BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038880
(276 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OQ4|A Chain A, The Crystal Structure Of The Complex Between Stearoyl Acyl
Carrier Protein Desaturase From Ricinus Communis (Castor
Bean) And Azide.
pdb|1OQ4|B Chain B, The Crystal Structure Of The Complex Between Stearoyl Acyl
Carrier Protein Desaturase From Ricinus Communis (Castor
Bean) And Azide.
pdb|1OQ4|C Chain C, The Crystal Structure Of The Complex Between Stearoyl Acyl
Carrier Protein Desaturase From Ricinus Communis (Castor
Bean) And Azide.
pdb|1OQ4|D Chain D, The Crystal Structure Of The Complex Between Stearoyl Acyl
Carrier Protein Desaturase From Ricinus Communis (Castor
Bean) And Azide.
pdb|1OQ4|E Chain E, The Crystal Structure Of The Complex Between Stearoyl Acyl
Carrier Protein Desaturase From Ricinus Communis (Castor
Bean) And Azide.
pdb|1OQ4|F Chain F, The Crystal Structure Of The Complex Between Stearoyl Acyl
Carrier Protein Desaturase From Ricinus Communis (Castor
Bean) And Azide.
pdb|1OQ7|A Chain A, The Crystal Structure Of The Iron Free (apo-)form Of
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (castor Bean).
pdb|1OQ7|B Chain B, The Crystal Structure Of The Iron Free (apo-)form Of
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (castor Bean).
pdb|1OQ7|C Chain C, The Crystal Structure Of The Iron Free (apo-)form Of
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (castor Bean).
pdb|1OQ7|D Chain D, The Crystal Structure Of The Iron Free (apo-)form Of
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (castor Bean).
pdb|1OQ7|E Chain E, The Crystal Structure Of The Iron Free (apo-)form Of
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (castor Bean).
pdb|1OQ7|F Chain F, The Crystal Structure Of The Iron Free (apo-)form Of
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (castor Bean).
pdb|1OQ9|A Chain A, The Crystal Structure Of The Complex Between Stearoyl Acyl
Carrier Protein Desaturase From Ricinus Communis (Castor
Bean) And Acetate.
pdb|1OQB|A Chain A, The Crystal Structure Of The One-iron Form Of The Di-iron
Center In Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (castor Bean).
pdb|1OQB|B Chain B, The Crystal Structure Of The One-iron Form Of The Di-iron
Center In Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (castor Bean).
pdb|1OQB|C Chain C, The Crystal Structure Of The One-iron Form Of The Di-iron
Center In Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (castor Bean).
pdb|1OQB|D Chain D, The Crystal Structure Of The One-iron Form Of The Di-iron
Center In Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (castor Bean).
pdb|1OQB|E Chain E, The Crystal Structure Of The One-iron Form Of The Di-iron
Center In Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (castor Bean).
pdb|1OQB|F Chain F, The Crystal Structure Of The One-iron Form Of The Di-iron
Center In Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (castor Bean).
pdb|2XZ0|A Chain A, The Structure Of The 2:1 (Partially Occupied) Complex
Between Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (Castor Bean) And Acyl Carrier Protein.
pdb|2XZ0|B Chain B, The Structure Of The 2:1 (Partially Occupied) Complex
Between Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (Castor Bean) And Acyl Carrier Protein.
pdb|2XZ0|C Chain C, The Structure Of The 2:1 (Partially Occupied) Complex
Between Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (Castor Bean) And Acyl Carrier Protein.
pdb|2XZ1|A Chain A, The Structure Of The 2:2 (Fully Occupied) Complex Between
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (Castor Bean) And Acyl Carrier Protein.
pdb|2XZ1|B Chain B, The Structure Of The 2:2 (Fully Occupied) Complex Between
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (Castor Bean) And Acyl Carrier Protein
Length = 363
Score = 433 bits (1113), Expect = e-122, Method: Compositional matrix adjust.
