Query 038882
Match_columns 347
No_of_seqs 347 out of 2154
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 04:13:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038882.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038882hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.2E-46 2.6E-51 377.9 27.7 324 16-347 8-359 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 5.3E-34 1.2E-38 257.7 14.4 185 162-347 1-199 (287)
3 PLN03210 Resistant to P. syrin 99.9 2.9E-26 6.2E-31 241.2 19.1 183 157-347 184-392 (1153)
4 PF01637 Arch_ATPase: Archaeal 99.5 6E-14 1.3E-18 122.4 8.3 183 159-346 1-230 (234)
5 PRK00411 cdc6 cell division co 99.4 6.8E-12 1.5E-16 118.5 18.0 183 156-340 29-241 (394)
6 TIGR03015 pepcterm_ATPase puta 99.4 2.9E-11 6.4E-16 108.1 18.8 164 176-347 41-235 (269)
7 PF05729 NACHT: NACHT domain 99.4 7.6E-12 1.7E-16 103.2 11.7 141 179-328 1-163 (166)
8 TIGR02928 orc1/cdc6 family rep 99.3 7.2E-11 1.6E-15 110.4 18.1 173 156-328 14-212 (365)
9 PRK04841 transcriptional regul 99.3 5.9E-11 1.3E-15 123.7 14.2 182 156-347 13-222 (903)
10 TIGR00635 ruvB Holliday juncti 99.2 2.6E-10 5.6E-15 104.0 12.1 175 157-345 4-196 (305)
11 PRK00080 ruvB Holliday junctio 99.1 1.1E-09 2.5E-14 100.7 12.0 175 157-345 25-217 (328)
12 COG2256 MGS1 ATPase related to 99.1 1.5E-09 3.3E-14 98.2 12.1 144 169-342 39-204 (436)
13 PRK06893 DNA replication initi 99.0 1.6E-09 3.4E-14 94.5 10.9 137 177-343 38-196 (229)
14 PRK13342 recombination factor 99.0 1.8E-09 4E-14 102.3 11.1 159 157-345 12-191 (413)
15 TIGR03420 DnaA_homol_Hda DnaA 99.0 1.9E-09 4.2E-14 93.8 10.0 154 162-345 22-196 (226)
16 PRK12402 replication factor C 99.0 7.8E-09 1.7E-13 95.5 12.4 182 157-344 15-220 (337)
17 PF13173 AAA_14: AAA domain 98.9 2.3E-09 4.9E-14 84.7 6.6 120 178-320 2-127 (128)
18 cd00009 AAA The AAA+ (ATPases 98.9 1.3E-08 2.8E-13 81.6 10.4 123 160-299 1-131 (151)
19 PRK14949 DNA polymerase III su 98.9 1.6E-08 3.5E-13 101.3 12.8 180 157-344 16-214 (944)
20 PRK14961 DNA polymerase III su 98.9 5.3E-08 1.2E-12 90.7 14.9 179 157-344 16-214 (363)
21 PRK07003 DNA polymerase III su 98.9 2.7E-08 5.9E-13 97.9 13.4 180 157-344 16-214 (830)
22 KOG2028 ATPase related to the 98.9 3.5E-08 7.5E-13 88.2 12.7 134 169-327 153-293 (554)
23 PF13191 AAA_16: AAA ATPase do 98.9 5.7E-09 1.2E-13 87.7 7.4 74 158-234 1-82 (185)
24 PRK00440 rfc replication facto 98.9 4.8E-08 1E-12 89.5 13.9 168 157-344 17-197 (319)
25 COG1474 CDC6 Cdc6-related prot 98.9 1.6E-07 3.4E-12 87.0 17.3 168 157-328 17-203 (366)
26 PRK05564 DNA polymerase III su 98.9 5.7E-08 1.2E-12 88.8 13.9 170 157-345 4-185 (313)
27 PRK08727 hypothetical protein; 98.8 3.8E-08 8.2E-13 86.0 11.7 155 159-343 22-197 (233)
28 PLN03025 replication factor C 98.8 8.2E-08 1.8E-12 88.0 14.1 170 157-344 13-194 (319)
29 PRK14963 DNA polymerase III su 98.8 1.1E-08 2.4E-13 98.6 8.6 178 157-344 14-211 (504)
30 PTZ00112 origin recognition co 98.8 1.2E-07 2.6E-12 94.3 15.7 172 156-329 754-950 (1164)
31 PRK12323 DNA polymerase III su 98.8 5.5E-08 1.2E-12 94.5 13.3 186 157-345 16-220 (700)
32 PTZ00202 tuzin; Provisional 98.8 1.2E-07 2.7E-12 87.6 14.7 159 156-328 261-434 (550)
33 PF13401 AAA_22: AAA domain; P 98.8 1.2E-08 2.7E-13 80.6 7.1 116 178-297 4-125 (131)
34 PRK14956 DNA polymerase III su 98.8 4.4E-08 9.4E-13 92.7 11.5 180 157-344 18-216 (484)
35 COG3899 Predicted ATPase [Gene 98.8 3.6E-08 7.8E-13 100.8 11.7 189 159-347 2-257 (849)
36 PRK14960 DNA polymerase III su 98.8 7.1E-08 1.5E-12 93.9 12.8 180 157-344 15-213 (702)
37 cd01128 rho_factor Transcripti 98.8 2.2E-08 4.8E-13 87.8 7.9 92 177-271 15-114 (249)
38 PRK08084 DNA replication initi 98.8 1E-07 2.2E-12 83.4 12.1 157 157-343 23-202 (235)
39 PRK06645 DNA polymerase III su 98.8 1.6E-07 3.6E-12 90.3 14.3 183 157-344 21-223 (507)
40 TIGR02903 spore_lon_C ATP-depe 98.8 3E-06 6.6E-11 84.1 23.5 170 157-328 154-366 (615)
41 PRK07940 DNA polymerase III su 98.8 2.3E-07 5E-12 86.8 14.6 179 157-345 5-208 (394)
42 TIGR00678 holB DNA polymerase 98.7 4.3E-07 9.3E-12 76.7 15.0 170 168-346 3-187 (188)
43 PRK13341 recombination factor 98.7 5.5E-08 1.2E-12 97.4 11.0 157 157-343 28-210 (725)
44 PF05496 RuvB_N: Holliday junc 98.7 8.9E-08 1.9E-12 81.2 10.4 157 157-344 24-215 (233)
45 PRK14957 DNA polymerase III su 98.7 1.5E-07 3.3E-12 91.1 13.3 180 157-344 16-214 (546)
46 PRK14951 DNA polymerase III su 98.7 1.6E-07 3.5E-12 92.1 13.5 182 157-344 16-219 (618)
47 PRK14958 DNA polymerase III su 98.7 1.6E-07 3.6E-12 90.7 13.0 179 157-344 16-214 (509)
48 PRK04195 replication factor C 98.7 1.4E-07 3E-12 91.3 12.5 162 157-343 14-195 (482)
49 PRK14955 DNA polymerase III su 98.7 1.1E-07 2.3E-12 89.8 11.4 186 157-344 16-222 (397)
50 PRK07994 DNA polymerase III su 98.7 1.1E-07 2.4E-12 93.5 11.6 179 157-344 16-214 (647)
51 PRK14962 DNA polymerase III su 98.7 2.8E-07 6E-12 88.3 14.1 178 157-343 14-211 (472)
52 PRK14964 DNA polymerase III su 98.7 2.1E-07 4.5E-12 88.9 13.0 180 157-344 13-211 (491)
53 TIGR02397 dnaX_nterm DNA polym 98.7 5.6E-07 1.2E-11 83.8 15.1 167 157-345 14-213 (355)
54 PRK07471 DNA polymerase III su 98.7 5.6E-07 1.2E-11 83.5 14.7 187 157-345 19-233 (365)
55 PRK09087 hypothetical protein; 98.7 2.1E-07 4.5E-12 80.8 10.7 129 177-344 43-189 (226)
56 PRK09376 rho transcription ter 98.6 9.8E-08 2.1E-12 87.6 8.4 99 169-271 159-267 (416)
57 COG2909 MalT ATP-dependent tra 98.6 5.4E-07 1.2E-11 88.9 13.6 180 157-344 19-227 (894)
58 PRK09112 DNA polymerase III su 98.6 3.3E-07 7.1E-12 84.6 11.5 185 157-345 23-235 (351)
59 PRK08691 DNA polymerase III su 98.6 2.8E-07 6.1E-12 90.6 11.3 180 157-344 16-214 (709)
60 PRK05896 DNA polymerase III su 98.6 3E-07 6.5E-12 89.3 11.3 179 157-344 16-214 (605)
61 PRK14969 DNA polymerase III su 98.6 5.8E-07 1.3E-11 87.5 13.3 179 157-344 16-214 (527)
62 PRK05642 DNA replication initi 98.6 4.1E-07 8.9E-12 79.5 10.9 136 178-343 45-201 (234)
63 PRK14970 DNA polymerase III su 98.6 9.7E-07 2.1E-11 82.6 14.1 168 157-344 17-203 (367)
64 TIGR01242 26Sp45 26S proteasom 98.6 1.9E-07 4.1E-12 87.2 9.0 163 157-343 122-327 (364)
65 PRK07764 DNA polymerase III su 98.6 8.1E-07 1.8E-11 90.2 13.8 179 157-344 15-215 (824)
66 PRK09111 DNA polymerase III su 98.6 7.5E-07 1.6E-11 87.5 12.6 182 157-344 24-227 (598)
67 PRK14954 DNA polymerase III su 98.6 1.9E-06 4.2E-11 84.9 15.3 187 157-344 16-222 (620)
68 PRK14952 DNA polymerase III su 98.6 1.2E-06 2.7E-11 85.6 13.8 179 157-344 13-213 (584)
69 PRK08903 DnaA regulatory inact 98.6 4.6E-07 9.9E-12 78.9 9.8 153 159-345 21-194 (227)
70 TIGR03345 VI_ClpV1 type VI sec 98.5 1.3E-06 2.9E-11 89.5 13.8 169 157-344 187-390 (852)
71 PF00308 Bac_DnaA: Bacterial d 98.5 6.5E-07 1.4E-11 77.4 9.6 168 157-343 9-201 (219)
72 PF14516 AAA_35: AAA-like doma 98.5 1.2E-05 2.6E-10 74.0 17.9 186 157-346 11-235 (331)
73 PRK14087 dnaA chromosomal repl 98.5 1.7E-06 3.7E-11 82.7 12.5 171 157-344 116-313 (450)
74 TIGR02881 spore_V_K stage V sp 98.5 9.3E-07 2E-11 78.7 9.7 150 158-328 7-191 (261)
75 PF05621 TniB: Bacterial TniB 98.5 3.1E-06 6.7E-11 75.2 12.5 182 157-344 34-255 (302)
76 PRK03992 proteasome-activating 98.5 3.6E-06 7.9E-11 79.1 13.9 163 157-343 131-336 (389)
77 KOG2543 Origin recognition com 98.5 4.3E-06 9.2E-11 75.6 13.3 166 156-328 5-193 (438)
78 TIGR00767 rho transcription te 98.5 6.7E-07 1.4E-11 82.6 8.5 93 177-271 167-266 (415)
79 TIGR02639 ClpA ATP-dependent C 98.4 2.4E-06 5.1E-11 86.9 13.2 154 157-327 182-357 (731)
80 PRK14959 DNA polymerase III su 98.4 2.7E-06 5.9E-11 83.2 12.7 179 157-344 16-214 (624)
81 PRK14950 DNA polymerase III su 98.4 1.5E-06 3.3E-11 85.9 11.0 181 157-345 16-216 (585)
82 PRK14971 DNA polymerase III su 98.4 4.8E-06 1E-10 82.4 14.3 181 157-344 17-216 (614)
83 KOG0989 Replication factor C, 98.4 1.6E-06 3.5E-11 76.1 9.6 173 157-343 36-223 (346)
84 PHA02544 44 clamp loader, smal 98.4 3.7E-06 8E-11 77.0 11.5 144 157-325 21-170 (316)
85 PRK08451 DNA polymerase III su 98.4 7.3E-06 1.6E-10 79.2 13.9 180 157-344 14-212 (535)
86 TIGR00362 DnaA chromosomal rep 98.4 6.4E-06 1.4E-10 78.1 13.1 147 178-343 136-303 (405)
87 PRK06305 DNA polymerase III su 98.4 1E-05 2.3E-10 77.3 14.5 179 157-344 17-216 (451)
88 PRK07133 DNA polymerase III su 98.4 9.2E-06 2E-10 80.8 14.2 174 157-344 18-213 (725)
89 CHL00095 clpC Clp protease ATP 98.3 2.1E-06 4.6E-11 88.3 10.2 170 157-342 179-379 (821)
90 PRK14953 DNA polymerase III su 98.3 1.6E-05 3.6E-10 76.6 15.5 179 157-344 16-214 (486)
91 PRK14088 dnaA chromosomal repl 98.3 1E-05 2.2E-10 77.3 13.9 169 157-343 106-298 (440)
92 TIGR02880 cbbX_cfxQ probable R 98.3 8.3E-06 1.8E-10 73.4 12.6 130 180-328 60-208 (284)
93 PRK11331 5-methylcytosine-spec 98.3 5.3E-06 1.1E-10 77.9 11.3 69 157-228 175-243 (459)
94 PRK14948 DNA polymerase III su 98.3 1.3E-05 2.7E-10 79.5 14.5 181 157-344 16-216 (620)
95 PRK14965 DNA polymerase III su 98.3 6.4E-06 1.4E-10 81.2 12.3 179 157-344 16-214 (576)
96 PRK12422 chromosomal replicati 98.3 1.2E-05 2.6E-10 76.7 13.6 144 178-342 141-305 (445)
97 TIGR00763 lon ATP-dependent pr 98.3 0.00018 3.9E-09 73.8 22.7 157 156-327 319-504 (775)
98 PRK06620 hypothetical protein; 98.3 2.8E-06 6.1E-11 73.1 7.7 123 179-343 45-182 (214)
99 PRK05563 DNA polymerase III su 98.3 2.5E-05 5.5E-10 76.7 15.3 179 157-344 16-214 (559)
100 PTZ00454 26S protease regulato 98.3 1.8E-05 3.8E-10 74.4 13.5 164 157-343 145-350 (398)
101 KOG2227 Pre-initiation complex 98.3 2E-05 4.3E-10 73.2 13.2 183 156-342 149-360 (529)
102 PRK00149 dnaA chromosomal repl 98.3 1.1E-05 2.4E-10 77.5 12.2 147 178-343 148-315 (450)
103 TIGR03346 chaperone_ClpB ATP-d 98.2 9.9E-06 2.2E-10 83.6 12.4 154 157-327 173-348 (852)
104 COG1373 Predicted ATPase (AAA+ 98.2 1.6E-05 3.4E-10 74.9 12.6 135 162-323 22-162 (398)
105 PRK07399 DNA polymerase III su 98.2 3.4E-05 7.4E-10 70.3 14.2 187 157-345 4-216 (314)
106 PRK06647 DNA polymerase III su 98.2 3.9E-05 8.4E-10 75.2 15.3 179 157-344 16-214 (563)
107 CHL00181 cbbX CbbX; Provisiona 98.2 2.6E-05 5.6E-10 70.2 12.5 131 179-328 60-209 (287)
108 TIGR03689 pup_AAA proteasome A 98.2 1.3E-05 2.7E-10 77.2 11.0 160 157-329 182-379 (512)
109 PRK10865 protein disaggregatio 98.2 1.2E-05 2.7E-10 82.7 11.6 46 157-202 178-223 (857)
110 smart00382 AAA ATPases associa 98.2 9.3E-06 2E-10 64.2 7.9 89 179-274 3-92 (148)
111 COG3903 Predicted ATPase [Gene 98.1 6.5E-07 1.4E-11 81.8 1.1 159 177-347 13-186 (414)
112 PRK11034 clpA ATP-dependent Cl 98.1 1.3E-05 2.7E-10 81.1 10.2 155 157-327 186-361 (758)
113 PRK05707 DNA polymerase III su 98.1 4.1E-05 8.9E-10 70.2 12.4 159 178-345 22-198 (328)
114 PF00004 AAA: ATPase family as 98.1 9.3E-06 2E-10 63.9 7.0 22 181-202 1-22 (132)
115 PRK08058 DNA polymerase III su 98.1 7.5E-05 1.6E-09 68.7 13.6 162 158-327 6-181 (329)
116 PRK14086 dnaA chromosomal repl 98.1 2.7E-05 5.9E-10 76.0 11.0 145 179-342 315-480 (617)
117 TIGR01241 FtsH_fam ATP-depende 98.1 0.00015 3.3E-09 70.6 16.2 164 157-343 55-259 (495)
118 PTZ00361 26 proteosome regulat 98.1 3.3E-05 7.1E-10 73.2 10.9 164 157-343 183-388 (438)
119 COG0466 Lon ATP-dependent Lon 98.1 0.0036 7.8E-08 61.6 24.6 158 156-328 322-508 (782)
120 KOG0733 Nuclear AAA ATPase (VC 98.0 7.8E-05 1.7E-09 71.4 12.4 92 158-272 191-294 (802)
121 CHL00176 ftsH cell division pr 98.0 7.2E-05 1.6E-09 74.3 12.8 164 157-343 183-387 (638)
122 COG1222 RPT1 ATP-dependent 26S 98.0 0.0001 2.3E-09 66.4 12.4 162 158-343 152-356 (406)
123 COG2255 RuvB Holliday junction 98.0 0.00016 3.4E-09 63.3 13.0 157 157-344 26-217 (332)
124 PRK08769 DNA polymerase III su 98.0 0.00017 3.7E-09 65.6 13.7 169 164-345 11-203 (319)
125 PRK10787 DNA-binding ATP-depen 98.0 0.00056 1.2E-08 69.8 18.2 158 156-328 321-506 (784)
126 PRK10536 hypothetical protein; 97.9 2.5E-05 5.3E-10 68.2 7.0 55 157-214 55-109 (262)
127 PF10443 RNA12: RNA12 protein; 97.9 0.00025 5.5E-09 65.9 13.9 157 162-329 1-230 (431)
128 COG3267 ExeA Type II secretory 97.9 0.00031 6.6E-09 60.6 13.2 168 175-347 48-242 (269)
129 COG2812 DnaX DNA polymerase II 97.9 5.8E-05 1.2E-09 72.3 9.7 178 157-343 16-213 (515)
130 PF05673 DUF815: Protein of un 97.9 5.6E-05 1.2E-09 65.2 8.5 46 157-202 27-76 (249)
131 PRK08118 topology modulation p 97.9 2.9E-05 6.3E-10 64.1 6.5 36 179-214 2-37 (167)
132 PRK06090 DNA polymerase III su 97.9 0.0004 8.6E-09 63.2 14.4 170 165-345 11-196 (319)
133 KOG2004 Mitochondrial ATP-depe 97.9 0.0019 4.1E-08 63.3 19.4 158 156-328 410-596 (906)
134 PF13177 DNA_pol3_delta2: DNA 97.9 0.00011 2.4E-09 60.3 9.8 146 161-316 1-162 (162)
135 PRK06871 DNA polymerase III su 97.9 0.00057 1.2E-08 62.4 14.6 172 165-345 10-198 (325)
136 TIGR02640 gas_vesic_GvpN gas v 97.9 0.00046 9.9E-09 61.4 13.7 152 165-329 10-199 (262)
137 PRK07261 topology modulation p 97.9 4.7E-05 1E-09 63.1 6.9 23 180-202 2-24 (171)
138 PRK08116 hypothetical protein; 97.8 3.1E-05 6.7E-10 69.0 6.1 102 179-298 115-221 (268)
139 TIGR00602 rad24 checkpoint pro 97.8 8.5E-05 1.8E-09 73.4 9.1 46 157-202 84-134 (637)
140 PRK12608 transcription termina 97.8 0.00019 4.2E-09 66.1 10.7 102 167-270 121-230 (380)
141 PF04665 Pox_A32: Poxvirus A32 97.8 8.4E-05 1.8E-09 64.5 7.9 36 179-217 14-49 (241)
142 TIGR01243 CDC48 AAA family ATP 97.8 0.00026 5.6E-09 72.3 12.6 164 157-343 453-656 (733)
143 COG0593 DnaA ATPase involved i 97.8 0.00012 2.6E-09 68.2 9.1 130 177-328 112-257 (408)
144 PRK06964 DNA polymerase III su 97.8 0.00087 1.9E-08 61.6 14.4 86 259-345 131-220 (342)
145 TIGR01243 CDC48 AAA family ATP 97.8 0.00023 5E-09 72.7 11.6 164 157-343 178-380 (733)
146 COG0470 HolB ATPase involved i 97.8 0.00038 8.2E-09 63.8 12.0 143 159-320 3-173 (325)
147 CHL00195 ycf46 Ycf46; Provisio 97.7 0.00028 6E-09 68.0 11.3 164 157-343 228-428 (489)
148 KOG0741 AAA+-type ATPase [Post 97.7 0.00088 1.9E-08 63.4 13.4 125 177-327 537-685 (744)
149 PRK07993 DNA polymerase III su 97.7 0.00038 8.2E-09 64.0 10.9 172 165-345 10-199 (334)
150 TIGR02639 ClpA ATP-dependent C 97.7 0.00062 1.4E-08 69.4 13.5 159 156-328 453-662 (731)
151 COG0542 clpA ATP-binding subun 97.6 0.0028 6.1E-08 63.6 16.7 105 157-272 491-605 (786)
152 PRK09361 radB DNA repair and r 97.6 0.00032 7E-09 60.9 9.2 89 177-270 22-117 (225)
153 PRK10865 protein disaggregatio 97.6 0.00051 1.1E-08 71.0 11.9 47 156-202 567-622 (857)
154 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00033 7.1E-09 72.6 10.2 47 156-202 564-619 (852)
155 PRK04296 thymidine kinase; Pro 97.6 8.2E-05 1.8E-09 62.8 4.8 112 179-298 3-116 (190)
156 TIGR03345 VI_ClpV1 type VI sec 97.6 0.00022 4.7E-09 73.5 8.7 47 156-202 565-620 (852)
157 COG1223 Predicted ATPase (AAA+ 97.6 0.00082 1.8E-08 58.2 10.7 163 157-343 121-318 (368)
158 TIGR02237 recomb_radB DNA repa 97.6 0.00032 6.9E-09 60.2 8.2 90 177-271 11-108 (209)
159 CHL00095 clpC Clp protease ATP 97.6 0.00027 5.9E-09 72.9 8.9 47 156-202 508-563 (821)
160 PRK08181 transposase; Validate 97.5 0.00014 3E-09 64.6 5.7 105 171-298 101-209 (269)
161 PRK12377 putative replication 97.5 0.0014 3E-08 57.5 11.8 74 178-271 101-174 (248)
162 cd01393 recA_like RecA is a b 97.5 0.0012 2.7E-08 57.2 11.4 91 177-271 18-125 (226)
163 KOG0730 AAA+-type ATPase [Post 97.5 0.002 4.4E-08 62.6 13.1 144 177-343 467-636 (693)
164 PF07693 KAP_NTPase: KAP famil 97.5 0.0022 4.8E-08 58.8 13.2 40 163-202 2-44 (325)
165 PF13207 AAA_17: AAA domain; P 97.5 0.0001 2.2E-09 57.2 3.7 23 180-202 1-23 (121)
166 PF02562 PhoH: PhoH-like prote 97.5 0.00022 4.7E-09 60.5 5.9 53 161-216 4-56 (205)
167 PRK08699 DNA polymerase III su 97.5 0.0011 2.4E-08 60.8 10.7 160 178-346 21-202 (325)
168 PF00448 SRP54: SRP54-type pro 97.5 0.0006 1.3E-08 57.8 8.4 56 178-236 1-57 (196)
169 cd01394 radB RadB. The archaea 97.5 0.0014 2.9E-08 56.6 10.8 90 177-271 18-114 (218)
170 PRK06526 transposase; Provisio 97.5 0.00012 2.5E-09 64.7 4.1 26 177-202 97-122 (254)
171 smart00763 AAA_PrkA PrkA AAA d 97.5 0.00018 3.9E-09 65.9 5.3 45 158-202 52-102 (361)
172 PF01695 IstB_IS21: IstB-like 97.4 0.0002 4.3E-09 59.8 5.0 75 177-272 46-120 (178)
173 KOG0991 Replication factor C, 97.4 0.00038 8.1E-09 59.2 6.4 46 157-202 27-72 (333)
174 PRK09183 transposase/IS protei 97.4 0.00024 5.3E-09 63.0 5.3 25 178-202 102-126 (259)
175 cd01131 PilT Pilus retraction 97.4 0.00026 5.6E-09 60.2 5.2 110 179-301 2-112 (198)
176 KOG0735 AAA+-type ATPase [Post 97.4 0.0013 2.8E-08 64.4 10.0 146 177-343 430-608 (952)
177 cd00561 CobA_CobO_BtuR ATP:cor 97.4 0.00082 1.8E-08 54.6 7.4 117 179-299 3-139 (159)
178 cd01123 Rad51_DMC1_radA Rad51_ 97.3 0.00083 1.8E-08 58.6 8.0 93 177-271 18-126 (235)
179 PRK12727 flagellar biosynthesi 97.3 0.017 3.7E-07 55.8 17.3 25 178-202 350-374 (559)
180 PRK06835 DNA replication prote 97.3 0.0056 1.2E-07 56.1 13.6 37 178-217 183-219 (329)
181 PRK05541 adenylylsulfate kinas 97.3 0.00069 1.5E-08 56.4 7.1 36 177-215 6-41 (176)
182 cd01120 RecA-like_NTPases RecA 97.3 0.0017 3.8E-08 52.6 9.4 39 180-221 1-39 (165)
183 KOG0739 AAA+-type ATPase [Post 97.3 0.0043 9.3E-08 54.9 11.8 92 157-272 133-237 (439)
184 PRK08939 primosomal protein Dn 97.3 0.00077 1.7E-08 61.2 7.3 116 161-297 135-260 (306)
185 COG0464 SpoVK ATPases of the A 97.3 0.0021 4.6E-08 62.6 10.9 143 177-342 275-445 (494)
186 KOG0734 AAA+-type ATPase conta 97.3 0.00055 1.2E-08 64.8 6.2 45 158-202 305-361 (752)
187 cd03247 ABCC_cytochrome_bd The 97.3 0.00097 2.1E-08 55.6 7.3 127 177-312 27-169 (178)
188 cd01133 F1-ATPase_beta F1 ATP 97.3 0.0016 3.4E-08 57.7 8.8 92 177-271 68-174 (274)
189 PF08423 Rad51: Rad51; InterP 97.3 0.0019 4.2E-08 57.1 9.5 94 177-271 37-144 (256)
190 PLN00020 ribulose bisphosphate 97.3 0.00051 1.1E-08 62.9 5.8 27 176-202 146-172 (413)
191 cd03238 ABC_UvrA The excision 97.3 0.0012 2.6E-08 54.9 7.6 124 177-312 20-161 (176)
192 PRK11034 clpA ATP-dependent Cl 97.3 0.00085 1.9E-08 68.1 7.9 46 157-202 458-512 (758)
193 KOG2228 Origin recognition com 97.3 0.004 8.6E-08 56.0 11.0 169 157-328 24-219 (408)
194 KOG0736 Peroxisome assembly fa 97.2 0.0098 2.1E-07 59.0 14.6 167 148-341 667-876 (953)
195 PRK04132 replication factor C 97.2 0.0043 9.2E-08 63.4 12.7 140 186-344 574-725 (846)
196 TIGR02012 tigrfam_recA protein 97.2 0.0012 2.6E-08 60.0 7.8 87 177-271 54-144 (321)
197 COG2884 FtsE Predicted ATPase 97.2 0.0019 4.1E-08 53.4 8.0 126 177-306 27-205 (223)
198 cd03228 ABCC_MRP_Like The MRP 97.2 0.0013 2.7E-08 54.6 7.4 126 177-312 27-167 (171)
199 PRK10733 hflB ATP-dependent me 97.2 0.0019 4.1E-08 64.9 9.7 141 179-342 186-355 (644)
200 cd01121 Sms Sms (bacterial rad 97.2 0.0028 6.1E-08 59.1 10.2 86 177-271 81-169 (372)
201 cd00983 recA RecA is a bacter 97.2 0.0012 2.7E-08 60.0 7.6 87 177-271 54-144 (325)
202 cd03214 ABC_Iron-Siderophores_ 97.2 0.0013 2.9E-08 54.9 7.3 121 177-301 24-161 (180)
203 KOG0731 AAA+-type ATPase conta 97.2 0.0032 6.9E-08 62.8 10.8 147 158-328 312-495 (774)
204 PRK13695 putative NTPase; Prov 97.2 0.00088 1.9E-08 55.6 6.0 23 180-202 2-24 (174)
205 KOG1514 Origin recognition com 97.2 0.0033 7.1E-08 61.6 10.4 167 156-328 395-589 (767)
206 TIGR03877 thermo_KaiC_1 KaiC d 97.2 0.0036 7.7E-08 54.8 10.0 89 177-271 20-137 (237)
207 cd03223 ABCD_peroxisomal_ALDP 97.2 0.0028 6.1E-08 52.2 8.8 125 177-312 26-160 (166)
208 PRK07952 DNA replication prote 97.2 0.0032 6.8E-08 55.2 9.5 76 178-272 99-174 (244)
209 COG1484 DnaC DNA replication p 97.2 0.0022 4.9E-08 56.6 8.6 75 177-271 104-178 (254)
210 cd03115 SRP The signal recogni 97.2 0.0023 5.1E-08 53.0 8.3 23 180-202 2-24 (173)
211 COG2607 Predicted ATPase (AAA+ 97.2 0.0026 5.5E-08 54.5 8.4 46 157-202 60-109 (287)
212 cd03216 ABC_Carb_Monos_I This 97.1 0.00089 1.9E-08 55.0 5.6 115 177-301 25-145 (163)
213 PRK09354 recA recombinase A; P 97.1 0.0018 3.9E-08 59.4 8.1 87 177-271 59-149 (349)
214 cd03246 ABCC_Protease_Secretio 97.1 0.0011 2.5E-08 54.9 6.2 126 177-312 27-168 (173)
215 TIGR02858 spore_III_AA stage I 97.1 0.0041 8.9E-08 55.3 10.0 127 167-301 99-232 (270)
216 PRK06696 uridine kinase; Valid 97.1 0.00085 1.8E-08 58.2 5.5 42 161-202 2-46 (223)
217 PF00485 PRK: Phosphoribulokin 97.1 0.0044 9.6E-08 52.4 9.7 82 180-264 1-87 (194)
218 KOG0744 AAA+-type ATPase [Post 97.1 0.0018 3.9E-08 57.8 7.3 81 178-271 177-261 (423)
219 COG1066 Sms Predicted ATP-depe 97.1 0.0046 9.9E-08 57.1 10.1 95 167-271 80-179 (456)
220 COG0542 clpA ATP-binding subun 97.1 0.0015 3.2E-08 65.6 7.6 153 157-327 170-345 (786)
221 cd03230 ABC_DR_subfamily_A Thi 97.1 0.0011 2.4E-08 55.0 5.9 117 177-302 25-159 (173)
222 KOG0743 AAA+-type ATPase [Post 97.1 0.011 2.5E-07 55.2 12.7 119 179-330 236-385 (457)
223 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.1 0.0019 4.1E-08 51.9 6.9 104 177-302 25-131 (144)
224 PRK06067 flagellar accessory p 97.1 0.0042 9.1E-08 54.2 9.6 88 177-270 24-130 (234)
225 PRK15455 PrkA family serine pr 97.1 0.00068 1.5E-08 65.6 4.8 45 158-202 77-127 (644)
226 COG0488 Uup ATPase components 97.1 0.01 2.2E-07 57.9 12.8 134 177-313 347-510 (530)
227 PF13604 AAA_30: AAA domain; P 97.1 0.0015 3.2E-08 55.4 6.3 35 168-202 8-42 (196)
228 COG4608 AppF ABC-type oligopep 97.1 0.0035 7.7E-08 54.9 8.6 125 177-305 38-177 (268)
229 COG1136 SalX ABC-type antimicr 97.1 0.0034 7.4E-08 53.9 8.4 130 177-312 30-215 (226)
230 PRK08233 hypothetical protein; 97.0 0.0032 7E-08 52.4 8.3 25 178-202 3-27 (182)
231 TIGR00959 ffh signal recogniti 97.0 0.0039 8.5E-08 59.1 9.6 26 177-202 98-123 (428)
232 PRK00771 signal recognition pa 97.0 0.0061 1.3E-07 58.0 10.9 57 177-236 94-151 (437)
233 PF14532 Sigma54_activ_2: Sigm 97.0 0.0007 1.5E-08 54.0 3.9 43 160-202 1-45 (138)
234 COG0572 Udk Uridine kinase [Nu 97.0 0.0026 5.6E-08 54.1 7.4 26 177-202 7-32 (218)
235 COG1875 NYN ribonuclease and A 97.0 0.0022 4.7E-08 58.2 7.2 54 160-213 227-280 (436)
236 PRK04301 radA DNA repair and r 97.0 0.0074 1.6E-07 55.3 10.9 93 177-271 101-209 (317)
237 TIGR00554 panK_bact pantothena 97.0 0.0066 1.4E-07 54.5 10.1 82 176-260 60-141 (290)
238 PRK10867 signal recognition pa 97.0 0.0047 1E-07 58.6 9.5 26 177-202 99-124 (433)
239 TIGR02238 recomb_DMC1 meiotic 97.0 0.011 2.4E-07 53.8 11.7 94 177-271 95-202 (313)
240 PF12061 DUF3542: Protein of u 97.0 0.0012 2.5E-08 58.4 5.0 77 11-94 296-372 (402)
241 COG1618 Predicted nucleotide k 97.0 0.001 2.2E-08 53.4 4.2 24 179-202 6-29 (179)
242 COG1121 ZnuC ABC-type Mn/Zn tr 97.0 0.0044 9.6E-08 54.1 8.4 124 177-302 29-203 (254)
243 PRK13531 regulatory ATPase Rav 97.0 0.0012 2.6E-08 62.9 5.3 44 157-202 20-63 (498)
244 cd03229 ABC_Class3 This class 97.0 0.0015 3.2E-08 54.5 5.4 122 177-302 25-165 (178)
245 PRK09270 nucleoside triphospha 96.9 0.0082 1.8E-07 52.2 10.2 27 176-202 31-57 (229)
246 PRK07132 DNA polymerase III su 96.9 0.047 1E-06 49.4 15.1 159 166-342 5-177 (299)
247 PRK06921 hypothetical protein; 96.9 0.005 1.1E-07 54.8 8.7 39 177-217 116-154 (266)
248 cd01124 KaiC KaiC is a circadi 96.9 0.005 1.1E-07 51.5 8.4 45 180-229 1-45 (187)
249 PTZ00301 uridine kinase; Provi 96.9 0.0033 7.1E-08 53.8 7.2 25 178-202 3-27 (210)
250 PLN03186 DNA repair protein RA 96.9 0.011 2.5E-07 54.4 11.1 94 177-271 122-229 (342)
251 PF12775 AAA_7: P-loop contain 96.9 0.0017 3.6E-08 58.1 5.5 36 166-202 22-57 (272)
252 PF13238 AAA_18: AAA domain; P 96.9 0.00088 1.9E-08 52.2 3.4 21 181-201 1-21 (129)
253 PRK14722 flhF flagellar biosyn 96.9 0.0063 1.4E-07 56.5 9.4 58 178-236 137-195 (374)
254 cd02025 PanK Pantothenate kina 96.9 0.0062 1.3E-07 52.6 8.9 23 180-202 1-23 (220)
255 TIGR00708 cobA cob(I)alamin ad 96.9 0.0051 1.1E-07 50.6 7.9 118 178-299 5-141 (173)
256 PRK06547 hypothetical protein; 96.9 0.0016 3.5E-08 54.0 5.0 34 169-202 6-39 (172)
257 TIGR02974 phageshock_pspF psp 96.9 0.0049 1.1E-07 56.7 8.7 44 159-202 1-46 (329)
258 TIGR03881 KaiC_arch_4 KaiC dom 96.9 0.011 2.4E-07 51.3 10.6 115 177-297 19-165 (229)
259 TIGR02236 recomb_radA DNA repa 96.9 0.0056 1.2E-07 55.9 9.0 93 177-271 94-203 (310)
260 TIGR02239 recomb_RAD51 DNA rep 96.9 0.0092 2E-07 54.5 10.3 94 177-271 95-202 (316)
261 PHA00729 NTP-binding motif con 96.9 0.0016 3.4E-08 56.0 4.9 35 168-202 7-41 (226)
262 PRK10463 hydrogenase nickel in 96.9 0.0055 1.2E-07 54.8 8.5 94 171-271 97-195 (290)
263 COG1102 Cmk Cytidylate kinase 96.9 0.0016 3.4E-08 52.4 4.5 44 180-237 2-45 (179)
264 PRK11823 DNA repair protein Ra 96.9 0.0054 1.2E-07 58.8 9.0 86 177-271 79-167 (446)
265 PRK05986 cob(I)alamin adenolsy 96.9 0.0042 9E-08 52.0 7.1 119 177-299 21-159 (191)
266 cd03222 ABC_RNaseL_inhibitor T 96.8 0.0024 5.1E-08 53.2 5.7 109 176-302 23-136 (177)
267 PRK04328 hypothetical protein; 96.8 0.0051 1.1E-07 54.3 7.9 88 177-270 22-138 (249)
268 cd00267 ABC_ATPase ABC (ATP-bi 96.8 0.003 6.4E-08 51.5 6.0 118 177-303 24-145 (157)
269 PLN03187 meiotic recombination 96.8 0.011 2.5E-07 54.3 10.4 94 177-271 125-232 (344)
270 COG0488 Uup ATPase components 96.8 0.006 1.3E-07 59.4 8.9 57 247-304 158-216 (530)
271 cd03281 ABC_MSH5_euk MutS5 hom 96.8 0.00095 2.1E-08 57.4 3.1 120 178-304 29-160 (213)
272 PTZ00035 Rad51 protein; Provis 96.8 0.021 4.5E-07 52.7 12.0 93 177-271 117-224 (337)
273 PF13671 AAA_33: AAA domain; P 96.8 0.0013 2.8E-08 52.5 3.6 23 180-202 1-23 (143)
274 TIGR01817 nifA Nif-specific re 96.8 0.0065 1.4E-07 59.8 9.2 47 156-202 195-243 (534)
275 COG0468 RecA RecA/RadA recombi 96.8 0.0084 1.8E-07 53.4 8.9 92 177-272 59-153 (279)
276 TIGR00390 hslU ATP-dependent p 96.8 0.0035 7.6E-08 58.7 6.7 46 157-202 12-71 (441)
277 PRK08533 flagellar accessory p 96.8 0.012 2.6E-07 51.2 9.8 49 177-230 23-71 (230)
278 PF07728 AAA_5: AAA domain (dy 96.8 0.0042 9.2E-08 49.3 6.4 41 181-227 2-42 (139)
279 PRK05342 clpX ATP-dependent pr 96.8 0.0046 1E-07 58.5 7.6 47 156-202 70-132 (412)
