Query 038881
Match_columns 794
No_of_seqs 483 out of 3198
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 04:13:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038881.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038881hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 1.7E-51 3.7E-56 444.7 28.5 305 134-616 1-307 (307)
2 PTZ00262 subtilisin-like prote 100.0 1.7E-50 3.6E-55 453.2 21.3 304 143-655 294-618 (639)
3 cd07479 Peptidases_S8_SKI-1_li 100.0 1.6E-48 3.6E-53 408.9 22.3 243 159-618 1-253 (255)
4 cd07497 Peptidases_S8_14 Pepti 100.0 2.8E-48 6.1E-53 416.0 23.9 287 165-615 1-311 (311)
5 cd05562 Peptidases_S53_like Pe 100.0 3E-48 6.5E-53 409.8 22.6 270 162-650 1-274 (275)
6 cd07475 Peptidases_S8_C5a_Pept 100.0 1.9E-47 4.1E-52 420.8 26.1 315 157-650 1-346 (346)
7 cd07489 Peptidases_S8_5 Peptid 100.0 8.4E-47 1.8E-51 409.2 25.3 296 156-655 3-303 (312)
8 cd07478 Peptidases_S8_CspA-lik 100.0 1.9E-47 4.1E-52 429.8 20.0 407 163-641 1-455 (455)
9 KOG1153 Subtilisin-related pro 100.0 4.6E-47 1E-51 396.2 20.2 336 45-616 75-461 (501)
10 cd07476 Peptidases_S8_thiazoli 100.0 4.6E-46 1E-50 392.1 22.7 248 158-620 2-254 (267)
11 cd05561 Peptidases_S8_4 Peptid 100.0 1.6E-45 3.4E-50 382.8 22.2 238 168-641 1-239 (239)
12 cd07474 Peptidases_S8_subtilis 100.0 6.3E-45 1.4E-49 392.0 26.2 285 165-648 1-295 (295)
13 cd07493 Peptidases_S8_9 Peptid 100.0 1.8E-44 3.9E-49 381.1 23.8 245 167-616 1-261 (261)
14 cd07481 Peptidases_S8_Bacillop 100.0 3.7E-44 8E-49 379.2 23.8 247 165-616 1-264 (264)
15 cd07483 Peptidases_S8_Subtilis 100.0 4.9E-44 1.1E-48 382.6 23.2 264 166-616 1-291 (291)
16 cd04857 Peptidases_S8_Tripepti 100.0 2.5E-43 5.4E-48 384.4 25.4 223 239-618 182-412 (412)
17 cd07485 Peptidases_S8_Fervidol 100.0 2.3E-43 5E-48 375.0 23.7 264 157-614 1-273 (273)
18 cd07487 Peptidases_S8_1 Peptid 100.0 5.3E-43 1.1E-47 370.9 24.6 257 165-616 1-264 (264)
19 cd04077 Peptidases_S8_PCSK9_Pr 100.0 5.8E-43 1.3E-47 368.5 23.6 233 158-617 17-255 (255)
20 cd07484 Peptidases_S8_Thermita 100.0 3.3E-42 7.2E-47 363.8 23.5 242 155-618 18-259 (260)
21 cd04847 Peptidases_S8_Subtilis 100.0 2.2E-42 4.8E-47 371.0 20.0 266 169-616 2-291 (291)
22 cd07490 Peptidases_S8_6 Peptid 100.0 7.4E-42 1.6E-46 360.0 22.7 253 167-616 1-254 (254)
23 cd07494 Peptidases_S8_10 Pepti 100.0 1.3E-41 2.8E-46 363.8 23.6 249 155-619 10-286 (298)
24 cd04842 Peptidases_S8_Kp43_pro 100.0 1.6E-41 3.6E-46 365.1 24.3 279 161-616 2-293 (293)
25 cd07496 Peptidases_S8_13 Pepti 100.0 2.1E-41 4.5E-46 362.3 23.4 207 237-614 66-285 (285)
26 cd04843 Peptidases_S8_11 Pepti 100.0 5.8E-41 1.3E-45 354.7 22.1 249 155-616 4-277 (277)
27 cd07498 Peptidases_S8_15 Pepti 100.0 4.6E-41 1E-45 351.3 20.5 240 168-614 1-242 (242)
28 cd07480 Peptidases_S8_12 Pepti 100.0 6.1E-41 1.3E-45 360.6 21.4 265 160-646 2-296 (297)
29 KOG4266 Subtilisin kexin isozy 100.0 5.1E-40 1.1E-44 351.3 27.8 367 42-650 41-465 (1033)
30 cd07477 Peptidases_S8_Subtilis 100.0 2.2E-40 4.7E-45 343.3 22.1 227 167-614 1-229 (229)
31 cd07473 Peptidases_S8_Subtilis 100.0 5.8E-40 1.3E-44 346.6 23.5 249 166-616 2-259 (259)
32 cd07491 Peptidases_S8_7 Peptid 100.0 4E-40 8.6E-45 342.8 18.8 161 165-373 2-171 (247)
33 cd04059 Peptidases_S8_Protein_ 100.0 8.7E-40 1.9E-44 352.3 21.6 249 154-616 27-297 (297)
34 PF00082 Peptidase_S8: Subtila 100.0 3.8E-40 8.2E-45 352.4 13.6 274 169-650 1-282 (282)
35 cd07492 Peptidases_S8_8 Peptid 100.0 5.1E-39 1.1E-43 331.3 21.1 221 167-616 1-222 (222)
36 cd07482 Peptidases_S8_Lantibio 100.0 7.2E-39 1.6E-43 344.8 21.5 252 167-614 1-294 (294)
37 cd04848 Peptidases_S8_Autotran 100.0 3.7E-38 8E-43 334.1 20.8 244 164-616 1-267 (267)
38 KOG1114 Tripeptidyl peptidase 100.0 8.1E-33 1.8E-37 308.6 22.1 355 242-792 310-687 (1304)
39 cd07488 Peptidases_S8_2 Peptid 100.0 1.2E-33 2.6E-38 293.1 14.0 193 237-614 32-246 (247)
40 cd00306 Peptidases_S8_S53 Pept 100.0 8.5E-31 1.8E-35 272.1 21.9 197 237-614 39-241 (241)
41 COG1404 AprE Subtilisin-like s 99.9 6E-24 1.3E-28 245.0 23.6 274 155-650 129-420 (508)
42 KOG3526 Subtilisin-like propro 99.9 7.8E-23 1.7E-27 209.0 9.2 173 155-370 150-335 (629)
43 cd04056 Peptidases_S53 Peptida 99.7 7.3E-17 1.6E-21 177.8 15.3 101 268-375 81-198 (361)
44 cd02133 PA_C5a_like PA_C5a_lik 99.3 1.2E-11 2.7E-16 117.9 11.3 117 402-536 25-142 (143)
45 cd02120 PA_subtilisin_like PA_ 99.2 5.6E-11 1.2E-15 111.0 11.9 123 381-510 2-125 (126)
46 PF05922 Inhibitor_I9: Peptida 98.9 3.6E-09 7.8E-14 90.7 7.1 78 52-137 1-82 (82)
47 cd02129 PA_hSPPL_like PA_hSPPL 98.8 1.5E-08 3.2E-13 92.3 9.0 82 422-503 29-114 (120)
48 cd02122 PA_GRAIL_like PA _GRAI 98.8 1.6E-08 3.5E-13 95.1 9.3 89 422-510 43-137 (138)
49 cd04816 PA_SaNapH_like PA_SaNa 98.8 1.5E-08 3.3E-13 93.9 8.7 88 423-510 29-121 (122)
50 cd02127 PA_hPAP21_like PA_hPAP 98.8 2.9E-08 6.2E-13 90.9 9.5 89 423-512 21-117 (118)
51 PF02225 PA: PA domain; Inter 98.7 2E-08 4.4E-13 89.7 5.6 79 423-501 19-101 (101)
52 cd04818 PA_subtilisin_1 PA_sub 98.7 7.4E-08 1.6E-12 88.8 9.1 88 422-510 26-117 (118)
53 cd02126 PA_EDEM3_like PA_EDEM3 98.7 7.8E-08 1.7E-12 89.4 8.9 86 423-509 27-124 (126)
54 cd00538 PA PA: Protease-associ 98.6 1.2E-07 2.5E-12 88.4 8.9 88 422-509 29-124 (126)
55 PF06280 DUF1034: Fn3-like dom 98.6 4.5E-07 9.8E-12 82.7 12.2 90 700-790 1-112 (112)
56 cd02130 PA_ScAPY_like PA_ScAPY 98.6 1.4E-07 3.1E-12 87.4 8.8 86 424-510 32-121 (122)
57 KOG3525 Subtilisin-like propro 98.6 2.9E-07 6.3E-12 102.7 12.4 159 155-357 22-190 (431)
58 cd02132 PA_GO-like PA_GO-like: 98.6 2E-07 4.4E-12 88.2 8.8 84 423-509 48-137 (139)
59 cd04817 PA_VapT_like PA_VapT_l 98.6 2.2E-07 4.7E-12 87.1 8.3 75 430-504 49-134 (139)
60 cd02125 PA_VSR PA_VSR: Proteas 98.5 2.7E-07 5.9E-12 85.7 8.8 88 423-510 22-126 (127)
61 cd02124 PA_PoS1_like PA_PoS1_l 98.5 3.8E-07 8.3E-12 84.9 8.9 88 422-510 40-128 (129)
62 cd04813 PA_1 PA_1: Protease-as 98.5 3.1E-07 6.7E-12 83.9 7.9 81 422-504 26-112 (117)
63 cd02123 PA_C_RZF_like PA_C-RZF 98.4 7E-07 1.5E-11 85.9 8.9 84 423-506 50-142 (153)
64 cd04819 PA_2 PA_2: Protease-as 98.2 1.1E-05 2.4E-10 75.3 10.8 76 430-505 37-121 (127)
65 COG4934 Predicted protease [Po 98.2 8.2E-06 1.8E-10 98.0 11.7 95 269-370 287-395 (1174)
66 cd04815 PA_M28_2 PA_M28_2: Pro 97.7 0.00017 3.7E-09 67.9 8.3 78 432-509 34-132 (134)
67 cd02128 PA_TfR PA_TfR: Proteas 97.3 0.00054 1.2E-08 67.2 6.7 71 433-503 51-155 (183)
68 KOG2442 Uncharacterized conser 96.8 0.0033 7.2E-08 68.7 7.5 82 433-514 91-178 (541)
69 cd04814 PA_M28_1 PA_M28_1: Pro 96.4 0.0045 9.7E-08 58.4 5.1 63 403-472 20-100 (142)
70 cd04820 PA_M28_1_1 PA_M28_1_1: 96.3 0.0065 1.4E-07 56.9 5.4 49 424-472 36-96 (137)
71 PF14874 PapD-like: Flagellar- 96.1 0.2 4.2E-06 44.5 13.9 81 707-793 20-101 (102)
72 cd04822 PA_M28_1_3 PA_M28_1_3: 96.1 0.0098 2.1E-07 56.8 5.5 50 423-472 33-100 (151)
73 cd02131 PA_hNAALADL2_like PA_h 95.6 0.015 3.3E-07 54.7 4.7 39 434-472 37-75 (153)
74 cd02121 PA_GCPII_like PA_GCPII 95.6 0.019 4.2E-07 58.3 5.8 40 433-472 67-106 (220)
75 PF10633 NPCBM_assoc: NPCBM-as 95.3 0.067 1.5E-06 45.1 7.0 56 707-762 5-62 (78)
76 KOG3920 Uncharacterized conser 95.0 0.033 7.1E-07 51.9 4.6 90 422-512 73-172 (193)
77 KOG4628 Predicted E3 ubiquitin 94.3 0.11 2.3E-06 56.0 7.1 81 424-504 63-150 (348)
78 PF11614 FixG_C: IG-like fold 91.1 1.7 3.8E-05 39.7 9.6 55 708-763 32-87 (118)
79 cd04821 PA_M28_1_2 PA_M28_1_2: 87.0 0.99 2.2E-05 43.5 4.9 43 430-472 42-103 (157)
80 PF06030 DUF916: Bacterial pro 85.5 5.4 0.00012 36.7 8.8 70 706-779 26-120 (121)
81 PF00345 PapD_N: Pili and flag 84.5 15 0.00033 33.6 11.4 68 707-778 14-89 (122)
82 KOG1114 Tripeptidyl peptidase 81.6 0.99 2.1E-05 53.8 2.7 25 161-185 76-100 (1304)
83 COG1470 Predicted membrane pro 79.8 11 0.00023 42.3 9.5 71 707-779 397-469 (513)
84 COG1470 Predicted membrane pro 74.0 34 0.00073 38.5 11.4 62 707-770 284-352 (513)
85 TIGR02745 ccoG_rdxA_fixG cytoc 68.4 18 0.00038 41.1 8.2 54 708-762 347-401 (434)
86 PF07718 Coatamer_beta_C: Coat 67.4 50 0.0011 31.1 9.5 68 708-779 70-139 (140)
87 PF00635 Motile_Sperm: MSP (Ma 63.0 31 0.00068 30.5 7.3 53 707-762 18-71 (109)
88 PF07705 CARDB: CARDB; InterP 61.5 33 0.00071 29.6 7.1 52 706-761 18-72 (101)
89 PF00927 Transglut_C: Transglu 51.7 92 0.002 27.6 8.4 55 706-762 14-78 (107)
90 PRK15098 beta-D-glucoside gluc 48.7 43 0.00093 41.1 7.4 53 707-762 667-729 (765)
91 PF05753 TRAP_beta: Translocon 47.8 1.3E+02 0.0029 29.7 9.4 67 707-777 38-110 (181)
92 PF12690 BsuPI: Intracellular 44.6 54 0.0012 27.9 5.3 53 709-762 2-72 (82)
93 PF07610 DUF1573: Protein of u 42.7 72 0.0016 23.6 5.1 43 713-758 2-45 (45)
94 PLN03080 Probable beta-xylosid 40.3 58 0.0013 40.0 6.7 80 708-788 685-778 (779)
95 smart00635 BID_2 Bacterial Ig- 39.5 1.3E+02 0.0028 25.2 6.9 45 735-786 4-48 (81)
96 PF05506 DUF756: Domain of unk 36.1 1.1E+02 0.0024 26.1 6.1 47 707-758 18-65 (89)
97 PF02845 CUE: CUE domain; Int 32.6 43 0.00094 24.3 2.5 24 592-615 5-28 (42)
98 PF08260 Kinin: Insect kinin p 32.5 21 0.00045 16.5 0.4 6 528-533 3-8 (8)
99 TIGR01451 B_ant_repeat conserv 30.8 1.7E+02 0.0038 22.4 5.7 38 706-745 11-50 (53)
100 PF03160 Calx-beta: Calx-beta 30.5 3.5E+02 0.0077 23.3 8.7 67 695-762 15-87 (100)
101 KOG2018 Predicted dinucleotide 28.4 78 0.0017 33.8 4.4 80 270-350 137-246 (430)
102 PRK15019 CsdA-binding activato 25.3 64 0.0014 30.8 2.9 33 576-609 77-109 (147)
103 PF13940 Ldr_toxin: Toxin Ldr, 24.6 58 0.0013 22.4 1.7 13 583-595 14-26 (35)
104 smart00237 Calx_beta Domains i 24.2 4.5E+02 0.0098 22.4 9.3 61 698-761 9-76 (90)
105 TIGR03391 FeS_syn_CsdE cystein 24.1 70 0.0015 30.2 2.9 34 576-610 72-105 (138)
106 PF01345 DUF11: Domain of unkn 22.9 1.8E+02 0.004 23.8 5.0 31 706-736 40-72 (76)
107 PF08821 CGGC: CGGC domain; I 22.1 3.7E+02 0.008 24.2 7.0 41 275-321 36-76 (107)
108 PRK09296 cysteine desufuration 22.0 72 0.0016 30.1 2.5 33 576-609 67-99 (138)
109 smart00546 CUE Domain that may 21.8 1.3E+02 0.0027 21.9 3.3 25 591-615 5-29 (43)
110 PRK13202 ureB urease subunit b 20.3 1.6E+02 0.0035 26.1 4.1 48 709-757 21-83 (104)
111 PF04255 DUF433: Protein of un 20.2 83 0.0018 24.5 2.2 38 575-612 11-54 (56)
112 PF07233 DUF1425: Protein of u 20.1 5.8E+02 0.013 22.1 8.1 50 705-755 22-77 (94)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.7e-51 Score=444.74 Aligned_cols=305 Identities=56% Similarity=0.911 Sum_probs=255.7
Q ss_pred ecccccCCccccccccCCCccccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCC-ccccccc
Q 038881 134 RKLHTTHSWEFLGLERNGRVESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKD-AKFLCNR 212 (794)
Q Consensus 134 ~~~~~~~s~~~~gl~~~~~~~~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~-~~~~~n~ 212 (794)
+++++++++.++|+.... ...+|..+++|+||+|||||||||++||+|.+++..+++..|.+.|..+.. ....|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAW---GGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNN 77 (307)
T ss_pred CCccccCCHHHcCCCCCC---CcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCC
Confidence 467889999999988543 122577899999999999999999999999999999999999999998877 5677999
Q ss_pred cccceeeccccc-ccccCCCCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCC
Q 038881 213 KLIGARYFNKGY-AAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTG 291 (794)
Q Consensus 213 ki~g~~~~~~~~-~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G 291 (794)
|+++.++|.+++ .......+.+..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++.. +
T Consensus 78 ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~--~ 155 (307)
T cd04852 78 KLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPD--G 155 (307)
T ss_pred eEEEEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCC--C
Confidence 999999998765 2201011223566788999999999999999766655566666778999999999999999874 2
Q ss_pred CCCChHHHHHHHHHhHhCCceEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEeccc
Q 038881 292 NECYDADILAAFDMAIHDGVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGAS 371 (794)
Q Consensus 292 ~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ap~vitVgAs 371 (794)
.+..+++++||++|++++++|||||||......+.+.+..++..+.++|++||+||||+|+.....++.+||+++|||+
T Consensus 156 -~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~ 234 (307)
T cd04852 156 -GCFGSDILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAS 234 (307)
T ss_pred -CccHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEec
Confidence 4789999999999999999999999999854456778888888999999999999999998887888889999999973
Q ss_pred cCCCCccceEEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhh
Q 038881 372 TMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARI 451 (794)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~ 451 (794)
+
T Consensus 235 ~------------------------------------------------------------------------------- 235 (307)
T cd04852 235 T------------------------------------------------------------------------------- 235 (307)
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred hHHHHHHHcCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccC
Q 038881 452 DKGQQALLAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSS 531 (794)
Q Consensus 452 ~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS 531 (794)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCcccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHH
Q 038881 532 KGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAI 611 (794)
Q Consensus 532 ~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L 611 (794)
+||||+|||.+|++++..... .........|..++|||||||+|||++|||+|++|+|+|.|||++|
T Consensus 236 ----------~~~di~apG~~i~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L 302 (307)
T cd04852 236 ----------LKPDIAAPGVDILAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSAL 302 (307)
T ss_pred ----------CccceeeccCceeecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 467999999999999875311 1122334689999999999999999999999999999999999999
Q ss_pred HhcCc
Q 038881 612 MTTAS 616 (794)
Q Consensus 612 ~~TA~ 616 (794)
++||+
T Consensus 303 ~~tA~ 307 (307)
T cd04852 303 MTTAY 307 (307)
T ss_pred HHhcC
Confidence 99985
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=1.7e-50 Score=453.19 Aligned_cols=304 Identities=17% Similarity=0.144 Sum_probs=217.0
Q ss_pred cccccccCCCcccccccc--ccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeec
Q 038881 143 EFLGLERNGRVESNSIWK--KARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYF 220 (794)
Q Consensus 143 ~~~gl~~~~~~~~~~~~~--~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~ 220 (794)
.+|+++.+. ++.+|+ .+.+|+||+|||||||||++||||.++-... +....|.-....+ ...... -+.+++|
T Consensus 294 ~qWgLd~i~---~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n-~~el~GrdgiDdD-~nG~vd-d~~G~nf 367 (639)
T PTZ00262 294 LQWGLDLTR---LDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVN-VKELHGRKGIDDD-NNGNVD-DEYGANF 367 (639)
T ss_pred cCcCcchhC---chHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccc-cccccCccccccc-cCCccc-ccccccc
Confidence 346666544 445665 4568999999999999999999998641000 0001110000000 000000 1123344
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHH
Q 038881 221 NKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADIL 300 (794)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~ 300 (794)
.++ ..++.|.+||||||||||||... ++..+.||||+|+|+++|+++.. | .+..++++
T Consensus 368 Vd~-----------~~~P~D~~GHGTHVAGIIAA~gn--------N~~Gi~GVAP~AkLi~vKVld~~--G-~G~~sdI~ 425 (639)
T PTZ00262 368 VNN-----------DGGPMDDNYHGTHVSGIISAIGN--------NNIGIVGVDKRSKLIICKALDSH--K-LGRLGDMF 425 (639)
T ss_pred cCC-----------CCCCCCCCCcchHHHHHHhcccc--------CCCceeeeecccccceEEEecCC--C-CccHHHHH
Confidence 432 34567899999999999999742 22345899999999999999876 3 47889999
Q ss_pred HHHHHhHhCCceEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCC--------------cCC----CC
Q 038881 301 AAFDMAIHDGVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDST--------------VSN----IA 362 (794)
Q Consensus 301 ~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~--------------~~~----~a 362 (794)
+||+||++.|++|||||||+. .+...+..++..|.++|++||+||||+|+.... +++ ..
T Consensus 426 ~AI~yA~~~GA~VINmSlG~~---~~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~ 502 (639)
T PTZ00262 426 KCFDYCISREAHMINGSFSFD---EYSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKL 502 (639)
T ss_pred HHHHHHHHCCCCEEEeccccC---CccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccC
Confidence 999999999999999999976 234567788889999999999999999864321 111 24
Q ss_pred CceEEeccccCCCCccceEEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEE
Q 038881 363 PWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILV 442 (794)
Q Consensus 363 p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl 442 (794)
|++|+|||++.+..
T Consensus 503 ~nVIaVGAv~~d~~------------------------------------------------------------------ 516 (639)
T PTZ00262 503 RNVITVSNLIKDKN------------------------------------------------------------------ 516 (639)
T ss_pred CCEEEEeeccCCCC------------------------------------------------------------------
Confidence 67788887543210
Q ss_pred EecCCchhhhHHHHHHHcCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCC
Q 038881 443 CLRGDNARIDKGQQALLAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKP 522 (794)
Q Consensus 443 ~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~ 522 (794)
.
T Consensus 517 -------------------------------------------------------------------------------~ 517 (639)
T PTZ00262 517 -------------------------------------------------------------------------------N 517 (639)
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred CCccccccCCCCCCCCCCcccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCC
Q 038881 523 APIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEW 602 (794)
Q Consensus 523 ~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~l 602 (794)
...++.||++|.. ++||+|||++|+|+++. +.|..++|||||||||||+||||++++|+|
T Consensus 518 ~~s~s~~Snyg~~-------~VDIaAPG~dI~St~p~-------------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~L 577 (639)
T PTZ00262 518 QYSLSPNSFYSAK-------YCQLAAPGTNIYSTFPK-------------NSYRKLNGTSMAAPHVAAIASLILSINPSL 577 (639)
T ss_pred cccccccccCCCC-------cceEEeCCCCeeeccCC-------------CceeecCCCchhHHHHHHHHHHHHhhCCCC
Confidence 0134456677622 24999999999999876 489999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCccccCCCcccccCCCCCCCCCccc-ccccccccccCCCccc
Q 038881 603 SPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYG-AGHIQPNLAMDPGLVY 655 (794)
Q Consensus 603 sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G-~G~vn~~~Al~~~lv~ 655 (794)
+++||+++|++||.++... +..+| .|+||+++|++..+.+
T Consensus 578 T~~qV~~iL~~TA~~l~~~-------------~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 578 SYEEVIRILKESIVQLPSL-------------KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred CHHHHHHHHHHhCccCCCC-------------CCccccCcEEcHHHHHHHHHhc
Confidence 9999999999999876321 12233 3899999999876644
No 3
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=1.6e-48 Score=408.85 Aligned_cols=243 Identities=27% Similarity=0.380 Sum_probs=199.7
Q ss_pred ccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCCC
Q 038881 159 WKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTP 238 (794)
Q Consensus 159 ~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~ 238 (794)
|+++++|+||+|||||||||.+||+|.+. +...+|.. ....
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~---------------------------~~~~~~~~------------~~~~ 41 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNV---------------------------KERTNWTN------------EKTL 41 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhcc---------------------------ccccccCC------------CCCC
Confidence 89999999999999999999999999632 01112221 1234
Q ss_pred CCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEEcc
Q 038881 239 RDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSL 318 (794)
Q Consensus 239 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~Sl 318 (794)
.|..||||||||||+|+. ..+.||||+|+|+.+|++.+. + .+..+.++++|+|+++++++||||||
T Consensus 42 ~d~~gHGT~VAGiIa~~~-----------~~~~GvAp~a~l~~~~v~~~~--~-~~~~~~~~~a~~~a~~~~~~Vin~S~ 107 (255)
T cd07479 42 DDGLGHGTFVAGVIASSR-----------EQCLGFAPDAEIYIFRVFTNN--Q-VSYTSWFLDAFNYAILTKIDVLNLSI 107 (255)
T ss_pred CCCCCcHHHHHHHHHccC-----------CCceeECCCCEEEEEEeecCC--C-CchHHHHHHHHHhhhhcCCCEEEeec
Confidence 577899999999999874 124899999999999999876 3 35678899999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCc--CCCCCceEEeccccCCCCccceEEecCCeEEeeeecCC
Q 038881 319 GGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTV--SNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSS 396 (794)
Q Consensus 319 G~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~--~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~ 396 (794)
|... +.+.++..++.++.++|++||+||||+|+...+. +...+++|+|||++.
T Consensus 108 G~~~--~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~----------------------- 162 (255)
T cd07479 108 GGPD--FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDF----------------------- 162 (255)
T ss_pred cCCC--CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeecc-----------------------
Confidence 9862 3445677777888999999999999999765443 346689999998543
Q ss_pred CCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCcc
Q 038881 397 KGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNE 476 (794)
Q Consensus 397 ~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~ 476 (794)
T Consensus 163 -------------------------------------------------------------------------------- 162 (255)
T cd07479 163 -------------------------------------------------------------------------------- 162 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCC----CCCcccCceEeCCce
Q 038881 477 LLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSV----APEILKPDITAPGVT 552 (794)
Q Consensus 477 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~----~~~~~KPDI~APG~~ 552 (794)
.+.++.|||+|++.+ .++++||||+|||.+
T Consensus 163 ----------------------------------------------~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~ 196 (255)
T cd07479 163 ----------------------------------------------DDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSG 196 (255)
T ss_pred ----------------------------------------------CCccccccCCCCCcccccCCCCCcCccEEecCCC
Confidence 146789999996532 267899999999999
Q ss_pred EEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCC----CCCHHHHHHHHHhcCccc
Q 038881 553 IIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHP----EWSPAAIKSAIMTTASIQ 618 (794)
Q Consensus 553 I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p----~lsp~~ik~~L~~TA~~~ 618 (794)
|+++... +.|..++|||||||||||++|||+|++| .++|.+||++|++||+++
T Consensus 197 i~~~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~ 253 (255)
T cd07479 197 VYGSKLK-------------GGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRL 253 (255)
T ss_pred eeccccC-------------CCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccC
Confidence 9987654 3788999999999999999999999998 789999999999999986
No 4
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.8e-48 Score=416.00 Aligned_cols=287 Identities=27% Similarity=0.270 Sum_probs=191.7
Q ss_pred CCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCCCCCCCCC
Q 038881 165 GEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGH 244 (794)
Q Consensus 165 G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~d~~gH 244 (794)
|+||+|||||||||++||||.++.. ..|.-. +.+...+..+.++..+ ....+.|.+||
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~----~~~~~~--------~d~~~~~~~g~d~~~~----------~~~~~~D~~gH 58 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGN----FSWKLK--------FDYKAYLLPGMDKWGG----------FYVIMYDFFSH 58 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccC----CCcccc--------cCcCCCccCCcCCCCC----------ccCCCCCcccc
Confidence 8999999999999999999975410 001000 0011112222222211 11346789999
Q ss_pred Ccceeeccccccccccccccc-CCCcccccCCCceEEEEEeecCCCCCCCCChHHHHH-------HHHHh--HhCCceEE
Q 038881 245 GTHTLSTAGGNFVAKASVFGL-GKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILA-------AFDMA--IHDGVDVL 314 (794)
Q Consensus 245 GThVAGiiag~~~~~~~~~G~-~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~-------ai~~a--~~~g~dVI 314 (794)
||||||||||......+.+++ ....+.||||+|+|+.+|+|.... .+....+.. +++|. .+++++||
T Consensus 59 GThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VI 135 (311)
T cd07497 59 GTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGD---VIYAWLWTAGFDPVDRKLSWIYTGGPRVDVI 135 (311)
T ss_pred chhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCC---cchhhhhhhccchhhhhhhhhhccCCCceEE
Confidence 999999999986433222221 123569999999999999997541 232333333 34443 36799999
Q ss_pred EEccCCCCCCC-----CCCHHHHHHHH-HHhCCcEEEEecCCCCCCCCCcC--CCCCceEEeccccCCCCccceEEecCC
Q 038881 315 SVSLGGGPSKF-----FNDSTAIGSFH-AVKHGMVVICSAGNSGPTDSTVS--NIAPWQITVGASTMDRDFPSYVVVSNN 386 (794)
Q Consensus 315 N~SlG~~~~~~-----~~~~~~~a~~~-a~~~Gv~vV~AAGN~G~~~~~~~--~~ap~vitVgAs~~~~~~~~~~~~~~~ 386 (794)
|||||.....+ ..+..+..... +.++|++||+||||+|+...+.. ..++++|+|||++..+..+.
T Consensus 136 N~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~------- 208 (311)
T cd07497 136 SNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPF------- 208 (311)
T ss_pred EecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccch-------
Confidence 99999863211 11233333333 24899999999999998655443 46789999999764321000
Q ss_pred eEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEE
Q 038881 387 KRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMV 466 (794)
Q Consensus 387 ~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi 466 (794)
+.+.+
T Consensus 209 ------------------~~~~~--------------------------------------------------------- 213 (311)
T cd07497 209 ------------------YLFGY--------------------------------------------------------- 213 (311)
T ss_pred ------------------hhhcc---------------------------------------------------------
Confidence 00000
Q ss_pred EeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCce
Q 038881 467 LANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDI 546 (794)
Q Consensus 467 ~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI 546 (794)
.....+.++.||||||+. ++++||||
T Consensus 214 ----------------------------------------------------~~~~~~~~~~fSs~Gp~~--~g~~kPdv 239 (311)
T cd07497 214 ----------------------------------------------------LPGGSGDVVSWSSRGPSI--AGDPKPDL 239 (311)
T ss_pred ----------------------------------------------------ccCCCCCccccccCCCCc--ccCCCCce
Confidence 001135789999999998 89999999
Q ss_pred EeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCC------CCCHHHHHHHHHhcC
Q 038881 547 TAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHP------EWSPAAIKSAIMTTA 615 (794)
Q Consensus 547 ~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p------~lsp~~ik~~L~~TA 615 (794)
+|||++|+++.+...... .......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 240 ~ApG~~i~s~~~~~~~~~---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 240 AAIGAFAWAPGRVLDSGG---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred eccCcceEeecccCCCCc---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 999999999876532100 011124789999999999999999999999876 589999999999997
No 5
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=3e-48 Score=409.81 Aligned_cols=270 Identities=22% Similarity=0.226 Sum_probs=202.9
Q ss_pred cCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCCCCCC
Q 038881 162 ARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDK 241 (794)
Q Consensus 162 g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~d~ 241 (794)
|++|+||+|||||||||.+||+|.+...+ ++.+...+... .....|.