Identities = 207/291 (71%), Positives = 240/291 (82%), Gaps = 17/291 (5%)
Query: 1 GFYEQVKELRERCKQLPAEYFVVLVGDMITEEALPTYQTMLNTIDGVRDETGASLTSWAT 60
GF EQV+ELRER K++P +YFVVLVGDMITEEALPTYQTMLNT+DGVRDETGAS TSWA
Sbjct: 75 GFDEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAI 134
Query: 61 WIR---------------YLYLSGCVDMKQIERSIQYLIRSGMDPKFENNPYNGFIYTSF 105
W R YLYLSG VDM+QIE++IQYLI SGMDP+ EN+PY GFIYTSF
Sbjct: 135 WTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSF 194
Query: 106 QERATFISHGNTARLAKEHGDMKLAQICGVIASDEKRHELAYTKIVEKLFEIDPDDAILA 165
QERATFISHGNTAR AKEHGD+KLAQICG IA+DEKRHE AYTKIVEKLFEIDPD +LA
Sbjct: 195 QERATFISHGNTARQAKEHGDIKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDGTVLA 254
Query: 166 LAGMMKKTIKMPAHLMYDGQNDKIFYHFSAVAQRLGVYTAKDYADILAFLIERWEVEKLM 225
A MM+K I MPAHLMYDG++D +F HFSAVAQRLGVYTAKDYADIL FL+ RW+V+KL
Sbjct: 255 FADMMRKKISMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGRWKVDKLT 314
Query: 226 GLTSEGRKARDFVCGLPSRIRRLEDKAQANMAKKACSTVPFSWVFGKDIRV 276
GL++EG+KA+D+VC LP RIRRLE++AQ K T+PFSW+F + +++
Sbjct: 315 GLSAEGQKAQDYVCRLPPRIRRLEERAQGRA--KEAPTMPFSWIFDRQVKL 363
>pdb|1AFR|A Chain A, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|B Chain B, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|C Chain C, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|D Chain D, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|E Chain E, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|F Chain F, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
Length = 345
Score = 432 bits (1111), Expect = e-121, Method: Compositional matrix adjust.
Identities = 207/291 (71%), Positives = 240/291 (82%), Gaps = 17/291 (5%)
Query: 1 GFYEQVKELRERCKQLPAEYFVVLVGDMITEEALPTYQTMLNTIDGVRDETGASLTSWAT 60
GF EQV+ELRER K++P +YFVVLVGDMITEEALPTYQTMLNT+DGVRDETGAS TSWA
Sbjct: 57 GFDEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAI 116
Query: 61 WIR---------------YLYLSGCVDMKQIERSIQYLIRSGMDPKFENNPYNGFIYTSF 105
W R YLYLSG VDM+QIE++IQYLI SGMDP+ EN+PY GFIYTSF
Sbjct: 117 WTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSF 176
Query: 106 QERATFISHGNTARLAKEHGDMKLAQICGVIASDEKRHELAYTKIVEKLFEIDPDDAILA 165
QERATFISHGNTAR AKEHGD+KLAQICG IA+DEKRHE AYTKIVEKLFEIDPD +LA
Sbjct: 177 QERATFISHGNTARQAKEHGDIKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDGTVLA 236
Query: 166 LAGMMKKTIKMPAHLMYDGQNDKIFYHFSAVAQRLGVYTAKDYADILAFLIERWEVEKLM 225
A MM+K I MPAHLMYDG++D +F HFSAVAQRLGVYTAKDYADIL FL+ RW+V+KL
Sbjct: 237 FADMMRKKISMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGRWKVDKLT 296
Query: 226 GLTSEGRKARDFVCGLPSRIRRLEDKAQANMAKKACSTVPFSWVFGKDIRV 276
GL++EG+KA+D+VC LP RIRRLE++AQ K T+PFSW+F + +++
Sbjct: 297 GLSAEGQKAQDYVCRLPPRIRRLEERAQGRA--KEAPTMPFSWIFDRQVKL 345
>pdb|2J2F|A Chain A, The T199d Mutant Of Stearoyl Acyl Carrier Protein
Desaturase From Ricinus Communis (Castor Bean)
pdb|2J2F|B Chain B, The T199d Mutant Of Stearoyl Acyl Carrier Protein
Desaturase From Ricinus Communis (Castor Bean)
pdb|2J2F|C Chain C, The T199d Mutant Of Stearoyl Acyl Carrier Protein
Desaturase From Ricinus Communis (Castor Bean)
pdb|2J2F|D Chain D, The T199d Mutant Of Stearoyl Acyl Carrier Protein
Desaturase From Ricinus Communis (Castor Bean)
pdb|2J2F|E Chain E, The T199d Mutant Of Stearoyl Acyl Carrier Protein
Desaturase From Ricinus Communis (Castor Bean)
pdb|2J2F|F Chain F, The T199d Mutant Of Stearoyl Acyl Carrier Protein
Desaturase From Ricinus Communis (Castor Bean)
Length = 363
Score = 430 bits (1106), Expect = e-121, Method: Compositional matrix adjust.