280 PRK12678 transcription termina 96.8 0.0038 8.2E-08 60.4 6.9 99 170-270 407-513 (672)
281 TIGR00235 udk uridine kinase. 96.8 0.0043 9.4E-08 53.1 6.8 26 177-202 5-30 (207)
282 TIGR00416 sms DNA repair prote 96.8 0.01 2.2E-07 57.0 9.9 86 177-271 93-181 (454)
283 TIGR03499 FlhF flagellar biosy 96.7 0.01 2.2E-07 53.4 9.4 87 178-269 194-281 (282)
284 KOG3347 Predicted nucleotide k 96.7 0.0025 5.5E-08 50.4 4.6 104 178-304 7-110 (176)
285 PRK07667 uridine kinase; Provi 96.7 0.0025 5.5E-08 53.9 5.1 37 166-202 3-41 (193)
286 COG1131 CcmA ABC-type multidru 96.7 0.011 2.5E-07 53.4 9.5 123 177-304 30-203 (293)
287 PF03308 ArgK: ArgK protein; 96.7 0.0047 1E-07 53.8 6.7 58 165-223 14-73 (266)
288 PF06745 KaiC: KaiC; InterPro 96.7 0.0027 6E-08 55.1 5.4 88 177-270 18-125 (226)
289 cd02019 NK Nucleoside/nucleoti 96.7 0.0015 3.2E-08 45.3 2.9 23 180-202 1-23 (69)
290 COG0563 Adk Adenylate kinase a 96.7 0.0031 6.6E-08 52.6 5.3 23 180-202 2-24 (178)
291 PRK14527 adenylate kinase; Pro 96.7 0.0028 6.2E-08 53.5 5.1 26 177-202 5-30 (191)
292 KOG0735 AAA+-type ATPase [Post 96.7 0.04 8.6E-07 54.4 13.2 163 158-343 668-869 (952)
293 KOG1969 DNA replication checkp 96.7 0.0046 1E-07 60.9 6.9 73 177-272 325-399 (877)
294 PRK05439 pantothenate kinase; 96.7 0.017 3.7E-07 52.4 10.2 83 176-261 84-166 (311)
295 TIGR00064 ftsY signal recognit 96.7 0.013 2.8E-07 52.4 9.4 39 177-218 71-109 (272)
296 PRK06762 hypothetical protein; 96.7 0.0017 3.8E-08 53.4 3.6 25 178-202 2-26 (166)
297 KOG0733 Nuclear AAA ATPase (VC 96.7 0.0028 6.2E-08 61.1 5.4 129 177-328 544-692 (802)
298 PRK03839 putative kinase; Prov 96.6 0.0017 3.6E-08 54.3 3.4 23 180-202 2-24 (180)
299 PRK05480 uridine/cytidine kina 96.6 0.0019 4.1E-08 55.4 3.7 26 177-202 5-30 (209)
300 TIGR01360 aden_kin_iso1 adenyl 96.6 0.0018 4E-08 54.2 3.6 26 177-202 2-27 (188)
301 PRK06002 fliI flagellum-specif 96.6 0.0075 1.6E-07 57.2 7.9 88 177-270 164-264 (450)
302 KOG0728 26S proteasome regulat 96.6 0.041 8.9E-07 47.6 11.5 145 159-327 148-330 (404)
303 cd02028 UMPK_like Uridine mono 96.6 0.0055 1.2E-07 51.2 6.3 23 180-202 1-23 (179)
304 PRK12597 F0F1 ATP synthase sub 96.6 0.01 2.3E-07 56.6 8.8 91 177-269 142-246 (461)
305 KOG0729 26S proteasome regulat 96.6 0.005 1.1E-07 53.6 6.0 90 158-271 178-281 (435)
306 PF08433 KTI12: Chromatin asso 96.6 0.0052 1.1E-07 54.7 6.4 24 179-202 2-25 (270)
307 PTZ00088 adenylate kinase 1; P 96.6 0.0025 5.4E-08 55.4 4.2 23 180-202 8-30 (229)
308 PF00154 RecA: recA bacterial 96.6 0.02 4.4E-07 52.0 10.1 88 177-272 52-143 (322)
309 cd03369 ABCC_NFT1 Domain 2 of 96.6 0.014 3E-07 49.9 8.8 26 177-202 33-58 (207)
310 TIGR01420 pilT_fam pilus retra 96.6 0.0043 9.2E-08 57.5 5.9 111 177-299 121-231 (343)
311 PRK13765 ATP-dependent proteas 96.6 0.0049 1.1E-07 61.4 6.6 74 157-235 31-104 (637)
312 TIGR02902 spore_lonB ATP-depen 96.6 0.0031 6.7E-08 61.9 5.1 46 157-202 65-110 (531)
313 PF13481 AAA_25: AAA domain; P 96.6 0.01 2.2E-07 50.0 7.7 91 178-271 32-152 (193)
314 TIGR00764 lon_rel lon-related 96.6 0.0084 1.8E-07 59.7 8.2 74 157-235 18-91 (608)
315 TIGR03878 thermo_KaiC_2 KaiC d 96.6 0.0097 2.1E-07 52.8 7.9 40 177-219 35-74 (259)
316 cd01135 V_A-ATPase_B V/A-type 96.5 0.018 3.9E-07 51.0 9.2 94 177-271 68-177 (276)
317 PRK14974 cell division protein 96.5 0.028 6.1E-07 51.7 10.8 57 177-236 139-196 (336)
318 TIGR00150 HI0065_YjeE ATPase, 96.5 0.0048 1E-07 48.6 5.0 38 165-202 7-46 (133)
319 TIGR02655 circ_KaiC circadian 96.5 0.02 4.3E-07 55.7 10.4 99 167-271 250-364 (484)
320 cd01125 repA Hexameric Replica 96.5 0.02 4.4E-07 50.1 9.6 23 180-202 3-25 (239)
321 PRK12724 flagellar biosynthesi 96.5 0.014 3E-07 54.9 8.8 25 178-202 223-247 (432)
322 cd01129 PulE-GspE PulE/GspE Th 96.5 0.011 2.5E-07 52.5 8.0 104 160-276 62-165 (264)
323 PF10236 DAP3: Mitochondrial r 96.5 0.073 1.6E-06 48.5 13.4 37 309-345 258-304 (309)
324 PRK15429 formate hydrogenlyase 96.5 0.0072 1.6E-07 61.4 7.5 46 157-202 376-423 (686)
325 PF07726 AAA_3: ATPase family 96.5 0.0028 6E-08 49.3 3.5 27 181-210 2-28 (131)
326 TIGR03575 selen_PSTK_euk L-ser 96.5 0.013 2.8E-07 53.8 8.4 22 181-202 2-23 (340)
327 PF00158 Sigma54_activat: Sigm 96.5 0.014 3E-07 48.1 7.9 70 159-232 1-72 (168)
328 COG4618 ArpD ABC-type protease 96.5 0.014 2.9E-07 55.5 8.5 26 177-202 361-386 (580)
329 PRK05201 hslU ATP-dependent pr 96.5 0.0073 1.6E-07 56.6 6.8 47 156-202 14-74 (443)
330 PRK05973 replicative DNA helic 96.5 0.025 5.4E-07 49.3 9.7 49 177-230 63-111 (237)
331 TIGR03522 GldA_ABC_ATP gliding 96.5 0.014 3E-07 53.1 8.6 26 177-202 27-52 (301)
332 PTZ00494 tuzin-like protein; P 96.5 0.091 2E-06 49.5 13.7 163 156-328 370-544 (664)
333 PRK08972 fliI flagellum-specif 96.5 0.01 2.2E-07 56.0 7.7 89 177-270 161-262 (444)
334 COG1703 ArgK Putative periplas 96.5 0.0051 1.1E-07 54.5 5.3 60 167-227 38-99 (323)
335 PF00910 RNA_helicase: RNA hel 96.5 0.0021 4.6E-08 48.7 2.7 22 181-202 1-22 (107)
336 PRK11889 flhF flagellar biosyn 96.5 0.021 4.5E-07 53.2 9.5 26 177-202 240-265 (436)
337 COG0467 RAD55 RecA-superfamily 96.5 0.008 1.7E-07 53.4 6.7 89 176-270 21-134 (260)
338 PRK00625 shikimate kinase; Pro 96.5 0.0025 5.3E-08 52.9 3.2 23 180-202 2-24 (173)
339 PRK09280 F0F1 ATP synthase sub 96.5 0.017 3.6E-07 55.1 9.0 92 177-270 143-248 (463)
340 PRK04040 adenylate kinase; Pro 96.5 0.003 6.4E-08 53.2 3.7 24 179-202 3-26 (188)
341 PRK08927 fliI flagellum-specif 96.4 0.016 3.4E-07 55.0 8.7 89 177-270 157-258 (442)
342 COG0714 MoxR-like ATPases [Gen 96.4 0.0085 1.9E-07 55.2 6.9 63 157-227 24-86 (329)
343 TIGR03498 FliI_clade3 flagella 96.4 0.01 2.2E-07 56.0 7.5 90 177-270 139-240 (418)
344 cd03217 ABC_FeS_Assembly ABC-t 96.4 0.0082 1.8E-07 51.1 6.3 25 177-201 25-49 (200)
345 PRK05922 type III secretion sy 96.4 0.017 3.6E-07 54.7 8.8 90 176-270 155-257 (434)
346 TIGR01359 UMP_CMP_kin_fam UMP- 96.4 0.0024 5.1E-08 53.4 2.9 23 180-202 1-23 (183)
347 PF00006 ATP-synt_ab: ATP synt 96.4 0.019 4.1E-07 49.3 8.4 88 177-269 14-114 (215)
348 cd01136 ATPase_flagellum-secre 96.4 0.021 4.5E-07 52.2 9.0 89 177-270 68-169 (326)
349 PRK00131 aroK shikimate kinase 96.4 0.0032 7E-08 52.0 3.6 25 178-202 4-28 (175)
350 TIGR01069 mutS2 MutS2 family p 96.4 0.0041 8.8E-08 63.6 4.9 25 177-201 321-345 (771)
351 cd02027 APSK Adenosine 5'-phos 96.4 0.023 4.9E-07 45.9 8.4 23 180-202 1-23 (149)
352 COG2274 SunT ABC-type bacterio 96.4 0.19 4.2E-06 50.9 16.5 27 176-202 497-523 (709)
353 COG4088 Predicted nucleotide k 96.4 0.0036 7.8E-08 52.4 3.5 24 179-202 2-25 (261)
354 PRK12723 flagellar biosynthesi 96.4 0.031 6.8E-07 52.4 10.2 59 178-236 174-234 (388)
355 PF13086 AAA_11: AAA domain; P 96.4 0.0071 1.5E-07 52.2 5.7 53 180-232 19-75 (236)
356 COG1428 Deoxynucleoside kinase 96.3 0.0032 7E-08 53.0 3.2 25 178-202 4-28 (216)
357 PF03205 MobB: Molybdopterin g 96.3 0.0076 1.6E-07 48.1 5.2 39 179-219 1-39 (140)
358 COG0396 sufC Cysteine desulfur 96.3 0.015 3.3E-07 49.6 7.2 61 248-310 150-216 (251)
359 TIGR02030 BchI-ChlI magnesium 96.3 0.0056 1.2E-07 56.3 5.0 46 157-202 4-49 (337)
360 PF01583 APS_kinase: Adenylyls 96.3 0.0057 1.2E-07 49.5 4.5 25 178-202 2-26 (156)
361 PRK06217 hypothetical protein; 96.3 0.0033 7.1E-08 52.7 3.3 23 180-202 3-25 (183)
362 PRK12726 flagellar biosynthesi 96.3 0.036 7.9E-07 51.4 10.2 90 177-271 205-296 (407)
363 cd02023 UMPK Uridine monophosp 96.3 0.0028 6E-08 53.8 2.8 23 180-202 1-23 (198)
364 PRK08149 ATP synthase SpaL; Va 96.3 0.023 5E-07 53.8 9.1 89 177-270 150-251 (428)
365 PF05970 PIF1: PIF1-like helic 96.3 0.011 2.3E-07 55.3 6.9 38 165-202 9-46 (364)
366 PRK10875 recD exonuclease V su 96.3 0.0088 1.9E-07 59.4 6.5 55 178-232 167-221 (615)
367 PRK05917 DNA polymerase III su 96.3 0.1 2.2E-06 46.8 12.6 142 165-324 5-168 (290)
368 TIGR02322 phosphon_PhnN phosph 96.3 0.0036 7.9E-08 52.1 3.3 24 179-202 2-25 (179)
369 smart00534 MUTSac ATPase domai 96.3 0.0019 4E-08 54.3 1.5 117 180-304 1-128 (185)
370 PRK09519 recA DNA recombinatio 96.3 0.019 4E-07 58.3 8.7 87 177-271 59-149 (790)
371 cd03282 ABC_MSH4_euk MutS4 hom 96.3 0.0037 8E-08 53.4 3.3 119 178-305 29-158 (204)
372 PRK00279 adk adenylate kinase; 96.3 0.0078 1.7E-07 51.8 5.3 23 180-202 2-24 (215)
373 cd00227 CPT Chloramphenicol (C 96.3 0.0042 9E-08 51.6 3.4 25 178-202 2-26 (175)
374 PF13245 AAA_19: Part of AAA d 96.2 0.012 2.7E-07 41.5 5.3 26 177-202 9-34 (76)
375 PRK05022 anaerobic nitric oxid 96.2 0.019 4.1E-07 56.2 8.5 61 157-220 187-249 (509)
376 KOG2035 Replication factor C, 96.2 0.015 3.2E-07 51.0 6.7 171 158-343 14-221 (351)
377 PRK15453 phosphoribulokinase; 96.2 0.031 6.8E-07 49.7 8.9 80 177-259 4-89 (290)
378 TIGR03305 alt_F1F0_F1_bet alte 96.2 0.019 4.1E-07 54.6 8.0 92 177-270 137-242 (449)
379 cd02021 GntK Gluconate kinase 96.2 0.0036 7.8E-08 50.5 2.8 23 180-202 1-23 (150)
380 cd01132 F1_ATPase_alpha F1 ATP 96.2 0.025 5.5E-07 50.1 8.2 91 177-272 68-173 (274)
381 PRK13407 bchI magnesium chelat 96.2 0.0061 1.3E-07 55.9 4.5 46 157-202 8-53 (334)
382 cd01122 GP4d_helicase GP4d_hel 96.2 0.043 9.4E-07 48.9 10.0 51 177-231 29-79 (271)
383 PF00625 Guanylate_kin: Guanyl 96.2 0.0076 1.6E-07 50.5 4.8 36 178-216 2-37 (183)
384 PTZ00185 ATPase alpha subunit; 96.2 0.037 8.1E-07 53.1 9.8 94 177-271 188-300 (574)
385 PRK11160 cysteine/glutathione 96.2 0.023 4.9E-07 56.6 8.9 27 176-202 364-390 (574)
386 cd02029 PRK_like Phosphoribulo 96.2 0.021 4.5E-07 50.4 7.6 79 180-261 1-85 (277)
387 PF06414 Zeta_toxin: Zeta toxi 96.2 0.0054 1.2E-07 52.1 3.9 92 176-272 13-104 (199)
388 PRK15064 ABC transporter ATP-b 96.2 0.022 4.7E-07 56.2 8.6 26 177-202 26-51 (530)
389 cd02020 CMPK Cytidine monophos 96.2 0.0041 8.9E-08 49.7 3.0 23 180-202 1-23 (147)
390 cd00984 DnaB_C DnaB helicase C 96.2 0.038 8.2E-07 48.3 9.3 51 177-231 12-62 (242)
391 PF03266 NTPase_1: NTPase; In 96.2 0.0045 9.8E-08 51.0 3.2 22 181-202 2-23 (168)
392 CHL00081 chlI Mg-protoporyphyr 96.2 0.006 1.3E-07 56.2 4.3 46 157-202 17-62 (350)
393 KOG0652 26S proteasome regulat 96.2 0.018 3.9E-07 50.1 6.8 53 150-202 162-229 (424)
394 PRK13947 shikimate kinase; Pro 96.1 0.0048 1E-07 50.9 3.3 23 180-202 3-25 (171)
395 cd03213 ABCG_EPDR ABCG transpo 96.1 0.015 3.3E-07 49.2 6.4 26 177-202 34-59 (194)
396 PRK09099 type III secretion sy 96.1 0.025 5.4E-07 53.8 8.4 90 177-270 162-263 (441)
397 PRK13949 shikimate kinase; Pro 96.1 0.0045 9.8E-08 51.1 3.1 23 180-202 3-25 (169)
398 cd03243 ABC_MutS_homologs The 96.1 0.0032 7E-08 53.6 2.3 23 179-201 30-52 (202)
399 KOG0737 AAA+-type ATPase [Post 96.1 0.2 4.3E-06 45.9 13.5 49 158-209 93-155 (386)
400 PRK00889 adenylylsulfate kinas 96.1 0.0063 1.4E-07 50.5 3.9 26 177-202 3-28 (175)
401 PRK14530 adenylate kinase; Pro 96.1 0.0051 1.1E-07 53.0 3.4 24 179-202 4-27 (215)
402 PRK06936 type III secretion sy 96.1 0.026 5.7E-07 53.5 8.3 89 177-270 161-262 (439)
403 TIGR01039 atpD ATP synthase, F 96.1 0.038 8.2E-07 52.6 9.2 92 177-270 142-247 (461)
404 PF06309 Torsin: Torsin; Inte 96.1 0.014 3E-07 45.2 5.2 46 157-202 25-77 (127)
405 TIGR02868 CydC thiol reductant 96.1 0.018 3.9E-07 56.7 7.4 27 176-202 359-385 (529)
406 cd02024 NRK1 Nicotinamide ribo 96.1 0.0047 1E-07 51.8 2.9 23 180-202 1-23 (187)
407 TIGR01351 adk adenylate kinase 96.1 0.0094 2E-07 51.1 4.8 22 181-202 2-23 (210)
408 TIGR03263 guanyl_kin guanylate 96.1 0.0048 1E-07 51.4 2.9 24 179-202 2-25 (180)
409 PF08298 AAA_PrkA: PrkA AAA do 96.1 0.01 2.3E-07 54.1 5.2 46 157-202 61-112 (358)
410 COG0003 ArsA Predicted ATPase 96.0 0.012 2.7E-07 53.5 5.7 48 178-228 2-49 (322)
411 PF03193 DUF258: Protein of un 96.0 0.0091 2E-07 48.6 4.3 36 164-202 24-59 (161)
412 PRK05800 cobU adenosylcobinami 96.0 0.035 7.6E-07 45.9 7.9 82 180-269 3-85 (170)
413 PRK06995 flhF flagellar biosyn 96.0 0.04 8.7E-07 53.0 9.3 25 178-202 256-280 (484)
414 PRK14721 flhF flagellar biosyn 96.0 0.058 1.3E-06 51.0 10.2 25 178-202 191-215 (420)
415 PF08477 Miro: Miro-like prote 96.0 0.0061 1.3E-07 46.8 3.2 22 181-202 2-23 (119)
416 PRK10416 signal recognition pa 96.0 0.039 8.4E-07 50.5 8.8 26 177-202 113-138 (318)
417 PRK07721 fliI flagellum-specif 96.0 0.032 6.9E-07 53.2 8.5 91 176-270 156-258 (438)
418 PRK00300 gmk guanylate kinase; 96.0 0.0059 1.3E-07 52.1 3.3 26 177-202 4-29 (205)
419 KOG2170 ATPase of the AAA+ sup 96.0 0.025 5.5E-07 50.2 7.1 101 157-272 82-190 (344)
420 PRK05688 fliI flagellum-specif 96.0 0.028 6.1E-07 53.5 8.0 89 177-270 167-268 (451)
421 PRK07196 fliI flagellum-specif 96.0 0.029 6.3E-07 53.2 8.1 91 176-271 153-256 (434)
422 PRK11147 ABC transporter ATPas 96.0 0.042 9.1E-07 55.4 9.7 26 177-202 28-53 (635)
423 PRK06793 fliI flagellum-specif 96.0 0.032 6.8E-07 52.9 8.2 92 177-272 155-258 (432)
424 cd00464 SK Shikimate kinase (S 96.0 0.0062 1.4E-07 49.2 3.2 22 181-202 2-23 (154)
425 COG3640 CooC CO dehydrogenase 96.0 0.016 3.5E-07 49.6 5.7 41 180-222 2-42 (255)
426 PRK07276 DNA polymerase III su 96.0 0.24 5.2E-06 44.5 13.4 168 165-344 10-191 (290)
427 TIGR01425 SRP54_euk signal rec 96.0 0.038 8.3E-07 52.3 8.7 26 177-202 99-124 (429)
428 PRK05703 flhF flagellar biosyn 96.0 0.035 7.5E-07 52.9 8.5 41 178-219 221-261 (424)
429 PF05659 RPW8: Arabidopsis bro 95.9 0.079 1.7E-06 42.5 9.2 109 8-132 6-114 (147)
430 TIGR00073 hypB hydrogenase acc 95.9 0.0091 2E-07 51.1 4.1 30 173-202 17-46 (207)
431 PRK10751 molybdopterin-guanine 95.9 0.0081 1.8E-07 49.6 3.6 26 177-202 5-30 (173)
432 PRK07594 type III secretion sy 95.9 0.029 6.3E-07 53.2 7.8 90 176-270 153-255 (433)
433 cd01672 TMPK Thymidine monopho 95.9 0.021 4.5E-07 48.1 6.3 23 180-202 2-24 (200)
434 KOG1051 Chaperone HSP104 and r 95.9 0.04 8.6E-07 56.4 9.1 102 157-272 562-672 (898)
435 PRK09302 circadian clock prote 95.9 0.057 1.2E-06 52.9 10.1 88 177-270 272-373 (509)
436 KOG0927 Predicted transporter 95.9 0.029 6.3E-07 53.6 7.6 122 177-300 415-568 (614)
437 PRK13545 tagH teichoic acids e 95.9 0.06 1.3E-06 52.3 9.9 26 177-202 49-74 (549)
438 cd00071 GMPK Guanosine monopho 95.9 0.0069 1.5E-07 48.2 3.0 23 180-202 1-23 (137)
439 TIGR01313 therm_gnt_kin carboh 95.9 0.0054 1.2E-07 50.2 2.5 22 181-202 1-22 (163)
440 PRK10636 putative ABC transpor 95.9 0.051 1.1E-06 54.7 9.9 26 177-202 26-51 (638)
441 PRK11388 DNA-binding transcrip 95.9 0.024 5.1E-07 57.2 7.6 46 157-202 325-372 (638)
442 TIGR01040 V-ATPase_V1_B V-type 95.9 0.041 8.8E-07 52.3 8.5 93 177-270 140-257 (466)
443 COG1936 Predicted nucleotide k 95.9 0.0061 1.3E-07 49.7 2.7 20 180-199 2-21 (180)
444 COG1124 DppF ABC-type dipeptid 95.9 0.01 2.2E-07 51.1 4.1 26 177-202 32-57 (252)
445 PRK10078 ribose 1,5-bisphospho 95.9 0.0065 1.4E-07 51.0 3.0 24 179-202 3-26 (186)
446 KOG0727 26S proteasome regulat 95.9 0.026 5.7E-07 48.8 6.6 44 159-202 157-213 (408)
447 PF02374 ArsA_ATPase: Anion-tr 95.9 0.012 2.5E-07 53.6 4.8 24 179-202 2-25 (305)
448 cd01130 VirB11-like_ATPase Typ 95.9 0.013 2.8E-07 49.3 4.7 105 166-278 14-118 (186)
449 PRK13975 thymidylate kinase; P 95.9 0.008 1.7E-07 50.8 3.5 24 179-202 3-26 (196)
450 TIGR03496 FliI_clade1 flagella 95.9 0.035 7.5E-07 52.5 8.0 89 177-270 136-237 (411)
451 TIGR03600 phage_DnaB phage rep 95.9 0.67 1.5E-05 44.2 17.0 53 177-233 193-245 (421)
452 cd03227 ABC_Class2 ABC-type Cl 95.9 0.036 7.7E-07 45.4 7.2 23 179-201 22-44 (162)
453 PRK14529 adenylate kinase; Pro 95.8 0.04 8.8E-07 47.5 7.7 82 181-271 3-87 (223)
454 PF03215 Rad17: Rad17 cell cyc 95.8 0.016 3.6E-07 56.3 5.9 54 158-216 20-78 (519)
455 CHL00206 ycf2 Ycf2; Provisiona 95.8 0.053 1.2E-06 59.4 10.0 26 177-202 1629-1654(2281)
456 PRK06851 hypothetical protein; 95.8 0.24 5.3E-06 46.0 13.2 55 160-220 200-254 (367)
457 cd03287 ABC_MSH3_euk MutS3 hom 95.8 0.0069 1.5E-07 52.4 2.9 121 177-304 30-160 (222)
458 PRK13409 putative ATPase RIL; 95.8 0.037 8.1E-07 55.1 8.5 26 177-202 98-123 (590)
459 PRK05057 aroK shikimate kinase 95.8 0.0083 1.8E-07 49.7 3.4 24 179-202 5-28 (172)
460 PRK12339 2-phosphoglycerate ki 95.8 0.009 2E-07 50.6 3.6 25 178-202 3-27 (197)
461 COG1126 GlnQ ABC-type polar am 95.8 0.011 2.4E-07 50.0 4.0 124 177-304 27-202 (240)
462 TIGR01650 PD_CobS cobaltochela 95.8 0.03 6.5E-07 50.9 7.1 43 158-202 46-88 (327)
463 PRK05748 replicative DNA helic 95.8 0.93 2E-05 43.7 17.8 52 177-232 202-253 (448)
464 cd00046 DEXDc DEAD-like helica 95.8 0.028 6.1E-07 43.7 6.3 37 180-217 2-38 (144)
465 PRK13948 shikimate kinase; Pro 95.8 0.0092 2E-07 49.9 3.5 26 177-202 9-34 (182)
466 PF03029 ATP_bind_1: Conserved 95.8 0.014 3E-07 51.1 4.8 33 183-218 1-33 (238)
467 cd00544 CobU Adenosylcobinamid 95.8 0.064 1.4E-06 44.2 8.5 80 180-269 1-82 (169)
468 TIGR02546 III_secr_ATP type II 95.8 0.057 1.2E-06 51.3 9.2 90 176-270 143-245 (422)
469 TIGR01026 fliI_yscN ATPase Fli 95.8 0.042 9.2E-07 52.4 8.3 89 177-270 162-263 (440)
470 TIGR01041 ATP_syn_B_arch ATP s 95.8 0.045 9.8E-07 52.3 8.4 93 177-270 140-248 (458)
471 PRK09536 btuD corrinoid ABC tr 95.8 0.075 1.6E-06 50.3 9.8 26 177-202 28-53 (402)
472 COG0465 HflB ATP-dependent Zn 95.8 0.02 4.4E-07 56.0 6.1 93 157-272 150-254 (596)
473 PRK03846 adenylylsulfate kinas 95.7 0.011 2.3E-07 50.3 3.8 27 176-202 22-48 (198)
474 TIGR00041 DTMP_kinase thymidyl 95.7 0.028 6.2E-07 47.4 6.4 24 179-202 4-27 (195)
475 PRK08760 replicative DNA helic 95.7 0.8 1.7E-05 44.4 16.9 52 177-232 228-279 (476)
476 COG2401 ABC-type ATPase fused 95.7 0.022 4.8E-07 52.8 5.8 150 159-308 373-578 (593)
477 PLN02200 adenylate kinase fami 95.7 0.01 2.3E-07 51.7 3.7 25 178-202 43-67 (234)
478 TIGR00665 DnaB replicative DNA 95.7 1.1 2.3E-05 43.1 17.7 52 177-232 194-245 (434)
479 COG1419 FlhF Flagellar GTP-bin 95.7 0.13 2.9E-06 47.8 10.9 72 164-236 185-261 (407)
480 TIGR03497 FliI_clade2 flagella 95.7 0.045 9.7E-07 51.8 8.0 90 176-270 135-237 (413)
481 PRK14532 adenylate kinase; Pro 95.7 0.0088 1.9E-07 50.2 3.0 22 181-202 3-24 (188)
482 PRK14737 gmk guanylate kinase; 95.7 0.01 2.2E-07 49.9 3.3 25 178-202 4-28 (186)
483 KOG0738 AAA+-type ATPase [Post 95.7 0.021 4.6E-07 52.4 5.5 45 158-202 213-269 (491)
484 PRK13657 cyclic beta-1,2-gluca 95.7 0.038 8.2E-07 55.2 7.9 26 177-202 360-385 (588)
485 COG3854 SpoIIIAA ncharacterize 95.7 0.039 8.4E-07 47.2 6.6 116 169-299 128-254 (308)
486 cd00820 PEPCK_HprK Phosphoenol 95.7 0.011 2.4E-07 44.6 3.0 22 178-199 15-36 (107)
487 CHL00060 atpB ATP synthase CF1 95.7 0.058 1.3E-06 51.7 8.6 92 177-270 160-272 (494)
488 COG5635 Predicted NTPase (NACH 95.7 0.014 3E-07 60.5 4.9 140 178-324 222-374 (824)
489 PRK13409 putative ATPase RIL; 95.6 0.047 1E-06 54.4 8.4 122 177-303 364-519 (590)
490 cd01428 ADK Adenylate kinase ( 95.6 0.0095 2.1E-07 50.2 3.1 22 181-202 2-23 (194)
491 PRK14723 flhF flagellar biosyn 95.6 0.074 1.6E-06 53.8 9.7 25 178-202 185-209 (767)
492 cd03285 ABC_MSH2_euk MutS2 hom 95.6 0.017 3.6E-07 50.1 4.6 120 177-303 29-158 (222)
493 PRK13946 shikimate kinase; Pro 95.6 0.011 2.5E-07 49.5 3.4 25 178-202 10-34 (184)
494 COG1116 TauB ABC-type nitrate/ 95.6 0.0098 2.1E-07 51.5 3.0 96 177-272 28-160 (248)
495 COG3910 Predicted ATPase [Gene 95.6 0.044 9.6E-07 45.4 6.6 26 177-202 36-61 (233)
496 COG0703 AroK Shikimate kinase 95.6 0.012 2.6E-07 48.2 3.4 24 179-202 3-26 (172)
497 TIGR02857 CydD thiol reductant 95.6 0.06 1.3E-06 53.0 9.0 27 176-202 346-372 (529)
498 PF13521 AAA_28: AAA domain; P 95.6 0.0099 2.1E-07 48.7 2.9 21 181-201 2-22 (163)
499 PRK00409 recombination and DNA 95.6 0.069 1.5E-06 54.9 9.5 120 177-303 326-455 (782)
500 PRK04182 cytidylate kinase; Pr 95.6 0.011 2.5E-07 49.0 3.3 23 180-202 2-24 (180)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-46 Score=377.92 Aligned_cols=324 Identities=35% Similarity=0.638 Sum_probs=276.1
Q ss_pred HHhhHHHHhhhhhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038882 16 IFSHCLNCTERQVAFISELEDNLDSLQAEMQKLIEVRDDVMTRVIIAEQQQMKRLNQVQGWLKRVEAVEAEVRELQRIQT 95 (347)
Q Consensus 16 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~Wl~~l~~~~~d~ed~ld~~~ 95 (347)
.++++.+++.+++..+.+.++.+..|+++|..|+.+++|++++ +. ....+..|...+++++|++||.++.|.
T Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~-------~~-~~~~~~~~~e~~~~~~~~~e~~~~~~~ 79 (889)
T KOG4658|consen 8 GVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAK-------RD-DLERRVNWEEDVGDLVYLAEDIIWLFL 79 (889)
T ss_pred ehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhh-------cc-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888889999999999999999999999996543 22 236788999999999999999999876
Q ss_pred HHhh----------------hhhccCcCCCCchhhhhhhHHHHHHHHHHHHHHccCCccccccccCCCCCccccCCCCcc
Q 038882 96 QAIN----------------NLCLGGYCSKKCISSYKFGKEVSTKLKVLADLKGEGDFKHIAERTAKAPLIEEMPIEPRI 159 (347)
Q Consensus 96 ~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (347)
.+.. +.|..++|..+....|.+++++.+++++++.+..+..+........+......+|..+..
T Consensus 80 v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 159 (889)
T KOG4658|consen 80 VEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSES 159 (889)
T ss_pred HHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCccc
Confidence 5432 234456677777888899999999999999998877666555321111333444444444
Q ss_pred -cchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCC
Q 038882 160 -IGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFS 238 (347)
Q Consensus 160 -vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 238 (347)
||.+..++++.+.|.+++..+++|+||||+||||||+.++|+...+..+|+.++||+||+.++...++.+|+..++...
T Consensus 160 ~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~ 239 (889)
T KOG4658|consen 160 DVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLD 239 (889)
T ss_pred cccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCC
Confidence 9999999999999999888999999999999999999999998339999999999999999999999999999998766
Q ss_pred ccccccChHHHHHHHHHHhcCCcEEEEEeCCCCcccccccccCCCCCCCCcEEEEecCChhHHhh-cCCCceeecCCCCH
Q 038882 239 ESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPVDLTKVGVPIPNSTNASKVLFTTRYKEVCGK-MEAHKKLRVECLTA 317 (347)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~-~~~~~~~~l~~L~~ 317 (347)
......+..+++..+.+.|+++||+|||||||+..+|+.+..++|...+||+|++|||+..||.. ++....++++.|+.
T Consensus 240 ~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~ 319 (889)
T KOG4658|consen 240 EEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTP 319 (889)
T ss_pred cccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCc
Confidence 66566666899999999999999999999999999999999999999999999999999999998 77778999999999
Q ss_pred HHHHHHHhhhhC----------hhhHHHHHHHhCCcccCC
Q 038882 318 DEAWMLFNVKVG----------EDTIDKIFVKCCCHTFVI 347 (347)
Q Consensus 318 ~ea~~Lf~~~~~----------~~~~~~I~~~~~G~PLAi 347 (347)
++||+||++.++ ++.+++++++|+|+|||+
T Consensus 320 ~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl 359 (889)
T KOG4658|consen 320 EEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLAL 359 (889)
T ss_pred cccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHH
Confidence 999999999986 456899999999999996
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=5.3e-34 Score=257.71 Aligned_cols=185 Identities=32% Similarity=0.567 Sum_probs=153.1
Q ss_pred hhhhHHHHHHHhhc--cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCc
Q 038882 162 QESIFDDVWRCIIE--EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSE 239 (347)
Q Consensus 162 R~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 239 (347)
|+.++++|.+.|.. ++.++|+|+||||+||||||..++++. ..+.+|+.++|+.++...+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 78999999999998 789999999999999999999999986 578999999999999999999999999999987543
Q ss_pred cc-cccChHHHHHHHHHHhcCCcEEEEEeCCCCcccccccccCCCCCCCCcEEEEecCChhHHhhcCC-CceeecCCCCH
Q 038882 240 SW-KNKSLVEKSCAIFKILSNKKFVLLLDDVWEPVDLTKVGVPIPNSTNASKVLFTTRYKEVCGKMEA-HKKLRVECLTA 317 (347)
Q Consensus 240 ~~-~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~~~~-~~~~~l~~L~~ 317 (347)
.. ...+..+....+.+.|+++++||||||||+...|+.+...++....||+||+|||+..++..++. ...+++++|+.
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred ccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 33 56677889999999999999999999999999999988888877789999999999998876654 56899999999
Q ss_pred HHHHHHHhhhhC----------hhhHHHHHHHhCCcccCC
Q 038882 318 DEAWMLFNVKVG----------EDTIDKIFVKCCCHTFVI 347 (347)
Q Consensus 318 ~ea~~Lf~~~~~----------~~~~~~I~~~~~G~PLAi 347 (347)
++|++||.+.++ ++.+.+|+++|+|+||||
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal 199 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLAL 199 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccc
Confidence 999999999875 346889999999999985
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.94 E-value=2.9e-26 Score=241.19 Aligned_cols=183 Identities=17% Similarity=0.208 Sum_probs=142.6
Q ss_pred CcccchhhhHHHHHHHhhc--cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEe---cCC-----------
Q 038882 157 PRIIGQESIFDDVWRCIIE--EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVV---SKD----------- 220 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v---s~~----------- 220 (347)
+.+|||+..++++..+|.- ++.++|+|+||||+||||||+.+|+.. ..+|+..+|+.. +..
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccccc
Confidence 5689999999999988753 478999999999999999999999987 678998888742 111
Q ss_pred CC-hHHHHHHHHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCcccccccccCCCCCCCCcEEEEecCChh
Q 038882 221 LN-LEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPVDLTKVGVPIPNSTNASKVLFTTRYKE 299 (347)
Q Consensus 221 ~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~ 299 (347)
++ ...+.++++.++..... ..... ...+++.++++|+||||||||+...|+.+.....+.++||+||||||+..