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~----------------------~l~~~~~~~~~-----------~~~~~d~ 47 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASG----------------------DLPGNVNVLGD-----------LDGGSGG 47 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCC----------------------CCCcceeeccc-----------cCCCCCC
Confidence 57999999999999999998865322111 11111111110 1234578
Q ss_pred CCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEEccCCC
Q 038881 242 DGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGGG 321 (794)
Q Consensus 242 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~ 321 (794)
.+|||||||||+ ||||+|+|+.+|+. ...+++++||+|++++|++|||||||..
T Consensus 48 ~gHGT~vAgii~------------------GvAP~a~l~~~~~~--------~~~~~i~~ai~~a~~~g~~Vin~S~g~~ 101 (275)
T cd05562 48 GDEGRAMLEIIH------------------DIAPGAELAFHTAG--------GGELDFAAAIRALAAAGADIIVDDIGYL 101 (275)
T ss_pred CchHHHHHHHHh------------------ccCCCCEEEEEecC--------CCHHHHHHHHHHHHHcCCCEEEeccccc
Confidence 899999999984 67999999999873 3578999999999999999999999986
Q ss_pred CCCC-CCCHHHHHHHHHHhC-CcEEEEecCCCCCCCCCc-CCCCCceEEeccccCCCCccceEEecCCeEEeeeecCCCC
Q 038881 322 PSKF-FNDSTAIGSFHAVKH-GMVVICSAGNSGPTDSTV-SNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKG 398 (794)
Q Consensus 322 ~~~~-~~~~~~~a~~~a~~~-Gv~vV~AAGN~G~~~~~~-~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~ 398 (794)
...+ .+..+..++.++.++ |++||+||||+|+..... +...|++|+|||++.......+...+
T Consensus 102 ~~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~~-------------- 167 (275)
T cd05562 102 NEPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDPA-------------- 167 (275)
T ss_pred CCCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCcccccccc--------------
Confidence 4333 334677888888887 999999999999854333 45789999999986543110000000
Q ss_pred CCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCcccc
Q 038881 399 LPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELL 478 (794)
Q Consensus 399 ~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~ 478 (794)
T Consensus 168 -------------------------------------------------------------------------------- 167 (275)
T cd05562 168 -------------------------------------------------------------------------------- 167 (275)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCc-eEEeee
Q 038881 479 ADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGV-TIIAAY 557 (794)
Q Consensus 479 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~-~I~Sa~ 557 (794)
........+.||++||+. ++++||||+|||+ ++.+++
T Consensus 168 ----------------------------------------~~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~ 205 (275)
T cd05562 168 ----------------------------------------PGGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDG 205 (275)
T ss_pred ----------------------------------------cCCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCC
Confidence 000012355678899987 8899999999975 344444
Q ss_pred cCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccccCCCcccccCCCCCCCCCc
Q 038881 558 TEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFS 637 (794)
Q Consensus 558 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~ 637 (794)
.. +.|..++|||||||||||++|||+|++|+|++++||++|++||+++.. +..+..
T Consensus 206 ~~-------------~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~-----------~g~d~~ 261 (275)
T cd05562 206 DG-------------DGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGE-----------PGYDNA 261 (275)
T ss_pred cC-------------CceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC-----------CCCCCC
Confidence 33 478999999999999999999999999999999999999999988742 335678
Q ss_pred ccccccccccccC
Q 038881 638 YGAGHIQPNLAMD 650 (794)
Q Consensus 638 ~G~G~vn~~~Al~ 650 (794)
||||+||+.+|++
T Consensus 262 ~G~G~vda~~Av~ 274 (275)
T cd05562 262 SGSGLVDADRAVA 274 (275)
T ss_pred cCcCcccHHHHhh
Confidence 9999999999986
No 6
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=1.9e-47 Score=420.77 Aligned_cols=315 Identities=29% Similarity=0.363 Sum_probs=236.8
Q ss_pred ccccccC-CCCceEEEEecCCCCCCCCCCcCCCCCCCCC-----ccccccccCCCccccccccccceeecccccccccCC
Q 038881 157 SIWKKAR-YGEDTIIGNLDTGVWPESKSFSDEGLGPIPS-----KWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGP 230 (794)
Q Consensus 157 ~~~~~g~-~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~-----~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~ 230 (794)
.+|+++. +|+||+|||||||||++||+|.+....+... .+...+.. ....+++.+++.+++|.++. .
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~- 73 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGI--GYGKYYNEKVPFAYNYADNN----D- 73 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccC--CCCcccccCCCeeEcCCCCC----C-
Confidence 3788887 9999999999999999999998754332111 11111111 14466778888888888652 0
Q ss_pred CCCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCC
Q 038881 231 LNSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDG 310 (794)
Q Consensus 231 ~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g 310 (794)
+.....|..+|||||||||+|...+.. .+..+.||||+|+|+.+|+++....+ .+....+++|++++++.+
T Consensus 74 ---~~~~~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~-~~~~~~~~~ai~~a~~~g 144 (346)
T cd07475 74 ---DILDEDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGG-STYDDAYAKAIEDAVKLG 144 (346)
T ss_pred ---ccCCCCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCC-CCCHHHHHHHHHHHHHcC
Confidence 011245789999999999999863211 13456999999999999999741112 478889999999999999
Q ss_pred ceEEEEccCCCCCC-CCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCc----------------CCCCCceEEeccccC
Q 038881 311 VDVLSVSLGGGPSK-FFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTV----------------SNIAPWQITVGASTM 373 (794)
Q Consensus 311 ~dVIN~SlG~~~~~-~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~----------------~~~ap~vitVgAs~~ 373 (794)
++|||||||..... .....+..++.++.++|++||+||||+|...... +...+++|+||+++.
T Consensus 145 ~~Vin~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~ 224 (346)
T cd07475 145 ADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANK 224 (346)
T ss_pred CCEEEECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeeccc
Confidence 99999999998422 4556677888889999999999999998643221 123456666666431
Q ss_pred CCCccceEEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhH
Q 038881 374 DRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDK 453 (794)
Q Consensus 374 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~ 453 (794)
..
T Consensus 225 ~~------------------------------------------------------------------------------ 226 (346)
T cd07475 225 KV------------------------------------------------------------------------------ 226 (346)
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHcCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCC
Q 038881 454 GQQALLAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKG 533 (794)
Q Consensus 454 ~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~G 533 (794)
.....+.++.||+||
T Consensus 227 -----------------------------------------------------------------~~~~~~~~~~~S~~G 241 (346)
T cd07475 227 -----------------------------------------------------------------PNPNGGQMSGFSSWG 241 (346)
T ss_pred -----------------------------------------------------------------CCCCCCccCCCcCCC
Confidence 011135788999999
Q ss_pred CCCCCCCcccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhh----CCCCCHHH---
Q 038881 534 PSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTL----HPEWSPAA--- 606 (794)
Q Consensus 534 p~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~lsp~~--- 606 (794)
|+. ++++||||+|||.+|+++... +.|..++|||||||+|||++|||+|+ +|.|++.+
T Consensus 242 ~~~--~~~~~pdi~apG~~i~s~~~~-------------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~ 306 (346)
T cd07475 242 PTP--DLDLKPDITAPGGNIYSTVND-------------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVD 306 (346)
T ss_pred CCc--ccCcCCeEEeCCCCeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHH
Confidence 998 899999999999999998765 47889999999999999999999997 78999876
Q ss_pred -HHHHHHhcCccccCCCcccccCCCCCCCCCcccccccccccccC
Q 038881 607 -IKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQPNLAMD 650 (794)
Q Consensus 607 -ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 650 (794)
||++|++||.+.... ...+..+.+.++|+|+||+.+|++
T Consensus 307 ~ik~~l~~ta~~~~~~-----~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 307 LVKNLLMNTATPPLDS-----EDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred HHHHHHHhcCCccccc-----CCCCccCCccccCcchhcHHHhhC
Confidence 788999999853211 112446678899999999999985
No 7
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.4e-47 Score=409.23 Aligned_cols=296 Identities=29% Similarity=0.348 Sum_probs=230.3
Q ss_pred cccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeeccccc-ccccCCCCCC
Q 038881 156 NSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGY-AAAVGPLNSS 234 (794)
Q Consensus 156 ~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~-~~~~~~~~~~ 234 (794)
+.+|+.+++|+||+|||||+|||++||+|.++-. .+.++.+.++|..+. .. .....+
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~--------------------~~~~~~~~~d~~~~~~~~--~~~~~~ 60 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFG--------------------PGCKVAGGYDFVGDDYDG--TNPPVP 60 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCC--------------------CCceeccccccCCccccc--ccCCCC
Confidence 5899999999999999999999999999986411 112233333443221 00 000012
Q ss_pred CCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEE
Q 038881 235 FDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVL 314 (794)
Q Consensus 235 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVI 314 (794)
...+.|..||||||||||++...+ ..+.||||+|+|+.+|+++.. + ....+.++++|+++++++++||
T Consensus 61 ~~~~~d~~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~~--~-~~~~~~~~~ai~~a~~~~~~iI 128 (312)
T cd07489 61 DDDPMDCQGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFGCS--G-STTEDTIIAAFLRAYEDGADVI 128 (312)
T ss_pred CCCCCCCCCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeecCC--C-CCCHHHHHHHHHHHHhcCCCEE
Confidence 335667799999999999998621 345899999999999999865 3 4678889999999999999999
Q ss_pred EEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCC---CcCCCCCceEEeccccCCCCccceEEecCCeEEee
Q 038881 315 SVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDS---TVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKG 391 (794)
Q Consensus 315 N~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~---~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g 391 (794)
|||||... .+..+.+...+.++.++|+++|+||||+|.... ..+...+++|+||+++
T Consensus 129 n~S~g~~~-~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~------------------- 188 (312)
T cd07489 129 TASLGGPS-GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD------------------- 188 (312)
T ss_pred EeCCCcCC-CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec-------------------
Confidence 99999873 344577888888899999999999999986532 2234567888888631
Q ss_pred eecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccC
Q 038881 392 QSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQ 471 (794)
Q Consensus 392 ~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~ 471 (794)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCc
Q 038881 472 ENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGV 551 (794)
Q Consensus 472 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~ 551 (794)
+.||+|||+. +...||||+|||+
T Consensus 189 -------------------------------------------------------~~~s~~g~~~--~~~~kpdv~ApG~ 211 (312)
T cd07489 189 -------------------------------------------------------SYFSSWGPTN--ELYLKPDVAAPGG 211 (312)
T ss_pred -------------------------------------------------------CCccCCCCCC--CCCcCccEEcCCC
Confidence 4689999988 7889999999999
Q ss_pred eEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhC-CCCCHHHHHHHHHhcCccccCCCcccccCCC
Q 038881 552 TIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLH-PEWSPAAIKSAIMTTASIQDNNKGQILNASS 630 (794)
Q Consensus 552 ~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-p~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~ 630 (794)
+|+++++... +.|..++|||||||+|||++|||+|++ |.+++.+||++|++||.++...+..-. ..
T Consensus 212 ~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~--~~ 278 (312)
T cd07489 212 NILSTYPLAG-----------GGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSA--LP 278 (312)
T ss_pred CEEEeeeCCC-----------CceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCcc--cc
Confidence 9999987632 268999999999999999999999999 999999999999999998754321100 01
Q ss_pred CCCCCCcccccccccccccCCCccc
Q 038881 631 YKATPFSYGAGHIQPNLAMDPGLVY 655 (794)
Q Consensus 631 ~~~~~~~~G~G~vn~~~Al~~~lv~ 655 (794)
.++++.++|+|+||+.+|++..-.+
T Consensus 279 ~~~~~~~~G~G~vn~~~a~~~~~~~ 303 (312)
T cd07489 279 DLAPVAQQGAGLVNAYKALYATTTL 303 (312)
T ss_pred CCCCHhhcCcceeeHHHHhcCCccc
Confidence 1467789999999999999965433
No 8
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=1.9e-47 Score=429.84 Aligned_cols=407 Identities=22% Similarity=0.243 Sum_probs=236.4
Q ss_pred CCCCceEEEEecCCCCCCCCCCcC-CCCCCCCCccccccccCCCccccccccccceeecccc-cccccCCCC-CCCCCCC
Q 038881 163 RYGEDTIIGNLDTGVWPESKSFSD-EGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKG-YAAAVGPLN-SSFDTPR 239 (794)
Q Consensus 163 ~~G~GV~VaVIDTGId~~Hp~f~~-~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~-~~~~~~~~~-~~~~~~~ 239 (794)
.+|+||+|||||||||+.||+|++ ++.+++...|++....+... ....+...+.+. ........+ .+.....
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~ 75 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPP-----GGYYGGGEYTEEIINAALASDNPYDIVPSR 75 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCC-----ccccCceEEeHHHHHHHHhcCCccccCcCC
Confidence 479999999999999999999985 56789999999877654321 111111122210 000000111 1234567
Q ss_pred CCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCC-------CCCChHHHHHHHHHhHhC---
Q 038881 240 DKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTG-------NECYDADILAAFDMAIHD--- 309 (794)
Q Consensus 240 d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G-------~~~~~~~i~~ai~~a~~~--- 309 (794)
|..||||||||||||+..+ +..+.||||+|+|+++|++...... ..+...+++.||+|+++.
T Consensus 76 D~~GHGThvAGIiag~~~~--------~~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~ 147 (455)
T cd07478 76 DENGHGTHVAGIAAGNGDN--------NPDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALE 147 (455)
T ss_pred CCCCchHHHHHHHhcCCCC--------CCCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHH
Confidence 8999999999999998522 3456899999999999999876210 015788999999999874
Q ss_pred --CceEEEEccCCCC-CCCCCCHHHHHHHHHHhC-CcEEEEecCCCCCCCCCcCCC-CC------ceEEeccccCCCCcc
Q 038881 310 --GVDVLSVSLGGGP-SKFFNDSTAIGSFHAVKH-GMVVICSAGNSGPTDSTVSNI-AP------WQITVGASTMDRDFP 378 (794)
Q Consensus 310 --g~dVIN~SlG~~~-~~~~~~~~~~a~~~a~~~-Gv~vV~AAGN~G~~~~~~~~~-ap------~vitVgAs~~~~~~~ 378 (794)
.+.|||||||... .+...++++.++..+.++ |++||+||||+|....+.... .+ --+.|+.-.. .+.
T Consensus 148 ~~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~~~--~~~ 225 (455)
T cd07478 148 LNKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGEK--GFN 225 (455)
T ss_pred hCCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCCCc--ceE
Confidence 5789999999873 445667788888887776 999999999999755444321 00 0133332111 110
Q ss_pred ceEEec--CCeEEe-----eeecCCCCCC--CCceeceEEccchhhcccchhhccccCC-CCCCCCCccceEEEEecCCc
Q 038881 379 SYVVVS--NNKRYK-----GQSLSSKGLP--SNKLFPLISAADAKAANASTEVALLCEA-GTLDPKKVKGKILVCLRGDN 448 (794)
Q Consensus 379 ~~~~~~--~~~~~~-----g~~~~~~~~~--~~~~~plv~~~~~~~~~~~~~~~~~c~~-~~~~~~~~~gkivl~~~g~~ 448 (794)
-++-.. +...+. |+....-... ....+.+.+.. ...|-. ...++..-...|.+.
T Consensus 226 ~eiW~~~~d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~-----------t~i~v~y~~~~~~~g~~~i~i~----- 289 (455)
T cd07478 226 LEIWGDFPDRFSVSIISPSGESSGRINPGIGGSESYKFVFEG-----------TTVYVYYYLPEPYTGDQLIFIR----- 289 (455)
T ss_pred EEEecCCCCEEEEEEECCCCCccCccCcCCCcceeEEEEECC-----------eEEEEEEcCCCCCCCCeEEEEE-----
Confidence 000000 000000 0000000000 00000000000 000000 000000011111111
Q ss_pred hhhhHHHHHHHcCceEEEEeccCC-CCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEec------eeeecCC
Q 038881 449 ARIDKGQQALLAGAVGMVLANAQE-NGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRA------TTELGLK 521 (794)
Q Consensus 449 ~~~~~~~~~~~~Ga~gvi~~n~~~-~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~------~~~~~~~ 521 (794)
..+ ...|-.-+.++.... .+. ...++|...+..++..++ ..... .++... .++....
T Consensus 290 -----~~~-~~~GiW~i~~~~~~~~~g~----~~~Wlp~~~~~~~~t~f~----~~~~~--~tit~Pa~~~~vitVga~~ 353 (455)
T cd07478 290 -----FKN-IKPGIWKIRLTGVSITDGR----FDAWLPSRGLLSENTRFL----EPDPY--TTLTIPGTARSVITVGAYN 353 (455)
T ss_pred -----ccC-CCccceEEEEEeccCCCce----EEEEecCcCcCCCCCEee----cCCCC--ceEecCCCCCCcEEEEEEe
Confidence 001 112333333332211 111 112333332222221111 11111 122211 1122222
Q ss_pred -CCCccccccCCCCCCCCCCcccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhC-
Q 038881 522 -PAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLH- 599 (794)
Q Consensus 522 -~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~- 599 (794)
..+.++.||||||+. ++++||||+|||++|+++.+. +.|..++|||||||||||++|||+|++
T Consensus 354 ~~~~~~~~~Ss~G~~~--~~~~kpdi~APG~~i~s~~~~-------------~~~~~~sGTS~Aap~vaG~aALl~~~~~ 418 (455)
T cd07478 354 QNNNSIAIFSGRGPTR--DGRIKPDIAAPGVNILTASPG-------------GGYTTRSGTSVAAAIVAGACALLLQWGI 418 (455)
T ss_pred CCCCcccCccCCCcCC--CCCcCceEEecCCCEEEeecC-------------CcEEeeCcHHHHHHHHHHHHHHHHHhch
Confidence 235699999999998 899999999999999999986 489999999999999999999999975
Q ss_pred -----CCCCHHHHHHHHHhcCccccCCCcccccCCCCCCCCCccccc
Q 038881 600 -----PEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAG 641 (794)
Q Consensus 600 -----p~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 641 (794)
|.|++++||++|++||+++.. ..+++++||||
T Consensus 419 ~~~~~p~~~~~~ik~~L~~tA~~~~~----------~~~pn~~~GyG 455 (455)
T cd07478 419 VRGNDPYLYGEKIKTYLIRGARRRPG----------DEYPNPEWGYG 455 (455)
T ss_pred hccCCCCCCHHHHHHHHHHhCccCCC----------CCCCCCCCCCC
Confidence 567999999999999998742 25678999998
No 9
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-47 Score=396.18 Aligned_cols=336 Identities=24% Similarity=0.326 Sum_probs=264.8
Q ss_pred ccccCCccEEEEeCCCCCCCCccccccccchHHHHHHHHHhcCCCCCC--C----------------cceEEEec---ce
Q 038881 45 LFSMLQTHHCCQKGAHSHGPELSAVDLHRVTESHYEFLGSFLHGNDNP--E----------------DAIFYSYT---RH 103 (794)
Q Consensus 45 ~~~~~~~~YIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~----------------~~~~~~y~---~~ 103 (794)
....++++|||.|+..... +....|.++++...+..... . ..+.+.|. .+
T Consensus 75 i~~~~~~~YiV~f~~~~~q---------~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~ 145 (501)
T KOG1153|consen 75 IEEALPSRYIVVFKPDASQ---------QKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRV 145 (501)
T ss_pred hhcccccceEEEeCCCccH---------HHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccch
Confidence 4457899999999976543 66778888888776432210 0 01334443 38
Q ss_pred eeeEEEEeCHHHHHHHHcCCCeEEEEecceecccc-----cCCccccccccCCCccc--cccc----cccCCCCceEEEE
Q 038881 104 INGFAAKLDDAVAAEIAKHPKVVSVFLNQGRKLHT-----THSWEFLGLERNGRVES--NSIW----KKARYGEDTIIGN 172 (794)
Q Consensus 104 ~ng~s~~~~~~~i~~L~~~p~V~~v~~~~~~~~~~-----~~s~~~~gl~~~~~~~~--~~~~----~~g~~G~GV~VaV 172 (794)
|+|+...++..-+..++++|-++.++++..++... .+....|||.++++... ..-| ..-..|+||..+|
T Consensus 146 ~~~y~~~ft~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv 225 (501)
T KOG1153|consen 146 FRGYTGYFTGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYV 225 (501)
T ss_pred hhccccccccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEE
Confidence 88999999999999999999999999988776543 22333457766665421 1112 1223899999999
Q ss_pred ecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCCCCCCCCCCcceeecc
Q 038881 173 LDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTHTLSTA 252 (794)
Q Consensus 173 IDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGii 252 (794)
+||||+.+||+|.++ +.|- .| +.. -....|++||||||||+|
T Consensus 226 ~DTGVni~H~dFegR------a~wG-a~-------------------i~~------------~~~~~D~nGHGTH~AG~I 267 (501)
T KOG1153|consen 226 LDTGVNIEHPDFEGR------AIWG-AT-------------------IPP------------KDGDEDCNGHGTHVAGLI 267 (501)
T ss_pred ecccccccccccccc------eecc-cc-------------------cCC------------CCcccccCCCcceeeeee
Confidence 999999999999876 3341 11 110 124568999999999999
Q ss_pred cccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhC---------CceEEEEccCCCCC
Q 038881 253 GGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHD---------GVDVLSVSLGGGPS 323 (794)
Q Consensus 253 ag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~---------g~dVIN~SlG~~~~ 323 (794)
+++. .|||.+++|+++||++++ | ++..+++++++|++++. +..|.|||+|+.
T Consensus 268 ~sKt--------------~GvAK~s~lvaVKVl~~d--G-sGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~-- 328 (501)
T KOG1153|consen 268 GSKT--------------FGVAKNSNLVAVKVLRSD--G-SGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGF-- 328 (501)
T ss_pred eccc--------------cccccccceEEEEEeccC--C-cEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCc--
Confidence 9986 688999999999999999 5 78999999999999975 578999999997
Q ss_pred CCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCC-CCCceEEeccccCCCCccceEEecCCeEEeeeecCCCCCCCC
Q 038881 324 KFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSN-IAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSN 402 (794)
Q Consensus 324 ~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~-~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 402 (794)
..-++..|+++|.+.|+++++||||+..++|..++ .+..+|||||++..
T Consensus 329 --~S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~---------------------------- 378 (501)
T KOG1153|consen 329 --RSAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN---------------------------- 378 (501)
T ss_pred --ccHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc----------------------------
Confidence 34567888889999999999999999999888775 78899999997542
Q ss_pred ceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCccccCCCC
Q 038881 403 KLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELLADPH 482 (794)
Q Consensus 403 ~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~ 482 (794)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCceEEeeecCCCC
Q 038881 483 LLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAG 562 (794)
Q Consensus 483 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~ 562 (794)
+.+|.||+||+|+ ||.|||++|+|+|.++..
T Consensus 379 -----------------------------------------D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~~ 409 (501)
T KOG1153|consen 379 -----------------------------------------DTIAFFSNWGKCV--------DIFAPGVNILSSWIGSNN 409 (501)
T ss_pred -----------------------------------------cchhhhcCcccee--------eeecCchhhhhhhhcCcc
Confidence 5899999999999 999999999999988532
Q ss_pred CCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCC---------CCHHHHHHHHHhcCc
Q 038881 563 PTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPE---------WSPAAIKSAIMTTAS 616 (794)
Q Consensus 563 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~---------lsp~~ik~~L~~TA~ 616 (794)
.....||||||+|||||++|.++.++|. .+|.++|..+..-..
T Consensus 410 -----------at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 410 -----------ATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred -----------chheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 5678999999999999999999999883 378888877776544
No 10
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=4.6e-46 Score=392.15 Aligned_cols=248 Identities=24% Similarity=0.271 Sum_probs=203.1
Q ss_pred cccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCC
Q 038881 158 IWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDT 237 (794)
Q Consensus 158 ~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~ 237 (794)
+|..+++|+||+|||||+|||++||+|.+....+. ..+... ...
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~-------------------------~~~~~~-----------~~~ 45 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPL-------------------------FTYAAA-----------ACQ 45 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccc-------------------------cCcccc-----------CCC
Confidence 79999999999999999999999999986421110 000000 124
Q ss_pred CCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEEc
Q 038881 238 PRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVS 317 (794)
Q Consensus 238 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~S 317 (794)
..|..+|||||||||+|+. ...+.||||+|+|+.+|++..... .++..++++||++|+++|++|||||
T Consensus 46 ~~~~~gHGT~VAgii~g~~----------~~~~~GvAp~a~i~~~~v~~~~~~--~~~~~~i~~ai~~a~~~g~~VIN~S 113 (267)
T cd07476 46 DGGASAHGTHVASLIFGQP----------CSSVEGIAPLCRGLNIPIFAEDRR--GCSQLDLARAINLALEQGAHIINIS 113 (267)
T ss_pred CCCCCCcHHHHHHHHhcCC----------CCCceeECcCCeEEEEEEEeCCCC--CCCHHHHHHHHHHHHHCCCCEEEec
Confidence 4567899999999999874 123589999999999999987632 2457899999999999999999999
Q ss_pred cCCCCC-CCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEeccccCCCCccceEEecCCeEEeeeecCC
Q 038881 318 LGGGPS-KFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSS 396 (794)
Q Consensus 318 lG~~~~-~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~ 396 (794)
||.... ......+..++..+.++|++||+||||+|.....++...|++|+|||++.+
T Consensus 114 ~G~~~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~---------------------- 171 (267)
T cd07476 114 GGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD---------------------- 171 (267)
T ss_pred CCcCCCCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC----------------------
Confidence 997632 234456778888899999999999999998777777788999999986431
Q ss_pred CCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCcc
Q 038881 397 KGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNE 476 (794)
Q Consensus 397 ~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~ 476 (794)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCceEEee
Q 038881 477 LLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAA 556 (794)
Q Consensus 477 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~Sa 556 (794)
+.++.||+||+.. .||||+|||.+|+++
T Consensus 172 -----------------------------------------------~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~ 199 (267)
T cd07476 172 -----------------------------------------------GLPLKFSNWGADY-----RKKGILAPGENILGA 199 (267)
T ss_pred -----------------------------------------------CCeeeecCCCCCC-----CCceEEecCCCceee
Confidence 2456799999764 388999999999998
Q ss_pred ecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCC----CCHHHHHHHHHhcCccccC
Q 038881 557 YTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPE----WSPAAIKSAIMTTASIQDN 620 (794)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~----lsp~~ik~~L~~TA~~~~~ 620 (794)
.+. +.|..++|||||||||||++|||+|++|. ++|++||++|++||+++..
T Consensus 200 ~~~-------------~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 200 ALG-------------GEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred cCC-------------CCeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 876 47899999999999999999999999887 8999999999999999854
No 11
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.6e-45 Score=382.81 Aligned_cols=238 Identities=26% Similarity=0.331 Sum_probs=193.8
Q ss_pred eEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCCCCCCCCCCcc
Q 038881 168 TIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTH 247 (794)
Q Consensus 168 V~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~d~~gHGTh 247 (794)
|+|||||||||++||+|+++ ++..+++.. ....|..+||||
T Consensus 1 V~VavIDsGvd~~hp~l~~~--------------------------~~~~~~~~~-------------~~~~~~~~HGT~ 41 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAV--------------------------VIARLFFAG-------------PGAPAPSAHGTA 41 (239)
T ss_pred CEEEEEeCCCCCCCcccccC--------------------------ccccccCCC-------------CCCCCCCCCHHH
Confidence 68999999999999999753 111111111 134568899999
Q ss_pred eeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEEccCCCCCCCCC
Q 038881 248 TLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGGGPSKFFN 327 (794)
Q Consensus 248 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~ 327 (794)
|||||++... .. .||||+|+|+.+|++.....+..++..++++||+||++.+++|||||||+. ..
T Consensus 42 vAgiia~~~~---------~~--~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~----~~ 106 (239)
T cd05561 42 VASLLAGAGA---------QR--PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGP----PN 106 (239)
T ss_pred HHHHHhCCCC---------CC--cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCC----CC
Confidence 9999999751 11 799999999999999865311236788999999999999999999999975 23
Q ss_pred CHHHHHHHHHHhCCcEEEEecCCCCCCC-CCcCCCCCceEEeccccCCCCccceEEecCCeEEeeeecCCCCCCCCceec
Q 038881 328 DSTAIGSFHAVKHGMVVICSAGNSGPTD-STVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFP 406 (794)
Q Consensus 328 ~~~~~a~~~a~~~Gv~vV~AAGN~G~~~-~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p 406 (794)
..+..++.++.++|++||+||||+|+.. ..++...+++|+||+++.+
T Consensus 107 ~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~-------------------------------- 154 (239)
T cd05561 107 ALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDAR-------------------------------- 154 (239)
T ss_pred HHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCC--------------------------------
Confidence 5677788899999999999999999764 3455567899999985432
Q ss_pred eEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCccccCCCCcccE
Q 038881 407 LISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELLADPHLLPA 486 (794)
Q Consensus 407 lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~ 486 (794)
T Consensus 155 -------------------------------------------------------------------------------- 154 (239)
T cd05561 155 -------------------------------------------------------------------------------- 154 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCceEEeeecCCCCCCCC
Q 038881 487 SHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNE 566 (794)
Q Consensus 487 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~ 566 (794)
+.++.||++|+.. ||.|||.+|+++.+.
T Consensus 155 -------------------------------------~~~~~~s~~g~~~--------di~ApG~~i~~~~~~------- 182 (239)
T cd05561 155 -------------------------------------GRLYREANRGAHV--------DFAAPGVDVWVAAPG------- 182 (239)
T ss_pred -------------------------------------CCccccCCCCCcc--------eEEccccceecccCC-------
Confidence 3567899999987 999999999987654
Q ss_pred CCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccccCCCcccccCCCCCCCCCccccc
Q 038881 567 DYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAG 641 (794)
Q Consensus 567 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 641 (794)
+.|..++|||||||||||++|||+|++| ++++|||++|++||+++.. +..+..||||
T Consensus 183 ------~~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~-----------~~~d~~~G~G 239 (239)
T cd05561 183 ------GGYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGP-----------PGRDPVFGYG 239 (239)
T ss_pred ------CCEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCC-----------CCcCCCcCCC
Confidence 4799999999999999999999999999 9999999999999998743 3456789988
No 12
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.3e-45 Score=392.01 Aligned_cols=285 Identities=39% Similarity=0.552 Sum_probs=218.1
Q ss_pred CCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCC-------CCCC
Q 038881 165 GEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNS-------SFDT 237 (794)
Q Consensus 165 G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~-------~~~~ 237 (794)
|+||+|||||+|||++||+|.+.. ..+.++...++|.... ..+.+. ....