Identities = 206/291 (70%), Positives = 239/291 (82%), Gaps = 17/291 (5%)
Query: 1 GFYEQVKELRERCKQLPAEYFVVLVGDMITEEALPTYQTMLNTIDGVRDETGASLTSWAT 60
GF EQV+ELRER K++P +YFVVLVGDMITEEALPTYQTMLNT+DGVRDETGAS TSWA
Sbjct: 75 GFDEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAI 134
Query: 61 WIR---------------YLYLSGCVDMKQIERSIQYLIRSGMDPKFENNPYNGFIYTSF 105
W R YLYLSG VDM+QIE++IQYLI SGMDP+ EN+PY GFIYTSF
Sbjct: 135 WTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSF 194
Query: 106 QERATFISHGNTARLAKEHGDMKLAQICGVIASDEKRHELAYTKIVEKLFEIDPDDAILA 165
QERA FISHGNTAR AKEHGD+KLAQICG IA+DEKRHE AYTKIVEKLFEIDPD +LA
Sbjct: 195 QERADFISHGNTARQAKEHGDIKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDGTVLA 254
Query: 166 LAGMMKKTIKMPAHLMYDGQNDKIFYHFSAVAQRLGVYTAKDYADILAFLIERWEVEKLM 225
A MM+K I MPAHLMYDG++D +F HFSAVAQRLGVYTAKDYADIL FL+ RW+V+KL
Sbjct: 255 FADMMRKKISMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGRWKVDKLT 314
Query: 226 GLTSEGRKARDFVCGLPSRIRRLEDKAQANMAKKACSTVPFSWVFGKDIRV 276
GL++EG+KA+D+VC LP RIRRLE++AQ K T+PFSW+F + +++
Sbjct: 315 GLSAEGQKAQDYVCRLPPRIRRLEERAQGRA--KEAPTMPFSWIFDRQVKL 363
>pdb|2UW1|A Chain A, Ivy Desaturase Structure
Length = 338
Score = 383 bits (983), Expect = e-107, Method: Compositional matrix adjust.
Identities = 183/291 (62%), Positives = 225/291 (77%), Gaps = 17/291 (5%)
Query: 1 GFYEQVKELRERCKQLPAEYFVVLVGDMITEEALPTYQTMLNTIDGVRDETGASLTSWAT 60
GF EQV+ELRER K++P +YFVVLVGDMITEEALPTY +MLN DG++DETGA ++WA
Sbjct: 50 GFEEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYMSMLNRCDGIKDETGAEPSAWAM 109
Query: 61 WIR---------------YLYLSGCVDMKQIERSIQYLIRSGMDPKFENNPYNGFIYTSF 105
W R YLYLSG VDM++IE++IQYLI SGMD K EN+PY GFIYTSF
Sbjct: 110 WTRAWTAEENRHGDLLNKYLYLSGRVDMRKIEKTIQYLIGSGMDIKSENSPYLGFIYTSF 169
Query: 106 QERATFISHGNTARLAKEHGDMKLAQICGVIASDEKRHELAYTKIVEKLFEIDPDDAILA 165
QERATFISH NTA+LA+ +GD KLA ICG IASDEKRH AYTKIVEKL EIDPD ++A
Sbjct: 170 QERATFISHANTAKLAQHYGDKKLAHICGSIASDEKRHATAYTKIVEKLAEIDPDTTVIA 229
Query: 166 LAGMMKKTIKMPAHLMYDGQNDKIFYHFSAVAQRLGVYTAKDYADILAFLIERWEVEKLM 225
A MM+K I MPAHLMYDG ++ +F HF+AVAQRLGVY+A DY DIL FL+++W VE+L
Sbjct: 230 FADMMRKKITMPAHLMYDGSDELLFKHFTAVAQRLGVYSALDYCDILEFLVDKWNVERLT 289
Query: 226 GLTSEGRKARDFVCGLPSRIRRLEDKAQANMAKKACSTVPFSWVFGKDIRV 276
GL+ EGRKA+++VC L +IRRLE++AQ K T+PFSW+F + +++
Sbjct: 290 GLSDEGRKAQEYVCELGPKIRRLEERAQGR--AKEAPTMPFSWIFDRQVKL 338
>pdb|2UW1|B Chain B, Ivy Desaturase Structure
Length = 338
Score = 378 bits (971), Expect = e-105, Method: Compositional matrix adjust.
