BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038882
(347 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FAF|A Chain A, The Structure Of Chicken Mitochondrial Pepck.
pdb|2FAF|B Chain B, The Structure Of Chicken Mitochondrial Pepck.
pdb|2FAH|A Chain A, The Structure Of Mitochondrial Pepck, Complex With Mn And
Gdp
pdb|2FAH|B Chain B, The Structure Of Mitochondrial Pepck, Complex With Mn And
Gdp
pdb|2FAH|C Chain C, The Structure Of Mitochondrial Pepck, Complex With Mn And
Gdp
pdb|2FAH|D Chain D, The Structure Of Mitochondrial Pepck, Complex With Mn And
Gdp
pdb|2QZY|A Chain A, The Structure Of Chicken Mitochondrial Pepck In Complex
With Pep
pdb|2QZY|B Chain B, The Structure Of Chicken Mitochondrial Pepck In Complex
With Pep
Length = 608
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 13/100 (13%)
Query: 232 KKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPVDLTKVGVPIPNSTNASKV 291
++I F + SL+ K C +I S + W + +GV S + K
Sbjct: 212 RRIVSFGSGYGGNSLLGKKCFALRIASR----MAQQQGWLAEHMLILGV---TSPSGEKR 264
Query: 292 LFTTRYKEVCGKM------EAHKKLRVECLTADEAWMLFN 325
+ CGK + R+ C+ D AWM F+
Sbjct: 265 YMAAAFPSACGKTNLAMMTPSLPGWRIHCVGDDIAWMKFD 304
>pdb|3MOE|A Chain A, The Structure Of Rat Cytosolic Pepck Mutant A467g In
Complex With Beta-Sulfopyruvate And Gtp
pdb|3MOF|A Chain A, The Structure Of Rat Cytosolic Pepck Mutant A467g In
Complex With Oxalate And Gtp
pdb|3MOF|B Chain B, The Structure Of Rat Cytosolic Pepck Mutant A467g In
Complex With Oxalate And Gtp
pdb|3MOH|A Chain A, The Structure Of Rat Cytosolic Pepck Mutant A467g In
Complex With Phosphoglycolate And Gdp
pdb|3MOH|B Chain B, The Structure Of Rat Cytosolic Pepck Mutant A467g In
Complex With Phosphoglycolate And Gdp
Length = 624
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 13/102 (12%)
Query: 232 KKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPVDLTKVGVPIPNSTNASKV 291
++I F + SL+ K C +I S L ++ W + +G+ P K
Sbjct: 228 REIISFGSGYGGNSLLGKKCFALRIASR----LAKEEGWLAEHMLILGITNPE---GKKK 280
Query: 292 LFTTRYKEVCGKM------EAHKKLRVECLTADEAWMLFNVK 327
+ CGK +VEC+ D AWM F+ +
Sbjct: 281 YLAAAFPSACGKTNLAMMNPTLPGWKVECVGDDIAWMKFDAQ 322
>pdb|2QF2|A Chain A, Rat Cytosolic Pepck In Complex With Oxaloacetic Acid And
Gdp.
pdb|2QF2|B Chain B, Rat Cytosolic Pepck In Complex With Oxaloacetic Acid And
Gdp.
pdb|2QEW|A Chain A, Rat Cytosolic Pepck, In Complex With Manganese Ion.
pdb|2QEY|A Chain A, Rat Cytosolic Pepck In Complex With Gtp
pdb|2QF1|A Chain A, Rat Cytosolic Pepck In Complex With Oxaloacetic Acid.
pdb|2RK7|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With
Oxalate
pdb|2RK7|B Chain B, The Structure Of Rat Cytosolic Pepck In Complex With
Oxalate
pdb|2RK8|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With
Phosphonoformate
pdb|2RK8|B Chain B, The Structure Of Rat Cytosolic Pepck In Complex With
Phosphonoformate
pdb|2RKA|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With
Phosphoglycolate
pdb|2RKA|C Chain C, The Structure Of Rat Cytosolic Pepck In Complex With
Phosphoglycolate
pdb|2RKD|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With 3-
Phosphonopropionate
pdb|2RKE|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With
Sulfoacetate.