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~--------------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 57 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG--------------------FPNDKVKGGYDFVDDD---YDPMDTRPYPSPLGDAS 57 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC--------------------CCCCceeeeeECccCC---CCcccccccccccccCC
Confidence 899999999999999999997531 2233444555554321 000000 1122
Q ss_pred CCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEEc
Q 038881 238 PRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVS 317 (794)
Q Consensus 238 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~S 317 (794)
..|..+|||||||+|+|...+ ...+.||||+|+|+.+|+++.. + .+...+++++|+++++++++|||||
T Consensus 58 ~~~~~~HGT~vAgiiag~~~n--------~~~~~Giap~a~i~~~~~~~~~--~-~~~~~~~~~ai~~a~~~~~~Iin~S 126 (295)
T cd07474 58 AGDATGHGTHVAGIIAGNGVN--------VGTIKGVAPKADLYAYKVLGPG--G-SGTTDVIIAAIEQAVDDGMDVINLS 126 (295)
T ss_pred CCCCCCcHHHHHHHHhcCCCc--------cCceEeECCCCeEEEEEeecCC--C-CCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 456899999999999987522 3345899999999999999854 2 4788999999999999999999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCc--CCCCCceEEeccccCCCCccceEEecCCeEEeeeecC
Q 038881 318 LGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTV--SNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLS 395 (794)
Q Consensus 318 lG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~--~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~ 395 (794)
||.... ...+.+..++.++.++|++||+||||+|...... +...+++|+|||++....
T Consensus 127 ~g~~~~-~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~------------------- 186 (295)
T cd07474 127 LGSSVN-GPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV------------------- 186 (295)
T ss_pred CCCCCC-CCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc-------------------
Confidence 998732 2456788888899999999999999998765544 346789999998642100
Q ss_pred CCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCc
Q 038881 396 SKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGN 475 (794)
Q Consensus 396 ~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~ 475 (794)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccC-CCCCCCCCCcccCceEeCCceEE
Q 038881 476 ELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSS-KGPSSVAPEILKPDITAPGVTII 554 (794)
Q Consensus 476 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS-~Gp~~~~~~~~KPDI~APG~~I~ 554 (794)
........|++ .|++. ...+||||+|||++|+
T Consensus 187 ---------------------------------------------~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~ 219 (295)
T cd07474 187 ---------------------------------------------AEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIM 219 (295)
T ss_pred ---------------------------------------------CCCCceeccCCCCCCCC--CCCcCCCEECCcCceE
Confidence 00123334444 45554 7889999999999999
Q ss_pred eeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccccCCCcccccCCCCCCC
Q 038881 555 AAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKAT 634 (794)
Q Consensus 555 Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~ 634 (794)
+++... ...|..++|||||||+|||++|||+|++|+|++++||++|++||++....+. ..++
T Consensus 220 ~~~~~~-----------~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~-------~~~~ 281 (295)
T cd07474 220 STAPGS-----------GTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG-------VVYP 281 (295)
T ss_pred eeccCC-----------CCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC-------CcCC
Confidence 998763 1378999999999999999999999999999999999999999998755432 1235
Q ss_pred CCcccccccccccc
Q 038881 635 PFSYGAGHIQPNLA 648 (794)
Q Consensus 635 ~~~~G~G~vn~~~A 648 (794)
+..+|+|+||+.+|
T Consensus 282 ~~~~G~G~l~~~~A 295 (295)
T cd07474 282 VSRQGAGRVDALRA 295 (295)
T ss_pred hhccCcceeccccC
Confidence 67899999999987
No 13
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.8e-44 Score=381.12 Aligned_cols=245 Identities=30% Similarity=0.375 Sum_probs=196.8
Q ss_pred ceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCC-CCCCCCCC
Q 038881 167 DTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDT-PRDKDGHG 245 (794)
Q Consensus 167 GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~-~~d~~gHG 245 (794)
||+|||||||||++||+|.... ...+.++.+.++|.+. ... ..|..+||
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~-------------------~~~~~~i~~~~~~~~~-----------~~~~~~~~~~HG 50 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKH-------------------LFKNLRILGEYDFVDN-----------SNNTNYTDDDHG 50 (261)
T ss_pred CCEEEEEccCCCccCcchhhhc-------------------cccCCceeeeecCccC-----------CCCCCCCCCCch
Confidence 7999999999999999994210 1123456667777654 112 36788999
Q ss_pred cceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEEccCCCCCCC
Q 038881 246 THTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGGGPSKF 325 (794)
Q Consensus 246 ThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~ 325 (794)
|||||||+|.. .+.+.||||+|+|+.+|+.....+. ......++.|++++.+.+++|||||||......
T Consensus 51 T~vagiia~~~----------~~~~~GvAp~a~l~~~~~~~~~~~~-~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~ 119 (261)
T cd07493 51 TAVLSTMAGYT----------PGVMVGTAPNASYYLARTEDVASET-PVEEDNWVAAAEWADSLGVDIISSSLGYTTFDN 119 (261)
T ss_pred hhhheeeeeCC----------CCCEEEeCCCCEEEEEEecccCCcc-cccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCC
Confidence 99999999974 2346899999999999997644222 245667899999999999999999999873221
Q ss_pred C------------CCHHHHHHHHHHhCCcEEEEecCCCCCCC---CCcCCCCCceEEeccccCCCCccceEEecCCeEEe
Q 038881 326 F------------NDSTAIGSFHAVKHGMVVICSAGNSGPTD---STVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYK 390 (794)
Q Consensus 326 ~------------~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~---~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~ 390 (794)
. ...+..++..+.++|++||+||||+|... ...+...+++|+|||.+.+
T Consensus 120 ~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~~---------------- 183 (261)
T cd07493 120 PTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDAN---------------- 183 (261)
T ss_pred cccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEeccC----------------
Confidence 1 13467788889999999999999999763 3455577999999985321
Q ss_pred eeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEecc
Q 038881 391 GQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANA 470 (794)
Q Consensus 391 g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~ 470 (794)
T Consensus 184 -------------------------------------------------------------------------------- 183 (261)
T cd07493 184 -------------------------------------------------------------------------------- 183 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCC
Q 038881 471 QENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPG 550 (794)
Q Consensus 471 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG 550 (794)
+.++.||++||+. ++++||||+|||
T Consensus 184 -----------------------------------------------------~~~~~~S~~G~~~--~~~~~pdi~a~G 208 (261)
T cd07493 184 -----------------------------------------------------GNKASFSSIGPTA--DGRLKPDVMALG 208 (261)
T ss_pred -----------------------------------------------------CCCCccCCcCCCC--CCCcCCceEecC
Confidence 3678899999987 899999999999
Q ss_pred ceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCc
Q 038881 551 VTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTAS 616 (794)
Q Consensus 551 ~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 616 (794)
.+|++.... +.|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 209 ~~~~~~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 209 TGIYVINGD-------------GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred CCeEEEcCC-------------CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999985433 47899999999999999999999999999999999999999985
No 14
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=3.7e-44 Score=379.23 Aligned_cols=247 Identities=32% Similarity=0.414 Sum_probs=194.7
Q ss_pred CCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCCCCCCCCC
Q 038881 165 GEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGH 244 (794)
Q Consensus 165 G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~d~~gH 244 (794)
|+||+|||||+|||++||+|.+. |.+... ..+...+.+.+.. .....+.|..+|
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~----------~~~~~~~~~~d~~--------~~~~~~~d~~~H 54 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGG----------GSADHDYNWFDPV--------GNTPLPYDDNGH 54 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCC----------CCcccccccccCC--------CCCCCCCCCCCc
Confidence 89999999999999999999764 111000 0000001111100 012345678899
Q ss_pred CcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHh------------CCce
Q 038881 245 GTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIH------------DGVD 312 (794)
Q Consensus 245 GThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~------------~g~d 312 (794)
||||||||+|... .+...||||+|+|+.+|+++.. + +...+++++++++++ .+++
T Consensus 55 GT~vagii~g~~~---------~~~~~GvAp~a~i~~~~~~~~~--~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 121 (264)
T cd07481 55 GTHTMGTMVGNDG---------DGQQIGVAPGARWIACRALDRN--G--GNDADYLRCAQWMLAPTDSAGNPADPDLAPD 121 (264)
T ss_pred hhhhhhheeecCC---------CCCceEECCCCeEEEEEeecCC--C--CcHHHHHHHHHHHHhcccccccccccccCCe
Confidence 9999999998741 2223899999999999999876 3 778899999999875 7899
Q ss_pred EEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCC---cCCCCCceEEeccccCCCCccceEEecCCeEE
Q 038881 313 VLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDST---VSNIAPWQITVGASTMDRDFPSYVVVSNNKRY 389 (794)
Q Consensus 313 VIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~---~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~ 389 (794)
|||||||.... ....+..++..+.++|++||+||||++..... .+...+++|+|||++.+
T Consensus 122 Iin~S~G~~~~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~--------------- 184 (264)
T cd07481 122 VINNSWGGPSG--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN--------------- 184 (264)
T ss_pred EEEeCCCcCCC--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC---------------
Confidence 99999998732 24556667778889999999999999865443 34567899999985432
Q ss_pred eeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEec
Q 038881 390 KGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLAN 469 (794)
Q Consensus 390 ~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n 469 (794)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeC
Q 038881 470 AQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAP 549 (794)
Q Consensus 470 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~AP 549 (794)
+.++.||++||.. .+++||||+||
T Consensus 185 ------------------------------------------------------~~~~~~S~~g~~~--~~~~~~dv~Ap 208 (264)
T cd07481 185 ------------------------------------------------------DVLADFSSRGPST--YGRIKPDISAP 208 (264)
T ss_pred ------------------------------------------------------CCCccccCCCCCC--CCCcCceEEEC
Confidence 3678899999988 79999999999
Q ss_pred CceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCC--CCHHHHHHHHHhcCc
Q 038881 550 GVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPE--WSPAAIKSAIMTTAS 616 (794)
Q Consensus 550 G~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~--lsp~~ik~~L~~TA~ 616 (794)
|.+|+++.+. +.|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 209 G~~i~s~~~~-------------~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 209 GVNIRSAVPG-------------GGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred CCCeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 9999999876 37899999999999999999999999999 999999999999985
No 15
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=4.9e-44 Score=382.56 Aligned_cols=264 Identities=24% Similarity=0.320 Sum_probs=189.6
Q ss_pred CceEEEEecCCCCCCCCCCcCCCCCCCCCccccccc---cCCC-ccccccccccceeeccccc-cc-c--cCCC------
Q 038881 166 EDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICE---NDKD-AKFLCNRKLIGARYFNKGY-AA-A--VGPL------ 231 (794)
Q Consensus 166 ~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~---~g~~-~~~~~n~ki~g~~~~~~~~-~~-~--~~~~------ 231 (794)
++|+|||||||||++||+|++. .|....+ .|.+ ....+-.+ +++++|...+ .. . ..+.
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~-------~~~n~~e~~~~~~d~d~ng~~dd-~~g~~f~~~~~~~~~~~~~~~~~~~~~ 72 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGK-------LWINKKEIPGNGIDDDNNGYIDD-VNGWNFLGQYDPRRIVGDDPYDLTEKG 72 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhh-------hhcCCcccCCCCccCCCCCcccc-ccCeeccCCcccccccccCcccccccc
Confidence 6899999999999999999864 3322211 1111 11111111 3445554321 00 0 0000
Q ss_pred --CCCCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhC
Q 038881 232 --NSSFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHD 309 (794)
Q Consensus 232 --~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~ 309 (794)
+.+...+.+..+|||||||||++...+ +..+.||||+|+|+.+|++... .....++++||+||++.
T Consensus 73 ~g~~~~~~~~~~~gHGT~VAGiIaa~~~n--------~~g~~GvAp~a~i~~~k~~~~g----~~~~~~i~~Ai~~a~~~ 140 (291)
T cd07483 73 YGNNDVNGPISDADHGTHVAGIIAAVRDN--------GIGIDGVADNVKIMPLRIVPNG----DERDKDIANAIRYAVDN 140 (291)
T ss_pred ccccccCCCCCCCCcHHHHHHHHhCcCCC--------CCceEEECCCCEEEEEEEecCC----CcCHHHHHHHHHHHHHC
Confidence 011234456899999999999997521 1235899999999999998643 35778999999999999
Q ss_pred CceEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCc---C--------CCCCceEEeccccCCCCcc
Q 038881 310 GVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTV---S--------NIAPWQITVGASTMDRDFP 378 (794)
Q Consensus 310 g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~---~--------~~ap~vitVgAs~~~~~~~ 378 (794)
|++|||||||.... .....+..++..+.++|+++|+||||+|...... + ...+++|+|||++...
T Consensus 141 g~~IiN~S~G~~~~-~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~--- 216 (291)
T cd07483 141 GAKVINMSFGKSFS-PNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY--- 216 (291)
T ss_pred CCcEEEeCCCCCCC-CccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC---
Confidence 99999999997632 2234567777889999999999999998643211 1 1235677777653321
Q ss_pred ceEEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHH
Q 038881 379 SYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQAL 458 (794)
Q Consensus 379 ~~~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~ 458 (794)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCC
Q 038881 459 LAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVA 538 (794)
Q Consensus 459 ~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~ 538 (794)
....++.||++|+.
T Consensus 217 ---------------------------------------------------------------~~~~~~~~Sn~G~~--- 230 (291)
T cd07483 217 ---------------------------------------------------------------ENNLVANFSNYGKK--- 230 (291)
T ss_pred ---------------------------------------------------------------CcccccccCCCCCC---
Confidence 01247889999974
Q ss_pred CCcccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCc
Q 038881 539 PEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTAS 616 (794)
Q Consensus 539 ~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 616 (794)
+|||.|||.+|+++.+. +.|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 231 ----~vdi~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 231 ----NVDVFAPGERIYSTTPD-------------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred ----ceEEEeCCCCeEeccCc-------------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 34999999999998765 47999999999999999999999999999999999999999984
No 16
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=2.5e-43 Score=384.36 Aligned_cols=223 Identities=26% Similarity=0.313 Sum_probs=167.9
Q ss_pred CCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEEcc
Q 038881 239 RDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSL 318 (794)
Q Consensus 239 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~Sl 318 (794)
.|+.+|||||||||||+.. .+..+.||||+|+|+.+|+++... |..+....+++||++|++.+++||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~--------~~~~~~GVAP~A~I~svkv~d~~~-gs~~t~~~l~~ai~~ai~~gadVIN~Sl 252 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFP--------EEPERNGVAPGAQIVSIKIGDTRL-GSMETGTALVRAMIAAIETKCDLINMSY 252 (412)
T ss_pred CCCCCCHHHHHHHHhCCCC--------CCCceEEecCCCeEEEEEeccCCC-CCccchHHHHHHHHHHHHcCCCEEEecC
Confidence 3678999999999999742 233468999999999999987542 2123346799999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHH-HHhCCcEEEEecCCCCCCCCCcCC---CCCceEEeccccCCCCccceEEecCCeEEeeeec
Q 038881 319 GGGPSKFFNDSTAIGSFH-AVKHGMVVICSAGNSGPTDSTVSN---IAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSL 394 (794)
Q Consensus 319 G~~~~~~~~~~~~~a~~~-a~~~Gv~vV~AAGN~G~~~~~~~~---~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~ 394 (794)
|..........+..++.+ +.++|++||+||||+|+..+++.. .++++|+|||+.........
T Consensus 253 G~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~-------------- 318 (412)
T cd04857 253 GEATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE-------------- 318 (412)
T ss_pred CcCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc--------------
Confidence 987331112233334443 457899999999999988777653 36899999996432210000
Q ss_pred CCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCC
Q 038881 395 SSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENG 474 (794)
Q Consensus 395 ~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~ 474 (794)
| .
T Consensus 319 --------------y----------------~------------------------------------------------ 320 (412)
T cd04857 319 --------------Y----------------S------------------------------------------------ 320 (412)
T ss_pred --------------c----------------c------------------------------------------------
Confidence 0 0
Q ss_pred ccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCceEE
Q 038881 475 NELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTII 554 (794)
Q Consensus 475 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~ 554 (794)
......+.++.||||||+. ++++||||+|||+.|.
T Consensus 321 -------------------------------------------~~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~ 355 (412)
T cd04857 321 -------------------------------------------LREKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIA 355 (412)
T ss_pred -------------------------------------------cccccCCccccccccCCcc--cCCcCceEEeCCCcEE
Confidence 0000125789999999998 9999999999999998
Q ss_pred eeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHh----hCCCCCHHHHHHHHHhcCccc
Q 038881 555 AAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKT----LHPEWSPAAIKSAIMTTASIQ 618 (794)
Q Consensus 555 Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~lsp~~ik~~L~~TA~~~ 618 (794)
|.-... ...|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 356 s~p~~~-----------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 356 SVPNWT-----------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred EcccCC-----------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 752221 13789999999999999999999975 478999999999999999864
No 17
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=2.3e-43 Score=375.01 Aligned_cols=264 Identities=26% Similarity=0.335 Sum_probs=202.2
Q ss_pred ccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCC
Q 038881 157 SIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFD 236 (794)
Q Consensus 157 ~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~ 236 (794)
++|..+++|+||+|+|||||||++||+|.+....... ......+.+... ......
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~~------------------~~~~~~~~~~~~-------~~~~~~ 55 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGDGY------------------DPAVNGYNFVPN-------VGDIDN 55 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCCCc------------------ccccCCcccccc-------cCCcCC
Confidence 4799999999999999999999999999865110000 000000011000 000123
Q ss_pred CCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEE
Q 038881 237 TPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSV 316 (794)
Q Consensus 237 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~ 316 (794)
...|..||||||||||++...+....-|.+ .+.|+||+|+|+.+|+++.. + .+....++++|+++++.+++||||
T Consensus 56 ~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~--~-~~~~~~~~~ai~~a~~~g~~Vin~ 130 (273)
T cd07485 56 DVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGR--Y-YVGDDAVAAAIVYAADNGAVILQN 130 (273)
T ss_pred CCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCC--C-CccHHHHHHHHHHHHHcCCcEEEe
Confidence 455788999999999998753222111221 34679999999999999876 2 478889999999999999999999
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHhC-------CcEEEEecCCCCCCCCCcCCCCCceEEeccccCCCCccceEEecCCeEE
Q 038881 317 SLGGGPSKFFNDSTAIGSFHAVKH-------GMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFPSYVVVSNNKRY 389 (794)
Q Consensus 317 SlG~~~~~~~~~~~~~a~~~a~~~-------Gv~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~ 389 (794)
|||......+...+..++..+.++ |++||+||||++......+...+++|+||+++.+
T Consensus 131 S~g~~~~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~--------------- 195 (273)
T cd07485 131 SWGGTGGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN--------------- 195 (273)
T ss_pred cCCCCCccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC---------------
Confidence 999874334556677777888888 9999999999998877667778999999985432
Q ss_pred eeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEec
Q 038881 390 KGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLAN 469 (794)
Q Consensus 390 ~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n 469 (794)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeC
Q 038881 470 AQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAP 549 (794)
Q Consensus 470 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~AP 549 (794)
+.++.||++|+.. ||+||
T Consensus 196 ------------------------------------------------------~~~~~~S~~g~~~--------~i~ap 213 (273)
T cd07485 196 ------------------------------------------------------DNKASFSNYGRWV--------DIAAP 213 (273)
T ss_pred ------------------------------------------------------CCcCccccCCCce--------EEEeC
Confidence 3567899999987 99999
Q ss_pred Cc-eEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCC-CCHHHHHHHHHhc
Q 038881 550 GV-TIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPE-WSPAAIKSAIMTT 614 (794)
Q Consensus 550 G~-~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~-lsp~~ik~~L~~T 614 (794)
|. .|+++++.... ...+.|..++|||||||+|||++|||+|++|+ |+|+|||++|++|
T Consensus 214 G~~~i~~~~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 214 GVGTILSTVPKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred CCCccccccccccC-------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 99 89888765321 11247899999999999999999999999999 9999999999986
No 18
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.3e-43 Score=370.87 Aligned_cols=257 Identities=31% Similarity=0.462 Sum_probs=204.3
Q ss_pred CCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCCCCCCCCC
Q 038881 165 GEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGH 244 (794)
Q Consensus 165 G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~d~~gH 244 (794)
|+||+|+|||+|||++||+|.+... ..+.+.... .......|..+|
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~--------------------------~~~~~~~~~--------~~~~~~~d~~~H 46 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRII--------------------------RFADFVNTV--------NGRTTPYDDNGH 46 (264)
T ss_pred CCCcEEEEEeCCCCCCCcccccccc--------------------------ccccccccc--------cCCCCCCCCCCc
Confidence 8999999999999999999976411 111111100 012355677899
Q ss_pred CcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhC----CceEEEEccCC
Q 038881 245 GTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHD----GVDVLSVSLGG 320 (794)
Q Consensus 245 GThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~----g~dVIN~SlG~ 320 (794)
||||||||+|..... ...+.||||+|+|+.+|+++.. + .....++++||+++++. +++|||||||.
T Consensus 47 GT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~--~-~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~ 116 (264)
T cd07487 47 GTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDS--G-SGSESDIIAGIDWVVENNEKYNIRVVNLSLGA 116 (264)
T ss_pred hHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCC--C-CccHHHHHHHHHHHHhhccccCceEEEeccCC
Confidence 999999999985221 3446899999999999999877 3 46788999999999998 99999999998
Q ss_pred CCC-CCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCC--CcCCCCCceEEeccccCCCCccceEEecCCeEEeeeecCCC
Q 038881 321 GPS-KFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDS--TVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSK 397 (794)
Q Consensus 321 ~~~-~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~--~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~ 397 (794)
... ....+.+..++.++.++|++||+||||++.... ..+...+++|+|||++.+...
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~~-------------------- 176 (264)
T cd07487 117 PPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGPH-------------------- 176 (264)
T ss_pred CCCCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCCC--------------------
Confidence 842 446678888999999999999999999998765 444567899999996543200
Q ss_pred CCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCccc
Q 038881 398 GLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNEL 477 (794)
Q Consensus 398 ~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~ 477 (794)
T Consensus 177 -------------------------------------------------------------------------------- 176 (264)
T cd07487 177 -------------------------------------------------------------------------------- 176 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCceEEeee
Q 038881 478 LADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAY 557 (794)
Q Consensus 478 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~Sa~ 557 (794)
...++.||++||+. ++++||||+|||++|++..
T Consensus 177 ---------------------------------------------~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~ 209 (264)
T cd07487 177 ---------------------------------------------DDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCR 209 (264)
T ss_pred ---------------------------------------------CccccccccCCCCC--CCCcCCCEEccccceEecc
Confidence 02478899999998 8999999999999999986
Q ss_pred cCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCc
Q 038881 558 TEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTAS 616 (794)
Q Consensus 558 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 616 (794)
+.... ......+.|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 210 ~~~~~----~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 210 SPGGN----PGAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred ccccc----cCCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 54211 11122357899999999999999999999999999999999999999984
No 19
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=5.8e-43 Score=368.46 Aligned_cols=233 Identities=35% Similarity=0.488 Sum_probs=196.4
Q ss_pred cccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCC
Q 038881 158 IWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDT 237 (794)
Q Consensus 158 ~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~ 237 (794)
+|..+++|+||+|||||+||+++||+|.++ +...+.|... ..
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~--------------------------~~~~~~~~~~------------~~ 58 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR--------------------------AIWGADFVGG------------DP 58 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC--------------------------eeeeeecCCC------------CC
Confidence 778889999999999999999999999753 2223333321 12
Q ss_pred CCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhC-----Cce
Q 038881 238 PRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHD-----GVD 312 (794)
Q Consensus 238 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~-----g~d 312 (794)
..|..+|||||||||+++. .||||+|+|+.+|+++.. + ....+.++++++++++. +++
T Consensus 59 ~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~--~-~~~~~~~~~ai~~~~~~~~~~~~~~ 121 (255)
T cd04077 59 DSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCN--G-SGTLSGIIAGLEWVANDATKRGKPA 121 (255)
T ss_pred CCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCC--C-CcCHHHHHHHHHHHHhcccccCCCe
Confidence 5678899999999999864 699999999999999876 3 46788999999999987 489
Q ss_pred EEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCC-CcCCCCCceEEeccccCCCCccceEEecCCeEEee
Q 038881 313 VLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDS-TVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKG 391 (794)
Q Consensus 313 VIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~-~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g 391 (794)
|||||||... ...+..++.++.++|+++|+||||+|.... ..+...+++|+|||++.+
T Consensus 122 iin~S~g~~~----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~----------------- 180 (255)
T cd04077 122 VANMSLGGGA----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD----------------- 180 (255)
T ss_pred EEEeCCCCCC----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC-----------------
Confidence 9999999873 456777888899999999999999997663 444577999999986432
Q ss_pred eecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccC
Q 038881 392 QSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQ 471 (794)
Q Consensus 392 ~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~ 471 (794)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCc
Q 038881 472 ENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGV 551 (794)
Q Consensus 472 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~ 551 (794)
+.++.||++||.. ||+|||.
T Consensus 181 ----------------------------------------------------~~~~~~S~~g~~~--------~i~apG~ 200 (255)
T cd04077 181 ----------------------------------------------------DARASFSNYGSCV--------DIFAPGV 200 (255)
T ss_pred ----------------------------------------------------CCccCcccCCCCC--------cEEeCCC
Confidence 3568899999988 9999999
Q ss_pred eEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCcc
Q 038881 552 TIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASI 617 (794)
Q Consensus 552 ~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~ 617 (794)
+|.++.... .+.|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 201 ~i~~~~~~~-----------~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 201 DILSAWIGS-----------DTATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred CeEecccCC-----------CCcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 999887642 1478999999999999999999999999999999999999999974
No 20
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=3.3e-42 Score=363.84 Aligned_cols=242 Identities=29% Similarity=0.399 Sum_probs=204.0
Q ss_pred ccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCC
Q 038881 155 SNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSS 234 (794)
Q Consensus 155 ~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 234 (794)
...+|..+ +|+||+|+|||+||+++||+|... ++...+++.+.
T Consensus 18 ~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~-------------------------~~~~~~~~~~~----------- 60 (260)
T cd07484 18 APKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV-------------------------KFVLGYDFVDN----------- 60 (260)
T ss_pred hHHHHhhc-CCCCCEEEEEeCCCCCCCcccccC-------------------------CcccceeccCC-----------
Confidence 56899988 999999999999999999998432 23333344332
Q ss_pred CCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEE
Q 038881 235 FDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVL 314 (794)
Q Consensus 235 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVI 314 (794)
...+.|..+|||||||||++... ....+.|+||+|+|+.+|+++.. + .+...+++++|+++++.+++||
T Consensus 61 ~~~~~d~~~HGT~vagii~~~~~--------~~~~~~Giap~a~l~~~~v~~~~--~-~~~~~~~~~ai~~a~~~~~~ii 129 (260)
T cd07484 61 DSDAMDDNGHGTHVAGIIAAATN--------NGTGVAGVAPKAKIMPVKVLDAN--G-SGSLADIANGIRYAADKGAKVI 129 (260)
T ss_pred CCCCCCCCCcHHHHHHHHhCccC--------CCCceEeECCCCEEEEEEEECCC--C-CcCHHHHHHHHHHHHHCCCeEE
Confidence 22356788999999999998742 12335899999999999999876 3 4678899999999999999999
Q ss_pred EEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEeccccCCCCccceEEecCCeEEeeeec
Q 038881 315 SVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSL 394 (794)
Q Consensus 315 N~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~ 394 (794)
|||||... ....+..++..+.++|++||+||||+|.....++...+++|+||+.+.+
T Consensus 130 n~S~g~~~---~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~-------------------- 186 (260)
T cd07484 130 NLSLGGGL---GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD-------------------- 186 (260)
T ss_pred EecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC--------------------
Confidence 99999873 4456777778889999999999999998888888889999999985432
Q ss_pred CCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCC
Q 038881 395 SSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENG 474 (794)
Q Consensus 395 ~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~ 474 (794)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCceEE
Q 038881 475 NELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTII 554 (794)
Q Consensus 475 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~ 554 (794)
+.++.||++|+.. |++|||.+|+
T Consensus 187 -------------------------------------------------~~~~~~s~~g~~~--------~~~apG~~i~ 209 (260)
T cd07484 187 -------------------------------------------------DKRASFSNYGKWV--------DVSAPGGGIL 209 (260)
T ss_pred -------------------------------------------------CCcCCcCCCCCCc--------eEEeCCCCcE
Confidence 3567899999887 9999999999
Q ss_pred eeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccc
Q 038881 555 AAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQ 618 (794)
Q Consensus 555 Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~ 618 (794)
++.+. +.|..++|||||||+|||++||+++++| |++++||++|++||+++
T Consensus 210 ~~~~~-------------~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 210 STTPD-------------GDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred eecCC-------------CCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 88765 4789999999999999999999999999 99999999999999875
No 21
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.2e-42 Score=370.96 Aligned_cols=266 Identities=24% Similarity=0.221 Sum_probs=188.8
Q ss_pred EEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCCCCCCCCCCcce
Q 038881 169 IIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTHT 248 (794)
Q Consensus 169 ~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThV 248 (794)
+|||||||||.+||+|.+. +.....+... .....|..||||||
T Consensus 2 ~VaviDtGi~~~hp~l~~~--------------------------~~~~~~~~~~-----------~~~~~d~~gHGT~v 44 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPA--------------------------LAEDDLDSDE-----------PGWTADDLGHGTAV 44 (291)
T ss_pred EEEEecCCCCCCChhhhhh--------------------------hccccccccC-----------CCCcCCCCCChHHH
Confidence 7999999999999999753 1111111110 11156899999999
Q ss_pred eecccccccccccccccCCCcccccCCCceEEEEEeecCCC-CCCCCChHHHHHHHHHhHhCC---ceEEEEccCCCCCC
Q 038881 249 LSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPV-TGNECYDADILAAFDMAIHDG---VDVLSVSLGGGPSK 324 (794)
Q Consensus 249 AGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~-~G~~~~~~~i~~ai~~a~~~g---~dVIN~SlG~~~~~ 324 (794)
||||++.... .....|+||+|+|+.+|+++..+ ........++++||+|+++.+ ++|||||||.....
T Consensus 45 Agiia~~~~~--------~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~ 116 (291)
T cd04847 45 AGLALYGDLT--------LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPI 116 (291)
T ss_pred HHHHHcCccc--------CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCc
Confidence 9999975421 23458999999999999998762 011356788999999999853 59999999997422
Q ss_pred CC--CCHHHHHHHH-HHhCCcEEEEecCCCCCCCCCc------------CCCCCceEEeccccCCCCccceEEecCCeEE
Q 038881 325 FF--NDSTAIGSFH-AVKHGMVVICSAGNSGPTDSTV------------SNIAPWQITVGASTMDRDFPSYVVVSNNKRY 389 (794)
Q Consensus 325 ~~--~~~~~~a~~~-a~~~Gv~vV~AAGN~G~~~~~~------------~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~ 389 (794)
.. ...+..++.+ +.++|++||+||||++...... +..++++|+|||++.+.....+...
