ~~L~~L~L~~n~l~~-----------~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRP-----------EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp TTCCEEECCSSCCCH-----------HHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred CCcCEEECcCCCCCH-----------hHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 999999999998842 00112344 78889999999999987632 13333344556788999999987
Q ss_pred CCCccc----ccc--cccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchh----hh-hhcCC
Q 038877 202 SPPLNV----LHL--AYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT----WL-VFAQN 270 (298)
Q Consensus 202 ~~~~~~----~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~----~l-~~~~~ 270 (298)
...... ..+ ..+++|+.|++++|.+...++..+.. .+ ...+++|+.|++++| .++... .+ ..++.
T Consensus 256 i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~--~l-~~~l~~L~~L~l~~N-~l~~~~~~~~~l~~~l~~ 331 (386)
T 2ca6_A 256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT--VI-DEKMPDLLFLELNGN-RFSEEDDVVDEIREVFST 331 (386)
T ss_dssp CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH--HH-HHHCTTCCEEECTTS-BSCTTSHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH--HH-HhcCCCceEEEccCC-cCCcchhHHHHHHHHhhh
Confidence 654422 234 33889999999999887632222210 00 034799999999998 455432 11 33566
Q ss_pred CcEEEeecCc
Q 038877 271 LKELRIDSCY 280 (298)
Q Consensus 271 L~~L~l~~c~ 280 (298)
++.+++..-.
T Consensus 332 ~~~~~l~~~d 341 (386)
T 2ca6_A 332 RGRGELDELD 341 (386)
T ss_dssp HTCCEECCCC
T ss_pred cCcchhhhcc
Confidence 6655555443
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=2.1e-18 Score=143.63 Aligned_cols=170 Identities=23% Similarity=0.298 Sum_probs=108.0
Q ss_pred ccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeee
Q 038877 4 EEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLD 83 (298)
Q Consensus 4 ~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 83 (298)
+++++|+.|++++|.+..++.+..+++|++|++++|.+..++. +..+++|++|++++| .+..+|. +..+++|++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEE
T ss_pred hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEE
Confidence 4456677777777777776666667777777777777766555 666777777777777 6665543 66677777777
Q ss_pred ccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCC
Q 038877 84 LSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGL 163 (298)
Q Consensus 84 l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 163 (298)
+++|.+..++ .+..+++|+.|++++|. +..++. ++.+++|+.|++++|.+.. ... +..+
T Consensus 119 L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N~l~~----------------~~~-l~~l 177 (291)
T 1h6t_A 119 LEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQISD----------------IVP-LAGL 177 (291)
T ss_dssp CTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCCC----------------CGG-GTTC
T ss_pred CCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcchh--hccCCCCCEEEccCCcccc----------------chh-hcCC
Confidence 7777766653 46667777777777763 344432 6677777777777776632 111 5666
Q ss_pred CCccEEEEEecCccchhhhccccccccceeEEEEeccCC
Q 038877 164 KHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQS 202 (298)
Q Consensus 164 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 202 (298)
++|+.|++++|....+.. ....++|+.|++++|..
T Consensus 178 ~~L~~L~L~~N~i~~l~~----l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 178 TKLQNLYLSKNHISDLRA----LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp TTCCEEECCSSCCCBCGG----GTTCTTCSEEEEEEEEE
T ss_pred CccCEEECCCCcCCCChh----hccCCCCCEEECcCCcc
Confidence 777777776665544332 12235556666666543
No 85
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.77 E-value=3.5e-20 Score=164.21 Aligned_cols=224 Identities=17% Similarity=0.180 Sum_probs=124.6
Q ss_pred cccCCCccEEEeecCCCcC-----CCC-CCCCCcccEEEecCCccccc-CchHHhcCC----CccEEEccCCcCCc----
Q 038877 3 VEEWEGAKRISLMKTGIQS-----PSE-IPTCPRLVTFLLDGNWIEEI-TDGFFRSMS----SLRVLSLRRNLALS---- 67 (298)
Q Consensus 3 ~~~~~~L~~L~l~~~~~~~-----~~~-~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~----~L~~L~l~~~~~~~---- 67 (298)
+..+++|++|++++|.+.. ++. +..+++|++|++++|.+++. +..++..++ +|++|++++| .++
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~ 102 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGC 102 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHH
Confidence 3456777788887777663 232 35667777777777776532 223234454 5777777777 555
Q ss_pred -cCCccccCccCCCeeeccCCccccc-c----hh-hcCCCcccEEeccCCccCCC----CchhhhcCCCcccEEEeeccC
Q 038877 68 -KLPSGISNLVSLHHLDLSWTRIRGL-P----QE-LKALEKLRYLSLEGTRHLSI----IPHQLISGFSKLEVLRLLWCG 136 (298)
Q Consensus 68 -~~p~~~~~l~~L~~L~l~~~~~~~l-~----~~-~~~l~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~ 136 (298)
.++..+..+++|++|++++|.+... + .. ....++|++|++++|..... ++. .+..+++|++|++++|.
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS-VLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH-HHHHCTTCCEEECCSSB
T ss_pred HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH-HHhhCCCCCEEECcCCC
Confidence 3355667777777777777766521 1 11 12244577777766633221 122 24455666666666665
Q ss_pred Ccccccc-------------ccccccc-----cCchhHHHhhcCCCCccEEEEEecCccchh--hhcc-ccccccceeEE
Q 038877 137 LWSRKEQ-------------EEGSVLY-----DDAEPLMKELLGLKHLNVLSWSLHSSLAVQ--KFLK-YPKLLSITQSV 195 (298)
Q Consensus 137 ~~~~~~~-------------~~~~~~~-----~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~--~~~~-~~~~~~~L~~L 195 (298)
+....-. ....+.. .....++..+..+++|+.|+++++...... .+.. .....+.|++|
T Consensus 182 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L 261 (461)
T 1z7x_W 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 261 (461)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEE
Confidence 4221000 0001111 111134566677788888888877653321 1111 11234677888
Q ss_pred EEeccCCCCcc----cccccccccccceecccCCcce
Q 038877 196 GVYFCQSPPLN----VLHLAYMENLQELVILNSDLEE 228 (298)
Q Consensus 196 ~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~ 228 (298)
++++|...... ...+..+++|+.|++++|.+..
T Consensus 262 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 298 (461)
T 1z7x_W 262 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298 (461)
T ss_dssp ECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred ECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCch
Confidence 88887654432 2235557788888888877654
No 86
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=7.9e-18 Score=153.39 Aligned_cols=218 Identities=19% Similarity=0.098 Sum_probs=135.2
Q ss_pred CCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccC
Q 038877 7 EGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSW 86 (298)
Q Consensus 7 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 86 (298)
++|+.|++++|.++.+|. .+++|++|++++|.++.+|. .+++|++|++++| .+..+|. .+.+|+.|++++
T Consensus 61 ~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L~~ 130 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSN-PLTHLPA---LPSGLCKLWIFG 130 (622)
T ss_dssp TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSC-CCCCCCC---CCTTCCEEECCS
T ss_pred CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCC-cCCCCCC---CCCCcCEEECCC
Confidence 567888888887777766 56778888888877776665 4677777777777 6666655 345666666666
Q ss_pred CcccccchhhcCCCcccEEeccCCccCCCCchh--hh--------------cCCCcccEEEeeccCCcccccc----ccc
Q 038877 87 TRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQ--LI--------------SGFSKLEVLRLLWCGLWSRKEQ----EEG 146 (298)
Q Consensus 87 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~--------------~~l~~L~~L~l~~~~~~~~~~~----~~~ 146 (298)
|.++.+|.. +++|++|++++|. +..+|.. .+ ..+++|+.|++++|.+..-... ...
T Consensus 131 N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L 206 (622)
T 3g06_A 131 NQLTSLPVL---PPGLQELSVSDNQ-LASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKL 206 (622)
T ss_dssp SCCSCCCCC---CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEE
T ss_pred CCCCcCCCC---CCCCCEEECcCCc-CCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCccchhhEE
Confidence 666655543 2556666666552 2222221 01 1226667777777666431000 000
Q ss_pred cccccCchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCc
Q 038877 147 SVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDL 226 (298)
Q Consensus 147 ~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 226 (298)
.+..+....++ ..+++|+.|++++|....++ ..+++|+.|++++|....... .+++|+.|++++|.+
T Consensus 207 ~L~~N~l~~l~---~~~~~L~~L~Ls~N~L~~lp------~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L 273 (622)
T 3g06_A 207 WAYNNRLTSLP---ALPSGLKELIVSGNRLTSLP------VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQL 273 (622)
T ss_dssp ECCSSCCSSCC---CCCTTCCEEECCSSCCSCCC------CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCC
T ss_pred ECcCCcccccC---CCCCCCCEEEccCCccCcCC------CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCC
Confidence 11111111111 12367888888887665433 345789999999997654332 568999999999988
Q ss_pred ceeeecchhhhhccccccCCcccEEeccCCCCCCc
Q 038877 227 EEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKD 261 (298)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 261 (298)
..++. .+ ..+++|+.|++++| .++.
T Consensus 274 ~~lp~-~l--------~~l~~L~~L~L~~N-~l~~ 298 (622)
T 3g06_A 274 TRLPE-SL--------IHLSSETTVNLEGN-PLSE 298 (622)
T ss_dssp CSCCG-GG--------GGSCTTCEEECCSC-CCCH
T ss_pred CcCCH-HH--------hhccccCEEEecCC-CCCC
Confidence 86542 33 57899999999999 4554
No 87
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=4.1e-18 Score=133.71 Aligned_cols=151 Identities=15% Similarity=0.217 Sum_probs=123.0
Q ss_pred ccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCcc-CCccccCccCCCee
Q 038877 4 EEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSK-LPSGISNLVSLHHL 82 (298)
Q Consensus 4 ~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L 82 (298)
+++++|+.|++++|.+..+|.+..+++|++|++++|.+..++. +..+++|++|++++| .+.. .|..++.+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGG--GTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchh--hhcCCCCCEEEeECC-ccCcccChhhcCCCCCCEE
Confidence 4577899999999999988877889999999999997766553 788999999999999 6664 57778889999999
Q ss_pred eccCCccc-ccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhc
Q 038877 83 DLSWTRIR-GLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELL 161 (298)
Q Consensus 83 ~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (298)
++++|.+. ..+..+..+++|++|++++|..++.++. +.++++|+.|++++|.+.. + ..+.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~----------------~-~~l~ 178 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD----------------Y-RGIE 178 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC----------------C-TTGG
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC----------------h-HHhc
Confidence 99999888 4667788999999999999864677764 8899999999999988842 2 2667
Q ss_pred CCCCccEEEEEecCc
Q 038877 162 GLKHLNVLSWSLHSS 176 (298)
Q Consensus 162 ~l~~L~~l~l~~~~~ 176 (298)
.+++|+.++++++..
T Consensus 179 ~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 179 DFPKLNQLYAFSQTI 193 (197)
T ss_dssp GCSSCCEEEECBC--
T ss_pred cCCCCCEEEeeCccc
Confidence 788888888887764
No 88
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.75 E-value=1.6e-18 Score=158.31 Aligned_cols=212 Identities=15% Similarity=0.115 Sum_probs=115.1
Q ss_pred HhcCCCccEEEccCCcCCcc--CCccccCccCCCeeeccCCccc-ccchhhcCCCcccEEeccC----------CccCCC
Q 038877 49 FRSMSSLRVLSLRRNLALSK--LPSGISNLVSLHHLDLSWTRIR-GLPQELKALEKLRYLSLEG----------TRHLSI 115 (298)
Q Consensus 49 ~~~~~~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~----------~~~~~~ 115 (298)
+..+++|++|++++| .+.. ++..+..+++|++|++.++... .++.....+++|++|++++ |..++.
T Consensus 289 ~~~~~~L~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~ 367 (592)
T 3ogk_B 289 FPFAAQIRKLDLLYA-LLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ 367 (592)
T ss_dssp GGGGGGCCEEEETTC-CCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH
T ss_pred HhhcCCCcEEecCCC-cCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCH
Confidence 444555555555555 3321 1122344555555555522111 3333344555666666653 322221
Q ss_pred C-chhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcC-CCCccEEEEEecC----ccch---hhhcccc
Q 038877 116 I-PHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLG-LKHLNVLSWSLHS----SLAV---QKFLKYP 186 (298)
Q Consensus 116 ~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~l~l~~~~----~~~~---~~~~~~~ 186 (298)
. ...+...+++|+.|+++.+.+ ....+..+.. +++|+.|++..+. .... ..+....
T Consensus 368 ~~~~~l~~~~~~L~~L~l~~~~l---------------~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~ 432 (592)
T 3ogk_B 368 RGLIALAQGCQELEYMAVYVSDI---------------TNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLL 432 (592)
T ss_dssp HHHHHHHHHCTTCSEEEEEESCC---------------CHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHH
T ss_pred HHHHHHHhhCccCeEEEeecCCc---------------cHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHH
Confidence 1 111133466666666655555 3344444443 6777777776422 1111 1122223
Q ss_pred ccccceeEEEEeccC--CCCccccccc-ccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCch-
Q 038877 187 KLLSITQSVGVYFCQ--SPPLNVLHLA-YMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDL- 262 (298)
Q Consensus 187 ~~~~~L~~L~l~~~~--~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l- 262 (298)
..+++|++|+++.|. ..+.....+. .+++|+.|++++|.+...++..+. .++++|+.|++++|. +++.
T Consensus 433 ~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-------~~~~~L~~L~l~~n~-l~~~~ 504 (592)
T 3ogk_B 433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFS-------RGCPNLQKLEMRGCC-FSERA 504 (592)
T ss_dssp HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHH-------TCCTTCCEEEEESCC-CBHHH
T ss_pred HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHH-------hcCcccCeeeccCCC-CcHHH
Confidence 446778888886543 2233333333 378889999988886553322221 578999999999996 7653
Q ss_pred -hh-hhhcCCCcEEEeecCcccccc
Q 038877 263 -TW-LVFAQNLKELRIDSCYDVEEI 285 (298)
Q Consensus 263 -~~-l~~~~~L~~L~l~~c~~l~~~ 285 (298)
+. ...+++|++|++++|. +++.
T Consensus 505 ~~~~~~~l~~L~~L~ls~n~-it~~ 528 (592)
T 3ogk_B 505 IAAAVTKLPSLRYLWVQGYR-ASMT 528 (592)
T ss_dssp HHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred HHHHHHhcCccCeeECcCCc-CCHH
Confidence 33 3579999999999997 5443
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=4e-18 Score=141.90 Aligned_cols=188 Identities=22% Similarity=0.216 Sum_probs=150.8
Q ss_pred EEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccc
Q 038877 12 ISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRG 91 (298)
Q Consensus 12 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~ 91 (298)
+.+..+.+.++.....+++|++|++++|.+..++. +..+++|++|++++| .+..++. +..+++|++|++++|.++.
T Consensus 29 ~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~ 104 (291)
T 1h6t_A 29 DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVKD 104 (291)
T ss_dssp HHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred HHhcCCCcccccchhhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcCCC
Confidence 34445555555455678899999999999887765 788999999999999 8887776 8899999999999999988
Q ss_pred cchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEE
Q 038877 92 LPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSW 171 (298)
Q Consensus 92 l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l 171 (298)
++. +..+++|++|++++|. +..++. +..+++|+.|++++|.+.. + ..+..+++|+.|++
T Consensus 105 ~~~-l~~l~~L~~L~L~~n~-i~~~~~--l~~l~~L~~L~l~~n~l~~----------------~-~~l~~l~~L~~L~L 163 (291)
T 1h6t_A 105 LSS-LKDLKKLKSLSLEHNG-ISDING--LVHLPQLESLYLGNNKITD----------------I-TVLSRLTKLDTLSL 163 (291)
T ss_dssp GGG-GTTCTTCCEEECTTSC-CCCCGG--GGGCTTCCEEECCSSCCCC----------------C-GGGGGCTTCSEEEC
T ss_pred Chh-hccCCCCCEEECCCCc-CCCChh--hcCCCCCCEEEccCCcCCc----------------c-hhhccCCCCCEEEc
Confidence 765 8899999999999994 455554 8899999999999998843 1 56778899999999
Q ss_pred EecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceee
Q 038877 172 SLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMK 230 (298)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 230 (298)
++|....... ...+++|+.|++++|...+. ..+..+++|+.|++++|.+...+
T Consensus 164 ~~N~l~~~~~----l~~l~~L~~L~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 164 EDNQISDIVP----LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CSSCCCCCGG----GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEEEEEECCC
T ss_pred cCCccccchh----hcCCCccCEEECCCCcCCCC--hhhccCCCCCEEECcCCcccCCc
Confidence 9887765443 34457889999999976553 35788999999999999876633
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.74 E-value=7.7e-19 Score=150.87 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=15.5
Q ss_pred ccEEEeecCCCcCCCC------CCCCC-cccEEEecCCccc
Q 038877 9 AKRISLMKTGIQSPSE------IPTCP-RLVTFLLDGNWIE 42 (298)
Q Consensus 9 L~~L~l~~~~~~~~~~------~~~~~-~L~~L~l~~~~~~ 42 (298)
|++|++++|.+.+.+. +..++ +|++|++++|.++
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 64 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG 64 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGG
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCC
Confidence 5555555554444321 13343 4555555555444
No 91
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=8.4e-18 Score=152.96 Aligned_cols=172 Identities=22% Similarity=0.273 Sum_probs=124.3
Q ss_pred cccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCee
Q 038877 3 VEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHL 82 (298)
Q Consensus 3 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 82 (298)
+.++++|+.|++++|.+..++.+..+++|+.|++++|.+..+++ +..+++|+.|++++| .+..+| .+..+++|++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEE
T ss_pred hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEE
Confidence 34567788888888888887777778888888888888776665 677888888888888 776665 57778888888
Q ss_pred eccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcC
Q 038877 83 DLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLG 162 (298)
Q Consensus 83 ~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (298)
++++|.+..++ .+..+++|+.|++++|. +..++. +..+++|+.|++++|.+.. ..+ +..
T Consensus 115 ~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~~---------------~~~--l~~ 173 (605)
T 1m9s_A 115 SLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQISD---------------IVP--LAG 173 (605)
T ss_dssp ECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GGSCTTCSEEECCSSCCCC---------------CGG--GTT
T ss_pred EecCCCCCCCc-cccCCCccCEEECCCCc-cCCchh--hcccCCCCEEECcCCcCCC---------------chh--hcc
Confidence 88888777764 47778888888888874 344433 7788888888888887743 112 677
Q ss_pred CCCccEEEEEecCccchhhhccccccccceeEEEEeccCCC
Q 038877 163 LKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSP 203 (298)
Q Consensus 163 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 203 (298)
+++|+.|++++|....+.. ...+++|+.|++.+|...
