BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038881
(794 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 422 bits (1085), Expect = e-118, Method: Compositional matrix adjust.
Identities = 260/666 (39%), Positives = 367/666 (55%), Gaps = 61/666 (9%)
Query: 138 TTHSWEFLG----LERNGRVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIP 193
TT SW+FLG + R +VESN ++G LDTG+WPES SF DEG P P
Sbjct: 1 TTRSWDFLGFPLTVPRRSQVESN-----------IVVGVLDTGIWPESPSFDDEGFSPPP 49
Query: 194 SKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAG 253
KWKG CE + F CNRK+IGAR ++ G + G +N PRD +GHGTHT STA
Sbjct: 50 PKWKGTCETSNN--FRCNRKIIGARSYHIGRPISPGDVNG----PRDTNGHGTHTASTAA 103
Query: 254 GNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAI-HXXXX 312
G V++A+++GLG GTA+GG P AR+AAYKVCW + C D DILAA+D AI
Sbjct: 104 GGLVSQANLYGLGLGTARGGVPLARIAAYKVCW----NDGCSDTDILAAYDDAIADGVDI 159
Query: 313 XXXXXXXXXPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGAST 372
P +F D+ AIGSFHAV+ G++ SAGN GP T ++++PW ++V AST
Sbjct: 160 ISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAAST 219
Query: 373 MDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISXXXXXXXXXSTEVALLCEAGTLD 432
MDR F + V + N + ++G S+++ N+ +PL+S + C +++
Sbjct: 220 MDRKFVTQVQIGNGQSFQGVSINTF---DNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVN 276
Query: 433 PKKVKGKILVCLRGDNARIDKGQQXXXXXXXXXXXXXXQENGNELLADPHLLPASHINFT 492
P +KGKI+VC G N + AD + LP+S ++
Sbjct: 277 PNLLKGKIVVC------EASFGPHEFFKSLDGAAGVLMTSNTRD-YADSYPLPSSVLDPN 329
Query: 493 DGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVT 552
D R + S + P + ++TT L AP++ +FSS+GP+ +++KPDI+ PGV
Sbjct: 330 DLLATLRYIYSIRSPGATIFKSTTILNAS-APVVVSFSSRGPNRATKDVIKPDISGPGVE 388
Query: 553 IIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIM 612
I+AA+ A P RR FN +SGTSMSCPH++GI +KT +P WSPAAIKSA+M
Sbjct: 389 ILAAWPSVA-PVGG--IRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALM 445
Query: 613 TTASIQDNNKGQILNASSYKATPFSYGAGHIQPNLAMDPGLVYDLTENDYLNFLCALGYN 672
TTAS +NA F+YG+GH+ P A+ PGLVYD E+DY+ FLC GYN
Sbjct: 446 TTAS--------PMNARFNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYN 497
Query: 673 KTQIALFSDKTYRCPEYVS--TANFNYPSITV---PKLSGSIIVSRTVRNVG-SPGTYIA 726
+ + C + + NYPS + P + + +RT+ +V TY A
Sbjct: 498 TQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRA 557
Query: 727 RVRNPKGISVSVEPRSLKFLRVGEEKNFKVTIKVRKVRAATKDYVF-GDLVWADDKQHQV 785
+ P+G+++SV P L F +G+ K+F +T VR + K +V LVW+ D H V
Sbjct: 558 MISAPQGLTISVNPNVLSFNGLGDRKSFTLT-----VRGSIKGFVVSASLVWS-DGVHYV 611
Query: 786 RSPIVV 791
RSPI +
Sbjct: 612 RSPITI 617
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 343 bits (879), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 233/670 (34%), Positives = 343/670 (51%), Gaps = 40/670 (5%)
Query: 138 TTHSWEFLGLERNGRVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWK 197
TTH+ +FL L S+ +W + G+D I+ LD+G+WPES SF D+G+ IP +WK
Sbjct: 1 TTHTSDFLKLN-----PSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWK 55
Query: 198 GICE-NDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNF 256
GIC+ + +CNRKLIGA YFNKG A +N + ++ RD DGHGTH S GNF
Sbjct: 56 GICKPGTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNF 115
Query: 257 VAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNE-CYDADILAAFDMAIHXXXXXXX 315
S FG GTA+G +P+AR+A YK + NE + +D++AA D A+
Sbjct: 116 AKGVSHFGYAPGTARGVAPRARLAVYKFSF-----NEGTFTSDLIAAMDQAVADGVDMIS 170
Query: 316 XXXXXXPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDR 375
+ D+ +I SF A+ G++V SAGN GP +++N +PW + V + DR
Sbjct: 171 ISYGYRFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDR 230
Query: 376 DFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISXXXXXXXXXSTEVALLCEAGTLDPKK 435
F + + N + +G SL P+ + LL + +
Sbjct: 231 TFAGTLTLGNGLKIRGWSL----FPARAFVRDSPVIYNKTLSDCSSEELLSQV-----EN 281
Query: 436 VKGKILVCLRGDNARIDKGQQXXXXXXXXXXXXXXQENGNELLADPHLLPASHINFTDGA 495
+ I++C DN Q E+ + P +N +G
Sbjct: 282 PENTIVIC--DDNGDFSD-QMRIITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGK 338
Query: 496 DLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIA 555
+ V ++ P +T T L KPAP++AA S++GPS I KPDI APGV I+A
Sbjct: 339 QVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILA 398
Query: 556 AYTEAAGPTNEDYD-RRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTT 614
AY T+ + + SGTSM+ PH +GI +LK HPEWSP+AI+SA+MTT
Sbjct: 399 AYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTT 458
Query: 615 ASIQDNNKGQILNASSYK-ATPFSYGAGHIQPNLAMDPGLVYDLTENDYLNFLCALGYNK 673
A DN + I ++ + K ATP GAGH+ PN A+DPGLVYD T DY+N LC+L + +
Sbjct: 459 ADPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTE 518
Query: 674 TQIALF--SDKTYRCPEYVSTANFNYPS-ITVPKLSGSIIV-----SRTVRNVGS-PGTY 724
Q S ++ C +A+ NYPS I + + G+ + RTV NVG TY
Sbjct: 519 EQFKTIARSSASHNCSN--PSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATY 576
Query: 725 IARVRNPKGISVSVEPRSLKFLRVGEEKNFKVTIKVRKVRAATKDYVFGDLVWADDK-QH 783
A+++ PK ++SV P+ L F E++++ +TI+ +++ G + W + H
Sbjct: 577 KAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRN--VGSITWVEQNGNH 634
Query: 784 QVRSPIVVNP 793
VRSPIV +P
Sbjct: 635 SVRSPIVTSP 644
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 56/96 (58%), Gaps = 12/96 (12%)
Query: 525 IMAAFSSKGPSSVAPEILKPDITAPGVTIIAAY---TEAAGPTNEDYDRRRIPFNALSGT 581
++ FSS+GP+ A LKP++ APG IIAA T P N DY + A GT