T Consensus 117 ~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s~~------ 190 (291)
T cd04847 117 DDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRARY------ 190 (291)
T ss_pred cCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcccc------
Confidence 11 1245555543 5689999999999999775432 2356799999998765321000000
Q ss_pred eeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEec
Q 038881 390 KGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLAN 469 (794)
Q Consensus 390 ~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n 469 (794)
T Consensus 191 -------------------------------------------------------------------------------- 190 (291)
T cd04847 191 -------------------------------------------------------------------------------- 190 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeC
Q 038881 470 AQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAP 549 (794)
Q Consensus 470 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~AP 549 (794)
+.......+.||+|||.. ++.+||||+||
T Consensus 191 -------------------------------------------------~~~~~~~~~~fs~~Gp~~--~~~~KPDl~ap 219 (291)
T cd04847 191 -------------------------------------------------SAVGPAPAGATTSSGPGS--PGPIKPDVVAF 219 (291)
T ss_pred -------------------------------------------------cccccccCCCccccCCCC--CCCcCCcEEee
Confidence 000011233499999998 99999999999
Q ss_pred CceEEeeecCCCCC-----CCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCc
Q 038881 550 GVTIIAAYTEAAGP-----TNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTAS 616 (794)
Q Consensus 550 G~~I~Sa~~~~~~~-----~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 616 (794)
|++|.+..+..... ...........|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 220 G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 220 GGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 99998765421100 00001122358999999999999999999999999999999999999999984
No 22
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.4e-42 Score=359.99 Aligned_cols=253 Identities=32% Similarity=0.402 Sum_probs=188.6
Q ss_pred ceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCCCCCCCCCCc
Q 038881 167 DTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGT 246 (794)
Q Consensus 167 GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT 246 (794)
||+|||||||||++||+|.+. +.....|..+. ........|..+|||
T Consensus 1 GV~VaviDsGv~~~hp~l~~~--------------------------~~~~~~~~~~~-------~~~~~~~~d~~~HGT 47 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR--------------------------VAQWADFDENR-------RISATEVFDAGGHGT 47 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc--------------------------cCCceeccCCC-------CCCCCCCCCCCCcHH
Confidence 799999999999999999753 11222222110 001234557889999
Q ss_pred ceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEEccCCCCCCCC
Q 038881 247 HTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGGGPSKFF 326 (794)
Q Consensus 247 hVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~ 326 (794)
||||||+++.. ++...||||+|+|+.+|++... + +...+++++|+++++.+++|||||||.....
T Consensus 48 ~vAgiia~~~~---------~~~~~GvAp~a~i~~~~v~~~~--~--~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~-- 112 (254)
T cd07490 48 HVSGTIGGGGA---------KGVYIGVAPEADLLHGKVLDDG--G--GSLSQIIAGMEWAVEKDADVVSMSLGGTYYS-- 112 (254)
T ss_pred HHHHHHhcCCC---------CCCEEEECCCCEEEEEEEecCC--C--CcHHHHHHHHHHHHhCCCCEEEECCCcCCCC--
Confidence 99999999852 3345799999999999999876 3 7889999999999999999999999987432
Q ss_pred CCHHHHHHHHHHh-CCcEEEEecCCCCCCCCCcCCCCCceEEeccccCCCCccceEEecCCeEEeeeecCCCCCCCCcee
Q 038881 327 NDSTAIGSFHAVK-HGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLF 405 (794)
Q Consensus 327 ~~~~~~a~~~a~~-~Gv~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 405 (794)
.+.+..++....+ +|++||+||||+|......+...+++|+|||++.+.....+...
T Consensus 113 ~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~---------------------- 170 (254)
T cd07490 113 EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSSF---------------------- 170 (254)
T ss_pred CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccCC----------------------
Confidence 5566666555554 69999999999998866666788999999997653210000000
Q ss_pred ceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCccccCCCCccc
Q 038881 406 PLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELLADPHLLP 485 (794)
Q Consensus 406 plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p 485 (794)
T Consensus 171 -------------------------------------------------------------------------------- 170 (254)
T cd07490 171 -------------------------------------------------------------------------------- 170 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCceEEeeecCCCCCCC
Q 038881 486 ASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTN 565 (794)
Q Consensus 486 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~ 565 (794)
.......++.+|.. .....|||++|||.+|+++....
T Consensus 171 -------------------------------------g~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~~----- 207 (254)
T cd07490 171 -------------------------------------GSSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQGA----- 207 (254)
T ss_pred -------------------------------------cccccccccCCCCC-ccCCcCceEEeccCCeEccccCC-----
Confidence 00122223334433 25668999999999999865321
Q ss_pred CCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCc
Q 038881 566 EDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTAS 616 (794)
Q Consensus 566 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 616 (794)
...+.|..++|||||||+|||++|||+|++|+|++.+||++|++||+
T Consensus 208 ----~~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 208 ----NGDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred ----CCCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 11257899999999999999999999999999999999999999984
No 23
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.3e-41 Score=363.82 Aligned_cols=249 Identities=24% Similarity=0.294 Sum_probs=183.2
Q ss_pred ccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCC
Q 038881 155 SNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSS 234 (794)
Q Consensus 155 ~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 234 (794)
+..+|+++++|+||+||||||||+..|| |..+++. + ...+..+ .
T Consensus 10 ~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~------------------~~~~~~~----------~ 53 (298)
T cd07494 10 ATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------V------------------RVVLAPG----------A 53 (298)
T ss_pred hhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------c------------------eeecCCC----------C
Confidence 5689999999999999999999999998 7643210 0 0001100 0
Q ss_pred CCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEE
Q 038881 235 FDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVL 314 (794)
Q Consensus 235 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVI 314 (794)
.....|++||||||||++ .||||+|+|+.+|+++. ....+++||+||++++++||
T Consensus 54 ~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~-------~~~~~~~ai~~a~~~g~dVI 108 (298)
T cd07494 54 TDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP-------DLVNSVGAFKKAISLSPDII 108 (298)
T ss_pred CCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC-------CcHHHHHHHHHHHhcCCCEE
Confidence 124567889999999875 47899999999999753 45678999999999999999
Q ss_pred EEccCCCCCCC----------CCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEeccccCCCCccceEEec
Q 038881 315 SVSLGGGPSKF----------FNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFPSYVVVS 384 (794)
Q Consensus 315 N~SlG~~~~~~----------~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~ 384 (794)
|||||...... ....+..++.+|.++|++||+||||++. .++...|++|+|||++.+..-
T Consensus 109 n~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~g------- 178 (298)
T cd07494 109 SNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDEDG------- 178 (298)
T ss_pred EeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCCC-------
Confidence 99999863111 1234777888899999999999999974 457788999999997543200
Q ss_pred CCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceE
Q 038881 385 NNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVG 464 (794)
Q Consensus 385 ~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g 464 (794)
T Consensus 179 -------------------------------------------------------------------------------- 178 (298)
T cd07494 179 -------------------------------------------------------------------------------- 178 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCcccccc--CCCCCCCCCCcc
Q 038881 465 MVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFS--SKGPSSVAPEIL 542 (794)
Q Consensus 465 vi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fS--S~Gp~~~~~~~~ 542 (794)
.....++ ++... ..+++.
T Consensus 179 -----------------------------------------------------------~~~~~~~~~~~~s~-~~~g~~ 198 (298)
T cd07494 179 -----------------------------------------------------------ARRASSYASGFRSK-IYPGRQ 198 (298)
T ss_pred -----------------------------------------------------------cccccccccCcccc-cCCCCc
Confidence 0000111 11111 125677
Q ss_pred cCce----------------EeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHH
Q 038881 543 KPDI----------------TAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAA 606 (794)
Q Consensus 543 KPDI----------------~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ 606 (794)
|||+ +|||..|.++...... .....+.|..++|||||||||||++|||+|++|.|++++
T Consensus 199 ~pd~~~~~g~~~~~~~~~~~~APG~~i~~~~~~~~~-----~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~ 273 (298)
T cd07494 199 VPDVCGLVGMLPHAAYLMLPVPPGSQLDRSCAAFPD-----GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPER 273 (298)
T ss_pred cCccccccCcCCcccccccccCCCcceeccccCCCC-----CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 7777 4799998765532110 011225799999999999999999999999999999999
Q ss_pred HHHHHHhcCcccc
Q 038881 607 IKSAIMTTASIQD 619 (794)
Q Consensus 607 ik~~L~~TA~~~~ 619 (794)
||.+|++||+++.
T Consensus 274 v~~~l~~ta~~~~ 286 (298)
T cd07494 274 ARSLLNKTARDVT 286 (298)
T ss_pred HHHHHHHhCcccC
Confidence 9999999999874
No 24
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=1.6e-41 Score=365.09 Aligned_cols=279 Identities=28% Similarity=0.314 Sum_probs=200.4
Q ss_pred ccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCCCCC
Q 038881 161 KARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRD 240 (794)
Q Consensus 161 ~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~d 240 (794)
++++|+||+|||||||||++||+|.+.... ......+++.....+.+ ...|
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~---------------~~~~~~~~~~~~~~~~~--------------~~~d 52 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFN---------------KTNLFHRKIVRYDSLSD--------------TKDD 52 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcC---------------cCccCcccEEEeeccCC--------------CCCC
Confidence 578999999999999999999999764210 00111223322222211 2227
Q ss_pred CCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEEccCC
Q 038881 241 KDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGG 320 (794)
Q Consensus 241 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~SlG~ 320 (794)
..+|||||||||+|....... ...+.||||+|+|+.+|+++... .......+..+++++.+.+++|||||||.
T Consensus 53 ~~~HGT~vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Vin~S~G~ 125 (293)
T cd04842 53 VDGHGTHVAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSG--NLSSPPDLNKLFSPMYDAGARISSNSWGS 125 (293)
T ss_pred CCCCcchhheeeccCCcCCCc-----ccccccccccCeEEEEEeeccCc--cccCCccHHHHHHHHHHhCCEEEeccCCC
Confidence 899999999999998632211 11469999999999999988762 13567789999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHH-h-CCcEEEEecCCCCCCCC---CcCCCCCceEEeccccCCCCccceEEecCCeEEeeeecC
Q 038881 321 GPSKFFNDSTAIGSFHAV-K-HGMVVICSAGNSGPTDS---TVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLS 395 (794)
Q Consensus 321 ~~~~~~~~~~~~a~~~a~-~-~Gv~vV~AAGN~G~~~~---~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~ 395 (794)
.... .......++.++. + +|++||+||||++.... ..+...+++|+|||++.......
T Consensus 126 ~~~~-~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~---------------- 188 (293)
T cd04842 126 PVNN-GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG---------------- 188 (293)
T ss_pred CCcc-ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc----------------
Confidence 8432 1233344444433 3 79999999999997765 45567899999999765431000
Q ss_pred CCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCc
Q 038881 396 SKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGN 475 (794)
Q Consensus 396 ~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~ 475 (794)
..|..
T Consensus 189 ----------------------------~~~~~----------------------------------------------- 193 (293)
T cd04842 189 ----------------------------EGGLG----------------------------------------------- 193 (293)
T ss_pred ----------------------------ccccc-----------------------------------------------
Confidence 00000
Q ss_pred cccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCceEEe
Q 038881 476 ELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIA 555 (794)
Q Consensus 476 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~S 555 (794)
.......++.||++||+. ++++||||+|||++|++
T Consensus 194 -------------------------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~ 228 (293)
T cd04842 194 -------------------------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILS 228 (293)
T ss_pred -------------------------------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEe
Confidence 001135789999999988 89999999999999999
Q ss_pred eecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhC-----C---CCCHHHHHHHHHhcCc
Q 038881 556 AYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLH-----P---EWSPAAIKSAIMTTAS 616 (794)
Q Consensus 556 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----p---~lsp~~ik~~L~~TA~ 616 (794)
+.+.... ........|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 229 ~~~~~~~----~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 229 ARSGGGG----IGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred ccCCCCC----CCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 8754200 011123578899999999999999999999985 4 6677899999999985
No 25
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.1e-41 Score=362.33 Aligned_cols=207 Identities=26% Similarity=0.362 Sum_probs=167.7
Q ss_pred CCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhH---------
Q 038881 237 TPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAI--------- 307 (794)
Q Consensus 237 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~--------- 307 (794)
...+..+|||||||||+|... ++..+.||||+|+|+.+|+++.. + ...+++++|++|++
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~--------~~~~~~GvAp~a~i~~~~v~~~~--~--~~~~~i~~a~~~a~~~~~~~~~~ 133 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTN--------NGVGVAGVAWGARILPVRVLGKC--G--GTLSDIVDGMRWAAGLPVPGVPV 133 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCC--------CCCCceeecCCCeEEEEEEecCC--C--CcHHHHHHHHHHHhccCcCCCcc
Confidence 345678999999999999852 12335899999999999999876 4 57889999999998
Q ss_pred -hCCceEEEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCC-CCcCCCCCceEEeccccCCCCccceEEecC
Q 038881 308 -HDGVDVLSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTD-STVSNIAPWQITVGASTMDRDFPSYVVVSN 385 (794)
Q Consensus 308 -~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~-~~~~~~ap~vitVgAs~~~~~~~~~~~~~~ 385 (794)
.++++|||||||.... ....+..++..+.++|++||+||||++... ...+...+++|+|||++.+
T Consensus 134 ~~~~~~Iin~S~G~~~~--~~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~----------- 200 (285)
T cd07496 134 NPNPAKVINLSLGGDGA--CSATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR----------- 200 (285)
T ss_pred cCCCCeEEEeCCCCCCC--CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC-----------
Confidence 4578999999998732 145677888899999999999999999776 4555678899999986432
Q ss_pred CeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEE
Q 038881 386 NKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGM 465 (794)
Q Consensus 386 ~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gv 465 (794)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCc
Q 038881 466 VLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPD 545 (794)
Q Consensus 466 i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPD 545 (794)
+.++.||++|+.+ |
T Consensus 201 ----------------------------------------------------------~~~~~~S~~g~~v--------d 214 (285)
T cd07496 201 ----------------------------------------------------------GQRASYSNYGPAV--------D 214 (285)
T ss_pred ----------------------------------------------------------CCcccccCCCCCC--------C
Confidence 3678899999988 9
Q ss_pred eEeCCceEEeeecCCCCCC--CCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 038881 546 ITAPGVTIIAAYTEAAGPT--NEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTT 614 (794)
Q Consensus 546 I~APG~~I~Sa~~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~T 614 (794)
|.|||++|.++........ ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 215 i~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 215 VSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred EEeCCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 9999999998876532110 00111223578899999999999999999999999999999999999986
No 26
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.8e-41 Score=354.69 Aligned_cols=249 Identities=20% Similarity=0.236 Sum_probs=177.7
Q ss_pred ccccccccC-CCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCC
Q 038881 155 SNSIWKKAR-YGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNS 233 (794)
Q Consensus 155 ~~~~~~~g~-~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 233 (794)
+..+|+... .|+||+|+|||+|||.+||+|.++.. . +..+
T Consensus 4 ~~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~--------------------------~---~~~~---------- 44 (277)
T cd04843 4 ARYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGI--------------------------T---LISG---------- 44 (277)
T ss_pred hHHHHHhcCCCCCcEEEEEecCCCCCCChhhccccc--------------------------c---ccCC----------
Confidence 568998854 59999999999999999999975411 0 0000
Q ss_pred CCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceE
Q 038881 234 SFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDV 313 (794)
Q Consensus 234 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dV 313 (794)
....|+++|||||||||+|.. +.+| +.||||+|+|+.+|+++ . ....+.|..|++++...++.+
T Consensus 45 --~~~~d~~gHGT~VAGiIaa~~----n~~G-----~~GvAp~a~l~~i~v~~-~----~~~~~ai~~A~~~~~~~~v~~ 108 (277)
T cd04843 45 --LTDQADSDHGTAVLGIIVAKD----NGIG-----VTGIAHGAQAAVVSSTR-V----SNTADAILDAADYLSPGDVIL 108 (277)
T ss_pred --CCCCCCCCCcchhheeeeeec----CCCc-----eeeeccCCEEEEEEecC-C----CCHHHHHHHHHhccCCCCEEE
Confidence 124578899999999999863 1122 48999999999999975 1 123333444444432346778
Q ss_pred EEEccCCCCCCC------CCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCc-----------C--CCCCceEEeccccCC
Q 038881 314 LSVSLGGGPSKF------FNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTV-----------S--NIAPWQITVGASTMD 374 (794)
Q Consensus 314 IN~SlG~~~~~~------~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~-----------~--~~ap~vitVgAs~~~ 374 (794)
||||||...... ....+..++.++.++|+++|+||||++...... . ...|++|+|||++.+
T Consensus 109 in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~ 188 (277)
T cd04843 109 LEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSST 188 (277)
T ss_pred EEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCC
Confidence 999999873211 223455677788899999999999998652111 1 123578888875432
Q ss_pred CCccceEEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHH
Q 038881 375 RDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKG 454 (794)
Q Consensus 375 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~ 454 (794)
.
T Consensus 189 ~------------------------------------------------------------------------------- 189 (277)
T cd04843 189 T------------------------------------------------------------------------------- 189 (277)
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred HHHHHcCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCC
Q 038881 455 QQALLAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGP 534 (794)
Q Consensus 455 ~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp 534 (794)
...++.||+||+
T Consensus 190 --------------------------------------------------------------------~~~~~~fSn~G~ 201 (277)
T cd04843 190 --------------------------------------------------------------------GHTRLAFSNYGS 201 (277)
T ss_pred --------------------------------------------------------------------CCccccccCCCC
Confidence 013789999999
Q ss_pred CCCCCCcccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHh----h-CCCCCHHHHHH
Q 038881 535 SSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKT----L-HPEWSPAAIKS 609 (794)
Q Consensus 535 ~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~p~lsp~~ik~ 609 (794)
.. ||.|||++|+++.+..... ......+.|..++|||||||||||++|||++ + +|+|+|+|||+
T Consensus 202 ~v--------di~APG~~i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~ 270 (277)
T cd04843 202 RV--------DVYGWGENVTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRE 270 (277)
T ss_pred cc--------ceEcCCCCeEecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Confidence 87 9999999999998753211 0011123457899999999999999999975 3 49999999999
Q ss_pred HHHhcCc
Q 038881 610 AIMTTAS 616 (794)
Q Consensus 610 ~L~~TA~ 616 (794)
+|++|+.
T Consensus 271 ~L~~t~~ 277 (277)
T cd04843 271 LLTATGT 277 (277)
T ss_pred HHHhcCC
Confidence 9999973
No 27
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.6e-41 Score=351.30 Aligned_cols=240 Identities=28% Similarity=0.372 Sum_probs=190.2
Q ss_pred eEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCCCCCCCCCCcc
Q 038881 168 TIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTH 247 (794)
Q Consensus 168 V~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~d~~gHGTh 247 (794)
|+|||||+|||++||+|.+. .++...+.+... .....|..+||||
T Consensus 1 V~VaviDsGi~~~hp~l~~~------------------------~~~~~~~~~~~~-----------~~~~~~~~~HGT~ 45 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGK------------------------PKLVPGWNFVSN-----------NDPTSDIDGHGTA 45 (242)
T ss_pred CEEEEecCCCCCCChhhccC------------------------cCccCCccccCC-----------CCCCCCCCCCHHH
Confidence 68999999999999999753 011111222211 1245678999999
Q ss_pred eeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEEccCCCCC-CCC
Q 038881 248 TLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGGGPS-KFF 326 (794)
Q Consensus 248 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~-~~~ 326 (794)
|||||+|+.. ....+.||||+|+|+.+|+++.. + .+...++.++++++++.+++|||||||.... ...
T Consensus 46 vAgiiag~~~--------~~~~~~Gvap~a~i~~~~~~~~~--~-~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~ 114 (242)
T cd07498 46 CAGVAAAVGN--------NGLGVAGVAPGAKLMPVRIADSL--G-YAYWSDIAQAITWAADNGADVISNSWGGSDSTESI 114 (242)
T ss_pred HHHHHHhccC--------CCceeEeECCCCEEEEEEEECCC--C-CccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchH
Confidence 9999998752 12345899999999999999876 3 4688999999999999999999999998732 233
Q ss_pred CCHHHHHHHHHHh-CCcEEEEecCCCCCCCCCcCCCCCceEEeccccCCCCccceEEecCCeEEeeeecCCCCCCCCcee
Q 038881 327 NDSTAIGSFHAVK-HGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLF 405 (794)
Q Consensus 327 ~~~~~~a~~~a~~-~Gv~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 405 (794)
...+..++..+.+ +|++||+||||+|......+...+++|+|||++..
T Consensus 115 ~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------------------------------- 163 (242)
T cd07498 115 SSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN------------------------------- 163 (242)
T ss_pred HHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC-------------------------------
Confidence 4567777777888 99999999999998877667788999999986432
Q ss_pred ceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCccccCCCCccc
Q 038881 406 PLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELLADPHLLP 485 (794)
Q Consensus 406 plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p 485 (794)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCceEEeeecCCCCCCC
Q 038881 486 ASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTN 565 (794)
Q Consensus 486 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~ 565 (794)
+.+++||++||.. |++|||.++.+.......
T Consensus 164 --------------------------------------~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~--- 194 (242)
T cd07498 164 --------------------------------------DARASYSNYGNYV--------DLVAPGVGIWTTGTGRGS--- 194 (242)
T ss_pred --------------------------------------CCccCcCCCCCCe--------EEEeCcCCcccCCccccc---
Confidence 3568899999988 999999999887544211
Q ss_pred CCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 038881 566 EDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTT 614 (794)
Q Consensus 566 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~T 614 (794)
......+.|..++|||||||+|||++|||+|++|+|+++|||++|++|
T Consensus 195 -~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 195 -AGDYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred -cccCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 111223578899999999999999999999999999999999999976
No 28
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.1e-41 Score=360.55 Aligned_cols=265 Identities=25% Similarity=0.307 Sum_probs=184.7
Q ss_pred cccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCCCC
Q 038881 160 KKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPR 239 (794)
Q Consensus 160 ~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~ 239 (794)
..+++|+||+|||||+|||++||+|.+. .+...+|.+. ....
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~--------------------------~~~~~~~~~~------------~~~~ 43 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGR--------------------------DITTKSFVGG------------EDVQ 43 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCC--------------------------cccCcccCCC------------CCCC
Confidence 3578999999999999999999999754 1112233321 1356
Q ss_pred CCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEEccC
Q 038881 240 DKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLG 319 (794)
Q Consensus 240 d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~SlG 319 (794)
|..||||||||||+|+.. ++...||||+|+|+.+|++.... .+....+++||+|+++.+++|||||||
T Consensus 44 d~~gHGT~VAgiiag~~~---------~~~~~GvAp~a~i~~~~~~~~~~---~~~~~~i~~ai~~a~~~g~~Vin~S~G 111 (297)
T cd07480 44 DGHGHGTHCAGTIFGRDV---------PGPRYGVARGAEIALIGKVLGDG---GGGDGGILAGIQWAVANGADVISMSLG 111 (297)
T ss_pred CCCCcHHHHHHHHhcccC---------CCcccccCCCCEEEEEEEEeCCC---CCcHHHHHHHHHHHHHcCCCEEEeccC
Confidence 789999999999999752 23347999999999999987663 366777999999999999999999999
Q ss_pred CCCCCC----------CCCHHHHHHHHH---------------HhCCcEEEEecCCCCCCCCCcCC-----CCCceEEec
Q 038881 320 GGPSKF----------FNDSTAIGSFHA---------------VKHGMVVICSAGNSGPTDSTVSN-----IAPWQITVG 369 (794)
Q Consensus 320 ~~~~~~----------~~~~~~~a~~~a---------------~~~Gv~vV~AAGN~G~~~~~~~~-----~ap~vitVg 369 (794)
...... ....+......+ .++|++||+||||++........ ..+++++|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~ 191 (297)
T cd07480 112 ADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVA 191 (297)
T ss_pred CCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEE
Confidence 863111 111222222233 68999999999999865432221 122333333
Q ss_pred cccCCCCccceEEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCch
Q 038881 370 ASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNA 449 (794)
Q Consensus 370 As~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~ 449 (794)
+....
T Consensus 192 ~V~~~--------------------------------------------------------------------------- 196 (297)
T cd07480 192 AVGAL--------------------------------------------------------------------------- 196 (297)
T ss_pred EECCC---------------------------------------------------------------------------
Confidence 32211
Q ss_pred hhhHHHHHHHcCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccc
Q 038881 450 RIDKGQQALLAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAF 529 (794)
Q Consensus 450 ~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~f 529 (794)
+....|
T Consensus 197 --------------------------------------------------------------------------~~~~~~ 202 (297)
T cd07480 197 --------------------------------------------------------------------------GRTGNF 202 (297)
T ss_pred --------------------------------------------------------------------------CCCCCc
Confidence 111222
Q ss_pred cCCCCCCCCCCcccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHH
Q 038881 530 SSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKS 609 (794)
Q Consensus 530 SS~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~ 609 (794)
+++.+ ....||||+|||.+|+++.+. +.|..++|||||||+|||++|||+|++|.+++.+++.
T Consensus 203 ~~~~~----~~~~~~dv~ApG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~ 265 (297)
T cd07480 203 SAVAN----FSNGEVDIAAPGVDIVSAAPG-------------GGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAA 265 (297)
T ss_pred cccCC----CCCCceEEEeCCCCeEeecCC-------------CcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHH
Confidence 22222 223577999999999998876 4899999999999999999999999999999988888
Q ss_pred HHHhcCccccCCCcccccCCCCCCCCCcccccccccc
Q 038881 610 AIMTTASIQDNNKGQILNASSYKATPFSYGAGHIQPN 646 (794)
Q Consensus 610 ~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~ 646 (794)
+|+.......... .........+|+|++++.
T Consensus 266 ~l~~~l~~~~~~~------~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 266 LLQARLTAARTTQ------FAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred HHHHHHhhcccCC------CCCCCChhhcCCceeecC
Confidence 8874322210000 011335668999998875
No 29
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-40 Score=351.26 Aligned_cols=367 Identities=23% Similarity=0.339 Sum_probs=279.9
Q ss_pred hccccccCCccEEEEeCCCCCCCCccccccccchHHHHHHHHHhcCCCCCCCc------ceEEEecceeeeEEEEeCH--
Q 038881 42 LSFLFSMLQTHHCCQKGAHSHGPELSAVDLHRVTESHYEFLGSFLHGNDNPED------AIFYSYTRHINGFAAKLDD-- 113 (794)
Q Consensus 42 ~~~~~~~~~~~YIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~y~~~~ng~s~~~~~-- 113 (794)
.++..++++.+|||.|+..... ..|+..+++.+....-..- .....|...|.-+-++-..
T Consensus 41 ~~f~~tvve~EyIv~F~~y~~A------------k~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~ 108 (1033)
T KOG4266|consen 41 NPFNVTVVESEYIVRFKQYKPA------------KDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKE 108 (1033)
T ss_pred CccceeeecceeEEEecccccc------------hHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCcc
Confidence 4556678999999999998654 5677778777764332222 2234555566666555432
Q ss_pred ---HHHHHHHcCCCeEEEEecceeccccc------------CCcccc-cc---------------ccC---------CCc
Q 038881 114 ---AVAAEIAKHPKVVSVFLNQGRKLHTT------------HSWEFL-GL---------------ERN---------GRV 153 (794)
Q Consensus 114 ---~~i~~L~~~p~V~~v~~~~~~~~~~~------------~s~~~~-gl---------------~~~---------~~~ 153 (794)
-+|+.|..+|.|+.|.|.+.+..-.. ..-.++ |. ++. +..
T Consensus 109 ~~~~~ierLe~hp~vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l 188 (1033)
T KOG4266|consen 109 AVVGEIERLEMHPDVKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSML 188 (1033)
T ss_pred chhheeeehhcCCCceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHh
Confidence 35899999999999999876632100 000000 00 000 011
Q ss_pred cccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCC
Q 038881 154 ESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNS 233 (794)
Q Consensus 154 ~~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 233 (794)
.++.+|+.|++|++|+|||.|||+.-+||.|+. +..-.++++.
T Consensus 189 ~Ad~LWk~GyTGa~VkvAiFDTGl~~~HPHFrn---------------------------vKERTNWTNE---------- 231 (1033)
T KOG4266|consen 189 GADHLWKKGYTGAKVKVAIFDTGLRADHPHFRN---------------------------VKERTNWTNE---------- 231 (1033)
T ss_pred chhhHHhccccCCceEEEEeecccccCCccccc---------------------------hhhhcCCcCc----------
Confidence 468899999999999999999999999999963 1111122221
Q ss_pred CCCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceE
Q 038881 234 SFDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDV 313 (794)
Q Consensus 234 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dV 313 (794)
..-.|..||||.|||+|||.. ...|.||+++|+++|||.+.. -...+.+++|++||+..+.||
T Consensus 232 --~tLdD~lgHGTFVAGvia~~~------------ec~gfa~d~e~~~frvft~~q---VSYTSWFLDAFNYAI~~kidv 294 (1033)
T KOG4266|consen 232 --DTLDDNLGHGTFVAGVIAGRN------------ECLGFASDTEIYAFRVFTDAQ---VSYTSWFLDAFNYAIATKIDV 294 (1033)
T ss_pred --cccccCcccceeEeeeeccch------------hhcccCCccceeEEEeeccce---eehhhHHHHHHHHHHhhhcce
Confidence 245578999999999999873 347899999999999998763 367899999999999999999
Q ss_pred EEEccCCCCCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCC--ceEEeccccCCCCccceEEecCCeEEee
Q 038881 314 LSVSLGGGPSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAP--WQITVGASTMDRDFPSYVVVSNNKRYKG 391 (794)
Q Consensus 314 IN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ap--~vitVgAs~~~~~~~~~~~~~~~~~~~g 391 (794)
+|+|+|++ ++++.|+-.-+......+|++|-|+||+||-.++..+++. .||.||..+.
T Consensus 295 LNLSIGGP--DfmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGIdf------------------ 354 (1033)
T KOG4266|consen 295 LNLSIGGP--DFMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDF------------------ 354 (1033)
T ss_pred EeeccCCc--ccccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeeccccc------------------
Confidence 99999998 5788888888888999999999999999999998887653 5666664221
Q ss_pred eecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccC
Q 038881 392 QSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQ 471 (794)
Q Consensus 392 ~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~ 471 (794)
T Consensus 355 -------------------------------------------------------------------------------- 354 (1033)
T KOG4266|consen 355 -------------------------------------------------------------------------------- 354 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCC----CCCcccCceE
Q 038881 472 ENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSV----APEILKPDIT 547 (794)
Q Consensus 472 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~----~~~~~KPDI~ 547 (794)
.+.+|.|||||-+.+ ..||+||||+
T Consensus 355 ---------------------------------------------------dD~IA~FSSRGMtTWELP~GYGRmkpDiV 383 (1033)
T KOG4266|consen 355 ---------------------------------------------------DDHIASFSSRGMTTWELPHGYGRMKPDIV 383 (1033)
T ss_pred ---------------------------------------------------cchhhhhccCCcceeecCCcccccCCceE
Confidence 368999999997653 5799999999
Q ss_pred eCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHh----hCCCCCHHHHHHHHHhcCccccCCCc
Q 038881 548 APGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKT----LHPEWSPAAIKSAIMTTASIQDNNKG 623 (794)
Q Consensus 548 APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~lsp~~ik~~L~~TA~~~~~~g~ 623 (794)
+-|.+|...-.. .+...+||||.|+|.|||+++||.+ +.--+.|+.+|++|+..|.+++..