T Consensus 174 l~~L~~L~Ls~N~i~~l~~----l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 174 LTKLQNLYLSKNHISDLRA----LAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CTTCCEEECCSSCCCBCGG----GTTCTTCSEEECCSEEEE
T ss_pred CCCCCEEECcCCCCCCChH----HccCCCCCEEEccCCcCc
Confidence 7888888888776655432 233466777777777543
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.74 E-value=2.7e-17 Score=133.96 Aligned_cols=176 Identities=24% Similarity=0.264 Sum_probs=130.7
Q ss_pred CCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCeeecc
Q 038877 7 EGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHLDLS 85 (298)
Q Consensus 7 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~ 85 (298)
...+.++++++.+..+|... .++++.|++++|.+..++...+..+++|++|++++| .+..+ +..+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECC
Confidence 45788999999888887542 268999999999988777666889999999999999 77766 4457889999999999
Q ss_pred CCcccccc-hhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCC
Q 038877 86 WTRIRGLP-QELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLK 164 (298)
Q Consensus 86 ~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 164 (298)
+|.++.++ ..+..+++|++|++++| .+..++...+.++++|+.|++++|.+.. ..+..+..++
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---------------~~~~~~~~l~ 155 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQS---------------IPAGAFDKLT 155 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC---------------CCTTTTTTCT
T ss_pred CCcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCc---------------cCHHHcCcCc
Confidence 99988776 45788999999999998 4556666657889999999999998843 2233566777
Q ss_pred CccEEEEEecCccchhhhccccccccceeEEEEeccCC
Q 038877 165 HLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQS 202 (298)
Q Consensus 165 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 202 (298)
+|+.|++++|....+.. ......+.|+.|++.+|..
T Consensus 156 ~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 156 NLQTLSLSTNQLQSVPH--GAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp TCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSCCB
T ss_pred CCCEEECCCCcCCccCH--HHHhCCCCCCEEEeeCCce
Confidence 88888887775543221 1122234556666665543
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.74 E-value=2.5e-18 Score=144.54 Aligned_cols=224 Identities=14% Similarity=0.092 Sum_probs=129.6
Q ss_pred CccEEEeecCCCcC-----CCCCCCCCcccEEEecCCccc-ccCchHH--hcCCCccEEEccCCcCCcc-CC----cccc
Q 038877 8 GAKRISLMKTGIQS-----PSEIPTCPRLVTFLLDGNWIE-EITDGFF--RSMSSLRVLSLRRNLALSK-LP----SGIS 74 (298)
Q Consensus 8 ~L~~L~l~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~-~~~~~~~--~~~~~L~~L~l~~~~~~~~-~p----~~~~ 74 (298)
.++.+.+.++.+.. +.....+++|++|++++|.+. ..+.. + ..+++|++|++++| .+.. .+ ..+.
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPL-PLEATGLALSSLRLRNV-SWATGRSWLAELQQW 142 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCC-SSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTT
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhh-hhhccCCCCCEEEeecc-cccchhhhhHHHHhh
Confidence 45666666655543 111233455777777777665 33333 3 66777777777777 5542 22 2234
Q ss_pred CccCCCeeeccCCcccccc-hhhcCCCcccEEeccCCccCCC--Cc-hhhhcCCCcccEEEeeccCCccccccccccccc
Q 038877 75 NLVSLHHLDLSWTRIRGLP-QELKALEKLRYLSLEGTRHLSI--IP-HQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLY 150 (298)
Q Consensus 75 ~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~--~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 150 (298)
.+++|++|++++|.+..++ ..++.+++|++|++++|...+. ++ ...++.+++|++|++++|.+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~----------- 211 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET----------- 211 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-----------
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-----------
Confidence 5677777777777776544 4566777777777777743321 11 1113567777777777777632
Q ss_pred cCchhHHHh-hcCCCCccEEEEEecCccch-hhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcce
Q 038877 151 DDAEPLMKE-LLGLKHLNVLSWSLHSSLAV-QKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEE 228 (298)
Q Consensus 151 ~~~~~~~~~-l~~l~~L~~l~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 228 (298)
....+.. +..+++|+.|++++|..... +.........++|++|++++|..... +..+. ++|+.|++++|.+..
T Consensus 212 --l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~~--~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 212 --PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGLP--AKLRVLDLSSNRLNR 286 (310)
T ss_dssp --HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCCC--SCCSCEECCSCCCCS
T ss_pred --hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhhc--CCCCEEECCCCcCCC
Confidence 2222222 35667777777777665432 11111111125777788877765532 22232 688888888888776
Q ss_pred eeecchhhhhccccccCCcccEEeccCCCCCC
Q 038877 229 MKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAK 260 (298)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 260 (298)
++. . ..+++|+.|+++++ .++
T Consensus 287 ~~~--~--------~~l~~L~~L~L~~N-~l~ 307 (310)
T 4glp_A 287 APQ--P--------DELPEVDNLTLDGN-PFL 307 (310)
T ss_dssp CCC--T--------TSCCCCSCEECSST-TTS
T ss_pred Cch--h--------hhCCCccEEECcCC-CCC
Confidence 422 2 46788888888887 444
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.74 E-value=1.9e-17 Score=141.50 Aligned_cols=234 Identities=15% Similarity=0.140 Sum_probs=171.3
Q ss_pred ccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCeeeccCCccc-ccch-hhcCCCcccEEec
Q 038877 31 LVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHLDLSWTRIR-GLPQ-ELKALEKLRYLSL 107 (298)
Q Consensus 31 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~-~l~~-~~~~l~~L~~L~l 107 (298)
-++++.+++.++.+|.. + .+++++|++++| .++.+|. .|.++++|++|++++|.+. .++. .+..++++..+..
T Consensus 11 ~~~v~C~~~~Lt~iP~~-l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 11 NRVFLCQESKVTEIPSD-L--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp TTEEEEESTTCCSCCTT-C--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred CCEEEecCCCCCccCcC-c--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 36788888889899876 3 468999999999 8998876 6899999999999999875 5654 5788898877555
Q ss_pred cCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCc-cchhhhcccc
Q 038877 108 EGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSS-LAVQKFLKYP 186 (298)
Q Consensus 108 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~-~~~~~~~~~~ 186 (298)
.+++.+..++.+.+.++++|+.|++++|.+.. .....+.....+..+++..+.. ..+.. ....
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~---------------~~~~~~~~~~~l~~l~l~~~~~i~~l~~-~~f~ 150 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKH---------------LPDVHKIHSLQKVLLDIQDNINIHTIER-NSFV 150 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSS---------------CCCCTTCCBSSCEEEEEESCTTCCEECT-TSST
T ss_pred ccCCcccccCchhhhhcccccccccccccccc---------------CCchhhcccchhhhhhhccccccccccc-cchh
Confidence 44335677766668999999999999998843 1122333445677777765432 22211 1122
Q ss_pred ccccceeEEEEeccCCCCcccccccccccccceecccCCcce-eeecchhhhhccccccCCcccEEeccCCCCCCchhhh
Q 038877 187 KLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEE-MKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLTWL 265 (298)
Q Consensus 187 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l 265 (298)
.....++.|++++|........ ....++|+.|.+.+++..+ ++.+.+ ..+++|+.|+++++ .++.++.
T Consensus 151 ~~~~~l~~L~L~~N~i~~i~~~-~f~~~~L~~l~l~~~n~l~~i~~~~f--------~~l~~L~~LdLs~N-~l~~lp~- 219 (350)
T 4ay9_X 151 GLSFESVILWLNKNGIQEIHNS-AFNGTQLDELNLSDNNNLEELPNDVF--------HGASGPVILDISRT-RIHSLPS- 219 (350)
T ss_dssp TSBSSCEEEECCSSCCCEECTT-SSTTEEEEEEECTTCTTCCCCCTTTT--------TTEECCSEEECTTS-CCCCCCS-
T ss_pred hcchhhhhhccccccccCCChh-hccccchhHHhhccCCcccCCCHHHh--------ccCcccchhhcCCC-CcCccCh-
Confidence 3335678999999876544333 3345789999998765555 766666 67899999999999 8998863
Q ss_pred hhcCCCcEEEeecCcccccccccCcccccc
Q 038877 266 VFAQNLKELRIDSCYDVEEIISVDKLSDIS 295 (298)
Q Consensus 266 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 295 (298)
..+.+|++|.+.++..+++++..+....+.
T Consensus 220 ~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~ 249 (350)
T 4ay9_X 220 YGLENLKKLRARSTYNLKKLPTLEKLVALM 249 (350)
T ss_dssp SSCTTCCEEECTTCTTCCCCCCTTTCCSCC
T ss_pred hhhccchHhhhccCCCcCcCCCchhCcChh
Confidence 458899999999999999999776655443
No 95
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.73 E-value=2.9e-17 Score=150.88 Aligned_cols=245 Identities=17% Similarity=0.120 Sum_probs=129.1
Q ss_pred cCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCc---cCCccccCccCCCe
Q 038877 5 EWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALS---KLPSGISNLVSLHH 81 (298)
Q Consensus 5 ~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~p~~~~~l~~L~~ 81 (298)
.+..++.|++.++.+..++. ..+..|+.+.+..+.....+. ...+++|++++++.| .+. ..+..+..+.+|++
T Consensus 326 ~~~~L~~L~l~~~~~~~~~~-~~l~~L~~l~l~~n~~~~~~~--~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~ 401 (635)
T 4g8a_A 326 YNFGWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRN-GLSFKGCCSQSDFGTISLKY 401 (635)
T ss_dssp SCCCCSEEEEESCEESSCCC-CBCTTCCEEEEESCCSCCBCC--CCBCTTCCEEECCSS-CCBEEEECCHHHHSCSCCCE
T ss_pred cchhhhhhhcccccccCcCc-ccchhhhhcccccccCCCCcc--cccccccccchhhcc-ccccccccccchhhhhhhhh
Confidence 34455555555554444322 123444455555444332222 234566666666666 443 22334445566666
Q ss_pred eeccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhc
Q 038877 82 LDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELL 161 (298)
Q Consensus 82 L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (298)
+++..+....++..+..+++|+.+++.++......+...+..+++++.++++.|.+. ...+..+.
T Consensus 402 L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~---------------~~~~~~~~ 466 (635)
T 4g8a_A 402 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR---------------VAFNGIFN 466 (635)
T ss_dssp EECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCE---------------ECCTTTTT
T ss_pred hhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccc---------------cccccccc
Confidence 666666555555555566666666666654444444334566666666666666652 23334455
Q ss_pred CCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccc
Q 038877 162 GLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLF 241 (298)
Q Consensus 162 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 241 (298)
.++.++.++++++.... ...+......++|+.|++++|......+..+.++++|++|++++|++..++...+
T Consensus 467 ~~~~L~~L~Ls~N~~~~-~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~------- 538 (635)
T 4g8a_A 467 GLSSLEVLKMAGNSFQE-NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY------- 538 (635)
T ss_dssp TCTTCCEEECTTCEEGG-GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGG-------
T ss_pred cchhhhhhhhhhccccc-ccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHH-------
Confidence 55666666665543211 0111223334556666666665555555556666666666666666655444444
Q ss_pred cccCCcccEEeccCCCCCCchh--hhhhc-CCCcEEEeec
Q 038877 242 RSGFRSLNTVSVDYCQKAKDLT--WLVFA-QNLKELRIDS 278 (298)
Q Consensus 242 ~~~~~~L~~L~l~~c~~l~~l~--~l~~~-~~L~~L~l~~ 278 (298)
..+++|+.|++++| .++.++ .+..+ ++|++|++.+
T Consensus 539 -~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 539 -KCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp -TTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTT
T ss_pred -hCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeC
Confidence 45666666666666 455442 23334 4566666654
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=2.1e-18 Score=156.93 Aligned_cols=192 Identities=22% Similarity=0.223 Sum_probs=155.3
Q ss_pred ccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCc
Q 038877 9 AKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTR 88 (298)
Q Consensus 9 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 88 (298)
+..+.+..+.+.++.....+++|+.|++++|.+..++. +..+++|+.|++++| .+..+++ +..+++|+.|+|++|.
T Consensus 23 l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENK 98 (605)
T ss_dssp HHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSC
T ss_pred HHHHhccCCCcccccchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCC
Confidence 44445555666665556778999999999999988764 889999999999999 8887776 8899999999999999
Q ss_pred ccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccE
Q 038877 89 IRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNV 168 (298)
Q Consensus 89 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 168 (298)
+..++ .+..+++|+.|++++|. +..++. +..+++|+.|++++|.+.. + ..+..+++|+.
T Consensus 99 l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~~----------------l-~~l~~l~~L~~ 157 (605)
T 1m9s_A 99 IKDLS-SLKDLKKLKSLSLEHNG-ISDING--LVHLPQLESLYLGNNKITD----------------I-TVLSRLTKLDT 157 (605)
T ss_dssp CCCCT-TSTTCTTCCEEECTTSC-CCCCGG--GGGCTTCSEEECCSSCCCC----------------C-GGGGSCTTCSE
T ss_pred CCCCh-hhccCCCCCEEEecCCC-CCCCcc--ccCCCccCEEECCCCccCC----------------c-hhhcccCCCCE
Confidence 98876 68899999999999994 455554 8999999999999999843 2 56788999999
Q ss_pred EEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeee
Q 038877 169 LSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKI 231 (298)
Q Consensus 169 l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 231 (298)
|+++.|....... ...+++|+.|++++|..... ..+..+++|+.|++++|.+...++
T Consensus 158 L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 158 LSLEDNQISDIVP----LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp EECCSSCCCCCGG----GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred EECcCCcCCCchh----hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence 9999887655433 34457889999999976553 468889999999999998766433
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.73 E-value=4.3e-17 Score=132.79 Aligned_cols=154 Identities=25% Similarity=0.334 Sum_probs=132.4
Q ss_pred CCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCC-ccccCccCCCeee
Q 038877 7 EGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLP-SGISNLVSLHHLD 83 (298)
Q Consensus 7 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~ 83 (298)
++++.|++++|.+..++ .+..+++|++|++++|.+..+++..+..+++|++|++++| .+..+| ..+..+++|++|+
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cccccChhHhcccCCCCEEE
Confidence 57999999999999865 3588999999999999999877766899999999999999 787775 4678999999999
Q ss_pred ccCCcccccchh-hcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcC
Q 038877 84 LSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLG 162 (298)
Q Consensus 84 l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (298)
+++|.++.++.. +..+++|++|++++| .+..++...++++++|+.|++++|.+.. ..+..+..
T Consensus 114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~---------------~~~~~~~~ 177 (251)
T 3m19_A 114 LGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQS---------------VPHGAFDR 177 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC---------------CCTTTTTT
T ss_pred cCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCc---------------cCHHHHhC
Confidence 999999988754 688999999999999 4566676558999999999999999843 33456788
Q ss_pred CCCccEEEEEecCcc
Q 038877 163 LKHLNVLSWSLHSSL 177 (298)
Q Consensus 163 l~~L~~l~l~~~~~~ 177 (298)
+++|+.+++++|...
T Consensus 178 l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 178 LGKLQTITLFGNQFD 192 (251)
T ss_dssp CTTCCEEECCSCCBC
T ss_pred CCCCCEEEeeCCcee
Confidence 999999999998764
No 98
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.73 E-value=4.7e-18 Score=155.16 Aligned_cols=252 Identities=13% Similarity=0.067 Sum_probs=131.4
Q ss_pred cCCCccEEEeecCCCcCCC-----CC-CCCCcccEEEecCCcccccC----chHHhcCCCccEEEccCCcCCccCCcccc
Q 038877 5 EWEGAKRISLMKTGIQSPS-----EI-PTCPRLVTFLLDGNWIEEIT----DGFFRSMSSLRVLSLRRNLALSKLPSGIS 74 (298)
Q Consensus 5 ~~~~L~~L~l~~~~~~~~~-----~~-~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~p~~~~ 74 (298)
+|++|++|++++|.+.+.. .+ ..+++|++|+++++.++.+. ...+..+++|++|++++| .+..+|..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHh
Confidence 5788888888888765422 11 45677777777777664111 223566777777777777 5555555555
Q ss_pred CccCCCeeecc---------------------------CCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcc
Q 038877 75 NLVSLHHLDLS---------------------------WTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKL 127 (298)
Q Consensus 75 ~l~~L~~L~l~---------------------------~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L 127 (298)
.+++|++|+++ ++....+|..+..+++|++|++++|..........+.++++|
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 55555555554 322234455556666777777777642211111224666666
Q ss_pred cEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEe----------cCccchhhhcccccc---------
Q 038877 128 EVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSL----------HSSLAVQKFLKYPKL--------- 188 (298)
Q Consensus 128 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~----------~~~~~~~~~~~~~~~--------- 188 (298)
+.|++.. .+. ...+......+++|+.|+++. +.......+......
T Consensus 321 ~~L~L~~-~~~--------------~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l 385 (592)
T 3ogk_B 321 EVLETRN-VIG--------------DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV 385 (592)
T ss_dssp CEEEEEG-GGH--------------HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE
T ss_pred CEEeccC-ccC--------------HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe
Confidence 6666662 221 112222223444455555542 211111111111222
Q ss_pred ----------------ccceeEEEEeccC----CCCc-----ccccccccccccceecccCCc--ceeeecchhhhhccc
Q 038877 189 ----------------LSITQSVGVYFCQ----SPPL-----NVLHLAYMENLQELVILNSDL--EEMKIDSAEEVKKLF 241 (298)
Q Consensus 189 ----------------~~~L~~L~l~~~~----~~~~-----~~~~l~~l~~L~~L~l~~~~~--~~~~~~~~~~~~~~~ 241 (298)
+++|+.|++.++. ..+. ....+.++++|+.|+++.|.. ....+..+.