Sbjct: 308 VITDFSSRGPT--ADNRLKPEVVAPGNWIIAARASGTSMGQPIN-DY------YTAAPGT 358
Query: 582 SMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASI 617
+M+ PHV+GI LL HP W+P +K+A++ TA I
Sbjct: 359 AMATPHVAGIAALLLQAHPSWTPDKVKTALIETADI 394
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 59/140 (42%), Gaps = 16/140 (11%)
Query: 237 TPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYD 296
TP D +GHGTH S A G A G KG +P A++ KV +G+
Sbjct: 173 TPYDDNGHGTHVASIAAGTGAAS-------NGKYKGMAPGAKLVGIKVLNGQGSGSIS-- 223
Query: 297 ADILAAFDMAIHXX----XXXXXXXXXXXPSKFFNDSTAIGSFHAVKHGMVVICSAGNSG 352
DI+ D A+ S DS + +A G+VV+ +AGNSG
Sbjct: 224 -DIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVNNAWDAGLVVVVAAGNSG 282
Query: 353 PTDSTVSNIAPWQ--ITVGA 370
P TV + A ITVGA
Sbjct: 283 PNKYTVGSPAAASKVITVGA 302
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 94/195 (48%), Gaps = 30/195 (15%)
Query: 432 DPKKVKGKILVCLRGDNARIDKGQQXXXXXXXXXXXXXXQENGNEL-LADPHLLPASHIN 490
D K VKGKI + RGD DK Q+ G + L + +PA+ I+
Sbjct: 284 DFKDVKGKIALIERGDIDFKDKIANAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFIS 343
Query: 491 FTDGADLFRDVNSTKRPVGYLTRATTE-LGLKPAPIMAAFSSKGPSSVAPEILKPDITAP 549
DG L +D ++K+ + + AT + L ++ FSS G + A +KPDI AP
Sbjct: 344 RKDGL-LLKD--NSKKTITF--NATPKVLPTASDTKLSRFSSWGLT--ADGNIKPDIAAP 396
Query: 550 GVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLK----TLHPEWSPA 605
G I+++ N Y + LSGTSMS P V+GI+GLL+ T +P+ +P+
Sbjct: 397 GQDILSSVA------NNKYAK-------LSGTSMSAPLVAGIMGLLQKQYETQYPDMTPS 443
Query: 606 A----IKSAIMTTAS 616
K +M++A+
Sbjct: 444 ERLDLAKKVLMSSAT 458
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 16/82 (19%)
Query: 535 SSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGL 594
SSV PE+ D+ APGV+I + P + + ALSGTSM+ PHV+G L
Sbjct: 181 SSVGPEL---DVMAPGVSICSTL-----PGGK--------YGALSGTSMASPHVAGAAAL 224
Query: 595 LKTLHPEWSPAAIKSAIMTTAS 616
+ + HP W+ ++S++ TA+
Sbjct: 225 ILSKHPNWTNTQVRSSLENTAT 246
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 30/109 (27%)
Query: 535 SSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGL 594
SSV PE+ D+ APGV+I + P N+ + A SGTSM+ PHV+G L
Sbjct: 190 SSVGPEL---DVMAPGVSIXSTL-----PGNK--------YGAYSGTSMASPHVAGAAAL 233
Query: 595 LKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHI 643
+ + HP W+ ++S++ N ++Y F YG G I
Sbjct: 234 ILSKHPNWTNTQVRSSLE--------------NTTTYLGDSFYYGKGLI 268
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 16/80 (20%)
Query: 535 SSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGL 594
SSV PE+ D+ APGV+I + P N+ + A SGTSM+ PHV+G L
Sbjct: 190 SSVGPEL---DVMAPGVSIXSTL-----PGNK--------YGAYSGTSMASPHVAGAAAL 233
Query: 595 LKTLHPEWSPAAIKSAIMTT 614
+ + HP W+ ++S++ T
Sbjct: 234 ILSKHPNWTNTQVRSSLENT 253
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 16/80 (20%)
Query: 535 SSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGL 594
SSV PE+ D+ APGV+I++ P N+ + A SGT+M+ PHV+G L
Sbjct: 181 SSVGPEL---DVMAPGVSIVSTL-----PGNK--------YGAKSGTAMASPHVAGAAAL 224
Query: 595 LKTLHPEWSPAAIKSAIMTT 614
+ + HP W+ ++S++ T
Sbjct: 225 ILSKHPNWTNTQVRSSLENT 244
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 16/82 (19%)
Query: 535 SSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGL 594
SSV PE+ D+ APGV+I + P + + ALSGT+M+ PHV+G L
Sbjct: 181 SSVGPEL---DVMAPGVSICSTL-----PGGK--------YGALSGTAMASPHVAGAAAL 224
Query: 595 LKTLHPEWSPAAIKSAIMTTAS 616
+ + HP W+ ++S++ TA+
Sbjct: 225 ILSKHPNWTNTQVRSSLENTAT 246
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 16/80 (20%)
Query: 535 SSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGL 594
SSV PE+ D+ APGV+I++ P N+ + A SGT+M+ PHV+G L
Sbjct: 181 SSVGPEL---DVMAPGVSIVSTL-----PGNK--------YGAKSGTAMASPHVAGAAAL 224
Query: 595 LKTLHPEWSPAAIKSAIMTT 614
+ + HP W+ ++S++ T
Sbjct: 225 ILSKHPNWTNTQVRSSLENT 244
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 16/80 (20%)
Query: 535 SSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGL 594
SSV PE+ D+ APGV+I ++ P N+ + A +GTSM+ PHV+G L
Sbjct: 190 SSVGPEL---DVMAPGVSI-----QSTLPGNK--------YGAYNGTSMASPHVAGAAAL 233
Query: 595 LKTLHPEWSPAAIKSAIMTT 614
+ + HP W+ ++S++ T
Sbjct: 234 ILSKHPNWTNTQVRSSLQNT 253
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 16/80 (20%)
Query: 535 SSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGL 594
SSV PE+ D+ APGV+I ++ P N+ + A +GTSM+ PHV+G L
Sbjct: 190 SSVGPEL---DVMAPGVSI-----QSTLPGNK--------YGAYNGTSMASPHVAGAAAL 233
Query: 595 LKTLHPEWSPAAIKSAIMTT 614
+ + HP W+ ++S++ T
Sbjct: 234 ILSKHPNWTNTQVRSSLQNT 253
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 16/80 (20%)
Query: 535 SSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGL 594
SSV PE+ D+ APGV+I + P N+ + A SGTSM+ PHV+G L
Sbjct: 190 SSVGPEL---DVMAPGVSICSTL-----PGNK--------YGAKSGTSMASPHVAGAAAL 233
Query: 595 LKTLHPEWSPAAIKSAIMTT 614
+ + HP W+ ++S++ T
Sbjct: 234 ILSKHPNWTNTQVRSSLENT 253
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 16/80 (20%)
Query: 535 SSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGL 594
SSV PE+ D+ APGV+I + P N+ + A SGTSM+ PHV+G L
Sbjct: 181 SSVGPEL---DVMAPGVSICSTL-----PGNK--------YGAKSGTSMASPHVAGAAAL 224
Query: 595 LKTLHPEWSPAAIKSAIMTT 614
+ + HP W+ ++S++ T
Sbjct: 225 ILSKHPNWTNTQVRSSLENT 244
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 16/80 (20%)