T Consensus 261 ~~~~~~l~~~~l~~il~~~~-~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~ 335 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKD-IKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKH 335 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCC-cccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHH
Confidence 01 12233444444321110 00111 24577889999999999999999899888766666678999999999999
Q ss_pred HHhhcCCCceeecCCCCHHHHHHHHhhhhC---------hhhHHHHHHHhCCcccCC
Q 038882 300 VCGKMEAHKKLRVECLTADEAWMLFNVKVG---------EDTIDKIFVKCCCHTFVI 347 (347)
Q Consensus 300 v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~---------~~~~~~I~~~~~G~PLAi 347 (347)
++..++..+.|+++.|++++||+||++.++ .+.+.+|+++|+|+||||
T Consensus 336 vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl 392 (1153)
T PLN03210 336 FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGL 392 (1153)
T ss_pred HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHH
Confidence 988777778999999999999999999885 245788999999999996
No 4
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.50 E-value=6e-14 Score=122.44 Aligned_cols=183 Identities=16% Similarity=0.216 Sum_probs=98.9
Q ss_pred ccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHH--------
Q 038882 159 IIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDI-------- 230 (347)
Q Consensus 159 ~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i-------- 230 (347)
|+||+++++.|.+++..+....+.|+|+.|+|||+|++.+.+.. +..-..++|+........ .....+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~---~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL---KEKGYKVVYIDFLEESNE-SSLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC---T--EECCCHHCCTTBSHH-HHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh---hhcCCcEEEEecccchhh-hHHHHHHHHHHHHH
Confidence 79999999999999988778899999999999999999999875 221113444444333322 112221
Q ss_pred ------HHhcCCCCc-c---ccccChHHHHHHHHHHhc--CCcEEEEEeCCCCcc-cc---cc-------cccCCCCCCC
Q 038882 231 ------GKKIDLFSE-S---WKNKSLVEKSCAIFKILS--NKKFVLLLDDVWEPV-DL---TK-------VGVPIPNSTN 287 (347)
Q Consensus 231 ------~~~l~~~~~-~---~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~-~~---~~-------l~~~l~~~~~ 287 (347)
...+....- . ............+.+.+. +++++||+||+.... .. .. +....... .
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~ 155 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQ-Q 155 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----T
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcccc-C
Confidence 111111000 0 011122333344444443 345999999996654 11 11 11122223 3
Q ss_pred CcEEEEecCChhHHhh--------cCCCceeecCCCCHHHHHHHHhhh--------hChhhHHHHHHHhCCcccC
Q 038882 288 ASKVLFTTRYKEVCGK--------MEAHKKLRVECLTADEAWMLFNVK--------VGEDTIDKIFVKCCCHTFV 346 (347)
Q Consensus 288 gs~iiiTtR~~~v~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~--------~~~~~~~~I~~~~~G~PLA 346 (347)
...+|+++........ .+....+.+++|+.+++++++... ..++..++|+..+||+|..
T Consensus 156 ~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~ 230 (234)
T PF01637_consen 156 NVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRY 230 (234)
T ss_dssp TEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHH
T ss_pred CceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHH
Confidence 3445555554444332 222345899999999999999984 2577889999999999964
No 5
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.43 E-value=6.8e-12 Score=118.51 Aligned_cols=183 Identities=16% Similarity=0.142 Sum_probs=122.7
Q ss_pred CCcccchhhhHHHHHHHhhc----cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHH
Q 038882 156 EPRIIGQESIFDDVWRCIIE----EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIG 231 (347)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 231 (347)
++.|+||++++++|...+.+ .....+.|+|++|+|||++++.++++. ......-..+++++....+...++..|+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l-~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL-EEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 47899999999999998854 244668899999999999999999987 3333234567777777778889999999
Q ss_pred HhcCCCCccccccChHHHHHHHHHHhc--CCcEEEEEeCCCCcc------cccccccCCCCCCCCcE--EEEecCChhHH
Q 038882 232 KKIDLFSESWKNKSLVEKSCAIFKILS--NKKFVLLLDDVWEPV------DLTKVGVPIPNSTNASK--VLFTTRYKEVC 301 (347)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~------~~~~l~~~l~~~~~gs~--iiiTtR~~~v~ 301 (347)
.++..........+..+....+.+.+. +++.+||||+++... .+..+...+. ...+++ +|.++....+.
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~-~~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHE-EYPGARIGVIGISSDLTFL 186 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhh-ccCCCeEEEEEEECCcchh
Confidence 998652222223455667777777775 456899999997642 1222222111 122333 56666654433
Q ss_pred hhcC-------CCceeecCCCCHHHHHHHHhhhh---------ChhhHHHHHHHh
Q 038882 302 GKME-------AHKKLRVECLTADEAWMLFNVKV---------GEDTIDKIFVKC 340 (347)
Q Consensus 302 ~~~~-------~~~~~~l~~L~~~ea~~Lf~~~~---------~~~~~~~I~~~~ 340 (347)
..+. ....+.+++++.++..+++..++ .++.++.|.+.+
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~ 241 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLT 241 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHH
Confidence 2221 12467999999999999998764 134556666665
No 6
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.40 E-value=2.9e-11 Score=108.12 Aligned_cols=164 Identities=15% Similarity=0.223 Sum_probs=104.0
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHH
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFK 255 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 255 (347)
...+.+.|+|++|+|||||++.+++.. .. ..+ ..+|+ +....+..+++..|+..++.+.. ..+.......+..
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l-~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~~ 113 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRL-DQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE---GRDKAALLRELED 113 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhc-CC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHH
Confidence 345689999999999999999999876 21 111 22333 33445778899999998876422 2222333333333
Q ss_pred H-----hcCCcEEEEEeCCCCcc--cccccccC--C-CCCCCCcEEEEecCChhHHhhcC----------CCceeecCCC
Q 038882 256 I-----LSNKKFVLLLDDVWEPV--DLTKVGVP--I-PNSTNASKVLFTTRYKEVCGKME----------AHKKLRVECL 315 (347)
Q Consensus 256 ~-----l~~kr~LlVlDdv~~~~--~~~~l~~~--l-~~~~~gs~iiiTtR~~~v~~~~~----------~~~~~~l~~L 315 (347)
. ..+++.+||+||++... .++.+... + ........|++|.... ....+. ....+.+++|
T Consensus 114 ~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l 192 (269)
T TIGR03015 114 FLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPL 192 (269)
T ss_pred HHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCC
Confidence 2 26788999999998753 33333211 1 1122233456665433 221111 1235789999
Q ss_pred CHHHHHHHHhhhh-----------ChhhHHHHHHHhCCcccCC
Q 038882 316 TADEAWMLFNVKV-----------GEDTIDKIFVKCCCHTFVI 347 (347)
Q Consensus 316 ~~~ea~~Lf~~~~-----------~~~~~~~I~~~~~G~PLAi 347 (347)
+.++..+++...+ .++.+..|++.|+|+|..|
T Consensus 193 ~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i 235 (269)
T TIGR03015 193 DREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLI 235 (269)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHH
Confidence 9999999998654 2567899999999999753
No 7
>PF05729 NACHT: NACHT domain
Probab=99.36 E-value=7.6e-12 Score=103.17 Aligned_cols=141 Identities=18% Similarity=0.288 Sum_probs=90.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhhhccCCC----CCEEEEEEecCCCChH---HHHHHHHHhcCCCCccccccChHHHHH
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKLCHERHD----FDIVIWVVVSKDLNLE---KVQEDIGKKIDLFSESWKNKSLVEKSC 251 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~----f~~~~wv~vs~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~ 251 (347)
+++.|+|.+|+||||+++.++... ..... +...+|++........ .+...|..+..... .....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~--- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL-AEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-----APIEE--- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH-HhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-----hhhHH---
Confidence 578999999999999999999888 33332 3466777765543322 34444444433211 11111
Q ss_pred HHHHHh-cCCcEEEEEeCCCCccc---------cccccc-CCCC-CCCCcEEEEecCChhH---HhhcCCCceeecCCCC
Q 038882 252 AIFKIL-SNKKFVLLLDDVWEPVD---------LTKVGV-PIPN-STNASKVLFTTRYKEV---CGKMEAHKKLRVECLT 316 (347)
Q Consensus 252 ~l~~~l-~~kr~LlVlDdv~~~~~---------~~~l~~-~l~~-~~~gs~iiiTtR~~~v---~~~~~~~~~~~l~~L~ 316 (347)
.+...+ +.++++||||++++... +..+.. .++. ...++++++|+|.... .........+.+.+|+
T Consensus 72 ~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 72 LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFS 151 (166)
T ss_pred HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCC
Confidence 222222 56899999999976532 122221 2222 3568999999998776 3333444589999999
Q ss_pred HHHHHHHHhhhh
Q 038882 317 ADEAWMLFNVKV 328 (347)
Q Consensus 317 ~~ea~~Lf~~~~ 328 (347)
+++..+++.+.+
T Consensus 152 ~~~~~~~~~~~f 163 (166)
T PF05729_consen 152 EEDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 8
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.34 E-value=7.2e-11 Score=110.40 Aligned_cols=173 Identities=14% Similarity=0.175 Sum_probs=112.1
Q ss_pred CCcccchhhhHHHHHHHhhc----cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCC---CEEEEEEecCCCChHHHHH
Q 038882 156 EPRIIGQESIFDDVWRCIIE----EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDF---DIVIWVVVSKDLNLEKVQE 228 (347)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f---~~~~wv~vs~~~~~~~~~~ 228 (347)
++.++||+++++.|..+|.+ .....+.|+|++|+|||++++.+++......... -..+|+++....+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 36799999999999999875 3446789999999999999999998762111111 2456788877777888999
Q ss_pred HHHHhcCC--CCccccccChHHHHHHHHHHhc--CCcEEEEEeCCCCcc-ccc----ccccCC-CCCC--CCcEEEEecC
Q 038882 229 DIGKKIDL--FSESWKNKSLVEKSCAIFKILS--NKKFVLLLDDVWEPV-DLT----KVGVPI-PNST--NASKVLFTTR 296 (347)
Q Consensus 229 ~i~~~l~~--~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~-~~~----~l~~~l-~~~~--~gs~iiiTtR 296 (347)
.|+.++.. ........+..+....+.+.+. +++++||||+++... ... .+.... .... ....+|.+|.
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 99998831 1111122344555666666664 567899999997762 111 221110 1111 2334555555
Q ss_pred ChhHHhhcC-------CCceeecCCCCHHHHHHHHhhhh
Q 038882 297 YKEVCGKME-------AHKKLRVECLTADEAWMLFNVKV 328 (347)
Q Consensus 297 ~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~~ 328 (347)
.......+. ....+.+++++.++..+++..++
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~ 212 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRA 212 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHH
Confidence 443322111 12468899999999999998775
No 9
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.26 E-value=5.9e-11 Score=123.75 Aligned_cols=182 Identities=13% Similarity=0.178 Sum_probs=116.5
Q ss_pred CCcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecC-CCChHHHHHHHHHhc
Q 038882 156 EPRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSK-DLNLEKVQEDIGKKI 234 (347)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l 234 (347)
.+.++-|..-++.|-.. ...+++.|.|++|.||||++..+.... +.++|+++.. ..++..++..++..+
T Consensus 13 ~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~-------~~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 13 LHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGK-------NNLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred ccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhC-------CCeEEEecCcccCCHHHHHHHHHHHH
Confidence 35668887655554321 357899999999999999999987532 2589999964 446677777777766
Q ss_pred CCCCcc-----------ccccChHHHHHHHHHHhc--CCcEEEEEeCCCCcc--cccccc-cCCCCCCCCcEEEEecCCh
Q 038882 235 DLFSES-----------WKNKSLVEKSCAIFKILS--NKKFVLLLDDVWEPV--DLTKVG-VPIPNSTNASKVLFTTRYK 298 (347)
Q Consensus 235 ~~~~~~-----------~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~--~~~~l~-~~l~~~~~gs~iiiTtR~~ 298 (347)
...... ....+.......+...+. +.+++|||||+.... ....+. ..+.....+.++|||||..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 83 QQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred HHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 421110 001122233333444433 689999999996542 112222 2223345667888999984
Q ss_pred hHH--hhc-CCCceeecC----CCCHHHHHHHHhhhhC----hhhHHHHHHHhCCcccCC
Q 038882 299 EVC--GKM-EAHKKLRVE----CLTADEAWMLFNVKVG----EDTIDKIFVKCCCHTFVI 347 (347)
Q Consensus 299 ~v~--~~~-~~~~~~~l~----~L~~~ea~~Lf~~~~~----~~~~~~I~~~~~G~PLAi 347 (347)
.-. ..+ .......+. +|+.+|+.+||....+ .+.+..|++.|+|+|+++
T Consensus 163 ~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~~~~~~~l~~~t~Gwp~~l 222 (903)
T PRK04841 163 PPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDVEGWATAL 222 (903)
T ss_pred CCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCChHHHH
Confidence 211 111 112244555 9999999999987654 567899999999999874
No 10
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.17 E-value=2.6e-10 Score=103.97 Aligned_cols=175 Identities=17% Similarity=0.131 Sum_probs=108.2
Q ss_pred CcccchhhhHHHHHHHhhc-----cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHH
Q 038882 157 PRIIGQESIFDDVWRCIIE-----EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIG 231 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 231 (347)
..|+|+++.++.|..++.. .....+.++|++|+|||+||+.+++.. ...+ ..+..+...... .+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~---~~~~~~~~~~~~-~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM---GVNL---KITSGPALEKPG-DLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCE---EEeccchhcCch-hHHHHH
Confidence 4689999999999888863 345678899999999999999999876 2222 112211111222 222333
Q ss_pred HhcCCCC----ccccccChHHHHHHHHHHhcCCcEEEEEeCCCCcccccccccCCCCCCCCcEEEEecCChhHHhhc--C
Q 038882 232 KKIDLFS----ESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPVDLTKVGVPIPNSTNASKVLFTTRYKEVCGKM--E 305 (347)
Q Consensus 232 ~~l~~~~----~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~~--~ 305 (347)
..++... ++.+..+ ......+...+.+.+..+|+++..+...+.. .+ .+.+-|..||+...+...+ .
T Consensus 77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~---~~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DL---PPFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred HhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee---cC---CCeEEEEecCCccccCHHHHhh
Confidence 3333211 0001111 1223456666777777778877655544432 11 1245566677764433221 1
Q ss_pred CCceeecCCCCHHHHHHHHhhhhC-------hhhHHHHHHHhCCccc
Q 038882 306 AHKKLRVECLTADEAWMLFNVKVG-------EDTIDKIFVKCCCHTF 345 (347)
Q Consensus 306 ~~~~~~l~~L~~~ea~~Lf~~~~~-------~~~~~~I~~~~~G~PL 345 (347)
....+.+++++.++..+++.+.+. ++.+..|++.|+|.|-
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR 196 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPR 196 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcc
Confidence 134679999999999999998763 5678899999999984
No 11
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.08 E-value=1.1e-09 Score=100.66 Aligned_cols=175 Identities=17% Similarity=0.141 Sum_probs=104.6
Q ss_pred CcccchhhhHHHHHHHhhc-----cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHH
Q 038882 157 PRIIGQESIFDDVWRCIIE-----EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIG 231 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 231 (347)
..|+|+++.++.+..++.. .....+.++|++|+|||+||+.+++.. ...+ .++..+ .......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l---~~~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM---GVNI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh---CCCe---EEEecc-cccChHHHHHHH
Confidence 5689999999998877753 245678999999999999999999986 2221 112211 112222233444
Q ss_pred HhcCCCC----ccccccChHHHHHHHHHHhcCCcEEEEEeCCCCcccccccccCCCCCCCCcEEEEecCChhHHhhcC--
Q 038882 232 KKIDLFS----ESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPVDLTKVGVPIPNSTNASKVLFTTRYKEVCGKME-- 305 (347)
Q Consensus 232 ~~l~~~~----~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~~~-- 305 (347)
..+.... ++.+..+ ......+...+.+.+..+++|+..+...+.. .++ +.+-|..|++...+...+.
T Consensus 98 ~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~---~l~---~~~li~at~~~~~l~~~L~sR 170 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIRL---DLP---PFTLIGATTRAGLLTSPLRDR 170 (328)
T ss_pred HhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCccccceee---cCC---CceEEeecCCcccCCHHHHHh
Confidence 4433211 0001111 1122334555566666667766544322221 111 2345566766544332221
Q ss_pred CCceeecCCCCHHHHHHHHhhhhC-------hhhHHHHHHHhCCccc
Q 038882 306 AHKKLRVECLTADEAWMLFNVKVG-------EDTIDKIFVKCCCHTF 345 (347)
Q Consensus 306 ~~~~~~l~~L~~~ea~~Lf~~~~~-------~~~~~~I~~~~~G~PL 345 (347)
....+.+++++.++..+++.+.+. ++.+..|++.|+|.|-
T Consensus 171 f~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR 217 (328)
T PRK00080 171 FGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPR 217 (328)
T ss_pred cCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCch
Confidence 124689999999999999998753 6778999999999984
No 12
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.08 E-value=1.5e-09 Score=98.21 Aligned_cols=144 Identities=19% Similarity=0.283 Sum_probs=91.6
Q ss_pred HHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHH
Q 038882 169 VWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVE 248 (347)
Q Consensus 169 l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 248 (347)
|..++..+......+||++|+||||||+.+.... ...|. .++...+-.+-++++++
T Consensus 39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~-----~~sAv~~gvkdlr~i~e---------------- 94 (436)
T COG2256 39 LRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAFE-----ALSAVTSGVKDLREIIE---------------- 94 (436)
T ss_pred HHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCceE-----EeccccccHHHHHHHHH----------------
Confidence 4445666788889999999999999999998865 44442 22222111111222221
Q ss_pred HHHHH-HHHhcCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEE--ecCChhHH---hhcCCCceeecCCCCHHHH
Q 038882 249 KSCAI-FKILSNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLF--TTRYKEVC---GKMEAHKKLRVECLTADEA 320 (347)
Q Consensus 249 ~~~~l-~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iii--TtR~~~v~---~~~~~~~~~~l~~L~~~ea 320 (347)
.- .....+++.+|++|+|..- .+.+.+ +|...+|.-|+| ||.++... .......++.+++|+.++-
T Consensus 95 ---~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di 168 (436)
T COG2256 95 ---EARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDI 168 (436)
T ss_pred ---HHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHH
Confidence 12 1223489999999999653 333433 444567777777 77776531 2223346899999999999
Q ss_pred HHHHhhhh-------C-------hhhHHHHHHHhCC
Q 038882 321 WMLFNVKV-------G-------EDTIDKIFVKCCC 342 (347)
Q Consensus 321 ~~Lf~~~~-------~-------~~~~~~I~~~~~G 342 (347)
.+++.+.+ + ++....|+..+.|
T Consensus 169 ~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G 204 (436)
T COG2256 169 KKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG 204 (436)
T ss_pred HHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc
Confidence 99998833 1 3455666666666
No 13
>PRK06893 DNA replication initiation factor; Validated
Probab=99.05 E-value=1.6e-09 Score=94.45 Aligned_cols=137 Identities=14% Similarity=0.219 Sum_probs=85.6
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKI 256 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 256 (347)
..+.+.|+|++|+|||+|++.+++.. .. ....+.|++.+... .... .+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~-~~--~~~~~~y~~~~~~~---~~~~-----------------------~~~~~ 88 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHY-LL--NQRTAIYIPLSKSQ---YFSP-----------------------AVLEN 88 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH-HH--cCCCeEEeeHHHhh---hhhH-----------------------HHHhh
Confidence 34678999999999999999999986 22 23345666553210 0000 11111
Q ss_pred hcCCcEEEEEeCCCCc---ccccc-cccCCCCC-CCCcEEE-EecCC---------hhHHhhcCCCceeecCCCCHHHHH
Q 038882 257 LSNKKFVLLLDDVWEP---VDLTK-VGVPIPNS-TNASKVL-FTTRY---------KEVCGKMEAHKKLRVECLTADEAW 321 (347)
Q Consensus 257 l~~kr~LlVlDdv~~~---~~~~~-l~~~l~~~-~~gs~ii-iTtR~---------~~v~~~~~~~~~~~l~~L~~~ea~ 321 (347)
+. +.-+|+|||+|.. ..|+. +...+... ..|..+| +|+.. +.+.+.+.....++++++++++.+
T Consensus 89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKI 167 (229)
T ss_pred cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHH
Confidence 22 3359999999874 34442 22222211 2355554 45544 355666666678999999999999
Q ss_pred HHHhhhh-------ChhhHHHHHHHhCCc
Q 038882 322 MLFNVKV-------GEDTIDKIFVKCCCH 343 (347)
Q Consensus 322 ~Lf~~~~-------~~~~~~~I~~~~~G~ 343 (347)
+++++.+ .++...-|++.+.|.
T Consensus 168 ~iL~~~a~~~~l~l~~~v~~~L~~~~~~d 196 (229)
T PRK06893 168 IVLQRNAYQRGIELSDEVANFLLKRLDRD 196 (229)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhccCC
Confidence 9999776 356677777777664
No 14
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.02 E-value=1.8e-09 Score=102.29 Aligned_cols=159 Identities=15% Similarity=0.215 Sum_probs=98.9
Q ss_pred CcccchhhhHHH---HHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHh
Q 038882 157 PRIIGQESIFDD---VWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKK 233 (347)
Q Consensus 157 ~~~vGR~~~~~~---l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 233 (347)
..++|+++.+.. |.+++..+....+.++|++|+||||||+.+++.. ...| +.++....-..-++.++..
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~-----~~l~a~~~~~~~ir~ii~~ 83 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT---DAPF-----EALSAVTSGVKDLREVIEE 83 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh---CCCE-----EEEecccccHHHHHHHHHH
Confidence 457898887666 8888877777788999999999999999998875 2232 2222211111111222211
Q ss_pred cCCCCccccccChHHHHHHHHHH-hcCCcEEEEEeCCCCcc--cccccccCCCCCCCCcEEEE--ecCChhHH---hhcC
Q 038882 234 IDLFSESWKNKSLVEKSCAIFKI-LSNKKFVLLLDDVWEPV--DLTKVGVPIPNSTNASKVLF--TTRYKEVC---GKME 305 (347)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iii--TtR~~~v~---~~~~ 305 (347)
.... ..+++.+|+||+++... ..+.+...+. .+..+++ ||.+.... ....
T Consensus 84 -------------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~S 141 (413)
T PRK13342 84 -------------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLS 141 (413)
T ss_pred -------------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhc
Confidence 1111 24578899999998652 3334433332 2444444 34443211 1112
Q ss_pred CCceeecCCCCHHHHHHHHhhhh----------ChhhHHHHHHHhCCccc
Q 038882 306 AHKKLRVECLTADEAWMLFNVKV----------GEDTIDKIFVKCCCHTF 345 (347)
Q Consensus 306 ~~~~~~l~~L~~~ea~~Lf~~~~----------~~~~~~~I~~~~~G~PL 345 (347)
....+.+.+++.++...++.+.+ .++....|++.|+|.|.
T Consensus 142 R~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R 191 (413)
T PRK13342 142 RAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDAR 191 (413)
T ss_pred cceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHH
Confidence 23578999999999999998743 24567788999998764
No 15
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.01 E-value=1.9e-09 Score=93.78 Aligned_cols=154 Identities=12% Similarity=0.122 Sum_probs=96.1
Q ss_pred hhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccc
Q 038882 162 QESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESW 241 (347)
Q Consensus 162 R~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 241 (347)
.+..++.+.+++.......+.|+|++|+|||+||+.+++.. . ......++++++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~-~--~~~~~~~~i~~~~~~~------~~----------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAA-E--ERGKSAIYLPLAELAQ------AD----------- 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHH-H--hcCCcEEEEeHHHHHH------hH-----------
Confidence 34567777777666667899999999999999999999876 2 2233445665443211 00
Q ss_pred cccChHHHHHHHHHHhcCCcEEEEEeCCCCcc---ccc-ccccCCCC-CCCCcEEEEecCChh---------HHhhcCCC
Q 038882 242 KNKSLVEKSCAIFKILSNKKFVLLLDDVWEPV---DLT-KVGVPIPN-STNASKVLFTTRYKE---------VCGKMEAH 307 (347)
Q Consensus 242 ~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---~~~-~l~~~l~~-~~~gs~iiiTtR~~~---------v~~~~~~~ 307 (347)
..+...+.+ .-+|||||++... .|. .+...+.. ...+.++|+||+... +...+...
T Consensus 82 ---------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~ 151 (226)
T TIGR03420 82 ---------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWG 151 (226)
T ss_pred ---------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcC
Confidence 011111222 2489999997643 222 22222211 123457888887532 22233334
Q ss_pred ceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCccc
Q 038882 308 KKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHTF 345 (347)
Q Consensus 308 ~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~PL 345 (347)
..+.+++++.++...++.+.+ .++.+..|.+.+.|+|.
T Consensus 152 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r 196 (226)
T TIGR03420 152 LVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMG 196 (226)
T ss_pred eeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHH
Confidence 578999999999999988643 35667888888888874
No 16
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.96 E-value=7.8e-09 Score=95.54 Aligned_cols=182 Identities=14% Similarity=0.131 Sum_probs=103.5
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCC-EEEEEEecCCCChHHHHHHHHH---
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFD-IVIWVVVSKDLNLEKVQEDIGK--- 232 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~i~~--- 232 (347)
..++|++..++.|.+++..+..+.+.++|++|+||||+|+.+.+.. .. ..+. ..+.++++.... .....+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l-~~-~~~~~~~~~i~~~~~~~--~~~~~~~~~~~ 90 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL-YG-DPWENNFTEFNVADFFD--QGKKYLVEDPR 90 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh-cC-cccccceEEechhhhhh--cchhhhhcCcc
Confidence 5689999999999999988776678999999999999999999876 21 2222 233444332110 00000000
Q ss_pred ---hcCCCCccccccChHHHHHHH-HHHh-----cCCcEEEEEeCCCCcc--cccccccCCCCCCCCcEEEEecCChh-H
Q 038882 233 ---KIDLFSESWKNKSLVEKSCAI-FKIL-----SNKKFVLLLDDVWEPV--DLTKVGVPIPNSTNASKVLFTTRYKE-V 300 (347)
Q Consensus 233 ---~l~~~~~~~~~~~~~~~~~~l-~~~l-----~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTtR~~~-v 300 (347)
.++.. .. ...........+ .... .+.+-+||+||++... ....+...+......+++|+||.+.. +
T Consensus 91 ~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~ 168 (337)
T PRK12402 91 FAHFLGTD-KR-IRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKL 168 (337)
T ss_pred hhhhhhhh-hh-hccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhC
Confidence 00000 00 000111111111 1111 1345589999996542 22233332322334577888775432 2
Q ss_pred HhhcC-CCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 301 CGKME-AHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 301 ~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
...+. ....+.+.+++.++...++.+.+ .++.+..|++.++|.+
T Consensus 169 ~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdl 220 (337)
T PRK12402 169 IPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDL 220 (337)
T ss_pred chhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 22222 22468899999999998888754 3567888888888764
No 17
>PF13173 AAA_14: AAA domain
Probab=98.93 E-value=2.3e-09 Score=84.69 Aligned_cols=120 Identities=20% Similarity=0.195 Sum_probs=81.2
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHHh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKIL 257 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 257 (347)
.+++.|.|+.|+|||||+++++.+. . ....+++++.......... ..+ ....+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~-~---~~~~~~yi~~~~~~~~~~~------------------~~~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL-L---PPENILYINFDDPRDRRLA------------------DPD-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh-c---ccccceeeccCCHHHHHHh------------------hhh-hHHHHHHhh
Confidence 4689999999999999999999887 2 3445566655443211000 000 223333334
Q ss_pred cCCcEEEEEeCCCCcccccccccCCCCCCCCcEEEEecCChhHHhh-----c-CCCceeecCCCCHHHH
Q 038882 258 SNKKFVLLLDDVWEPVDLTKVGVPIPNSTNASKVLFTTRYKEVCGK-----M-EAHKKLRVECLTADEA 320 (347)
Q Consensus 258 ~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~-----~-~~~~~~~l~~L~~~ea 320 (347)
..++.+|+||++....+|......+.+...+.+|++|+.+...... + +....++|.||+-.|.
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 4478899999999988888887776666667899999988765432 1 1123679999998774
No 18
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.90 E-value=1.3e-08 Score=81.61 Aligned_cols=123 Identities=22% Similarity=0.186 Sum_probs=74.1
Q ss_pred cchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCc
Q 038882 160 IGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSE 239 (347)
Q Consensus 160 vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 239 (347)
+|++..+..+...+.....+.+.|+|++|+|||+|++.+++.. . ..-..++++..+...........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~-~--~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL-F--RPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh-h--cCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 4788899999998887677889999999999999999999987 2 222345666554433222111111000
Q ss_pred cccccChHHHHHHHHHHhcCCcEEEEEeCCCCc-----ccccccccCCCC---CCCCcEEEEecCChh
Q 038882 240 SWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEP-----VDLTKVGVPIPN---STNASKVLFTTRYKE 299 (347)
Q Consensus 240 ~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----~~~~~l~~~l~~---~~~gs~iiiTtR~~~ 299 (347)
............++.+|++||++.. ..+..+...+.. ...+..+|+||....
T Consensus 72 --------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 --------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred --------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223457789999999853 112222222211 135788888888654
No 19
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.90 E-value=1.6e-08 Score=101.25 Aligned_cols=180 Identities=13% Similarity=0.131 Sum_probs=106.4
Q ss_pred CcccchhhhHHHHHHHhhccCceE-EEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGI-IGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~v-i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
..++|.+..++.|.+++..+...- +.++|+.|+||||+|+.+++.. ........ ..+........+.....
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~L-nce~~~~~-------~pCg~C~sC~~i~~g~~ 87 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGL-NCEQGVTA-------TPCGVCSSCVEIAQGRF 87 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhc-cCccCCCC-------CCCCCchHHHHHhcCCC
Confidence 468999999999999998876655 4899999999999999999876 21111100 00011111111111100
Q ss_pred CC---CccccccChH---HHHHHHHH-HhcCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCCh-hHHhh-c
Q 038882 236 LF---SESWKNKSLV---EKSCAIFK-ILSNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRYK-EVCGK-M 304 (347)
Q Consensus 236 ~~---~~~~~~~~~~---~~~~~l~~-~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~-~v~~~-~ 304 (347)
.. -+.......+ ++...+.. -..+++-++|||+++.. ..++.++..+-......++|++|.+. .+... .
T Consensus 88 ~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIl 167 (944)
T PRK14949 88 VDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVL 167 (944)
T ss_pred ceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHH
Confidence 00 0000001111 11111111 12457789999999765 45566555554444566676665543 33222 1
Q ss_pred CCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 305 EAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 305 ~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
.....|++.+|+.++..+++.+.+ .++.+..|++.++|.|
T Consensus 168 SRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~ 214 (944)
T PRK14949 168 SRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSM 214 (944)
T ss_pred HhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 222579999999999999998854 2457888999999976
No 20
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.88 E-value=5.3e-08 Score=90.75 Aligned_cols=179 Identities=17% Similarity=0.202 Sum_probs=106.4
Q ss_pred CcccchhhhHHHHHHHhhccCc-eEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
..++|.++.++.+.+.+..+.. ..+.++|++|+||||+|+.+++.. ....... ..++.......++.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l-~c~~~~~-------~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSL-NCQNGIT-------SNPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHh-cCCCCCC-------CCCCCCCHHHHHHhcCCC
Confidence 5689999999999999887654 457899999999999999999876 2111110 011111112222222111
Q ss_pred CCC---ccccccChHHHHHHHHHHh-----cCCcEEEEEeCCCCcc--cccccccCCCCCCCCcEEEEecCChh-HHhhc
Q 038882 236 LFS---ESWKNKSLVEKSCAIFKIL-----SNKKFVLLLDDVWEPV--DLTKVGVPIPNSTNASKVLFTTRYKE-VCGKM 304 (347)
Q Consensus 236 ~~~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTtR~~~-v~~~~ 304 (347)
..- +.......++ ...+.+.+ .+++-++|+|+++... .++.++..+......+++|++|.+.. +...+
T Consensus 88 ~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI 166 (363)
T PRK14961 88 LDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTI 166 (363)
T ss_pred CceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHH
Confidence 000 0000011122 22222222 2355699999997763 35556555554455667777765443 32222
Q ss_pred -CCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 305 -EAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 305 -~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
+....+++.+++.++..+.+.+.+ .++.+..|+..++|.|
T Consensus 167 ~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~ 214 (363)
T PRK14961 167 LSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSM 214 (363)
T ss_pred HhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 123578999999999998887643 2567788999999876
No 21
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.88 E-value=2.7e-08 Score=97.86 Aligned_cols=180 Identities=13% Similarity=0.140 Sum_probs=109.1
Q ss_pred CcccchhhhHHHHHHHhhccCc-eEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
.+++|.++.++.|.+++..+.. ..+.++|..|+||||+|+.+.+.. .....+. +..+.....++.|...-.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaL-nCe~~~~-------~~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKAL-NCETGVT-------SQPCGVCRACREIDEGRF 87 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHh-cCccCCC-------CCCCcccHHHHHHhcCCC
Confidence 4689999999999999988653 456799999999999999998876 2111111 011122222233321100
Q ss_pred CCC---ccccccChHHHHHHHHHH----hcCCcEEEEEeCCCCcc--cccccccCCCCCCCCcEEEEecCChhH-Hhhc-
Q 038882 236 LFS---ESWKNKSLVEKSCAIFKI----LSNKKFVLLLDDVWEPV--DLTKVGVPIPNSTNASKVLFTTRYKEV-CGKM- 304 (347)
Q Consensus 236 ~~~---~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTtR~~~v-~~~~- 304 (347)
... +.......++....+... ..++.-++|||+++... .++.++..+-....+.++|++|.+..- ...+
T Consensus 88 ~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIr 167 (830)
T PRK07003 88 VDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVL 167 (830)
T ss_pred ceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhh
Confidence 000 000111222222222221 12456689999998763 366665555444567788887776542 2111
Q ss_pred CCCceeecCCCCHHHHHHHHhhhhC-------hhhHHHHHHHhCCcc
Q 038882 305 EAHKKLRVECLTADEAWMLFNVKVG-------EDTIDKIFVKCCCHT 344 (347)
Q Consensus 305 ~~~~~~~l~~L~~~ea~~Lf~~~~~-------~~~~~~I~~~~~G~P 344 (347)
.....|.+.+++.++..+.+.+.+. ++.+..|.+.++|..
T Consensus 168 SRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gsm 214 (830)
T PRK07003 168 SRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSM 214 (830)
T ss_pred hheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 1224789999999999999987653 566788888988853
No 22
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.88 E-value=3.5e-08 Score=88.24 Aligned_cols=134 Identities=19% Similarity=0.233 Sum_probs=91.2
Q ss_pred HHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHH
Q 038882 169 VWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVE 248 (347)
Q Consensus 169 l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 248 (347)
|.+++.++....+.+||++|+||||||+.+.... +... ..+|..|....-..-++.|+++...
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts-k~~S----yrfvelSAt~a~t~dvR~ife~aq~------------ 215 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS-KKHS----YRFVELSATNAKTNDVRDIFEQAQN------------ 215 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc-CCCc----eEEEEEeccccchHHHHHHHHHHHH------------
Confidence 4455566788999999999999999999998875 2222 5567766654444445555544321
Q ss_pred HHHHHHHHhcCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEE--ecCChhH---HhhcCCCceeecCCCCHHHHH
Q 038882 249 KSCAIFKILSNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLF--TTRYKEV---CGKMEAHKKLRVECLTADEAW 321 (347)
Q Consensus 249 ~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iii--TtR~~~v---~~~~~~~~~~~l~~L~~~ea~ 321 (347)
...+.++|.+|.+|+|..- .+.+. .+|...+|+-++| ||.++.. ...+....++.|++|..++..
T Consensus 216 -----~~~l~krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~ 287 (554)
T KOG2028|consen 216 -----EKSLTKRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVV 287 (554)
T ss_pred -----HHhhhcceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHH
Confidence 1224678999999999543 33333 3566677887776 7877754 222333468999999999999
Q ss_pred HHHhhh
Q 038882 322 MLFNVK 327 (347)
Q Consensus 322 ~Lf~~~ 327 (347)
.++.+-
T Consensus 288 ~iL~ra 293 (554)
T KOG2028|consen 288 TILMRA 293 (554)
T ss_pred HHHHHH
Confidence 999873
No 23
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.87 E-value=5.7e-09 Score=87.66 Aligned_cols=74 Identities=22% Similarity=0.346 Sum_probs=42.2
Q ss_pred cccchhhhHHHHHHHhh---ccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCC-----ChHHHHHH
Q 038882 158 RIIGQESIFDDVWRCII---EEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDL-----NLEKVQED 229 (347)
Q Consensus 158 ~~vGR~~~~~~l~~~L~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-----~~~~~~~~ 229 (347)
.|+||+++++.|...|. ....+.+.|+|.+|+|||+|++.++... .....+ .+.+.+.... ....++++
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 77 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL-AERGGY--VISINCDDSERNPYSPFRSALRQ 77 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH-HHHT----EEEEEEETTTS-HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH-HhcCCE--EEEEEEeccccchhhHHHHHHHH
Confidence 37999999999999993 2357899999999999999999999888 333223 3333333331 13555555
Q ss_pred HHHhc
Q 038882 230 IGKKI 234 (347)
Q Consensus 230 i~~~l 234 (347)
++.++
T Consensus 78 l~~~~ 82 (185)
T PF13191_consen 78 LIDQL 82 (185)
T ss_dssp HS---
T ss_pred HHHHh
Confidence 55553
No 24
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.86 E-value=4.8e-08 Score=89.54 Aligned_cols=168 Identities=15% Similarity=0.211 Sum_probs=100.9
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEe--cCCCChHHHHHHHHHhc
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVV--SKDLNLEKVQEDIGKKI 234 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v--s~~~~~~~~~~~i~~~l 234 (347)
.+++|+++.++.+..++..+..+.+.++|++|+||||+++.+++.. ... .+.. .++.+ +...... ...+.+..+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l-~~~-~~~~-~~i~~~~~~~~~~~-~~~~~i~~~ 92 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL-YGE-DWRE-NFLELNASDERGID-VIRNKIKEF 92 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH-cCC-cccc-ceEEeccccccchH-HHHHHHHHH
Confidence 4579999999999999988766778999999999999999999876 211 1211 12222 2221111 111111111
Q ss_pred CCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCcc--cccccccCCCCCCCCcEEEEecCChh-HHhhc-CCCcee
Q 038882 235 DLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPV--DLTKVGVPIPNSTNASKVLFTTRYKE-VCGKM-EAHKKL 310 (347)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTtR~~~-v~~~~-~~~~~~ 310 (347)
....+ .....+-+|++|+++... ....+...+......+.+|+++.... +...+ .....+
T Consensus 93 ~~~~~----------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~ 156 (319)
T PRK00440 93 ARTAP----------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVF 156 (319)
T ss_pred HhcCC----------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhee
Confidence 10000 001245689999986542 23334333333344567777764322 11111 112468
Q ss_pred ecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 311 RVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 311 ~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
++++++.++...++.+.+ .++.+..+++.++|.+
T Consensus 157 ~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~ 197 (319)
T PRK00440 157 RFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDM 197 (319)
T ss_pred eeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 999999999988888764 2567888999998875
No 25
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.6e-07 Score=87.00 Aligned_cols=168 Identities=19% Similarity=0.235 Sum_probs=116.6
Q ss_pred CcccchhhhHHHHHHHhhc----cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHH
Q 038882 157 PRIIGQESIFDDVWRCIIE----EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGK 232 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 232 (347)
..+.+|+.+++++...|.. +...-+.|+|.+|+|||+.++.+...........+ +++|++-...+..+++..|++
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHH
Confidence 5589999999999998865 23334899999999999999999998832222333 889999999999999999999
Q ss_pred hcCCCCccccccChHHHHHHHHHHhc--CCcEEEEEeCCCCccccc--ccccCCCCC-CCCcEE--EEecCChhHH----
Q 038882 233 KIDLFSESWKNKSLVEKSCAIFKILS--NKKFVLLLDDVWEPVDLT--KVGVPIPNS-TNASKV--LFTTRYKEVC---- 301 (347)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~--~l~~~l~~~-~~gs~i--iiTtR~~~v~---- 301 (347)
+++.. +....+..+....+.+.+. ++.+++|||+++....-. -+...+... ...++| |..+-+....