T Consensus 386 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~------ 459 (592)
T 3ogk_B 386 YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG------ 459 (592)
T ss_dssp EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH------
T ss_pred ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH------
Confidence 3445555554221 1111 000133355566665544331 111222221
Q ss_pred cccCCcccEEeccCCCCCCch--h-hhhhcCCCcEEEeecCc
Q 038877 242 RSGFRSLNTVSVDYCQKAKDL--T-WLVFAQNLKELRIDSCY 280 (298)
Q Consensus 242 ~~~~~~L~~L~l~~c~~l~~l--~-~l~~~~~L~~L~l~~c~ 280 (298)
..+++|+.|++++| .+++. + ++..+++|++|+|.+|+
T Consensus 460 -~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 460 -QYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp -HSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred -HhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCC
Confidence 35788999999988 57653 2 34678999999999997
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=6.4e-17 Score=132.60 Aligned_cols=148 Identities=26% Similarity=0.295 Sum_probs=87.5
Q ss_pred cccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCee
Q 038877 3 VEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHL 82 (298)
Q Consensus 3 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 82 (298)
+.++++|++|++++|.+..++.+..+++|++|++++|.+..+++ +..+++|++|++++| .+..+|.... .+|++|
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N-~l~~l~~~~~--~~L~~L 111 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN-RLKNLNGIPS--ACLSRL 111 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS-CCSCCTTCCC--SSCCEE
T ss_pred hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC-ccCCcCcccc--CcccEE
Confidence 34556666666666666666655666666666666666665554 556666666666666 5555544222 666666
Q ss_pred eccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcC
Q 038877 83 DLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLG 162 (298)
Q Consensus 83 ~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (298)
++++|.++.++ .+..+++|++|++++|. ++.++. ++.+++|+.|++++|.+.. . ..+..
T Consensus 112 ~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~~---------------~--~~l~~ 170 (263)
T 1xeu_A 112 FLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEITN---------------T--GGLTR 170 (263)
T ss_dssp ECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCCB---------------C--TTSTT
T ss_pred EccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCcc---------------h--HHhcc
Confidence 66666666554 35566666666666663 344442 5666666666666666632 1 44555
Q ss_pred CCCccEEEEEecCc
Q 038877 163 LKHLNVLSWSLHSS 176 (298)
Q Consensus 163 l~~L~~l~l~~~~~ 176 (298)
+++|+.++++++..
T Consensus 171 l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 171 LKKVNWIDLTGQKC 184 (263)
T ss_dssp CCCCCEEEEEEEEE
T ss_pred CCCCCEEeCCCCcc
Confidence 66666666665544
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.69 E-value=1.8e-16 Score=126.38 Aligned_cols=156 Identities=20% Similarity=0.265 Sum_probs=126.2
Q ss_pred cccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCe
Q 038877 3 VEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHH 81 (298)
Q Consensus 3 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~ 81 (298)
-+.|. -+.++++++.++.+|... .+++++|++++|.+..++...+..+++|++|++++| .+..+ |..+..+++|++
T Consensus 8 ~C~C~-~~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~ 84 (220)
T 2v9t_B 8 ACTCS-NNIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNS 84 (220)
T ss_dssp TSEEE-TTEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCE
T ss_pred CCEEC-CCEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCE
Confidence 34443 367888899888887532 278999999999999888766889999999999999 77766 778999999999
Q ss_pred eeccCCcccccchh-hcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhh
Q 038877 82 LDLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKEL 160 (298)
Q Consensus 82 L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 160 (298)
|++++|.++.+|.. +..+++|++|++++|. +..++...+.++++|+.|++++|.+.. .....+
T Consensus 85 L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~---------------~~~~~~ 148 (220)
T 2v9t_B 85 LVLYGNKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQT---------------IAKGTF 148 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSC---------------CCTTTT
T ss_pred EECCCCcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCE---------------ECHHHH
Confidence 99999999988865 6889999999999995 455544458999999999999999843 233457
Q ss_pred cCCCCccEEEEEecCcc
Q 038877 161 LGLKHLNVLSWSLHSSL 177 (298)
Q Consensus 161 ~~l~~L~~l~l~~~~~~ 177 (298)
..+++|+.+++++|...
T Consensus 149 ~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 149 SPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTCTTCCEEECCSSCEE
T ss_pred hCCCCCCEEEeCCCCcC
Confidence 77888999999887653
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=1.5e-17 Score=136.44 Aligned_cols=167 Identities=19% Similarity=0.171 Sum_probs=117.5
Q ss_pred CCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeecc
Q 038877 6 WEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLS 85 (298)
Q Consensus 6 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 85 (298)
+.++..+++.++.+.+++.+..+++|++|++++|.+..++. +..+++|++|++++| .+..++. +..+++|++|+++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchH--HhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECC
Confidence 44556666777777776666778888888888888777763 777888888888888 7777766 7788888888888
Q ss_pred CCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCC
Q 038877 86 WTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKH 165 (298)
Q Consensus 86 ~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 165 (298)
+|.++.++.... ++|+.|++++| .+..++. ++++++|+.|++++|.+.. + ..+..+++
T Consensus 94 ~N~l~~l~~~~~--~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~~----------------~-~~l~~l~~ 151 (263)
T 1xeu_A 94 RNRLKNLNGIPS--ACLSRLFLDNN-ELRDTDS--LIHLKNLEILSIRNNKLKS----------------I-VMLGFLSK 151 (263)
T ss_dssp SSCCSCCTTCCC--SSCCEEECCSS-CCSBSGG--GTTCTTCCEEECTTSCCCB----------------C-GGGGGCTT
T ss_pred CCccCCcCcccc--CcccEEEccCC-ccCCChh--hcCcccccEEECCCCcCCC----------------C-hHHccCCC
Confidence 888877765433 78888888887 3445543 7788888888888887743 1 24666777
Q ss_pred ccEEEEEecCccchhhhccccccccceeEEEEeccCC
Q 038877 166 LNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQS 202 (298)
Q Consensus 166 L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 202 (298)
|+.|++++|...... .....+.|+.|++++|..
T Consensus 152 L~~L~L~~N~i~~~~----~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 152 LEVLDLHGNEITNTG----GLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp CCEEECTTSCCCBCT----TSTTCCCCCEEEEEEEEE
T ss_pred CCEEECCCCcCcchH----HhccCCCCCEEeCCCCcc
Confidence 777777777655441 223345566666666653
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.69 E-value=1.4e-16 Score=126.02 Aligned_cols=149 Identities=24% Similarity=0.306 Sum_probs=115.4
Q ss_pred ccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCeeeccCC
Q 038877 9 AKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHLDLSWT 87 (298)
Q Consensus 9 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~ 87 (298)
-+.++..++.+..+|.. -.++|++|++++|.+..++...+..+++|++|++++| .+..+|. .+..+++|++|++++|
T Consensus 9 ~~~v~c~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TTEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC
Confidence 35778888888877643 2568999999999988877766888999999999999 7777755 4688999999999999
Q ss_pred cccccchh-hcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCc
Q 038877 88 RIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHL 166 (298)
Q Consensus 88 ~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 166 (298)
.++.++.. +..+++|++|++++|. +..++...+.++++|+.|++++|.+.. .....+..+++|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~---------------~~~~~~~~l~~L 150 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKS---------------VPDGVFDRLTSL 150 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSC---------------CCTTTTTTCTTC
T ss_pred cCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccce---------------eCHHHhccCCCc
Confidence 88877654 6889999999999984 456665557889999999999988732 222335667777
Q ss_pred cEEEEEecC
Q 038877 167 NVLSWSLHS 175 (298)
Q Consensus 167 ~~l~l~~~~ 175 (298)
+.+++++|.
T Consensus 151 ~~L~l~~N~ 159 (208)
T 2o6s_A 151 QYIWLHDNP 159 (208)
T ss_dssp CEEECCSCC
T ss_pred cEEEecCCC
Confidence 777776653
No 103
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.68 E-value=3.9e-17 Score=140.20 Aligned_cols=253 Identities=15% Similarity=0.111 Sum_probs=177.3
Q ss_pred EEEeecCCCcC-CCCC-CCCCcccEEEecCCcccccCc----hHHhcCC-CccEEEccCCcCCccC-CccccCc-----c
Q 038877 11 RISLMKTGIQS-PSEI-PTCPRLVTFLLDGNWIEEITD----GFFRSMS-SLRVLSLRRNLALSKL-PSGISNL-----V 77 (298)
Q Consensus 11 ~L~l~~~~~~~-~~~~-~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~-p~~~~~l-----~ 77 (298)
.+.++++.+++ +|.+ ...++|++|++++|.++..+. ..+..++ +|++|++++| .++.. +..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCC
Confidence 46778888887 4555 555669999999999987665 5588888 8999999999 77754 4455554 8
Q ss_pred CCCeeeccCCcccccc-h----hhcCC-CcccEEeccCCccCCCCchh---hhcC-CCcccEEEeeccCCcccccccccc
Q 038877 78 SLHHLDLSWTRIRGLP-Q----ELKAL-EKLRYLSLEGTRHLSIIPHQ---LISG-FSKLEVLRLLWCGLWSRKEQEEGS 147 (298)
Q Consensus 78 ~L~~L~l~~~~~~~l~-~----~~~~l-~~L~~L~l~~~~~~~~~~~~---~~~~-l~~L~~L~l~~~~~~~~~~~~~~~ 147 (298)
+|++|++++|.++..+ . .+... ++|++|++++|......+.. .+.. .++|++|++++|.+..
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-------- 152 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI-------- 152 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG--------
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH--------
Confidence 9999999999988443 2 35555 89999999999653333322 1334 3699999999998843
Q ss_pred ccccCchhHHHhhcCCC-CccEEEEEecCccchh--hhccccccc-cceeEEEEeccCCCCcccc----cccc-cccccc
Q 038877 148 VLYDDAEPLMKELLGLK-HLNVLSWSLHSSLAVQ--KFLKYPKLL-SITQSVGVYFCQSPPLNVL----HLAY-MENLQE 218 (298)
Q Consensus 148 ~~~~~~~~~~~~l~~l~-~L~~l~l~~~~~~~~~--~~~~~~~~~-~~L~~L~l~~~~~~~~~~~----~l~~-l~~L~~ 218 (298)
.+...+...+..++ +|+.|++++|...... .+....... +.|+.|++++|...+.... .+.. .++|+.
T Consensus 153 ---~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~ 229 (362)
T 3goz_A 153 ---KSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS 229 (362)
T ss_dssp ---SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCE
T ss_pred ---HHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceE
Confidence 22345667777776 9999999998764322 222222223 5899999999976443222 2444 459999
Q ss_pred eecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCch-----h----hhhhcCCCcEEEeecCc
Q 038877 219 LVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDL-----T----WLVFAQNLKELRIDSCY 280 (298)
Q Consensus 219 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-----~----~l~~~~~L~~L~l~~c~ 280 (298)
|++++|.+...++..+.. ....+++|+.|++++| .+..+ . .+..+++|++|++++++
T Consensus 230 L~Ls~N~l~~~~~~~l~~----~~~~l~~L~~L~L~~n-~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 230 LNLCLNCLHGPSLENLKL----LKDSLKHLQTVYLDYD-IVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp EECCSSCCCCCCHHHHHH----TTTTTTTCSEEEEEHH-HHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred EECcCCCCCcHHHHHHHH----HHhcCCCccEEEeccC-CccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 999999987755433311 1156789999999999 42222 1 12457788899999875
No 104
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.68 E-value=2e-17 Score=151.02 Aligned_cols=35 Identities=14% Similarity=0.215 Sum_probs=21.6
Q ss_pred cCCcccEEeccCCCCCCch--hhhh-hcCCCcEEEeecCc
Q 038877 244 GFRSLNTVSVDYCQKAKDL--TWLV-FAQNLKELRIDSCY 280 (298)
Q Consensus 244 ~~~~L~~L~l~~c~~l~~l--~~l~-~~~~L~~L~l~~c~ 280 (298)
.+++|+.|++++ .+++. ..+. .+++|++|++.+|.
T Consensus 430 ~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~ 467 (594)
T 2p1m_B 430 HCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG 467 (594)
T ss_dssp HCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC
T ss_pred hCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC
Confidence 456777777755 44443 2233 37778888887775
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.67 E-value=6e-16 Score=139.46 Aligned_cols=179 Identities=19% Similarity=0.221 Sum_probs=140.2
Q ss_pred CCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccC
Q 038877 7 EGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSW 86 (298)
Q Consensus 7 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 86 (298)
.+|+.|++++|.++++|... +++|++|++++|.++.+| ..+++|++|++++| .++.+|. +.. +|++|++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCC
Confidence 48999999999999887532 488999999999998887 34789999999999 8888887 654 999999999
Q ss_pred CcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCc
Q 038877 87 TRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHL 166 (298)
Q Consensus 87 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 166 (298)
|.++.+|. .+++|+.|++++|. +..+|. .+++|+.|++++|.+.. ++. +. ++|
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N~L~~----------------lp~-l~--~~L 182 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADNNQ-LTMLPE----LPTSLEVLSVRNNQLTF----------------LPE-LP--ESL 182 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSC----------------CCC-CC--TTC
T ss_pred CcCCCCCC---cCccccEEeCCCCc-cCcCCC----cCCCcCEEECCCCCCCC----------------cch-hh--CCC
Confidence 99998887 68999999999994 455665 57899999999998843 333 33 889
Q ss_pred cEEEEEecCccchhhhccccccccce-------eEEEEeccCCCCcccccccccccccceecccCCcce
Q 038877 167 NVLSWSLHSSLAVQKFLKYPKLLSIT-------QSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEE 228 (298)
Q Consensus 167 ~~l~l~~~~~~~~~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 228 (298)
+.|++++|....++. ...+| +.|++++|..... +..+..+++|+.|++++|.+..
T Consensus 183 ~~L~Ls~N~L~~lp~------~~~~L~~~~~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 183 EALDVSTNLLESLPA------VPVRNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp CEEECCSSCCSSCCC------CC--------CCEEEECCSSCCCCC-CGGGGGSCTTEEEECCSSSCCH
T ss_pred CEEECcCCCCCchhh------HHHhhhcccccceEEecCCCcceec-CHHHhcCCCCCEEEeeCCcCCC
Confidence 999999887664443 11255 8888888876543 3345568888888888888776
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.67 E-value=8.1e-16 Score=123.43 Aligned_cols=151 Identities=23% Similarity=0.188 Sum_probs=111.9
Q ss_pred CccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCeeeccC
Q 038877 8 GAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHLDLSW 86 (298)
Q Consensus 8 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~ 86 (298)
.-+.++.+++.+..+|... .++|++|++++|.+..+++..+..+++|++|++++| .+..+|. .+..+++|++|++++
T Consensus 20 s~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCC
Confidence 3456777777777776532 378888888888887665555778888888888888 7777654 467788888888888
Q ss_pred Ccccccchh-hcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCC
Q 038877 87 TRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKH 165 (298)
Q Consensus 87 ~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 165 (298)
|.++.++.. +..+++|++|++++| .+..+|.. +.++++|+.|++++|.+.. .....+..+++
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~---------------~~~~~~~~l~~ 160 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLKS---------------IPHGAFDRLSS 160 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSCCCC---------------CCTTTTTTCTT
T ss_pred CcCCccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCcCCc---------------cCHHHHhCCCC
Confidence 888876643 677888888888888 45577765 6888888888888887743 22355677888
Q ss_pred ccEEEEEecCcc
Q 038877 166 LNVLSWSLHSSL 177 (298)
Q Consensus 166 L~~l~l~~~~~~ 177 (298)
|+.+++.+|...
T Consensus 161 L~~L~l~~N~~~ 172 (229)
T 3e6j_A 161 LTHAYLFGNPWD 172 (229)
T ss_dssp CCEEECTTSCBC
T ss_pred CCEEEeeCCCcc
Confidence 888888887764
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.67 E-value=5.7e-16 Score=123.52 Aligned_cols=157 Identities=16% Similarity=0.209 Sum_probs=126.4
Q ss_pred CcccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCccccc-CchHHhcCCCccEEEccCCcCCccCCc-cccCccCC
Q 038877 2 KVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEI-TDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSL 79 (298)
Q Consensus 2 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L 79 (298)
..+.|. -+.++++++.++.+|.. -...+++|++++|.+..+ +..++..+++|++|++++| .+..++. .+..+++|
T Consensus 7 ~~C~C~-~~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L 83 (220)
T 2v70_A 7 EKCRCE-GTTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGV 83 (220)
T ss_dssp TTCEEE-TTEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTC
T ss_pred CCCEEC-CCEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCC
Confidence 344443 36899999999988753 245678999999999866 4445889999999999999 7887754 78999999
Q ss_pred CeeeccCCcccccch-hhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHH
Q 038877 80 HHLDLSWTRIRGLPQ-ELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMK 158 (298)
Q Consensus 80 ~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (298)
++|++++|.++.++. .+..+++|++|++++|......+. .+.++++|+.|++++|.+.. ..+.
T Consensus 84 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~---------------~~~~ 147 (220)
T 2v70_A 84 NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND-SFIGLSSVRLLSLYDNQITT---------------VAPG 147 (220)
T ss_dssp CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT-SSTTCTTCSEEECTTSCCCC---------------BCTT
T ss_pred CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHh-HcCCCccCCEEECCCCcCCE---------------ECHH
Confidence 999999999997764 588999999999999955444344 48999999999999999843 3456
Q ss_pred hhcCCCCccEEEEEecCcc
Q 038877 159 ELLGLKHLNVLSWSLHSSL 177 (298)
Q Consensus 159 ~l~~l~~L~~l~l~~~~~~ 177 (298)
.+..+++|+.+++++|...
T Consensus 148 ~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 148 AFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTTTCTTCCEEECCSCCEE
T ss_pred HhcCCCCCCEEEecCcCCc
Confidence 7788899999999988764
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=6.3e-16 Score=121.15 Aligned_cols=132 Identities=19% Similarity=0.241 Sum_probs=113.2
Q ss_pred CCcccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccc-cCchHHhcCCCccEEEccCCcCCc-cCCccccCccC
Q 038877 1 PKVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEE-ITDGFFRSMSSLRVLSLRRNLALS-KLPSGISNLVS 78 (298)
Q Consensus 1 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~-~~p~~~~~l~~ 78 (298)
|.+..+++|++|++++|.+..++.+..+++|++|++++|.+.. .+.. +..+++|++|++++| .+. ..|..++.+++
T Consensus 60 ~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~Ls~n-~i~~~~~~~l~~l~~ 137 (197)
T 4ezg_A 60 TGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISHS-AHDDSILTKINTLPK 137 (197)
T ss_dssp TTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEEECCSS-BCBGGGHHHHTTCSS
T ss_pred HHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEEEecCC-ccCcHhHHHHhhCCC
Confidence 3467899999999999988888888999999999999999884 4444 889999999999999 666 46778899999
Q ss_pred CCeeeccCCc-ccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCc
Q 038877 79 LHHLDLSWTR-IRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLW 138 (298)
Q Consensus 79 L~~L~l~~~~-~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 138 (298)
|++|++++|. ++.++ .+..+++|+.|++++|. +..++. +..+++|+.|++++|.+.