Query: 535 SSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGL 594
SSV PE+ D+ APGV+I + P N+ + A SGTSM+ PHV+G L
Sbjct: 181 SSVGPEL---DVMAPGVSICSTL-----PGNK--------YGAKSGTSMASPHVAGAAAL 224
Query: 595 LKTLHPEWSPAAIKSAIMTT 614
+ + HP W+ ++S++ T
Sbjct: 225 ILSKHPNWTNTQVRSSLENT 244
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 16/80 (20%)
Query: 535 SSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGL 594
SSV PE+ D+ APGV+I + P N+ + A SGTSM+ PHV+G L
Sbjct: 190 SSVGPEL---DVMAPGVSICSTL-----PGNK--------YGAKSGTSMASPHVAGAAAL 233
Query: 595 LKTLHPEWSPAAIKSAIMTT 614
+ + HP W+ ++S++ T
Sbjct: 234 ILSKHPNWTNTQVRSSLENT 253
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 16/80 (20%)
Query: 535 SSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGL 594
SSV PE+ D+ APGV+I ++ P N+ + A SGTSM+ PHV+G L
Sbjct: 190 SSVGPEL---DVMAPGVSI-----QSTLPGNK--------YGAKSGTSMASPHVAGAAAL 233
Query: 595 LKTLHPEWSPAAIKSAIMTT 614
+ + HP W+ ++S++ T
Sbjct: 234 ILSKHPNWTNTQVRSSLENT 253
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 16/80 (20%)
Query: 535 SSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGL 594
SSV PE+ D+ APGV+I ++ P N+ + A +GTSM+ PHV+G L
Sbjct: 190 SSVGPEL---DVMAPGVSI-----QSTLPGNK--------YGAYNGTSMASPHVAGAAAL 233
Query: 595 LKTLHPEWSPAAIKSAIMTT 614
+ + HP W+ ++S++ T
Sbjct: 234 ILSKHPNWTNTQVRSSLENT 253
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 16/80 (20%)
Query: 535 SSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGL 594
SSV PE+ D+ APGV+I ++ P N+ + A +GTSM+ PHV+G L
Sbjct: 190 SSVGPEL---DVMAPGVSI-----QSTLPGNK--------YGAYNGTSMASPHVAGAAAL 233
Query: 595 LKTLHPEWSPAAIKSAIMTT 614
+ + HP W+ ++S++ T
Sbjct: 234 ILSKHPNWTNTQVRSSLENT 253
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 16/80 (20%)
Query: 535 SSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGL 594
SSV PE+ D+ APGV+I ++ P N+ + A +GTSM+ PHV+G L
Sbjct: 190 SSVGPEL---DVMAPGVSI-----QSTLPGNK--------YGAYNGTSMASPHVAGAAAL 233
Query: 595 LKTLHPEWSPAAIKSAIMTT 614
+ + HP W+ ++S++ T
Sbjct: 234 ILSKHPNWTNTQVRSSLENT 253
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 16/80 (20%)
Query: 535 SSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGL 594
SSV PE+ D+ APGV+I ++ P N+ + A SGT M+ PHV+G L
Sbjct: 190 SSVGPEL---DVMAPGVSI-----QSTLPGNK--------YGAYSGTXMASPHVAGAAAL 233
Query: 595 LKTLHPEWSPAAIKSAIMTT 614
+ + HP W+ ++S++ T
Sbjct: 234 ILSKHPNWTNTQVRSSLENT 253
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 16/80 (20%)
Query: 535 SSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGL 594
SSV PE+ D+ APGV+I ++ P N+ + A SGT M+ PHV+G L
Sbjct: 190 SSVGPEL---DVMAPGVSI-----QSTLPGNK--------YGAYSGTXMASPHVAGAAAL 233
Query: 595 LKTLHPEWSPAAIKSAIMTT 614
+ + HP W+ ++S++ T
Sbjct: 234 ILSKHPNWTNTQVRSSLENT 253
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 16/80 (20%)
Query: 535 SSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGL 594
SSV PE+ D+ APGV+I ++ P N+ + A SGT M+ PHV+G L
Sbjct: 190 SSVGPEL---DVMAPGVSI-----QSTLPGNK--------YGAKSGTXMASPHVAGAAAL 233
Query: 595 LKTLHPEWSPAAIKSAIMTT 614
+ + HP W+ ++S++ T
Sbjct: 234 ILSKHPNWTNTQVRSSLENT 253
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 16/80 (20%)
Query: 535 SSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGL 594
SSV PE+ D+ APGV+I + P N+ + A SGT M+ PHV+G L
Sbjct: 181 SSVGPEL---DVMAPGVSICSTL-----PGNK--------YGAKSGTXMASPHVAGAAAL 224
Query: 595 LKTLHPEWSPAAIKSAIMTT 614
+ + HP W+ ++S++ T
Sbjct: 225 ILSKHPNWTNTQVRSSLENT 244
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 16/80 (20%)
Query: 535 SSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGL 594
SSV PE+ D+ APGV+I ++ P N+ + A +GT M+ PHV+G L
Sbjct: 190 SSVGPEL---DVMAPGVSI-----QSTLPGNK--------YGAYNGTXMASPHVAGAAAL 233
Query: 595 LKTLHPEWSPAAIKSAIMTT 614
+ + HP W+ ++S++ T
Sbjct: 234 ILSKHPNWTNTQVRSSLENT 253
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 16/80 (20%)
Query: 535 SSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGL 594
SSV PE+ D+ APGV+I ++ P N+ + A +GT M+ PHV+G L
Sbjct: 190 SSVGPEL---DVMAPGVSI-----QSTLPGNK--------YGAYNGTXMASPHVAGAAAL 233
Query: 595 LKTLHPEWSPAAIKSAIMTT 614
+ + HP W+ ++S++ T
Sbjct: 234 ILSKHPNWTNTQVRSSLENT 253
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 16/80 (20%)
Query: 535 SSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGL 594
SSV PE+ D+ APGV+I + P N+ + A SGT M+ PHV+G L
Sbjct: 178 SSVGPEL---DVMAPGVSIWSTL-----PGNK--------YGAKSGTXMASPHVAGAAAL 221
Query: 595 LKTLHPEWSPAAIKSAIMTT 614
+ + HP W+ ++S++ T
Sbjct: 222 ILSKHPNWTNTQVRSSLENT 241
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 13/72 (18%)
Query: 545 DITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSP 604
DI APGV + + Y + + +L+GTSM+ PHV+G+ L+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGVAALVKQKNPSWSN 237
Query: 605 AAIKSAIMTTAS 616
I++ + TA+
Sbjct: 238 VQIRNHLKNTAT 249
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 16/80 (20%)
Query: 535 SSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGL 594
SSV PE+ D+ APGV+I ++ P N+ + A +GTS + PHV+G L
Sbjct: 190 SSVGPEL---DVMAPGVSI-----QSTLPGNK--------YGAYNGTSXASPHVAGAAAL 233
Query: 595 LKTLHPEWSPAAIKSAIMTT 614
+ + HP W+ ++S++ T
Sbjct: 234 ILSKHPNWTNTQVRSSLENT 253
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 24/106 (22%)
Query: 545 DITAPGVTI-----------IAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVG 593