T Consensus 96 ~~~~~--p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 96 KLGKV--PLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HcCCC--CCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhh
Confidence 99732 2234566677777777775 478999999997653321 221111111 114444 3344444332
Q ss_pred ----hhcCCCceeecCCCCHHHHHHHHhhhh
Q 038882 302 ----GKMEAHKKLRVECLTADEAWMLFNVKV 328 (347)
Q Consensus 302 ----~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 328 (347)
+.++.. .+..+|-+.+|-.+.+..++
T Consensus 174 ~rv~s~l~~~-~I~F~pY~a~el~~Il~~R~ 203 (366)
T COG1474 174 PRVKSSLGPS-EIVFPPYTAEELYDILRERV 203 (366)
T ss_pred hhhhhccCcc-eeeeCCCCHHHHHHHHHHHH
Confidence 223332 47789999999999998876
No 26
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=5.7e-08 Score=88.84 Aligned_cols=170 Identities=16% Similarity=0.195 Sum_probs=113.1
Q ss_pred CcccchhhhHHHHHHHhhccCc-eEEEEEeCCCCchHHHHHHHHHhhh---ccCCCCCEEEEEEe-cCCCChHHHHHHHH
Q 038882 157 PRIIGQESIFDDVWRCIIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLC---HERHDFDIVIWVVV-SKDLNLEKVQEDIG 231 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~---~~~~~f~~~~wv~v-s~~~~~~~~~~~i~ 231 (347)
..++|.+...+.|.+++..+.. ....++|+.|+||||+|+.++.... ....|++...|... +......+ .+++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence 3578999999999999987654 5668999999999999999998651 12345565555432 22223333 22333
Q ss_pred HhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCC--cccccccccCCCCCCCCcEEEEecCChhHH-hh-cCCC
Q 038882 232 KKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWE--PVDLTKVGVPIPNSTNASKVLFTTRYKEVC-GK-MEAH 307 (347)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~-~~-~~~~ 307 (347)
..+.... ..+++-++|+|+++. ...++.++..+.....++.+|++|.+.+.. .. ....
T Consensus 83 ~~~~~~p------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc 144 (313)
T PRK05564 83 EEVNKKP------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRC 144 (313)
T ss_pred HHHhcCc------------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhc
Confidence 3222100 124556777777654 356777877777777888999888765422 11 1123
Q ss_pred ceeecCCCCHHHHHHHHhhhh---ChhhHHHHHHHhCCccc
Q 038882 308 KKLRVECLTADEAWMLFNVKV---GEDTIDKIFVKCCCHTF 345 (347)
Q Consensus 308 ~~~~l~~L~~~ea~~Lf~~~~---~~~~~~~I~~~~~G~PL 345 (347)
..+.+.+++.++....+.+.. .++.+..++..++|.|.
T Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 145 QIYKLNRLSKEEIEKFISYKYNDIKEEEKKSAIAFSDGIPG 185 (313)
T ss_pred eeeeCCCcCHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCHH
Confidence 578999999999998887654 35667788999999874
No 27
>PRK08727 hypothetical protein; Validated
Probab=98.84 E-value=3.8e-08 Score=85.97 Aligned_cols=155 Identities=13% Similarity=0.153 Sum_probs=92.0
Q ss_pred ccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCC
Q 038882 159 IIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFS 238 (347)
Q Consensus 159 ~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 238 (347)
++|-...+..+...........+.|+|.+|+|||+|++.+++.. .. ....+.|++..+ ....+.
T Consensus 22 ~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~-~~--~~~~~~y~~~~~------~~~~~~------- 85 (233)
T PRK08727 22 IAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAA-EQ--AGRSSAYLPLQA------AAGRLR------- 85 (233)
T ss_pred cCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHH-HH--cCCcEEEEeHHH------hhhhHH-------
Confidence 34444444444444333344679999999999999999999876 22 223555665322 111110
Q ss_pred ccccccChHHHHHHHHHHhcCCcEEEEEeCCCCcc---cccccccCCCC--CCCCcEEEEecCCh---------hHHhhc
Q 038882 239 ESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPV---DLTKVGVPIPN--STNASKVLFTTRYK---------EVCGKM 304 (347)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---~~~~l~~~l~~--~~~gs~iiiTtR~~---------~v~~~~ 304 (347)
. ..+.+ .+.-+|||||+.... .|......+.+ ...|..+|+||+.. ++.+.+
T Consensus 86 ------------~-~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl 151 (233)
T PRK08727 86 ------------D-ALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRL 151 (233)
T ss_pred ------------H-HHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHH
Confidence 0 11111 133589999996542 23222111111 12456799999853 233344
Q ss_pred CCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCc
Q 038882 305 EAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCH 343 (347)
Q Consensus 305 ~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~ 343 (347)
.....+++++++.++-.+++.+.+ .++.+.-|++.+.|-
T Consensus 152 ~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd 197 (233)
T PRK08727 152 AQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERE 197 (233)
T ss_pred hcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCC
Confidence 445688999999999999999854 356677777777653
No 28
>PLN03025 replication factor C subunit; Provisional
Probab=98.83 E-value=8.2e-08 Score=88.00 Aligned_cols=170 Identities=15% Similarity=0.166 Sum_probs=101.0
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCC-EEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFD-IVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
..++|.++.++.|..++..+..+.+.++|++|+||||+|+.+++.. . ...|. .++-++.+...... ..++++..+.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l-~-~~~~~~~~~eln~sd~~~~~-~vr~~i~~~~ 89 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL-L-GPNYKEAVLELNASDDRGID-VVRNKIKMFA 89 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH-h-cccCccceeeecccccccHH-HHHHHHHHHH
Confidence 4578999989999888887777778899999999999999999876 1 11222 11112222221111 1222221111
Q ss_pred CCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCcc--cccccccCCCCCCCCcEEEEecCChh-HHhhcC-CCceee
Q 038882 236 LFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPV--DLTKVGVPIPNSTNASKVLFTTRYKE-VCGKME-AHKKLR 311 (347)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTtR~~~-v~~~~~-~~~~~~ 311 (347)
..... .-.++.-+++||+++... ....+...+......+++|+++.... +...+. ....++
T Consensus 90 ~~~~~---------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~ 154 (319)
T PLN03025 90 QKKVT---------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVR 154 (319)
T ss_pred hcccc---------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhccc
Confidence 00000 002356799999997752 22333333322344567777765432 211111 124789
Q ss_pred cCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 312 VECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 312 l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
++++++++....+...+ .++.+..|+..++|..
T Consensus 155 f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDl 194 (319)
T PLN03025 155 FSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDM 194 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 99999999998888765 2567888888888853
No 29
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.83 E-value=1.1e-08 Score=98.64 Aligned_cols=178 Identities=12% Similarity=0.095 Sum_probs=107.3
Q ss_pred CcccchhhhHHHHHHHhhccCce-EEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVG-IIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
..++|.++.++.|.+++..+... .+.++|++|+||||+|+.+++.. .....+...+|.|.+. ..+.....
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l-~c~~~~~~~cg~C~sc--------~~i~~~~h 84 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAV-NCSGEDPKPCGECESC--------LAVRRGAH 84 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH-hccCCCCCCCCcChhh--------HHHhcCCC
Confidence 46799999999999998887654 55999999999999999999877 2222233334433221 11111000
Q ss_pred CCC---ccccccChHHHHHHHHHHh-----cCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCCh-hHHhhc
Q 038882 236 LFS---ESWKNKSLVEKSCAIFKIL-----SNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRYK-EVCGKM 304 (347)
Q Consensus 236 ~~~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~-~v~~~~ 304 (347)
..- ........+. ...+.+.+ .+++-++|||+++.. ..++.++..+......+.+|++|... .+...+
T Consensus 85 ~dv~el~~~~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I 163 (504)
T PRK14963 85 PDVLEIDAASNNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTI 163 (504)
T ss_pred CceEEecccccCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHH
Confidence 000 0000111222 12223322 246679999999765 34555655554444455666655443 332222
Q ss_pred C-CCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 305 E-AHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 305 ~-~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
. ....+++.+++.++..+++.+.+ .++.+..|++.++|.+
T Consensus 164 ~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~Gdl 211 (504)
T PRK14963 164 LSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAM 211 (504)
T ss_pred hcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 2 23478999999999999998754 2456788999998875
No 30
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.83 E-value=1.2e-07 Score=94.27 Aligned_cols=172 Identities=12% Similarity=0.066 Sum_probs=107.4
Q ss_pred CCcccchhhhHHHHHHHhhc-----cCceEEEEEeCCCCchHHHHHHHHHhhhcc--CCCCC--EEEEEEecCCCChHHH
Q 038882 156 EPRIIGQESIFDDVWRCIIE-----EQVGIIGLYGAGGVGKTTLLKQLNNKLCHE--RHDFD--IVIWVVVSKDLNLEKV 226 (347)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~~f~--~~~wv~vs~~~~~~~~ 226 (347)
++.+.||+++++.|...|.. ....++.|+|++|+|||+.++.|....... ..... .+++|++........+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 56789999999999998865 133567899999999999999998876211 11222 3567877777788889
Q ss_pred HHHHHHhcCCCCccccccChHHHHHHHHHHhc---CCcEEEEEeCCCCccc--ccccccCCC-CCCCCcEEEE--ecCCh
Q 038882 227 QEDIGKKIDLFSESWKNKSLVEKSCAIFKILS---NKKFVLLLDDVWEPVD--LTKVGVPIP-NSTNASKVLF--TTRYK 298 (347)
Q Consensus 227 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~kr~LlVlDdv~~~~~--~~~l~~~l~-~~~~gs~iii--TtR~~ 298 (347)
+..|..++.... .....+..+....+...+. +...+||||+++.... -+.+...+. ....+++|++ +|...
T Consensus 834 YqvI~qqL~g~~-P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 834 YQVLYKQLFNKK-PPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHcCCC-CCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 999998884322 1223333445555555542 2346999999975421 111111111 1123455544 34322
Q ss_pred h--------HHhhcCCCceeecCCCCHHHHHHHHhhhhC
Q 038882 299 E--------VCGKMEAHKKLRVECLTADEAWMLFNVKVG 329 (347)
Q Consensus 299 ~--------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 329 (347)
+ +...++. ..+..+|++.++-.+++..++.
T Consensus 913 DLperLdPRLRSRLg~-eeIvF~PYTaEQL~dILk~RAe 950 (1164)
T PTZ00112 913 DLPERLIPRCRSRLAF-GRLVFSPYKGDEIEKIIKERLE 950 (1164)
T ss_pred hcchhhhhhhhhcccc-ccccCCCCCHHHHHHHHHHHHH
Confidence 2 1222221 2466799999999999988763
No 31
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.82 E-value=5.5e-08 Score=94.52 Aligned_cols=186 Identities=12% Similarity=0.105 Sum_probs=108.3
Q ss_pred CcccchhhhHHHHHHHhhccCce-EEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVG-IIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
.+++|.++.++.|.+++..+... .+.++|..|+||||+|+.+.+.. .-...-...- + .+..+.....++.|...-.
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaL-nC~~p~~~~g-~-~~~PCG~C~sC~~I~aG~h 92 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSL-NCTGADGEGG-I-TAQPCGQCRACTEIDAGRF 92 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh-cCCCcccccc-C-CCCCCcccHHHHHHHcCCC
Confidence 46899999999999999887654 56899999999999999999876 2110000000 0 0011111222333221100
Q ss_pred CCC---ccccccChHHHHHHHHHH----hcCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCCh-hHHhhcC
Q 038882 236 LFS---ESWKNKSLVEKSCAIFKI----LSNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRYK-EVCGKME 305 (347)
Q Consensus 236 ~~~---~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~-~v~~~~~ 305 (347)
..- +.......++....+... ..++.-++|||+++.. ..++.++..+-.-..++++|++|.+. .+...+.
T Consensus 93 pDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIr 172 (700)
T PRK12323 93 VDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVL 172 (700)
T ss_pred CcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHH
Confidence 000 000112223333222221 1356779999999775 44566655554444566666655543 3322211
Q ss_pred -CCceeecCCCCHHHHHHHHhhhhC-------hhhHHHHHHHhCCccc
Q 038882 306 -AHKKLRVECLTADEAWMLFNVKVG-------EDTIDKIFVKCCCHTF 345 (347)
Q Consensus 306 -~~~~~~l~~L~~~ea~~Lf~~~~~-------~~~~~~I~~~~~G~PL 345 (347)
....|.+..++.++..+.+.+.+. ++.+..|++.++|.|.
T Consensus 173 SRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~R 220 (700)
T PRK12323 173 SRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMR 220 (700)
T ss_pred HHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 125789999999999998886542 3456789999999873
No 32
>PTZ00202 tuzin; Provisional
Probab=98.82 E-value=1.2e-07 Score=87.60 Aligned_cols=159 Identities=14% Similarity=0.094 Sum_probs=99.7
Q ss_pred CCcccchhhhHHHHHHHhhcc---CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHH
Q 038882 156 EPRIIGQESIFDDVWRCIIEE---QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGK 232 (347)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~~---~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 232 (347)
.+.|+||+.++..|...|... ..+++.|+|++|+|||||++.+.... . + ..++.-.. +..++++.++.
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l-~----~--~qL~vNpr--g~eElLr~LL~ 331 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE-G----M--PAVFVDVR--GTEDTLRSVVK 331 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC-C----c--eEEEECCC--CHHHHHHHHHH
Confidence 478999999999999988652 34689999999999999999998765 1 1 12222222 67999999999
Q ss_pred hcCCCCccccccChHHHHHHHHHHh-----c-CCcEEEEEeCCCCccccccc---ccCCCCCCCCcEEEEecCChhHHhh
Q 038882 233 KIDLFSESWKNKSLVEKSCAIFKIL-----S-NKKFVLLLDDVWEPVDLTKV---GVPIPNSTNASKVLFTTRYKEVCGK 303 (347)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~~l~~~l-----~-~kr~LlVlDdv~~~~~~~~l---~~~l~~~~~gs~iiiTtR~~~v~~~ 303 (347)
+|+.+.. ....++...+.+.+ . +++.+||+-=- +...+... ...+.....-|+|++----+.+...
T Consensus 332 ALGV~p~----~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lr-eg~~l~rvyne~v~la~drr~ch~v~evpleslt~~ 406 (550)
T PTZ00202 332 ALGVPNV----EACGDLLDFISEACRRAKKMNGETPLLVLKLR-EGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIA 406 (550)
T ss_pred HcCCCCc----ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEec-CCCcHHHHHHHHHHHHccchhheeeeeehHhhcchh
Confidence 9997322 22233444444333 2 56666665422 11111111 1112223345677765544433211
Q ss_pred ---cCCCceeecCCCCHHHHHHHHhhhh
Q 038882 304 ---MEAHKKLRVECLTADEAWMLFNVKV 328 (347)
Q Consensus 304 ---~~~~~~~~l~~L~~~ea~~Lf~~~~ 328 (347)
+..-..|.++++|.++|..+-.+..
T Consensus 407 ~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 407 NTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred cccCccceeEecCCCCHHHHHHHHhhcc
Confidence 1112468899999999999988865
No 33
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.81 E-value=1.2e-08 Score=80.64 Aligned_cols=116 Identities=22% Similarity=0.266 Sum_probs=78.6
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhhhcc--CCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHH
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKLCHE--RHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFK 255 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 255 (347)
.+.+.|+|.+|+|||++++.+....... ...-..++|+.++...+...+...|+.+++..... ..+..++...+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~~ 81 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLID 81 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHHH
Confidence 4788999999999999999999876211 01134667999988889999999999999864332 3566777788888
Q ss_pred HhcCCc-EEEEEeCCCCc-c--cccccccCCCCCCCCcEEEEecCC
Q 038882 256 ILSNKK-FVLLLDDVWEP-V--DLTKVGVPIPNSTNASKVLFTTRY 297 (347)
Q Consensus 256 ~l~~kr-~LlVlDdv~~~-~--~~~~l~~~l~~~~~gs~iiiTtR~ 297 (347)
.+...+ .+||+||++.. . .++.+.. +.+ ..+.++|+..+.
T Consensus 82 ~l~~~~~~~lviDe~~~l~~~~~l~~l~~-l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 82 ALDRRRVVLLVIDEADHLFSDEFLEFLRS-LLN-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHCTEEEEEEETTHHHHTHHHHHHHHH-HTC-SCBEEEEEEESS
T ss_pred HHHhcCCeEEEEeChHhcCCHHHHHHHHH-HHh-CCCCeEEEEECh
Confidence 887654 59999999654 1 2222322 222 566777777664
No 34
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=4.4e-08 Score=92.66 Aligned_cols=180 Identities=13% Similarity=0.098 Sum_probs=106.6
Q ss_pred CcccchhhhHHHHHHHhhccCce-EEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVG-IIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
..++|.+..+..|..++..+... .+.++|+.|+||||+|+.+++.. ........ ..+....+ ...+.....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~L-nce~~~~~---~pCg~C~s----C~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRL-NCENPIGN---EPCNECTS----CLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhc-CcccccCc---cccCCCcH----HHHHHccCC
Confidence 46799999999999999887654 57999999999999999999876 21111000 01111111 222222211
Q ss_pred CCC---ccccccChHH---HHHHHHHH-hcCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCC-hhHHhhcC
Q 038882 236 LFS---ESWKNKSLVE---KSCAIFKI-LSNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRY-KEVCGKME 305 (347)
Q Consensus 236 ~~~---~~~~~~~~~~---~~~~l~~~-l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~-~~v~~~~~ 305 (347)
..- +.......+. +...+... ..++.-++|+|+++.. ..++.++..+-.......+|++|.. ..+...+.
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 100 0000111222 22222211 2356679999999765 4466665555443445555555544 33322222
Q ss_pred -CCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 306 -AHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 306 -~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
....|.+.+++.++..+++.+.+ .++.+..|++.++|.|
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~ 216 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSV 216 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChH
Confidence 22478999999999988888764 2567888999999875
No 35
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.80 E-value=3.6e-08 Score=100.84 Aligned_cols=189 Identities=15% Similarity=0.228 Sum_probs=108.0
Q ss_pred ccchhhhHHHHHHHhhc---cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCC---ChHHHHHHHHH
Q 038882 159 IIGQESIFDDVWRCIIE---EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDL---NLEKVQEDIGK 232 (347)
Q Consensus 159 ~vGR~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~---~~~~~~~~i~~ 232 (347)
++||+.+++.|...+.. ....++.+.|..|||||+|+++|.....+.+..|-...+-....+. ...+.+++++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 69999999999999876 4567999999999999999999998772221222111111111111 23334444444
Q ss_pred hc-------------------CCCCcc------------------c--cccChHH-----HHHHHHHHh-cCCcEEEEEe
Q 038882 233 KI-------------------DLFSES------------------W--KNKSLVE-----KSCAIFKIL-SNKKFVLLLD 267 (347)
Q Consensus 233 ~l-------------------~~~~~~------------------~--~~~~~~~-----~~~~l~~~l-~~kr~LlVlD 267 (347)
++ +..... . .....+. ....+..+. +.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 33 110000 0 0011111 112233333 3469999999
Q ss_pred CC-CCcccccccccCCCCCC-----CCcEEE--EecCCh--hHHhhcCCCceeecCCCCHHHHHHHHhhhhCh------h
Q 038882 268 DV-WEPVDLTKVGVPIPNST-----NASKVL--FTTRYK--EVCGKMEAHKKLRVECLTADEAWMLFNVKVGE------D 331 (347)
Q Consensus 268 dv-~~~~~~~~l~~~l~~~~-----~gs~ii--iTtR~~--~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~------~ 331 (347)
|+ |.+..--.+...+.... ....|. .|.+.. ..-........+.|.||+..+...|.....+. +
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~~~p 241 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLLPAP 241 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccccch
Confidence 99 66533222211111110 011222 233322 11222233468999999999999999988763 5
Q ss_pred hHHHHHHHhCCcccCC
Q 038882 332 TIDKIFVKCCCHTFVI 347 (347)
Q Consensus 332 ~~~~I~~~~~G~PLAi 347 (347)
....|+++..|+||.+
T Consensus 242 ~~~~i~~kt~GnPfFi 257 (849)
T COG3899 242 LLELIFEKTKGNPFFI 257 (849)
T ss_pred HHHHHHHHhcCCCccH
Confidence 6889999999999863
No 36
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.79 E-value=7.1e-08 Score=93.95 Aligned_cols=180 Identities=15% Similarity=0.127 Sum_probs=107.3
Q ss_pred CcccchhhhHHHHHHHhhccC-ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQ-VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
..++|.+...+.|.+++..+. ...+.++|+.|+||||+|+.+++.. .... ++. ...+.....++.+...-.
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L-nC~~------~~~-~~pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL-NCET------GVT-STPCEVCATCKAVNEGRF 86 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-CCCc------CCC-CCCCccCHHHHHHhcCCC
Confidence 468999999999999998875 3577899999999999999998876 1111 111 111122222233322110
Q ss_pred CCC---ccccccChHHHHHHHHHH----hcCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCChh-HH-hhc
Q 038882 236 LFS---ESWKNKSLVEKSCAIFKI----LSNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRYKE-VC-GKM 304 (347)
Q Consensus 236 ~~~---~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~~-v~-~~~ 304 (347)
..- +.......++....+... ..++.-++|+|+++.. .....++..+.....+.++|++|.+.. +. ...
T Consensus 87 pDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIl 166 (702)
T PRK14960 87 IDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVI 166 (702)
T ss_pred CceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHH
Confidence 000 000011222222211111 1356679999999765 345555554544445667887776543 22 112
Q ss_pred CCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 305 EAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 305 ~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
.....+++.+++.++..+.+.+.+ .++.+..|++.++|.+
T Consensus 167 SRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdL 213 (702)
T PRK14960 167 SRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSL 213 (702)
T ss_pred HhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 223578999999999999887755 2556788888888864
No 37
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.77 E-value=2.2e-08 Score=87.79 Aligned_cols=92 Identities=17% Similarity=0.182 Sum_probs=62.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCC--CChHHHHHHHH-----HhcCCCCccccccChHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKD--LNLEKVQEDIG-----KKIDLFSESWKNKSLVEK 249 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~--~~~~~~~~~i~-----~~l~~~~~~~~~~~~~~~ 249 (347)
....++|+|++|+|||||++.+++.. .. .+|+.++|+.+... .++.++++.+. .+++.+.. ....-....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l-~~-~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~-~~~~~~~~~ 91 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAI-TK-NHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPE-RHVQVAEMV 91 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-cc-ccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHH-HHHHHHHHH
Confidence 45789999999999999999999987 33 38999999997776 78999999993 33332100 000011122
Q ss_pred HHHHHHH-hcCCcEEEEEeCCCC
Q 038882 250 SCAIFKI-LSNKKFVLLLDDVWE 271 (347)
Q Consensus 250 ~~~l~~~-l~~kr~LlVlDdv~~ 271 (347)
.+....+ -.+++.+|++|++..
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHH
Confidence 2222222 247999999999953
No 38
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.77 E-value=1e-07 Score=83.41 Aligned_cols=157 Identities=13% Similarity=0.158 Sum_probs=93.3
Q ss_pred Ccccchhh-hHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQES-IFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~-~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
+.++|... .+..+.++........+.|+|++|+|||+|++.+++.. . ..-..+.++++.....
T Consensus 23 ~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~-~--~~~~~v~y~~~~~~~~------------- 86 (235)
T PRK08084 23 SFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAEL-S--QRGRAVGYVPLDKRAW------------- 86 (235)
T ss_pred ccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH-H--hCCCeEEEEEHHHHhh-------------
Confidence 44456333 34444444444555789999999999999999999876 2 2223455665532100
Q ss_pred CCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCc---ccccccc-cCCCC-CCCC-cEEEEecCCh---------hH
Q 038882 236 LFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEP---VDLTKVG-VPIPN-STNA-SKVLFTTRYK---------EV 300 (347)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---~~~~~l~-~~l~~-~~~g-s~iiiTtR~~---------~v 300 (347)
...+ +.+.+.. --+|+|||+... ..|+... ..+.. ...| .++|+||+.. ++
T Consensus 87 ---------~~~~----~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L 152 (235)
T PRK08084 87 ---------FVPE----VLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDL 152 (235)
T ss_pred ---------hhHH----HHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHH
Confidence 0001 1111111 247899999653 2343221 11111 1123 4789999754 34
Q ss_pred HhhcCCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCc
Q 038882 301 CGKMEAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCH 343 (347)
Q Consensus 301 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~ 343 (347)
.+.+....+++++++++++-.+++.+.+ .++...-|++.+.|.
T Consensus 153 ~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d 202 (235)
T PRK08084 153 ASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDRE 202 (235)
T ss_pred HHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCC
Confidence 4555566789999999999999988754 256677777777654
No 39
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.76 E-value=1.6e-07 Score=90.27 Aligned_cols=183 Identities=15% Similarity=0.129 Sum_probs=107.3
Q ss_pred CcccchhhhHHHHHHHhhccCc-eEEEEEeCCCCchHHHHHHHHHhhhccCCCCCE-EEEEEecCCCChHHHHHHHHHhc
Q 038882 157 PRIIGQESIFDDVWRCIIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDI-VIWVVVSKDLNLEKVQEDIGKKI 234 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~-~~wv~vs~~~~~~~~~~~i~~~l 234 (347)
..++|-+..+..|.+.+..+.. ..+.++|++|+||||+|+.+++.. ........ ..+..+ ........+....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~L-nc~~~~~~~~~~~~C----~~C~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAV-NCSALITENTTIKTC----EQCTNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh-cCccccccCcCcCCC----CCChHHHHHhcCC
Confidence 4579999999999888877653 578899999999999999999876 21111100 000001 1111122221111
Q ss_pred CCCC---ccccccChHHHHHHHHHH----hcCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEE-ecCChhHHhhc
Q 038882 235 DLFS---ESWKNKSLVEKSCAIFKI----LSNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLF-TTRYKEVCGKM 304 (347)
Q Consensus 235 ~~~~---~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iii-TtR~~~v~~~~ 304 (347)
...- +.......++....+... +.+++-++|+|+++.. ..+..++..+......+.+|+ ||+...+...+
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI 175 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATI 175 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHH
Confidence 0000 000111222222222211 2356779999999875 346666555554455666665 44544444332
Q ss_pred C-CCceeecCCCCHHHHHHHHhhhhC-------hhhHHHHHHHhCCcc
Q 038882 305 E-AHKKLRVECLTADEAWMLFNVKVG-------EDTIDKIFVKCCCHT 344 (347)
Q Consensus 305 ~-~~~~~~l~~L~~~ea~~Lf~~~~~-------~~~~~~I~~~~~G~P 344 (347)
. ....+++.+++.++....+.+.+. ++.+..|++.++|.+
T Consensus 176 ~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~Gsl 223 (507)
T PRK06645 176 ISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSA 223 (507)
T ss_pred HhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 2 234789999999999999987652 456788998888865
No 40
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.76 E-value=3e-06 Score=84.06 Aligned_cols=170 Identities=18% Similarity=0.122 Sum_probs=103.1
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCC---CEEEEEEecCC---CChHHHHHHH
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDF---DIVIWVVVSKD---LNLEKVQEDI 230 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f---~~~~wv~vs~~---~~~~~~~~~i 230 (347)
+.++|++..+..+.+.+.......+.|+|++|+||||||+.+++.. .....+ ...-|+.+... .+...+...+
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 4679999999998888876666789999999999999999998765 322222 12335544321 1222221111
Q ss_pred ---------------HHhcCCCC----------------ccccccChHHHHHHHHHHhcCCcEEEEEeCCCCc--ccccc
Q 038882 231 ---------------GKKIDLFS----------------ESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEP--VDLTK 277 (347)
Q Consensus 231 ---------------~~~l~~~~----------------~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~ 277 (347)
+...+... +..... ....+..|.+.++++++.++.|+.|.. ..|..
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-d~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ 311 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-DPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKY 311 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-CHHHHHHHHHHHhhCeEEeecceeccCCcccchh
Confidence 11111100 001111 233567888888888988887777654 44666
Q ss_pred cccCCCCCCCCcEEEE--ecCChhH-Hhhc-CCCceeecCCCCHHHHHHHHhhhh
Q 038882 278 VGVPIPNSTNASKVLF--TTRYKEV-CGKM-EAHKKLRVECLTADEAWMLFNVKV 328 (347)
Q Consensus 278 l~~~l~~~~~gs~iii--TtR~~~v-~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~ 328 (347)
+...+....+...+++ ||++... ...+ .....+.+.+++.++.+.++.+.+
T Consensus 312 ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a 366 (615)
T TIGR02903 312 IKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAA 366 (615)
T ss_pred hhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHH
Confidence 6655554444444554 5664431 1111 112367899999999999999865
No 41
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=2.3e-07 Score=86.79 Aligned_cols=179 Identities=8% Similarity=0.059 Sum_probs=105.2
Q ss_pred CcccchhhhHHHHHHHhhccC----------ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHH
Q 038882 157 PRIIGQESIFDDVWRCIIEEQ----------VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKV 226 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~----------~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 226 (347)
..++|-+..++.|.+++..+. ..-+.++|++|+|||++|+.++... --.... ...+..-..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l-~c~~~~--------~~~Cg~C~~ 75 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAAL-QCTDPD--------EPGCGECRA 75 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHh-CCCCCC--------CCCCCCCHH
Confidence 467999999999999998753 4568899999999999999998765 111100 011111222
Q ss_pred HHHHHHhcCCC----CccccccChHHHHHHHHHHh-----cCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEec
Q 038882 227 QEDIGKKIDLF----SESWKNKSLVEKSCAIFKIL-----SNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTT 295 (347)
Q Consensus 227 ~~~i~~~l~~~----~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTt 295 (347)
.+.+....... .........++.. .+.+.+ .+++-++|+|+++.. .....++..+.....++.+|++|
T Consensus 76 C~~~~~~~hpD~~~i~~~~~~i~i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a 154 (394)
T PRK07940 76 CRTVLAGTHPDVRVVAPEGLSIGVDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCA 154 (394)
T ss_pred HHHHhcCCCCCEEEeccccccCCHHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEE
Confidence 22222211100 0000111222222 222322 245568899999765 23344444444344566666666
Q ss_pred CCh-hHHhhc-CCCceeecCCCCHHHHHHHHhhh--hChhhHHHHHHHhCCccc
Q 038882 296 RYK-EVCGKM-EAHKKLRVECLTADEAWMLFNVK--VGEDTIDKIFVKCCCHTF 345 (347)
Q Consensus 296 R~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~--~~~~~~~~I~~~~~G~PL 345 (347)
.+. .+...+ .....+.+.+++.++..+.+.+. ..++.+..++..++|.|.
T Consensus 155 ~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~~~~~a~~la~~s~G~~~ 208 (394)
T PRK07940 155 PSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGVDPETARRAARASQGHIG 208 (394)
T ss_pred CChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCCCHHHHHHHHHHcCCCHH
Confidence 654 333222 22358899999999999999754 345667788999999874
No 42
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.75 E-value=4.3e-07 Score=76.70 Aligned_cols=170 Identities=11% Similarity=0.051 Sum_probs=94.8
Q ss_pred HHHHHhhccCc-eEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCC----CCcccc
Q 038882 168 DVWRCIIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDL----FSESWK 242 (347)
Q Consensus 168 ~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~----~~~~~~ 242 (347)
.|.+.+..+.. ..+.++|+.|+|||++|+.+.... ......... .+........+...-.. ......
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l-~~~~~~~~~-------~c~~~~~c~~~~~~~~~d~~~~~~~~~ 74 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKAL-LCEQPGGGE-------PCGECPSCRLIEAGNHPDLHRLEPEGQ 74 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH-cCCCCCCCC-------CCCCCHHHHHHHcCCCCcEEEeccccC
Confidence 45566666655 678999999999999999998876 221111000 00000001111100000 000000
Q ss_pred ccChHHHHHHHHHHh-----cCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCChh-HHhhc-CCCceeecC
Q 038882 243 NKSLVEKSCAIFKIL-----SNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRYKE-VCGKM-EAHKKLRVE 313 (347)
Q Consensus 243 ~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~~-v~~~~-~~~~~~~l~ 313 (347)
....++... +.+.+ .+.+-++|+||++.. ...+.++..+......+.+|++|++.. +...+ .....+.+.
T Consensus 75 ~~~~~~i~~-i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~ 153 (188)
T TIGR00678 75 SIKVDQVRE-LVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFP 153 (188)
T ss_pred cCCHHHHHH-HHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCC
Confidence 111122211 11211 246678999999664 234555555544455667777776542 22111 123478999
Q ss_pred CCCHHHHHHHHhhh-hChhhHHHHHHHhCCcccC
Q 038882 314 CLTADEAWMLFNVK-VGEDTIDKIFVKCCCHTFV 346 (347)
Q Consensus 314 ~L~~~ea~~Lf~~~-~~~~~~~~I~~~~~G~PLA 346 (347)
+++.++..+.+.+. ..++.+..|+..++|.|..
T Consensus 154 ~~~~~~~~~~l~~~gi~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 154 PLSEEALLQWLIRQGISEEAAELLLALAGGSPGA 187 (188)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHcCCCccc
Confidence 99999999988776 4467789999999999863
No 43
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.75 E-value=5.5e-08 Score=97.39 Aligned_cols=157 Identities=22% Similarity=0.293 Sum_probs=93.9
Q ss_pred CcccchhhhHH---HHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHh
Q 038882 157 PRIIGQESIFD---DVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKK 233 (347)
Q Consensus 157 ~~~vGR~~~~~---~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 233 (347)
..|+|.++.+. .|.+.+..+....+.++|++|+||||||+.+++.. ..+|. .++.+. ....+
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~---~lna~~-~~i~d-------- 92 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT---RAHFS---SLNAVL-AGVKD-------- 92 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh---cCcce---eehhhh-hhhHH--------
Confidence 45789888774 56677777777788999999999999999999875 33331 111110 00000
Q ss_pred cCCCCccccccChHHHHHHHHHHh--cCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEE--ecCChh--HHhh-c
Q 038882 234 IDLFSESWKNKSLVEKSCAIFKIL--SNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLF--TTRYKE--VCGK-M 304 (347)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iii--TtR~~~--v~~~-~ 304 (347)
..+......+.+ .+++.+|+|||++.. ..++.+...+ ..|+.+++ ||.+.. +... .
T Consensus 93 ------------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~ 157 (725)
T PRK13341 93 ------------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALV 157 (725)
T ss_pred ------------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhh
Confidence 111111121212 246789999999754 3344443332 23555555 344432 1111 1
Q ss_pred CCCceeecCCCCHHHHHHHHhhhhC--------------hhhHHHHHHHhCCc
Q 038882 305 EAHKKLRVECLTADEAWMLFNVKVG--------------EDTIDKIFVKCCCH 343 (347)
Q Consensus 305 ~~~~~~~l~~L~~~ea~~Lf~~~~~--------------~~~~~~I~~~~~G~ 343 (347)
.....+.+++|+.++...++.+.+. ++.+..|++.+.|.