T Consensus 138 L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~--l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 138 VNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRG--IEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTT--GGGCSSCCEEEECBC---
T ss_pred CCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChHH--hccCCCCCEEEeeCcccC
Confidence 9999999997 88887 68999999999999994 555663 899999999999999874
No 109
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.64 E-value=3.1e-17 Score=149.73 Aligned_cols=266 Identities=14% Similarity=0.124 Sum_probs=132.8
Q ss_pred cCCCccEEEeecCC--CcC--CCCC-CCCCcccEEEecCC-cccccCchHHhcCCCccEEEccCCc--------------
Q 038877 5 EWEGAKRISLMKTG--IQS--PSEI-PTCPRLVTFLLDGN-WIEEITDGFFRSMSSLRVLSLRRNL-------------- 64 (298)
Q Consensus 5 ~~~~L~~L~l~~~~--~~~--~~~~-~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~-------------- 64 (298)
.+++|+.|+++++. +.. ++.+ ..+++|++|++++| .++.++.. +..+++|+.|+++.+.
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccccCccchhhHHHHHHH
Confidence 67799999999886 221 2222 45788899998887 33344333 5666667766654331
Q ss_pred ----------------CCccCCccccCccCCCeeeccCCccc--ccchhhcCCCcccEEeccCCccCCCCchhhhcCCCc
Q 038877 65 ----------------ALSKLPSGISNLVSLHHLDLSWTRIR--GLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSK 126 (298)
Q Consensus 65 ----------------~~~~~p~~~~~l~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~ 126 (298)
....++..+..+++|++|++++|.++ .+...+..+++|+.|++.+| ........+...+++
T Consensus 261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD 339 (594)
T ss_dssp HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence 01123333345677888888777655 23344566777777777766 211111112334666
Q ss_pred ccEEEeecc---------CCccccc-c--------ccccccccC-chhHHHhhc-CCCCccEEEEEec-----Cccc---
Q 038877 127 LEVLRLLWC---------GLWSRKE-Q--------EEGSVLYDD-AEPLMKELL-GLKHLNVLSWSLH-----SSLA--- 178 (298)
Q Consensus 127 L~~L~l~~~---------~~~~~~~-~--------~~~~~~~~~-~~~~~~~l~-~l~~L~~l~l~~~-----~~~~--- 178 (298)
|+.|++.++ .++...- . ......... .......+. .+++|+.|+++.+ ....
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence 777766432 1110000 0 000000000 111222222 3455555555521 1111
Q ss_pred -hhhhccccccccceeEEEEeccCCCCcccccccc-cccccceecccCCcceeeecchhhhhccccccCCcccEEeccCC
Q 038877 179 -VQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAY-MENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYC 256 (298)
Q Consensus 179 -~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 256 (298)
...+......+++|++|++++ ...+.....+.. +++|+.|++++|.+...++..+. ..+++|+.|++++|
T Consensus 420 ~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~-------~~~~~L~~L~L~~n 491 (594)
T 2p1m_B 420 LDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVL-------SGCDSLRKLEIRDC 491 (594)
T ss_dssp THHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHH-------HHCTTCCEEEEESC
T ss_pred hhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHH-------hcCCCcCEEECcCC
Confidence 011111123334555555544 222222223333 56677777766665443222221 35788888888888
Q ss_pred CCCCchh---hhhhcCCCcEEEeecCcc
Q 038877 257 QKAKDLT---WLVFAQNLKELRIDSCYD 281 (298)
Q Consensus 257 ~~l~~l~---~l~~~~~L~~L~l~~c~~ 281 (298)
. +++.. ....+++|++|++.+|+.
T Consensus 492 ~-~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 492 P-FGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp S-CCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred C-CcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 4 45432 234578888888888865
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.64 E-value=2e-15 Score=121.15 Aligned_cols=129 Identities=27% Similarity=0.368 Sum_probs=71.8
Q ss_pred CCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCeee
Q 038877 7 EGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHLD 83 (298)
Q Consensus 7 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~ 83 (298)
++|++|++++|.+..++ .+..+++|++|++++|.++.++...+..+++|++|++++| .++.++. .+..+++|++|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEe
Confidence 44566666666655542 2355566666666666555555444555666666666666 5554433 345556666666
Q ss_pred ccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCC
Q 038877 84 LSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGL 137 (298)
Q Consensus 84 l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 137 (298)
+++|.+..+|..+..+++|++|++++| .+..++...+..+++|+.|++.+|.+
T Consensus 119 Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 119 MCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred ccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 666655555555555666666666655 33344433455566666666665554
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.63 E-value=6.3e-15 Score=116.39 Aligned_cols=131 Identities=23% Similarity=0.366 Sum_probs=114.3
Q ss_pred CCCccEEEeecCCCcCCCC--CCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCee
Q 038877 6 WEGAKRISLMKTGIQSPSE--IPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHL 82 (298)
Q Consensus 6 ~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L 82 (298)
.++|++|++++|.+..++. +..+++|++|++++|.+..++...+..+++|++|++++| .+..+|. .+..+++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEE
Confidence 5689999999999998764 478999999999999999888776889999999999999 8887765 57899999999
Q ss_pred eccCCcccccchh-hcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCc
Q 038877 83 DLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLW 138 (298)
Q Consensus 83 ~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 138 (298)
++++|.++.++.. +..+++|++|++++|. +..++...+..+++|+.|++++|.+.
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee
Confidence 9999999977754 7899999999999994 55666666899999999999999873
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.63 E-value=2.8e-15 Score=119.52 Aligned_cols=129 Identities=26% Similarity=0.320 Sum_probs=113.2
Q ss_pred CCccEEEeecCCCcCCC--CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCeee
Q 038877 7 EGAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHLD 83 (298)
Q Consensus 7 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~ 83 (298)
++++.|++++|.+..++ .+..+++|++|++++|.+..+.+..+..+++|++|++++| .+..+|. .+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEE
Confidence 57999999999999866 4588999999999999999776555999999999999999 8888876 468899999999
Q ss_pred ccCCccccc-chhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCC
Q 038877 84 LSWTRIRGL-PQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGL 137 (298)
Q Consensus 84 l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 137 (298)
+++|.+..+ +..+..+++|++|++++| .+..++...+..+++|+.|++++|.+
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 999999976 467899999999999999 45666665689999999999999987
No 113
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.63 E-value=5.5e-16 Score=119.22 Aligned_cols=131 Identities=19% Similarity=0.236 Sum_probs=82.9
Q ss_pred cccCCCccEEEeecCCCcCCCCCCCCC-cccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCcc-ccCccCCC
Q 038877 3 VEEWEGAKRISLMKTGIQSPSEIPTCP-RLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSG-ISNLVSLH 80 (298)
Q Consensus 3 ~~~~~~L~~L~l~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~-~~~l~~L~ 80 (298)
+..+++|+.|++++|.+..++.+..+. +|++|++++|.+..++ . +..+++|++|++++| .+..+|+. +..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~-~-l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-G-FPLLRRLKTLLVNNN-RICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-C-CCCCSSCCEEECCSS-CCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCccc-c-cccCCCCCEEECCCC-cccccCcchhhcCCCCC
Confidence 455667777777777776666554433 7777777777666552 2 666777777777777 66655543 36667777
Q ss_pred eeeccCCcccccch--hhcCCCcccEEeccCCccCCCCchh---hhcCCCcccEEEeeccCC
Q 038877 81 HLDLSWTRIRGLPQ--ELKALEKLRYLSLEGTRHLSIIPHQ---LISGFSKLEVLRLLWCGL 137 (298)
Q Consensus 81 ~L~l~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~ 137 (298)
+|++++|.+..+|. .+..+++|+.|++++|.. ..+|.. .+..+++|+.|++++|..
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 77777776666665 566667777777776633 344432 356666666666666654
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=2.4e-15 Score=114.67 Aligned_cols=127 Identities=18% Similarity=0.174 Sum_probs=64.5
Q ss_pred CCccEEEeecCCCc--CCCCC-CCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCcc-CCccccCccCCCee
Q 038877 7 EGAKRISLMKTGIQ--SPSEI-PTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSK-LPSGISNLVSLHHL 82 (298)
Q Consensus 7 ~~L~~L~l~~~~~~--~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L 82 (298)
++|+.|++++|.+. .+|.. ..+++|++|++++|.+..+ .. +..+++|++|++++| .+.. +|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SN-LPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SS-CCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hh-hccCCCCCEEECcCC-cCchHHHHHHhhCCCCCEE
Confidence 44555555555555 34433 4455555555555555544 22 455555555555555 4443 44444445555555
Q ss_pred eccCCcccccc--hhhcCCCcccEEeccCCccCCCCch---hhhcCCCcccEEEeeccCC
Q 038877 83 DLSWTRIRGLP--QELKALEKLRYLSLEGTRHLSIIPH---QLISGFSKLEVLRLLWCGL 137 (298)
Q Consensus 83 ~l~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~ 137 (298)
++++|.++.++ ..+..+++|++|++++|.. ..++. ..+..+++|+.|++++|..
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEV-TNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGG-GTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcC-cchHHHHHHHHHhCccCcEecCCCCCh
Confidence 55555555443 3455555555555555532 23332 2245555555555555544
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.60 E-value=7.1e-15 Score=132.52 Aligned_cols=178 Identities=19% Similarity=0.180 Sum_probs=128.7
Q ss_pred cccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccchhhcCCCcccEEeccC
Q 038877 30 RLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEG 109 (298)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~ 109 (298)
+++.|++++|.++.+|... .++|++|++++| .++.+| ..+++|++|++++|.++.+|. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQN-ALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC---CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhH---cCCCCEEECcCC-CCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 7888999998888777652 377899999998 787777 457889999999988888887 544 889999988
Q ss_pred CccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccccccc
Q 038877 110 TRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLL 189 (298)
Q Consensus 110 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~ 189 (298)
|. ++.+|. .+++|+.|++++|.+.. ++. .+++|+.|++++|....++. ..
T Consensus 130 N~-l~~lp~----~l~~L~~L~Ls~N~l~~----------------lp~---~l~~L~~L~Ls~N~L~~lp~------l~ 179 (571)
T 3cvr_A 130 NQ-LTMLPE----LPALLEYINADNNQLTM----------------LPE---LPTSLEVLSVRNNQLTFLPE------LP 179 (571)
T ss_dssp SC-CSCCCC----CCTTCCEEECCSSCCSC----------------CCC---CCTTCCEEECCSSCCSCCCC------CC
T ss_pred Cc-CCCCCC----cCccccEEeCCCCccCc----------------CCC---cCCCcCEEECCCCCCCCcch------hh
Confidence 84 444665 57889999999888843 222 46788888888887655433 11
Q ss_pred cceeEEEEeccCCCCcccccccccccc-------cceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCc
Q 038877 190 SITQSVGVYFCQSPPLNVLHLAYMENL-------QELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKD 261 (298)
Q Consensus 190 ~~L~~L~l~~~~~~~~~~~~l~~l~~L-------~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 261 (298)
++|+.|++++|....... +.. +| +.|++++|.+..++.... .+++|+.|++++| .++.
T Consensus 180 ~~L~~L~Ls~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~---------~l~~L~~L~L~~N-~l~~ 244 (571)
T 3cvr_A 180 ESLEALDVSTNLLESLPA--VPV--RNHHSEETEIFFRCRENRITHIPENIL---------SLDPTCTIILEDN-PLSS 244 (571)
T ss_dssp TTCCEEECCSSCCSSCCC--CC----------CCEEEECCSSCCCCCCGGGG---------GSCTTEEEECCSS-SCCH
T ss_pred CCCCEEECcCCCCCchhh--HHH--hhhcccccceEEecCCCcceecCHHHh---------cCCCCCEEEeeCC-cCCC
Confidence 778888888887653332 332 55 888888888876543332 4788888888888 4544
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.60 E-value=6.1e-15 Score=117.55 Aligned_cols=130 Identities=22% Similarity=0.260 Sum_probs=112.0
Q ss_pred CCccEEEeecCCCcCCC-C--CCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCee
Q 038877 7 EGAKRISLMKTGIQSPS-E--IPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHL 82 (298)
Q Consensus 7 ~~L~~L~l~~~~~~~~~-~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L 82 (298)
..++.|++++|.++.++ . +..+++|++|++++|.+..++...+..+++|++|++++| .+..++. .+..+++|++|
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEE
Confidence 46789999999999863 2 478999999999999999888766999999999999999 7877654 68899999999
Q ss_pred eccCCccccc-chhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCc
Q 038877 83 DLSWTRIRGL-PQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLW 138 (298)
Q Consensus 83 ~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 138 (298)
++++|.+..+ |..+..+++|++|++++|.. ..++...+..+++|+.|++++|.+.
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQI-TTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCC-CCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcC-CEECHHHhcCCCCCCEEEecCcCCc
Confidence 9999999976 57789999999999999954 4553334899999999999999873
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.59 E-value=2.8e-15 Score=128.56 Aligned_cols=154 Identities=18% Similarity=0.168 Sum_probs=101.9
Q ss_pred cEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHh-cCCCccEEEccCCcCCccCC-ccccCccCCCeeeccCC
Q 038877 10 KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFR-SMSSLRVLSLRRNLALSKLP-SGISNLVSLHHLDLSWT 87 (298)
Q Consensus 10 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~ 87 (298)
+.++++++.+..+|.. -.+.++.|++++|.+..++...+. .+++|++|++++| .+..++ ..+..+++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC
Confidence 5677777777777642 134577888888877766665455 7788888888888 676664 45777888888888888
Q ss_pred cccccch-hhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCc
Q 038877 88 RIRGLPQ-ELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHL 166 (298)
Q Consensus 88 ~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 166 (298)
.++.++. .+..+++|++|++++|.. ..++...+.++++|+.|++++|.+.. . .......+..+++|
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~L~~N~l~~-----------l-~~~~~~~~~~l~~L 165 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQLQKLYLSQNQISR-----------F-PVELIKDGNKLPKL 165 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCCS-----------C-CGGGTC----CTTC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcc-cEECHHHhCCcccCCEEECCCCcCCe-----------e-CHHHhcCcccCCcC
Confidence 7776654 467788888888888743 44433347778888888888887743 0 00111112456777
Q ss_pred cEEEEEecCccc
Q 038877 167 NVLSWSLHSSLA 178 (298)
Q Consensus 167 ~~l~l~~~~~~~ 178 (298)
+.|++++|....
T Consensus 166 ~~L~L~~N~l~~ 177 (361)
T 2xot_A 166 MLLDLSSNKLKK 177 (361)
T ss_dssp CEEECCSSCCCC
T ss_pred CEEECCCCCCCc
Confidence 777777766543
No 118
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=2.4e-15 Score=112.30 Aligned_cols=124 Identities=21% Similarity=0.213 Sum_probs=84.8
Q ss_pred CCCccEEEeecCCCc--CCCCC-CCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCcc-CCccccCccCCCe
Q 038877 6 WEGAKRISLMKTGIQ--SPSEI-PTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSK-LPSGISNLVSLHH 81 (298)
Q Consensus 6 ~~~L~~L~l~~~~~~--~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~ 81 (298)
.++|+.|++++|.+. .+|.. ..+++|++|++++|.+..+ .. +..+++|++|++++| .+.. +|..+..+++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-AN-LPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TT-CCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hh-hhcCCCCCEEECCCC-cccchHHHHhhhCCCCCE
Confidence 466777788777777 45544 6677777777777777665 32 677777777777777 6655 5666666777777
Q ss_pred eeccCCcccccc--hhhcCCCcccEEeccCCccCCCCch---hhhcCCCcccEEEee
Q 038877 82 LDLSWTRIRGLP--QELKALEKLRYLSLEGTRHLSIIPH---QLISGFSKLEVLRLL 133 (298)
Q Consensus 82 L~l~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~ 133 (298)
|++++|.++.++ ..++.+++|++|++++|.. ..++. ..++.+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV-TNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG-GGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc-cchHHHHHHHHHHCCCcccccCC
Confidence 777777777654 5677777777777777743 33333 346677777777654
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.59 E-value=3.4e-15 Score=128.06 Aligned_cols=154 Identities=24% Similarity=0.242 Sum_probs=125.5
Q ss_pred CCccEEEeecCCCcCCCC--CC-CCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCee
Q 038877 7 EGAKRISLMKTGIQSPSE--IP-TCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHL 82 (298)
Q Consensus 7 ~~L~~L~l~~~~~~~~~~--~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L 82 (298)
..++.|++++|.++.++. +. .+++|++|++++|.+..++...+..+++|++|++++| .+..++. .+..+++|++|
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEE
Confidence 458999999999998653 34 8999999999999999888766899999999999999 7887754 68899999999
Q ss_pred eccCCccccc-chhhcCCCcccEEeccCCccCCCCchhhh---cCCCcccEEEeeccCCccccccccccccccCchhHHH
Q 038877 83 DLSWTRIRGL-PQELKALEKLRYLSLEGTRHLSIIPHQLI---SGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMK 158 (298)
Q Consensus 83 ~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (298)
++++|.+..+ +..+..+++|+.|++++| .+..+|...+ ..+++|+.|++++|.+.. ....
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~---------------l~~~ 181 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKK---------------LPLT 181 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCCC---------------CCHH
T ss_pred ECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCCc---------------cCHH
Confidence 9999999966 567899999999999999 5667777655 679999999999999843 2234
Q ss_pred hhcCCCC--ccEEEEEecCcc
Q 038877 159 ELLGLKH--LNVLSWSLHSSL 177 (298)
Q Consensus 159 ~l~~l~~--L~~l~l~~~~~~ 177 (298)
.+..++. ++.+++.+|...
T Consensus 182 ~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 182 DLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp HHHHSCHHHHTTEECCSSCEE
T ss_pred HhhhccHhhcceEEecCCCcc
Confidence 4555555 477888887653
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=1.2e-14 Score=110.84 Aligned_cols=136 Identities=24% Similarity=0.228 Sum_probs=109.3
Q ss_pred CCCCcccEEEecCCccc--ccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccc-cchhhcCCCcc
Q 038877 26 PTCPRLVTFLLDGNWIE--EITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRG-LPQELKALEKL 102 (298)
Q Consensus 26 ~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L 102 (298)
...++|++|++++|.+. .++.. +..+++|++|++++| .+..+ ..+..+++|++|++++|.+.. +|..+..+++|
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred CCcccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 34588999999999887 77766 788999999999999 78777 678889999999999999886 77778889999
Q ss_pred cEEeccCCccCCCCch-hhhcCCCcccEEEeeccCCccccccccccccccCchh-HHHhhcCCCCccEEEEEecCccc
Q 038877 103 RYLSLEGTRHLSIIPH-QLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEP-LMKELLGLKHLNVLSWSLHSSLA 178 (298)
Q Consensus 103 ~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~L~~l~l~~~~~~~ 178 (298)
++|++++| .+..++. ..+..+++|+.|++++|.+.. ... ....+..+++|+.++++.+....