DIT P V++ + T + N+DY+ +GTSM+ PHVSG+
Sbjct: 328 DITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEY-------YNGTSMATPHVSGVAT 380
Query: 594 LLKTLHPEWSPAAIKSAIMTTA-----SIQDNNKGQ-ILNASSYKA 633
L+ + HPE S + +++A+ TA + +DN G ++NA + KA
Sbjct: 381 LVWSYHPECSASQVRAALNATADDLSVAGRDNQTGYGMINAVAAKA 426
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 41/120 (34%)
Query: 527 AAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIP---FNALSGTSM 583
A+FSS G + D+ APGV+I + +P + A +GTSM
Sbjct: 187 ASFSSAGS--------ELDVMAPGVSI----------------QSTLPGGTYGAYNGTSM 222
Query: 584 SCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHI 643
+ PHV+G L+ + HP W+ A ++ + +TA +Y + F YG G I
Sbjct: 223 ATPHVAGAAALILSKHPTWTNAQVRDRLESTA--------------TYLGSSFYYGKGLI 268
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 13/72 (18%)
Query: 545 DITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSP 604
DI APGV + + Y + + +L+GTSM+ PHV+G L+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 605 AAIKSAIMTTAS 616
I++ + TA+
Sbjct: 238 VQIRNHLKNTAT 249
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 13/72 (18%)
Query: 545 DITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSP 604
DI APGV + + Y + + +L+GTSM+ PHV+G L+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 605 AAIKSAIMTTAS 616
I++ + TA+
Sbjct: 238 VQIRNHLKNTAT 249
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 13/72 (18%)
Query: 545 DITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSP 604
DI APGV + + Y G T + +L+GTSM+ PHV+G L+K +P WS
Sbjct: 191 DIVAPGVNVQSTYP---GST----------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 605 AAIKSAIMTTAS 616
I++ + TA+
Sbjct: 238 VQIRNHLKNTAT 249
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 13/72 (18%)
Query: 545 DITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSP 604
DI APGV + + Y + + +L+GTSM+ PHV+G L+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 605 AAIKSAIMTTAS 616
I++ + TA+
Sbjct: 238 VQIRNHLKNTAT 249
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 13/72 (18%)
Query: 545 DITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSP 604
DI APGV + + Y + + +L+GTSM+ PHV+G L+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 605 AAIKSAIMTTAS 616
I++ + TA+
Sbjct: 238 VQIRNHLKNTAT 249
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 30/110 (27%)
Query: 535 SSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGL 594
SSV E+ ++ APG + + Y PTN + L+GTSM+ PHV+G L
Sbjct: 190 SSVGAEL---EVMAPGAGVYSTY-----PTNT--------YATLNGTSMASPHVAGAAAL 233
Query: 595 LKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQ 644
+ + HP S + +++ + +TA +Y + F YG G I
Sbjct: 234 ILSKHPNLSASQVRNRLSSTA--------------TYLGSSFYYGKGLIN 269
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 30/110 (27%)
Query: 535 SSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGL 594
SSV E+ ++ APG + + Y PTN + L+GTSM+ PHV+G L
Sbjct: 190 SSVGAEL---EVMAPGAGVYSTY-----PTNT--------YATLNGTSMASPHVAGAAAL 233
Query: 595 LKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQ 644
+ + HP S + +++ + +TA +Y + F YG G I
Sbjct: 234 ILSKHPNLSASQVRNRLSSTA--------------TYLGSSFYYGKGLIN 269
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 30/110 (27%)
Query: 535 SSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGL 594
SSV E+ ++ APG + + Y PTN + L+GTSM+ PHV+G L
Sbjct: 189 SSVGAEL---EVMAPGAGVYSTY-----PTNT--------YATLNGTSMASPHVAGAAAL 232
Query: 595 LKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQ 644
+ + HP S + +++ + +TA +Y + F YG G I
Sbjct: 233 ILSKHPNLSASQVRNRLSSTA--------------TYLGSSFYYGKGLIN 268
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 30/110 (27%)
Query: 535 SSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGL 594
SSV E+ ++ APG + + Y PTN + L+GTSM+ PHV+G L
Sbjct: 189 SSVGAEL---EVMAPGAGVYSTY-----PTNT--------YATLNGTSMASPHVAGAAAL 232
Query: 595 LKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQ 644
+ + HP S + +++ + +TA +Y + F YG G I
Sbjct: 233 ILSKHPNLSASQVRNRLSSTA--------------TYLGSSFYYGKGLIN 268
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 30/109 (27%)
Query: 535 SSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGL 594
SSV E+ ++ APG + + Y PTN + L+GTSM+ PHV+G L
Sbjct: 189 SSVGAEL---EVMAPGAGVYSTY-----PTNT--------YATLNGTSMASPHVAGAAAL 232
Query: 595 LKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHI 643
+ + HP S + +++ + +TA +Y + F YG G I
Sbjct: 233 ILSKHPNLSASQVRNRLSSTA--------------TYLGSSFYYGKGLI 267
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 30/110 (27%)
Query: 535 SSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGL 594
SSV E+ ++ APG + + Y PTN + L+GTSM+ PHV+G L
Sbjct: 189 SSVGAEL---EVMAPGAGVYSTY-----PTNT--------YATLNGTSMASPHVAGAAAL 232
Query: 595 LKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQ 644
+ + HP S + +++ + +TA +Y + F YG G I
Sbjct: 233 ILSKHPNLSASQVRNRLSSTA--------------TYLGSSFYYGKGLIN 268
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 22/90 (24%)
Query: 535 SSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIP---FNALSGTSMSCPHVSGI 591
SSV E+ D+ APGV+I + +P + A +GT M+ PHV+G
Sbjct: 190 SSVGSEL---DVMAPGVSI----------------QSTLPGGTYGAYNGTXMATPHVAGA 230
Query: 592 VGLLKTLHPEWSPAAIKSAIMTTASIQDNN 621
L+ + HP W+ A ++ + +TA+ N+
Sbjct: 231 AALILSKHPTWTNAQVRDRLESTATYLGNS 260