T Consensus 384 tYG~~v~GS~v~-------------~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~-- 448 (1033)
T KOG4266|consen 384 TYGRDVMGSKVS-------------TGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP-- 448 (1033)
T ss_pred eeccccccCccc-------------ccchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCC--
Confidence 999998865443 3778999999999999999999976 234468999999999999998543
Q ss_pred ccccCCCCCCCCCcccccccccccccC
Q 038881 624 QILNASSYKATPFSYGAGHIQPNLAMD 650 (794)
Q Consensus 624 ~~~~~~~~~~~~~~~G~G~vn~~~Al~ 650 (794)
.-++||+|++|+.++.+
T Consensus 449 ----------NMfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 449 ----------NMFEQGAGKLDLLESYQ 465 (1033)
T ss_pred ----------chhhccCcchhHHHHHH
Confidence 24789999999999886
No 30
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=2.2e-40 Score=343.32 Aligned_cols=227 Identities=32% Similarity=0.471 Sum_probs=188.4
Q ss_pred ceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCCCCCCCCCCc
Q 038881 167 DTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGT 246 (794)
Q Consensus 167 GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT 246 (794)
||+|||||+||+++||+|.+. +...++|... ......|..+|||
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~--------------------------~~~~~~~~~~----------~~~~~~~~~~HGT 44 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN--------------------------IVGGANFTGD----------DNNDYQDGNGHGT 44 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc--------------------------ccCcccccCC----------CCCCCCCCCCCHH
Confidence 799999999999999999753 2222333321 0124567889999
Q ss_pred ceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEEccCCCCCCCC
Q 038881 247 HTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGGGPSKFF 326 (794)
Q Consensus 247 hVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~ 326 (794)
||||||++... ...+.|+||+|+|+.+|+++.. + .+...+++++++++++.+++|||||||... .
T Consensus 45 ~vA~ii~~~~~---------~~~~~giap~a~i~~~~~~~~~--~-~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~---~ 109 (229)
T cd07477 45 HVAGIIAALDN---------GVGVVGVAPEADLYAVKVLNDD--G-SGTYSDIIAGIEWAIENGMDIINMSLGGPS---D 109 (229)
T ss_pred HHHHHHhcccC---------CCccEeeCCCCEEEEEEEECCC--C-CcCHHHHHHHHHHHHHCCCCEEEECCccCC---C
Confidence 99999999752 2245899999999999999876 3 456789999999999999999999999862 3
Q ss_pred CCHHHHHHHHHHhCCcEEEEecCCCCCCCCCc--CCCCCceEEeccccCCCCccceEEecCCeEEeeeecCCCCCCCCce
Q 038881 327 NDSTAIGSFHAVKHGMVVICSAGNSGPTDSTV--SNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKL 404 (794)
Q Consensus 327 ~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~--~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 404 (794)
...+..++..+.++|+++|+||||++...... +...+++|+||+++.+
T Consensus 110 ~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~------------------------------ 159 (229)
T cd07477 110 SPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN------------------------------ 159 (229)
T ss_pred CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC------------------------------
Confidence 44566777788999999999999999776664 6678999999986532
Q ss_pred eceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCccccCCCCcc
Q 038881 405 FPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELLADPHLL 484 (794)
Q Consensus 405 ~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~ 484 (794)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCceEEeeecCCCCCC
Q 038881 485 PASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPT 564 (794)
Q Consensus 485 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~ 564 (794)
+.++.||++|+.. |+.|||.+|+++++.
T Consensus 160 ---------------------------------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~----- 187 (229)
T cd07477 160 ---------------------------------------NNRASFSSTGPEV--------ELAAPGVDILSTYPN----- 187 (229)
T ss_pred ---------------------------------------CCcCCccCCCCCc--------eEEeCCCCeEEecCC-----
Confidence 3566899999977 999999999998876
Q ss_pred CCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 038881 565 NEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTT 614 (794)
Q Consensus 565 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~T 614 (794)
+.|..++|||||||+|||++|||+|++|++++.+||++|++|
T Consensus 188 --------~~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 188 --------NDYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred --------CCEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 378899999999999999999999999999999999999986
No 31
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.8e-40 Score=346.63 Aligned_cols=249 Identities=28% Similarity=0.399 Sum_probs=190.5
Q ss_pred CceEEEEecCCCCCCCCCCcCCCCCCCCCcccc---ccccCCCccccccccccceeeccccc-ccccCCCCCCCCCCCCC
Q 038881 166 EDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKG---ICENDKDAKFLCNRKLIGARYFNKGY-AAAVGPLNSSFDTPRDK 241 (794)
Q Consensus 166 ~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g---~~~~g~~~~~~~n~ki~g~~~~~~~~-~~~~~~~~~~~~~~~d~ 241 (794)
+||+|||||||||++||+|.++ .|.. .+..+.+ .. ...|.+.. .. .......++.|.
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~-------~~~~~~~~~~~~~~--~~-------~~~~~~~~~~~---~~~~~~~~~~d~ 62 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIPGNGID--DD-------GNGYVDDIYGW---NFVNNDNDPMDD 62 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc-------cccCcccccccCcc--cC-------CCCcccCCCcc---cccCCCCCCCCC
Confidence 6899999999999999999864 2221 1111111 00 00111110 00 000113456788
Q ss_pred CCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEEccCCC
Q 038881 242 DGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGGG 321 (794)
Q Consensus 242 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~ 321 (794)
.+|||||||||+|... ....+.||||+|+|+.+|++... + .++..+++++|+++++.+++|||+|||..
T Consensus 63 ~~HGT~va~ii~~~~~--------~~~~~~GvAp~a~l~~~~~~~~~--~-~~~~~~~~~a~~~a~~~~~~vin~S~G~~ 131 (259)
T cd07473 63 NGHGTHVAGIIGAVGN--------NGIGIAGVAWNVKIMPLKFLGAD--G-SGTTSDAIKAIDYAVDMGAKIINNSWGGG 131 (259)
T ss_pred CCcHHHHHHHHHCcCC--------CCCceEEeCCCCEEEEEEEeCCC--C-CcCHHHHHHHHHHHHHCCCeEEEeCCCCC
Confidence 9999999999998752 22335899999999999999876 3 47889999999999999999999999987
Q ss_pred CCCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCC---CCcCC--CCCceEEeccccCCCCccceEEecCCeEEeeeecCC
Q 038881 322 PSKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTD---STVSN--IAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSS 396 (794)
Q Consensus 322 ~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~---~~~~~--~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~ 396 (794)
. ....+..++.++.++|++||+||||+|... ..++. ..+++|+||+.+.+
T Consensus 132 ~---~~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~---------------------- 186 (259)
T cd07473 132 G---PSQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN---------------------- 186 (259)
T ss_pred C---CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC----------------------
Confidence 3 256777888889999999999999998762 23333 35789999985432
Q ss_pred CCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCcc
Q 038881 397 KGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNE 476 (794)
Q Consensus 397 ~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~ 476 (794)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCceEEee
Q 038881 477 LLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAA 556 (794)
Q Consensus 477 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~Sa 556 (794)
+.++.||++||. +||+.|||.++++.
T Consensus 187 -----------------------------------------------~~~~~~s~~g~~-------~~~~~apG~~~~~~ 212 (259)
T cd07473 187 -----------------------------------------------DALASFSNYGKK-------TVDLAAPGVDILST 212 (259)
T ss_pred -----------------------------------------------CCcCcccCCCCC-------CcEEEeccCCeEec
Confidence 356679999985 35999999999996
Q ss_pred ecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCc
Q 038881 557 YTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTAS 616 (794)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 616 (794)
.+. +.|..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 213 ~~~-------------~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 213 SPG-------------GGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred cCC-------------CcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 654 47899999999999999999999999999999999999999984
No 32
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4e-40 Score=342.79 Aligned_cols=161 Identities=20% Similarity=0.202 Sum_probs=120.5
Q ss_pred CCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCCCCCCCCC
Q 038881 165 GEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGH 244 (794)
Q Consensus 165 G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~d~~gH 244 (794)
+++|+|||||||||++||+|.++ ++..+.|.... +..+.......|..||
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~--------------------------i~~~~~~~~~~----~~~~~~~~~~~d~~gH 51 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK--------------------------IIGGKSFSPYE----GDGNKVSPYYVSADGH 51 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc--------------------------cccCCCCCCCC----CCcccCCCCCCCCCCc
Confidence 78999999999999999999753 22223333210 0000001123578899
Q ss_pred CcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCC---CCCChHHHHHHHHHhHhCCceEEEEccCCC
Q 038881 245 GTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTG---NECYDADILAAFDMAIHDGVDVLSVSLGGG 321 (794)
Q Consensus 245 GThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G---~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~ 321 (794)
||||||||+ |+||+|+|+.+|+++....+ ..++...+++||+||+++|+||||||||..
T Consensus 52 GT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~ 113 (247)
T cd07491 52 GTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIK 113 (247)
T ss_pred HHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeecc
Confidence 999999996 56999999999999865311 135678899999999999999999999987
Q ss_pred CCCC---CCCHHHHHHHHHHhCCcEEEEecCCCCCCCC-CcC--CCCCceEEeccccC
Q 038881 322 PSKF---FNDSTAIGSFHAVKHGMVVICSAGNSGPTDS-TVS--NIAPWQITVGASTM 373 (794)
Q Consensus 322 ~~~~---~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~-~~~--~~ap~vitVgAs~~ 373 (794)
.... ....+..++.+|.++|++||+||||+|.... .++ ...|++|+|||++.
T Consensus 114 ~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~ 171 (247)
T cd07491 114 KPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADE 171 (247)
T ss_pred cccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCC
Confidence 3211 2566888888999999999999999997764 333 45689999999654
No 33
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=8.7e-40 Score=352.32 Aligned_cols=249 Identities=19% Similarity=0.224 Sum_probs=183.1
Q ss_pred cccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCC
Q 038881 154 ESNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNS 233 (794)
Q Consensus 154 ~~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 233 (794)
+...+|+.+++|+||+|+|||||||++||+|.++... ...++|.... .
T Consensus 27 ~~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~------------------------~~~~~~~~~~----~---- 74 (297)
T cd04059 27 NVTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP------------------------EASYDFNDND----P---- 74 (297)
T ss_pred ccHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc------------------------cccccccCCC----C----
Confidence 3678999999999999999999999999999754110 0122232210 0
Q ss_pred CCCCC--CCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCc
Q 038881 234 SFDTP--RDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGV 311 (794)
Q Consensus 234 ~~~~~--~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~ 311 (794)
...+ .|..||||||||||+|.... .....||||+|+|+.+|+++.. .....+..++.++.+ .+
T Consensus 75 -~~~~~~~~~~gHGT~vAgiiag~~~~--------~~~~~GvAp~a~l~~~~~~~~~-----~~~~~~~~~~~~~~~-~~ 139 (297)
T cd04059 75 -DPTPRYDDDNSHGTRCAGEIAAVGNN--------GICGVGVAPGAKLGGIRMLDGD-----VTDVVEAESLGLNPD-YI 139 (297)
T ss_pred -CCCCccccccccCcceeeEEEeecCC--------CcccccccccceEeEEEecCCc-----cccHHHHHHHhcccC-Cc
Confidence 1112 27889999999999998521 1134899999999999998754 344556666666554 46
Q ss_pred eEEEEccCCCCCCC----CCCHHHHHHHHHHh-----CCcEEEEecCCCCCCCC--CcC--CCCCceEEeccccCCCCcc
Q 038881 312 DVLSVSLGGGPSKF----FNDSTAIGSFHAVK-----HGMVVICSAGNSGPTDS--TVS--NIAPWQITVGASTMDRDFP 378 (794)
Q Consensus 312 dVIN~SlG~~~~~~----~~~~~~~a~~~a~~-----~Gv~vV~AAGN~G~~~~--~~~--~~ap~vitVgAs~~~~~~~ 378 (794)
+|||||||...... .......++.++.+ +|++||+||||+|.... ... ...|++|+|||++.+
T Consensus 140 ~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~---- 215 (297)
T cd04059 140 DIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN---- 215 (297)
T ss_pred eEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC----
Confidence 99999999873211 22234444445443 69999999999997322 222 356889999986432
Q ss_pred ceEEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHH
Q 038881 379 SYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQAL 458 (794)
Q Consensus 379 ~~~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~ 458 (794)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCC
Q 038881 459 LAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVA 538 (794)
Q Consensus 459 ~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~ 538 (794)
+.++.||++|+..
T Consensus 216 -----------------------------------------------------------------g~~~~~s~~g~~~-- 228 (297)
T cd04059 216 -----------------------------------------------------------------GVRASYSEVGSSV-- 228 (297)
T ss_pred -----------------------------------------------------------------CCCcCCCCCCCcE--
Confidence 4677899999988
Q ss_pred CCcccCceEeCCce-------EEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHH
Q 038881 539 PEILKPDITAPGVT-------IIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAI 611 (794)
Q Consensus 539 ~~~~KPDI~APG~~-------I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L 611 (794)
++.|||.. |+++.... ....|..++|||||||+|||++|||+|++|+|++.|||++|
T Consensus 229 ------~~~a~g~~~~~~~~~i~~~~~~~----------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L 292 (297)
T cd04059 229 ------LASAPSGGSGNPEASIVTTDLGG----------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHIL 292 (297)
T ss_pred ------EEEecCCCCCCCCCceEeCCCCC----------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHH
Confidence 99999987 66555431 01367889999999999999999999999999999999999
Q ss_pred HhcCc
Q 038881 612 MTTAS 616 (794)
Q Consensus 612 ~~TA~ 616 (794)
++||+
T Consensus 293 ~~TA~ 297 (297)
T cd04059 293 ALTAR 297 (297)
T ss_pred HHhcC
Confidence 99985
No 34
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=3.8e-40 Score=352.42 Aligned_cols=274 Identities=31% Similarity=0.476 Sum_probs=208.1
Q ss_pred EEEEecCCCCCCCCCCc-CCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCCCCCCCCCCcc
Q 038881 169 IIGNLDTGVWPESKSFS-DEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDGHGTH 247 (794)
Q Consensus 169 ~VaVIDTGId~~Hp~f~-~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~d~~gHGTh 247 (794)
+|||||||||++||+|. ++ ....++.+.+.|.++. .......|..+||||
T Consensus 1 ~V~viDtGid~~h~~~~~~~---------------------~~~~~~~~~~~~~~~~--------~~~~~~~~~~~HGT~ 51 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN---------------------FIWSKVPGGYNFVDGN--------PNPSPSDDDNGHGTH 51 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT---------------------EEEEEEEEEEETTTTB--------STTTSSSTSSSHHHH
T ss_pred CEEEEcCCcCCCChhHccCC---------------------cccccccceeeccCCC--------CCcCccccCCCccch
Confidence 69999999999999997 32 0112233344454331 112356678899999
Q ss_pred eeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhH-hCCceEEEEccCCCC---C
Q 038881 248 TLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAI-HDGVDVLSVSLGGGP---S 323 (794)
Q Consensus 248 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~-~~g~dVIN~SlG~~~---~ 323 (794)
|||||++.. . . ......|+||+|+|+.+|+++.. + .....++++|++++ +.+++|||||||... .
T Consensus 52 va~ii~~~~-~-~-----~~~~~~Gva~~a~l~~~~i~~~~--~--~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~ 120 (282)
T PF00082_consen 52 VAGIIAGNG-G-N-----NGPGINGVAPNAKLYSYKIFDNS--G--GTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPD 120 (282)
T ss_dssp HHHHHHHTT-S-S-----SSSSETCSSTTSEEEEEECSSTT--S--EEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSH
T ss_pred hhhhccccc-c-c-----ccccccccccccccccccccccc--c--cccccccchhhhhhhccCCccccccccccccccc
Confidence 999999985 2 1 22344899999999999998765 3 67888999999999 899999999999831 1
Q ss_pred CCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCC---cCCCCCceEEeccccCCCCccceEEecCCeEEeeeecCCCCCC
Q 038881 324 KFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDST---VSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLP 400 (794)
Q Consensus 324 ~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~---~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 400 (794)
....+.+..+...+.++|+++|+||||+|..... .+...+++|+||+++..
T Consensus 121 ~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~-------------------------- 174 (282)
T PF00082_consen 121 PSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN-------------------------- 174 (282)
T ss_dssp SHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT--------------------------
T ss_pred cccccccccccccccccCcceeeccccccccccccccccccccccccccccccc--------------------------
Confidence 1223345566668899999999999999876653 34456889999985421
Q ss_pred CCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCccccCC
Q 038881 401 SNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELLAD 480 (794)
Q Consensus 401 ~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~ 480 (794)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCceEEeeecCC
Q 038881 481 PHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEA 560 (794)
Q Consensus 481 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~ 560 (794)
+.++.||++|+.. .++++||||+|||.+|++.++..
T Consensus 175 -------------------------------------------~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~~~~~~ 210 (282)
T PF00082_consen 175 -------------------------------------------GQPASYSNYGGPS-DDGRIKPDIAAPGGNILSAVPGS 210 (282)
T ss_dssp -------------------------------------------SSBSTTSSBSTTE-TTCTTCEEEEEECSSEEEEETTT
T ss_pred -------------------------------------------ccccccccccccc-ccccccccccccccccccccccc
Confidence 3568899997543 27899999999999999888763
Q ss_pred CCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccccCCCcccccCCCCCCCCCcccc
Q 038881 561 AGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGA 640 (794)
Q Consensus 561 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~ 640 (794)
.. ..|..++|||||||+|||++|||+|++|+|++.+||.+|++||.++.... ....+..|||
T Consensus 211 ~~----------~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~--------~~~~~~~~G~ 272 (282)
T PF00082_consen 211 DR----------GSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN--------GEGYDNSYGW 272 (282)
T ss_dssp ES----------EEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT--------SSSSHHHHTT
T ss_pred cc----------ccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC--------CCCCCCCccC
Confidence 21 25788999999999999999999999999999999999999999886211 2345668899
Q ss_pred cccccccccC
Q 038881 641 GHIQPNLAMD 650 (794)
Q Consensus 641 G~vn~~~Al~ 650 (794)
|+||+.+|++
T Consensus 273 G~in~~~a~~ 282 (282)
T PF00082_consen 273 GLINAEKALN 282 (282)
T ss_dssp SBE-HHHHHH
T ss_pred ChhCHHHHhC
Confidence 9999999974
No 35
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.1e-39 Score=331.34 Aligned_cols=221 Identities=23% Similarity=0.263 Sum_probs=174.1
Q ss_pred ceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeeccc-ccccccCCCCCCCCCCCCCCCCC
Q 038881 167 DTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNK-GYAAAVGPLNSSFDTPRDKDGHG 245 (794)
Q Consensus 167 GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~-~~~~~~~~~~~~~~~~~d~~gHG 245 (794)
||+|||||||||++||+|.+.-. ..+.+.. .+ ........|..|||
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~--------------------------~~~~~~~~~~-------~~~~~~~~d~~gHG 47 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLAL--------------------------DGEVTIDLEI-------IVVSAEGGDKDGHG 47 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccc--------------------------cccccccccc-------ccCCCCCCCCCCcH
Confidence 79999999999999999976410 1111110 00 00123456788999
Q ss_pred cceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEEccCCCCCCC
Q 038881 246 THTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGGGPSKF 325 (794)
Q Consensus 246 ThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~ 325 (794)
|||||||++. +|+++|+.+|+++.. + .+..+.+++||+|+++++++|||||||.... .
T Consensus 48 T~vAgiia~~------------------~p~~~i~~~~v~~~~--~-~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~-~ 105 (222)
T cd07492 48 TACAGIIKKY------------------APEAEIGSIKILGED--G-RCNSFVLEKALRACVENDIRIVNLSLGGPGD-R 105 (222)
T ss_pred HHHHHHHHcc------------------CCCCeEEEEEEeCCC--C-CcCHHHHHHHHHHHHHCCCCEEEeCCCCCCC-C
Confidence 9999999864 699999999999876 3 4788999999999999999999999998732 2
Q ss_pred CCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCCCCCceEEeccccCCCCccceEEecCCeEEeeeecCCCCCCCCcee
Q 038881 326 FNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSKGLPSNKLF 405 (794)
Q Consensus 326 ~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 405 (794)
....+..++.++.++|+++|+||||++.... .+...+++|+||+.+.+.
T Consensus 106 ~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~------------------------------ 154 (222)
T cd07492 106 DFPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD------------------------------ 154 (222)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC------------------------------
Confidence 2345677788888999999999999986543 256678999999753221
Q ss_pred ceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCccccCCCCccc
Q 038881 406 PLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELLADPHLLP 485 (794)
Q Consensus 406 plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p 485 (794)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCceEEeeecCCCCCCC
Q 038881 486 ASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAYTEAAGPTN 565 (794)
Q Consensus 486 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~ 565 (794)
.. +.+++. +|+.|||.+|+++.+.
T Consensus 155 ---------------------------------------~~---~~~~~~--------~~~~apg~~i~~~~~~------ 178 (222)
T cd07492 155 ---------------------------------------PK---SFWYIY--------VEFSADGVDIIAPAPH------ 178 (222)
T ss_pred ---------------------------------------Cc---ccccCC--------ceEEeCCCCeEeecCC------
Confidence 11 112333 3999999999998776
Q ss_pred CCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCc
Q 038881 566 EDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTAS 616 (794)
Q Consensus 566 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 616 (794)
+.|..++|||||||+|||++|||+|++|+|+++|||++|++||+
T Consensus 179 -------~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 179 -------GRYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred -------CCEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 37899999999999999999999999999999999999999985
No 36
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=7.2e-39 Score=344.76 Aligned_cols=252 Identities=25% Similarity=0.277 Sum_probs=175.3
Q ss_pred ceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccc--cccccCCCCCCCCCCCCCCCC
Q 038881 167 DTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKG--YAAAVGPLNSSFDTPRDKDGH 244 (794)
Q Consensus 167 GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~--~~~~~~~~~~~~~~~~d~~gH 244 (794)
.|+|||||||||++||+|.+.-. ...+.+... +...............|..||
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gH 55 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSIS-------------------------SYSKNLVPKGGYDGKEAGETGDINDIVDKLGH 55 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccc-------------------------ccccccccCCCcCCccccccCCCCcCCCCCCc
Confidence 38999999999999999985310 000011000 000000000012345678999
Q ss_pred CcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEEccCCCCCC
Q 038881 245 GTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGGGPSK 324 (794)
Q Consensus 245 GThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~ 324 (794)
||||||+|++.. ...||||+|+|+.+|+++.. + .....+++++|++|++++++|||||||.....
T Consensus 56 GT~vAgiia~~~------------~~~GvAp~a~i~~~~v~~~~--~-~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~ 120 (294)
T cd07482 56 GTAVAGQIAANG------------NIKGVAPGIGIVSYRVFGSC--G-SAESSWIIKAIIDAADDGVDVINLSLGGYLII 120 (294)
T ss_pred HhHHHHHHhcCC------------CCceeCCCCEEEEEEeecCC--C-CcCHHHHHHHHHHHHHCCCCEEEeCCccCCCC
Confidence 999999999863 12499999999999999876 3 35788999999999999999999999986321
Q ss_pred CC--------CCHHHHHHHHHHhCCcEEEEecCCCCCCCCC----------------------cCCCCCceEEeccccCC
Q 038881 325 FF--------NDSTAIGSFHAVKHGMVVICSAGNSGPTDST----------------------VSNIAPWQITVGASTMD 374 (794)
Q Consensus 325 ~~--------~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~----------------------~~~~ap~vitVgAs~~~ 374 (794)
.. ...+..++..+.++|++||+||||+|..... .+...+++|+|||++.
T Consensus 121 ~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga~~~- 199 (294)
T cd07482 121 GGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSATDN- 199 (294)
T ss_pred CcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEEEEeeCC-
Confidence 11 1345666777889999999999999965411 1123345555554322
Q ss_pred CCccceEEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHH
Q 038881 375 RDFPSYVVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKG 454 (794)
Q Consensus 375 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~ 454 (794)
T Consensus 200 -------------------------------------------------------------------------------- 199 (294)
T cd07482 200 -------------------------------------------------------------------------------- 199 (294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHcCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCC
Q 038881 455 QQALLAGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGP 534 (794)
Q Consensus 455 ~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp 534 (794)
.+.++.||++|+
T Consensus 200 --------------------------------------------------------------------~~~~~~~S~~g~ 211 (294)
T cd07482 200 --------------------------------------------------------------------NGNLSSFSNYGN 211 (294)
T ss_pred --------------------------------------------------------------------CCCcCccccCCC
Confidence 246778999987
Q ss_pred CCCCCCcccCceEeCCceEEeeecCCCC---CCC------CCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCH-
Q 038881 535 SSVAPEILKPDITAPGVTIIAAYTEAAG---PTN------EDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSP- 604 (794)
Q Consensus 535 ~~~~~~~~KPDI~APG~~I~Sa~~~~~~---~~~------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp- 604 (794)
.. +|++|||+++......... ... .......+.|..++|||||||+|||++|||+|++|.|++
T Consensus 212 ~~-------~~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~ 284 (294)
T cd07482 212 SR-------IDLAAPGGDFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPP 284 (294)
T ss_pred Cc-------ceEECCCCCcccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCcH
Confidence 54 4999999988532211100 000 001123458899999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 038881 605 AAIKSAIMTT 614 (794)
Q Consensus 605 ~~ik~~L~~T 614 (794)
.|||++|++|
T Consensus 285 ~~v~~~L~~T 294 (294)
T cd07482 285 DEAIRILYNT 294 (294)
T ss_pred HHHHHHHhhC
Confidence 9999999986
No 37
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=3.7e-38 Score=334.06 Aligned_cols=244 Identities=25% Similarity=0.370 Sum_probs=187.1
Q ss_pred CCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCCCCCCCCCCC
Q 038881 164 YGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSSFDTPRDKDG 243 (794)
Q Consensus 164 ~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~d~~g 243 (794)
+|+||+|+|||+||+++||+|.+.... ...+.... ........|..+
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~--------------------------~~~~~~~~-------~~~~~~~~~~~~ 47 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSE--------------------------ASYYVAVN-------DAGYASNGDGDS 47 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccc--------------------------cccccccc-------cccCCCCCCCCC
Confidence 699999999999999999999864111 00000000 000124557889
Q ss_pred CCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEEccCCCCC
Q 038881 244 HGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGGGPS 323 (794)
Q Consensus 244 HGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~ 323 (794)
|||||||||+|+.. .....|+||+|+|+.+|+++... ..+....+.++++++++.+++|||||||....
T Consensus 48 HGT~vagiiag~~~---------~~~~~GiAp~a~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~ 116 (267)
T cd04848 48 HGTHVAGVIAAARD---------GGGMHGVAPDATLYSARASASAG--STFSDADIAAAYDFLAASGVRIINNSWGGNPA 116 (267)
T ss_pred hHHHHHHHHhcCcC---------CCCcccCCcCCEEEEEeccCCCC--cccchHHHHHHHHHHHhCCCeEEEccCCCCCc
Confidence 99999999999852 24568999999999999998752 13677889999999999999999999999842
Q ss_pred CC------------CCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCcC---------CCCCceEEeccccCCCCccceEE
Q 038881 324 KF------------FNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVS---------NIAPWQITVGASTMDRDFPSYVV 382 (794)
Q Consensus 324 ~~------------~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~---------~~ap~vitVgAs~~~~~~~~~~~ 382 (794)
.. ....+...+..+.++|++||+||||++....... ...+++|+||+++.+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~------- 189 (267)
T cd04848 117 IDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG------- 189 (267)
T ss_pred ccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC-------
Confidence 21 4455777778899999999999999986543332 2457899999865432
Q ss_pred ecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCc
Q 038881 383 VSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGA 462 (794)
Q Consensus 383 ~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga 462 (794)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCcccc--ccCCCCCCCCCC
Q 038881 463 VGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAA--FSSKGPSSVAPE 540 (794)
Q Consensus 463 ~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSS~Gp~~~~~~ 540 (794)
.... ||++|+..
T Consensus 190 --------------------------------------------------------------~~~~~~~s~~~~~~---- 203 (267)
T cd04848 190 --------------------------------------------------------------TIASYSYSNRCGVA---- 203 (267)
T ss_pred --------------------------------------------------------------Ccccccccccchhh----
Confidence 2222 47887643
Q ss_pred cccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcCc
Q 038881 541 ILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTAS 616 (794)
Q Consensus 541 ~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 616 (794)
..++++|||.+|+++.+.. ...|..++|||||||+|||++|||+|++|+|++++||++|++||+
T Consensus 204 -~~~~~~apG~~i~~~~~~~-----------~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 204 -ANWCLAAPGENIYSTDPDG-----------GNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred -hhheeecCcCceeecccCC-----------CCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 2347999999999987631 137889999999999999999999999999999999999999985
No 38
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-33 Score=308.62 Aligned_cols=355 Identities=21% Similarity=0.261 Sum_probs=230.5
Q ss_pred CCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEEccCCC
Q 038881 242 DGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGGG 321 (794)
Q Consensus 242 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~ 321 (794)
.-|||||||||+|+..+. ....||||+|+|+.+++.+..- |..-+...+.+|+..++++.+||||||+|-.
T Consensus 310 g~HGTHVAgIa~anhpe~--------p~~NGvAPgaqIvSl~IGD~RL-gsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPET--------PELNGVAPGAQIVSLKIGDGRL-GSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCcceehhhhccCCCCC--------ccccCCCCCCEEEEEEecCccc-cccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 459999999999996332 2457999999999999976542 2123456789999999999999999999987
Q ss_pred C-CCCCCCHHHHHHHHHHhCCcEEEEecCCCCCCCCCcCC---CCCceEEeccccCCCCccceEEecCCeEEeeeecCCC
Q 038881 322 P-SKFFNDSTAIGSFHAVKHGMVVICSAGNSGPTDSTVSN---IAPWQITVGASTMDRDFPSYVVVSNNKRYKGQSLSSK 397 (794)
Q Consensus 322 ~-~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~---~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~ 397 (794)
. -+.....+..+-..+.+.|+++|.||||+||.-++++. ....+|.|||.-......+.
T Consensus 381 a~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a~----------------- 443 (1304)
T KOG1114|consen 381 AHLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQAE----------------- 443 (1304)
T ss_pred CCCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHhh-----------------
Confidence 3 22233345444445668899999999999999888775 33588999984332111000
Q ss_pred CCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCccc
Q 038881 398 GLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNEL 477 (794)
Q Consensus 398 ~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~ 477 (794)
|.+.
T Consensus 444 -------y~~~--------------------------------------------------------------------- 447 (1304)
T KOG1114|consen 444 -------YSVR--------------------------------------------------------------------- 447 (1304)
T ss_pred -------hhhh---------------------------------------------------------------------
Confidence 0000
Q ss_pred cCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcccCceEeCCceEEeee
Q 038881 478 LADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEILKPDITAPGVTIIAAY 557 (794)
Q Consensus 478 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~Sa~ 557 (794)
..-...+..||||||+. ||-+--.|.|||+.|.|--
T Consensus 448 ------------------------------------------e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsVP 483 (1304)
T KOG1114|consen 448 ------------------------------------------EPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASVP 483 (1304)
T ss_pred ------------------------------------------ccCCCCccccccCCCCc--CCCcceEEecCCccccCCc
Confidence 00024578899999999 9999999999999987643
Q ss_pred cCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHh----hCCCCCHHHHHHHHHhcCccccCCCcccccCCCCCC
Q 038881 558 TEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKT----LHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKA 633 (794)
Q Consensus 558 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~ 633 (794)
.-.. ..-..|+|||||+|+++|.+|||++ .+-.|||..||.+|++||.+++..