T Consensus 98 ~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-------------~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 98 THLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTN-------------LNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGT-------------STTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred CEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcc-------------hHHHHHHHHHhCccCcEecCCCCChhh
Confidence 99999999 4555542 348899999999999998843 111 12467888999999998876543
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=8.2e-14 Score=108.62 Aligned_cols=124 Identities=26% Similarity=0.406 Sum_probs=104.0
Q ss_pred cEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCC-ccccCccCCCeeeccCCc
Q 038877 10 KRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLP-SGISNLVSLHHLDLSWTR 88 (298)
Q Consensus 10 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~ 88 (298)
+.++++++.+..+|.. -.++|++|++++|.+..++.. +..+++|++|++++| .++.++ ..|..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~-~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKE-LSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGG-GGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHH-hhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc
Confidence 6788899988888753 246899999999999888865 889999999999999 787765 468889999999999999
Q ss_pred ccccch-hhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCC
Q 038877 89 IRGLPQ-ELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGL 137 (298)
Q Consensus 89 ~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 137 (298)
++.++. .+..+++|++|++++| .+..++.+.+..+++|+.|++++|.+
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCe
Confidence 987764 6888999999999998 45667766688899999999998877
No 122
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.54 E-value=1.1e-13 Score=106.43 Aligned_cols=134 Identities=21% Similarity=0.311 Sum_probs=111.1
Q ss_pred CcccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCC
Q 038877 2 KVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLH 80 (298)
Q Consensus 2 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~ 80 (298)
..+.| ..+.+++.++.+..+|.. -.++|++|++++|.+..++...+..+++|++|++++| .+..+|. .++.+++|+
T Consensus 3 ~~C~C-~~~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~ 79 (177)
T 2o6r_A 3 SRCSC-SGTEIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLT 79 (177)
T ss_dssp TTCEE-ETTEEECCSSCCSSCCTT-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred CCCEe-CCCEEEecCCCCccCCCC-CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccC
Confidence 33444 467899999999888743 3479999999999998888766889999999999999 8887765 478899999
Q ss_pred eeeccCCcccccchh-hcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCcc
Q 038877 81 HLDLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWS 139 (298)
Q Consensus 81 ~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 139 (298)
+|++++|.++.++.. +..+++|++|++++| .+..++...+..+++|+.|++++|.+..
T Consensus 80 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 80 ILYLHENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EEECCCCCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCeec
Confidence 999999999977754 688999999999999 4567777667889999999999998843
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.54 E-value=4.7e-14 Score=109.92 Aligned_cols=133 Identities=19% Similarity=0.288 Sum_probs=107.2
Q ss_pred CcccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCch-HHhcCCCccEEEccCCcCCccC-CccccCccCC
Q 038877 2 KVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDG-FFRSMSSLRVLSLRRNLALSKL-PSGISNLVSL 79 (298)
Q Consensus 2 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L 79 (298)
..+.|. -+.++++++.+..+|... ..++++|++++|.+..++.. ++..+++|++|++++| .++.+ |..+..+++|
T Consensus 4 ~~C~C~-~~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 80 (192)
T 1w8a_A 4 AMCHCE-GTTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHI 80 (192)
T ss_dssp TTSEEE-TTEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTC
T ss_pred CCCEEC-CCEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccC
Confidence 344443 378999999998887532 33899999999999877653 4889999999999999 77766 6788999999
Q ss_pred CeeeccCCcccccch-hhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCc
Q 038877 80 HHLDLSWTRIRGLPQ-ELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLW 138 (298)
Q Consensus 80 ~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 138 (298)
++|++++|.++.++. .+..+++|++|++++|...+..|. .+..+++|+.|++++|.+.
T Consensus 81 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 81 QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG-SFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECTTCCBC
T ss_pred CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH-HhhcCCCCCEEEeCCCCcc
Confidence 999999999996654 488899999999999955444455 4889999999999999874
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.51 E-value=1.7e-14 Score=107.67 Aligned_cols=129 Identities=20% Similarity=0.259 Sum_probs=100.2
Q ss_pred CCCcccEEEecCCccc--ccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccc-cchhhcCCCccc
Q 038877 27 TCPRLVTFLLDGNWIE--EITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRG-LPQELKALEKLR 103 (298)
Q Consensus 27 ~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~ 103 (298)
..++++.|++++|.+. .++.. +..+++|++|++++| .+..+ ..++.+++|++|++++|.+.. +|..+..+++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 4578999999999887 67665 788999999999999 77776 668889999999999998886 777788899999
Q ss_pred EEeccCCccCCCCc-hhhhcCCCcccEEEeeccCCccccccccccccccCchhH-HHhhcCCCCccEEEEE
Q 038877 104 YLSLEGTRHLSIIP-HQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPL-MKELLGLKHLNVLSWS 172 (298)
Q Consensus 104 ~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~l~l~ 172 (298)
+|++++|. +..++ ...++.+++|+.|++++|.+.. .... ...+..+++|+.++++
T Consensus 92 ~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~-------------~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTN-------------LNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGG-------------STTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccc-------------hHHHHHHHHHHCCCcccccCC
Confidence 99999984 45543 1238889999999999998843 1111 1456677888877653
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=1.4e-13 Score=105.62 Aligned_cols=109 Identities=21% Similarity=0.280 Sum_probs=97.7
Q ss_pred CcccCC-CccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc--cccCccC
Q 038877 2 KVEEWE-GAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS--GISNLVS 78 (298)
Q Consensus 2 ~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~--~~~~l~~ 78 (298)
.+..+. +|+.|++++|.+.+++.+..+++|++|++++|.+..+++..+..+++|++|++++| .++.+|. .+..+++
T Consensus 36 ~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~ 114 (176)
T 1a9n_A 36 NLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKS 114 (176)
T ss_dssp CGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTT
T ss_pred HhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCC
Confidence 355555 99999999999999888899999999999999999888776799999999999999 8888876 7889999
Q ss_pred CCeeeccCCcccccchh----hcCCCcccEEeccCCc
Q 038877 79 LHHLDLSWTRIRGLPQE----LKALEKLRYLSLEGTR 111 (298)
Q Consensus 79 L~~L~l~~~~~~~l~~~----~~~l~~L~~L~l~~~~ 111 (298)
|++|++++|.+..+|.. +..+++|+.|+++++.
T Consensus 115 L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 115 LTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 99999999999988874 8999999999998873
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.46 E-value=2.7e-13 Score=122.60 Aligned_cols=104 Identities=19% Similarity=0.214 Sum_probs=71.7
Q ss_pred cccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccchhhcCCCcccEEeccC
Q 038877 30 RLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLEG 109 (298)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~ 109 (298)
.|++|++++|.+..+|. ++.+++|++|++++| .+..+|..++.+++|++|++++|.++.+| .++.+++|+.|++++
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCCCcC--ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence 36777777777766664 667777777777777 66677777777777777777777777766 667777777777777
Q ss_pred CccCCCC-chhhhcCCCcccEEEeeccCCc
Q 038877 110 TRHLSII-PHQLISGFSKLEVLRLLWCGLW 138 (298)
Q Consensus 110 ~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~ 138 (298)
|...+.. |.. ++++++|+.|++++|.+.
T Consensus 518 N~l~~~~~p~~-l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 518 NRLQQSAAIQP-LVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp SCCCSSSTTGG-GGGCTTCCEEECTTSGGG
T ss_pred CCCCCCCCcHH-HhcCCCCCEEEecCCcCC
Confidence 7433332 443 677777777777777664
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.44 E-value=1.9e-13 Score=106.45 Aligned_cols=127 Identities=20% Similarity=0.235 Sum_probs=103.3
Q ss_pred ccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc--cccCccCCCeeeccCCccccc-chhhcCCCcccEEec
Q 038877 31 LVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS--GISNLVSLHHLDLSWTRIRGL-PQELKALEKLRYLSL 107 (298)
Q Consensus 31 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~--~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l 107 (298)
-++++++++.++.+|.. + ..++++|++++| .+..++. .++.+++|++|++++|.++.+ |..+..+++|++|++
T Consensus 10 ~~~l~~s~~~l~~ip~~-~--~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRD-I--PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TTEEECTTSCCSSCCSC-C--CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCEEEcCCCCcCcCccC-C--CCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 37899999999888875 2 238999999999 8887765 388999999999999999966 678999999999999
Q ss_pred cCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCcc
Q 038877 108 EGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSL 177 (298)
Q Consensus 108 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~ 177 (298)
++|.. ..++...+.++++|+.|++++|.+. ...+..+..+++|+.+++++|...
T Consensus 86 s~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~---------------~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 86 GENKI-KEISNKMFLGLHQLKTLNLYDNQIS---------------CVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSCCC-CEECSSSSTTCTTCCEEECCSSCCC---------------EECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCcC-CccCHHHhcCCCCCCEEECCCCcCC---------------eeCHHHhhcCCCCCEEEeCCCCcc
Confidence 99954 4455445889999999999999984 344566778888888888877654
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.44 E-value=5.2e-13 Score=104.05 Aligned_cols=127 Identities=23% Similarity=0.252 Sum_probs=104.5
Q ss_pred ccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccc-hhhcCCCcccEEeccC
Q 038877 31 LVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLP-QELKALEKLRYLSLEG 109 (298)
Q Consensus 31 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~ 109 (298)
-++++++++.+..+|.. + .++|++|++++| .+..+|..+..+++|++|++++|.++.++ ..+..+++|++|++++
T Consensus 12 ~~~l~~~~~~l~~ip~~-~--~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKG-I--PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TTEEECTTSCCSSCCSC-C--CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCCCcCCCC-C--CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 36789999998888865 2 368999999999 88899988999999999999999999776 4689999999999999
Q ss_pred CccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCcc
Q 038877 110 TRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSL 177 (298)
Q Consensus 110 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~ 177 (298)
|. +..++...+.++++|+.|++++|.+.. .....+..+++|+.+++++|...
T Consensus 88 N~-l~~i~~~~f~~l~~L~~L~L~~N~l~~---------------~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NR-LRCIPPRTFDGLKSLRLLSLHGNDISV---------------VPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SC-CCBCCTTTTTTCTTCCEEECCSSCCCB---------------CCTTTTTTCTTCCEEECCSSCEE
T ss_pred Cc-cCEeCHHHhCCCCCCCEEECCCCCCCe---------------eChhhhhcCccccEEEeCCCCee
Confidence 94 556665558999999999999999843 22345677888999988877653
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.43 E-value=3.3e-13 Score=125.62 Aligned_cols=111 Identities=26% Similarity=0.301 Sum_probs=96.7
Q ss_pred CCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccchhhcCCCcccE
Q 038877 25 IPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRY 104 (298)
Q Consensus 25 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~ 104 (298)
+..++.|++|++++|.+..++.. +..+++|++|++++| .++.+|..++.+++|++|+|++|.++.+|..++.+++|++
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred hccCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence 36788999999999988888877 558999999999999 8888898899999999999999999999988999999999
Q ss_pred EeccCCccCCCCchhhhcCCCcccEEEeeccCCcc
Q 038877 105 LSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWS 139 (298)
Q Consensus 105 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 139 (298)
|++++| .++.+|.. ++++++|+.|++++|.+.+
T Consensus 298 L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 298 FYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp EECCSS-CCCCCCSS-TTSCTTCCCEECTTSCCCS
T ss_pred EECCCC-CCCccChh-hhcCCCccEEeCCCCccCC
Confidence 999998 55788886 8999999999999998854
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.43 E-value=1.7e-13 Score=127.59 Aligned_cols=151 Identities=19% Similarity=0.190 Sum_probs=98.4
Q ss_pred CCccEEEeecCCCcCCCC-CCCCCcccEEE-----ecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCC
Q 038877 7 EGAKRISLMKTGIQSPSE-IPTCPRLVTFL-----LDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLH 80 (298)
Q Consensus 7 ~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~-----l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 80 (298)
++++.|++.++.+...+. ......|..+. +..+.+. ++...+..++.|++|++++| .+..+|..+..+++|+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLT 250 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTS-CCSCCCGGGGGCCSCS
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCC
Confidence 456778888877766442 22333333333 3333333 34444889999999999999 8889998888999999
Q ss_pred eeeccCCcccccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhh
Q 038877 81 HLDLSWTRIRGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKEL 160 (298)
Q Consensus 81 ~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 160 (298)
+|+|++|.++.+|..++.+++|++|++++|. +..+|.. ++++++|+.|++++|.+.. ++..+
T Consensus 251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~----------------lp~~~ 312 (727)
T 4b8c_D 251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAE-LGSCFQLKYFYFFDNMVTT----------------LPWEF 312 (727)
T ss_dssp CCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSS-GGGGTTCSEEECCSSCCCC----------------CCSST
T ss_pred EEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChh-hcCCCCCCEEECCCCCCCc----------------cChhh
Confidence 9999999999999999999999999999995 5588886 8999999999999998843 66778
Q ss_pred cCCCCccEEEEEecCcc
Q 038877 161 LGLKHLNVLSWSLHSSL 177 (298)
Q Consensus 161 ~~l~~L~~l~l~~~~~~ 177 (298)
..+++|+.|++++|...
T Consensus 313 ~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 313 GNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp TSCTTCCCEECTTSCCC
T ss_pred hcCCCccEEeCCCCccC
Confidence 99999999999998875
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=2.4e-15 Score=117.95 Aligned_cols=107 Identities=28% Similarity=0.336 Sum_probs=62.1
Q ss_pred CCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccchhhcCCCcccEE
Q 038877 26 PTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYL 105 (298)
Q Consensus 26 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L 105 (298)
..+++|++|++++|.+..++ . +..+++|++|++++| .+..+|..+..+++|++|++++|.++.+| .+..+++|++|
T Consensus 45 ~~l~~L~~L~ls~n~l~~l~-~-~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 45 STLKACKHLALSTNNIEKIS-S-LSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHTTTCSEEECSEEEESCCC-C-HHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred hcCCCCCEEECCCCCCcccc-c-cccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence 45566666666666655555 2 556666666666666 55555555555566666666666666554 45556666666
Q ss_pred eccCCccCCCCch-hhhcCCCcccEEEeeccCC
Q 038877 106 SLEGTRHLSIIPH-QLISGFSKLEVLRLLWCGL 137 (298)
Q Consensus 106 ~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~ 137 (298)
++++|. +..++. ..+..+++|+.|++++|.+
T Consensus 121 ~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 121 YMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp EESEEE-CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred ECCCCc-CCchhHHHHHhcCCCCCEEEecCCcc
Confidence 666652 333332 2255666666666666655
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.39 E-value=1.3e-12 Score=118.12 Aligned_cols=151 Identities=22% Similarity=0.290 Sum_probs=109.9
Q ss_pred CCCCcccEEE-ecCCcccccCch-----HHhc--CCCccEEEccCCcCCccCCccccCccCCCeeeccCCcccccchhhc
Q 038877 26 PTCPRLVTFL-LDGNWIEEITDG-----FFRS--MSSLRVLSLRRNLALSKLPSGISNLVSLHHLDLSWTRIRGLPQELK 97 (298)
Q Consensus 26 ~~~~~L~~L~-l~~~~~~~~~~~-----~~~~--~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~l~~~~~ 97 (298)
..+++|+.|+ +..+.+..++.. .+.. ...|++|++++| .++.+|. ++.+++|++|++++|.++.+|..++
T Consensus 406 ~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~ 483 (567)
T 1dce_A 406 QYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALA 483 (567)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGG
T ss_pred HHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCcccccccchhhh
Confidence 4567777777 454433322210 0111 135889999999 8888886 8889999999999999989998999
Q ss_pred CCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhH-HHhhcCCCCccEEEEEecCc
Q 038877 98 ALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPL-MKELLGLKHLNVLSWSLHSS 176 (298)
Q Consensus 98 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~l~l~~~~~ 176 (298)
.+++|+.|++++|. ++.+| . ++++++|+.|++++|.+.+ .. +..+..+++|+.|++++|..
T Consensus 484 ~l~~L~~L~Ls~N~-l~~lp-~-l~~l~~L~~L~Ls~N~l~~---------------~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 484 ALRCLEVLQASDNA-LENVD-G-VANLPRLQELLLCNNRLQQ---------------SAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp GCTTCCEEECCSSC-CCCCG-G-GTTCSSCCEEECCSSCCCS---------------SSTTGGGGGCTTCCEEECTTSGG
T ss_pred cCCCCCEEECCCCC-CCCCc-c-cCCCCCCcEEECCCCCCCC---------------CCCcHHHhcCCCCCEEEecCCcC
Confidence 99999999999984 45577 3 8999999999999998843 22 67788899999999999888
Q ss_pred cchhh-hccccccccceeEEE
Q 038877 177 LAVQK-FLKYPKLLSITQSVG 196 (298)
Q Consensus 177 ~~~~~-~~~~~~~~~~L~~L~ 196 (298)
..... ........++|+.|+
T Consensus 546 ~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 546 CQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCccHHHHHHHHCcccCccC
Confidence 66543 222233456677664
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.38 E-value=9.8e-13 Score=111.25 Aligned_cols=241 Identities=13% Similarity=0.115 Sum_probs=127.7
Q ss_pred CCCccEEEeecCCCcCCCCC-CCCCcccEEEecCCcccccCchHHhc--------CCCccEEEccCCcCCccCC-ccccC
Q 038877 6 WEGAKRISLMKTGIQSPSEI-PTCPRLVTFLLDGNWIEEITDGFFRS--------MSSLRVLSLRRNLALSKLP-SGISN 75 (298)
Q Consensus 6 ~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~--------~~~L~~L~l~~~~~~~~~p-~~~~~ 75 (298)
+++|+.|++++|.+..+... ..++.++.+.+..+ .++..+|.. +++|+.+++.. .+..++ .+|.+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTT
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhc
Confidence 67899999999988732111 22333445555555 445555777 88888888887 355554 46888
Q ss_pred ccCCCeeeccCCcccccc-hhhcCCCcccEEeccCCc---cCCCCchhhhcCCCccc-EEEeeccCCccccccccccccc
Q 038877 76 LVSLHHLDLSWTRIRGLP-QELKALEKLRYLSLEGTR---HLSIIPHQLISGFSKLE-VLRLLWCGLWSRKEQEEGSVLY 150 (298)
Q Consensus 76 l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~---~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~ 150 (298)
|.+|+.+++..+.+..++ ..+..+.++..+...... ....+....+.++..|+ .+.+......