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 16/82 (19%)
Query: 535 SSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGL 594
SSV E+ ++ APGV++ + Y P+N + +L+GTSM+ PHV+G L
Sbjct: 189 SSVGSEL---EVMAPGVSVYSTY-----PSNT--------YTSLNGTSMASPHVAGAAAL 232
Query: 595 LKTLHPEWSPAAIKSAIMTTAS 616
+ + +P S + +++ + +TA+
Sbjct: 233 ILSKYPTLSASQVRNRLSSTAT 254
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 432 DPKKVKGKILVCLRGDNARIDKGQQXXXXXXXXXXXXXXQENGNEL-LADPHLLPASHIN 490
D K VKGKI + RGD DK + Q+ G + L + PA+ I+
Sbjct: 275 DFKDVKGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQXPAAFIS 334
Query: 491 FTDGADLFRDVNSTKRPVGYLTRATTELGLKPAP--IMAAFSSKGPSSVAPEILKPDITA 548
DG L +D P +T T L A ++ FSS G + A +KPDI A
Sbjct: 335 RKDGL-LLKD-----NPQKTITFNATPKVLPTASGTKLSRFSSWGLT--ADGNIKPDIAA 386
Query: 549 PGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLK----TLHPEWSP 604
PG I+++ N Y + LSGTS S P V+GI GLL+ T +P+ +P
Sbjct: 387 PGQDILSSVA------NNKYAK-------LSGTSXSAPLVAGIXGLLQKQYETQYPDXTP 433
Query: 605 A 605
+
Sbjct: 434 S 434
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 13/72 (18%)
Query: 545 DITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSP 604
DI APGV + + Y + + +L+GT M+ PHV+G L+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 605 AAIKSAIMTTAS 616
I++ + TA+
Sbjct: 238 VQIRNHLKNTAT 249
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 13/72 (18%)
Query: 545 DITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSP 604
DI APGV + + Y G T + +L+GT M+ PHV+G L+K +P WS
Sbjct: 191 DIVAPGVNVQSTYP---GST----------YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 605 AAIKSAIMTTAS 616
I++ + TA+
Sbjct: 238 VQIRNHLKNTAT 249
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 13/72 (18%)
Query: 545 DITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSP 604
DI APGV + + Y + + +L+GT M+ PHV+G L+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 605 AAIKSAIMTTAS 616
I++ + TA+
Sbjct: 238 VQIRNHLKNTAT 249
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 30/110 (27%)
Query: 535 SSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGL 594
SSV E+ ++ APG + + Y PTN + L+GT M+ PHV+G L
Sbjct: 189 SSVGAEL---EVMAPGAGVYSTY-----PTNT--------YATLNGTXMASPHVAGAAAL 232
Query: 595 LKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQ 644
+ + HP S + +++ + +TA +Y + F YG G I
Sbjct: 233 ILSKHPNLSASQVRNRLSSTA--------------TYLGSSFYYGKGLIN 268
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 13/72 (18%)
Query: 545 DITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSP 604
DI APGV + + Y + + +L+GT M+ PHV+G L+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 605 AAIKSAIMTTAS 616
I++ + TA+
Sbjct: 238 VQIRNHLKNTAT 249
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 27/98 (27%)
Query: 527 AAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIP---FNALSGTSM 583
A+FSS G + D+ APGV+I + +P + A +GT M
Sbjct: 187 ASFSSAGS--------ELDVMAPGVSI----------------QSTLPGGTYGAYNGTCM 222
Query: 584 SCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNN 621
+ PHV+G L+ + HP W+ A ++ + +TA+ N+
Sbjct: 223 ATPHVAGAAALILSKHPTWTNAQVRDRLESTATYLGNS 260
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 545 DITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSP 604
DI APG +I +++ + TN +SGTSM+ PHV+G+ L +P SP
Sbjct: 198 DIYAPGSSITSSWYTSNSATNT-----------ISGTSMASPHVAGVAALYLDENPNLSP 246
Query: 605 AAIKSAIMTTAS 616
A + + + T A+
Sbjct: 247 AQVTNLLKTRAT 258
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 12/98 (12%)
Query: 526 MAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSC 585
+A FSS+GP+ +KPD+ APG I++A + A P + + + + GTSM+
Sbjct: 202 VAQFSSRGPTKDGR--IKPDVMAPGTFILSARSSLA-PDSSFWANHDSKYAYMGGTSMAT 258
Query: 586 PHVSGIVGLLKT-------LHPEWSPAAIKSAIMTTAS 616
P V+G V L+ + P+ P+ +K+A++ A+
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPK--PSLLKAALIAGAA 294
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 72/174 (41%), Gaps = 21/174 (12%)
Query: 227 AVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCW 286
A+G N++ DT +GHGTH SV G G T KG +P+A + ++
Sbjct: 55 ALGRTNNANDT----NGHGTHV----------AGSVLGNGS-TNKGMAPQANLV-FQSIM 98
Query: 287 PPVTGNECYDADILAAFDMAIHXXXXXXXXXXXXXPSKFFNDSTAIGSFHAVKHGMVVIC 346
G +++ F A + + + + K+ M ++
Sbjct: 99 DSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDYVRKNDMTILF 158
Query: 347 SAGNSGPTDSTVS--NIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKG 398
+AGN GP T+S A ITVGA+ R PS+ ++N + Q SS+G
Sbjct: 159 AAGNEGPNGGTISAPGTAKNAITVGATENLR--PSFGSYADNINHVAQ-FSSRG 209
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 11/72 (15%)
Query: 545 DITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSP 604
D+ APG +I +A+ + T L+GTSM+ PHV+G+ L +P +P
Sbjct: 196 DLFAPGASIPSAWYTSDTATQT-----------LNGTSMATPHVAGVAALYLEQNPSATP 244
Query: 605 AAIKSAIMTTAS 616
A++ SAI+ A+
Sbjct: 245 ASVASAILNGAT 256
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 15/71 (21%)
Query: 545 DITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSP 604
D+ APG +I + Y PT+ + +LSGTSM+ PHV+G+ GLL + S
Sbjct: 201 DVAAPGSSIYSTY-----PTST--------YASLSGTSMATPHVAGVAGLLASQGR--SA 245
Query: 605 AAIKSAIMTTA 615
+ I++AI TA
Sbjct: 246 SNIRAAIENTA 256
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 13/57 (22%)
Query: 543 KPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLH 599