Identities = 181/291 (62%), Positives = 223/291 (76%), Gaps = 17/291 (5%)
Query: 1 GFYEQVKELRERCKQLPAEYFVVLVGDMITEEALPTYQTMLNTIDGVRDETGASLTSWAT 60
GF EQV+ELRER K++P +YFVVLVGDMITEEALPTY +MLN DG++DETGA ++WA
Sbjct: 50 GFEEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYMSMLNRCDGIKDETGAEPSAWAM 109
Query: 61 WIR---------------YLYLSGCVDMKQIERSIQYLIRSGMDPKFENNPYNGFIYTSF 105
W R YLYLSG VDM++IE++IQYLI SGMD K EN+PY GFIYTSF
Sbjct: 110 WTRAWTAEENRHGDLLNKYLYLSGRVDMRKIEKTIQYLIGSGMDIKSENSPYLGFIYTSF 169
Query: 106 QERATFISHGNTARLAKEHGDMKLAQICGVIASDEKRHELAYTKIVEKLFEIDPDDAILA 165
QERATFISH NTA+LA+ GD LA ICG IASDEKRH AYTKIVEKL EIDPD ++A
Sbjct: 170 QERATFISHANTAKLAQHWGDKNLAHICGSIASDEKRHATAYTKIVEKLAEIDPDTTVIA 229
Query: 166 LAGMMKKTIKMPAHLMYDGQNDKIFYHFSAVAQRLGVYTAKDYADILAFLIERWEVEKLM 225
A MM+K I MPAHLMYDG ++ +F HF+AVAQR+GVY+A DY DIL FL+++W VE+L
Sbjct: 230 FADMMRKKITMPAHLMYDGSDELLFKHFTAVAQRVGVYSALDYCDILEFLVDKWNVERLT 289
Query: 226 GLTSEGRKARDFVCGLPSRIRRLEDKAQANMAKKACSTVPFSWVFGKDIRV 276
GL+ EGRKA+++VC L +IRRLE++AQ K T+PFSW+F + +++
Sbjct: 290 GLSDEGRKAQEYVCELGPKIRRLEERAQGR--AKEAPTMPFSWIFDRQVKL 338
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 188 KIFYHFSAVAQRLGVYTAKDYADILAFLIERWEVEKLMGLTS--EGRKARDFVCGLPSRI 245
K FYH +RL + + LAF R E EK G+ EG+ A +F+ LP ++
Sbjct: 312 KTFYHLEKARERLAY--EELFVLQLAFQKIRKEREKHGGIPKKIEGKLAEEFIKSLPFKL 369
Query: 246 RRLEDKAQANMAKKACSTVPFSWVFGKDI 274
+ +A + S P + + D+
Sbjct: 370 TNAQKRAHQEIRNDMISEKPMNRLLQGDV 398
>pdb|3NVA|A Chain A, Dimeric Form Of Ctp Synthase From Sulfolobus Solfataricus
pdb|3NVA|B Chain B, Dimeric Form Of Ctp Synthase From Sulfolobus Solfataricus
Length = 535
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 4 EQVKEL-RERCKQLPAEYFVVLVGDMITE-EALPTYQTMLNTIDGVRDETGASLTSWA-- 59
+Q+K++ R K AE +V +G + + E+LP L + ++ E G +
Sbjct: 121 DQIKDMIRYASKINNAEITLVEIGGTVGDIESLP----FLEAVRQLKLEEGEDNVIFVHI 176
Query: 60 TWIRYLYLSGCVDMKQIERSIQYLIRSGMDPKF 92
+ YL ++G + K ++ S+Q L R G+ P F
Sbjct: 177 ALVEYLSVTGELKTKPLQHSVQELRRIGIQPDF 209
>pdb|3FPK|A Chain A, Crystal Structure Of Ferredoxin-Nadp Reductase From
Salmonella Typhimurium
pdb|3FPK|B Chain B, Crystal Structure Of Ferredoxin-Nadp Reductase From
Salmonella Typhimurium
Length = 251
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 215 LIERWEVEKLMGLTSEGRKARDFVCGLPSRIR 246
LIE E+EK +GL + + +CG P +R
Sbjct: 191 LIENGELEKAVGLPMDKETSHVMLCGNPQMVR 222
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,304,479
Number of Sequences: 62578
Number of extensions: 329976
Number of successful extensions: 680
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 664
Number of HSP's gapped (non-prelim): 9
length of query: 276
length of database: 14,973,337
effective HSP length: 97
effective length of query: 179
effective length of database: 8,903,271
effective search space: 1593685509
effective search space used: 1593685509
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)