T Consensus 123 ~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l------------ 190 (329)
T 3sb4_A 123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKL------------ 190 (329)
T ss_dssp CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCH------------
T ss_pred CcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcH------------
Confidence 888999999888776555 346666666666655421 11223333345556665 4444332210
Q ss_pred cCchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceee
Q 038877 151 DDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMK 230 (298)
Q Consensus 151 ~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 230 (298)
.......-....+++.+.+.+.-.. ..+......++.|+.+++.++........++.++++|+++++.++ +..++
T Consensus 191 --~~~~~~~~~~~~~~~~l~~~~~l~~--~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~ 265 (329)
T 3sb4_A 191 --EDEIMKAGLQPRDINFLTIEGKLDN--ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIG 265 (329)
T ss_dssp --HHHHHHTTCCGGGCSEEEEEECCCH--HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEEC
T ss_pred --HHHHhhcccCccccceEEEeeeecH--HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceeh
Confidence 1111111123344555555433211 111111122455666666655444444455666666666666655 33344
Q ss_pred ecchhhhhccccccCCccc-EEeccCCCCCCchh--hhhhcCCCcEEEeec
Q 038877 231 IDSAEEVKKLFRSGFRSLN-TVSVDYCQKAKDLT--WLVFAQNLKELRIDS 278 (298)
Q Consensus 231 ~~~~~~~~~~~~~~~~~L~-~L~l~~c~~l~~l~--~l~~~~~L~~L~l~~ 278 (298)
...+ .++++|+ .+++.+ .++.++ ....|++|+++++.+
T Consensus 266 ~~aF--------~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~ 306 (329)
T 3sb4_A 266 QRVF--------SNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG 306 (329)
T ss_dssp TTTT--------TTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS
T ss_pred HHHh--------hCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC
Confidence 4444 4556666 666655 444443 234556666666543
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.35 E-value=7.8e-12 Score=95.94 Aligned_cols=110 Identities=25% Similarity=0.373 Sum_probs=95.4
Q ss_pred CCCccEEEeecCCCcCCCC--CCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCee
Q 038877 6 WEGAKRISLMKTGIQSPSE--IPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHL 82 (298)
Q Consensus 6 ~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L 82 (298)
.++|+.|++++|.+..++. +..+++|++|++++|.+..++...+..+++|++|++++| .++.+|. .+..+++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEE
Confidence 4789999999999998764 478999999999999999888776889999999999999 8887765 57889999999
Q ss_pred eccCCcccccchh-hcCCCcccEEeccCCccCCCC
Q 038877 83 DLSWTRIRGLPQE-LKALEKLRYLSLEGTRHLSII 116 (298)
Q Consensus 83 ~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~ 116 (298)
++++|.++.++.. +..+++|++|++++|......
T Consensus 106 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 106 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred ECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 9999999988765 578999999999999655443
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.35 E-value=1.1e-14 Score=114.08 Aligned_cols=131 Identities=24% Similarity=0.292 Sum_probs=110.2
Q ss_pred CcccCCCccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCCe
Q 038877 2 KVEEWEGAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLHH 81 (298)
Q Consensus 2 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 81 (298)
.+.++++|++|++++|.+..+|.+..+++|++|++++|.+..++.. +..+++|++|++++| .+..+| .+..+++|++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYN-QIASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSH-HHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSE
T ss_pred HHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccch-hhcCCcCCEEECcCC-cCCcCC-ccccCCCCCE
Confidence 3677899999999999999998778899999999999999888875 778899999999999 888777 5888999999
Q ss_pred eeccCCcccccch--hhcCCCcccEEeccCCccCCCCc---------hhhhcCCCcccEEEeeccCC
Q 038877 82 LDLSWTRIRGLPQ--ELKALEKLRYLSLEGTRHLSIIP---------HQLISGFSKLEVLRLLWCGL 137 (298)
Q Consensus 82 L~l~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~---------~~~~~~l~~L~~L~l~~~~~ 137 (298)
|++++|.+..++. .+..+++|++|++++|......| ...+..+++|+.|+ ++.+
T Consensus 120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV 184 (198)
T ss_dssp EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred EECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence 9999999997764 68999999999999995533322 22367888999887 4444
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.31 E-value=2e-11 Score=93.37 Aligned_cols=101 Identities=22% Similarity=0.338 Sum_probs=58.1
Q ss_pred cEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCeeeccCCcccccchh-hcCCCcccEEeccC
Q 038877 32 VTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHLDLSWTRIRGLPQE-LKALEKLRYLSLEG 109 (298)
Q Consensus 32 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~ 109 (298)
+.++++++.++.+|.. + .++|++|++++| .+..+ |..+..+++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 15 ~~l~~~~n~l~~iP~~-~--~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAG-I--PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSSCCSC-C--CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCccCCC-c--CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 4555666655555543 2 255666666666 55544 34555666666666666666655543 45666666666666
Q ss_pred CccCCCCchhhhcCCCcccEEEeeccCC
Q 038877 110 TRHLSIIPHQLISGFSKLEVLRLLWCGL 137 (298)
Q Consensus 110 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 137 (298)
| .+..++...+.++++|+.|++++|.+
T Consensus 91 N-~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 91 N-HLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp S-CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred C-ccceeCHHHhccccCCCEEEeCCCCc
Confidence 6 33445544466666666666666665
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.30 E-value=1.8e-11 Score=93.23 Aligned_cols=102 Identities=27% Similarity=0.371 Sum_probs=52.2
Q ss_pred ccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCeeeccCCcccccchh-hcCCCcccEEecc
Q 038877 31 LVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHLDLSWTRIRGLPQE-LKALEKLRYLSLE 108 (298)
Q Consensus 31 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~ 108 (298)
.++++++++.+..+|.. + .++|++|++++| .+..+ |..+..+++|++|++++|.++.++.. +..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~~ip~~-~--~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTG-I--PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSSCCSC-C--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCcc-C--CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 34455555555544443 1 244555555555 44444 33455555555555555555544432 3555555555555
Q ss_pred CCccCCCCchhhhcCCCcccEEEeeccCC
Q 038877 109 GTRHLSIIPHQLISGFSKLEVLRLLWCGL 137 (298)
Q Consensus 109 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 137 (298)
+| .+..++.+.+.++++|+.|++++|.+
T Consensus 87 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 87 DN-QLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CC-ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 55 23344443355566666666666655
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.26 E-value=3e-11 Score=92.34 Aligned_cols=102 Identities=21% Similarity=0.339 Sum_probs=84.8
Q ss_pred ccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCcc-ccCccCCCeeeccCC
Q 038877 9 AKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSG-ISNLVSLHHLDLSWT 87 (298)
Q Consensus 9 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~l~~~ 87 (298)
-+.++++++.+..+|... .++|++|++++|.+..+++..+..+++|++|++++| .+..+|.. +..+++|++|++++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence 468899999888887532 388999999999988776655888999999999999 88888664 678899999999999
Q ss_pred cccccchh-hcCCCcccEEeccCCcc
Q 038877 88 RIRGLPQE-LKALEKLRYLSLEGTRH 112 (298)
Q Consensus 88 ~~~~l~~~-~~~l~~L~~L~l~~~~~ 112 (298)
.++.++.. +..+++|++|++++|..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCc
Confidence 99888765 88899999999998843
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.25 E-value=3.2e-11 Score=91.83 Aligned_cols=104 Identities=20% Similarity=0.283 Sum_probs=86.7
Q ss_pred CccEEEeecCCCcCCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCc-cccCccCCCeeeccC
Q 038877 8 GAKRISLMKTGIQSPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPS-GISNLVSLHHLDLSW 86 (298)
Q Consensus 8 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~ 86 (298)
..+.++++++.++.+|... .++|++|++++|.+..+++..+..+++|++|++++| .+..+|. .+..+++|++|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCC
Confidence 4678999999998887532 488999999999998876665889999999999999 7887765 468899999999999
Q ss_pred Ccccccch-hhcCCCcccEEeccCCccC
Q 038877 87 TRIRGLPQ-ELKALEKLRYLSLEGTRHL 113 (298)
Q Consensus 87 ~~~~~l~~-~~~~l~~L~~L~l~~~~~~ 113 (298)
|.++.++. .+..+++|++|++++|...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 99998875 4888999999999998543
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.22 E-value=3.5e-10 Score=97.98 Aligned_cols=212 Identities=14% Similarity=0.135 Sum_probs=110.7
Q ss_pred cccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCeeeccCCcccccchhhcCCCcccEEecc
Q 038877 30 RLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHLDLSWTRIRGLPQELKALEKLRYLSLE 108 (298)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~ 108 (298)
+|+.+.+..+ +..+...+|..+ +|+.+.+.. .+..+ +.+|..|.+|+.+++..+.++.++.......+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeC
Confidence 5777776554 455555555554 477777664 34444 345666777777777776666666544445667777766
Q ss_pred CCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhcccccc
Q 038877 109 GTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKL 188 (298)
Q Consensus 109 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~ 188 (298)
.+ +..++...+.++++|+.+.+..+ +.. .-...+.. .+|+.+.+.. ....+.. .....
T Consensus 212 ~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~---------------I~~~aF~~-~~L~~i~lp~-~i~~I~~--~aF~~ 269 (401)
T 4fdw_A 212 VT--LKEIGSQAFLKTSQLKTIEIPEN-VST---------------IGQEAFRE-SGITTVKLPN-GVTNIAS--RAFYY 269 (401)
T ss_dssp TT--CCEECTTTTTTCTTCCCEECCTT-CCE---------------ECTTTTTT-CCCSEEEEET-TCCEECT--TTTTT
T ss_pred Cc--hheehhhHhhCCCCCCEEecCCC-ccC---------------cccccccc-CCccEEEeCC-CccEECh--hHhhC
Confidence 44 45555555667777777776543 211 01122222 4566666532 2211111 12334
Q ss_pred ccceeEEEEeccCCC-----CcccccccccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchh
Q 038877 189 LSITQSVGVYFCQSP-----PLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT 263 (298)
Q Consensus 189 ~~~L~~L~l~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 263 (298)
+++|+.+.+.++... .....++.++++|+.+.+.. .+..++...+ .++.+|+.+++.. +++.++
T Consensus 270 c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF--------~~c~~L~~l~lp~--~l~~I~ 338 (401)
T 4fdw_A 270 CPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLL--------GGNRKVTQLTIPA--NVTQIN 338 (401)
T ss_dssp CTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTT--------TTCCSCCEEEECT--TCCEEC
T ss_pred CCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhh--------cCCCCccEEEECc--cccEEc
Confidence 455666666554321 12333455666666666652 2333444444 3556666666643 244442
Q ss_pred --hhhhcCCCcEEEeecC
Q 038877 264 --WLVFAQNLKELRIDSC 279 (298)
Q Consensus 264 --~l~~~~~L~~L~l~~c 279 (298)
....+ +|+.+.+.+.
T Consensus 339 ~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TTSSSSS-CCCEEEECCS
T ss_pred HHhCCCC-CCCEEEEcCC
Confidence 12345 6666666554
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.18 E-value=4.7e-10 Score=97.16 Aligned_cols=239 Identities=11% Similarity=0.106 Sum_probs=162.8
Q ss_pred cccCCCccEEEeecCCCcCCCC--CCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccCCccccCccCCC
Q 038877 3 VEEWEGAKRISLMKTGIQSPSE--IPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKLPSGISNLVSLH 80 (298)
Q Consensus 3 ~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 80 (298)
|.++ +|+.+.+..+ +..++. +.+ .+|+.+.+.. .+..+...+|..|.+|+.+++..+ .+..++...-.+.+|+
T Consensus 132 F~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~ 206 (401)
T 4fdw_A 132 FRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIE 206 (401)
T ss_dssp TTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCS
T ss_pred cccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccC
Confidence 5564 7889988765 555543 234 4799999886 666777777999999999999988 7887766333368899
Q ss_pred eeeccCCcccccc-hhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHh
Q 038877 81 HLDLSWTRIRGLP-QELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKE 159 (298)
Q Consensus 81 ~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (298)
.+.+..+ ++.++ ..+..+++|+.+.+..+ +..++...+.+ .+|+.+.+.. .+. ..-...
T Consensus 207 ~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~-~i~---------------~I~~~a 266 (401)
T 4fdw_A 207 EVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPN-GVT---------------NIASRA 266 (401)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEET-TCC---------------EECTTT
T ss_pred EEEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCC-Ccc---------------EEChhH
Confidence 9999854 66555 45788899999999875 56666666766 6899998854 331 122456
Q ss_pred hcCCCCccEEEEEecCccc--hhhh-ccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhh
Q 038877 160 LLGLKHLNVLSWSLHSSLA--VQKF-LKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEE 236 (298)
Q Consensus 160 l~~l~~L~~l~l~~~~~~~--~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 236 (298)
+..|++|+.+.+..+.... ...+ ......+.+|+.+.+.+. .......++.++++|+.+.+..+ +..++...+
T Consensus 267 F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF-- 342 (401)
T 4fdw_A 267 FYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAF-- 342 (401)
T ss_dssp TTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCCSCCEEEECTT-CCEECTTSS--
T ss_pred hhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhC--
Confidence 7788999999988654420 0011 123445677888888743 44555567888899999999554 444655555
Q ss_pred hhccccccCCcccEEeccCCCCCCchhh--hhhc-CCCcEEEeec
Q 038877 237 VKKLFRSGFRSLNTVSVDYCQKAKDLTW--LVFA-QNLKELRIDS 278 (298)
Q Consensus 237 ~~~~~~~~~~~L~~L~l~~c~~l~~l~~--l~~~-~~L~~L~l~~ 278 (298)
.++ +|+.+++.++ .+..+.. ...+ ..+..|.+..
T Consensus 343 ------~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 343 ------NNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp ------SSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECG
T ss_pred ------CCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCH
Confidence 466 8999999887 4444421 2234 3677777764
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.18 E-value=7.1e-11 Score=99.77 Aligned_cols=82 Identities=5% Similarity=-0.051 Sum_probs=45.0
Q ss_pred hhcCCCCccEEEEEecCccchhhhcccccccccee-EEEEeccCCCCcccccccccccccceecccCCcceeeecchhhh
Q 038877 159 ELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQ-SVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEV 237 (298)
Q Consensus 159 ~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 237 (298)
.|..+++|+.+++..+ ...+.. .....+.+|+ .+.+.+ ........++.++++|+.+++.++.+..++...+
T Consensus 245 aF~~~~~L~~l~l~~n-i~~I~~--~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF--- 317 (329)
T 3sb4_A 245 TFAQKKYLLKIKLPHN-LKTIGQ--RVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELF--- 317 (329)
T ss_dssp TTTTCTTCCEEECCTT-CCEECT--TTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTT---
T ss_pred hhhCCCCCCEEECCcc-cceehH--HHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhh---
Confidence 4445555555555443 111111 1123344455 555554 2334444567777777777777777777665555
Q ss_pred hccccccCCcccEEe
Q 038877 238 KKLFRSGFRSLNTVS 252 (298)
Q Consensus 238 ~~~~~~~~~~L~~L~ 252 (298)
.++++|+.++
T Consensus 318 -----~~~~~L~~ly 327 (329)
T 3sb4_A 318 -----GNGVPSKLIY 327 (329)
T ss_dssp -----CTTCCCCEEE
T ss_pred -----cCCcchhhhc
Confidence 5677777765
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.09 E-value=6e-10 Score=94.72 Aligned_cols=111 Identities=17% Similarity=0.275 Sum_probs=88.3
Q ss_pred CCcc-cCCCccEEEeecC-CCcCCCCCCCCCcccEEEecC-CcccccCchHHhcCCCccEEEccCCcCCccC-CccccCc
Q 038877 1 PKVE-EWEGAKRISLMKT-GIQSPSEIPTCPRLVTFLLDG-NWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNL 76 (298)
Q Consensus 1 ~~~~-~~~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l 76 (298)
|..+ .|.. ..++++++ .+..+|.+..+++|++|+|++ |.+..+++..|..+++|++|++++| .+..+ |..|..+
T Consensus 2 p~~c~~C~~-~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l 79 (347)
T 2ifg_A 2 PDACCPHGS-SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFT 79 (347)
T ss_dssp CSSSCCSSS-SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSC
T ss_pred CCcCccccC-CEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCC
Confidence 4445 5544 45688887 888888887888999999996 8998888766889999999999999 77766 4578899
Q ss_pred cCCCeeeccCCcccccchhhcCCCcccEEeccCCccC
Q 038877 77 VSLHHLDLSWTRIRGLPQELKALEKLRYLSLEGTRHL 113 (298)
Q Consensus 77 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~ 113 (298)
++|++|+|++|.+..+|..+.....|+.|++.+|...
T Consensus 80 ~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 80 PRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred cCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCcc
Confidence 9999999999999988865444444999999888543
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.08 E-value=1.6e-11 Score=105.39 Aligned_cols=157 Identities=15% Similarity=0.127 Sum_probs=78.0
Q ss_pred CCccEEEeecCCCcC-----CCCC--CCCCcccEEEecCCccccc-CchHHhcCCCccEEEccCCcCCccC-----Cccc
Q 038877 7 EGAKRISLMKTGIQS-----PSEI--PTCPRLVTFLLDGNWIEEI-TDGFFRSMSSLRVLSLRRNLALSKL-----PSGI 73 (298)
Q Consensus 7 ~~L~~L~l~~~~~~~-----~~~~--~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~-----p~~~ 73 (298)
+.|+.|++++|.++. +... ..+++|++|++++|.++.. .......+++|+.|++++| .++.. ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHH
Confidence 456666666666554 1111 2335666666666665421 1122334456666666666 55421 1111
Q ss_pred -cCccCCCeeeccCCcccc-----cchhhcCCCcccEEeccCCccCCC----CchhhhcCCCcccEEEeeccCCcccccc
Q 038877 74 -SNLVSLHHLDLSWTRIRG-----LPQELKALEKLRYLSLEGTRHLSI----IPHQLISGFSKLEVLRLLWCGLWSRKEQ 143 (298)
Q Consensus 74 -~~l~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 143 (298)
...++|++|++++|.++. ++..+...++|++|++++|...+. ++. .+...++|+.|++++|.++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~-~L~~~~~L~~L~Ls~N~i~~---- 225 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA-QLDRNRQLQELNVAYNGAGD---- 225 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH-HGGGCSCCCEEECCSSCCCH----
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH-HHhcCCCcCeEECCCCCCCH----
Confidence 134556666666666542 334445566666666666632111 112 14455566666666666532
Q ss_pred ccccccccCchhHHHhhcCCCCccEEEEEecCc
Q 038877 144 EEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSS 176 (298)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~ 176 (298)
.+...+...+...+.|+.|++++|..