+P+++APGV I++ Y + + + L GT+M+ PHVSG+V L++ +
Sbjct: 218 QPEVSAPGVDILSTYPDDS-------------YETLMGTAMATPHVSGVVALIQAAY 261
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 13/57 (22%)
Query: 543 KPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLH 599
+P+++APGV I++ Y + + + L GT+M+ PHVSG+V L++ +
Sbjct: 220 QPEVSAPGVDILSTYPDDS-------------YETLMGTAMATPHVSGVVALIQAAY 263
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 13/57 (22%)
Query: 543 KPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLH 599
+P+++APGV I++ Y + + + L GT+M+ PHVSG+V L++ +
Sbjct: 229 QPEVSAPGVDILSTYPDDS-------------YETLMGTAMATPHVSGVVALIQAAY 272
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 13/57 (22%)
Query: 543 KPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLH 599
+P+++APGV I++ Y + + + L GT+M+ PHVSG+V L++ +
Sbjct: 298 QPEVSAPGVDILSTYPDDS-------------YETLMGTAMATPHVSGVVALIQAAY 341
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 13/57 (22%)
Query: 543 KPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLH 599
+P+++APGV I++ Y + + + L GT+M+ PHVSG+V L++ +
Sbjct: 295 QPEVSAPGVDILSTYPDDS-------------YETLMGTAMATPHVSGVVALIQAAY 338
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 13/57 (22%)
Query: 543 KPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLH 599
+P+++APGV I++ Y + + + L GT+M+ PHVSG+V L++ +
Sbjct: 229 QPEVSAPGVDILSTYPDDS-------------YETLMGTAMATPHVSGVVALIQAAY 272
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 13/57 (22%)
Query: 543 KPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLH 599
+P+++APGV I++ Y + + + L GT+M+ PHVSG+V L++ +
Sbjct: 298 QPEVSAPGVDILSTYPDDS-------------YETLMGTAMATPHVSGVVALIQAAY 341
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 13/57 (22%)
Query: 543 KPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLH 599
+P+++APGV I++ Y + + + L GT+M+ PHVSG+V L++ +
Sbjct: 298 QPEVSAPGVDILSTYPDDS-------------YETLMGTAMATPHVSGVVALIQAAY 341
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 13/57 (22%)
Query: 543 KPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLH 599
+P+++APGV I++ Y + + + L GT+M+ PHVSG+V L++ +
Sbjct: 298 QPEVSAPGVDILSTYPDDS-------------YETLMGTAMATPHVSGVVALIQAAY 341
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 15/71 (21%)
Query: 545 DITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSP 604
D+ APG I + Y PT+ + +LSGTSM+ PHV+G+ GLL + S
Sbjct: 201 DVAAPGSWIYSTY-----PTST--------YASLSGTSMATPHVAGVAGLLASQGR--SA 245
Query: 605 AAIKSAIMTTA 615
+ I++AI TA
Sbjct: 246 SNIRAAIENTA 256
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 21/142 (14%)
Query: 222 KGYAAAVGPLNSSFDTPRDKDGHGTHTLSTA---GGNFVAKASVFGLGKGTAKGGSPKAR 278
K + A P+N+S D++GHGTH TA GG+ +A ++G+ +P A
Sbjct: 52 KDFTGATTPINNSC---TDRNGHGTHVAGTALADGGS--DQAGIYGV--------APDAD 98
Query: 279 VAAYKVCWPPVTGNECYDADILAAFDMAIHXXXXXXXXXXXXXPSKFFNDSTAIGSF--H 336
+ AYKV +G Y DI AA A +++ I S +
Sbjct: 99 LWAYKVLLDSGSG---YSDDIAAAIRHAADQATATGTKTIISMSLGSSANNSLISSAVNY 155
Query: 337 AVKHGMVVICSAGNSGPTDSTV 358
A G++++ +AGNSG + T+
Sbjct: 156 AYSKGVLIVAAAGNSGYSQGTI 177
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 17/98 (17%)
Query: 526 MAAFSSKGPSSVAPEIL----KPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGT 581
+A +SS+G S A + + +I+APG ++ + + +N +SGT
Sbjct: 203 VADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNGG-------------YNTISGT 249
Query: 582 SMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQD 619
M+ PHVSG+ + +P S ++S + A D
Sbjct: 250 XMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVD 287
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 21/142 (14%)
Query: 222 KGYAAAVGPLNSSFDTPRDKDGHGTHTLSTA---GGNFVAKASVFGLGKGTAKGGSPKAR 278
K + A P+N+S D++GHGTH TA GG+ +A ++G+ +P A
Sbjct: 52 KDFTGATTPINNSC---TDRNGHGTHVAGTALADGGS--DQAGIYGV--------APDAD 98
Query: 279 VAAYKVCWPPVTGNECYDADILAAFDMAIHXXXXXXXXXXXXXPSKFFNDSTAIGSF--H 336
+ AYKV +G Y DI AA A +++ I S +
Sbjct: 99 LWAYKVLLDSGSG---YSDDIAAAIRHAADQATATGTKTIISMSLGSSANNSLISSAVNY 155
Query: 337 AVKHGMVVICSAGNSGPTDSTV 358
A G++++ +AGNSG + T+
Sbjct: 156 AYSKGVLIVAAAGNSGYSQGTI 177
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 17/98 (17%)
Query: 526 MAAFSSKGPSSVAPEIL----KPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGT 581
+A +SS+G S A + + +I+APG ++ + + +N +SGT
Sbjct: 203 VADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNGG-------------YNTISGT 249
Query: 582 SMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQD 619
SM+ PHVSG+ + +P S ++S + A D
Sbjct: 250 SMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVD 287
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 13/57 (22%)
Query: 543 KPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLH 599
+P+++APGV I++ Y + + + L GT M+ PHVSG+V L++ +
Sbjct: 218 QPEVSAPGVDILSTYPDDS-------------YETLMGTXMATPHVSGVVALIQAAY 261
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 13/57 (22%)
Query: 543 KPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLH 599
+P+++APGV I++ Y + + + L GT M+ PHVSG+V L++ +
Sbjct: 218 QPEVSAPGVDILSTYPDDS-------------YETLMGTCMATPHVSGVVALIQAAY 261
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 27/109 (24%)
Query: 514 ATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRI 573
ATT G++ A+FS+ G + D+ APG I++ T + RR +
Sbjct: 227 ATTSRGIR-----ASFSNYG--------VDVDLAAPGQDILS--------TVDSGTRRPV 265