pdb|3DT2|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With
Oxalate And Gtp
pdb|3DT4|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With
Oxalate And Gtp
pdb|3DT4|C Chain C, The Structure Of Rat Cytosolic Pepck In Complex With
Oxalate And Gtp
pdb|3DT7|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With Beta-
Sulfopyruvate And Gtp
pdb|3DT7|B Chain B, The Structure Of Rat Cytosolic Pepck In Complex With Beta-
Sulfopyruvate And Gtp
pdb|3DTB|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With
Phosphoglycolate And Gdp
pdb|3DTB|B Chain B, The Structure Of Rat Cytosolic Pepck In Complex With
Phosphoglycolate And Gdp
Length = 624
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 13/102 (12%)
Query: 232 KKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPVDLTKVGVPIPNSTNASKV 291
++I F + SL+ K C +I S L ++ W + +G+ P K
Sbjct: 228 REIISFGSGYGGNSLLGKKCFALRIASR----LAKEEGWLAEHMLILGITNPE---GKKK 280
Query: 292 LFTTRYKEVCGKM------EAHKKLRVECLTADEAWMLFNVK 327
+ CGK +VEC+ D AWM F+ +
Sbjct: 281 YLAAAFPSACGKTNLAMMNPTLPGWKVECVGDDIAWMKFDAQ 322
>pdb|1KHB|A Chain A, Pepck Complex With Nonhydrolyzable Gtp Analog, Native Data
pdb|1KHF|A Chain A, Pepck Complex With Pep
pdb|1KHG|A Chain A, Pepck
pdb|1M51|A Chain A, Pepck Complex With A Gtp-Competitive Inhibitor
pdb|1NHX|A Chain A, Pepck Complex With A Gtp-Competitive Inhibitor
pdb|2GMV|A Chain A, Pepck Complex With A Gtp-Competitive Inhibitor
pdb|2GMV|B Chain B, Pepck Complex With A Gtp-Competitive Inhibitor
Length = 625
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 13/102 (12%)
Query: 232 KKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPVDLTKVGVPIPNSTNASKV 291
++I F + SL+ K C ++ S L ++ W + +G+ P K
Sbjct: 229 REIISFGSGYGGNSLLGKKCFALRMASR----LAKEEGWLAEHMLVLGITNPE---GEKK 281
Query: 292 LFTTRYKEVCGKM------EAHKKLRVECLTADEAWMLFNVK 327
+ CGK + +VEC+ D AWM F+ +
Sbjct: 282 YLAAAFPSACGKTNLAMMNPSLPGWKVECVGDDIAWMKFDAQ 323
>pdb|2BGC|A Chain A, Prfa-G145s, A Constitutive Active Mutant Of The
Transcriptional Regulator In L.Monocytogenes
pdb|2BGC|B Chain B, Prfa-G145s, A Constitutive Active Mutant Of The
Transcriptional Regulator In L.Monocytogenes
pdb|2BGC|D Chain D, Prfa-G145s, A Constitutive Active Mutant Of The
Transcriptional Regulator In L.Monocytogenes
pdb|2BGC|E Chain E, Prfa-G145s, A Constitutive Active Mutant Of The
Transcriptional Regulator In L.Monocytogenes
pdb|2BGC|F Chain F, Prfa-G145s, A Constitutive Active Mutant Of The
Transcriptional Regulator In L.Monocytogenes
pdb|2BGC|G Chain G, Prfa-G145s, A Constitutive Active Mutant Of The
Transcriptional Regulator In L.Monocytogenes
pdb|2BGC|H Chain H, Prfa-G145s, A Constitutive Active Mutant Of The
Transcriptional Regulator In L.Monocytogenes
pdb|2BGC|I Chain I, Prfa-G145s, A Constitutive Active Mutant Of The
Transcriptional Regulator In L.Monocytogenes
Length = 238
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 100 NLCLGGYCSKKCISSYKFGKEVSTKLKVLAD---LKGEGDFKHIAERTAKAPLIEEMPIE 156
N LG CS+ I +Y +GKE +K+ D ++ G IA +A + +I ++ E
Sbjct: 138 NGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQE 197
Query: 157 PRIIGQESIF 166
I+ + S F
Sbjct: 198 KVIVYKNSCF 207
>pdb|3M9H|A Chain A, Crystal Structure Of The Amino Terminal Coiled Coil
Domain Of The Mycobacterium Tuberculosis Proteasomal
Atpase Mpa
pdb|3M9H|B Chain B, Crystal Structure Of The Amino Terminal Coiled Coil
Domain Of The Mycobacterium Tuberculosis Proteasomal
Atpase Mpa
pdb|3M9H|C Chain C, Crystal Structure Of The Amino Terminal Coiled Coil
Domain Of The Mycobacterium Tuberculosis Proteasomal
Atpase Mpa
pdb|3M9H|D Chain D, Crystal Structure Of The Amino Terminal Coiled Coil
Domain Of The Mycobacterium Tuberculosis Proteasomal
Atpase Mpa
pdb|3M9H|E Chain E, Crystal Structure Of The Amino Terminal Coiled Coil
Domain Of The Mycobacterium Tuberculosis Proteasomal
Atpase Mpa
pdb|3M9H|F Chain F, Crystal Structure Of The Amino Terminal Coiled Coil
Domain Of The Mycobacterium Tuberculosis Proteasomal
Atpase Mpa
Length = 55
Score = 28.5 bits (62), Expect = 5.5, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 18 SHCLNCTERQVAFISELEDNLDSLQAEMQKLIEVRDDVMTRVIIAEQQQMKRLNQ 72
SH + R I +LE +DSL A KL+E + + ++A ++++ RL Q
Sbjct: 2 SHMSHAPTRSARDIHQLEARIDSLAARNSKLMETLKEARQQ-LLALREEVDRLGQ 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,591,365
Number of Sequences: 62578
Number of extensions: 303080
Number of successful extensions: 790
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 789
Number of HSP's gapped (non-prelim): 15
length of query: 347
length of database: 14,973,337
effective HSP length: 100
effective length of query: 247
effective length of database: 8,715,537
effective search space: 2152737639
effective search space used: 2152737639
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)