T Consensus 158 SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD 210 (725)
T PRK13341 158 SRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGD 210 (725)
T ss_pred ccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCC
Confidence 1234789999999999999987542 44567777777764
No 44
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.74 E-value=8.9e-08 Score=81.20 Aligned_cols=157 Identities=20% Similarity=0.231 Sum_probs=84.2
Q ss_pred CcccchhhhHHHHHHHhhc-----cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHH
Q 038882 157 PRIIGQESIFDDVWRCIIE-----EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIG 231 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 231 (347)
.+|+|.++-+..+.-++.. +....+.+||++|+||||||..+++.. ...|. +.+.+.-....++ ..++
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~sg~~i~k~~dl-~~il 96 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---ITSGPAIEKAGDL-AAIL 96 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EEECCC--SCHHH-HHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeE---eccchhhhhHHHH-HHHH
Confidence 5789999888876555432 356789999999999999999999976 44442 2221110111111 1222
Q ss_pred HhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCcc---------cccccccC-CCCCC-----------CCcE
Q 038882 232 KKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPV---------DLTKVGVP-IPNST-----------NASK 290 (347)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---------~~~~l~~~-l~~~~-----------~gs~ 290 (347)
..+ +++-+|.+|++.... ..++.... +...+ +=+-
T Consensus 97 ~~l------------------------~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 97 TNL------------------------KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp HT--------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred Hhc------------------------CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 221 234467777775431 01111000 00111 1233
Q ss_pred EEEecCChhHHhhcCCC--ceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 291 VLFTTRYKEVCGKMEAH--KKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 291 iiiTtR~~~v~~~~~~~--~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
|=-|||...+...+... -..+++..+.+|-.++..+.+ .++.+.+|++.|.|-|
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtP 215 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTP 215 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSH
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCCh
Confidence 45688876665544432 245899999999999998765 3678999999999988
No 45
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=1.5e-07 Score=91.13 Aligned_cols=180 Identities=14% Similarity=0.135 Sum_probs=101.9
Q ss_pred CcccchhhhHHHHHHHhhccCc-eEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
..++|.+..+..|.+.+..+.. ..+.++|+.|+||||+|+.+++.. ....... ...+........+...-.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L-~c~~~~~-------~~pCg~C~sC~~i~~~~~ 87 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCL-NCKTGVT-------AEPCNKCENCVAINNNSF 87 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-CCCCCCC-------CCCCcccHHHHHHhcCCC
Confidence 4679999999999999987654 457899999999999999999866 1111000 000001111111111000
Q ss_pred CCC---ccccccC---hHHHHHHHHHH-hcCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCC-hhHHhhc-
Q 038882 236 LFS---ESWKNKS---LVEKSCAIFKI-LSNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRY-KEVCGKM- 304 (347)
Q Consensus 236 ~~~---~~~~~~~---~~~~~~~l~~~-l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~-~~v~~~~- 304 (347)
..- +...... ..++...+... ..+++-++|+|+++.. ..++.++..+-.....+.+|++|.+ ..+...+
T Consensus 88 ~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~ 167 (546)
T PRK14957 88 IDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTIL 167 (546)
T ss_pred CceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHH
Confidence 000 0000011 11222222211 2356779999999764 3455565555544456666655543 3333222
Q ss_pred CCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 305 EAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 305 ~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
.....+++.+++.++....+.+.+ .++.+..|++.++|.+
T Consensus 168 SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~Gdl 214 (546)
T PRK14957 168 SRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSL 214 (546)
T ss_pred HheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 223588999999999888887643 2456678888888854
No 46
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.73 E-value=1.6e-07 Score=92.12 Aligned_cols=182 Identities=12% Similarity=0.132 Sum_probs=106.9
Q ss_pred CcccchhhhHHHHHHHhhccCc-eEEEEEeCCCCchHHHHHHHHHhhhccCCCC--CEEEEEEecCCCChHHHHHHHHHh
Q 038882 157 PRIIGQESIFDDVWRCIIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCHERHDF--DIVIWVVVSKDLNLEKVQEDIGKK 233 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f--~~~~wv~vs~~~~~~~~~~~i~~~ 233 (347)
.+++|-+..++.|.+++..+.. ..+.++|+.|+||||+|+.+.+.. .-.... .... ...+.....++.|...
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~L-nC~~~~~~~~~~----~~pCg~C~~C~~i~~g 90 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSL-NCQGPDGQGGIT----ATPCGVCQACRDIDSG 90 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-cCCCcccccCCC----CCCCCccHHHHHHHcC
Confidence 4679999999999999988765 456899999999999999998776 111100 0000 0122223333333211
Q ss_pred cCCCC---ccccccChHHHHHHHHHHh-----cCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCC-hhHHh
Q 038882 234 IDLFS---ESWKNKSLVEKSCAIFKIL-----SNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRY-KEVCG 302 (347)
Q Consensus 234 l~~~~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~-~~v~~ 302 (347)
-...- +.......++....+ +.. .++.-++|||+++.. ..++.++..+......+++|++|.+ ..+..
T Consensus 91 ~h~D~~eldaas~~~Vd~iReli-~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~ 169 (618)
T PRK14951 91 RFVDYTELDAASNRGVDEVQQLL-EQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 (618)
T ss_pred CCCceeecCcccccCHHHHHHHH-HHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhH
Confidence 10000 000111222222222 221 235568999999775 3455565555544556667665543 33322
Q ss_pred -hcCCCceeecCCCCHHHHHHHHhhhhC-------hhhHHHHHHHhCCcc
Q 038882 303 -KMEAHKKLRVECLTADEAWMLFNVKVG-------EDTIDKIFVKCCCHT 344 (347)
Q Consensus 303 -~~~~~~~~~l~~L~~~ea~~Lf~~~~~-------~~~~~~I~~~~~G~P 344 (347)
.......+++++++.++..+.+.+.+. ++.+..|++.++|.+
T Consensus 170 TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~Gsl 219 (618)
T PRK14951 170 TVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSM 219 (618)
T ss_pred HHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 222235789999999999988887542 456788888888864
No 47
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=1.6e-07 Score=90.74 Aligned_cols=179 Identities=12% Similarity=0.103 Sum_probs=103.5
Q ss_pred CcccchhhhHHHHHHHhhccCce-EEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVG-IIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
.+++|-+..++.|.+++..+... .+.++|++|+||||+|+.+++.. .-...+. ...++....++.|...-.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l-~c~~~~~-------~~pCg~C~~C~~i~~g~~ 87 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCL-NCEKGVS-------ANPCNDCENCREIDEGRF 87 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHh-cCCCCCC-------cccCCCCHHHHHHhcCCC
Confidence 46899999999999999887655 46899999999999999999876 2111111 011111122222211100
Q ss_pred CCC---ccccccChHHHHHHHHHHh-----cCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCCh-hHHhhc
Q 038882 236 LFS---ESWKNKSLVEKSCAIFKIL-----SNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRYK-EVCGKM 304 (347)
Q Consensus 236 ~~~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~-~v~~~~ 304 (347)
..- +.......++... +.+.+ .++.-++|+|+++.. ...+.++..+......+++|++|.+. .+...+
T Consensus 88 ~d~~eidaas~~~v~~iR~-l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI 166 (509)
T PRK14958 88 PDLFEVDAASRTKVEDTRE-LLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTV 166 (509)
T ss_pred ceEEEEcccccCCHHHHHH-HHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHH
Confidence 000 0000112222221 11111 356679999999775 34555555554445567777665443 222111
Q ss_pred -CCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 305 -EAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 305 -~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
.....+++.+++.++....+.+.+ .++.+..|++.++|.|
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~Gsl 214 (509)
T PRK14958 167 LSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSV 214 (509)
T ss_pred HHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcH
Confidence 122468899999998877766554 2456778888888865
No 48
>PRK04195 replication factor C large subunit; Provisional
Probab=98.72 E-value=1.4e-07 Score=91.34 Aligned_cols=162 Identities=17% Similarity=0.215 Sum_probs=100.3
Q ss_pred CcccchhhhHHHHHHHhhcc----CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHH
Q 038882 157 PRIIGQESIFDDVWRCIIEE----QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGK 232 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~----~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 232 (347)
..++|.++.++.|.+|+..- ..+.+.|+|++|+||||+|+.+++.. .|+ .+-++.+...+. ..+..++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-----~~~-~ielnasd~r~~-~~i~~~i~ 86 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-----GWE-VIELNASDQRTA-DVIERVAG 86 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCC-EEEEcccccccH-HHHHHHHH
Confidence 46899999999999998752 26789999999999999999999876 132 222333332222 22333332
Q ss_pred hcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCccc------ccccccCCCCCCCCcEEEEecCChh-HHh-hc
Q 038882 233 KIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPVD------LTKVGVPIPNSTNASKVLFTTRYKE-VCG-KM 304 (347)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~------~~~l~~~l~~~~~gs~iiiTtR~~~-v~~-~~ 304 (347)
...... .....++-+||||+++.... +..+...+. ..+..||+|+.+.. ... .+
T Consensus 87 ~~~~~~----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 87 EAATSG----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HhhccC----------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhH
Confidence 221100 00113678999999976522 333332222 23345666664432 111 11
Q ss_pred -CCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCc
Q 038882 305 -EAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCH 343 (347)
Q Consensus 305 -~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~ 343 (347)
.....+.+.+++.++....+.+.+ .++.+..|++.++|.
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GD 195 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGD 195 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 223578999999999988887754 356788888888874
No 49
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=1.1e-07 Score=89.77 Aligned_cols=186 Identities=15% Similarity=0.155 Sum_probs=109.0
Q ss_pred CcccchhhhHHHHHHHhhccCce-EEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEE-ecCCCChHHHHHHHHHhc
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVG-IIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVV-VSKDLNLEKVQEDIGKKI 234 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~-vs~~~~~~~~~~~i~~~l 234 (347)
..++|.+.-.+.|.+++.++... .+.++|++|+||||+|+.+++.. .-...+....|.. ....+..-...+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l-~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAV-NCQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHh-cCCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 46799999999999999887655 48899999999999999999877 2211111111110 111222223333333221
Q ss_pred CCCCccc---cccChHHHHHHHHHHh-----cCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEec-CChhHHhh
Q 038882 235 DLFSESW---KNKSLVEKSCAIFKIL-----SNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTT-RYKEVCGK 303 (347)
Q Consensus 235 ~~~~~~~---~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTt-R~~~v~~~ 303 (347)
...-... .....++... +.+.+ .+++-++|+|+++.. ..++.+...+......+.+|++| +...+...
T Consensus 95 ~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~t 173 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (397)
T ss_pred CCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHH
Confidence 1100000 1111233322 33333 245668999999765 34566655555444566666655 43333322
Q ss_pred cC-CCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 304 ME-AHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 304 ~~-~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
+. ....+++.+++.++..+.+...+ .++.+..|+..++|.+
T Consensus 174 l~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~l 222 (397)
T PRK14955 174 IASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSM 222 (397)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 21 12468899999999988888754 3567888888988865
No 50
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.71 E-value=1.1e-07 Score=93.51 Aligned_cols=179 Identities=12% Similarity=0.124 Sum_probs=107.7
Q ss_pred CcccchhhhHHHHHHHhhccCce-EEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVG-IIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
..++|.+..+..|.+.+..+... .+.++|+.|+||||+|+.+++.. .....+ .+..+.....++.|...-.
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L-~c~~~~-------~~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGL-NCETGI-------TATPCGECDNCREIEQGRF 87 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh-hhccCC-------CCCCCCCCHHHHHHHcCCC
Confidence 56899999999999999887654 46899999999999999998876 111110 0112222234444432111
Q ss_pred CCC---ccccccChHHHHHHHHHH-----hcCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCCh-hHHhh-
Q 038882 236 LFS---ESWKNKSLVEKSCAIFKI-----LSNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRYK-EVCGK- 303 (347)
Q Consensus 236 ~~~---~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~-~v~~~- 303 (347)
..- +.......++.. .+.+. ..+++-++|||+++.. ...+.++..+-......++|++|.+. .+...
T Consensus 88 ~D~ieidaas~~~VddiR-~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI 166 (647)
T PRK07994 88 VDLIEIDAASRTKVEDTR-ELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (647)
T ss_pred CCceeecccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHH
Confidence 000 000011222222 22222 2456779999999765 34555555554444556666655543 33222
Q ss_pred cCCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 304 MEAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 304 ~~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
......|.+.+|+.++....+.+.+ .++.+..|++.++|.|
T Consensus 167 ~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~ 214 (647)
T PRK07994 167 LSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSM 214 (647)
T ss_pred HhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 1223578999999999999998754 2456778888998865
No 51
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=2.8e-07 Score=88.29 Aligned_cols=178 Identities=12% Similarity=0.129 Sum_probs=99.5
Q ss_pred CcccchhhhHHHHHHHhhccCc-eEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
..++|.++....|...+..+.. ..+.++|++|+||||+|+.+++.. ....... ..++........+...-.
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l-~~~~~~~-------~~pc~~c~~c~~i~~g~~ 85 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSL-NCENRKG-------VEPCNECRACRSIDEGTF 85 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-ccccCCC-------CCCCcccHHHHHHhcCCC
Confidence 4689999988888888887765 457899999999999999998876 2111000 000111111111111000
Q ss_pred CCC---ccccccChHHHHHHHHHHh-----cCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCC-hhHHhhc
Q 038882 236 LFS---ESWKNKSLVEKSCAIFKIL-----SNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRY-KEVCGKM 304 (347)
Q Consensus 236 ~~~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~-~~v~~~~ 304 (347)
..- +.......++. ..+.+.. .+++-++|+|+++.. ...+.++..+......+.+|++|.+ ..+...+
T Consensus 86 ~dv~el~aa~~~gid~i-R~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L 164 (472)
T PRK14962 86 MDVIELDAASNRGIDEI-RKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTI 164 (472)
T ss_pred CccEEEeCcccCCHHHH-HHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHH
Confidence 000 00001111111 1222222 245679999999654 3344444444433334555555444 3333222
Q ss_pred C-CCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCc
Q 038882 305 E-AHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCH 343 (347)
Q Consensus 305 ~-~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~ 343 (347)
. ....+.+.+++.++....+.+.+ .++.+..|++.++|.
T Consensus 165 ~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~Gd 211 (472)
T PRK14962 165 ISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGG 211 (472)
T ss_pred hcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCC
Confidence 2 23578999999999988888764 256678888888764
No 52
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=2.1e-07 Score=88.92 Aligned_cols=180 Identities=16% Similarity=0.123 Sum_probs=106.1
Q ss_pred CcccchhhhHHHHHHHhhccCce-EEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVG-IIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
.+++|.+..++.|.+.+..+... .+.++|+.|+||||+|+.++... .-..... ..++........|.....
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~L-nC~~~~~-------~~pCg~C~~C~~i~~~~~ 84 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCL-NCSNGPT-------SDPCGTCHNCISIKNSNH 84 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHH-cCcCCCC-------CCCccccHHHHHHhccCC
Confidence 46799999999999988877655 78999999999999999998754 1100000 011122222333322211
Q ss_pred CCCc---cccccChHHHHHHHHHH----hcCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCC-hhHHhhc-
Q 038882 236 LFSE---SWKNKSLVEKSCAIFKI----LSNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRY-KEVCGKM- 304 (347)
Q Consensus 236 ~~~~---~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~-~~v~~~~- 304 (347)
..-- .......++....+... +.+++-++|+|+++.. ..++.++..+......+++|++|.. ..+...+
T Consensus 85 ~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~ 164 (491)
T PRK14964 85 PDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTII 164 (491)
T ss_pred CCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHH
Confidence 1000 00011122221111111 1246678999999665 3355555555444556767766543 3443322
Q ss_pred CCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 305 EAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 305 ~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
.....+++.+++.++....+.+.+ .++.+..|++.++|.+
T Consensus 165 SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~Gsl 211 (491)
T PRK14964 165 SRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSM 211 (491)
T ss_pred HhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 223578999999999999988764 2567788999998865
No 53
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.68 E-value=5.6e-07 Score=83.80 Aligned_cols=167 Identities=13% Similarity=0.183 Sum_probs=101.7
Q ss_pred CcccchhhhHHHHHHHhhccCc-eEEEEEeCCCCchHHHHHHHHHhhhccCC--------------------CCCEEEEE
Q 038882 157 PRIIGQESIFDDVWRCIIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCHERH--------------------DFDIVIWV 215 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--------------------~f~~~~wv 215 (347)
..++|.+..++.|.+++..+.. ..+.++|++|+|||++|+.+.... .... +++. .++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l-~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~ 91 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKAL-NCQNGPDGEPCNECESCKEINSGSSLDV-IEI 91 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEe
Confidence 4679999999999999987654 467899999999999999998876 2111 1111 111
Q ss_pred EecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHH-hcCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEE
Q 038882 216 VVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKI-LSNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVL 292 (347)
Q Consensus 216 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ii 292 (347)
..+...... -.+++...+ ... ..+++-++|+|+++.. .....+...+......+.+|
T Consensus 92 ~~~~~~~~~-~~~~l~~~~-------------------~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lI 151 (355)
T TIGR02397 92 DAASNNGVD-DIREILDNV-------------------KYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFI 151 (355)
T ss_pred eccccCCHH-HHHHHHHHH-------------------hcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEE
Confidence 111100100 011111111 110 1245568999998654 33445545554444566777
Q ss_pred EecCChh-HHhhc-CCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCccc
Q 038882 293 FTTRYKE-VCGKM-EAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHTF 345 (347)
Q Consensus 293 iTtR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~PL 345 (347)
++|.+.. +...+ .....+++.+++.++..+++.+.+ .++.+..|+..++|.|-
T Consensus 152 l~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~ 213 (355)
T TIGR02397 152 LATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLR 213 (355)
T ss_pred EEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChH
Confidence 7765544 22221 223478899999999988887644 35677888999998773
No 54
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.68 E-value=5.6e-07 Score=83.51 Aligned_cols=187 Identities=12% Similarity=0.010 Sum_probs=110.0
Q ss_pred CcccchhhhHHHHHHHhhccCce-EEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEE-E--EEecCCCChHHHHHHHHH
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVG-IIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVI-W--VVVSKDLNLEKVQEDIGK 232 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~-w--v~vs~~~~~~~~~~~i~~ 232 (347)
..++|.+...+.|.+.+..+... .+.++|+.|+||+|+|..+..... -........ - ...-..+......+.+..
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Ll-c~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~ 97 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLL-ATPPPGGDGAVPPPTSLAIDPDHPVARRIAA 97 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHh-CCCCCCCCccccccccccCCCCChHHHHHHc
Confidence 56899999999999999887654 588999999999999999988762 111110000 0 000000011122333322
Q ss_pred hcCCC----C----cc----ccccChHHHHHHHHHHhc-----CCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEE
Q 038882 233 KIDLF----S----ES----WKNKSLVEKSCAIFKILS-----NKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLF 293 (347)
Q Consensus 233 ~l~~~----~----~~----~~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iii 293 (347)
.-... . +. ......++ +..+.+.+. +++-++|+|+++.. .....++..+.....++.+|+
T Consensus 98 ~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL 176 (365)
T PRK07471 98 GAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLL 176 (365)
T ss_pred cCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEE
Confidence 11110 0 00 01112233 334444443 46779999999664 334445444444445666777
Q ss_pred ecCChh-HHhhc-CCCceeecCCCCHHHHHHHHhhhhCh---hhHHHHHHHhCCccc
Q 038882 294 TTRYKE-VCGKM-EAHKKLRVECLTADEAWMLFNVKVGE---DTIDKIFVKCCCHTF 345 (347)
Q Consensus 294 TtR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~---~~~~~I~~~~~G~PL 345 (347)
+|.+.. +...+ .....+.+.+++.++..+++.+.... +....++..++|.|+
T Consensus 177 ~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~~~~~~~l~~~s~Gsp~ 233 (365)
T PRK07471 177 VSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLPDDPRAALAALAEGSVG 233 (365)
T ss_pred EECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCCHHHHHHHHHHcCCCHH
Confidence 776654 22222 22347899999999999999887542 223678999999996
No 55
>PRK09087 hypothetical protein; Validated
Probab=98.66 E-value=2.1e-07 Score=80.80 Aligned_cols=129 Identities=14% Similarity=0.123 Sum_probs=79.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKI 256 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 256 (347)
..+.+.|+|++|+|||+|++.++... . ..|++.. .+..+++. .
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~-~-------~~~i~~~------~~~~~~~~-----------------------~ 85 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS-D-------ALLIHPN------EIGSDAAN-----------------------A 85 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc-C-------CEEecHH------HcchHHHH-----------------------h
Confidence 34679999999999999999888654 1 1133221 11111111 1
Q ss_pred hcCCcEEEEEeCCCCcc-cccccccCCCC-CCCCcEEEEecCC---------hhHHhhcCCCceeecCCCCHHHHHHHHh
Q 038882 257 LSNKKFVLLLDDVWEPV-DLTKVGVPIPN-STNASKVLFTTRY---------KEVCGKMEAHKKLRVECLTADEAWMLFN 325 (347)
Q Consensus 257 l~~kr~LlVlDdv~~~~-~~~~l~~~l~~-~~~gs~iiiTtR~---------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~ 325 (347)
+.+ -+|++||+.... +-+.+...+.. ...|..+|+|++. +++.+.+.....+++++++.++-.+++.
T Consensus 86 ~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 86 AAE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred hhc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 111 278889996531 11122222211 2346779998874 3345555666789999999999999999
Q ss_pred hhhC-------hhhHHHHHHHhCCcc
Q 038882 326 VKVG-------EDTIDKIFVKCCCHT 344 (347)
Q Consensus 326 ~~~~-------~~~~~~I~~~~~G~P 344 (347)
+.+. ++..+-|++.+.|..
T Consensus 164 ~~~~~~~~~l~~ev~~~La~~~~r~~ 189 (226)
T PRK09087 164 KLFADRQLYVDPHVVYYLVSRMERSL 189 (226)
T ss_pred HHHHHcCCCCCHHHHHHHHHHhhhhH
Confidence 8762 566777777776643
No 56
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.65 E-value=9.8e-08 Score=87.60 Aligned_cols=99 Identities=16% Similarity=0.181 Sum_probs=65.2
Q ss_pred HHHHhhc-cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCC--ChHHHHHHHHHhcCCCCccccccC
Q 038882 169 VWRCIIE-EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDL--NLEKVQEDIGKKIDLFSESWKNKS 245 (347)
Q Consensus 169 l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~ 245 (347)
+++++.. ......+|+|++|+|||||++.+++.. .. .+|+.++||.+.... .+.++++.+...+-.. ..+...
T Consensus 159 vID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I-~~-nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~s--t~d~~~ 234 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSI-TT-NHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAS--TFDEPA 234 (416)
T ss_pred eeeeecccccCceEEEeCCCCCChhHHHHHHHHHH-Hh-hcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEE--CCCCCH
Confidence 3344433 345788999999999999999999987 33 389999999998887 7788888886322111 111111
Q ss_pred hH-----HHHHHHHHH--hcCCcEEEEEeCCCC
Q 038882 246 LV-----EKSCAIFKI--LSNKKFVLLLDDVWE 271 (347)
Q Consensus 246 ~~-----~~~~~l~~~--l~~kr~LlVlDdv~~ 271 (347)
.. ...-...++ -.+++.+|++|++..
T Consensus 235 ~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 235 ERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 11 111112222 257999999999953
No 57
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.63 E-value=5.4e-07 Score=88.87 Aligned_cols=180 Identities=14% Similarity=0.180 Sum_probs=117.0
Q ss_pred CcccchhhhHHHHHHHhhc-cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCC-CChHHHHHHHHHhc
Q 038882 157 PRIIGQESIFDDVWRCIIE-EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKD-LNLEKVQEDIGKKI 234 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l 234 (347)
...+-|.. |.+.|.. .+.+.+.|..|+|.|||||+..+... ...-..+.|.++++. .++..++..++..+
T Consensus 19 ~~~v~R~r----L~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~----~~~~~~v~Wlslde~dndp~rF~~yLi~al 90 (894)
T COG2909 19 DNYVVRPR----LLDRLRRANDYRLILISAPAGFGKTTLLAQWREL----AADGAAVAWLSLDESDNDPARFLSYLIAAL 90 (894)
T ss_pred ccccccHH----HHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHh----cCcccceeEeecCCccCCHHHHHHHHHHHH
Confidence 45576755 4444554 37899999999999999999999863 244457899998765 56888888888887
Q ss_pred CCCCcc-----------ccccChHHHHHHHHHHhc--CCcEEEEEeCCCCcc--c-ccccccCCCCCCCCcEEEEecCCh
Q 038882 235 DLFSES-----------WKNKSLVEKSCAIFKILS--NKKFVLLLDDVWEPV--D-LTKVGVPIPNSTNASKVLFTTRYK 298 (347)
Q Consensus 235 ~~~~~~-----------~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~--~-~~~l~~~l~~~~~gs~iiiTtR~~ 298 (347)
+...+. ....+...+...+..-+. .+++.+||||..-.. . -..+...+...+.+-.+|+|||+.
T Consensus 91 ~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~r 170 (894)
T COG2909 91 QQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSR 170 (894)
T ss_pred HHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccC
Confidence 632111 112233445555555554 368999999985431 1 122222233455788999999987
Q ss_pred hHHhhc--C-CCceeec----CCCCHHHHHHHHhhhhC----hhhHHHHHHHhCCcc
Q 038882 299 EVCGKM--E-AHKKLRV----ECLTADEAWMLFNVKVG----EDTIDKIFVKCCCHT 344 (347)
Q Consensus 299 ~v~~~~--~-~~~~~~l----~~L~~~ea~~Lf~~~~~----~~~~~~I~~~~~G~P 344 (347)
.-.... . ....+++ -.|+.+|+-++|....+ ...++.+...++|=+
T Consensus 171 P~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~~~teGW~ 227 (894)
T COG2909 171 PQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAADLKALYDRTEGWA 227 (894)
T ss_pred CCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChHHHHHHHhhcccHH
Confidence 432111 1 1122333 35889999999998763 566788888877744
No 58
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.63 E-value=3.3e-07 Score=84.59 Aligned_cols=185 Identities=12% Similarity=0.094 Sum_probs=110.0
Q ss_pred CcccchhhhHHHHHHHhhccCc-eEEEEEeCCCCchHHHHHHHHHhhhccCC-CCCEEEEEEecCCCChHHHHHHHHHhc
Q 038882 157 PRIIGQESIFDDVWRCIIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCHERH-DFDIVIWVVVSKDLNLEKVQEDIGKKI 234 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-~f~~~~wv~vs~~~~~~~~~~~i~~~l 234 (347)
..++|.++....|...+..+.. ..+.|+|+.|+||||+|..+......... .+... .....+.....++.+...-
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~~ 99 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQGA 99 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcCC
Confidence 5689999999999999988754 46889999999999999999987722110 01111 1111111222444443331
Q ss_pred CC-------CC-cc----ccccChHHHHHHHHHHhc-----CCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEec
Q 038882 235 DL-------FS-ES----WKNKSLVEKSCAIFKILS-----NKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTT 295 (347)
Q Consensus 235 ~~-------~~-~~----~~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTt 295 (347)
.. +. .. ......++. ..+.+++. +++-++|+|+++.. ...+.++..+.....++.+|++|
T Consensus 100 hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 100 HPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEE
Confidence 10 00 00 011223333 34455443 46779999999765 23344444443333445555545
Q ss_pred CCh-hHHhhcC-CCceeecCCCCHHHHHHHHhhhh---C--hhhHHHHHHHhCCccc
Q 038882 296 RYK-EVCGKME-AHKKLRVECLTADEAWMLFNVKV---G--EDTIDKIFVKCCCHTF 345 (347)
Q Consensus 296 R~~-~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~---~--~~~~~~I~~~~~G~PL 345 (347)
.+. .+...+. ....+.+.+++.++..+++.+.. + ++.+..|++.++|.|.
T Consensus 179 ~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~~~~~~~~~i~~~s~G~pr 235 (351)
T PRK09112 179 HSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQGSDGEITEALLQRSKGSVR 235 (351)
T ss_pred CChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccCCCHHHHHHHHHHcCCCHH
Confidence 443 3322221 22488999999999999998743 2 4557889999999995
No 59
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.62 E-value=2.8e-07 Score=90.56 Aligned_cols=180 Identities=14% Similarity=0.114 Sum_probs=102.9
Q ss_pred CcccchhhhHHHHHHHhhccCc-eEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
..++|.+..++.|.+++..+.. ..+.++|+.|+||||+|+.+.... ....... + ..+......+.+...-.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~L-nC~~~~~---~----~pCg~C~sCr~i~~g~~ 87 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSL-NCENAQH---G----EPCGVCQSCTQIDAGRY 87 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh-cccCCCC---C----CCCcccHHHHHHhccCc
Confidence 4689999999999999988754 467999999999999999998875 1111110 0 00111111111111100
Q ss_pred CC---CccccccChHHHHHHHHHH----hcCCcEEEEEeCCCCcc--cccccccCCCCCCCCcEEEEecCChh-HHhh-c
Q 038882 236 LF---SESWKNKSLVEKSCAIFKI----LSNKKFVLLLDDVWEPV--DLTKVGVPIPNSTNASKVLFTTRYKE-VCGK-M 304 (347)
Q Consensus 236 ~~---~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTtR~~~-v~~~-~ 304 (347)
.. -+.......+.+...+... ..+++-++|||+++... ....++..+......+++|++|.+.. +... .
T Consensus 88 ~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIr 167 (709)
T PRK08691 88 VDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVL 167 (709)
T ss_pred cceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHH
Confidence 00 0000111122222222111 13566799999997653 23444444433345567777765432 2111 1
Q ss_pred CCCceeecCCCCHHHHHHHHhhhhC-------hhhHHHHHHHhCCcc
Q 038882 305 EAHKKLRVECLTADEAWMLFNVKVG-------EDTIDKIFVKCCCHT 344 (347)
Q Consensus 305 ~~~~~~~l~~L~~~ea~~Lf~~~~~-------~~~~~~I~~~~~G~P 344 (347)
+....|.+.+++.++....+.+.+. ++.+..|++.++|.+
T Consensus 168 SRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~Gsl 214 (709)
T PRK08691 168 SRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSM 214 (709)
T ss_pred HHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCH
Confidence 1124678899999999998887653 456788999998875
No 60
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.62 E-value=3e-07 Score=89.34 Aligned_cols=179 Identities=18% Similarity=0.148 Sum_probs=104.4
Q ss_pred CcccchhhhHHHHHHHhhccCc-eEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
..++|++..++.|.+++..+.. +.+.++|+.|+||||+|+.++... .... |... ..+.....++.+.....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L-~C~~------~~~~-~~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAI-NCLN------PKDG-DCCNSCSVCESINTNQS 87 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh-cCCC------CCCC-CCCcccHHHHHHHcCCC
Confidence 4679999999999999877644 468899999999999999998876 2111 2111 11222233333322211
Q ss_pred CCCccc---cccChHHHHHHHHHHh-----cCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCC-hhHHhh-
Q 038882 236 LFSESW---KNKSLVEKSCAIFKIL-----SNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRY-KEVCGK- 303 (347)
Q Consensus 236 ~~~~~~---~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~-~~v~~~- 303 (347)
..-... .....++.. .+.+.+ .+++-++|+|+++.. ..+..++..+......+.+|++|.. ..+...
T Consensus 88 ~DiieIdaas~igVd~IR-eIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI 166 (605)
T PRK05896 88 VDIVELDAASNNGVDEIR-NIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTI 166 (605)
T ss_pred CceEEeccccccCHHHHH-HHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHH
Confidence 100000 011122221 122211 234457999999764 3455554444433445566655543 333222
Q ss_pred cCCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 304 MEAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 304 ~~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
......+++.+++.++....+.+.+ .++.+..|+..++|.|
T Consensus 167 ~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~Gdl 214 (605)
T PRK05896 167 ISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSL 214 (605)
T ss_pred HhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcH
Confidence 2223578999999999998888743 3567788899998865
No 61
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=5.8e-07 Score=87.51 Aligned_cols=179 Identities=11% Similarity=0.115 Sum_probs=102.9
Q ss_pred CcccchhhhHHHHHHHhhccCce-EEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVG-IIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
..++|.++.++.|.+++..+... .+.++|+.|+||||+|+.+.... ....... ...+........+...-.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l-~c~~~~~-------~~pcg~C~~C~~i~~~~~ 87 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSL-NCETGVT-------ATPCGVCSACLEIDSGRF 87 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHh-cCCCCCC-------CCCCCCCHHHHHHhcCCC
Confidence 46799999999999999886554 56899999999999999998876 1111000 001111111122211000
Q ss_pred CC---CccccccChHHHHHHHHHHh-----cCCcEEEEEeCCCCcc--cccccccCCCCCCCCcEEEEecCCh-hHHhhc
Q 038882 236 LF---SESWKNKSLVEKSCAIFKIL-----SNKKFVLLLDDVWEPV--DLTKVGVPIPNSTNASKVLFTTRYK-EVCGKM 304 (347)
Q Consensus 236 ~~---~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTtR~~-~v~~~~ 304 (347)
.. -+.......++... +.+.. .+++-++|+|+++... ..+.++..+......+.+|++|.+. .+...+
T Consensus 88 ~d~~ei~~~~~~~vd~ir~-l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI 166 (527)
T PRK14969 88 VDLIEVDAASNTQVDAMRE-LLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTV 166 (527)
T ss_pred CceeEeeccccCCHHHHHH-HHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhH
Confidence 00 00000111222221 22211 3566799999997653 3455555554444566666666443 222111
Q ss_pred -CCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 305 -EAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 305 -~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
.....+++.+++.++..+.+.+.+ .++.+..|++.++|.+
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gsl 214 (527)
T PRK14969 167 LSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSM 214 (527)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 112478999999999998887754 2455688888888865
No 62
>PRK05642 DNA replication initiation factor; Validated
Probab=98.60 E-value=4.1e-07 Score=79.50 Aligned_cols=136 Identities=13% Similarity=0.238 Sum_probs=82.9
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHHh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKIL 257 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 257 (347)
...+.|+|..|+|||.|++.+++.. ..+ -..++|++... +... ...+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~-~~~--~~~v~y~~~~~------~~~~--------------------~~~~~~~~ 95 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF-EQR--GEPAVYLPLAE------LLDR--------------------GPELLDNL 95 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-HhC--CCcEEEeeHHH------HHhh--------------------hHHHHHhh
Confidence 3678999999999999999998876 222 23456665432 1110 01222333
Q ss_pred cCCcEEEEEeCCCCc---ccccc-cccCCCC-CCCCcEEEEecCChh---------HHhhcCCCceeecCCCCHHHHHHH
Q 038882 258 SNKKFVLLLDDVWEP---VDLTK-VGVPIPN-STNASKVLFTTRYKE---------VCGKMEAHKKLRVECLTADEAWML 323 (347)
Q Consensus 258 ~~kr~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~iiiTtR~~~---------v~~~~~~~~~~~l~~L~~~ea~~L 323 (347)
.+-. +|++||+... ..|+. +...+.. ...|..+|+|++... +.+.+.....+++++++.++-.++
T Consensus 96 ~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~i 174 (234)
T PRK05642 96 EQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRA 174 (234)
T ss_pred hhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHH
Confidence 3322 6789999643 34433 2222211 234677899887542 233334446789999999999999
Q ss_pred Hhhhh-------ChhhHHHHHHHhCCc
Q 038882 324 FNVKV-------GEDTIDKIFVKCCCH 343 (347)
Q Consensus 324 f~~~~-------~~~~~~~I~~~~~G~ 343 (347)
+++++ .++...-|++.+.|.
T Consensus 175 l~~ka~~~~~~l~~ev~~~L~~~~~~d 201 (234)
T PRK05642 175 LQLRASRRGLHLTDEVGHFILTRGTRS 201 (234)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhcCCC
Confidence 98544 355666677666654
No 63
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=9.7e-07 Score=82.62 Aligned_cols=168 Identities=14% Similarity=0.191 Sum_probs=98.2
Q ss_pred CcccchhhhHHHHHHHhhccCc-eEEEEEeCCCCchHHHHHHHHHhhhccC------CCCCEEE-EEEecCCCChHHHHH
Q 038882 157 PRIIGQESIFDDVWRCIIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCHER------HDFDIVI-WVVVSKDLNLEKVQE 228 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~------~~f~~~~-wv~vs~~~~~~~~~~ 228 (347)
..++|.+...+.+.+.+..+.. +.+.++|++|+|||++|+.+.+.. ... ..|...+ -+........ +..+
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~i~ 94 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKI-NQPGYDDPNEDFSFNIFELDAASNNSV-DDIR 94 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-cCCCCCCCCCCCCcceEEeccccCCCH-HHHH
Confidence 4579999999999999987654 478899999999999999998775 211 1121111 1111111111 1111
Q ss_pred HHHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCcc--cccccccCCCCCCCCcEEEEecC-ChhHHhh-c
Q 038882 229 DIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPV--DLTKVGVPIPNSTNASKVLFTTR-YKEVCGK-M 304 (347)
Q Consensus 229 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTtR-~~~v~~~-~ 304 (347)
+++.++... -..+++-++++|+++... .+..+...+......+.+|++|. ...+... .
T Consensus 95 ~l~~~~~~~------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 95 NLIDQVRIP------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTIL 156 (367)
T ss_pred HHHHHHhhc------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHH
Confidence 222211100 012355689999986542 34444433433334455665553 3222221 1
Q ss_pred CCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 305 EAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 305 ~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
.....++..+++.++....+...+ .++.+..|+..++|.+
T Consensus 157 sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdl 203 (367)
T PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGAL 203 (367)
T ss_pred hcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCH
Confidence 223478999999999988887643 3567788888888754
No 64
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.59 E-value=1.9e-07 Score=87.25 Aligned_cols=163 Identities=15% Similarity=0.186 Sum_probs=96.5
Q ss_pred CcccchhhhHHHHHHHhhcc-------------CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCCh
Q 038882 157 PRIIGQESIFDDVWRCIIEE-------------QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNL 223 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~-------------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 223 (347)
..+.|+++.++.|.+.+... ..+-+.++|++|+|||+||+.+++.. ...| +.+..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~-----~~v~~---- 189 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVVG---- 189 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCE-----Eecch----
Confidence 46899999999998876421 24568999999999999999999876 3333 22211
Q ss_pred HHHHHHHHHhcCCCCccccccChHHHHHHHHHHh-cCCcEEEEEeCCCCcc----------------cccccccCCC--C
Q 038882 224 EKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKIL-SNKKFVLLLDDVWEPV----------------DLTKVGVPIP--N 284 (347)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~----------------~~~~l~~~l~--~ 284 (347)
..+.... ++ . .......+.+.. ...+.+|+|||++... .+..+...+. .
T Consensus 190 ~~l~~~~---~g--------~-~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 SELVRKY---IG--------E-GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred HHHHHHh---hh--------H-HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 1111110 11 0 111122222222 3467899999996531 0111111111 1
Q ss_pred CCCCcEEEEecCChhHH-----hhcCCCceeecCCCCHHHHHHHHhhhhC------hhhHHHHHHHhCCc
Q 038882 285 STNASKVLFTTRYKEVC-----GKMEAHKKLRVECLTADEAWMLFNVKVG------EDTIDKIFVKCCCH 343 (347)
Q Consensus 285 ~~~gs~iiiTtR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~~~------~~~~~~I~~~~~G~ 343 (347)
...+.+||.||...... ........+.++..+.++..++|..... +-....+++.+.|.