Query: 574 --PFNALSGTSMSCPHVSGIVGLL----KTLHPEWSPAAIKSAIMTTAS 616
++ ++GTSM+ PHVSG+ L+ +++ +PA +K +++T S
Sbjct: 266 SDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTS 314
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 27/109 (24%)
Query: 514 ATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRI 573
ATT G++ A+FS+ G + D+ APG I++ T + RR +
Sbjct: 227 ATTSRGIR-----ASFSNYG--------VDVDLAAPGQDILS--------TVDSGTRRPV 265
Query: 574 --PFNALSGTSMSCPHVSGIVGLL----KTLHPEWSPAAIKSAIMTTAS 616
++ ++GTSM+ PHVSG+ L+ +++ +PA +K +++T S
Sbjct: 266 SDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTS 314
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 27/109 (24%)
Query: 514 ATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRI 573
ATT G++ A+FS+ G + D+ APG I++ T + RR +
Sbjct: 227 ATTSRGIR-----ASFSNYG--------VDVDLAAPGQDILS--------TVDSGTRRPV 265
Query: 574 --PFNALSGTSMSCPHVSGIVGLL----KTLHPEWSPAAIKSAIMTTAS 616
++ ++GTSM+ PHVSG+ L+ +++ +PA +K +++T S
Sbjct: 266 SDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTS 314
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 17/117 (14%)
Query: 526 MAAFSSKGPSSVAPE--ILKPD--ITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGT 581
+A FSS+G A + I K D I+APG + + + + + +SGT
Sbjct: 202 VADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTWFDGG-------------YATISGT 248
Query: 582 SMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSY 638
SM+ PH +G+ + P S ++ + T AS+ D G + A+ F +
Sbjct: 249 SMASPHAAGLAAKIWAQSPAASNVDVRGELQTRASVNDILSGNSAGSGDDIASGFGF 305
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 13/116 (11%)
Query: 240 DKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADI 299
D+ GHGTH +A N + V+G+ +P+A + AYKV +G Y DI
Sbjct: 67 DRQGHGTHVAGSALANGGTGSGVYGV--------APEADLWAYKVLGDDGSG---YADDI 115
Query: 300 LAAFDMAIHXXXXXXXXXXXXXPSKFFNDSTAIGSF--HAVKHGMVVICSAGNSGP 353
A A +S+ I + +A G+++I +AGNSGP
Sbjct: 116 AEAIRHAGDQATALNTKVVINMSLGSSGESSLITNAVDYAYDKGVLIIAAAGNSGP 171
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 16/98 (16%)
Query: 579 SGTSMSCPHVSGIVGL----LKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKAT 634
+GTS + PHV+G V L LK + E+SP +IK AI TA+ G +
Sbjct: 459 NGTSXAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTAT----KLGYV--------D 506
Query: 635 PFSYGAGHIQPNLAMDPGLVYDLTENDYLNFLCALGYN 672
PF+ G G + A + + ++++ L F +G N
Sbjct: 507 PFAQGHGLLNVEKAFEHLTEHRQSKDNXLRFSVRVGNN 544
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 11/78 (14%)
Query: 546 ITAPGVTIIAAYTEAAGPTNEDYD--RRRIP------FNALSGTSMSCPHVSGIVGLLKT 597
+ APGVTI++ G + Y+ +P ++ GTSM+ PHV+G+V +L
Sbjct: 340 VGAPGVTILST---VPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQ 396
Query: 598 LHPEWSPAAIKSAIMTTA 615
P P I+ + TA
Sbjct: 397 KFPNAKPWQIRKLLENTA 414
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 36.2 bits (82), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 12/98 (12%)
Query: 526 MAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSC 585
+A FSS+GP+ +KPD+ APG I++A + A P + + + GTS +
Sbjct: 202 VAQFSSRGPTKDGR--IKPDVMAPGTFILSARSSLA-PDSSFWANHDSKYAYXGGTSXAT 258
Query: 586 PHVSGIVGLLKT-------LHPEWSPAAIKSAIMTTAS 616
P V+G V L+ + P+ P+ +K+A++ A+
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPK--PSLLKAALIAGAA 294
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 72/174 (41%), Gaps = 21/174 (12%)
Query: 227 AVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCW 286
A+G N++ DT +GHGTH SV G G T KG +P+A + ++
Sbjct: 55 ALGRTNNANDT----NGHGTHV----------AGSVLGNGS-TNKGMAPQANLV-FQSIM 98
Query: 287 PPVTGNECYDADILAAFDMAIHXXXXXXXXXXXXXPSKFFNDSTAIGSFHAVKHGMVVIC 346
G +++ F A + + + + K+ M ++
Sbjct: 99 DSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDYVRKNDMTILF 158
Query: 347 SAGNSGPTDSTVS--NIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKG 398
+AGN GP T+S A ITVGA+ R PS+ ++N + Q SS+G
Sbjct: 159 AAGNEGPNGGTISAPGTAKNAITVGATENLR--PSFGSYADNINHVAQ-FSSRG 209
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 13/54 (24%)
Query: 545 DITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTL 598
DI APGV I + Y ++ + LSGT+M+ PHV+G + L+ L
Sbjct: 226 DIVAPGVGIKSTYLDSG-------------YAELSGTAMAAPHVAGALALIINL 266
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 13/54 (24%)
Query: 545 DITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTL 598
DI APGV I + Y ++ + LSGT+M+ PHV+G + L+ L
Sbjct: 226 DIVAPGVGIKSTYLDSG-------------YAELSGTAMAAPHVAGALALIINL 266
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 13/54 (24%)
Query: 545 DITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTL 598
DI APGV I + Y ++ + LSGT+M+ PHV+G + L+ L
Sbjct: 226 DIVAPGVGIKSTYLDSG-------------YAELSGTAMAAPHVAGALALIINL 266
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 13/54 (24%)
Query: 545 DITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTL 598
DI APGV I + Y ++ + LSGT+M+ PHV+G + L+ L
Sbjct: 208 DIVAPGVGIKSTYLDSG-------------YAELSGTAMAAPHVAGALALIINL 248
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 13/53 (24%)
Query: 545 DITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKT 597
D+ APGV I++ T R + +SGTSM+ PHV+G+ LL +
Sbjct: 202 DVVAPGVDIVSTIT-----------GNRYAY--MSGTSMASPHVAGLAALLAS 241
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 19/83 (22%)
Query: 545 DITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSP 604