T Consensus 226 -------~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 226 -------TAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp -------HHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred -------HHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 00112334444555666666665554
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.02 E-value=3.5e-11 Score=103.20 Aligned_cols=194 Identities=16% Similarity=0.046 Sum_probs=110.3
Q ss_pred CCcccEEEecCCccc-ccCchHHhcCCCccEEEccCCcCCccC-----Ccccc-CccCCCeeeccCCcccc--cchhhcC
Q 038877 28 CPRLVTFLLDGNWIE-EITDGFFRSMSSLRVLSLRRNLALSKL-----PSGIS-NLVSLHHLDLSWTRIRG--LPQELKA 98 (298)
Q Consensus 28 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~-----p~~~~-~l~~L~~L~l~~~~~~~--l~~~~~~ 98 (298)
++..+.+++..|-.+ .-....-.-.+.|+.|++++| .++.. ...+. ...+|++|++++|.++. +......
T Consensus 46 ~~~~~~lnl~~cl~e~~~~~l~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 124 (372)
T 3un9_A 46 LPPSELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPV 124 (372)
T ss_dssp SCHHHHHHHHHHHHHHHTHHHHHHHHTTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHH
T ss_pred CChhhhHHHHHHHHHhcCHHHHHHHHhhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHH
Confidence 444555555555222 001111223466778888888 55522 11222 22578888888887762 2233344
Q ss_pred CCcccEEeccCCccCCCCchhhh-----cCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEe
Q 038877 99 LEKLRYLSLEGTRHLSIIPHQLI-----SGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSL 173 (298)
Q Consensus 99 l~~L~~L~l~~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~ 173 (298)
+++|+.|++++|.. +......+ ...++|+.|++++|.++. .+...+...+..+++|+.|++++
T Consensus 125 L~~L~~L~Ls~n~l-~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~-----------~~~~~l~~~L~~~~~L~~L~Ls~ 192 (372)
T 3un9_A 125 FLRARKLGLQLNSL-GPEACKDLRDLLLHDQCQITTLRLSNNPLTA-----------AGVAVLMEGLAGNTSVTHLSLLH 192 (372)
T ss_dssp HHTEEEEECCSSCC-CHHHHHHHHHHHHSTTCCCCEEECCSSCCHH-----------HHHHHHHHHHHTCSSCCEEECTT
T ss_pred HHhccHhhcCCCCC-CHHHHHHHHHHHHhcCCccceeeCCCCCCCh-----------HHHHHHHHHHhcCCCcCEEeCCC
Confidence 56778888888743 22111112 345778888888887732 11223455667778888888887
Q ss_pred cCccch--hhhccccccccceeEEEEeccCCCCcccc----cccccccccceecccCCcceeeecch
Q 038877 174 HSSLAV--QKFLKYPKLLSITQSVGVYFCQSPPLNVL----HLAYMENLQELVILNSDLEEMKIDSA 234 (298)
Q Consensus 174 ~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~~ 234 (298)
|..... ..+.......+.|+.|++++|...+.... .+...+.|++|++++|.+...++..+
T Consensus 193 N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 193 TGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp SSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 775432 22233333445788888888866443322 24456888888888888766444444
No 146
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.96 E-value=1.1e-09 Score=82.81 Aligned_cols=92 Identities=14% Similarity=0.116 Sum_probs=69.3
Q ss_pred cceeEEEEeccCCCCcccccccccccccceecccCCcce-eeecchhhhhccccccCCcccEEeccCCCCCCch--hhhh
Q 038877 190 SITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEE-MKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDL--TWLV 266 (298)
Q Consensus 190 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l--~~l~ 266 (298)
-.|+.|++++|...+.....+..+++|+.|++++|...+ .++..+... ....++|+.|+|++|+.+++- ..+.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~----~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQL----ENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTC----HHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhc----ccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 457888888887777777778888999999999997555 666665210 001357999999999889884 4567
Q ss_pred hcCCCcEEEeecCcccccc
Q 038877 267 FAQNLKELRIDSCYDVEEI 285 (298)
Q Consensus 267 ~~~~L~~L~l~~c~~l~~~ 285 (298)
.+++|++|+|.+|+.+++.
T Consensus 137 ~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp GCTTCCEEEEESCTTCCCH
T ss_pred cCCCCCEEECCCCCCCCch
Confidence 7899999999999888764
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.90 E-value=5.7e-09 Score=88.64 Aligned_cols=102 Identities=18% Similarity=0.221 Sum_probs=86.6
Q ss_pred cEEEecCC-cccccCchHHhcCCCccEEEccC-CcCCccCC-ccccCccCCCeeeccCCcccccc-hhhcCCCcccEEec
Q 038877 32 VTFLLDGN-WIEEITDGFFRSMSSLRVLSLRR-NLALSKLP-SGISNLVSLHHLDLSWTRIRGLP-QELKALEKLRYLSL 107 (298)
Q Consensus 32 ~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l 107 (298)
..++++++ .+..+|. +..+.+|++|++++ | .+..+| ..|+.+.+|++|+|++|.++.++ ..+..+++|++|++
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 45788888 8888887 88899999999996 8 888776 57999999999999999999766 46899999999999
Q ss_pred cCCccCCCCchhhhcCCCcccEEEeeccCCc
Q 038877 108 EGTRHLSIIPHQLISGFSKLEVLRLLWCGLW 138 (298)
Q Consensus 108 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 138 (298)
++| .+..+|...+..++ |+.|++.+|.+.
T Consensus 88 ~~N-~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 88 SFN-ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSS-CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCC-ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 999 55677776566666 999999999874
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.78 E-value=1.4e-08 Score=86.39 Aligned_cols=165 Identities=16% Similarity=0.197 Sum_probs=94.2
Q ss_pred ccCccCCCeeeccCCcc----------cccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccc
Q 038877 73 ISNLVSLHHLDLSWTRI----------RGLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKE 142 (298)
Q Consensus 73 ~~~l~~L~~L~l~~~~~----------~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 142 (298)
...+++|+.|.+..... ..+...+..+|+|+.|.++++... .++. +. +++|++|.+..+.+
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~--~~-~~~L~~L~L~~~~l----- 205 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK--KP-RPNLKSLEIISGGL----- 205 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS--CB-CTTCSEEEEECSBC-----
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc--cc-CCCCcEEEEecCCC-----
Confidence 34456677776654321 134456677888888888776222 2333 33 77889998888777
Q ss_pred cccccccccCchhHHHhhc--CCCCccEEEEEecCc-----cchhhhccc--cccccceeEEEEeccCCCCcccccc---
Q 038877 143 QEEGSVLYDDAEPLMKELL--GLKHLNVLSWSLHSS-----LAVQKFLKY--PKLLSITQSVGVYFCQSPPLNVLHL--- 210 (298)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~--~l~~L~~l~l~~~~~-----~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l--- 210 (298)
.......+. .+++|+.|+++.+.. ..+..+... ...+++|+.|++.+|...+.....+
T Consensus 206 ----------~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a 275 (362)
T 2ra8_A 206 ----------PDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES 275 (362)
T ss_dssp ----------CHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC
T ss_pred ----------ChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC
Confidence 334444443 678888888864211 011111111 1235678888887775432221222
Q ss_pred cccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCc
Q 038877 211 AYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKD 261 (298)
Q Consensus 211 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 261 (298)
..+|.|+.|+++.|.+...++..+.. ....+++|+.|++++| .+++
T Consensus 276 ~~~~~L~~LdLs~n~L~d~G~~~L~~----~L~~l~~L~~L~L~~n-~i~d 321 (362)
T 2ra8_A 276 DILPQLETMDISAGVLTDEGARLLLD----HVDKIKHLKFINMKYN-YLSD 321 (362)
T ss_dssp SSGGGCSEEECCSSCCBHHHHHHHHT----THHHHTTCSEEECCSB-BCCH
T ss_pred ccCCCCCEEECCCCCCChHHHHHHHh----hcccCCcceEEECCCC-cCCH
Confidence 24678888888777665533333210 0024678888888877 4655
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.66 E-value=5.6e-08 Score=82.75 Aligned_cols=98 Identities=14% Similarity=0.182 Sum_probs=49.1
Q ss_pred CCccEEEeecCCCcC----------CCCCCCCCcccEEEecCCccc----------ccCchHHhcCCCccEEEccCCcCC
Q 038877 7 EGAKRISLMKTGIQS----------PSEIPTCPRLVTFLLDGNWIE----------EITDGFFRSMSSLRVLSLRRNLAL 66 (298)
Q Consensus 7 ~~L~~L~l~~~~~~~----------~~~~~~~~~L~~L~l~~~~~~----------~~~~~~~~~~~~L~~L~l~~~~~~ 66 (298)
.+++.|.+..+.... ......+++|+.|.+...... .+ ..++..+|+|+.|+++++...
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L-~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDL-SPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBC-HHHHHTCTTCCEEEEECCBTC
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCH-HHHHhcCCCCcEEEEeCCCCc
Confidence 456777777554321 011234667777777543221 12 223556677777777665212
Q ss_pred ccCCccccCccCCCeeeccCCcccc-cchhh--cCCCcccEEecc
Q 038877 67 SKLPSGISNLVSLHHLDLSWTRIRG-LPQEL--KALEKLRYLSLE 108 (298)
Q Consensus 67 ~~~p~~~~~l~~L~~L~l~~~~~~~-l~~~~--~~l~~L~~L~l~ 108 (298)
.++. +. +++|++|++..+.+.. ....+ ..+++|++|++.
T Consensus 186 -~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 186 -SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp -BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred -eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 2332 22 5666666666555441 11122 245666666653
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.63 E-value=1e-06 Score=76.04 Aligned_cols=256 Identities=10% Similarity=0.061 Sum_probs=128.5
Q ss_pred cccCC-CccEEEeecCCCcCCC--CCCCCCcccEEEecCCc---ccccCchHHhcCCCccEEEccCCcCCccCC-ccccC
Q 038877 3 VEEWE-GAKRISLMKTGIQSPS--EIPTCPRLVTFLLDGNW---IEEITDGFFRSMSSLRVLSLRRNLALSKLP-SGISN 75 (298)
Q Consensus 3 ~~~~~-~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~~~~ 75 (298)
|.++. .|+.+.+-.+ ++.+. .+.+|.+|+.+.+..+. +..+...+|..+.+|+.+.+..+ +..++ .++..
T Consensus 59 F~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~ 135 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHH 135 (394)
T ss_dssp TTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTT
T ss_pred ccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhh
Confidence 55553 4777777543 44443 33677778887776542 44555555666777766655443 33332 34555
Q ss_pred ccCCCeeeccCCcccccc-hhhcCCCcccEEeccCCccCCCCc----------------------hhhhcCCCcccEEEe
Q 038877 76 LVSLHHLDLSWTRIRGLP-QELKALEKLRYLSLEGTRHLSIIP----------------------HQLISGFSKLEVLRL 132 (298)
Q Consensus 76 l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~----------------------~~~~~~l~~L~~L~l 132 (298)
+.+|+.+.+..+ +..+. ..+..+.+|+.+.+..+ +..+. ...+..+.++.....
T Consensus 136 c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~ 212 (394)
T 4gt6_A 136 CEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITS 212 (394)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEE
T ss_pred hcccccccccce-eeeecccceecccccccccccce--eeEeccccccccceeEEEECCcccccccchhhhccccceecc
Confidence 666666666432 12111 23444445555444332 22222 222344444444433
Q ss_pred eccCCcccccc-----c----------------cccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccccccccc
Q 038877 133 LWCGLWSRKEQ-----E----------------EGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSI 191 (298)
Q Consensus 133 ~~~~~~~~~~~-----~----------------~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~ 191 (298)
........... . ...+.......-...+..+..|+.+.+..... .+.. .....+..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~--~aF~~c~~ 289 (394)
T 4gt6_A 213 DSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVV-SIGT--GAFMNCPA 289 (394)
T ss_dssp CCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCC-EECT--TTTTTCTT
T ss_pred cccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccc-eecC--cccccccc
Confidence 22211100000 0 00000000000123455666677666643211 1111 12234566
Q ss_pred eeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchh--hhhhcC
Q 038877 192 TQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT--WLVFAQ 269 (298)
Q Consensus 192 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~~~ 269 (298)
|+.+.+... .......++.++++|+++.|..+ +..++...+ .++.+|+.+.+.. .++.++ ....|+
T Consensus 290 L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF--------~~C~~L~~i~ip~--sv~~I~~~aF~~C~ 357 (394)
T 4gt6_A 290 LQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQILDDAF--------AGCEQLERIAIPS--SVTKIPESAFSNCT 357 (394)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTT--------TTCTTCCEEEECT--TCCBCCGGGGTTCT
T ss_pred cccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEehHhHh--------hCCCCCCEEEECc--ccCEEhHhHhhCCC
Confidence 677766432 23344456778888888888653 333555555 5788899998864 466653 346788
Q ss_pred CCcEEEeecC
Q 038877 270 NLKELRIDSC 279 (298)
Q Consensus 270 ~L~~L~l~~c 279 (298)
+|+.+.+.+.
T Consensus 358 ~L~~i~~~~~ 367 (394)
T 4gt6_A 358 ALNNIEYSGS 367 (394)
T ss_dssp TCCEEEESSC
T ss_pred CCCEEEECCc
Confidence 9999988764
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.59 E-value=3.1e-07 Score=79.33 Aligned_cols=216 Identities=15% Similarity=0.141 Sum_probs=139.8
Q ss_pred CCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCeeeccCCcccccchhhcCCCcc
Q 038877 24 EIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHLDLSWTRIRGLPQELKALEKL 102 (298)
Q Consensus 24 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L 102 (298)
.+..|.+|+.+.+..+ +..+...+|..+.+|+.+++..+ +..+ ..++.++..|+.+.+..+.. .+........+|
T Consensus 157 aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~-~i~~~~~~~~~l 232 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLY-YLGDFALSKTGV 232 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCC-EECTTTTTTCCC
T ss_pred hhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCce-EeehhhcccCCC
Confidence 3478899999998755 34566667889999999988765 4444 34688888999888776432 233344455678
Q ss_pred cEEeccCCccCCCCchhhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccchhhh
Q 038877 103 RYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKF 182 (298)
Q Consensus 103 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~ 182 (298)
+.+.+... ...+....+.++.+++.+.+..+... .....+..+..++.+....... .
T Consensus 233 ~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~~----------------i~~~~F~~~~~l~~~~~~~~~i---~-- 289 (394)
T 4fs7_A 233 KNIIIPDS--FTELGKSVFYGCTDLESISIQNNKLR----------------IGGSLFYNCSGLKKVIYGSVIV---P-- 289 (394)
T ss_dssp CEEEECTT--CCEECSSTTTTCSSCCEEEECCTTCE----------------ECSCTTTTCTTCCEEEECSSEE---C--
T ss_pred ceEEECCC--ceecccccccccccceeEEcCCCcce----------------eeccccccccccceeccCceee---c--
Confidence 88887654 34555555788889999888765331 1223455666777665543211 1
Q ss_pred ccccccccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCch
Q 038877 183 LKYPKLLSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDL 262 (298)
Q Consensus 183 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l 262 (298)
......+..|+.+.+... .......++.++++|+++++..+ +..++...+ .++.+|+.+++... ++.+
T Consensus 290 ~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF--------~~c~~L~~i~lp~~--l~~I 357 (394)
T 4fs7_A 290 EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSF--------RGCTSLSNINFPLS--LRKI 357 (394)
T ss_dssp TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTT--------TTCTTCCEECCCTT--CCEE
T ss_pred cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhc--------cCCCCCCEEEECcc--ccEe
Confidence 112334566777777543 23344456778888888888643 444555555 56788888888653 6665
Q ss_pred h--hhhhcCCCcEEEeec
Q 038877 263 T--WLVFAQNLKELRIDS 278 (298)
Q Consensus 263 ~--~l~~~~~L~~L~l~~ 278 (298)
+ ....|++|+.+.+..
T Consensus 358 ~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 358 GANAFQGCINLKKVELPK 375 (394)
T ss_dssp CTTTBTTCTTCCEEEEEG
T ss_pred hHHHhhCCCCCCEEEECC
Confidence 3 346688888888864
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.55 E-value=4.6e-08 Score=75.30 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=80.9
Q ss_pred CCCCcccEEEecCC-cccc----cCchHHhcCCCccEEEccCCcCCcc-----CCccccCccCCCeeeccCCcccc----
Q 038877 26 PTCPRLVTFLLDGN-WIEE----ITDGFFRSMSSLRVLSLRRNLALSK-----LPSGISNLVSLHHLDLSWTRIRG---- 91 (298)
Q Consensus 26 ~~~~~L~~L~l~~~-~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~-----~p~~~~~l~~L~~L~l~~~~~~~---- 91 (298)
...+.|++|++++| .++. .....+...++|++|++++| .+.. +...+...++|++|++++|.+..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 67888999999998 8862 11223666788999999999 6652 34455666789999999998872
Q ss_pred -cchhhcCCCcccEEec--cCCccCCC----CchhhhcCCCcccEEEeeccCCc
Q 038877 92 -LPQELKALEKLRYLSL--EGTRHLSI----IPHQLISGFSKLEVLRLLWCGLW 138 (298)
Q Consensus 92 -l~~~~~~l~~L~~L~l--~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~ 138 (298)
+...+...++|++|++ ++|..... +.. .+...++|++|++++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCCCC
Confidence 4566778888999999 66743322 222 2556788999999999873
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.54 E-value=2e-06 Score=74.25 Aligned_cols=196 Identities=14% Similarity=0.059 Sum_probs=105.6
Q ss_pred ccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCeeeccCCcccccc-hhhcCCCcccEEeccCCccCCCCchhh
Q 038877 43 EITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHLDLSWTRIRGLP-QELKALEKLRYLSLEGTRHLSIIPHQL 120 (298)
Q Consensus 43 ~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~ 120 (298)
.+...+|..+.+|+.+.+..+ +..+ ...|..+.+|+.+.+..+ ++.++ ..+..+..|+.+.+..+ ...+...