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~ 327 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGA 327 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCC
Confidence 23467788888765422 1112235789999999999999987652 12466777777765
No 65
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.58 E-value=8.1e-07 Score=90.21 Aligned_cols=179 Identities=10% Similarity=0.078 Sum_probs=106.0
Q ss_pred CcccchhhhHHHHHHHhhccCce-EEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVG-IIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
..++|.+..++.|.+++..+... .+.++|+.|+||||+|+.+.+.+ .-..... ...+.....++.|...-.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L-~C~~~~~-------~~pCg~C~sC~~~~~g~~ 86 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSL-NCVEGPT-------STPCGECDSCVALAPGGP 86 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh-CcccCCC-------CCCCcccHHHHHHHcCCC
Confidence 46799999999999999887654 47899999999999999999877 2111110 001111112222221100
Q ss_pred CCC-----ccccccChHHHHHHHHHH-----hcCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCC-hhHHh
Q 038882 236 LFS-----ESWKNKSLVEKSCAIFKI-----LSNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRY-KEVCG 302 (347)
Q Consensus 236 ~~~-----~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~-~~v~~ 302 (347)
... +.......++... +.+. ..++.-++|||+++.. ..++.|+..+..-...+.+|++|.+ ..+..
T Consensus 87 ~~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~ 165 (824)
T PRK07764 87 GSLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIG 165 (824)
T ss_pred CCCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 000 0000112222222 2222 2356678999999775 3455565555555556666665543 33433
Q ss_pred hcC-CCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 303 KME-AHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 303 ~~~-~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
.+. ....|++..++.++..+++.+.+ .++.+..|++.++|.+
T Consensus 166 TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdl 215 (824)
T PRK07764 166 TIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSV 215 (824)
T ss_pred HHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 222 23578999999999988887754 2445677888888865
No 66
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.56 E-value=7.5e-07 Score=87.54 Aligned_cols=182 Identities=15% Similarity=0.131 Sum_probs=107.4
Q ss_pred CcccchhhhHHHHHHHhhccCce-EEEEEeCCCCchHHHHHHHHHhhhccCCCCC--EEEEEEecCCCChHHHHHHHHHh
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVG-IIGLYGAGGVGKTTLLKQLNNKLCHERHDFD--IVIWVVVSKDLNLEKVQEDIGKK 233 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~--~~~wv~vs~~~~~~~~~~~i~~~ 233 (347)
..++|.+..++.|.+++..+... .+.++|+.|+||||+|+.+++.. .-..... ...+ ..+......+.|...
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L-~c~~~~~~~~~~~----~~cg~c~~C~~i~~g 98 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARAL-NYEGPDGDGGPTI----DLCGVGEHCQAIMEG 98 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhh-CcCCccccCCCcc----ccCcccHHHHHHhcC
Confidence 46899999999999999887544 68899999999999999999876 2111110 0000 011112223333322
Q ss_pred cCCCC---ccccccChHHHHHHHHHHh-----cCCcEEEEEeCCCCcc--cccccccCCCCCCCCcEEEEec-CChhHHh
Q 038882 234 IDLFS---ESWKNKSLVEKSCAIFKIL-----SNKKFVLLLDDVWEPV--DLTKVGVPIPNSTNASKVLFTT-RYKEVCG 302 (347)
Q Consensus 234 l~~~~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTt-R~~~v~~ 302 (347)
....- +.......++.. .+.+.+ .+++-++|+|+++... ..+.++..+.....++.+|++| ....+..
T Consensus 99 ~h~Dv~e~~a~s~~gvd~IR-eIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~ 177 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDDIR-EIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPV 177 (598)
T ss_pred CCCceEEecccccCCHHHHH-HHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhH
Confidence 21100 000112222222 222222 2456689999996653 3555555554444566676655 3333332
Q ss_pred hcC-CCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 303 KME-AHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 303 ~~~-~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
.+. ....+++.+++.++....+.+.+ .++.+..|++.++|.+
T Consensus 178 tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdl 227 (598)
T PRK09111 178 TVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSV 227 (598)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 222 23478999999999999988754 3567788899998876
No 67
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=1.9e-06 Score=84.88 Aligned_cols=187 Identities=16% Similarity=0.169 Sum_probs=106.9
Q ss_pred CcccchhhhHHHHHHHhhccCce-EEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEE-ecCCCChHHHHHHHHHhc
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVG-IIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVV-VSKDLNLEKVQEDIGKKI 234 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~-vs~~~~~~~~~~~i~~~l 234 (347)
..++|.+..+..|.+++..+... .+.++|+.|+||||+|+.+.+.. --....+.-.|.. ....+.....++.+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L-~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAV-NCQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh-CCCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 46799999999999998876554 48899999999999999999877 2211111011111 111222223333332211
Q ss_pred CCCCccc---cccChHHHHHHHHHH----hcCCcEEEEEeCCCCcc--cccccccCCCCCCCCcEEEEec-CChhHHhh-
Q 038882 235 DLFSESW---KNKSLVEKSCAIFKI----LSNKKFVLLLDDVWEPV--DLTKVGVPIPNSTNASKVLFTT-RYKEVCGK- 303 (347)
Q Consensus 235 ~~~~~~~---~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTt-R~~~v~~~- 303 (347)
...-... .....++....+... ..+++-++|+|+++... ..+.++..+......+.+|++| +...+...
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI 174 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATI 174 (620)
T ss_pred CCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHH
Confidence 1100000 111223333222222 23456689999997652 3555555554444455555544 43333322
Q ss_pred cCCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 304 MEAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 304 ~~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
......+++.+++.++....+.+.+ .++.+..|+..++|.+
T Consensus 175 ~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdl 222 (620)
T PRK14954 175 ASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSM 222 (620)
T ss_pred HhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCH
Confidence 2233578999999999888877643 3567888888888853
No 68
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=1.2e-06 Score=85.63 Aligned_cols=179 Identities=9% Similarity=0.073 Sum_probs=104.1
Q ss_pred CcccchhhhHHHHHHHhhccCceE-EEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGI-IGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~v-i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
..++|.+..++.|.+++..+.... +.++|+.|+||||+|+.++... .-....+ + ..++.-...+.|...-+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l-~c~~~~~---~----~pCg~C~~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSL-NCAQGPT---A----TPCGVCESCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-ccccCCC---C----CcccccHHHHHhhcccC
Confidence 468999999999999998876554 6899999999999999999876 2111110 0 11111122222221100
Q ss_pred CCC-----ccccccChHHHHHHHHHHh-----cCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecC-ChhHHh
Q 038882 236 LFS-----ESWKNKSLVEKSCAIFKIL-----SNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTR-YKEVCG 302 (347)
Q Consensus 236 ~~~-----~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR-~~~v~~ 302 (347)
... +.......++.. .+.+.+ .+++-++|+|++... ...+.++..+......+.+|++|. ...+..
T Consensus 85 ~~~dvieidaas~~gvd~iR-el~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~ 163 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDTR-ELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLP 163 (584)
T ss_pred CCceEEEeccccccCHHHHH-HHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHH
Confidence 000 000011122221 122211 346669999999765 345555555554455666665554 344332
Q ss_pred hc-CCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 303 KM-EAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 303 ~~-~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
.+ .....|++.+++.++..+.+.+.+ .++.+..|++.++|.+
T Consensus 164 TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~Gdl 213 (584)
T PRK14952 164 TIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSP 213 (584)
T ss_pred HHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 22 223578999999999888887643 2456677888888864
No 69
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.55 E-value=4.6e-07 Score=78.94 Aligned_cols=153 Identities=10% Similarity=0.092 Sum_probs=86.1
Q ss_pred ccchhhhH-HHHHHHhhc-cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCC
Q 038882 159 IIGQESIF-DDVWRCIIE-EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDL 236 (347)
Q Consensus 159 ~vGR~~~~-~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 236 (347)
+.|..... ..+.++... .....+.|+|.+|+|||+||+.+++.. .. .. ....+++..... .. +
T Consensus 21 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~-~~-~~-~~~~~i~~~~~~------~~----~-- 85 (227)
T PRK08903 21 VAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADA-SY-GG-RNARYLDAASPL------LA----F-- 85 (227)
T ss_pred ccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHH-Hh-CC-CcEEEEehHHhH------HH----H--
Confidence 34554443 333333331 345688999999999999999999875 21 11 233444432210 00 0
Q ss_pred CCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCccccc--ccccCCCC-CCCCc-EEEEecCChhHH--------hhc
Q 038882 237 FSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPVDLT--KVGVPIPN-STNAS-KVLFTTRYKEVC--------GKM 304 (347)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~--~l~~~l~~-~~~gs-~iiiTtR~~~v~--------~~~ 304 (347)
... ...-+||+||++....+. .+...+.. ...+. .+|+|++..... +.+
T Consensus 86 ------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~ 146 (227)
T PRK08903 86 ------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRL 146 (227)
T ss_pred ------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHH
Confidence 011 234478999996543221 22222211 12333 466666643321 122
Q ss_pred CCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCccc
Q 038882 305 EAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHTF 345 (347)
Q Consensus 305 ~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~PL 345 (347)
.....+.++++++++-..++.+.+ .++....+++.+.|+|.
T Consensus 147 ~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~ 194 (227)
T PRK08903 147 GWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMP 194 (227)
T ss_pred hcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHH
Confidence 233588999999988777776632 35678888888888875
No 70
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.52 E-value=1.3e-06 Score=89.53 Aligned_cols=169 Identities=11% Similarity=0.148 Sum_probs=97.9
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCC----CCCEEEE-EEecCCCChHHHHHHHH
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERH----DFDIVIW-VVVSKDLNLEKVQEDIG 231 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----~f~~~~w-v~vs~~~~~~~~~~~i~ 231 (347)
..++||+++++.+++.|......-+.++|++|+|||++|+.++... .... -.+..+| +..+. + .
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i-~~~~v~~~l~~~~i~~l~l~~------l----~ 255 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRI-AAGDVPPALRNVRLLSLDLGL------L----Q 255 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHH-hhCCCCccccCCeEEEeehhh------h----h
Confidence 4689999999999999988766777899999999999999999876 2111 1122332 22211 0 0
Q ss_pred HhcCCCCccccccChHHHHHHHHHHh--cCCcEEEEEeCCCCcc-------ccc--ccccCCCCCCCC-cEEEEecCChh
Q 038882 232 KKIDLFSESWKNKSLVEKSCAIFKIL--SNKKFVLLLDDVWEPV-------DLT--KVGVPIPNSTNA-SKVLFTTRYKE 299 (347)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~-------~~~--~l~~~l~~~~~g-s~iiiTtR~~~ 299 (347)
. + ... .....+....+.+.+ .+++.+|++|++.... ..+ .++.+. ...| -++|-||...+
T Consensus 256 a--g---~~~-~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~--l~~G~l~~IgaTT~~e 327 (852)
T TIGR03345 256 A--G---ASV-KGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPA--LARGELRTIAATTWAE 327 (852)
T ss_pred c--c---ccc-chHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHH--hhCCCeEEEEecCHHH
Confidence 0 0 000 011112222222222 2468999999996541 111 122222 2233 45666665533
Q ss_pred HHhh-------cCCCceeecCCCCHHHHHHHHhhhh-----------ChhhHHHHHHHhCCcc
Q 038882 300 VCGK-------MEAHKKLRVECLTADEAWMLFNVKV-----------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 300 v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~~-----------~~~~~~~I~~~~~G~P 344 (347)
.... ......+.+++++.++..+++.... .++.+..++..+.+.+
T Consensus 328 ~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 328 YKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred HhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 2111 1123588999999999999965322 2556777777776543
No 71
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.51 E-value=6.5e-07 Score=77.36 Aligned_cols=168 Identities=14% Similarity=0.187 Sum_probs=94.9
Q ss_pred Ccccchhhh-HHHHHHHhhcc---CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHH
Q 038882 157 PRIIGQESI-FDDVWRCIIEE---QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGK 232 (347)
Q Consensus 157 ~~~vGR~~~-~~~l~~~L~~~---~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 232 (347)
..++|-..+ .-.....+.++ ....+.|+|..|+|||.|.+.+++.. .....-..++|++ ..++...+..
T Consensus 9 nfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~-~~~~~~~~v~y~~------~~~f~~~~~~ 81 (219)
T PF00308_consen 9 NFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEA-QKQHPGKRVVYLS------AEEFIREFAD 81 (219)
T ss_dssp CS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHH-HHHCTTS-EEEEE------HHHHHHHHHH
T ss_pred cCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHH-Hhccccccceeec------HHHHHHHHHH
Confidence 344675333 33333334332 23568999999999999999999987 3222222455653 4455555555
Q ss_pred hcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCcc---ccccc-ccCCC-CCCCCcEEEEecCCh---------
Q 038882 233 KIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPV---DLTKV-GVPIP-NSTNASKVLFTTRYK--------- 298 (347)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---~~~~l-~~~l~-~~~~gs~iiiTtR~~--------- 298 (347)
.+.. .. ...+.+.++ .-=+|+|||++... .|... ...+. ....|.++|+|+...
T Consensus 82 ~~~~-------~~----~~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~ 149 (219)
T PF00308_consen 82 ALRD-------GE----IEEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLP 149 (219)
T ss_dssp HHHT-------TS----HHHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-H
T ss_pred HHHc-------cc----chhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccCh
Confidence 4432 11 123444444 34578899996642 22222 11111 113466899999643
Q ss_pred hHHhhcCCCceeecCCCCHHHHHHHHhhhhC-------hhhHHHHHHHhCCc
Q 038882 299 EVCGKMEAHKKLRVECLTADEAWMLFNVKVG-------EDTIDKIFVKCCCH 343 (347)
Q Consensus 299 ~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~-------~~~~~~I~~~~~G~ 343 (347)
.+.+.+...-.+++++++.++-.+++.+.+. ++.++-|++.+.+.
T Consensus 150 ~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~ 201 (219)
T PF00308_consen 150 DLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRD 201 (219)
T ss_dssp HHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSS
T ss_pred hhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCC
Confidence 2344555666899999999999999998763 56666677666543
No 72
>PF14516 AAA_35: AAA-like domain
Probab=98.49 E-value=1.2e-05 Score=74.04 Aligned_cols=186 Identities=14% Similarity=0.235 Sum_probs=109.7
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCC-----CChHHHHH---
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKD-----LNLEKVQE--- 228 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-----~~~~~~~~--- 228 (347)
+..|.|...-+.+.+.+.++ ...+.|.|+-.+|||+|...+.+.. .. ..+ .++++++... .+....++
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l-~~-~~~-~~v~id~~~~~~~~~~~~~~f~~~~~ 86 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERL-QQ-QGY-RCVYIDLQQLGSAIFSDLEQFLRWFC 86 (331)
T ss_pred CcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHH-HH-CCC-EEEEEEeecCCCcccCCHHHHHHHHH
Confidence 56689986677777777664 4689999999999999999998877 32 233 4457766542 24554444
Q ss_pred -HHHHhcCCCCcc---cc--ccChHHHHHHHHHHh-c--CCcEEEEEeCCCCcccc----cccccCC----CC---C-CC
Q 038882 229 -DIGKKIDLFSES---WK--NKSLVEKSCAIFKIL-S--NKKFVLLLDDVWEPVDL----TKVGVPI----PN---S-TN 287 (347)
Q Consensus 229 -~i~~~l~~~~~~---~~--~~~~~~~~~~l~~~l-~--~kr~LlVlDdv~~~~~~----~~l~~~l----~~---~-~~ 287 (347)
.|..+++....- +. ..+.......+.+++ . +++.+|+||+++..... .++...+ .. . ..
T Consensus 87 ~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~ 166 (331)
T PF14516_consen 87 EEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIW 166 (331)
T ss_pred HHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCccc
Confidence 445555543211 00 112233334444433 2 58999999999764221 1111111 00 0 01
Q ss_pred C-cEEEEecCCh-hHHh-----hcCCCceeecCCCCHHHHHHHHhhhh---ChhhHHHHHHHhCCcccC
Q 038882 288 A-SKVLFTTRYK-EVCG-----KMEAHKKLRVECLTADEAWMLFNVKV---GEDTIDKIFVKCCCHTFV 346 (347)
Q Consensus 288 g-s~iiiTtR~~-~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~---~~~~~~~I~~~~~G~PLA 346 (347)
. -++++....+ .... ..+....+.|++++.+|...|+.+.- +.+.+++|...+||+|.-
T Consensus 167 ~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~~~~~~~l~~~tgGhP~L 235 (331)
T PF14516_consen 167 QKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFSQEQLEQLMDWTGGHPYL 235 (331)
T ss_pred ceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCCHHHHHHHHHHHCCCHHH
Confidence 1 1222221111 1111 11223478999999999999998763 466799999999999963
No 73
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.48 E-value=1.7e-06 Score=82.66 Aligned_cols=171 Identities=16% Similarity=0.157 Sum_probs=101.0
Q ss_pred Ccccchhhh--HHHHHHHhhcc--CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHH
Q 038882 157 PRIIGQESI--FDDVWRCIIEE--QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGK 232 (347)
Q Consensus 157 ~~~vGR~~~--~~~l~~~L~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 232 (347)
..++|.... ......+...+ ....+.|+|..|+|||+|++.+++.. .....-..+++++ ..++...+..
T Consensus 116 nFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l-~~~~~~~~v~yv~------~~~f~~~~~~ 188 (450)
T PRK14087 116 NFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYI-ESNFSDLKVSYMS------GDEFARKAVD 188 (450)
T ss_pred cccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHH-HHhCCCCeEEEEE------HHHHHHHHHH
Confidence 345676443 22222332222 23568999999999999999999866 2222223444543 3456666666
Q ss_pred hcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCcc---cc-cccccCCCC-CCCCcEEEEecCCh---------
Q 038882 233 KIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPV---DL-TKVGVPIPN-STNASKVLFTTRYK--------- 298 (347)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~iiiTtR~~--------- 298 (347)
.+... ......+.+.++ ..-+|||||+.... .+ +.+...+.. ...|..||+|+...
T Consensus 189 ~l~~~---------~~~~~~~~~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~ 258 (450)
T PRK14087 189 ILQKT---------HKEIEQFKNEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDN 258 (450)
T ss_pred HHHHh---------hhHHHHHHHHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccH
Confidence 55320 011233444444 34488899996542 12 222222211 13345688887643
Q ss_pred hHHhhcCCCceeecCCCCHHHHHHHHhhhh---------ChhhHHHHHHHhCCcc
Q 038882 299 EVCGKMEAHKKLRVECLTADEAWMLFNVKV---------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 299 ~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~---------~~~~~~~I~~~~~G~P 344 (347)
.+...+...-.+.+++++.++-.+++.+.+ .++.+.-|+..+.|.|
T Consensus 259 rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~ 313 (450)
T PRK14087 259 RLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDV 313 (450)
T ss_pred HHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCH
Confidence 233444455678999999999999998765 2566777888888876
No 74
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.47 E-value=9.3e-07 Score=78.68 Aligned_cols=150 Identities=16% Similarity=0.162 Sum_probs=77.5
Q ss_pred cccchhhhHHHHHH---Hhhc------------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCC
Q 038882 158 RIIGQESIFDDVWR---CIIE------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLN 222 (347)
Q Consensus 158 ~~vGR~~~~~~l~~---~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 222 (347)
.++|.++..+.|.+ +... +....+.++|++|+||||+|+.+++.. ..........++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l-~~~~~~~~~~~v~~~~--- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLF-KEMNVLSKGHLIEVER--- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHH-HhcCcccCCceEEecH---
Confidence 46887766555543 3211 134567899999999999999998865 2111111112233222
Q ss_pred hHHHHHHHHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCcc----------cccccccCCCCCCCCcEEE
Q 038882 223 LEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPV----------DLTKVGVPIPNSTNASKVL 292 (347)
Q Consensus 223 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~l~~~l~~~~~gs~ii 292 (347)
.++. ...- ..........+ +.. ...+|++|+++... ....+...+........+|
T Consensus 83 -~~l~----~~~~-------g~~~~~~~~~~-~~a--~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vi 147 (261)
T TIGR02881 83 -ADLV----GEYI-------GHTAQKTREVI-KKA--LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLI 147 (261)
T ss_pred -HHhh----hhhc-------cchHHHHHHHH-Hhc--cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEE
Confidence 1111 1110 01111111112 111 23589999997531 1222333333333334556
Q ss_pred EecCChhH----------HhhcCCCceeecCCCCHHHHHHHHhhhh
Q 038882 293 FTTRYKEV----------CGKMEAHKKLRVECLTADEAWMLFNVKV 328 (347)
Q Consensus 293 iTtR~~~v----------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 328 (347)
+++..... ...+ ...+.+++++.++-.+++.+.+
T Consensus 148 la~~~~~~~~~~~~~p~L~sRf--~~~i~f~~~~~~el~~Il~~~~ 191 (261)
T TIGR02881 148 LAGYSDEMDYFLSLNPGLRSRF--PISIDFPDYTVEELMEIAERMV 191 (261)
T ss_pred ecCCcchhHHHHhcChHHHhcc--ceEEEECCCCHHHHHHHHHHHH
Confidence 66544322 1111 2468999999999999998765
No 75
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.46 E-value=3.1e-06 Score=75.17 Aligned_cols=182 Identities=13% Similarity=0.121 Sum_probs=111.6
Q ss_pred Ccccchh---hhHHHHHHHhhcc---CceEEEEEeCCCCchHHHHHHHHHhhhccCCC----CCEEEEEEecCCCChHHH
Q 038882 157 PRIIGQE---SIFDDVWRCIIEE---QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHD----FDIVIWVVVSKDLNLEKV 226 (347)
Q Consensus 157 ~~~vGR~---~~~~~l~~~L~~~---~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~----f~~~~wv~vs~~~~~~~~ 226 (347)
+.++|-. ..++.|.++|..+ ..+-+.|+|.+|.|||++++.+...+. .... --.++.|.....++...+
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp-~~~d~~~~~~PVv~vq~P~~p~~~~~ 112 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHP-PQSDEDAERIPVVYVQMPPEPDERRF 112 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCC-CCCCCCCccccEEEEecCCCCChHHH
Confidence 4556643 3455555555543 457899999999999999999998762 2111 125778888899999999
Q ss_pred HHHHHHhcCCCCccccccChHHHHHHHHHHhcC-CcEEEEEeCCCCc-----c---cccccccCCCCCCCCcEEEEecCC
Q 038882 227 QEDIGKKIDLFSESWKNKSLVEKSCAIFKILSN-KKFVLLLDDVWEP-----V---DLTKVGVPIPNSTNASKVLFTTRY 297 (347)
Q Consensus 227 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~-----~---~~~~l~~~l~~~~~gs~iiiTtR~ 297 (347)
...|+.+++.+... ..+...+.......++. +-=+||+|++.+. . ..-.....+.+.-.=+-|.+-|+.
T Consensus 113 Y~~IL~~lgaP~~~--~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 113 YSAILEALGAPYRP--RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHHhCcccCC--CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 99999999976433 33444555555566654 5669999999764 1 111112223323333445555543
Q ss_pred hh--------HHhhcCCCceeecCCCCHH-HHHHHHhhhh------------ChhhHHHHHHHhCCcc
Q 038882 298 KE--------VCGKMEAHKKLRVECLTAD-EAWMLFNVKV------------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 298 ~~--------v~~~~~~~~~~~l~~L~~~-ea~~Lf~~~~------------~~~~~~~I~~~~~G~P 344 (347)
-. .+..+ ..+.|+.-+.+ +...|+...- ..+.+..|+..++|+.
T Consensus 191 A~~al~~D~QLa~RF---~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i 255 (302)
T PF05621_consen 191 AYRALRTDPQLASRF---EPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI 255 (302)
T ss_pred HHHHhccCHHHHhcc---CCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch
Confidence 32 22222 35566555543 4444443321 1466788999999864
No 76
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.46 E-value=3.6e-06 Score=79.14 Aligned_cols=163 Identities=13% Similarity=0.208 Sum_probs=95.5
Q ss_pred CcccchhhhHHHHHHHhhc-------------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCCh
Q 038882 157 PRIIGQESIFDDVWRCIIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNL 223 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 223 (347)
+.+.|+++.+++|.+.+.. ...+-|.++|++|+|||++|+.+++.. ... |+.++.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~-----~i~v~~---- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NAT-----FIRVVG---- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCC-----EEEeeh----
Confidence 4678999999998887632 234568999999999999999999876 222 222211
Q ss_pred HHHHHHHHHhcCCCCccccccChHHHHHHHHHHh-cCCcEEEEEeCCCCcc------------c----ccccccCCC--C
Q 038882 224 EKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKIL-SNKKFVLLLDDVWEPV------------D----LTKVGVPIP--N 284 (347)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~------------~----~~~l~~~l~--~ 284 (347)
.++ ..... ... ......+.+.. ...+.+|+|||++... . +..+...+. .
T Consensus 199 ~~l----~~~~~-------g~~-~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 SEL----VQKFI-------GEG-ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred HHH----hHhhc-------cch-HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 111 11110 011 11222222322 3467899999997531 0 111111111 1
Q ss_pred CCCCcEEEEecCChhHHhh--cC---CCceeecCCCCHHHHHHHHhhhhC------hhhHHHHHHHhCCc
Q 038882 285 STNASKVLFTTRYKEVCGK--ME---AHKKLRVECLTADEAWMLFNVKVG------EDTIDKIFVKCCCH 343 (347)
Q Consensus 285 ~~~gs~iiiTtR~~~v~~~--~~---~~~~~~l~~L~~~ea~~Lf~~~~~------~~~~~~I~~~~~G~ 343 (347)
...+..||.||........ +. ....+.+++.+.++-.++|+..+. .-....+++.+.|.
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~ 336 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGA 336 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCC
Confidence 2235677878876543211 11 234789999999999999987653 23466677777664
No 77
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.45 E-value=4.3e-06 Score=75.62 Aligned_cols=166 Identities=17% Similarity=0.224 Sum_probs=106.0
Q ss_pred CCcccchhhhHHHHHHHhhccCc---eEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHH
Q 038882 156 EPRIIGQESIFDDVWRCIIEEQV---GIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGK 232 (347)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~~~~---~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 232 (347)
.+.|.+|+.++..+..++.+... ..|.|+|-.|.|||.+.+++.+.. .. ..+|+++-+.++...++..|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~---n~---~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL---NL---ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc---CC---cceeeehHHhccHHHHHHHHHH
Confidence 46789999999999999988643 345789999999999999998865 22 3489999999999999999999
Q ss_pred hcCCCCccccc-----cChHHHHHHHHHH--hc--CCcEEEEEeCCCCcccccccccC----CC--CCCCCcEEEEecCC
Q 038882 233 KIDLFSESWKN-----KSLVEKSCAIFKI--LS--NKKFVLLLDDVWEPVDLTKVGVP----IP--NSTNASKVLFTTRY 297 (347)
Q Consensus 233 ~l~~~~~~~~~-----~~~~~~~~~l~~~--l~--~kr~LlVlDdv~~~~~~~~l~~~----l~--~~~~gs~iiiTtR~ 297 (347)
+.+..+..... .+.......+.++ .. ++.++||||+++...+.+.+.-+ +. -..+.. +|+++-.
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i-~iils~~ 157 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTI-VIILSAP 157 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCce-EEEEecc
Confidence 98522211111 1112222223331 11 35899999999877655543111 00 011223 3333332
Q ss_pred hh---HHhhcCCCc--eeecCCCCHHHHHHHHhhhh
Q 038882 298 KE---VCGKMEAHK--KLRVECLTADEAWMLFNVKV 328 (347)
Q Consensus 298 ~~---v~~~~~~~~--~~~l~~L~~~ea~~Lf~~~~ 328 (347)
.. ....++... ++..+.-+.++...++.+.-
T Consensus 158 ~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 158 SCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred ccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 21 122234433 45778888899888887643
No 78
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.45 E-value=6.7e-07 Score=82.56 Aligned_cols=93 Identities=13% Similarity=0.118 Sum_probs=62.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCC--CChHHHHHHHHHhcCCCCccccccCh----HHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKD--LNLEKVQEDIGKKIDLFSESWKNKSL----VEKS 250 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~~----~~~~ 250 (347)
....++|+|++|+|||||++.+++.+ .. .+|+..+|+.+... .++.++++.+...+-...-..+.... ....
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I-~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAI-TR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhh-cc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 56789999999999999999999987 33 37999999998865 78999999995443221111011111 1111
Q ss_pred HHHHHH-hcCCcEEEEEeCCCC
Q 038882 251 CAIFKI-LSNKKFVLLLDDVWE 271 (347)
Q Consensus 251 ~~l~~~-l~~kr~LlVlDdv~~ 271 (347)
+..... -.+++.+|++|++..
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhH
Confidence 112222 257999999999853
No 79
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.45 E-value=2.4e-06 Score=86.88 Aligned_cols=154 Identities=16% Similarity=0.262 Sum_probs=88.7
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccC--CCC-CEEEEEEecCCCChHHHHHHHHHh
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHER--HDF-DIVIWVVVSKDLNLEKVQEDIGKK 233 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~~f-~~~~wv~vs~~~~~~~~~~~i~~~ 233 (347)
+.++||+++++.+++.|......-+.++|++|+|||++|+.++....... ..+ +..+|. + +... +...
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~----l~a~ 252 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGS----LLAG 252 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHH----Hhhh
Confidence 46899999999999999887667778999999999999999998762111 111 333442 1 1111 1111
Q ss_pred cCCCCccccccChHHHHHHHHHHh-cCCcEEEEEeCCCCcc----------cccccccCCCCCCCC-cEEEEecCChhHH
Q 038882 234 IDLFSESWKNKSLVEKSCAIFKIL-SNKKFVLLLDDVWEPV----------DLTKVGVPIPNSTNA-SKVLFTTRYKEVC 301 (347)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~----------~~~~l~~~l~~~~~g-s~iiiTtR~~~v~ 301 (347)
... ....++....+.+.+ +.++.+|++|+++... +...++.+.. ..| -++|-+|...+..
T Consensus 253 ~~~------~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l--~~g~i~~IgaTt~~e~~ 324 (731)
T TIGR02639 253 TKY------RGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL--SSGKLRCIGSTTYEEYK 324 (731)
T ss_pred ccc------cchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH--hCCCeEEEEecCHHHHH
Confidence 000 011223333333333 3468999999996431 1122222221 223 3455555432221
Q ss_pred h-------hcCCCceeecCCCCHHHHHHHHhhh
Q 038882 302 G-------KMEAHKKLRVECLTADEAWMLFNVK 327 (347)
Q Consensus 302 ~-------~~~~~~~~~l~~L~~~ea~~Lf~~~ 327 (347)
. .......+.++.++.++..+++...
T Consensus 325 ~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~ 357 (731)
T TIGR02639 325 NHFEKDRALSRRFQKIDVGEPSIEETVKILKGL 357 (731)
T ss_pred HHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHH
Confidence 1 1112247899999999999999853
No 80
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=2.7e-06 Score=83.22 Aligned_cols=179 Identities=11% Similarity=0.114 Sum_probs=104.0
Q ss_pred CcccchhhhHHHHHHHhhccC-ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQ-VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
.+++|-+..+..|.+++..+. ...+.++|+.|+||||+|+.+++.. -...... ...++.-...+.|.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L-~C~~~~~-------~~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKAL-NCETAPT-------GEPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhc-cccCCCC-------CCCCcccHHHHHHhcCCC
Confidence 467999988888988888765 4678889999999999999999876 2111110 011222223333332211
Q ss_pred CCCccc---cccChHHHHHHHHHHh-----cCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCC-hhHHhhc
Q 038882 236 LFSESW---KNKSLVEKSCAIFKIL-----SNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRY-KEVCGKM 304 (347)
Q Consensus 236 ~~~~~~---~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~-~~v~~~~ 304 (347)
..-... .....++. ..+.+.+ .+++-++|+|+++.. ..+..++..+........+|++|.+ ..+...+
T Consensus 88 pDv~eId~a~~~~Id~i-R~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI 166 (624)
T PRK14959 88 VDVVEIDGASNRGIDDA-KRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTI 166 (624)
T ss_pred CceEEEecccccCHHHH-HHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHH
Confidence 100000 01112221 1222222 356679999999765 3345555544333345556665554 3333222
Q ss_pred -CCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 305 -EAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 305 -~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
.....+++.+++.++....+.+.+ .++.+..|++.++|.+
T Consensus 167 ~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~Gdl 214 (624)
T PRK14959 167 VSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSV 214 (624)
T ss_pred HhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 122478999999999998887643 3566778888888753
No 81
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=1.5e-06 Score=85.91 Aligned_cols=181 Identities=12% Similarity=0.131 Sum_probs=107.3
Q ss_pred CcccchhhhHHHHHHHhhccCc-eEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
..++|.+..++.|.+++..+.. ..+.++|+.|+||||+|+.++... ....... ....++....++.+....+
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l-~c~~~~~------~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAV-NCTTNDP------KGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh-cCCCCCC------CCCCCccCHHHHHHhcCCC
Confidence 4689999999999998887654 456899999999999999999876 2111100 0112223344555544332
Q ss_pred CCC---ccccccChHHHHHHHHHHh-----cCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCCh-hHHhhc
Q 038882 236 LFS---ESWKNKSLVEKSCAIFKIL-----SNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRYK-EVCGKM 304 (347)
Q Consensus 236 ~~~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~-~v~~~~ 304 (347)
..- +.......++. ..+.+.+ .+++-++|+|+++.. ...+.++..+......+.+|++|.+. .+...+
T Consensus 89 ~d~~~i~~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI 167 (585)
T PRK14950 89 VDVIEMDAASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI 167 (585)
T ss_pred CeEEEEeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHH
Confidence 110 00011122222 2222222 245679999999654 33555544444444456666665433 332221
Q ss_pred -CCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCccc
Q 038882 305 -EAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHTF 345 (347)
Q Consensus 305 -~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~PL 345 (347)
.....+.+.+++.++....+.+.+ .++.+..|++.++|.+-
T Consensus 168 ~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr 216 (585)
T PRK14950 168 LSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMR 216 (585)
T ss_pred HhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 122467899999999888887654 25667888999988763
No 82
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=4.8e-06 Score=82.43 Aligned_cols=181 Identities=12% Similarity=0.112 Sum_probs=102.0
Q ss_pred CcccchhhhHHHHHHHhhccCce-EEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVG-IIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
..++|.+...+.|.+++..+... .+.++|+.|+||||+|+.+.... ....... -...++....++.+-..-.
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l-~c~~~~~------~~~~Cg~C~sC~~~~~~~~ 89 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTI-NCQNLTA------DGEACNECESCVAFNEQRS 89 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh-CCCCCCC------CCCCCCcchHHHHHhcCCC
Confidence 46799999999999999887654 57899999999999999988865 1110000 0000000011111111000
Q ss_pred CCC---ccccccChHHHHHHHHHH----hcCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEec-CChhHHhhcC
Q 038882 236 LFS---ESWKNKSLVEKSCAIFKI----LSNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTT-RYKEVCGKME 305 (347)
Q Consensus 236 ~~~---~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTt-R~~~v~~~~~ 305 (347)
..- +.......++....+.+. ..+++-++|+|+++.. ..++.++..+.....++.+|++| ....+...+.
T Consensus 90 ~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~ 169 (614)
T PRK14971 90 YNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTIL 169 (614)
T ss_pred CceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHH
Confidence 000 000011112222222111 1235568899998765 34555655555444566666555 4444433222
Q ss_pred -CCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 306 -AHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 306 -~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
....+++.+++.++....+.+.+ .++.+..|+..++|..
T Consensus 170 SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdl 216 (614)
T PRK14971 170 SRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGM 216 (614)
T ss_pred hhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 23578999999999998887644 2456788888888853
No 83
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.42 E-value=1.6e-06 Score=76.13 Aligned_cols=173 Identities=13% Similarity=0.187 Sum_probs=109.7
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEE-EEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIW-VVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~w-v~vs~~~~~~~~~~~i~~~l~ 235 (347)
..++|.+..+.-|.+.+.....+....+|++|.|||+-|+.++... -..+.|.+.+- .++|..-... +.++
T Consensus 36 de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSderGis-vvr~------ 107 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDERGIS-VVRE------ 107 (346)
T ss_pred HhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhccccccccc-chhh------
Confidence 5679999999999999988788999999999999999999999887 44455655432 3333322111 0000
Q ss_pred CCCccccccChHHHHHHHHHHh--cCCc-EEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCChh-HHhhcCC-Cc
Q 038882 236 LFSESWKNKSLVEKSCAIFKIL--SNKK-FVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRYKE-VCGKMEA-HK 308 (347)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l--~~kr-~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~~-v~~~~~~-~~ 308 (347)
...+...+........ ..++ -++|||++++. +.|..+.....+....++.|+.+..-. +...+.. ..
T Consensus 108 ------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~ 181 (346)
T KOG0989|consen 108 ------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQ 181 (346)
T ss_pred ------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHH
Confidence 0011111111110000 0123 58899999876 668888666655556677666554433 2222211 23
Q ss_pred eeecCCCCHHHHHHHHhhhhC-------hhhHHHHHHHhCCc
Q 038882 309 KLRVECLTADEAWMLFNVKVG-------EDTIDKIFVKCCCH 343 (347)
Q Consensus 309 ~~~l~~L~~~ea~~Lf~~~~~-------~~~~~~I~~~~~G~ 343 (347)
-|..++|.+++...-++..+. ++..+.|++.++|-
T Consensus 182 KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 182 KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGD 223 (346)
T ss_pred HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCc
Confidence 678899999998888877663 56788899999883
No 84
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.38 E-value=3.7e-06 Score=77.02 Aligned_cols=144 Identities=14% Similarity=0.153 Sum_probs=82.9
Q ss_pred CcccchhhhHHHHHHHhhccCc-eEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
..++|.++..+.+..++..+.. .++.++|++|+|||++|+.+++.. ... ...++.+. .... ..+..+..+.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~~---~~~i~~~~-~~~~-~i~~~l~~~~ 92 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV---GAE---VLFVNGSD-CRID-FVRNRLTRFA 92 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---Ccc---ceEeccCc-ccHH-HHHHHHHHHH
Confidence 5679999999999999887654 566679999999999999998865 221 23333333 1111 1111111110
Q ss_pred CCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCc--cc-ccccccCCCCCCCCcEEEEecCChhH-Hhhc-CCCcee
Q 038882 236 LFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEP--VD-LTKVGVPIPNSTNASKVLFTTRYKEV-CGKM-EAHKKL 310 (347)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~-~~~l~~~l~~~~~gs~iiiTtR~~~v-~~~~-~~~~~~ 310 (347)
. . . -+.+.+-+||+||++.. .. ...+...+.....++++|+||..... ...+ .....+
T Consensus 93 ~---------------~-~-~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i 155 (316)
T PHA02544 93 S---------------T-V-SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVI 155 (316)
T ss_pred H---------------h-h-cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEE
Confidence 0 0 0 01234568999999754 11 12222223333467788888875431 1111 122367
Q ss_pred ecCCCCHHHHHHHHh
Q 038882 311 RVECLTADEAWMLFN 325 (347)
Q Consensus 311 ~l~~L~~~ea~~Lf~ 325 (347)
.++..+.++..+++.