T Consensus 484 ~~tl-----------q~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i------------ 540 (1304)
T KOG1114|consen 484 QYTL-----------QNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI------------ 540 (1304)
T ss_pred hhhh-----------hhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc------------
Confidence 2211 2557899999999999999999965 567899999999999999998543
Q ss_pred CCCcccccccccccccCCCccccCCchhhhhhhhcCCCCccceEecccccccCCCCCCCCCCCCCeEEeecCC---ceEE
Q 038881 634 TPFSYGAGHIQPNLAMDPGLVYDLTENDYLNFLCALGYNKTQIALFSDKTYRCPEYVSTANFNYPSITVPKLS---GSII 710 (794)
Q Consensus 634 ~~~~~G~G~vn~~~Al~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ps~~~~~~~---~~~~ 710 (794)
.++.||.|+|++.+|.+- |. +.--.|.-.++| +..-.| .+|... |-+.+.. .+..
T Consensus 541 d~faqG~GmlqVdkAyEy-L~-----q~~~~f~~~l~f----~~v~Vg--N~~srG----------IyLRep~~~~~p~e 598 (1304)
T KOG1114|consen 541 DSFAQGQGMLQVDKAYEY-LA-----QSDFSFPNALGF----INVNVG--NSCSRG----------IYLREPTQVCSPSE 598 (1304)
T ss_pred chhccCcceeehhHHHHH-HH-----HhhhcCCcccee----EEEeec--cccccc----------eEecCCcccCCccc
Confidence 478999999999999861 00 000111222222 011111 123221 1111110 1111
Q ss_pred EEEE----EEecCC----CceEEEEEeCCCCcEEEEEccEEEEecCCcEEEEEEEEEEcccccCCCCeEEEEEEEEe---
Q 038881 711 VSRT----VRNVGS----PGTYIARVRNPKGISVSVEPRSLKFLRVGEEKNFKVTIKVRKVRAATKDYVFGDLVWAD--- 779 (794)
Q Consensus 711 ~~~t----v~n~~~----~~ty~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~~~G~~~~~~--- 779 (794)
+++- +.|--. ...|.+.+.-..-..+.--|..+-+ .++.+.+.|+|+++. ...+.+++.|.--|
T Consensus 599 ~~i~VePiF~~~~e~~keki~Fe~~L~L~st~pwVq~p~~l~l--~~~~R~i~VrVDpt~---l~~G~hy~eV~gyD~~~ 673 (1304)
T KOG1114|consen 599 HTIGVEPIFENGEENEKEKISFEVQLSLASTQPWVQCPEYLML--ANQGRGINVRVDPTG---LAPGVHYTEVLGYDTAN 673 (1304)
T ss_pred cceeccccccCccccccccccceeeEeeecCCcceeCchhhee--ccCCceeEEEECCcC---CCCCcceEEEEEeecCC
Confidence 2211 122111 1223322221111124445777766 567899999999987 55556677776543
Q ss_pred -CCccEEEeEEEEE
Q 038881 780 -DKQHQVRSPIVVN 792 (794)
Q Consensus 780 -~~~~~v~~P~~~~ 792 (794)
+.++.+|||+.|-
T Consensus 674 p~~gplFrIPVTVi 687 (1304)
T KOG1114|consen 674 PSRGPLFRIPVTVI 687 (1304)
T ss_pred cccCceEEeeeEEE
Confidence 2579999999864
No 39
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.2e-33 Score=293.09 Aligned_cols=193 Identities=23% Similarity=0.241 Sum_probs=142.7
Q ss_pred CCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHh--HhCCceEE
Q 038881 237 TPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMA--IHDGVDVL 314 (794)
Q Consensus 237 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a--~~~g~dVI 314 (794)
...|.+||||||||||||. .|++|+++|+..++... ..+.+.++++|+ .+.+++||
T Consensus 32 ~~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~~-------~~~~~~~~i~~~~~~~~gv~VI 89 (247)
T cd07488 32 RNNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGIK-------SNNGQWQECLEAQQNGNNVKII 89 (247)
T ss_pred CCCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCCC-------CCCccHHHHHHHHHhcCCceEE
Confidence 3457899999999999997 35679999997666321 233456777787 56799999
Q ss_pred EEccCCCCCCC------CCCHHHHHHHHHHhC-CcEEEEecCCCCCCCCC-----cCCCCCceEEeccccCCCCccceEE
Q 038881 315 SVSLGGGPSKF------FNDSTAIGSFHAVKH-GMVVICSAGNSGPTDST-----VSNIAPWQITVGASTMDRDFPSYVV 382 (794)
Q Consensus 315 N~SlG~~~~~~------~~~~~~~a~~~a~~~-Gv~vV~AAGN~G~~~~~-----~~~~ap~vitVgAs~~~~~~~~~~~ 382 (794)
|||||...... ..+.+..++..+.++ |+++|+||||+|..... .+..++++|+|||++....
T Consensus 90 NmS~G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~------ 163 (247)
T cd07488 90 NHSYGEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD------ 163 (247)
T ss_pred EeCCccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC------
Confidence 99999873221 223466677776666 99999999999975422 2345789999999754321
Q ss_pred ecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCc
Q 038881 383 VSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGA 462 (794)
Q Consensus 383 ~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga 462 (794)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCC--CCCCCCC
Q 038881 463 VGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKG--PSSVAPE 540 (794)
Q Consensus 463 ~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~G--p~~~~~~ 540 (794)
....+.||++| |+. ++
T Consensus 164 ------------------------------------------------------------~~~~s~~sn~~~~~~~--~~ 181 (247)
T cd07488 164 ------------------------------------------------------------RFFASDVSNAGSEINS--YG 181 (247)
T ss_pred ------------------------------------------------------------cceecccccccCCCCC--CC
Confidence 01234556654 443 78
Q ss_pred cccCceEeCCceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCH------HHHHHHHHhc
Q 038881 541 ILKPDITAPGVTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSP------AAIKSAIMTT 614 (794)
Q Consensus 541 ~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp------~~ik~~L~~T 614 (794)
..||||+|||++|++ +. +.|..++|||||||||||++|||++++|++.+ .++|.+|+++
T Consensus 182 ~~~~di~APG~~i~s--~~-------------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 182 RRKVLIVAPGSNYNL--PD-------------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred CceeEEEEeeeeEEC--CC-------------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 899999999999998 22 36889999999999999999999999887764 4567777665
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.97 E-value=8.5e-31 Score=272.13 Aligned_cols=197 Identities=34% Similarity=0.486 Sum_probs=158.6
Q ss_pred CCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhH-hCCceEEE
Q 038881 237 TPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAI-HDGVDVLS 315 (794)
Q Consensus 237 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~-~~g~dVIN 315 (794)
...+..+||||||++|++... .....|+||+++|+.+|+..... ......+++++++++ ..+++|||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~---------~~~~~g~a~~a~i~~~~~~~~~~---~~~~~~~~~ai~~~~~~~~~~iin 106 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASAN---------NGGGVGVAPGAKLIPVKVLDGDG---SGSSSDIAAAIDYAAADQGADVIN 106 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCC---------CCCCEEeCCCCEEEEEEEecCCC---CcCHHHHHHHHHHHHhccCCCEEE
Confidence 455788999999999998852 12227999999999999988762 367889999999999 89999999
Q ss_pred EccCCCCCCCCCCHHHHHHHHHHhC-CcEEEEecCCCCCCCC---CcCCCCCceEEeccccCCCCccceEEecCCeEEee
Q 038881 316 VSLGGGPSKFFNDSTAIGSFHAVKH-GMVVICSAGNSGPTDS---TVSNIAPWQITVGASTMDRDFPSYVVVSNNKRYKG 391 (794)
Q Consensus 316 ~SlG~~~~~~~~~~~~~a~~~a~~~-Gv~vV~AAGN~G~~~~---~~~~~ap~vitVgAs~~~~~~~~~~~~~~~~~~~g 391 (794)
||||..... ....+...+..+.++ |+++|+||||.+.... ..+...+++|+||+++.+.
T Consensus 107 ~S~g~~~~~-~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~---------------- 169 (241)
T cd00306 107 LSLGGPGSP-PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG---------------- 169 (241)
T ss_pred eCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC----------------
Confidence 999998432 345577777788887 9999999999997766 4566789999999865432
Q ss_pred eecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccC
Q 038881 392 QSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQ 471 (794)
Q Consensus 392 ~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~ 471 (794)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCcc-ccccCCCCCCCCCCcccCceEeCC
Q 038881 472 ENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIM-AAFSSKGPSSVAPEILKPDITAPG 550 (794)
Q Consensus 472 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-a~fSS~Gp~~~~~~~~KPDI~APG 550 (794)
.. ..++++|+ |||+.|||
T Consensus 170 -----------------------------------------------------~~~~~~~~~~~--------~~~~~apg 188 (241)
T cd00306 170 -----------------------------------------------------TPASPSSNGGA--------GVDIAAPG 188 (241)
T ss_pred -----------------------------------------------------CccCCcCCCCC--------CceEEeCc
Confidence 11 13445554 55999999
Q ss_pred ceEEeeecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 038881 551 VTIIAAYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTT 614 (794)
Q Consensus 551 ~~I~Sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~T 614 (794)
.++.+.... ....+..++|||||||+|||++||++|++|++++.++|++|++|
T Consensus 189 ~~~~~~~~~-----------~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 189 GDILSSPTT-----------GGGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred CCccCcccC-----------CCCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 999875111 12478999999999999999999999999999999999999875
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=6e-24 Score=244.97 Aligned_cols=274 Identities=28% Similarity=0.406 Sum_probs=199.5
Q ss_pred ccccccc--cCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCC
Q 038881 155 SNSIWKK--ARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLN 232 (794)
Q Consensus 155 ~~~~~~~--g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~ 232 (794)
....|.. +.+|+|++|+|||+||+..||+|.+.. ...++|.+..
T Consensus 129 ~~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~--------------------------~~~~~~~~~~-------- 174 (508)
T COG1404 129 VGALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSA--------------------------VAGGDFVDGD-------- 174 (508)
T ss_pred cccccccccCCCCCCeEEEEeccCCCCCChhhhccc--------------------------ccccccccCC--------
Confidence 4567877 899999999999999999999997641 0112333220
Q ss_pred CCCC-CCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCC-
Q 038881 233 SSFD-TPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDG- 310 (794)
Q Consensus 233 ~~~~-~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g- 310 (794)
.. ...|.++|||||+|++++.... ......|+||+++++.+|++.... | .....+++++|++++..+
T Consensus 175 --~~~~~~d~~~hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~~~~-g-~~~~~~~~~~i~~~~~~~~ 243 (508)
T COG1404 175 --PEPPFLDDNGHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLGSGG-G-SGELSDVAEGIEGAANLGG 243 (508)
T ss_pred --CCCCCCCCCCCcceeeeeeeeeccc-------CCCccccccCCCcEEEEEeccCCC-C-cccHHHHHHHHHHHHhcCC
Confidence 11 2468899999999999984200 123358999999999999998663 3 577888899999999999
Q ss_pred -ceEEEEccCCCCCCCCCCHHHHHHHHHHhCC-cEEEEecCCCCCCCCC----cCCCC--CceEEeccccCCCCccceEE
Q 038881 311 -VDVLSVSLGGGPSKFFNDSTAIGSFHAVKHG-MVVICSAGNSGPTDST----VSNIA--PWQITVGASTMDRDFPSYVV 382 (794)
Q Consensus 311 -~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~G-v~vV~AAGN~G~~~~~----~~~~a--p~vitVgAs~~~~~~~~~~~ 382 (794)
+++||||+|..........+..++..+...| +++|+|+||.+..... .+... +.+++||+.+.
T Consensus 244 ~~~~in~s~g~~~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~--------- 314 (508)
T COG1404 244 PADVINLSLGGSLSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL--------- 314 (508)
T ss_pred CCcEEEecCCCCccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC---------
Confidence 9999999998511223445666666777777 9999999999976531 11111 35666666322
Q ss_pred ecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCc
Q 038881 383 VSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGA 462 (794)
Q Consensus 383 ~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga 462 (794)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCCCCCCcc
Q 038881 463 VGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSVAPEIL 542 (794)
Q Consensus 463 ~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~ 542 (794)
.+.++.||++|+..
T Consensus 315 ------------------------------------------------------------~~~~~~~s~~g~~~------ 328 (508)
T COG1404 315 ------------------------------------------------------------SDTVASFSNDGSPT------ 328 (508)
T ss_pred ------------------------------------------------------------CCccccccccCCCC------
Confidence 14678899999741
Q ss_pred cCceEeCCceEEe-----eecCCCCCCCCCCCCCCccceeeccccchhhHHHHHHHHHHhhCC-CCCHHHHHHHHHhcCc
Q 038881 543 KPDITAPGVTIIA-----AYTEAAGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHP-EWSPAAIKSAIMTTAS 616 (794)
Q Consensus 543 KPDI~APG~~I~S-----a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p-~lsp~~ik~~L~~TA~ 616 (794)
..+++|||.+|.+ ++++.. ..|..++||||++|||+|.+||+++.+| .+++.+++..+..++.
T Consensus 329 ~~~~~apg~~i~~~~~~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~ 397 (508)
T COG1404 329 GVDIAAPGVNILSLSAVNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAG 397 (508)
T ss_pred CcceeCCCccccccccceeeeCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhccc
Confidence 1299999999988 444421 2489999999999999999999999999 8999999999888876
Q ss_pred cccCCCcccccCCCCCCCCCcccccccccccccC
Q 038881 617 IQDNNKGQILNASSYKATPFSYGAGHIQPNLAMD 650 (794)
Q Consensus 617 ~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 650 (794)
.. ........++.|..+...+..
T Consensus 398 ~~-----------~~~~~~~~~~~~~~~~~~~~~ 420 (508)
T COG1404 398 LT-----------PLSGVDNLVGGGLANLDAAAT 420 (508)
T ss_pred cc-----------cCCccccccccCccccccccc
Confidence 30 001234456666666555544
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=7.8e-23 Score=208.99 Aligned_cols=173 Identities=17% Similarity=0.248 Sum_probs=112.4
Q ss_pred ccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCC
Q 038881 155 SNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSS 234 (794)
Q Consensus 155 ~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 234 (794)
...+|..|++|++|+++|+|.||||-|||++.+ ..-..+++|..+ .|.+.+
T Consensus 150 v~~awa~g~tgknvttaimddgvdymhpdlk~n------------------------ynaeasydfssn-----dpfpyp 200 (629)
T KOG3526|consen 150 VAEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN------------------------YNAEASYDFSSN-----DPFPYP 200 (629)
T ss_pred HHHHHhhcccCCCceEEeecCCchhcCcchhcc------------------------cCceeecccccC-----CCCCCC
Confidence 578999999999999999999999999999742 222334455432 222211
Q ss_pred CCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHh-CCceE
Q 038881 235 FDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIH-DGVDV 313 (794)
Q Consensus 235 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~-~g~dV 313 (794)
.....-.+.|||.|||-+++... ++.+| .|||.+.++..+|+++. ....++++|-...-+ ...+|
T Consensus 201 rytddwfnshgtrcagev~aard--ngicg------vgvaydskvagirmldq------pymtdlieansmghep~kihi 266 (629)
T KOG3526|consen 201 RYTDDWFNSHGTRCAGEVVAARD--NGICG------VGVAYDSKVAGIRMLDQ------PYMTDLIEANSMGHEPSKIHI 266 (629)
T ss_pred cccchhhhccCccccceeeeecc--CCcee------eeeeeccccceeeecCC------chhhhhhhhcccCCCCceEEE
Confidence 11111268999999998887653 33455 59999999999999985 356677666433222 36789
Q ss_pred EEEccCCCCCCC-CCCH---HHHHHHHHHhC-----CcEEEEecCCCCCC-CCCcC--CCCCceEEecc
Q 038881 314 LSVSLGGGPSKF-FNDS---TAIGSFHAVKH-----GMVVICSAGNSGPT-DSTVS--NIAPWQITVGA 370 (794)
Q Consensus 314 IN~SlG~~~~~~-~~~~---~~~a~~~a~~~-----Gv~vV~AAGN~G~~-~~~~~--~~ap~vitVgA 370 (794)
.+-|||...... .+.| ..+|+.+-+++ |-++|.|.|..|.+ .|... ..+-|.|++-+
T Consensus 267 ysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisins 335 (629)
T KOG3526|consen 267 YSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINS 335 (629)
T ss_pred EecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeeh
Confidence 999999874322 2222 33333333333 56899999987743 22222 23456666654
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.71 E-value=7.3e-17 Score=177.84 Aligned_cols=101 Identities=23% Similarity=0.295 Sum_probs=79.4
Q ss_pred CcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhC---CceEEEEccCCCCCCC---CCCHHHHHHHHHHhCC
Q 038881 268 GTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHD---GVDVLSVSLGGGPSKF---FNDSTAIGSFHAVKHG 341 (794)
Q Consensus 268 ~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~---g~dVIN~SlG~~~~~~---~~~~~~~a~~~a~~~G 341 (794)
....||||+|+|+.|++++.. ...++.++.+++.+ +++|||+|||...... +.+.+..++.+|..+|
T Consensus 81 ~~~~gvAP~a~i~~~~~~~~~-------~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~G 153 (361)
T cd04056 81 EYAGAIAPGANITLYFAPGTV-------TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQG 153 (361)
T ss_pred HHHHhccCCCeEEEEEECCcC-------ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCC
Confidence 346899999999999997532 34577788888876 9999999999973221 2355777778899999
Q ss_pred cEEEEecCCCCCCCC-----------CcCCCCCceEEeccccCCC
Q 038881 342 MVVICSAGNSGPTDS-----------TVSNIAPWQITVGASTMDR 375 (794)
Q Consensus 342 v~vV~AAGN~G~~~~-----------~~~~~ap~vitVgAs~~~~ 375 (794)
|+||+|+||+|...+ .++..+|||++||+++...
T Consensus 154 itvvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 154 ITVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred eEEEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 999999999997654 2346789999999987654
No 44
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.31 E-value=1.2e-11 Score=117.94 Aligned_cols=117 Identities=31% Similarity=0.363 Sum_probs=91.3
Q ss_pred CceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCccccCC-
Q 038881 402 NKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELLAD- 480 (794)
Q Consensus 402 ~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~~~- 480 (794)
....+++|. ..|...++...+++|||+||+|+.|.+.+|..+++++||.|+|++|+..........
T Consensus 25 ~~~~~lv~~-------------g~g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~ 91 (143)
T cd02133 25 GKTYELVDA-------------GLGTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGE 91 (143)
T ss_pred CcEEEEEEc-------------cCCchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCC
Confidence 456778873 345556666778999999999999999999999999999999999987643222211
Q ss_pred CCcccEEEEeccchHHHHHHHhcCCCcEEEEEeceeeecCCCCCccccccCCCCCC
Q 038881 481 PHLLPASHINFTDGADLFRDVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSS 536 (794)
Q Consensus 481 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~ 536 (794)
...+|+++|+.++|+.|.+++++ .+++.+..+.. ..+.+.++.||||||+.
T Consensus 92 ~~~iP~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 92 AVFIPVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred CCeEeEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 24689999999999999999988 45555554444 45667899999999963
No 45
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.25 E-value=5.6e-11 Score=111.00 Aligned_cols=123 Identities=42% Similarity=0.727 Sum_probs=98.2
Q ss_pred EEecCCeEEeeeecCCCCCCCCceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCc-hhhhHHHHHHH
Q 038881 381 VVVSNNKRYKGQSLSSKGLPSNKLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDN-ARIDKGQQALL 459 (794)
Q Consensus 381 ~~~~~~~~~~g~~~~~~~~~~~~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~-~~~~~~~~~~~ 459 (794)
+.|+|++++.|++++...+ ..+++++..... .......|.+..+...+++||||||+|+.| .+.+|..++++
T Consensus 2 i~LGng~~i~G~sl~~~~~---~~~~~~~~~~~~----~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~ 74 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL---KTYPLVYKSANS----GDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKA 74 (126)
T ss_pred EEeCCCCEEEEEEccCCCC---CccceEeccCcC----CCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHH
Confidence 6789999999999996543 356777632211 223457899888888999999999999999 99999999999
Q ss_pred cCceEEEEeccCCCCccccCCCCcccEEEEeccchHHHHHHHhcCCCcEEE
Q 038881 460 AGAVGMVLANAQENGNELLADPHLLPASHINFTDGADLFRDVNSTKRPVGY 510 (794)
Q Consensus 460 ~Ga~gvi~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 510 (794)
+||.|+|++++.............+|++.|+.++|..|++|++++.+++++
T Consensus 75 ~GA~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 75 AGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred cCCcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 999999999987643333333467999999999999999999998776554
No 46
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.89 E-value=3.6e-09 Score=90.72 Aligned_cols=78 Identities=27% Similarity=0.347 Sum_probs=57.8
Q ss_pred cEEEEeCCCCCCCCccccccccchHHHHHHHHHhcCCC----CCCCcceEEEecceeeeEEEEeCHHHHHHHHcCCCeEE
Q 038881 52 HHCCQKGAHSHGPELSAVDLHRVTESHYEFLGSFLHGN----DNPEDAIFYSYTRHINGFAAKLDDAVAAEIAKHPKVVS 127 (794)
Q Consensus 52 ~YIV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~y~~~~ng~s~~~~~~~i~~L~~~p~V~~ 127 (794)
+|||+|++.... ......|.+++.+++.+. .....++.+.|...||||+++++++++++|+++|+|++
T Consensus 1 ~YIV~~k~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~ 72 (82)
T PF05922_consen 1 RYIVVFKDDASA--------ASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKS 72 (82)
T ss_dssp EEEEEE-TTSTH--------HCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEE
T ss_pred CEEEEECCCCCc--------chhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEE
Confidence 699999998543 223567777777554321 34567899999999999999999999999999999999
Q ss_pred EEecceeccc
Q 038881 128 VFLNQGRKLH 137 (794)
Q Consensus 128 v~~~~~~~~~ 137 (794)
|+||+.++++
T Consensus 73 Ve~D~~v~l~ 82 (82)
T PF05922_consen 73 VEPDQVVSLH 82 (82)
T ss_dssp EEEECEEEE-
T ss_pred EEeCceEecC
Confidence 9999988764
No 47
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.83 E-value=1.5e-08 Score=92.26 Aligned_cols=82 Identities=22% Similarity=0.377 Sum_probs=69.0
Q ss_pred hccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCccc--c--CCCCcccEEEEeccchHHH
Q 038881 422 VALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNEL--L--ADPHLLPASHINFTDGADL 497 (794)
Q Consensus 422 ~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~--~--~~~~~~p~~~i~~~~g~~l 497 (794)
....|.+.++...+++|||+|++||.|+|.+|..+|+++||.++|+||+....... . .....+|+++|+..+|+.|
T Consensus 29 ~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~i 108 (120)
T cd02129 29 SSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLDI 108 (120)
T ss_pred CcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHHH
Confidence 45689999988889999999999999999999999999999999999987631111 1 1345789999999999999
Q ss_pred HHHHhc
Q 038881 498 FRDVNS 503 (794)
Q Consensus 498 ~~~~~~ 503 (794)
.+.+.+
T Consensus 109 ~~~l~~ 114 (120)
T cd02129 109 QQTFGD 114 (120)
T ss_pred HHHhcc
Confidence 998864
No 48
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.82 E-value=1.6e-08 Score=95.13 Aligned_cols=89 Identities=18% Similarity=0.122 Sum_probs=74.0
Q ss_pred hccccCCCCC--CCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCc-cc---cCCCCcccEEEEeccchH
Q 038881 422 VALLCEAGTL--DPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGN-EL---LADPHLLPASHINFTDGA 495 (794)
Q Consensus 422 ~~~~c~~~~~--~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~-~~---~~~~~~~p~~~i~~~~g~ 495 (794)
....|.+... ++.++.|+|+|++||.|+|.+|..+|+++||.++|+||+...+. .+ ......+|+++|+..+|+
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~ 122 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGM 122 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHH
Confidence 3568998877 56789999999999999999999999999999999999986321 11 112347899999999999
Q ss_pred HHHHHHhcCCCcEEE
Q 038881 496 DLFRDVNSTKRPVGY 510 (794)
Q Consensus 496 ~l~~~~~~~~~~~~~ 510 (794)
.|++++..+.+.+++
T Consensus 123 ~l~~~l~~G~~Vtv~ 137 (138)
T cd02122 123 EILELLERGISVTMV 137 (138)
T ss_pred HHHHHHHcCCcEEEe
Confidence 999999988776654
No 49
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.81 E-value=1.5e-08 Score=93.92 Aligned_cols=88 Identities=28% Similarity=0.318 Sum_probs=73.1
Q ss_pred ccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCcc---ccC--CCCcccEEEEeccchHHH
Q 038881 423 ALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNE---LLA--DPHLLPASHINFTDGADL 497 (794)
Q Consensus 423 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~---~~~--~~~~~p~~~i~~~~g~~l 497 (794)
...|.+.++...+++|||+||+|+.|.|.+|..+++++||.++|++|+...... ... ....+|+++|+..+|+.|
T Consensus 29 ~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l 108 (122)
T cd04816 29 PAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAAL 108 (122)
T ss_pred ccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHHH
Confidence 467998888888999999999999999999999999999999999998763211 111 345699999999999999
Q ss_pred HHHHhcCCCcEEE
Q 038881 498 FRDVNSTKRPVGY 510 (794)
Q Consensus 498 ~~~~~~~~~~~~~ 510 (794)
++++..+.+.+++
T Consensus 109 ~~~l~~g~~v~~~ 121 (122)
T cd04816 109 RRRLGAGETLELD 121 (122)
T ss_pred HHHHcCCCEEEEe
Confidence 9999887665543
No 50
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.78 E-value=2.9e-08 Score=90.92 Aligned_cols=89 Identities=17% Similarity=0.268 Sum_probs=72.6
Q ss_pred ccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCC-cc-c--cC----CCCcccEEEEeccch
Q 038881 423 ALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENG-NE-L--LA----DPHLLPASHINFTDG 494 (794)
Q Consensus 423 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~-~~-~--~~----~~~~~p~~~i~~~~g 494 (794)
...|.+... ..+++|||+|++||.|+|.+|..+|+++||.++|+||+.... .. + .. ....+|+++|+..+|
T Consensus 21 ~~gC~~~~~-~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELRN-IHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCCC-ccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 467987543 568999999999999999999999999999999999986531 11 1 11 234789999999999
Q ss_pred HHHHHHHhcCCCcEEEEE
Q 038881 495 ADLFRDVNSTKRPVGYLT 512 (794)
Q Consensus 495 ~~l~~~~~~~~~~~~~i~ 512 (794)
+.|++.+..+..+++.|.
T Consensus 100 ~~L~~~l~~g~~~~~~~~ 117 (118)
T cd02127 100 YMIRKTLERLGLPYAIIN 117 (118)
T ss_pred HHHHHHHHcCCceEEeee
Confidence 999999999888777653
No 51
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.70 E-value=2e-08 Score=89.69 Aligned_cols=79 Identities=30% Similarity=0.402 Sum_probs=64.4
Q ss_pred ccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCC----CccccCCCCcccEEEEeccchHHHH
Q 038881 423 ALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQEN----GNELLADPHLLPASHINFTDGADLF 498 (794)
Q Consensus 423 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~----~~~~~~~~~~~p~~~i~~~~g~~l~ 498 (794)
...|.+..+...+++||||||+||.|+|.+|..+++++||.|+|++|.... ..........+|+++|+..+|+.|+
T Consensus 19 ~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~ 98 (101)
T PF02225_consen 19 EGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALL 98 (101)
T ss_dssp CCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHH
T ss_pred cccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhh
Confidence 456777788889999999999999999999999999999999999992211 2223445678999999999999999
Q ss_pred HHH
Q 038881 499 RDV 501 (794)
Q Consensus 499 ~~~ 501 (794)
+|+
T Consensus 99 ~~i 101 (101)
T PF02225_consen 99 AYI 101 (101)
T ss_dssp HHH
T ss_pred ccC
Confidence 985
No 52
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.68 E-value=7.4e-08 Score=88.78 Aligned_cols=88 Identities=25% Similarity=0.194 Sum_probs=71.3
Q ss_pred hccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCcccc----CCCCcccEEEEeccchHHH
Q 038881 422 VALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELL----ADPHLLPASHINFTDGADL 497 (794)
Q Consensus 422 ~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~----~~~~~~p~~~i~~~~g~~l 497 (794)
....|.+.... .+++|||+||+|+.|.|.+|..+++++||.|+|++|+........ .....+|+++|+.++|..|
T Consensus 26 ~~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l 104 (118)
T cd04818 26 NTDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDAL 104 (118)
T ss_pred cccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHH
Confidence 45689888773 469999999999999999999999999999999999876421111 1234699999999999999
Q ss_pred HHHHhcCCCcEEE
Q 038881 498 FRDVNSTKRPVGY 510 (794)
Q Consensus 498 ~~~~~~~~~~~~~ 510 (794)
++|++.+.+.+++
T Consensus 105 ~~~l~~g~~v~v~ 117 (118)
T cd04818 105 KAALAAGGTVTVT 117 (118)
T ss_pred HHHHhcCCcEEEe
Confidence 9999987665543
No 53
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.67 E-value=7.8e-08 Score=89.43 Aligned_cols=86 Identities=23% Similarity=0.349 Sum_probs=69.3
Q ss_pred ccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCC-----ccc--c-----CCCCcccEEEEe
Q 038881 423 ALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENG-----NEL--L-----ADPHLLPASHIN 490 (794)
Q Consensus 423 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~-----~~~--~-----~~~~~~p~~~i~ 490 (794)
...|.+... +.+++|||+|++||.|+|.+|..+++++||.++|++|+.... ... . .....+|+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 467987654 557899999999999999999999999999999999876532 111 1 123578999999
Q ss_pred ccchHHHHHHHhcCCCcEE
Q 038881 491 FTDGADLFRDVNSTKRPVG 509 (794)
Q Consensus 491 ~~~g~~l~~~~~~~~~~~~ 509 (794)
..+|+.|++++..+.+.++
T Consensus 106 ~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred HHHHHHHHHHHHhCCceEE
Confidence 9999999999988765544
No 54
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.63 E-value=1.2e-07 Score=88.42 Aligned_cols=88 Identities=25% Similarity=0.350 Sum_probs=72.2
Q ss_pred hccccCCCC--CCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCc-cc-c----CCCCcccEEEEeccc
Q 038881 422 VALLCEAGT--LDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGN-EL-L----ADPHLLPASHINFTD 493 (794)
Q Consensus 422 ~~~~c~~~~--~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~-~~-~----~~~~~~p~~~i~~~~ 493 (794)
....|.++. +...+++|||+||+|+.|.+.+|..+++++||.|+|++++..... .. . .....+|++.|+..+
T Consensus 29 ~~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~ 108 (126)
T cd00538 29 PLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYAD 108 (126)
T ss_pred ceEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHH
Confidence 345698877 778899999999999999999999999999999999999876321 11 1 134579999999999
Q ss_pred hHHHHHHHhcCCCcEE
Q 038881 494 GADLFRDVNSTKRPVG 509 (794)
Q Consensus 494 g~~l~~~~~~~~~~~~ 509 (794)
|..|++++.++.+.++
T Consensus 109 g~~l~~~~~~~~~v~~ 124 (126)
T cd00538 109 GEALLSLLEAGKTVTV 124 (126)
T ss_pred HHHHHHHHhcCCceEE
Confidence 9999999998665443
No 55
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.62 E-value=4.5e-07 Score=82.69 Aligned_cols=90 Identities=22% Similarity=0.340 Sum_probs=62.8
Q ss_pred EEeecCCceEEEEEEEEecCC-CceEEEEEeC--------CCC----------c-EEEEEccEEEEecCCcEEEEEEEEE
Q 038881 700 ITVPKLSGSIIVSRTVRNVGS-PGTYIARVRN--------PKG----------I-SVSVEPRSLKFLRVGEEKNFKVTIK 759 (794)
Q Consensus 700 ~~~~~~~~~~~~~~tv~n~~~-~~ty~~~~~~--------~~g----------~-~v~~~p~~~~~~~~~~~~~~~vt~~ 759 (794)
|++++.....++++||+|.|+ ..+|+++... ..| . .+...|.+|++ ++|++++|+|+++
T Consensus 1 i~L~d~~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~ 79 (112)
T PF06280_consen 1 ISLKDTGNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTIT 79 (112)
T ss_dssp EEEEEE-SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE
T ss_pred CCccccCCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEE
Confidence 345555667899999999999 9999998651 011 1 67788899999 8999999999999
Q ss_pred Eccc-ccCCCCeEEEEEEEEeCCc-cEEEeEEE
Q 038881 760 VRKV-RAATKDYVFGDLVWADDKQ-HQVRSPIV 790 (794)
Q Consensus 760 ~~~~-~~~~~~~~~G~~~~~~~~~-~~v~~P~~ 790 (794)
+... ....+.+++|+|.++++.. +.++|||+
T Consensus 80 ~p~~~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 80 PPSGLDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp --GGGHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred ehhcCCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 9552 2356899999999998655 49999995
No 56
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.61 E-value=1.4e-07 Score=87.40 Aligned_cols=86 Identities=26% Similarity=0.292 Sum_probs=69.9
Q ss_pred cccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCcc----ccCCCCcccEEEEeccchHHHHH
Q 038881 424 LLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNE----LLADPHLLPASHINFTDGADLFR 499 (794)
Q Consensus 424 ~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~----~~~~~~~~p~~~i~~~~g~~l~~ 499 (794)
..|.+.++ +.+++|||+|++||.|.|.+|..+++++||.++|+||+...+.. .......+|+++|+..+|+.|++
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~ 110 (122)
T cd02130 32 LGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVA 110 (122)
T ss_pred CCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHH
Confidence 46876655 35799999999999999999999999999999999998732211 11224569999999999999999
Q ss_pred HHhcCCCcEEE
Q 038881 500 DVNSTKRPVGY 510 (794)
Q Consensus 500 ~~~~~~~~~~~ 510 (794)
.+..+.+.+++
T Consensus 111 ~l~~g~~v~~~ 121 (122)
T cd02130 111 ALANGGEVSAN 121 (122)
T ss_pred HHhcCCcEEEe
Confidence 99988776554
No 57
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=2.9e-07 Score=102.71 Aligned_cols=159 Identities=14% Similarity=0.159 Sum_probs=100.3
Q ss_pred ccccccccCCCCceEEEEecCCCCCCCCCCcCCCCCCCCCccccccccCCCccccccccccceeecccccccccCCCCCC
Q 038881 155 SNSIWKKARYGEDTIIGNLDTGVWPESKSFSDEGLGPIPSKWKGICENDKDAKFLCNRKLIGARYFNKGYAAAVGPLNSS 234 (794)
Q Consensus 155 ~~~~~~~g~~G~GV~VaVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~g~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 234 (794)
....|..+++|.++.|+|.|+|++..||+.... ....+.+++... +..+..