DI PG +I++ + G T ++SGTSM+ PHV+G+ L TL +
Sbjct: 200 DIFGPGTSILSTWI--GGSTR-----------SISGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 605 AAIKSAIMTTASIQDNNKGQILN 627
+A + I TA NKG + N
Sbjct: 247 SACR-YIADTA-----NKGDLSN 263
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 19/83 (22%)
Query: 545 DITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSP 604
DI PG +I++ + G T ++SGTSM+ PHV+G+ L TL +
Sbjct: 200 DIFGPGTSILSTWI--GGSTR-----------SISGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 605 AAIKSAIMTTASIQDNNKGQILN 627
+A + I TA NKG + N
Sbjct: 247 SACR-YIADTA-----NKGDLSN 263
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 16/65 (24%)
Query: 546 ITAPGVTIIAAY-TEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLL--------K 596
+ APG I++ AGP Y + +GTSM+ PHVSG+ L+ K
Sbjct: 247 LAAPGTNILSTIDVGQAGPVRSSYGMK-------AGTSMAAPHVSGVAALVISAANSIGK 299
Query: 597 TLHPE 601
TL P
Sbjct: 300 TLTPS 304
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 16/65 (24%)
Query: 546 ITAPGVTIIAAY-TEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLL--------K 596
+ APG I++ AGP Y + +GTSM+ PHVSG+ L+ K
Sbjct: 247 LAAPGTNILSTIDVGQAGPVRSSYGMK-------AGTSMAAPHVSGVAALVISAANSIGK 299
Query: 597 TLHPE 601
TL P
Sbjct: 300 TLTPS 304
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 19/83 (22%)
Query: 545 DITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSP 604
DI PG I++ + G T ++SGTSM+ PHV+G+ L TL +
Sbjct: 200 DIFGPGTDILSTWI--GGSTR-----------SISGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 605 AAIKSAIMTTASIQDNNKGQILN 627
+A + I TA NKG + N
Sbjct: 247 SACR-YIADTA-----NKGDLSN 263
>pdb|3QUF|A Chain A, The Structure Of A Family 1 Extracellular Solute-Binding
Protein From Bifidobacterium Longum Subsp. Infantis
pdb|3QUF|B Chain B, The Structure Of A Family 1 Extracellular Solute-Binding
Protein From Bifidobacterium Longum Subsp. Infantis
Length = 414
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 9/121 (7%)
Query: 85 FLHGNDNPEDAIFYS--------YTRHINGFAAKLDDAVAAEIAKHPKVVSVFLNQGRKL 136
FL G D+ A+F + + F D A K PK F+ G+K+
Sbjct: 111 FLDGIDDTNFALFQQDGKTYGXPVSAWVGAFFYNKDILKKAGYDKFPKTWDEFIEXGKKI 170
Query: 137 HTTHSWEFLGLERNGRVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKW 196
++ S FL S + + YGE G+LD +W +F+ + P+ +W
Sbjct: 171 NSNGSTAFLEDFNTQIAGSFTGLLASYYGEQGKSGDLDADIWSGKSTFTKD-WTPVFKRW 229
Query: 197 K 197
+
Sbjct: 230 E 230
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 16/77 (20%)
Query: 543 KPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEW 602
K I APG I+ A P E+ R L+GTSM+ P ++GI LL +L +
Sbjct: 265 KEGILAPGEEILGAQ-----PCTEEPVR-------LTGTSMAAPVMTGISALLMSLQVQQ 312
Query: 603 ----SPAAIKSAIMTTA 615
A+++A++ TA
Sbjct: 313 GKPVDAEAVRTALLKTA 329
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 16/77 (20%)
Query: 543 KPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEW 602
K I APG I+ A P E+ R L+GTSM+ P ++GI LL +L +
Sbjct: 265 KEGILAPGEEILGAQ-----PCTEEPVR-------LTGTSMAAPVMTGISALLMSLQVQQ 312
Query: 603 ----SPAAIKSAIMTTA 615
A+++A++ TA
Sbjct: 313 GKPVDAEAVRTALLKTA 329
>pdb|2V8A|B Chain B, The Structure Of Thermosynechococcus Elongatus
Allophycocyanin At 3.5 Angstroems.
pdb|3DBJ|B Chain B, Allophycocyanin From Thermosynechococcus Vulcanus
pdb|3DBJ|D Chain D, Allophycocyanin From Thermosynechococcus Vulcanus
pdb|3DBJ|F Chain F, Allophycocyanin From Thermosynechococcus Vulcanus
pdb|3DBJ|H Chain H, Allophycocyanin From Thermosynechococcus Vulcanus
Length = 161
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 489 INFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSK-GPSSVAPEILKPDIT 547
IN +D + D + ++ Y AT EL ++ A +++A ++ +VA +L DIT
Sbjct: 9 INASDVQGKYLDTAAMEKLKAYF--ATGELRVRAASVISANAANIVKEAVAKSLLYSDIT 66
Query: 548 APGVTIIAAYTEAAGPTNEDYDRRRIPFNALSG 580
PG + AA + DY R + L+G
Sbjct: 67 RPGGXMYTTRRYAACIRDLDYYLRYATYAMLAG 99
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 16/77 (20%)
Query: 543 KPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEW 602
K I APG I+ A P E+ R L+GTSM+ P ++GI LL +L +
Sbjct: 247 KEGILAPGEEILGAQ-----PCTEEPVR-------LTGTSMAAPVMTGISALLMSLQVQQ 294
Query: 603 ----SPAAIKSAIMTTA 615
A+++A++ TA
Sbjct: 295 GKPVDAEAVRTALLKTA 311
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 13/72 (18%)
Query: 545 DITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSP 604
D+ APG I +A+ + + +SGTSM+ PHV+G+ L + +P
Sbjct: 196 DLFAPGSQIKSAWYDGG-------------YKTISGTSMATPHVAGVAALYLQENNGLTP 242
Query: 605 AAIKSAIMTTAS 616
+ + + AS
Sbjct: 243 LQLTGLLNSRAS 254
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 13/55 (23%)
Query: 545 DITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLH 599
DI APG +I + + G TN +SGTSM+ PH++G+ L L
Sbjct: 201 DIFAPGTSITSTWI--GGRTNT-----------ISGTSMATPHIAGLAAYLFGLE 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,801,929
Number of Sequences: 62578
Number of extensions: 981870
Number of successful extensions: 2043
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1806
Number of HSP's gapped (non-prelim): 234
length of query: 794
length of database: 14,973,337
effective HSP length: 107
effective length of query: 687
effective length of database: 8,277,491
effective search space: 5686636317
effective search space used: 5686636317
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)