T Consensus 156 ~~~~p~~~~~~~il~ 170 (316)
T PHA02544 156 DFGVPTKEEQIEMMK 170 (316)
T ss_pred EeCCCCHHHHHHHHH
Confidence 777778887765554
No 85
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=7.3e-06 Score=79.20 Aligned_cols=180 Identities=10% Similarity=0.080 Sum_probs=103.6
Q ss_pred CcccchhhhHHHHHHHhhccCce-EEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVG-IIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
..++|-+...+.|...+..+... .+.++|+.|+||||+|+.+.+.. -.....+. ..+........+.....
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L-~c~~~~~~-------~pC~~C~~C~~~~~~~h 85 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARAL-VCEQGPSS-------TPCDTCIQCQSALENRH 85 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHh-cCCCCCCC-------CCCcccHHHHHHhhcCC
Confidence 46799999999999999887655 56899999999999999998775 11111000 00111111111111111
Q ss_pred CCC---ccccccChHHHHHHHHHH----hcCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCChh-HHhhc-
Q 038882 236 LFS---ESWKNKSLVEKSCAIFKI----LSNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRYKE-VCGKM- 304 (347)
Q Consensus 236 ~~~---~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~~-v~~~~- 304 (347)
..- +.......++....+... ..+++-++|+|+++.. ...+.++..+-.....+++|++|.+.. +...+
T Consensus 86 ~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~ 165 (535)
T PRK08451 86 IDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATIL 165 (535)
T ss_pred CeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHH
Confidence 000 000011122222222211 1145668999999765 334455444444445677777776532 21111
Q ss_pred CCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 305 EAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 305 ~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
.....+++.+++.++....+.+.+ .++.+..|++.++|.+
T Consensus 166 SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~Gdl 212 (535)
T PRK08451 166 SRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSL 212 (535)
T ss_pred hhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcH
Confidence 123578999999999998887654 2467788888888865
No 86
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.36 E-value=6.4e-06 Score=78.14 Aligned_cols=147 Identities=17% Similarity=0.219 Sum_probs=86.6
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHHh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKIL 257 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 257 (347)
...+.|+|++|+|||+|++.+++.. .....-..++|++. .++...+...+.. ... ..+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l-~~~~~~~~v~yi~~------~~~~~~~~~~~~~-------~~~----~~~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEI-LENNPNAKVVYVSS------EKFTNDFVNALRN-------NKM----EEFKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCCcEEEEEH------HHHHHHHHHHHHc-------CCH----HHHHHHH
Confidence 3578999999999999999999987 32221234556543 3444455544432 111 2233333
Q ss_pred cCCcEEEEEeCCCCccc---c-cccccCCCC-CCCCcEEEEecCChh---------HHhhcCCCceeecCCCCHHHHHHH
Q 038882 258 SNKKFVLLLDDVWEPVD---L-TKVGVPIPN-STNASKVLFTTRYKE---------VCGKMEAHKKLRVECLTADEAWML 323 (347)
Q Consensus 258 ~~kr~LlVlDdv~~~~~---~-~~l~~~l~~-~~~gs~iiiTtR~~~---------v~~~~~~~~~~~l~~L~~~ea~~L 323 (347)
++ .-+|+|||++.... + +.+...+.. ...+..+|+||.... +.+.+.....+.+++.+.++-..+
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 33 34889999975321 1 112211111 123456888876421 223333344789999999999999
Q ss_pred HhhhhC-------hhhHHHHHHHhCCc
Q 038882 324 FNVKVG-------EDTIDKIFVKCCCH 343 (347)
Q Consensus 324 f~~~~~-------~~~~~~I~~~~~G~ 343 (347)
+.+.+. ++.+..|++.+.|.
T Consensus 277 l~~~~~~~~~~l~~e~l~~ia~~~~~~ 303 (405)
T TIGR00362 277 LQKKAEEEGLELPDEVLEFIAKNIRSN 303 (405)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhcCCC
Confidence 988762 55667777776654
No 87
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.36 E-value=1e-05 Score=77.35 Aligned_cols=179 Identities=13% Similarity=0.163 Sum_probs=100.2
Q ss_pred CcccchhhhHHHHHHHhhccCc-eEEEEEeCCCCchHHHHHHHHHhhhccCCCC-CEEEEEEecCCCChHHHHHHHHHhc
Q 038882 157 PRIIGQESIFDDVWRCIIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCHERHDF-DIVIWVVVSKDLNLEKVQEDIGKKI 234 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f-~~~~wv~vs~~~~~~~~~~~i~~~l 234 (347)
..++|.+..+..|.+++..+.. ..+.++|++|+||||+|+.+.+.. ...... +.. .+......+.+...-
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l-~c~~~~~~~~-------~c~~c~~C~~i~~~~ 88 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKAL-NCQNPTEDQE-------PCNQCASCKEISSGT 88 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHh-cCCCcccCCC-------CCcccHHHHHHhcCC
Confidence 5689999999999999987655 567899999999999999998876 211100 000 000000111111000
Q ss_pred CCCC---ccccccChHHHHHHHHHHh-----cCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCC-hhHHhh
Q 038882 235 DLFS---ESWKNKSLVEKSCAIFKIL-----SNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRY-KEVCGK 303 (347)
Q Consensus 235 ~~~~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~-~~v~~~ 303 (347)
...- +.......++.. .+.+.+ .+++-++|+|+++.. ...+.+...+......+.+|++|.+ ..+...
T Consensus 89 ~~d~~~i~g~~~~gid~ir-~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~t 167 (451)
T PRK06305 89 SLDVLEIDGASHRGIEDIR-QINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGT 167 (451)
T ss_pred CCceEEeeccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchH
Confidence 0000 000001111111 112211 256778999998654 2344444444444446666666643 222221
Q ss_pred c-CCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 304 M-EAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 304 ~-~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
+ .....+++.+++.++....+.+.+ .++.+..|+..++|.+
T Consensus 168 I~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdl 216 (451)
T PRK06305 168 ILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSL 216 (451)
T ss_pred HHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 1 123478999999999988887653 2566788888888864
No 88
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=9.2e-06 Score=80.78 Aligned_cols=174 Identities=14% Similarity=0.149 Sum_probs=100.4
Q ss_pred CcccchhhhHHHHHHHhhccCc-eEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
..++|.+..++.|.+++..+.. ..+.++|+.|+||||+|+.++........... ..+...+... .+
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~----------~~pC~~C~~~---~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDL----------LEPCQECIEN---VN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCC----------CCchhHHHHh---hc
Confidence 4679999999999999988654 45689999999999999999876511110000 0000001000 00
Q ss_pred CCCc-----cccccChHHHHHHHHHHh-----cCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEE-ecCChhHHh
Q 038882 236 LFSE-----SWKNKSLVEKSCAIFKIL-----SNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLF-TTRYKEVCG 302 (347)
Q Consensus 236 ~~~~-----~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iii-TtR~~~v~~ 302 (347)
...+ .......++ .+.+.+.+ .+++-++|+|+++.. ..+..++..+-.....+.+|+ |+....+..
T Consensus 85 ~~~Dvieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~ 163 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPL 163 (725)
T ss_pred CCCcEEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhH
Confidence 0000 000011222 12222222 256679999999764 345555444443334555554 444444432
Q ss_pred h-cCCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 303 K-MEAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 303 ~-~~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
. ......+.+.+++.++....+...+ .++.+..|++.++|.+
T Consensus 164 TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~Gsl 213 (725)
T PRK07133 164 TILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSL 213 (725)
T ss_pred HHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 2 2223588999999999998887643 2455778888888864
No 89
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.35 E-value=2.1e-06 Score=88.27 Aligned_cols=170 Identities=15% Similarity=0.200 Sum_probs=97.0
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCC--C-CEEEEEEecCCCChHHHHHHHHHh
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHD--F-DIVIWVVVSKDLNLEKVQEDIGKK 233 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~--f-~~~~wv~vs~~~~~~~~~~~i~~~ 233 (347)
..++||+++++.+++.|......-+.++|++|+|||++|+.++.......-. . +..+|. + +...++ ..
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~----ag 249 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL----AG 249 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh----cc
Confidence 4579999999999999988766677899999999999999999876211111 1 234442 1 111111 11
Q ss_pred cCCCCccccccChHHHHHHHHHHh-cCCcEEEEEeCCCCcc---------cccccccCCCCCCCCcEEEEecCChhHHhh
Q 038882 234 IDLFSESWKNKSLVEKSCAIFKIL-SNKKFVLLLDDVWEPV---------DLTKVGVPIPNSTNASKVLFTTRYKEVCGK 303 (347)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~---------~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~ 303 (347)
... . ...++....+.+.+ ..++.+|++|++.... +...++.+.... ..-++|.+|........
T Consensus 250 ~~~-----~-ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g~l~~IgaTt~~ey~~~ 322 (821)
T CHL00095 250 TKY-----R-GEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-GELQCIGATTLDEYRKH 322 (821)
T ss_pred CCC-----c-cHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-CCcEEEEeCCHHHHHHH
Confidence 110 1 11222333333332 3578999999995321 112222222111 22456666655543211
Q ss_pred -------cCCCceeecCCCCHHHHHHHHhhhh-----------ChhhHHHHHHHhCC
Q 038882 304 -------MEAHKKLRVECLTADEAWMLFNVKV-----------GEDTIDKIFVKCCC 342 (347)
Q Consensus 304 -------~~~~~~~~l~~L~~~ea~~Lf~~~~-----------~~~~~~~I~~~~~G 342 (347)
......+.+...+.++...++.... .++.+..++..+++
T Consensus 323 ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~ 379 (821)
T CHL00095 323 IEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQ 379 (821)
T ss_pred HhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Confidence 1123467888899999888876432 24556666666553
No 90
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1.6e-05 Score=76.57 Aligned_cols=179 Identities=14% Similarity=0.108 Sum_probs=99.5
Q ss_pred CcccchhhhHHHHHHHhhccCce-EEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVG-IIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
..++|.+.-+..|.+++..+... .+.++|+.|+||||+|+.++.......... ..+++...-+..+-..-.
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~--------~~pc~~c~nc~~i~~g~~ 87 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQE--------GEPCGKCENCVEIDKGSF 87 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCC--------CCCCCccHHHHHHhcCCC
Confidence 45799999999999999886544 567899999999999999988751100000 000000000111110000
Q ss_pred CC---CccccccChHHHHHHHHHHh-----cCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEec-CChhHHhh-
Q 038882 236 LF---SESWKNKSLVEKSCAIFKIL-----SNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTT-RYKEVCGK- 303 (347)
Q Consensus 236 ~~---~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTt-R~~~v~~~- 303 (347)
.. -+.......++ ...+.+.+ .+++-++|+|+++.. ...+.+...+......+.+|++| +...+...
T Consensus 88 ~d~~eidaas~~gvd~-ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI 166 (486)
T PRK14953 88 PDLIEIDAASNRGIDD-IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTI 166 (486)
T ss_pred CcEEEEeCccCCCHHH-HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHH
Confidence 00 00000111111 11222222 356679999999765 23444544444334455555554 43333222
Q ss_pred cCCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 304 MEAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 304 ~~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
......+.+.+++.++....+.+.+ .++.+..|+..++|.+
T Consensus 167 ~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~l 214 (486)
T PRK14953 167 LSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGM 214 (486)
T ss_pred HHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 1223478999999999988888754 2466778888888865
No 91
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.34 E-value=1e-05 Score=77.32 Aligned_cols=169 Identities=15% Similarity=0.196 Sum_probs=97.4
Q ss_pred CcccchhhhH--HHHHHHhhcc-CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHh
Q 038882 157 PRIIGQESIF--DDVWRCIIEE-QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKK 233 (347)
Q Consensus 157 ~~~vGR~~~~--~~l~~~L~~~-~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 233 (347)
..++|-.... ....++..++ ....+.|+|.+|+|||+|++.+++.. .....-..++|++. .+++.++...
T Consensus 106 nFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l-~~~~~~~~v~yi~~------~~f~~~~~~~ 178 (440)
T PRK14088 106 NFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYV-VQNEPDLRVMYITS------EKFLNDLVDS 178 (440)
T ss_pred ccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHH-HHhCCCCeEEEEEH------HHHHHHHHHH
Confidence 3455754432 2333333322 23569999999999999999999986 22221124566643 4556666555
Q ss_pred cCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCccc---c-cccccCCCC-CCCCcEEEEecC-Chh--------
Q 038882 234 IDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPVD---L-TKVGVPIPN-STNASKVLFTTR-YKE-------- 299 (347)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~---~-~~l~~~l~~-~~~gs~iiiTtR-~~~-------- 299 (347)
+.. .+. ..+.+.+..+.-+|+|||++.... + ..+...+.. ...|..||+||. .+.
T Consensus 179 ~~~-------~~~----~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~r 247 (440)
T PRK14088 179 MKE-------GKL----NEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_pred Hhc-------ccH----HHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHH
Confidence 532 111 223333444566899999975311 1 122222110 123456888875 332
Q ss_pred HHhhcCCCceeecCCCCHHHHHHHHhhhhC-------hhhHHHHHHHhCCc
Q 038882 300 VCGKMEAHKKLRVECLTADEAWMLFNVKVG-------EDTIDKIFVKCCCH 343 (347)
Q Consensus 300 v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~-------~~~~~~I~~~~~G~ 343 (347)
+.+.+...-.+.+++.+.+.-..++.+.+. ++.+..|++.+.|.
T Consensus 248 L~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 248 LVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDN 298 (440)
T ss_pred HhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccC
Confidence 122333445789999999999999988752 56667777766653
No 92
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.34 E-value=8.3e-06 Score=73.36 Aligned_cols=130 Identities=12% Similarity=0.109 Sum_probs=70.8
Q ss_pred EEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHHhcC
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSN 259 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 259 (347)
.+.++|++|+|||++|+.++... ..........++.++. .+ +...+.. .+.......+.+ .
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l-~~~g~~~~~~~v~v~~----~~----l~~~~~g-------~~~~~~~~~~~~-a-- 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQIL-HRLGYVRKGHLVSVTR----DD----LVGQYIG-------HTAPKTKEILKR-A-- 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH-HHcCCcccceEEEecH----HH----HhHhhcc-------cchHHHHHHHHH-c--
Confidence 68899999999999998887766 2222222122444432 12 2222211 011111122222 1
Q ss_pred CcEEEEEeCCCCc-----------ccccccccCCCCCCCCcEEEEecCChhHHhhc--C------CCceeecCCCCHHHH
Q 038882 260 KKFVLLLDDVWEP-----------VDLTKVGVPIPNSTNASKVLFTTRYKEVCGKM--E------AHKKLRVECLTADEA 320 (347)
Q Consensus 260 kr~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~~--~------~~~~~~l~~L~~~ea 320 (347)
..-+|+||++... ..+..+...+.....+.+||+++........+ . ....+++++++.+|-
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl 200 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAEL 200 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHH
Confidence 3469999999632 11223333333334556777776543322111 1 124689999999999
Q ss_pred HHHHhhhh
Q 038882 321 WMLFNVKV 328 (347)
Q Consensus 321 ~~Lf~~~~ 328 (347)
.+++...+
T Consensus 201 ~~I~~~~l 208 (284)
T TIGR02880 201 LVIAGLML 208 (284)
T ss_pred HHHHHHHH
Confidence 99988765
No 93
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.33 E-value=5.3e-06 Score=77.90 Aligned_cols=69 Identities=20% Similarity=0.217 Sum_probs=57.3
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHH
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQE 228 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 228 (347)
..+++.+..++.+...|... +.+.++|++|+|||++|+.+++.. .....|..+.||.+++.++..+++.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhc
Confidence 45688889999999988764 577789999999999999999887 5556788889999999888777654
No 94
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1.3e-05 Score=79.54 Aligned_cols=181 Identities=11% Similarity=0.090 Sum_probs=105.6
Q ss_pred CcccchhhhHHHHHHHhhccCc-eEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
..++|.+.....|..++..+.. ..+.++|+.|+||||+|+.++... -...... . ....+.....++.+.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L-~c~~~~~-~----~~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSL-NCLNSDK-P----TPEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHh-cCCCcCC-C----CCCCCcccHHHHHHhcCCC
Confidence 4579999999999999987643 577899999999999999999886 2111110 0 0112222334444443322
Q ss_pred CCC---ccccccChHHHHHHHHHHh-----cCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCCh-hHHhhc
Q 038882 236 LFS---ESWKNKSLVEKSCAIFKIL-----SNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRYK-EVCGKM 304 (347)
Q Consensus 236 ~~~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~-~v~~~~ 304 (347)
..- +.......++....+ +.+ .+++-++|+|+++.. ..+..++..+......+.+|++|.+. .+...+
T Consensus 90 ~D~~ei~~~~~~~vd~IReii-~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 90 LDVIEIDAASNTGVDNIRELI-ERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred ccEEEEeccccCCHHHHHHHH-HHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHH
Confidence 100 000112222222222 222 245668999999765 34555555554444455556555443 232222
Q ss_pred C-CCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 305 E-AHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 305 ~-~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
. ....+.+..++.++....+.+.+ .++.+..|++.++|.+
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~l 216 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGL 216 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCH
Confidence 1 22467888999998887776543 2466788888888865
No 95
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=6.4e-06 Score=81.21 Aligned_cols=179 Identities=13% Similarity=0.127 Sum_probs=101.4
Q ss_pred CcccchhhhHHHHHHHhhccCc-eEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
..++|.++..+.|.+++..+.. ..+.++|+.|+||||+|+.+++.. --....+ ...++....+..|...-.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l-~c~~~~~-------~~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKAL-NCEQGLT-------AEPCNVCPPCVEITEGRS 87 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh-cCCCCCC-------CCCCCccHHHHHHhcCCC
Confidence 5689999999999999988765 456899999999999999998876 1111110 001111222222221110
Q ss_pred CCC---ccccccChHHHHHHHHHHh-----cCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEec-CChhHHhhc
Q 038882 236 LFS---ESWKNKSLVEKSCAIFKIL-----SNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTT-RYKEVCGKM 304 (347)
Q Consensus 236 ~~~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTt-R~~~v~~~~ 304 (347)
..- +.......++ ...+.+.+ .+++-++|+|+++.. ...+.++..+-.....+.+|++| ....+...+
T Consensus 88 ~d~~eid~~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI 166 (576)
T PRK14965 88 VDVFEIDGASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITI 166 (576)
T ss_pred CCeeeeeccCccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHH
Confidence 000 0000111112 12222222 245568999999765 33455554444444456666555 444443322
Q ss_pred C-CCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 305 E-AHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 305 ~-~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
. ....+++.+++.++....+...+ .++.+..|++.++|..
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~l 214 (576)
T PRK14965 167 LSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSM 214 (576)
T ss_pred HHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCH
Confidence 2 23478899999999887776543 2556777888877753
No 96
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.31 E-value=1.2e-05 Score=76.68 Aligned_cols=144 Identities=16% Similarity=0.174 Sum_probs=84.0
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHHh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKIL 257 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 257 (347)
...+.|+|++|+|||+|++.+++.. .. ....+++++ ...+...+...+.. .. ...++..+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l-~~--~~~~v~yi~------~~~f~~~~~~~l~~-------~~----~~~f~~~~ 200 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHAL-RE--SGGKILYVR------SELFTEHLVSAIRS-------GE----MQRFRQFY 200 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH-HH--cCCCEEEee------HHHHHHHHHHHHhc-------ch----HHHHHHHc
Confidence 3578899999999999999999987 22 123345553 33444455544431 00 12334433
Q ss_pred cCCcEEEEEeCCCCcccc----cccccCCCC-CCCCcEEEEecCCh---------hHHhhcCCCceeecCCCCHHHHHHH
Q 038882 258 SNKKFVLLLDDVWEPVDL----TKVGVPIPN-STNASKVLFTTRYK---------EVCGKMEAHKKLRVECLTADEAWML 323 (347)
Q Consensus 258 ~~kr~LlVlDdv~~~~~~----~~l~~~l~~-~~~gs~iiiTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~~L 323 (347)
+ ..-+|++||+...... +.+...+.. ...|..||+||... .+.+.+.....+.+.+++.++-..+
T Consensus 201 ~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~i 279 (445)
T PRK12422 201 R-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSF 279 (445)
T ss_pred c-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHH
Confidence 3 3458889999654221 122221110 12355788888542 2233344456889999999999999
Q ss_pred HhhhhC-------hhhHHHHHHHhCC
Q 038882 324 FNVKVG-------EDTIDKIFVKCCC 342 (347)
Q Consensus 324 f~~~~~-------~~~~~~I~~~~~G 342 (347)
+.+.+. ++.+.-|+..+.+
T Consensus 280 L~~k~~~~~~~l~~evl~~la~~~~~ 305 (445)
T PRK12422 280 LERKAEALSIRIEETALDFLIEALSS 305 (445)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhcCC
Confidence 988652 4444545554443
No 97
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.30 E-value=0.00018 Score=73.78 Aligned_cols=157 Identities=13% Similarity=0.134 Sum_probs=84.1
Q ss_pred CCcccchhhhHHHHHHHhhc------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHH
Q 038882 156 EPRIIGQESIFDDVWRCIIE------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQED 229 (347)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 229 (347)
...++|.++..+.|.+++.. ....++.++|++|+|||++|+.+++.. ...|- -++++...+..++.
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l---~~~~~---~i~~~~~~~~~~i~-- 390 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL---NRKFV---RFSLGGVRDEAEIR-- 390 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh---cCCeE---EEeCCCcccHHHHc--
Confidence 34578999988888886642 134589999999999999999999876 33332 22223222222221
Q ss_pred HHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCccc------cccccc--------CCCCC-------CCC
Q 038882 230 IGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPVD------LTKVGV--------PIPNS-------TNA 288 (347)
Q Consensus 230 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~------~~~l~~--------~l~~~-------~~g 288 (347)
+ ............+...+...- .++-+|+||+++.... ...+.. .|.+. ..+
T Consensus 391 -----g-~~~~~~g~~~g~i~~~l~~~~-~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~ 463 (775)
T TIGR00763 391 -----G-HRRTYVGAMPGRIIQGLKKAK-TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSK 463 (775)
T ss_pred -----C-CCCceeCCCCchHHHHHHHhC-cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCC
Confidence 1 011111112222333333332 3334789999965421 011111 11111 123
Q ss_pred cEEEEecCChhH--HhhcCCCceeecCCCCHHHHHHHHhhh
Q 038882 289 SKVLFTTRYKEV--CGKMEAHKKLRVECLTADEAWMLFNVK 327 (347)
Q Consensus 289 s~iiiTtR~~~v--~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 327 (347)
..+|.||..... .........+.+.+++.++-.+++.+.
T Consensus 464 v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~ 504 (775)
T TIGR00763 464 VIFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKY 504 (775)
T ss_pred EEEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHH
Confidence 344555554321 111222357899999998888877654
No 98
>PRK06620 hypothetical protein; Validated
Probab=98.27 E-value=2.8e-06 Score=73.09 Aligned_cols=123 Identities=15% Similarity=0.115 Sum_probs=74.0
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHHhc
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILS 258 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 258 (347)
+.+.|+|++|+|||+|++.+++.. .. .++. .... . . +.++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~---~~-----~~~~--~~~~----------------------~-~-------~~~~ 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS---NA-----YIIK--DIFF----------------------N-E-------EILE 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc---CC-----EEcc--hhhh----------------------c-h-------hHHh
Confidence 568999999999999999887654 11 1111 0000 0 0 0111
Q ss_pred CCcEEEEEeCCCCcccccccccCCC-CCCCCcEEEEecCChh-------HHhhcCCCceeecCCCCHHHHHHHHhhhh--
Q 038882 259 NKKFVLLLDDVWEPVDLTKVGVPIP-NSTNASKVLFTTRYKE-------VCGKMEAHKKLRVECLTADEAWMLFNVKV-- 328 (347)
Q Consensus 259 ~kr~LlVlDdv~~~~~~~~l~~~l~-~~~~gs~iiiTtR~~~-------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~-- 328 (347)
..-+|++||++...+ ..+...+. -...|..+|+|++... ..+.+...-.++++++++++-..++.+.+
T Consensus 85 -~~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 85 -KYNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred -cCCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 235788999963321 11111111 0134668999887542 33444455689999999999888887764
Q ss_pred -----ChhhHHHHHHHhCCc
Q 038882 329 -----GEDTIDKIFVKCCCH 343 (347)
Q Consensus 329 -----~~~~~~~I~~~~~G~ 343 (347)
.++.++-|++.+.|.
T Consensus 163 ~~l~l~~ev~~~L~~~~~~d 182 (214)
T PRK06620 163 SSVTISRQIIDFLLVNLPRE 182 (214)
T ss_pred cCCCCCHHHHHHHHHHccCC
Confidence 256666677766653
No 99
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=2.5e-05 Score=76.71 Aligned_cols=179 Identities=13% Similarity=0.110 Sum_probs=103.8
Q ss_pred CcccchhhhHHHHHHHhhccC-ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQ-VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
..++|.++..+.|.+++..+. ...+.++|+.|+||||+|+.+.... -.....+ ..+++....++.|.....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal-~c~~~~~-------~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAV-NCLNPPD-------GEPCNECEICKAITNGSL 87 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-cCCCCCC-------CCCCCccHHHHHHhcCCC
Confidence 568999999999999998764 4457789999999999999998765 2111100 112222223333332211
Q ss_pred CCCccc---cccChHHHHHHHHHHh-----cCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEec-CChhHHhhc
Q 038882 236 LFSESW---KNKSLVEKSCAIFKIL-----SNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTT-RYKEVCGKM 304 (347)
Q Consensus 236 ~~~~~~---~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTt-R~~~v~~~~ 304 (347)
..-... .....++. ..+.+.. .+++-++|+|+++.. ..+..++..+......+.+|++| ....+...+
T Consensus 88 ~dv~eidaas~~~vd~i-r~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI 166 (559)
T PRK05563 88 MDVIEIDAASNNGVDEI-RDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATI 166 (559)
T ss_pred CCeEEeeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHH
Confidence 100000 01112222 2222221 346678899999765 34555554444434455555554 333332221
Q ss_pred -CCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 305 -EAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 305 -~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
.....+...+++.++....+...+ .++.+..|++.++|.+
T Consensus 167 ~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~ 214 (559)
T PRK05563 167 LSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGM 214 (559)
T ss_pred HhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 223468899999999988887654 2456778888888865
No 100
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.27 E-value=1.8e-05 Score=74.39 Aligned_cols=164 Identities=16% Similarity=0.175 Sum_probs=94.1
Q ss_pred CcccchhhhHHHHHHHhhc-------------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCCh
Q 038882 157 PRIIGQESIFDDVWRCIIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNL 223 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 223 (347)
.++.|.+...+.|.+.+.- ...+-+.++|++|+|||+||+.+++.. ...| +.+..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~f---i~i~~------ 212 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATF---IRVVG------ 212 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE---EEEeh------
Confidence 4578888888887776532 135678899999999999999999875 3333 12211
Q ss_pred HHHHHHHHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCcc------------c----ccccccCCC--CC
Q 038882 224 EKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPV------------D----LTKVGVPIP--NS 285 (347)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------~----~~~l~~~l~--~~ 285 (347)
..+ ..... ......+...+.......+.+|+||+++... . +..+...+. ..
T Consensus 213 s~l----~~k~~-------ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~ 281 (398)
T PTZ00454 213 SEF----VQKYL-------GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ 281 (398)
T ss_pred HHH----HHHhc-------chhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC
Confidence 111 11110 1111122222333335678999999986421 0 111111111 12
Q ss_pred CCCcEEEEecCChhHHhh--cC---CCceeecCCCCHHHHHHHHhhhhC------hhhHHHHHHHhCCc
Q 038882 286 TNASKVLFTTRYKEVCGK--ME---AHKKLRVECLTADEAWMLFNVKVG------EDTIDKIFVKCCCH 343 (347)
Q Consensus 286 ~~gs~iiiTtR~~~v~~~--~~---~~~~~~l~~L~~~ea~~Lf~~~~~------~~~~~~I~~~~~G~ 343 (347)
..+..||.||...+.... +. -...+.++..+.++..++|..... +-...++++.+.|.
T Consensus 282 ~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~ 350 (398)
T PTZ00454 282 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKI 350 (398)
T ss_pred CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCC
Confidence 345678888876654321 22 234688898898888888876542 22456677777665
No 101
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.26 E-value=2e-05 Score=73.17 Aligned_cols=183 Identities=15% Similarity=0.138 Sum_probs=114.9
Q ss_pred CCcccchhhhHHHHHHHhhc----cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHH
Q 038882 156 EPRIIGQESIFDDVWRCIIE----EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIG 231 (347)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 231 (347)
+..++||+.+++.+.+++.. +..+.+-|.|-+|.|||.+...++.+. .....--+++++++..-.....++..|.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~-~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSL-SKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhh-hhhcccceeEEEeeccccchHHHHHHHH
Confidence 46789999999999998866 356788899999999999999999887 2222223567887776667778888887
Q ss_pred HhcCCCCccccccChHHHHHHHHHHhcC--CcEEEEEeCCCCcc--cccccccC--CCCCCCCcEEEEecC-C-hhH---
Q 038882 232 KKIDLFSESWKNKSLVEKSCAIFKILSN--KKFVLLLDDVWEPV--DLTKVGVP--IPNSTNASKVLFTTR-Y-KEV--- 300 (347)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~--~~~~l~~~--l~~~~~gs~iiiTtR-~-~~v--- 300 (347)
..+-.... ......+....+.....+ ..+|+|+|+++... .-..+... ++. -+++|+|+.-- + -+.
T Consensus 228 ~~~~q~~~--s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~-lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 228 SSLLQDLV--SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPK-LPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHhc--CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhccc-CCcceeeeeeehhhhhHHHH
Confidence 77621000 111225556666666655 36999999997641 11111111 222 23555544321 1 111
Q ss_pred -HhhcC-----CCceeecCCCCHHHHHHHHhhhhC--------hhhHHHHHHHhCC
Q 038882 301 -CGKME-----AHKKLRVECLTADEAWMLFNVKVG--------EDTIDKIFVKCCC 342 (347)
Q Consensus 301 -~~~~~-----~~~~~~l~~L~~~ea~~Lf~~~~~--------~~~~~~I~~~~~G 342 (347)
...+. ....+..+|.+.++-.++|..++. +..++.+++++-|
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa 360 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAA 360 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhcc
Confidence 11111 124678899999999999998863 2345556666554
No 102
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.25 E-value=1.1e-05 Score=77.51 Aligned_cols=147 Identities=16% Similarity=0.211 Sum_probs=87.1
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHHh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKIL 257 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 257 (347)
...+.|+|++|+|||+|++.+++.. .....-..+++++.. ++..++...+.. ... ..+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~-~~~~~~~~v~yi~~~------~~~~~~~~~~~~-------~~~----~~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYI-LEKNPNAKVVYVTSE------KFTNDFVNALRN-------NTM----EEFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-HHhCCCCeEEEEEHH------HHHHHHHHHHHc-------CcH----HHHHHHH
Confidence 3578999999999999999999987 222212345565443 334444444321 111 2333344
Q ss_pred cCCcEEEEEeCCCCccc---c-cccccCCCC-CCCCcEEEEecCChh---------HHhhcCCCceeecCCCCHHHHHHH
Q 038882 258 SNKKFVLLLDDVWEPVD---L-TKVGVPIPN-STNASKVLFTTRYKE---------VCGKMEAHKKLRVECLTADEAWML 323 (347)
Q Consensus 258 ~~kr~LlVlDdv~~~~~---~-~~l~~~l~~-~~~gs~iiiTtR~~~---------v~~~~~~~~~~~l~~L~~~ea~~L 323 (347)
+ +.-+|+|||++.... + +.+...+.. ...|..+|+||.... +.+.+.....+++++.+.++-..+
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 4 345899999965311 1 222221110 123455888776532 233444445789999999999999
Q ss_pred Hhhhh-------ChhhHHHHHHHhCCc
Q 038882 324 FNVKV-------GEDTIDKIFVKCCCH 343 (347)
Q Consensus 324 f~~~~-------~~~~~~~I~~~~~G~ 343 (347)
+.+.+ .++.++.|++.+.|.
T Consensus 289 l~~~~~~~~~~l~~e~l~~ia~~~~~~ 315 (450)
T PRK00149 289 LKKKAEEEGIDLPDEVLEFIAKNITSN 315 (450)
T ss_pred HHHHHHHcCCCCCHHHHHHHHcCcCCC
Confidence 99876 255666676666654
No 103
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.25 E-value=9.9e-06 Score=83.64 Aligned_cols=154 Identities=14% Similarity=0.189 Sum_probs=87.8
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCC----CCEEEEEEecCCCChHHHHHHHHH
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHD----FDIVIWVVVSKDLNLEKVQEDIGK 232 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~----f~~~~wv~vs~~~~~~~~~~~i~~ 232 (347)
..++||+++++.++..|.......+.++|++|+|||++|+.++... ..... ....+|.. ++..+ +.
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i-~~~~~p~~l~~~~~~~l-----~~~~l----~a 242 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRI-VNGDVPESLKNKRLLAL-----DMGAL----IA 242 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH-hccCCchhhcCCeEEEe-----eHHHH----hh
Confidence 4589999999999999988766777799999999999999998876 21111 12223321 11111 10
Q ss_pred hcCCCCccccccChHHHHHHHHHHh-c-CCcEEEEEeCCCCcc---------cccccccCCCCCCCCcEEEEecCChhHH
Q 038882 233 KIDLFSESWKNKSLVEKSCAIFKIL-S-NKKFVLLLDDVWEPV---------DLTKVGVPIPNSTNASKVLFTTRYKEVC 301 (347)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~~l~~~l-~-~kr~LlVlDdv~~~~---------~~~~l~~~l~~~~~gs~iiiTtR~~~v~ 301 (347)
... .. ...+.....+.+.+ + +++.+|++|++.... +...++.+.... ..-++|-+|......
T Consensus 243 ~~~-----~~-g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~-g~i~~IgaTt~~e~r 315 (852)
T TIGR03346 243 GAK-----YR-GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR-GELHCIGATTLDEYR 315 (852)
T ss_pred cch-----hh-hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc-CceEEEEeCcHHHHH
Confidence 000 00 11222233333333 2 468999999996532 112222232221 223455555544331
Q ss_pred hh-------cCCCceeecCCCCHHHHHHHHhhh
Q 038882 302 GK-------MEAHKKLRVECLTADEAWMLFNVK 327 (347)
Q Consensus 302 ~~-------~~~~~~~~l~~L~~~ea~~Lf~~~ 327 (347)
.. ......+.++..+.++...++...
T Consensus 316 ~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 316 KYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred HHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 11 112246788888999999988754
No 104
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.24 E-value=1.6e-05 Score=74.92 Aligned_cols=135 Identities=21% Similarity=0.196 Sum_probs=86.7
Q ss_pred hhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccc
Q 038882 162 QESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESW 241 (347)
Q Consensus 162 R~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 241 (347)
|.+-+.++.+.+..... ++.|.|+-++|||||++.+.... ... .+++...+...-..-+
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~---~~~---~iy~~~~d~~~~~~~l-------------- 80 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGL---LEE---IIYINFDDLRLDRIEL-------------- 80 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhC---Ccc---eEEEEecchhcchhhH--------------
Confidence 44555666666555444 99999999999999997776654 121 4555433221111100
Q ss_pred cccChHHHHHHHHHHhcCCcEEEEEeCCCCcccccccccCCCCCCCCcEEEEecCChhHH-----hhc-CCCceeecCCC
Q 038882 242 KNKSLVEKSCAIFKILSNKKFVLLLDDVWEPVDLTKVGVPIPNSTNASKVLFTTRYKEVC-----GKM-EAHKKLRVECL 315 (347)
Q Consensus 242 ~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~-----~~~-~~~~~~~l~~L 315 (347)
.+....+.+.-..++..++||.|....+|......+.+..+. +|++|+-+.... ..+ +....+.+.||
T Consensus 81 -----~d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~Pl 154 (398)
T COG1373 81 -----LDLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPL 154 (398)
T ss_pred -----HHHHHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCC
Confidence 111112222222277899999999999999988888777666 899988876542 222 23457899999
Q ss_pred CHHHHHHH
Q 038882 316 TADEAWML 323 (347)
Q Consensus 316 ~~~ea~~L 323 (347)
|-.|...+
T Consensus 155 SF~Efl~~ 162 (398)
T COG1373 155 SFREFLKL 162 (398)
T ss_pred CHHHHHhh
Confidence 99998764
No 105
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=3.4e-05 Score=70.26 Aligned_cols=187 Identities=11% Similarity=0.101 Sum_probs=105.6
Q ss_pred CcccchhhhHHHHHHHhhccCc-eEEEEEeCCCCchHHHHHHHHHhhhccC------------CCCCEEEEEEecCCCCh
Q 038882 157 PRIIGQESIFDDVWRCIIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCHER------------HDFDIVIWVVVSKDLNL 223 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------~~f~~~~wv~vs~~~~~ 223 (347)
..++|.+...+.|.+.+..+.. ....++|+.|+||+++|..+........ ....-..|+.-.....-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 4579999999999999988764 7889999999999999999887762111 11112233321100000
Q ss_pred HHHHHHHHHhcCCCCccccccChHHHHHHHHHHhc-----CCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecC
Q 038882 224 EKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILS-----NKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTR 296 (347)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR 296 (347)
..+-..-+...+...........++ ...+.+.+. +++-++|+|+++.. .....++..+-..+ .+.+|++|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred cccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEEC
Confidence 0000000111110000001112222 233444443 46779999999765 23444444443333 345555554
Q ss_pred Ch-hHHhhcC-CCceeecCCCCHHHHHHHHhhhhChh----hHHHHHHHhCCccc
Q 038882 297 YK-EVCGKME-AHKKLRVECLTADEAWMLFNVKVGED----TIDKIFVKCCCHTF 345 (347)
Q Consensus 297 ~~-~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~----~~~~I~~~~~G~PL 345 (347)
+. .+...+. ....+.+.+++.++..+.+.+....+ ....++..++|.|.