T Consensus 22 v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~------------------------~~~~~s~d~~~~-----~~~p~~ 72 (431)
T KOG3525|consen 22 VQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN------------------------YDPLGSYDVNRH-----DNDPEP 72 (431)
T ss_pred eeeccccCCCCCceEEEEeeccccccCcccccc------------------------cCcceeEeeecC-----CCCccc
Confidence 568999999999999999999999999998642 112233333321 111101
Q ss_pred CCCCCCCCCCCcceeecccccccccccccccCCCcccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHh-CCceE
Q 038881 235 FDTPRDKDGHGTHTLSTAGGNFVAKASVFGLGKGTAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIH-DGVDV 313 (794)
Q Consensus 235 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~-~g~dV 313 (794)
..+....+.|||-||+-.+.... . ..-..|+++++++..++++... ..+...+...... .-+++
T Consensus 73 ~~~~~~~~~~g~~Ca~~~a~~~~--~------~~C~vg~~~~~~~~g~~~l~~~-------v~~~~~~~~~~~~~~~~di 137 (431)
T KOG3525|consen 73 RCDGTNENKHGTRCAGCVAARAN--N------LTCGVGVAYNATIGGIRMLAGC-------VSDAVEAPSLGFGPCHIDI 137 (431)
T ss_pred ccCCCCccccCCCCCcccccccC--C------CcCCCCcccCccccceeeeeee-------cccceecccccCCCCCcee
Confidence 12223468899999999998741 1 1223799999999999998643 1133333332222 35789
Q ss_pred EEEccCCCCCC-CCCC---HHHHHHHH-----HHhCCcEEEEecCCCCCCCCC
Q 038881 314 LSVSLGGGPSK-FFND---STAIGSFH-----AVKHGMVVICSAGNSGPTDST 357 (794)
Q Consensus 314 IN~SlG~~~~~-~~~~---~~~~a~~~-----a~~~Gv~vV~AAGN~G~~~~~ 357 (794)
-..|||..... .... ....+... ...+|-++|+|.||.|.....
T Consensus 138 ~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d~ 190 (431)
T KOG3525|consen 138 YSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGDS 190 (431)
T ss_pred ecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCccccccc
Confidence 99999987321 1111 12222222 335678999999998865433
No 58
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.57 E-value=2e-07 Score=88.23 Aligned_cols=84 Identities=24% Similarity=0.306 Sum_probs=68.4
Q ss_pred ccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCcccc-----C-CCCcccEEEEeccchHH
Q 038881 423 ALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELL-----A-DPHLLPASHINFTDGAD 496 (794)
Q Consensus 423 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~-----~-~~~~~p~~~i~~~~g~~ 496 (794)
...|.+.. .+++|||+|++||.|+|.+|..+++++||.++|+||+........ . ....+|+++|+..+|+.
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 46798764 479999999999999999999999999999999999765321111 1 13579999999999999
Q ss_pred HHHHHhcCCCcEE
Q 038881 497 LFRDVNSTKRPVG 509 (794)
Q Consensus 497 l~~~~~~~~~~~~ 509 (794)
|++.+..+.+.++
T Consensus 125 L~~~l~~g~~Vtv 137 (139)
T cd02132 125 LNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHcCCcEEE
Confidence 9999998776544
No 59
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.56 E-value=2.2e-07 Score=87.12 Aligned_cols=75 Identities=24% Similarity=0.362 Sum_probs=61.7
Q ss_pred CCCCCCccceEEEEecCCch-----hhhHHHHHHHcCceEEEEeccC--CCCc-cccCC---CCcccEEEEeccchHHHH
Q 038881 430 TLDPKKVKGKILVCLRGDNA-----RIDKGQQALLAGAVGMVLANAQ--ENGN-ELLAD---PHLLPASHINFTDGADLF 498 (794)
Q Consensus 430 ~~~~~~~~gkivl~~~g~~~-----~~~~~~~~~~~Ga~gvi~~n~~--~~~~-~~~~~---~~~~p~~~i~~~~g~~l~ 498 (794)
++...+++|||+|++||.|. |.+|.++++++||.++|+||+. +... ....+ ...+|+++|+..+|+.|+
T Consensus 49 d~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~ 128 (139)
T cd04817 49 SYICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALL 128 (139)
T ss_pred cccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHH
Confidence 45566899999999999999 9999999999999999999997 3211 11111 458999999999999999
Q ss_pred HHHhcC
Q 038881 499 RDVNST 504 (794)
Q Consensus 499 ~~~~~~ 504 (794)
..+...
T Consensus 129 ~~l~~~ 134 (139)
T cd04817 129 AALGQS 134 (139)
T ss_pred HHhcCC
Confidence 988543
No 60
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.55 E-value=2.7e-07 Score=85.68 Aligned_cols=88 Identities=20% Similarity=0.167 Sum_probs=69.0
Q ss_pred ccccCCCCCC--CC----CccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCcc-c----------cCCCCccc
Q 038881 423 ALLCEAGTLD--PK----KVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNE-L----------LADPHLLP 485 (794)
Q Consensus 423 ~~~c~~~~~~--~~----~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~-~----------~~~~~~~p 485 (794)
...|.+.... +. ...++|+|++||.|+|.+|..+|+++||.++|+||+.+.... . ......+|
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP 101 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIP 101 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEe
Confidence 4678876543 22 378999999999999999999999999999999998653211 1 01223689
Q ss_pred EEEEeccchHHHHHHHhcCCCcEEE
Q 038881 486 ASHINFTDGADLFRDVNSTKRPVGY 510 (794)
Q Consensus 486 ~~~i~~~~g~~l~~~~~~~~~~~~~ 510 (794)
+++|+..+|+.|+..+..+...+++
T Consensus 102 ~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 102 SALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred EEEECHHHHHHHHHHHhcCCeEEEe
Confidence 9999999999999999988765543
No 61
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.52 E-value=3.8e-07 Score=84.90 Aligned_cols=88 Identities=17% Similarity=0.148 Sum_probs=68.9
Q ss_pred hccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCccc-cCCCCcccEEEEeccchHHHHHH
Q 038881 422 VALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNEL-LADPHLLPASHINFTDGADLFRD 500 (794)
Q Consensus 422 ~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~-~~~~~~~p~~~i~~~~g~~l~~~ 500 (794)
....|.+...+..+++|||+|++||.|.|.+|..+++++||.++|+||+.+..... ..+...+|.+.+ .++|+.|++.
T Consensus 40 ~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~~ 118 (129)
T cd02124 40 ADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWIDA 118 (129)
T ss_pred CcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHHH
Confidence 34689987666668999999999999999999999999999999999987643211 122334566666 9999999999
Q ss_pred HhcCCCcEEE
Q 038881 501 VNSTKRPVGY 510 (794)
Q Consensus 501 ~~~~~~~~~~ 510 (794)
+..+.+.+++
T Consensus 119 l~~G~~vtv~ 128 (129)
T cd02124 119 LAAGSNVTVD 128 (129)
T ss_pred HhcCCeEEEe
Confidence 9887665543
No 62
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.51 E-value=3.1e-07 Score=83.93 Aligned_cols=81 Identities=20% Similarity=0.238 Sum_probs=65.8
Q ss_pred hccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCC-c-ccc----CCCCcccEEEEeccchH
Q 038881 422 VALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENG-N-ELL----ADPHLLPASHINFTDGA 495 (794)
Q Consensus 422 ~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~-~-~~~----~~~~~~p~~~i~~~~g~ 495 (794)
....|.+. +..+++|||+|++||.|+|.+|..+++++||.++|+||+.... . ... .....+|+++|+..+|+
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~ 103 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYH 103 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHH
Confidence 35689766 5588999999999999999999999999999999999887642 1 111 22347999999999999
Q ss_pred HHHHHHhcC
Q 038881 496 DLFRDVNST 504 (794)
Q Consensus 496 ~l~~~~~~~ 504 (794)
.|+.++..+
T Consensus 104 ~L~~l~~~~ 112 (117)
T cd04813 104 LLSSLLPKS 112 (117)
T ss_pred HHHHhcccc
Confidence 999877643
No 63
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.44 E-value=7e-07 Score=85.91 Aligned_cols=84 Identities=18% Similarity=0.152 Sum_probs=69.3
Q ss_pred ccccCCCCCCC---CCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCc-cccC-----CCCcccEEEEeccc
Q 038881 423 ALLCEAGTLDP---KKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGN-ELLA-----DPHLLPASHINFTD 493 (794)
Q Consensus 423 ~~~c~~~~~~~---~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~-~~~~-----~~~~~p~~~i~~~~ 493 (794)
...|.+....+ .++.|+|+|++||.|+|.+|..+|+++||.++|++|+..... .... ....+|+++|+..+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 46898777644 789999999999999999999999999999999999875421 1111 13479999999999
Q ss_pred hHHHHHHHhcCCC
Q 038881 494 GADLFRDVNSTKR 506 (794)
Q Consensus 494 g~~l~~~~~~~~~ 506 (794)
|+.|+.++.....
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999987654
No 64
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=98.21 E-value=1.1e-05 Score=75.28 Aligned_cols=76 Identities=29% Similarity=0.362 Sum_probs=62.2
Q ss_pred CCCCCCccceEEEEecCCc--hhhhHHHHHHHcCceEEEEeccCCCCcccc-------CCCCcccEEEEeccchHHHHHH
Q 038881 430 TLDPKKVKGKILVCLRGDN--ARIDKGQQALLAGAVGMVLANAQENGNELL-------ADPHLLPASHINFTDGADLFRD 500 (794)
Q Consensus 430 ~~~~~~~~gkivl~~~g~~--~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~-------~~~~~~p~~~i~~~~g~~l~~~ 500 (794)
++...+++|||+|++++.+ .+.+|..++.++||.|+|++|+........ .....+|++.|+.++|+.|.+.
T Consensus 37 d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~edg~~L~~~ 116 (127)
T cd04819 37 DFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASVSGEDGLRLARV 116 (127)
T ss_pred HcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEEeHHHHHHHHHH
Confidence 4446679999999999999 889999999999999999998765432111 1235799999999999999999
Q ss_pred HhcCC
Q 038881 501 VNSTK 505 (794)
Q Consensus 501 ~~~~~ 505 (794)
++.+.
T Consensus 117 l~~g~ 121 (127)
T cd04819 117 AERND 121 (127)
T ss_pred HhcCC
Confidence 98754
No 65
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=8.2e-06 Score=98.04 Aligned_cols=95 Identities=19% Similarity=0.219 Sum_probs=59.4
Q ss_pred cccccCCCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCc-eEEEEccCCCC---CCC--CCCHHHHHHHHHHhCCc
Q 038881 269 TAKGGSPKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGV-DVLSVSLGGGP---SKF--FNDSTAIGSFHAVKHGM 342 (794)
Q Consensus 269 ~~~GvAP~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~-dVIN~SlG~~~---~~~--~~~~~~~a~~~a~~~Gv 342 (794)
...-+||.|+|..|-.-. .....+..|+++....-+ -++-.||+... ..+ .-+.+......|..+|+
T Consensus 287 ~s~A~AP~A~I~lvvap~-------~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGI 359 (1174)
T COG4934 287 WSHAMAPKANIDLVVAPN-------PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGI 359 (1174)
T ss_pred hhhccCccCceEEEEcCC-------CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccce
Confidence 346689999999987721 233344444444333211 34445666541 111 22345555567889999
Q ss_pred EEEEecCCCCCCCCC--------cCCCCCceEEecc
Q 038881 343 VVICSAGNSGPTDST--------VSNIAPWQITVGA 370 (794)
Q Consensus 343 ~vV~AAGN~G~~~~~--------~~~~ap~vitVgA 370 (794)
.+++|+|-+|....+ .+..+|++++||.
T Consensus 360 Ti~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 360 TIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred EEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 999999999865532 2347899999997
No 66
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=97.66 E-value=0.00017 Score=67.90 Aligned_cols=78 Identities=22% Similarity=0.135 Sum_probs=62.0
Q ss_pred CCCCccceEEEEecCCc------hhhhH-------HHHHHHcCceEEEEeccCC-------CCcccc-CCCCcccEEEEe
Q 038881 432 DPKKVKGKILVCLRGDN------ARIDK-------GQQALLAGAVGMVLANAQE-------NGNELL-ADPHLLPASHIN 490 (794)
Q Consensus 432 ~~~~~~gkivl~~~g~~------~~~~~-------~~~~~~~Ga~gvi~~n~~~-------~~~~~~-~~~~~~p~~~i~ 490 (794)
...+++|||||++++.| .|..| ...+.++||.++|++|... .+.... .....+|++.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 45689999999999999 88888 6999999999999998642 222111 223569999999
Q ss_pred ccchHHHHHHHhcCCCcEE
Q 038881 491 FTDGADLFRDVNSTKRPVG 509 (794)
Q Consensus 491 ~~~g~~l~~~~~~~~~~~~ 509 (794)
.+++..|.+.++.+.....
T Consensus 114 ~ed~~~L~r~l~~g~~v~~ 132 (134)
T cd04815 114 VEDADMLERLAARGKPIRV 132 (134)
T ss_pred hhcHHHHHHHHhCCCCeEE
Confidence 9999999999988765443
No 67
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=97.28 E-value=0.00054 Score=67.15 Aligned_cols=71 Identities=21% Similarity=0.306 Sum_probs=56.4
Q ss_pred CCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCC------------------Ccccc------------C---
Q 038881 433 PKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQEN------------------GNELL------------A--- 479 (794)
Q Consensus 433 ~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~------------------~~~~~------------~--- 479 (794)
..+++|||+|+++|.|.+.+|.++|+++||+|+|+|++... |..+. .
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 46899999999999999999999999999999999998421 00000 0
Q ss_pred -CCCcccEEEEeccchHHHHHHHhc
Q 038881 480 -DPHLLPASHINFTDGADLFRDVNS 503 (794)
Q Consensus 480 -~~~~~p~~~i~~~~g~~l~~~~~~ 503 (794)
....||+.-|+..++..|++.+.-
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCC
Confidence 123589999999999999998854
No 68
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=96.77 E-value=0.0033 Score=68.71 Aligned_cols=82 Identities=26% Similarity=0.402 Sum_probs=66.9
Q ss_pred CCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCC------CccccCCCCcccEEEEeccchHHHHHHHhcCCC
Q 038881 433 PKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQEN------GNELLADPHLLPASHINFTDGADLFRDVNSTKR 506 (794)
Q Consensus 433 ~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~------~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 506 (794)
...+++|++++.||.|.|.+|...++++||.++++.|+... ++........||+++|+.++++.+.....++.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 45689999999999999999999999999999999998542 222333457899999999999999987777776
Q ss_pred cEEEEEec
Q 038881 507 PVGYLTRA 514 (794)
Q Consensus 507 ~~~~i~~~ 514 (794)
.++.+...
T Consensus 171 V~~~lYaP 178 (541)
T KOG2442|consen 171 VELALYAP 178 (541)
T ss_pred EEEEEECC
Confidence 66655543
No 69
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=96.43 E-value=0.0045 Score=58.38 Aligned_cols=63 Identities=27% Similarity=0.249 Sum_probs=49.9
Q ss_pred ceeceEEccchhhcccchhhccccCCCCCCCCCccceEEEEecCCc------------------hhhhHHHHHHHcCceE
Q 038881 403 KLFPLISAADAKAANASTEVALLCEAGTLDPKKVKGKILVCLRGDN------------------ARIDKGQQALLAGAVG 464 (794)
Q Consensus 403 ~~~plv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~------------------~~~~~~~~~~~~Ga~g 464 (794)
...|+|+.+... ....|...++...|++|||||+.++.| .+..|...++++||.|
T Consensus 20 ~~aelVfvGyGi-------~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~g 92 (142)
T cd04814 20 KDAPLVFVGYGI-------KAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAG 92 (142)
T ss_pred cceeeEEecCCc-------CCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcE
Confidence 456666644321 234577788888999999999999877 4778999999999999
Q ss_pred EEEeccCC
Q 038881 465 MVLANAQE 472 (794)
Q Consensus 465 vi~~n~~~ 472 (794)
+|++++..
T Consensus 93 vIii~~~~ 100 (142)
T cd04814 93 VLIVHELA 100 (142)
T ss_pred EEEEeCCC
Confidence 99999865
No 70
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.30 E-value=0.0065 Score=56.92 Aligned_cols=49 Identities=33% Similarity=0.380 Sum_probs=42.8
Q ss_pred cccCCCCCCCCCccceEEEEecCCch------------hhhHHHHHHHcCceEEEEeccCC
Q 038881 424 LLCEAGTLDPKKVKGKILVCLRGDNA------------RIDKGQQALLAGAVGMVLANAQE 472 (794)
Q Consensus 424 ~~c~~~~~~~~~~~gkivl~~~g~~~------------~~~~~~~~~~~Ga~gvi~~n~~~ 472 (794)
..|...++...+++|||||+.++.|. +..|.+++.++||.|+|++++..
T Consensus 36 ~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 36 PELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred cCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 46777788888999999999998863 67899999999999999999854
No 71
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=96.12 E-value=0.2 Score=44.55 Aligned_cols=81 Identities=23% Similarity=0.226 Sum_probs=62.2
Q ss_pred ceEEEEEEEEecCC-CceEEEEEeCCCCcEEEEEccEEEEecCCcEEEEEEEEEEcccccCCCCeEEEEEEEEeCCccEE
Q 038881 707 GSIIVSRTVRNVGS-PGTYIARVRNPKGISVSVEPRSLKFLRVGEEKNFKVTIKVRKVRAATKDYVFGDLVWADDKQHQV 785 (794)
Q Consensus 707 ~~~~~~~tv~n~~~-~~ty~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~~~G~~~~~~~~~~~v 785 (794)
...+.+++++|.+. ...|++.........++++|..-.+ ++|++.++.|++.... ..+ .+.+.|.++- .+..+
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~---~~g-~~~~~l~i~~-e~~~~ 93 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTK---PLG-DYEGSLVITT-EGGSF 93 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCC---CCc-eEEEEEEEEE-CCeEE
Confidence 56778889999999 9999998754335567788877667 8999999999999643 333 4588888876 45689
Q ss_pred EeEEEEEe
Q 038881 786 RSPIVVNP 793 (794)
Q Consensus 786 ~~P~~~~~ 793 (794)
.+|+-++.
T Consensus 94 ~i~v~a~~ 101 (102)
T PF14874_consen 94 EIPVKAEV 101 (102)
T ss_pred EEEEEEEE
Confidence 99987764
No 72
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.10 E-value=0.0098 Score=56.78 Aligned_cols=50 Identities=26% Similarity=0.262 Sum_probs=42.5
Q ss_pred ccccCCCCCCCCCccceEEEEecCC------------------chhhhHHHHHHHcCceEEEEeccCC
Q 038881 423 ALLCEAGTLDPKKVKGKILVCLRGD------------------NARIDKGQQALLAGAVGMVLANAQE 472 (794)
Q Consensus 423 ~~~c~~~~~~~~~~~gkivl~~~g~------------------~~~~~~~~~~~~~Ga~gvi~~n~~~ 472 (794)
...|...++...+++|||||+.++. |.+..|..++.++||.|||+|++..
T Consensus 33 ~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~ 100 (151)
T cd04822 33 APELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPN 100 (151)
T ss_pred ccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCc
Confidence 3457777777889999999998763 6678999999999999999999865
No 73
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=95.65 E-value=0.015 Score=54.74 Aligned_cols=39 Identities=21% Similarity=0.079 Sum_probs=36.8
Q ss_pred CCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCC
Q 038881 434 KKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQE 472 (794)
Q Consensus 434 ~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~ 472 (794)
.+++|||+|++.|...+..|.++|++.||.|+|+|.+..
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 679999999999999999999999999999999999854
No 74
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=95.63 E-value=0.019 Score=58.30 Aligned_cols=40 Identities=38% Similarity=0.421 Sum_probs=37.1
Q ss_pred CCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCC
Q 038881 433 PKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQE 472 (794)
Q Consensus 433 ~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~ 472 (794)
..+++|||||+++|.+.+.+|..+|+++||+|+|+|++..
T Consensus 67 gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 67 GIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred CCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCch
Confidence 5689999999999999889999999999999999999864
No 75
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.25 E-value=0.067 Score=45.11 Aligned_cols=56 Identities=29% Similarity=0.371 Sum_probs=37.8
Q ss_pred ceEEEEEEEEecCC--CceEEEEEeCCCCcEEEEEccEEEEecCCcEEEEEEEEEEcc
Q 038881 707 GSIIVSRTVRNVGS--PGTYIARVRNPKGISVSVEPRSLKFLRVGEEKNFKVTIKVRK 762 (794)
Q Consensus 707 ~~~~~~~tv~n~~~--~~ty~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~ 762 (794)
...+++++|+|.|. ....++++..|.|-.+...|.++.--++|++++++++|++..
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~ 62 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPA 62 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-T
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCC
Confidence 57889999999997 466889999999988888888775448999999999999975
No 76
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=95.01 E-value=0.033 Score=51.92 Aligned_cols=90 Identities=16% Similarity=0.165 Sum_probs=66.7
Q ss_pred hccccCCCCCCCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCccc------c----CCCCcccEEEEec
Q 038881 422 VALLCEAGTLDPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNEL------L----ADPHLLPASHINF 491 (794)
Q Consensus 422 ~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~------~----~~~~~~p~~~i~~ 491 (794)
....|.+.. +.-+..|.|.|++||+|+|..|..+++++||..+|+..+.....+. . .+...+|++++-.
T Consensus 73 Pp~aC~elr-N~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fllg 151 (193)
T KOG3920|consen 73 PPHACEELR-NEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLLG 151 (193)
T ss_pred ChhHHHHHh-hcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEec
Confidence 456776542 2446788999999999999999999999999999998876543221 2 2346899999999
Q ss_pred cchHHHHHHHhcCCCcEEEEE
Q 038881 492 TDGADLFRDVNSTKRPVGYLT 512 (794)
Q Consensus 492 ~~g~~l~~~~~~~~~~~~~i~ 512 (794)
.+|..+..-++.....-+.|.
T Consensus 152 ~~Gy~ir~sL~r~~r~ha~i~ 172 (193)
T KOG3920|consen 152 VTGYYIRVSLKRYFRDHAKID 172 (193)
T ss_pred cceEEEehhHHHhCCccEEEe
Confidence 999877776665554444443
No 77
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=0.11 Score=55.99 Aligned_cols=81 Identities=16% Similarity=0.082 Sum_probs=63.5
Q ss_pred cccCCCCC---CCCCccceEEEEecCCchhhhHHHHHHHcCceEEEEeccCCCCcccc----CCCCcccEEEEeccchHH
Q 038881 424 LLCEAGTL---DPKKVKGKILVCLRGDNARIDKGQQALLAGAVGMVLANAQENGNELL----ADPHLLPASHINFTDGAD 496 (794)
Q Consensus 424 ~~c~~~~~---~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~gvi~~n~~~~~~~~~----~~~~~~p~~~i~~~~g~~ 496 (794)
.+|++... ........++|+.||+|+|.+|..+|+++|..++|+||+........ .....+++++++...|+.
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~ 142 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGEL 142 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHH
Confidence 45665432 13456788999999999999999999999999999999877553322 234678999999999999
Q ss_pred HHHHHhcC
Q 038881 497 LFRDVNST 504 (794)
Q Consensus 497 l~~~~~~~ 504 (794)
|+.|....
T Consensus 143 l~~~~~~~ 150 (348)
T KOG4628|consen 143 LSSYAGRT 150 (348)
T ss_pred HHHhhccc
Confidence 99976443
No 78
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=91.15 E-value=1.7 Score=39.66 Aligned_cols=55 Identities=16% Similarity=0.199 Sum_probs=39.5
Q ss_pred eEEEEEEEEecCC-CceEEEEEeCCCCcEEEEEccEEEEecCCcEEEEEEEEEEccc
Q 038881 708 SIIVSRTVRNVGS-PGTYIARVRNPKGISVSVEPRSLKFLRVGEEKNFKVTIKVRKV 763 (794)
Q Consensus 708 ~~~~~~tv~n~~~-~~ty~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~~ 763 (794)
.-.+++++.|.+. +.+|+++++.++|+++......+++ ++|++.++.|.+.+...
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~ 87 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPPD 87 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-GG
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECHH
Confidence 3478889999999 9999999998889999654588889 79999999999999873
No 79
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=87.03 E-value=0.99 Score=43.52 Aligned_cols=43 Identities=30% Similarity=0.349 Sum_probs=34.5
Q ss_pred CCCCCCccceEEEEecCCch-------------------hhhHHHHHHHcCceEEEEeccCC
Q 038881 430 TLDPKKVKGKILVCLRGDNA-------------------RIDKGQQALLAGAVGMVLANAQE 472 (794)
Q Consensus 430 ~~~~~~~~gkivl~~~g~~~-------------------~~~~~~~~~~~Ga~gvi~~n~~~ 472 (794)
++...|++|||||+.++.-. +..|.+.+.+.||.|+|++.+..
T Consensus 42 Dy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~ 103 (157)
T cd04821 42 DYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE 103 (157)
T ss_pred cccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence 55678999999999875432 33599999999999999997643
No 80
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=85.55 E-value=5.4 Score=36.72 Aligned_cols=70 Identities=19% Similarity=0.282 Sum_probs=50.5
Q ss_pred CceEEEEEEEEecCC-CceEEEEEeC----CCC--------------------cEEEEEccEEEEecCCcEEEEEEEEEE
Q 038881 706 SGSIIVSRTVRNVGS-PGTYIARVRN----PKG--------------------ISVSVEPRSLKFLRVGEEKNFKVTIKV 760 (794)
Q Consensus 706 ~~~~~~~~tv~n~~~-~~ty~~~~~~----~~g--------------------~~v~~~p~~~~~~~~~~~~~~~vt~~~ 760 (794)
+...+++++|+|.++ ..+|.+++.. ..| --+++ |..+++ +++++++++++++.
T Consensus 26 ~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~sk~V~~~i~~ 103 (121)
T PF06030_consen 26 GQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNESKTVTFTIKM 103 (121)
T ss_pred CCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCCEEEEEEEEEc
Confidence 367899999999998 9999988632 111 01222 445888 79999999999999
Q ss_pred cccccCCCCeEEEEEEEEe
Q 038881 761 RKVRAATKDYVFGDLVWAD 779 (794)
Q Consensus 761 ~~~~~~~~~~~~G~~~~~~ 779 (794)
.. ..-.+-+-|.|.++.
T Consensus 104 P~--~~f~G~ilGGi~~~e 120 (121)
T PF06030_consen 104 PK--KAFDGIILGGIYFSE 120 (121)
T ss_pred CC--CCcCCEEEeeEEEEe
Confidence 77 445566778787764
No 81
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=84.48 E-value=15 Score=33.56 Aligned_cols=68 Identities=19% Similarity=0.162 Sum_probs=45.9
Q ss_pred ceEEEEEEEEecCC-CceEEEEEeC---CC----CcEEEEEccEEEEecCCcEEEEEEEEEEcccccCCCCeEEEEEEEE
Q 038881 707 GSIIVSRTVRNVGS-PGTYIARVRN---PK----GISVSVEPRSLKFLRVGEEKNFKVTIKVRKVRAATKDYVFGDLVWA 778 (794)
Q Consensus 707 ~~~~~~~tv~n~~~-~~ty~~~~~~---~~----g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~~~G~~~~~ 778 (794)
+..+.+++|+|.++ +..+.+.+.. .. .-.+.++|..+++ ++|++++|.| +.... .+.+.-..=+|.++
T Consensus 14 ~~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~~--~~~~~E~~yrl~~~ 89 (122)
T PF00345_consen 14 SQRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGSK--LPIDRESLYRLSFR 89 (122)
T ss_dssp TSSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECSG--S-SSS-EEEEEEEE
T ss_pred CCCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecCC--CCCCceEEEEEEEE
Confidence 34577899999998 6677777654 11 1257899999999 7999999999 76433 23443334455554
No 82
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=81.58 E-value=0.99 Score=53.78 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=22.5
Q ss_pred ccCCCCceEEEEecCCCCCCCCCCc
Q 038881 161 KARYGEDTIIGNLDTGVWPESKSFS 185 (794)
Q Consensus 161 ~g~~G~GV~VaVIDTGId~~Hp~f~ 185 (794)
..|.|+||+|||+|||||+.-|-+.