T Consensus 152 ~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~- 225 (394)
T 4fs7_A 152 VIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS--LYYLGDF- 225 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTT-
T ss_pred ccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC--ceEeehh-
Confidence 344445777888888888665 2333 346777788888877664 34333 34667777777776554 2222222
Q ss_pred hcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEecc
Q 038877 121 ISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFC 200 (298)
Q Consensus 121 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 200 (298)
.....+|+.+.+..... ..-...+..+..++.+.+..+... +. ......+..++.+.....
T Consensus 226 ~~~~~~l~~i~ip~~~~----------------~i~~~~f~~~~~l~~~~~~~~~~~-i~--~~~F~~~~~l~~~~~~~~ 286 (394)
T 4fs7_A 226 ALSKTGVKNIIIPDSFT----------------ELGKSVFYGCTDLESISIQNNKLR-IG--GSLFYNCSGLKKVIYGSV 286 (394)
T ss_dssp TTTTCCCCEEEECTTCC----------------EECSSTTTTCSSCCEEEECCTTCE-EC--SCTTTTCTTCCEEEECSS
T ss_pred hcccCCCceEEECCCce----------------ecccccccccccceeEEcCCCcce-ee--ccccccccccceeccCce
Confidence 34455677777654321 011234456677777777543221 11 111223344455544332
Q ss_pred CCCCcccccccccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchh--hhhhcCCCcEEEee
Q 038877 201 QSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT--WLVFAQNLKELRID 277 (298)
Q Consensus 201 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~~~~L~~L~l~ 277 (298)
. ....++..+.+|+.+.+.++ +..++...+ .++.+|+.+++.+ .++.++ ....|.+|+.+.+.
T Consensus 287 ~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF--------~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 287 I---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAF--------ESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp E---ECTTTTTTCTTCCEEEECTT-CCEECTTTT--------TTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCC
T ss_pred e---eccccccccccccccccccc-cceechhhh--------cCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEEC
Confidence 1 22234566777777777543 333444444 4667788887754 355543 23456666666554
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.48 E-value=6.6e-06 Score=70.99 Aligned_cols=106 Identities=13% Similarity=0.181 Sum_probs=78.9
Q ss_pred CCC-CcccEEEecCCcccccCchHHhcCCCccEEEccCCc--CCccCC-ccccCccCCCeeeccCCcccccc-hhhcCCC
Q 038877 26 PTC-PRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNL--ALSKLP-SGISNLVSLHHLDLSWTRIRGLP-QELKALE 100 (298)
Q Consensus 26 ~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~p-~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~ 100 (298)
..+ ..|+.+.+-.. +..+...+|..|.+|+.+.+..+. .+..+. .+|..+.+|+.+.+..+ ++.++ ..+..+.
T Consensus 60 ~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~ 137 (394)
T 4gt6_A 60 CNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCE 137 (394)
T ss_dssp TTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCT
T ss_pred cCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhc
Confidence 456 45999998754 667777789999999999998761 244553 47888999999887654 44444 4578899
Q ss_pred cccEEeccCCccCCCCchhhhcCCCcccEEEeecc
Q 038877 101 KLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWC 135 (298)
Q Consensus 101 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 135 (298)
+|+.+.+... ...+....+..+.+|+.+.+..+
T Consensus 138 ~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 138 ELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp TCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT
T ss_pred ccccccccce--eeeecccceecccccccccccce
Confidence 9999999764 45666666888899998888653
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.42 E-value=1.6e-07 Score=72.17 Aligned_cols=120 Identities=13% Similarity=0.102 Sum_probs=86.3
Q ss_pred hHHhcCCCccEEEccCCcCCc-----cCCccccCccCCCeeeccCCccc-----ccchhhcCCCcccEEeccCCccCCC-
Q 038877 47 GFFRSMSSLRVLSLRRNLALS-----KLPSGISNLVSLHHLDLSWTRIR-----GLPQELKALEKLRYLSLEGTRHLSI- 115 (298)
Q Consensus 47 ~~~~~~~~L~~L~l~~~~~~~-----~~p~~~~~l~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~- 115 (298)
..+...+.|++|++++|..+. .+...+...++|++|++++|.+. .+...+...++|++|++++|.....
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 346778889999998873343 23445666788999999999877 2445566778899999998844322
Q ss_pred ---CchhhhcCCCcccEEEe--eccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccc
Q 038877 116 ---IPHQLISGFSKLEVLRL--LWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLA 178 (298)
Q Consensus 116 ---~~~~~~~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~ 178 (298)
+.. .+...++|++|++ ++|.+.. .+...+...+...+.|+.|+++++....
T Consensus 110 ~~~l~~-~L~~n~~L~~L~L~~~~N~i~~-----------~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 110 ILALVE-ALQSNTSLIELRIDNQSQPLGN-----------NVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHH-GGGGCSSCCEEECCCCSSCCCH-----------HHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHH-HHHhCCCceEEEecCCCCCCCH-----------HHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 223 2566778999999 7788743 2244588888888899999999887653
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.30 E-value=7.4e-07 Score=67.24 Aligned_cols=100 Identities=12% Similarity=0.080 Sum_probs=60.7
Q ss_pred cccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEEEecCccchhhhccccccccceeEEEEeccCCCCc
Q 038877 126 KLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHSSLAVQKFLKYPKLLSITQSVGVYFCQSPPL 205 (298)
Q Consensus 126 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 205 (298)
+|+.|++++|.+ ...-...+..+++|+.|++++|...+...
T Consensus 62 ~L~~LDLs~~~I---------------td~GL~~L~~~~~L~~L~L~~C~~ItD~g------------------------ 102 (176)
T 3e4g_A 62 KIQAIDATDSCI---------------MSIGFDHMEGLQYVEKIRLCKCHYIEDGC------------------------ 102 (176)
T ss_dssp CEEEEEEESCCC---------------CGGGGGGGTTCSCCCEEEEESCTTCCHHH------------------------
T ss_pred eEeEEeCcCCCc---------------cHHHHHHhcCCCCCCEEEeCCCCccCHHH------------------------
Confidence 577777777765 23334445566666666666654332222
Q ss_pred ccccccc----cccccceecccCCcce-eeecchhhhhccccccCCcccEEeccCCCCCCchh----hh-hhcCCCcE
Q 038877 206 NVLHLAY----MENLQELVILNSDLEE-MKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT----WL-VFAQNLKE 273 (298)
Q Consensus 206 ~~~~l~~----l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~----~l-~~~~~L~~ 273 (298)
...+.. .++|++|++++|...+ .++..+ ..+++|++|++++|+.+++.. .+ ..+|+++.
T Consensus 103 -L~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L--------~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 103 -LERLSQLENLQKSMLEMEIISCGNVTDKGIIAL--------HHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp -HHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG--------GGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred -HHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH--------hcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 222332 2467777777776444 555555 468899999999999898853 12 45777653
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.05 E-value=0.00033 Score=59.87 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=47.2
Q ss_pred ccceeEEEEeccCCCCcccccccccccccceecccCCcceeeecchhhhhccccccCCcccEEeccCCCCCCchh--hhh
Q 038877 189 LSITQSVGVYFCQSPPLNVLHLAYMENLQELVILNSDLEEMKIDSAEEVKKLFRSGFRSLNTVSVDYCQKAKDLT--WLV 266 (298)
Q Consensus 189 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~ 266 (298)
+..++.+.+... .......++.++++|+.+.+.++.+..++...+ .++.+|+.+++.. .++.++ ...
T Consensus 262 ~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF--------~~c~~L~~i~lp~--~l~~I~~~aF~ 330 (379)
T 4h09_A 262 CTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVF--------MDCVKLSSVTLPT--ALKTIQVYAFK 330 (379)
T ss_dssp CTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTT--------TTCTTCCEEECCT--TCCEECTTTTT
T ss_pred eehhcccccccc-ceeccccccccccccccccccccccceehhhhh--------cCCCCCCEEEcCc--cccEEHHHHhh
Confidence 444555555432 222333456677888888887776666655555 5678888888864 355553 235
Q ss_pred hcCCCcEEEee
Q 038877 267 FAQNLKELRID 277 (298)
Q Consensus 267 ~~~~L~~L~l~ 277 (298)
.|.+|+.+.+.
T Consensus 331 ~C~~L~~i~ip 341 (379)
T 4h09_A 331 NCKALSTISYP 341 (379)
T ss_dssp TCTTCCCCCCC
T ss_pred CCCCCCEEEEC
Confidence 56777776664
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.04 E-value=1.1e-05 Score=65.43 Aligned_cols=104 Identities=25% Similarity=0.248 Sum_probs=69.4
Q ss_pred CCCCcccE--EEecCCcccccC---chHHhcCCCccEEEccCCcCCccC---CccccCccCCCeeeccCCcccccchhhc
Q 038877 26 PTCPRLVT--FLLDGNWIEEIT---DGFFRSMSSLRVLSLRRNLALSKL---PSGISNLVSLHHLDLSWTRIRGLPQELK 97 (298)
Q Consensus 26 ~~~~~L~~--L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~---p~~~~~l~~L~~L~l~~~~~~~l~~~~~ 97 (298)
...+.|.. ++++.|....++ ......+++|+.|++++| .+..+ |..+..+++|+.|+|++|.+..+. .+.
T Consensus 138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~ 215 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELD 215 (267)
T ss_dssp GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGG
T ss_pred CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCch-hhh
Confidence 33445555 555666433222 222467889999999999 77654 455667899999999999888663 233
Q ss_pred CCC--cccEEeccCCccCCCCc------hhhhcCCCcccEEE
Q 038877 98 ALE--KLRYLSLEGTRHLSIIP------HQLISGFSKLEVLR 131 (298)
Q Consensus 98 ~l~--~L~~L~l~~~~~~~~~~------~~~~~~l~~L~~L~ 131 (298)
.+. +|+.|++.+|...+.+| ..++..+|+|+.|+
T Consensus 216 ~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 216 KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 334 89999999886555444 12467888888887
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.01 E-value=6.9e-06 Score=66.52 Aligned_cols=112 Identities=24% Similarity=0.186 Sum_probs=71.6
Q ss_pred HhcCCCccE--EEccCCcCCccCCc----cccCccCCCeeeccCCcccccc---hhhcCCCcccEEeccCCccCCCCch-
Q 038877 49 FRSMSSLRV--LSLRRNLALSKLPS----GISNLVSLHHLDLSWTRIRGLP---QELKALEKLRYLSLEGTRHLSIIPH- 118 (298)
Q Consensus 49 ~~~~~~L~~--L~l~~~~~~~~~p~----~~~~l~~L~~L~l~~~~~~~l~---~~~~~l~~L~~L~l~~~~~~~~~~~- 118 (298)
+...+.|.. ++++.| ....++. ...++++|+.|+|++|.+..++ ..+..+++|+.|++++|.. ..+..
T Consensus 137 l~~dp~L~~~~l~l~~N-~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i-~~~~~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLN-RRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL-KSEREL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTT-SHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCC-CSGGGG
T ss_pred cCCCcchhhcCccccCC-HHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCcc-CCchhh
Confidence 444455554 556666 4444332 2246789999999999888544 5677899999999999854 44322
Q ss_pred hhhcCCCcccEEEeeccCCccccccccccccccCchhHHHhhcCCCCccEEEE
Q 038877 119 QLISGFSKLEVLRLLWCGLWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSW 171 (298)
Q Consensus 119 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l 171 (298)
..+..+ +|+.|++.+|.+..... .........+..+++|+.|+-
T Consensus 215 ~~l~~l-~L~~L~L~~Npl~~~~~--------~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 215 DKIKGL-KLEELWLDGNSLCDTFR--------DQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GGGTTS-CCSEEECTTSTTGGGCS--------SHHHHHHHHHHHCTTCCEESS
T ss_pred hhcccC-CcceEEccCCcCccccC--------cchhHHHHHHHHCcccCeECC
Confidence 113344 89999999999843100 001234466667788888764
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.60 E-value=0.00025 Score=60.58 Aligned_cols=103 Identities=15% Similarity=0.278 Sum_probs=50.4
Q ss_pred CCCCcccEEEecCCcccccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCeeeccCCcccccc-hhhcCCCccc
Q 038877 26 PTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHLDLSWTRIRGLP-QELKALEKLR 103 (298)
Q Consensus 26 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~ 103 (298)
..+..|+.+.+..+ +..+...++..+..|+.+.+..+ +..+ ..++.++.+|+.+.+..+ +..++ ..+..+++|+
T Consensus 214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred ccccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 44555555555433 22333333555566666655443 2333 224555555666555432 33332 2345555666
Q ss_pred EEeccCCccCCCCchhhhcCCCcccEEEee
Q 038877 104 YLSLEGTRHLSIIPHQLISGFSKLEVLRLL 133 (298)
Q Consensus 104 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 133 (298)
.+.+.++ .+..++...+.++.+|+.+.+.
T Consensus 290 ~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 290 KVVMDNS-AIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp EEEECCT-TCCEECTTTTTTCTTCCEEECC
T ss_pred ccccccc-ccceehhhhhcCCCCCCEEEcC
Confidence 6655543 2344444445566666666654
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.19 E-value=0.00033 Score=53.72 Aligned_cols=110 Identities=14% Similarity=0.080 Sum_probs=72.1
Q ss_pred CCCCcccEEEecCC-cccc----cCchHHhcCCCccEEEccCCcCCc-----cCCccccCccCCCeeeccCCccc-----
Q 038877 26 PTCPRLVTFLLDGN-WIEE----ITDGFFRSMSSLRVLSLRRNLALS-----KLPSGISNLVSLHHLDLSWTRIR----- 90 (298)
Q Consensus 26 ~~~~~L~~L~l~~~-~~~~----~~~~~~~~~~~L~~L~l~~~~~~~-----~~p~~~~~l~~L~~L~l~~~~~~----- 90 (298)
..-+.|++|+++++ .+++ ....++..-..|+.|++++| .+. .+...+..-..|++|+|++|.+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 45677888888875 7762 11223666778888888888 665 23344555577889999888877
Q ss_pred ccchhhcCCCcccEEeccCCcc--CCC-----CchhhhcCCCcccEEEeeccCC
Q 038877 91 GLPQELKALEKLRYLSLEGTRH--LSI-----IPHQLISGFSKLEVLRLLWCGL 137 (298)
Q Consensus 91 ~l~~~~~~l~~L~~L~l~~~~~--~~~-----~~~~~~~~l~~L~~L~l~~~~~ 137 (298)
.+.+.+..-+.|+.|+++++.. ++. +.. .+..=+.|+.|+++.+..
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCCc
Confidence 2345566667799999876521 221 112 244556788888887765
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.79 E-value=0.0024 Score=48.95 Aligned_cols=117 Identities=15% Similarity=0.083 Sum_probs=80.6
Q ss_pred hHHhcCCCccEEEccCCcCCc-----cCCccccCccCCCeeeccCCccc-----ccchhhcCCCcccEEeccCCccCCC-
Q 038877 47 GFFRSMSSLRVLSLRRNLALS-----KLPSGISNLVSLHHLDLSWTRIR-----GLPQELKALEKLRYLSLEGTRHLSI- 115 (298)
Q Consensus 47 ~~~~~~~~L~~L~l~~~~~~~-----~~p~~~~~l~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~- 115 (298)
.....-+.|+.|+++++..+. .+..++..-..|+.|+|++|.+. .+.+.+..-+.|+.|+++.|.....
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 335667889999999852554 23455666688999999999887 4556677788999999999954322
Q ss_pred ---CchhhhcCCCcccEEEeeccC---CccccccccccccccCchhHHHhhcCCCCccEEEEEecC
Q 038877 116 ---IPHQLISGFSKLEVLRLLWCG---LWSRKEQEEGSVLYDDAEPLMKELLGLKHLNVLSWSLHS 175 (298)
Q Consensus 116 ---~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~ 175 (298)
+.. .+..-+.|+.|+++++. +.. .....+...+..-+.|+.++++.+.
T Consensus 115 a~ala~-aL~~N~tL~~L~L~n~~~~~ig~-----------~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 115 LARLLR-STLVTQSIVEFKADNQRQSVLGN-----------QVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHH-HTTTTCCCSEEECCCCSSCCCCH-----------HHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHH-HHhhCCceeEEECCCCcCcCcCH-----------HHHHHHHHHHHhCCCcCeEeccCCC
Confidence 112 14455669999998653 321 1123466778778889999887554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.44 E-value=0.0087 Score=42.60 Aligned_cols=52 Identities=19% Similarity=0.307 Sum_probs=31.7
Q ss_pred EEEeecCCCc--CCCCCCCCCcccEEEecCCcccccCchHHhcCCCccEEEccCC
Q 038877 11 RISLMKTGIQ--SPSEIPTCPRLVTFLLDGNWIEEITDGFFRSMSSLRVLSLRRN 63 (298)
Q Consensus 11 ~L~l~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 63 (298)
.++.+++.++ .+|.. -.++|++|+|++|.+..++..+|..+++|++|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 5666666665 55522 1235666677777666666655666666666666666
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.59 E-value=0.02 Score=40.67 Aligned_cols=54 Identities=20% Similarity=0.268 Sum_probs=27.9
Q ss_pred eeeccCCccc--ccchhhcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEeeccCC
Q 038877 81 HLDLSWTRIR--GLPQELKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLLWCGL 137 (298)
Q Consensus 81 ~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 137 (298)
.++.+++.++ .+|..+ -++|++|++++| .+..++.+.+..+++|+.|++.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCe
Confidence 3444444444 444321 124555666555 34555555556666666666666654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=66.61 E-value=6.2 Score=26.13 Aligned_cols=42 Identities=19% Similarity=0.295 Sum_probs=20.3
Q ss_pred ccCchHHhcCCCccEEEccCCcCCccC-CccccCccCCCeeeccC
Q 038877 43 EITDGFFRSMSSLRVLSLRRNLALSKL-PSGISNLVSLHHLDLSW 86 (298)
Q Consensus 43 ~~~~~~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~ 86 (298)
.+...+|..|.+|+.+.+-.+ ++.+ ..+|.+|.+|+.+.+.+
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECC
T ss_pred EecHHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcC
Confidence 444444555555555555443 2223 22455555555555544
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=56.88 E-value=12 Score=24.62 Aligned_cols=36 Identities=19% Similarity=0.344 Sum_probs=16.8
Q ss_pred hcCCCcccEEeccCCccCCCCchhhhcCCCcccEEEee
Q 038877 96 LKALEKLRYLSLEGTRHLSIIPHQLISGFSKLEVLRLL 133 (298)
Q Consensus 96 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 133 (298)
|..+++|+.+.+..+ +..+....+.+|.+|+.+.+.
T Consensus 16 F~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 16 FAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEEC
T ss_pred hcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEc
Confidence 444445555544443 333433345555555555554
Done!