T Consensus 76 PeYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 76 PEYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred cCCCCCceEEEEeecCCCCCCCCce
Confidence 3679999999999999999988875
No 83
>COG1470 Predicted membrane protein [Function unknown]
Probab=79.78 E-value=11 Score=42.27 Aligned_cols=71 Identities=23% Similarity=0.308 Sum_probs=56.7
Q ss_pred ceEEEEEEEEecCC--CceEEEEEeCCCCcEEEEEccEEEEecCCcEEEEEEEEEEcccccCCCCeEEEEEEEEe
Q 038881 707 GSIIVSRTVRNVGS--PGTYIARVRNPKGISVSVEPRSLKFLRVGEEKNFKVTIKVRKVRAATKDYVFGDLVWAD 779 (794)
Q Consensus 707 ~~~~~~~tv~n~~~--~~ty~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~~~G~~~~~~ 779 (794)
...+....+.|.|+ -...++++..|.|-++.|+|.++-.-++|++.++++|++++.. +.++.| +=+|.-+.
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~-a~aGdY-~i~i~~ks 469 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPED-AGAGDY-RITITAKS 469 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCC-CCCCcE-EEEEEEee
Confidence 56788899999998 4678899999999999999998765589999999999999864 566666 33444443
No 84
>COG1470 Predicted membrane protein [Function unknown]
Probab=74.03 E-value=34 Score=38.47 Aligned_cols=62 Identities=21% Similarity=0.349 Sum_probs=48.0
Q ss_pred ceEEEEEEEEecCC-CceEEEEEe-CCCCcEEEEEcc-----EEEEecCCcEEEEEEEEEEcccccCCCCe
Q 038881 707 GSIIVSRTVRNVGS-PGTYIARVR-NPKGISVSVEPR-----SLKFLRVGEEKNFKVTIKVRKVRAATKDY 770 (794)
Q Consensus 707 ~~~~~~~tv~n~~~-~~ty~~~~~-~~~g~~v~~~p~-----~~~~~~~~~~~~~~vt~~~~~~~~~~~~~ 770 (794)
.+..|++++.|.|. ..+|.+++. .|.|-+..+.-. ++.+ .+||+++|+|.+.+... +..+.|
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps~n-a~pG~Y 352 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPSLN-ATPGTY 352 (513)
T ss_pred CceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecCCC-CCCCce
Confidence 46689999999999 999999998 787666554433 3455 78999999999999764 455555
No 85
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=68.38 E-value=18 Score=41.06 Aligned_cols=54 Identities=17% Similarity=0.246 Sum_probs=46.5
Q ss_pred eEEEEEEEEecCC-CceEEEEEeCCCCcEEEEEccEEEEecCCcEEEEEEEEEEcc
Q 038881 708 SIIVSRTVRNVGS-PGTYIARVRNPKGISVSVEPRSLKFLRVGEEKNFKVTIKVRK 762 (794)
Q Consensus 708 ~~~~~~tv~n~~~-~~ty~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~ 762 (794)
.-.+++++.|.+. +.+|+++++..++.++...+..+++ ++|++.++.|.+....
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRTPP 401 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEech
Confidence 4577888999998 9999999998889888876458888 7999999999998875
No 86
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=67.45 E-value=50 Score=31.12 Aligned_cols=68 Identities=16% Similarity=0.285 Sum_probs=52.8
Q ss_pred eEEEEEEEEecCC--CceEEEEEeCCCCcEEEEEccEEEEecCCcEEEEEEEEEEcccccCCCCeEEEEEEEEe
Q 038881 708 SIIVSRTVRNVGS--PGTYIARVRNPKGISVSVEPRSLKFLRVGEEKNFKVTIKVRKVRAATKDYVFGDLVWAD 779 (794)
Q Consensus 708 ~~~~~~tv~n~~~--~~ty~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~~~G~~~~~~ 779 (794)
...+.+.+-|-.+ -.-.+++.....+.++.-.|..+++ .|++.++++.++.+.+ ...+..||.|++..
T Consensus 70 DIvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL-~P~~~~~i~~~iKVsS---tetGvIfG~I~Yd~ 139 (140)
T PF07718_consen 70 DIVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITL-APHGFARIKATIKVSS---TETGVIFGNIVYDG 139 (140)
T ss_pred eEEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceee-CCCcEEEEEEEEEEEe---ccCCEEEEEEEEec
Confidence 4556666777665 3455666666678899889999999 8999999999999976 56778999999854
No 87
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=63.01 E-value=31 Score=30.51 Aligned_cols=53 Identities=19% Similarity=0.229 Sum_probs=39.9
Q ss_pred ceEEEEEEEEecCC-CceEEEEEeCCCCcEEEEEccEEEEecCCcEEEEEEEEEEcc
Q 038881 707 GSIIVSRTVRNVGS-PGTYIARVRNPKGISVSVEPRSLKFLRVGEEKNFKVTIKVRK 762 (794)
Q Consensus 707 ~~~~~~~tv~n~~~-~~ty~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~ 762 (794)
......++|+|.++ ..-|++....|.. ..|.|..-.+ .++++.++.|++....
T Consensus 18 ~~~~~~l~l~N~s~~~i~fKiktt~~~~--y~v~P~~G~i-~p~~~~~i~I~~~~~~ 71 (109)
T PF00635_consen 18 KQQSCELTLTNPSDKPIAFKIKTTNPNR--YRVKPSYGII-EPGESVEITITFQPFD 71 (109)
T ss_dssp S-EEEEEEEEE-SSSEEEEEEEES-TTT--EEEESSEEEE--TTEEEEEEEEE-SSS
T ss_pred ceEEEEEEEECCCCCcEEEEEEcCCCce--EEecCCCEEE-CCCCEEEEEEEEEecc
Confidence 45778889999999 8999998887755 5577998777 8999999999998854
No 88
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=61.47 E-value=33 Score=29.57 Aligned_cols=52 Identities=21% Similarity=0.290 Sum_probs=33.3
Q ss_pred CceEEEEEEEEecCC--CceEEEEEeCCCCcEEEEEccEE-EEecCCcEEEEEEEEEEc
Q 038881 706 SGSIIVSRTVRNVGS--PGTYIARVRNPKGISVSVEPRSL-KFLRVGEEKNFKVTIKVR 761 (794)
Q Consensus 706 ~~~~~~~~tv~n~~~--~~ty~~~~~~~~g~~v~~~p~~~-~~~~~~~~~~~~vt~~~~ 761 (794)
+...+++++|+|.|. ...+.+.+... |..+ .-..+ .+ ++|++.++++++...
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~--~~~~i~~L-~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLD-GNSV--STVTIPSL-APGESETVTFTWTPP 72 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEET-TEEE--EEEEESEB--TTEEEEEEEEEE-S
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEEC-Ccee--ccEEECCc-CCCcEEEEEEEEEeC
Confidence 367899999999998 56677766433 3333 22223 45 788999888888874
No 89
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=51.68 E-value=92 Score=27.58 Aligned_cols=55 Identities=25% Similarity=0.334 Sum_probs=37.1
Q ss_pred CceEEEEEEEEecCC-C-ceEEEE-----EeCCCCcE---EEEEccEEEEecCCcEEEEEEEEEEcc
Q 038881 706 SGSIIVSRTVRNVGS-P-GTYIAR-----VRNPKGIS---VSVEPRSLKFLRVGEEKNFKVTIKVRK 762 (794)
Q Consensus 706 ~~~~~~~~tv~n~~~-~-~ty~~~-----~~~~~g~~---v~~~p~~~~~~~~~~~~~~~vt~~~~~ 762 (794)
+...++.++++|..+ . .+-++. ++.+ |+. +......+++ +++++.++++++.+..
T Consensus 14 G~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~yt-G~~~~~~~~~~~~~~l-~p~~~~~~~~~i~p~~ 78 (107)
T PF00927_consen 14 GQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYT-GLTRDQFKKEKFEVTL-KPGETKSVEVTITPSQ 78 (107)
T ss_dssp TSEEEEEEEEEE-SSS-EECEEEEEEEEEEECT-TTEEEEEEEEEEEEEE--TTEEEEEEEEE-HHS
T ss_pred CCCEEEEEEEEeCCcCccccceeEEEEEEEEEC-CcccccEeEEEcceee-CCCCEEEEEEEEEcee
Confidence 467899999999997 5 443332 3333 664 5666777788 7999999999998866
No 90
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=48.72 E-value=43 Score=41.13 Aligned_cols=53 Identities=21% Similarity=0.367 Sum_probs=36.1
Q ss_pred ceEEEEEEEEecCC---CceEEEEEeCCCCcEEEEEc-------cEEEEecCCcEEEEEEEEEEcc
Q 038881 707 GSIIVSRTVRNVGS---PGTYIARVRNPKGISVSVEP-------RSLKFLRVGEEKNFKVTIKVRK 762 (794)
Q Consensus 707 ~~~~~~~tv~n~~~---~~ty~~~~~~~~g~~v~~~p-------~~~~~~~~~~~~~~~vt~~~~~ 762 (794)
+..+++++|+|+|+ .++-.+-+..|.+. +. .| ..+.+ ++||+++++++++...
T Consensus 667 ~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~~-~~-~P~k~L~gF~Kv~L-~pGes~~V~~~l~~~~ 729 (765)
T PRK15098 667 GKVTASVTVTNTGKREGATVVQLYLQDVTAS-MS-RPVKELKGFEKIML-KPGETQTVSFPIDIEA 729 (765)
T ss_pred CeEEEEEEEEECCCCCccEEEEEeccCCCCC-CC-CHHHhccCceeEeE-CCCCeEEEEEeecHHH
Confidence 56889999999998 45555555555321 11 12 23456 8999999999998764
No 91
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=47.79 E-value=1.3e+02 Score=29.72 Aligned_cols=67 Identities=21% Similarity=0.342 Sum_probs=42.8
Q ss_pred ceEEEEEEEEecCCCceEEEEEeC----CCCcEEEEEccE--EEEecCCcEEEEEEEEEEcccccCCCCeEEEEEEE
Q 038881 707 GSIIVSRTVRNVGSPGTYIARVRN----PKGISVSVEPRS--LKFLRVGEEKNFKVTIKVRKVRAATKDYVFGDLVW 777 (794)
Q Consensus 707 ~~~~~~~tv~n~~~~~ty~~~~~~----~~g~~v~~~p~~--~~~~~~~~~~~~~vt~~~~~~~~~~~~~~~G~~~~ 777 (794)
...++++++.|+|+..-|.+++.. +..+++.--..+ +.-.++|++.+.++++++.. .+.+.++..+.
T Consensus 38 ~~v~V~~~iyN~G~~~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~~----~G~f~~~~a~V 110 (181)
T PF05753_consen 38 EDVTVTYTIYNVGSSAAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPKK----SGYFNFTPAVV 110 (181)
T ss_pred cEEEEEEEEEECCCCeEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeeee----eEEEEccCEEE
Confidence 678999999999997778888765 234443211111 22227899888888888743 45555554443
No 92
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=44.56 E-value=54 Score=27.90 Aligned_cols=53 Identities=19% Similarity=0.257 Sum_probs=24.5
Q ss_pred EEEEEEEEecCC-Cc--------eEEEEEeCCC---------CcEEEEEccEEEEecCCcEEEEEEEEEEcc
Q 038881 709 IIVSRTVRNVGS-PG--------TYIARVRNPK---------GISVSVEPRSLKFLRVGEEKNFKVTIKVRK 762 (794)
Q Consensus 709 ~~~~~tv~n~~~-~~--------ty~~~~~~~~---------g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~ 762 (794)
..++++|+|.++ +. .|.+.+..+. |--++-.-...++ ++||+.+|..+++...
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l-~pGe~~~~~~~~~~~~ 72 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETL-EPGESLTYEETWDLKD 72 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE--TT-EEEEEEEESS--
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEE-CCCCEEEEEEEECCCC
Confidence 356667777764 32 3334444333 3334444445667 8999999999887654
No 93
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=42.71 E-value=72 Score=23.57 Aligned_cols=43 Identities=26% Similarity=0.273 Sum_probs=23.4
Q ss_pred EEEEecCC-CceEEEEEeCCCCcEEEEEccEEEEecCCcEEEEEEEE
Q 038881 713 RTVRNVGS-PGTYIARVRNPKGISVSVEPRSLKFLRVGEEKNFKVTI 758 (794)
Q Consensus 713 ~tv~n~~~-~~ty~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~ 758 (794)
++++|.|+ ..... .+...=|= ..++...-.+ ++||+..+.|++
T Consensus 2 F~~~N~g~~~L~I~-~v~tsCgC-t~~~~~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVIT-DVQTSCGC-TTAEYSKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEE-EeeEccCC-EEeeCCcceE-CCCCEEEEEEEC
Confidence 57899987 33322 22222222 2223333335 799999988874
No 94
>PLN03080 Probable beta-xylosidase; Provisional
Probab=40.31 E-value=58 Score=40.03 Aligned_cols=80 Identities=19% Similarity=0.227 Sum_probs=44.4
Q ss_pred eEEEEEEEEecCC-C--ceEEEEEeCCCCc-----EEEEEccEEEEecCCcEEEEEEEEEE-cc-c-ccCCCCeE--EEE
Q 038881 708 SIIVSRTVRNVGS-P--GTYIARVRNPKGI-----SVSVEPRSLKFLRVGEEKNFKVTIKV-RK-V-RAATKDYV--FGD 774 (794)
Q Consensus 708 ~~~~~~tv~n~~~-~--~ty~~~~~~~~g~-----~v~~~p~~~~~~~~~~~~~~~vt~~~-~~-~-~~~~~~~~--~G~ 774 (794)
..+++++|||+|+ . ++-.+-+..|... +--+--..+.+ ++||+++++++++. .. + -...+.|. -|.
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L-~~Ges~~V~~~l~~~~~ls~~d~~~~~~v~~G~ 763 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHT-ASGRSTETEIVVDPCKHLSVANEEGKRVLPLGD 763 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEee-CCCCEEEEEEEeCchHHceEEcCCCcEEEeCcc
Confidence 4789999999998 4 4444445444321 11111224456 78999999999986 32 0 01123332 343
Q ss_pred EE-EEeCCccEEEeE
Q 038881 775 LV-WADDKQHQVRSP 788 (794)
Q Consensus 775 ~~-~~~~~~~~v~~P 788 (794)
.. +.++..|.|+++
T Consensus 764 y~l~vG~~~~~~~~~ 778 (779)
T PLN03080 764 HVLMLGDLEHSLSIE 778 (779)
T ss_pred EEEEEeCCccceEEe
Confidence 33 334346677664
No 95
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=39.50 E-value=1.3e+02 Score=25.19 Aligned_cols=45 Identities=20% Similarity=0.370 Sum_probs=31.5
Q ss_pred EEEEEccEEEEecCCcEEEEEEEEEEcccccCCCCeEEEEEEEEeCCccEEE
Q 038881 735 SVSVEPRSLKFLRVGEEKNFKVTIKVRKVRAATKDYVFGDLVWADDKQHQVR 786 (794)
Q Consensus 735 ~v~~~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~~~G~~~~~~~~~~~v~ 786 (794)
.+.+.|..+++ ..|+++.|++++.... ... ...+.|+.++.....
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~~~----~~~--~~~v~w~Ssn~~vat 48 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTPSS----AKV--TGKVTWTSSNPSVAT 48 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEECCC----CCc--cceEEEEECCCcEEE
Confidence 57889999999 6899999999976543 111 556888874444433
No 96
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=36.10 E-value=1.1e+02 Score=26.13 Aligned_cols=47 Identities=15% Similarity=0.111 Sum_probs=31.4
Q ss_pred ceEEEEEEEEecCC-CceEEEEEeCCCCcEEEEEccEEEEecCCcEEEEEEEE
Q 038881 707 GSIIVSRTVRNVGS-PGTYIARVRNPKGISVSVEPRSLKFLRVGEEKNFKVTI 758 (794)
Q Consensus 707 ~~~~~~~tv~n~~~-~~ty~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~ 758 (794)
....+.++++|.|. ..++++.-..- -.-.|.++++ ++|++.++...+
T Consensus 18 ~~g~l~l~l~N~g~~~~~~~v~~~~y----~~~~~~~~~v-~ag~~~~~~w~l 65 (89)
T PF05506_consen 18 ATGNLRLTLSNPGSAAVTFTVYDNAY----GGGGPWTYTV-AAGQTVSLTWPL 65 (89)
T ss_pred CCCEEEEEEEeCCCCcEEEEEEeCCc----CCCCCEEEEE-CCCCEEEEEEee
Confidence 34588899999987 77777765211 1123556777 788887777766
No 97
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=32.56 E-value=43 Score=24.27 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=19.2
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhcC
Q 038881 592 VGLLKTLHPEWSPAAIKSAIMTTA 615 (794)
Q Consensus 592 aALl~q~~p~lsp~~ik~~L~~TA 615 (794)
+--|++.+|++++..|+..|...-
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcC
Confidence 346789999999999999997653
No 98
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=32.50 E-value=21 Score=16.47 Aligned_cols=6 Identities=67% Similarity=0.867 Sum_probs=4.2
Q ss_pred cccCCC
Q 038881 528 AFSSKG 533 (794)
Q Consensus 528 ~fSS~G 533 (794)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 477776
No 99
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=30.82 E-value=1.7e+02 Score=22.42 Aligned_cols=38 Identities=24% Similarity=0.327 Sum_probs=25.7
Q ss_pred CceEEEEEEEEecCC-C-ceEEEEEeCCCCcEEEEEccEEEE
Q 038881 706 SGSIIVSRTVRNVGS-P-GTYIARVRNPKGISVSVEPRSLKF 745 (794)
Q Consensus 706 ~~~~~~~~tv~n~~~-~-~ty~~~~~~~~g~~v~~~p~~~~~ 745 (794)
++..+++++++|.|. . ....++-..|.|..+ .|.++++
T Consensus 11 Gd~v~Yti~v~N~g~~~a~~v~v~D~lP~g~~~--v~~S~~~ 50 (53)
T TIGR01451 11 GDTITYTITVTNNGNVPATNVVVTDILPSGTTF--VSNSVTV 50 (53)
T ss_pred CCEEEEEEEEEECCCCceEeEEEEEcCCCCCEE--EeCcEEE
Confidence 478899999999998 3 334444456767554 4666655
No 100
>PF03160 Calx-beta: Calx-beta domain; InterPro: IPR003644 The calx-beta motif is present as a tandem repeat in the cytoplasmic domains of Calx Na-Ca exchangers, which are used to expel calcium from cells. This motif overlaps domains used for calcium binding and regulation. The calx-beta motif is also present in the cytoplasmic tail of mammalian integrin-beta4, which mediates the bi-directional transfer of signals across the plasma membrane, as well as in some cyanobacterial proteins. This motif contains a series of beta-strands and turns that form a self-contained beta-sheet [, ].; GO: 0007154 cell communication, 0016021 integral to membrane; PDB: 3H6A_B 3FSO_A 3FQ4_B 2DPK_A 2QVM_A 3GIN_B 2QVK_A 2FWU_A 2FWS_A 3E9U_A ....
Probab=30.55 E-value=3.5e+02 Score=23.28 Aligned_cols=67 Identities=25% Similarity=0.309 Sum_probs=34.4
Q ss_pred CCCCeEEeecCCceEEEEEEEEecCC-CceEEEEEe-----CCCCcEEEEEccEEEEecCCcEEEEEEEEEEcc
Q 038881 695 FNYPSITVPKLSGSIIVSRTVRNVGS-PGTYIARVR-----NPKGISVSVEPRSLKFLRVGEEKNFKVTIKVRK 762 (794)
Q Consensus 695 ~n~ps~~~~~~~~~~~~~~tv~n~~~-~~ty~~~~~-----~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~ 762 (794)
+.-+++.+.+..+...+.+++++ +. .....+.+. +-.|.+....+.+++|.+...++++.|++-.+.
T Consensus 15 f~~~~~~v~E~~~~~~v~V~~~~-~~~~~~v~v~~~~~~gtA~~~~Dy~~~~~~v~f~~g~t~~~i~i~i~dD~ 87 (100)
T PF03160_consen 15 FSSPSYTVSEGDGTVTVTVTRSG-GSLDGPVTVNYSTVDGTATAGSDYSPTSGTVTFPPGETSKTINITIIDDD 87 (100)
T ss_dssp ESSSEEEEETTSSEEEEEEEEES-S-TSSEEEEEEEEEESSSETTTSBE--EEEEEE-TT-SEEEEEEEB---S
T ss_pred EeCCEEEEEeCCCEEEEEEEEcc-cCCCcceEEEEEEeCCccccccccccceeEEEECCCCeEEEEEEEEeCCC
Confidence 34456677665555566665554 32 222222221 234777788888999954444677777765544
No 101
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=28.41 E-value=78 Score=33.84 Aligned_cols=80 Identities=16% Similarity=0.219 Sum_probs=50.8
Q ss_pred ccccCCCceEEEEEeecCCCCCC---CCCh----------HHHHHHHHHhHhCCceEEEEccCCCC------------CC
Q 038881 270 AKGGSPKARVAAYKVCWPPVTGN---ECYD----------ADILAAFDMAIHDGVDVLSVSLGGGP------------SK 324 (794)
Q Consensus 270 ~~GvAP~A~L~~~kv~~~~~~G~---~~~~----------~~i~~ai~~a~~~g~dVIN~SlG~~~------------~~ 324 (794)
++-+||-++|-+-..+|...++. ++.. +.-+.-+++++++|.+||+ |.|... +.
T Consensus 137 ~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Vis-s~GaaaksDPTrv~v~Dis~ 215 (430)
T KOG2018|consen 137 FSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVIS-STGAAAKSDPTRVNVADISE 215 (430)
T ss_pred HHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEe-ccCccccCCCceeehhhccc
Confidence 46789999998887777542210 1111 1223456778899999996 666541 23
Q ss_pred CCCCHHHHHHHH-HH----hCCcEEEEecCC
Q 038881 325 FFNDSTAIGSFH-AV----KHGMVVICSAGN 350 (794)
Q Consensus 325 ~~~~~~~~a~~~-a~----~~Gv~vV~AAGN 350 (794)
...||+++...+ .+ ..||.||+|+--
T Consensus 216 t~~DPlsR~vRrrLrk~GI~~GIpVVFS~Ek 246 (430)
T KOG2018|consen 216 TEEDPLSRSVRRRLRKRGIEGGIPVVFSLEK 246 (430)
T ss_pred cccCcHHHHHHHHHHHhccccCCceEEecCC
Confidence 456888877765 33 347889998643
No 102
>PRK15019 CsdA-binding activator; Provisional
Probab=25.28 E-value=64 Score=30.79 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=27.7
Q ss_pred eeeccccchhhHHHHHHHHHHhhCCCCCHHHHHH
Q 038881 576 NALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKS 609 (794)
Q Consensus 576 ~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~ 609 (794)
..+.|.| =|+.|-|.+|||.+.+-..+|++|.+
T Consensus 77 ~~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 77 MHFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3444666 67999999999999999999999876
No 103
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=24.58 E-value=58 Score=22.44 Aligned_cols=13 Identities=31% Similarity=0.772 Sum_probs=10.8
Q ss_pred chhhHHHHHHHHH
Q 038881 583 MSCPHVSGIVGLL 595 (794)
Q Consensus 583 mAaP~VAG~aALl 595 (794)
.|||.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998754
No 104
>smart00237 Calx_beta Domains in Na-Ca exchangers and integrin-beta4. Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)
Probab=24.22 E-value=4.5e+02 Score=22.41 Aligned_cols=61 Identities=30% Similarity=0.372 Sum_probs=35.1
Q ss_pred CeEEeecCCceEEEEEEEEecCC-CceEEEEEe-----CCCCcEEEEEccEEEEecCCc-EEEEEEEEEEc
Q 038881 698 PSITVPKLSGSIIVSRTVRNVGS-PGTYIARVR-----NPKGISVSVEPRSLKFLRVGE-EKNFKVTIKVR 761 (794)
Q Consensus 698 ps~~~~~~~~~~~~~~tv~n~~~-~~ty~~~~~-----~~~g~~v~~~p~~~~~~~~~~-~~~~~vt~~~~ 761 (794)
+++.+.+..+ +++++|.-.++ ....++.+. +-+|.+......+|+| ++|+ +++++|.+.-+
T Consensus 9 ~~~~V~E~~g--~~~v~V~R~g~~~~~~~V~~~t~~gtA~~g~Dy~~~~g~l~F-~~ge~~k~i~i~i~dD 76 (90)
T smart00237 9 PVYTVSESDG--EVEVCVVRTGGARGTVVVPYRTEDGTATAGSDYEPVEGTLTF-PPGETEKCIRIKIIDD 76 (90)
T ss_pred CeEEEEECCe--EEEEEEEecCCCCcEEEEEEEEcCCcCCCCCCccccceEEEE-CCCCEEEEEEEEEeCC
Confidence 4666666443 45556655555 444444443 3346666666888999 5665 45555555443
No 105
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=24.08 E-value=70 Score=30.17 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=28.3
Q ss_pred eeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHH
Q 038881 576 NALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSA 610 (794)
Q Consensus 576 ~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~ 610 (794)
..+.|.| =|+.|-|++|||.+.+-..+|++|.+.
T Consensus 72 ~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 72 LHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 3455666 589999999999999999999998743
No 106
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=22.92 E-value=1.8e+02 Score=23.78 Aligned_cols=31 Identities=23% Similarity=0.431 Sum_probs=21.5
Q ss_pred CceEEEEEEEEecCC-C-ceEEEEEeCCCCcEE
Q 038881 706 SGSIIVSRTVRNVGS-P-GTYIARVRNPKGISV 736 (794)
Q Consensus 706 ~~~~~~~~tv~n~~~-~-~ty~~~~~~~~g~~v 736 (794)
++..+++++|+|.|+ . .-..+.-..|.|+.+
T Consensus 40 Gd~v~ytitvtN~G~~~a~nv~v~D~lp~g~~~ 72 (76)
T PF01345_consen 40 GDTVTYTITVTNTGPAPATNVVVTDTLPAGLTF 72 (76)
T ss_pred CCEEEEEEEEEECCCCeeEeEEEEEcCCCCCEE
Confidence 467899999999998 3 334444445667654
No 107
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=22.12 E-value=3.7e+02 Score=24.15 Aligned_cols=41 Identities=17% Similarity=0.332 Sum_probs=33.4
Q ss_pred CCceEEEEEeecCCCCCCCCChHHHHHHHHHhHhCCceEEEEccCCC
Q 038881 275 PKARVAAYKVCWPPVTGNECYDADILAAFDMAIHDGVDVLSVSLGGG 321 (794)
Q Consensus 275 P~A~L~~~kv~~~~~~G~~~~~~~i~~ai~~a~~~g~dVIN~SlG~~ 321 (794)
++++|+.+--++ | |....++.-+++..+.|+++|-+|-...
T Consensus 36 ~~~elvgf~~Cg----G--Cpg~~~~~~~~~l~~~~~d~IHlssC~~ 76 (107)
T PF08821_consen 36 EDVELVGFFTCG----G--CPGRKLVRRIKKLKKNGADVIHLSSCMV 76 (107)
T ss_pred CCeEEEEEeeCC----C--CChhHHHHHHHHHHHCCCCEEEEcCCEe
Confidence 568888875543 4 8888999999999999999999987665
No 108
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=22.04 E-value=72 Score=30.12 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=27.7
Q ss_pred eeeccccchhhHHHHHHHHHHhhCCCCCHHHHHH
Q 038881 576 NALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKS 609 (794)
Q Consensus 576 ~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~ 609 (794)
..+.|.| =|+.|-|.+||+.+.+-..+|++|.+
T Consensus 67 ~~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 67 IELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3445666 68999999999999999999999764
No 109
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=21.77 E-value=1.3e+02 Score=21.89 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=21.3
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHhcC
Q 038881 591 IVGLLKTLHPEWSPAAIKSAIMTTA 615 (794)
Q Consensus 591 ~aALl~q~~p~lsp~~ik~~L~~TA 615 (794)
.+..|++.+|+++...|+..|...-
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~ 29 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANN 29 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 4567899999999999999999653
No 110
>PRK13202 ureB urease subunit beta; Reviewed
Probab=20.30 E-value=1.6e+02 Score=26.12 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=30.5
Q ss_pred EEEEEEEEecCC-C----ceEEEEEeC---------CCCcEEEEEc-cEEEEecCCcEEEEEEE
Q 038881 709 IIVSRTVRNVGS-P----GTYIARVRN---------PKGISVSVEP-RSLKFLRVGEEKNFKVT 757 (794)
Q Consensus 709 ~~~~~tv~n~~~-~----~ty~~~~~~---------~~g~~v~~~p-~~~~~~~~~~~~~~~vt 757 (794)
.+++++|+|.|+ + +-|.+--.. .-|..+.+.. ..+.| ++|+++++++-
T Consensus 21 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~LV 83 (104)
T PRK13202 21 SRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRF-EPGIPQIVGLV 83 (104)
T ss_pred ceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEE-CCCCeEEEEEE
Confidence 678899999997 3 334432111 2366666522 35778 78999887764
No 111
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=20.22 E-value=83 Score=24.50 Aligned_cols=38 Identities=13% Similarity=0.250 Sum_probs=21.9
Q ss_pred ceeeccccchhhHHHHHHH------HHHhhCCCCCHHHHHHHHH
Q 038881 575 FNALSGTSMSCPHVSGIVG------LLKTLHPEWSPAAIKSAIM 612 (794)
Q Consensus 575 y~~~sGTSmAaP~VAG~aA------Ll~q~~p~lsp~~ik~~L~ 612 (794)
--.+.||=+..=.|....+ -+.+.||.|++++|+++|.
T Consensus 11 ~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 11 QPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp --EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred cceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 3455566666555544432 3456699999999999884
No 112
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=20.11 E-value=5.8e+02 Score=22.11 Aligned_cols=50 Identities=22% Similarity=0.247 Sum_probs=31.2
Q ss_pred CCceEEEEEEEEecCC---CceEEEEEeCCCCcEEEEE---ccEEEEecCCcEEEEE
Q 038881 705 LSGSIIVSRTVRNVGS---PGTYIARVRNPKGISVSVE---PRSLKFLRVGEEKNFK 755 (794)
Q Consensus 705 ~~~~~~~~~tv~n~~~---~~ty~~~~~~~~g~~v~~~---p~~~~~~~~~~~~~~~ 755 (794)
.++..+.+.+++|... ...|++..-...|+++.-. ...+++ .++++.+++
T Consensus 22 ~~g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~~~~w~~~~l-~~~~~~~l~ 77 (94)
T PF07233_consen 22 VNGLLRAQATLSNKSSKPLTLQYRFYWYDKQGLEVDPEQSPWQSLTL-PGGQTVTLS 77 (94)
T ss_dssp CCCEEEEEEEEEE-SSS-EEEEEEEEEE-TTS-EE--TT---EEEEE--TT-EEEEE
T ss_pred eCCeEEEEEEEEECCCCcEEEEEEEEEECCCCCCcCCCCCCCEEEEE-cCCCEEEEE
Confidence 3577889999999996 5789999888889876532 125667 566665544
Done!