T Consensus 162 ~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~l~~~a~Gs~~ 216 (314)
T PRK07399 162 SPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILNINFPELLALAQGSPG 216 (314)
T ss_pred ChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccchhHHHHHHHHcCCCHH
Confidence 44 3332222 23578999999999999999875422 13678999999884
No 106
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=3.9e-05 Score=75.25 Aligned_cols=179 Identities=14% Similarity=0.141 Sum_probs=104.3
Q ss_pred CcccchhhhHHHHHHHhhccCce-EEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVG-IIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
..++|-+..+..|.+++..+... .+.++|+.|+||||+|+.+++.. -....... ..+..-...+.+...-.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L-~c~~~~~~-------~pC~~C~~C~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCL-NCVNGPTP-------MPCGECSSCKSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh-ccccCCCC-------CCCccchHHHHHHcCCC
Confidence 46899999999999999886544 58899999999999999999876 21111100 00111111122221110
Q ss_pred CCC---ccccccChHHHHHHHHHH-----hcCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCC-hhHHhhc
Q 038882 236 LFS---ESWKNKSLVEKSCAIFKI-----LSNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRY-KEVCGKM 304 (347)
Q Consensus 236 ~~~---~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~-~~v~~~~ 304 (347)
..- +.......++... +.+. ..+++-++|+|++... ..++.++..+......+.+|++|.. ..+...+
T Consensus 88 ~dv~~idgas~~~vddIr~-l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI 166 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVRQ-IKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATI 166 (563)
T ss_pred CCeEEecCcccCCHHHHHH-HHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHH
Confidence 000 0000112222222 2211 2356678999999665 3455665555544556666666544 3332222
Q ss_pred -CCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 305 -EAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 305 -~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
.....+++.+++.++....+.+.+ .++.+..|++.++|.+
T Consensus 167 ~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~Gdl 214 (563)
T PRK06647 167 KSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSV 214 (563)
T ss_pred HHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 123468999999999988887654 2566777888888865
No 107
>CHL00181 cbbX CbbX; Provisional
Probab=98.20 E-value=2.6e-05 Score=70.19 Aligned_cols=131 Identities=13% Similarity=0.099 Sum_probs=71.0
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHHhc
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILS 258 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 258 (347)
..+.++|++|+|||++|+.+++.. .....-...-|+.++. .++ ...+.. .........+.+ .
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~-~~~g~~~~~~~~~v~~----~~l----~~~~~g-------~~~~~~~~~l~~-a- 121 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADIL-YKLGYIKKGHLLTVTR----DDL----VGQYIG-------HTAPKTKEVLKK-A- 121 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH-HHcCCCCCCceEEecH----HHH----HHHHhc-------cchHHHHHHHHH-c-
Confidence 358899999999999999998865 2212111112444431 122 221111 001111112222 1
Q ss_pred CCcEEEEEeCCCCc-----------ccccccccCCCCCCCCcEEEEecCChhHHhhc--------CCCceeecCCCCHHH
Q 038882 259 NKKFVLLLDDVWEP-----------VDLTKVGVPIPNSTNASKVLFTTRYKEVCGKM--------EAHKKLRVECLTADE 319 (347)
Q Consensus 259 ~kr~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~~--------~~~~~~~l~~L~~~e 319 (347)
..-+|+||++... +....+...+.+...+.+||+++........+ .....+.+++++.++
T Consensus 122 -~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~e 200 (287)
T CHL00181 122 -MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEE 200 (287)
T ss_pred -cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHH
Confidence 2359999999652 11122223333334556777777644332111 123478999999999
Q ss_pred HHHHHhhhh
Q 038882 320 AWMLFNVKV 328 (347)
Q Consensus 320 a~~Lf~~~~ 328 (347)
..+++.+.+
T Consensus 201 l~~I~~~~l 209 (287)
T CHL00181 201 LLQIAKIML 209 (287)
T ss_pred HHHHHHHHH
Confidence 999998765
No 108
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.19 E-value=1.3e-05 Score=77.18 Aligned_cols=160 Identities=17% Similarity=0.190 Sum_probs=88.5
Q ss_pred CcccchhhhHHHHHHHhhc-------------cCceEEEEEeCCCCchHHHHHHHHHhhhccCC---CCCEEEEEEecCC
Q 038882 157 PRIIGQESIFDDVWRCIIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERH---DFDIVIWVVVSKD 220 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---~f~~~~wv~vs~~ 220 (347)
..+.|.+..++.|.+.+.. ...+-+.++|++|+|||++|+.+++.. .... ......++++...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL-~~~i~~~~~~~~~fl~v~~~ 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL-AQRIGAETGDKSYFLNIKGP 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh-ccccccccCCceeEEeccch
Confidence 3467899988888887642 134568999999999999999999986 2110 1123344444321
Q ss_pred CChHHHHHHHHHhcCCCCccccccChHHHHHHHHHHh-cCCcEEEEEeCCCCcc---------c-----ccccccCCCC-
Q 038882 221 LNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKIL-SNKKFVLLLDDVWEPV---------D-----LTKVGVPIPN- 284 (347)
Q Consensus 221 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~---------~-----~~~l~~~l~~- 284 (347)
+++..... . .......+....++.. .+++++|+||+++... + ...++..+..
T Consensus 261 --------eLl~kyvG--e--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 261 --------ELLNKYVG--E--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGV 328 (512)
T ss_pred --------hhcccccc--h--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccc
Confidence 11111100 0 0001111112222221 3478999999997531 1 1122222221
Q ss_pred -CCCCcEEEEecCChhHHh--hc---CCCceeecCCCCHHHHHHHHhhhhC
Q 038882 285 -STNASKVLFTTRYKEVCG--KM---EAHKKLRVECLTADEAWMLFNVKVG 329 (347)
Q Consensus 285 -~~~gs~iiiTtR~~~v~~--~~---~~~~~~~l~~L~~~ea~~Lf~~~~~ 329 (347)
...+..||.||....... .+ .-...|.++..+.++..++|..++.
T Consensus 329 ~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 329 ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 123445566766554321 11 1234689999999999999988764
No 109
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.19 E-value=1.2e-05 Score=82.74 Aligned_cols=46 Identities=22% Similarity=0.375 Sum_probs=41.6
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..++||+++++.+++.|......-+.++|++|+|||+||+.+....
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999988776778899999999999999999876
No 110
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.15 E-value=9.3e-06 Score=64.18 Aligned_cols=89 Identities=22% Similarity=0.116 Sum_probs=49.4
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHHhc
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILS 258 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 258 (347)
..+.|+|++|+||||+++.++... ......++++..+........... ..... . .............+.+..+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~-~~~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL---GPPGGGVIYIDGEDILEEVLDQLL-LIIVG--G-KKASGSGELRLRLALALAR 75 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc---CCCCCCEEEECCEEccccCHHHHH-hhhhh--c-cCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999876 222234556555443322221111 00000 0 1111222233334444444
Q ss_pred CC-cEEEEEeCCCCccc
Q 038882 259 NK-KFVLLLDDVWEPVD 274 (347)
Q Consensus 259 ~k-r~LlVlDdv~~~~~ 274 (347)
.. ..+|++|+++....
T Consensus 76 ~~~~~viiiDei~~~~~ 92 (148)
T smart00382 76 KLKPDVLILDEITSLLD 92 (148)
T ss_pred hcCCCEEEEECCcccCC
Confidence 43 49999999977633
No 111
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.15 E-value=6.5e-07 Score=81.80 Aligned_cols=159 Identities=21% Similarity=0.237 Sum_probs=109.0
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCC-EEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFD-IVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFK 255 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 255 (347)
..+.+.++|.|||||||++-.+.. . ...|. .+.++.+..-.+...+.-.....++.+. .+.+.....+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~---~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~-----~~g~~~~~~~~~ 83 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-A---ASEYADGVAFVDLAPITDPALVFPTLAGALGLHV-----QPGDSAVDTLVR 83 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-H---hhhcccceeeeeccccCchhHhHHHHHhhccccc-----ccchHHHHHHHH
Confidence 358899999999999999999987 4 45554 5566666666666666666666676532 222334556777
Q ss_pred HhcCCcEEEEEeCCCCccc-ccccccCCCCCCCCcEEEEecCChhHHhhcCCCceeecCCCCHH-HHHHHHhhhhC----
Q 038882 256 ILSNKKFVLLLDDVWEPVD-LTKVGVPIPNSTNASKVLFTTRYKEVCGKMEAHKKLRVECLTAD-EAWMLFNVKVG---- 329 (347)
Q Consensus 256 ~l~~kr~LlVlDdv~~~~~-~~~l~~~l~~~~~gs~iiiTtR~~~v~~~~~~~~~~~l~~L~~~-ea~~Lf~~~~~---- 329 (347)
...++|.++|+||.....+ -..+...+..+...-.|+.|+|.... ......+.+++|+.. ++.++|...+.
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhcc
Confidence 7888999999999865421 11222223334445568888886543 233456788888865 78888876542
Q ss_pred --------hhhHHHHHHHhCCcccCC
Q 038882 330 --------EDTIDKIFVKCCCHTFVI 347 (347)
Q Consensus 330 --------~~~~~~I~~~~~G~PLAi 347 (347)
.....+|.++..|.||+|
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~lai 186 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAI 186 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHH
Confidence 356889999999999985
No 112
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.14 E-value=1.3e-05 Score=81.10 Aligned_cols=155 Identities=19% Similarity=0.296 Sum_probs=89.9
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCC---CCEEEEEEecCCCChHHHHHHHHHh
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHD---FDIVIWVVVSKDLNLEKVQEDIGKK 233 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~---f~~~~wv~vs~~~~~~~~~~~i~~~ 233 (347)
+.++||+++++.+++.|......-+.++|++|+|||++|+.++......... .++.+|.. ++. .++..
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~----~llaG 256 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIG----SLLAG 256 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHH----HHhcc
Confidence 4589999999999999988655666789999999999999998875222112 23444421 111 11110
Q ss_pred cCCCCccccccChHHHHHHHHHHh-cCCcEEEEEeCCCCc----------ccccccccCCCCCCCCcEEEEecCChhHHh
Q 038882 234 IDLFSESWKNKSLVEKSCAIFKIL-SNKKFVLLLDDVWEP----------VDLTKVGVPIPNSTNASKVLFTTRYKEVCG 302 (347)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~----------~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~ 302 (347)
.. . ..+.+.....+.+.+ +.++.+|+||++... .+...++.++... ..-++|-+|...+...
T Consensus 257 ~~-----~-~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~E~~~ 329 (758)
T PRK11034 257 TK-----Y-RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEFSN 329 (758)
T ss_pred cc-----h-hhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChHHHHH
Confidence 00 0 012222333333333 346789999999643 1122222332221 2345555555443211
Q ss_pred h-------cCCCceeecCCCCHHHHHHHHhhh
Q 038882 303 K-------MEAHKKLRVECLTADEAWMLFNVK 327 (347)
Q Consensus 303 ~-------~~~~~~~~l~~L~~~ea~~Lf~~~ 327 (347)
. ......+.++.++.++..+++...
T Consensus 330 ~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 330 IFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred HhhccHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 1 112247899999999999999864
No 113
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=4.1e-05 Score=70.16 Aligned_cols=159 Identities=10% Similarity=0.037 Sum_probs=90.5
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCC------CccccccChHHHHH
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLF------SESWKNKSLVEKSC 251 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~------~~~~~~~~~~~~~~ 251 (347)
...+.++|+.|+|||++|+.++.... -..... ...+..-...+.+...-... .........++...
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~ll-C~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~ 93 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALL-CEAPQG-------GGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRE 93 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHc-CCCCCC-------CCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHH
Confidence 45688999999999999999988772 111110 01111122222222211100 00001122233332
Q ss_pred HHHHHh-----cCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCChhH-Hhhc-CCCceeecCCCCHHHHHH
Q 038882 252 AIFKIL-----SNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRYKEV-CGKM-EAHKKLRVECLTADEAWM 322 (347)
Q Consensus 252 ~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~~v-~~~~-~~~~~~~l~~L~~~ea~~ 322 (347)
+.+.+ .+++-++|+|+++.. .....++..+-....++.+|+||.+... ...+ .....+.+.+++.+++.+
T Consensus 94 -l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~ 172 (328)
T PRK05707 94 -LVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQ 172 (328)
T ss_pred -HHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHH
Confidence 33332 234556678999775 3455555555444457778888877643 2222 223478999999999999
Q ss_pred HHhhhh---ChhhHHHHHHHhCCccc
Q 038882 323 LFNVKV---GEDTIDKIFVKCCCHTF 345 (347)
Q Consensus 323 Lf~~~~---~~~~~~~I~~~~~G~PL 345 (347)
.+.+.. .++....++..++|.|+
T Consensus 173 ~L~~~~~~~~~~~~~~~l~la~Gsp~ 198 (328)
T PRK05707 173 WLQQALPESDERERIELLTLAGGSPL 198 (328)
T ss_pred HHHHhcccCChHHHHHHHHHcCCCHH
Confidence 998753 34556778899999885
No 114
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.11 E-value=9.3e-06 Score=63.92 Aligned_cols=22 Identities=50% Similarity=0.602 Sum_probs=20.5
Q ss_pred EEEEeCCCCchHHHHHHHHHhh
Q 038882 181 IGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 181 i~I~G~~GiGKTtLa~~v~~~~ 202 (347)
|.|+|++|+|||++|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999999999986
No 115
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=7.5e-05 Score=68.68 Aligned_cols=162 Identities=9% Similarity=0.034 Sum_probs=90.1
Q ss_pred cccc-hhhhHHHHHHHhhccCc-eEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcC
Q 038882 158 RIIG-QESIFDDVWRCIIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 158 ~~vG-R~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
.++| -+..++.|.+.+..+.. ....++|+.|+|||++|+.+.... --....... .+......+.+...-.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l-~c~~~~~~~-------~cg~C~~c~~~~~~~h 77 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSL-FCLERNGVE-------PCGTCTNCKRIDSGNH 77 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH-CCCCCCCCC-------CCCcCHHHHHHhcCCC
Confidence 4566 66677888888877654 456899999999999999998876 111111100 1111112222211110
Q ss_pred CC----CccccccChHHHHHHHHHH----hcCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCChh-HHhhc
Q 038882 236 LF----SESWKNKSLVEKSCAIFKI----LSNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRYKE-VCGKM 304 (347)
Q Consensus 236 ~~----~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~~-v~~~~ 304 (347)
.. .........++....+... ..+++=++|+|+++.. ...+.++..+...+.++.+|++|.+.. +...+
T Consensus 78 pD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TI 157 (329)
T PRK08058 78 PDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTI 157 (329)
T ss_pred CCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHH
Confidence 00 0000111222332222211 2345668999998665 234455555555556777887776543 22222
Q ss_pred -CCCceeecCCCCHHHHHHHHhhh
Q 038882 305 -EAHKKLRVECLTADEAWMLFNVK 327 (347)
Q Consensus 305 -~~~~~~~l~~L~~~ea~~Lf~~~ 327 (347)
.....+++.+++.++..+.+.+.
T Consensus 158 rSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 158 LSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HhhceeeeCCCCCHHHHHHHHHHc
Confidence 22357899999999998888764
No 116
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.09 E-value=2.7e-05 Score=76.00 Aligned_cols=145 Identities=14% Similarity=0.124 Sum_probs=86.5
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHHhc
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILS 258 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 258 (347)
..+.|+|..|+|||.|++.+++.. .....-..++|++ ..++..++...+.. .. ...+.+.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a-~~~~~g~~V~Yit------aeef~~el~~al~~-------~~----~~~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYA-RRLYPGTRVRYVS------SEEFTNEFINSIRD-------GK----GDSFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH-HHhCCCCeEEEee------HHHHHHHHHHHHHh-------cc----HHHHHHHhh
Confidence 458999999999999999999986 2211123445654 34444454443321 01 122333333
Q ss_pred CCcEEEEEeCCCCc---cccc-ccccCCCC-CCCCcEEEEecCCh---------hHHhhcCCCceeecCCCCHHHHHHHH
Q 038882 259 NKKFVLLLDDVWEP---VDLT-KVGVPIPN-STNASKVLFTTRYK---------EVCGKMEAHKKLRVECLTADEAWMLF 324 (347)
Q Consensus 259 ~kr~LlVlDdv~~~---~~~~-~l~~~l~~-~~~gs~iiiTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf 324 (347)
+ .=+|+|||+... ..|. .+...+.. ...|..|||||... .+.+.+...-.+.+++.+.+.-..++
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence 3 357889999654 2222 12221211 12356688888753 23445555668899999999999999
Q ss_pred hhhhC-------hhhHHHHHHHhCC
Q 038882 325 NVKVG-------EDTIDKIFVKCCC 342 (347)
Q Consensus 325 ~~~~~-------~~~~~~I~~~~~G 342 (347)
.+++. ++.++-|++.+.+
T Consensus 456 ~kka~~r~l~l~~eVi~yLa~r~~r 480 (617)
T PRK14086 456 RKKAVQEQLNAPPEVLEFIASRISR 480 (617)
T ss_pred HHHHHhcCCCCCHHHHHHHHHhccC
Confidence 98763 4555555555443
No 117
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.08 E-value=0.00015 Score=70.60 Aligned_cols=164 Identities=12% Similarity=0.108 Sum_probs=90.0
Q ss_pred CcccchhhhHHHHHHHhh---c---------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChH
Q 038882 157 PRIIGQESIFDDVWRCII---E---------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLE 224 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~---~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 224 (347)
.+++|.++..+.+.+++. . ...+-+.++|++|+|||+||+.+++.. ..+| +.++. .
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~-----~~i~~----~ 122 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPF-----FSISG----S 122 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCe-----eeccH----H
Confidence 457888776655554332 2 123458899999999999999998865 2222 22221 1
Q ss_pred HHHHHHHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCccc------------c----cccccCCC--CCC
Q 038882 225 KVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPVD------------L----TKVGVPIP--NST 286 (347)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~------------~----~~l~~~l~--~~~ 286 (347)
++.. ... ......+...+.......+++|+|||++.... + ..++..+. ...
T Consensus 123 ~~~~----~~~-------g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 123 DFVE----MFV-------GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred HHHH----HHh-------cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 1111 110 11122233333344456789999999965310 0 11111111 122
Q ss_pred CCcEEEEecCChhHHh-----hcCCCceeecCCCCHHHHHHHHhhhhC------hhhHHHHHHHhCCc
Q 038882 287 NASKVLFTTRYKEVCG-----KMEAHKKLRVECLTADEAWMLFNVKVG------EDTIDKIFVKCCCH 343 (347)
Q Consensus 287 ~gs~iiiTtR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~~------~~~~~~I~~~~~G~ 343 (347)
.+..||.||....... ...-...+.++..+.++-.++|...+. +.....++..+.|.
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~ 259 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGF 259 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCC
Confidence 3445666776554211 112235788898898888888877642 23466777777664
No 118
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.07 E-value=3.3e-05 Score=73.25 Aligned_cols=164 Identities=15% Similarity=0.154 Sum_probs=93.6
Q ss_pred CcccchhhhHHHHHHHhhc-------------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCCh
Q 038882 157 PRIIGQESIFDDVWRCIIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNL 223 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 223 (347)
.++.|.+..++.|.+.+.- ....-+.++|++|+|||+||+.+++.. ...| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~f-----i~V~~s--- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATF-----LRVVGS--- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCE-----EEEecc---
Confidence 3467899888888877642 134568899999999999999999876 3333 222111
Q ss_pred HHHHHHHHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCccc----------------ccccccCCC--CC
Q 038882 224 EKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPVD----------------LTKVGVPIP--NS 285 (347)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----------------~~~l~~~l~--~~ 285 (347)
.+ ..... ..........+.....+.+.+|+||+++.... +..++..+. ..
T Consensus 252 -eL----~~k~~-------Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~ 319 (438)
T PTZ00361 252 -EL----IQKYL-------GDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS 319 (438)
T ss_pred -hh----hhhhc-------chHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc
Confidence 11 11110 11111122222223345789999999853210 011111111 12
Q ss_pred CCCcEEEEecCChhHHhh--cC---CCceeecCCCCHHHHHHHHhhhhC------hhhHHHHHHHhCCc
Q 038882 286 TNASKVLFTTRYKEVCGK--ME---AHKKLRVECLTADEAWMLFNVKVG------EDTIDKIFVKCCCH 343 (347)
Q Consensus 286 ~~gs~iiiTtR~~~v~~~--~~---~~~~~~l~~L~~~ea~~Lf~~~~~------~~~~~~I~~~~~G~ 343 (347)
..+.+||.||...+.... +. ....+.++..+.++..++|..+.. +-....++..+.|+
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~ 388 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDEL 388 (438)
T ss_pred cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCC
Confidence 335678888876654322 11 234789999999999999987652 22355666666553
No 119
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.0036 Score=61.56 Aligned_cols=158 Identities=18% Similarity=0.194 Sum_probs=91.7
Q ss_pred CCcccchhhhHHHHHHHhhc------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHH
Q 038882 156 EPRIIGQESIFDDVWRCIIE------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQED 229 (347)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 229 (347)
+.+-+|.++-.++|++.|.- -..++++++|+||+|||+|++.++... ...| +-++++.--+..++-
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~Rkf---vR~sLGGvrDEAEIR-- 393 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKF---VRISLGGVRDEAEIR-- 393 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCE---EEEecCccccHHHhc--
Confidence 34558999999999998853 256899999999999999999999877 4444 333444444443331
Q ss_pred HHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCcc------------------cccccccCCCCCCC-CcE
Q 038882 230 IGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPV------------------DLTKVGVPIPNSTN-ASK 290 (347)
Q Consensus 230 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------------~~~~l~~~l~~~~~-gs~ 290 (347)
.+....-..=+....+.+.+ .+.++=+++||.++... +-..|..++.+... =|.
T Consensus 394 ------GHRRTYIGamPGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~ 466 (782)
T COG0466 394 ------GHRRTYIGAMPGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSK 466 (782)
T ss_pred ------cccccccccCChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhh
Confidence 11111111112223333333 24577889999986541 11111111111111 133
Q ss_pred E-EEecCCh-h-H-HhhcCCCceeecCCCCHHHHHHHHhhhh
Q 038882 291 V-LFTTRYK-E-V-CGKMEAHKKLRVECLTADEAWMLFNVKV 328 (347)
Q Consensus 291 i-iiTtR~~-~-v-~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 328 (347)
| .|||-+. + + ...+....++++.+-+++|-.++-++++
T Consensus 467 VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 467 VMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 3 4455443 2 1 2223344789999999999988888765
No 120
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=7.8e-05 Score=71.42 Aligned_cols=92 Identities=21% Similarity=0.253 Sum_probs=61.8
Q ss_pred cccchhhhHHHHHHHhhc------------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHH
Q 038882 158 RIIGQESIFDDVWRCIIE------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEK 225 (347)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 225 (347)
++=|.+..+.+|.+++.. ...+=|.++|++|+|||.||+.+++.. .-.| +.++..
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel---~vPf-----~~isAp----- 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL---GVPF-----LSISAP----- 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc---CCce-----Eeecch-----
Confidence 456888888888887653 145778899999999999999999987 3233 333322
Q ss_pred HHHHHHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 038882 226 VQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEP 272 (347)
Q Consensus 226 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~ 272 (347)
+|+..+. ..++..+...+.+.-..-++++++|+++..
T Consensus 258 ---eivSGvS-------GESEkkiRelF~~A~~~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 258 ---EIVSGVS-------GESEKKIRELFDQAKSNAPCIVFIDEIDAI 294 (802)
T ss_pred ---hhhcccC-------cccHHHHHHHHHHHhccCCeEEEeeccccc
Confidence 2333322 233444444455555668999999999764
No 121
>CHL00176 ftsH cell division protein; Validated
Probab=98.02 E-value=7.2e-05 Score=74.32 Aligned_cols=164 Identities=13% Similarity=0.145 Sum_probs=91.7
Q ss_pred CcccchhhhHHHHHH---Hhhcc---------CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChH
Q 038882 157 PRIIGQESIFDDVWR---CIIEE---------QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLE 224 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~---~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 224 (347)
.++.|.++..+.+.+ .+... ..+-+.++|++|+|||+||+.+++.. ..+ ++.++. .
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p-----~i~is~----s 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVP-----FFSISG----S 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC-----eeeccH----H
Confidence 456787765555444 33332 23468999999999999999998865 222 222221 1
Q ss_pred HHHHHHHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCcc------------c----ccccccCCC--CCC
Q 038882 225 KVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPV------------D----LTKVGVPIP--NST 286 (347)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------~----~~~l~~~l~--~~~ 286 (347)
++.. ... ..........+.......+++|+|||++... . +..++..+. ...
T Consensus 251 ~f~~----~~~-------g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 251 EFVE----MFV-------GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred HHHH----Hhh-------hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 1111 000 0111223333444456788999999996431 0 112221111 123
Q ss_pred CCcEEEEecCChhHHhh--c---CCCceeecCCCCHHHHHHHHhhhhC------hhhHHHHHHHhCCc
Q 038882 287 NASKVLFTTRYKEVCGK--M---EAHKKLRVECLTADEAWMLFNVKVG------EDTIDKIFVKCCCH 343 (347)
Q Consensus 287 ~gs~iiiTtR~~~v~~~--~---~~~~~~~l~~L~~~ea~~Lf~~~~~------~~~~~~I~~~~~G~ 343 (347)
.+..||.||...+.... . .-...+.++..+.++-.++++..+. +.....+++.+.|.
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGF 387 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCC
Confidence 45567777766543221 1 1235778888898988888887653 23456677776663
No 122
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.0001 Score=66.38 Aligned_cols=162 Identities=13% Similarity=0.188 Sum_probs=96.4
Q ss_pred cccchhhhHHHHHHHhhc-------------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChH
Q 038882 158 RIIGQESIFDDVWRCIIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLE 224 (347)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 224 (347)
.+=|-++.+++|.+...- ++.+=|.+||++|.|||-||++|+++. ...| +.+..+
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~AtF-----IrvvgS---- 219 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DATF-----IRVVGS---- 219 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CceE-----EEeccH----
Confidence 345788888888877543 256778899999999999999999976 3333 333221
Q ss_pred HHHHHHHHhcCCCCccccccChHHHHHHHHHHhc-CCcEEEEEeCCCCcc----------------cccccccCCC--CC
Q 038882 225 KVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILS-NKKFVLLLDDVWEPV----------------DLTKVGVPIP--NS 285 (347)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~----------------~~~~l~~~l~--~~ 285 (347)
++.+..-. ....+...+.+..+ ..+++|.+|.++... ..-+++..+. +.
T Consensus 220 ----ElVqKYiG--------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 220 ----ELVQKYIG--------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred ----HHHHHHhc--------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 22222211 11234555555554 468999999996530 0112222221 12
Q ss_pred CCCcEEEEecCChhHHhh--cCC---CceeecCCCCHHHHHHHHhhhhC------hhhHHHHHHHhCCc
Q 038882 286 TNASKVLFTTRYKEVCGK--MEA---HKKLRVECLTADEAWMLFNVKVG------EDTIDKIFVKCCCH 343 (347)
Q Consensus 286 ~~gs~iiiTtR~~~v~~~--~~~---~~~~~l~~L~~~ea~~Lf~~~~~------~~~~~~I~~~~~G~ 343 (347)
..+-|||..|...++... +.+ ...++.+.-+.+.-.++|+-+.. +-..+.|++.|.|.
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~ 356 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGF 356 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCC
Confidence 346799998887765322 222 34677775455555566654432 33467777777764
No 123
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.01 E-value=0.00016 Score=63.28 Aligned_cols=157 Identities=20% Similarity=0.230 Sum_probs=92.8
Q ss_pred CcccchhhhHHHHHHHhhc-----cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHH
Q 038882 157 PRIIGQESIFDDVWRCIIE-----EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIG 231 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 231 (347)
..|+|.++-.++|.=.+.. ...-.+.++|++|.||||||..+++.. ..++. ++-+....-..-+..|+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em---gvn~k----~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL---GVNLK----ITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh---cCCeE----ecccccccChhhHHHHH
Confidence 4689999888887666544 356789999999999999999999987 22221 11111111111112222
Q ss_pred HhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCcc---------cccccccC-CCCCCCCc-----------E
Q 038882 232 KKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPV---------DLTKVGVP-IPNSTNAS-----------K 290 (347)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---------~~~~l~~~-l~~~~~gs-----------~ 290 (347)
..+. +.=+|.+|.+.... ..+++... ....++++ -
T Consensus 99 t~Le------------------------~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 99 TNLE------------------------EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred hcCC------------------------cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 2221 22345556664321 11111000 01112222 3
Q ss_pred EEEecCChhHHhhcCC--CceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 291 VLFTTRYKEVCGKMEA--HKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 291 iiiTtR~~~v~~~~~~--~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
|=-|||...+...+.. .-+.+++..+.+|-.+...+.+ .++.+.+|++...|-|
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTP 217 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTP 217 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCc
Confidence 3458887665444332 2367899999999999998875 3678999999999988
No 124
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.99 E-value=0.00017 Score=65.62 Aligned_cols=169 Identities=11% Similarity=0.077 Sum_probs=95.6
Q ss_pred hhHHHHHHHhhccCce-EEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCC----
Q 038882 164 SIFDDVWRCIIEEQVG-IIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFS---- 238 (347)
Q Consensus 164 ~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---- 238 (347)
...+.+...+..+... .+.++|+.|+||+++|..++.... -.....+. .+ ...+.+ ..-..++
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~Ll-C~~~~~~~-------~c---~~c~~~-~~g~HPD~~~i 78 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVL-ASGPDPAA-------AQ---RTRQLI-AAGTHPDLQLV 78 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHh-CCCCCCCC-------cc---hHHHHH-hcCCCCCEEEE
Confidence 3456677777666544 588999999999999999988762 11111100 00 001111 1111000
Q ss_pred -----ccc----cccChHHHHHHHHHHh-----cCCcEEEEEeCCCCcc--cccccccCCCCCCCCcEEEEecCChh-HH
Q 038882 239 -----ESW----KNKSLVEKSCAIFKIL-----SNKKFVLLLDDVWEPV--DLTKVGVPIPNSTNASKVLFTTRYKE-VC 301 (347)
Q Consensus 239 -----~~~----~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTtR~~~-v~ 301 (347)
... .....++ +..+.+.+ .+++-++|+|+++... .-..++..+-.-..++.+|++|.+.. +.
T Consensus 79 ~~~p~~~~~k~~~~I~idq-IR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lL 157 (319)
T PRK08769 79 SFIPNRTGDKLRTEIVIEQ-VREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLP 157 (319)
T ss_pred ecCCCcccccccccccHHH-HHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCc
Confidence 000 0011222 22333333 2456799999997752 33444444444455777777776543 33
Q ss_pred hhcC-CCceeecCCCCHHHHHHHHhhh-hChhhHHHHHHHhCCccc
Q 038882 302 GKME-AHKKLRVECLTADEAWMLFNVK-VGEDTIDKIFVKCCCHTF 345 (347)
Q Consensus 302 ~~~~-~~~~~~l~~L~~~ea~~Lf~~~-~~~~~~~~I~~~~~G~PL 345 (347)
..+. ....+.+.+++.+++.+.+.+. ...+.+..++..++|.|+
T Consensus 158 pTIrSRCq~i~~~~~~~~~~~~~L~~~~~~~~~a~~~~~l~~G~p~ 203 (319)
T PRK08769 158 ATIRSRCQRLEFKLPPAHEALAWLLAQGVSERAAQEALDAARGHPG 203 (319)
T ss_pred hHHHhhheEeeCCCcCHHHHHHHHHHcCCChHHHHHHHHHcCCCHH
Confidence 2222 2247899999999999888765 234446688999999996
No 125
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.96 E-value=0.00056 Score=69.81 Aligned_cols=158 Identities=15% Similarity=0.173 Sum_probs=86.8
Q ss_pred CCcccchhhhHHHHHHHhhc------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHH
Q 038882 156 EPRIIGQESIFDDVWRCIIE------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQED 229 (347)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 229 (347)
+...+|.++..+.|+++|.. ....++.++|++|+||||+++.++... ...| +-++.+...+...+...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l---~~~~---~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT---GRKY---VRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCE---EEEEcCCCCCHHHhccc
Confidence 45679999999999988763 245689999999999999999999865 2333 12333333333222111
Q ss_pred HHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCccc-c-----cccccCC---------------CCCCCC
Q 038882 230 IGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPVD-L-----TKVGVPI---------------PNSTNA 288 (347)
Q Consensus 230 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-~-----~~l~~~l---------------~~~~~g 288 (347)
-.... ........+.+... ...+-+++||+++.... . ..+...+ +..-.+
T Consensus 395 ~~~~~--------g~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 395 RRTYI--------GSMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred hhccC--------CCCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCc
Confidence 10001 11112223333322 22344788999965421 1 1111111 111133
Q ss_pred cEEEEecCChhHHhh-cCCCceeecCCCCHHHHHHHHhhhh
Q 038882 289 SKVLFTTRYKEVCGK-MEAHKKLRVECLTADEAWMLFNVKV 328 (347)
Q Consensus 289 s~iiiTtR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~ 328 (347)
..+|.|+.+..+... ++....+.+.+++.++-.++.++.+
T Consensus 466 v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 466 VMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred eEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 444555544332211 1223578999999999988887765
No 126
>PRK10536 hypothetical protein; Provisional
Probab=97.95 E-value=2.5e-05 Score=68.16 Aligned_cols=55 Identities=20% Similarity=0.219 Sum_probs=41.2
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEE
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIW 214 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~w 214 (347)
..+.+|......++.++.+. ..+.+.|+.|+|||+||..+..+. -....|+..+.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~-l~~~~~~kIiI 109 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEA-LIHKDVDRIIV 109 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHH-HhcCCeeEEEE
Confidence 34577888888898988764 599999999999999999988864 11234554443
No 127
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.94 E-value=0.00025 Score=65.90 Aligned_cols=157 Identities=11% Similarity=0.185 Sum_probs=99.0
Q ss_pred hhhhHHHHHHHhhccCceEEEEEeCCCCchHHHH-HHHHHhhhccCCCCCEEEEEEecC---CCChHHHHHHHHHhcCCC
Q 038882 162 QESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLL-KQLNNKLCHERHDFDIVIWVVVSK---DLNLEKVQEDIGKKIDLF 237 (347)
Q Consensus 162 R~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~~f~~~~wv~vs~---~~~~~~~~~~i~~~l~~~ 237 (347)
|.+..++|..||....-..|.|.||-|+||+.|+ .++..+. ..+..+.|.+ ..+-..+++.++.++|+.
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r-------~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR-------KNVLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC-------CCEEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 5678899999999988899999999999999999 7666543 1266776644 234566677777777642
Q ss_pred Cc-----------------------cccccChHHHHHH-------HHH-------------------Hhc---CCcEEEE
Q 038882 238 SE-----------------------SWKNKSLVEKSCA-------IFK-------------------ILS---NKKFVLL 265 (347)
Q Consensus 238 ~~-----------------------~~~~~~~~~~~~~-------l~~-------------------~l~---~kr~LlV 265 (347)
+- ........++... |+. +|+ .++=+||
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 10 0011111122111 111 011 1256899
Q ss_pred EeCCCCc-----------ccccccccCCCCCCCCcEEEEecCChhHHh----hcC--CCceeecCCCCHHHHHHHHhhhh
Q 038882 266 LDDVWEP-----------VDLTKVGVPIPNSTNASKVLFTTRYKEVCG----KME--AHKKLRVECLTADEAWMLFNVKV 328 (347)
Q Consensus 266 lDdv~~~-----------~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~----~~~--~~~~~~l~~L~~~ea~~Lf~~~~ 328 (347)
+||.... .+|... +- .++-.+||++|-+..... .+. ..+.+.|...+.+.|..+..+++
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~---Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L 229 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAAS---LV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQL 229 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHH---HH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHh
Confidence 9998543 123322 22 234567888887755433 222 23578999999999999999887
Q ss_pred C
Q 038882 329 G 329 (347)
Q Consensus 329 ~ 329 (347)
.
T Consensus 230 ~ 230 (431)
T PF10443_consen 230 D 230 (431)
T ss_pred c
Confidence 4
No 128
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.93 E-value=0.00031 Score=60.64 Aligned_cols=168 Identities=18% Similarity=0.200 Sum_probs=97.9
Q ss_pred ccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEe-cCCCChHHHHHHHHHhcCCCCccccccChHHHHHHH
Q 038882 175 EEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVV-SKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAI 253 (347)
Q Consensus 175 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v-s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 253 (347)
.++.+++.++|.-|.|||.+.+...... . -+.++-+.+ .+..+...+...++..+.......-..-..+....|
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~---~--~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L 122 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASL---N--EDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDREL 122 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc---C--CCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHH
Confidence 3456799999999999999999665544 1 122222333 345678888888888887622111111233344445
Q ss_pred HHHh-cCCc-EEEEEeCCCCc--ccccccccC---CCCCCCCcEEEEecCC--------hhHHhhcCCCce-eecCCCCH
Q 038882 254 FKIL-SNKK-FVLLLDDVWEP--VDLTKVGVP---IPNSTNASKVLFTTRY--------KEVCGKMEAHKK-LRVECLTA 317 (347)
Q Consensus 254 ~~~l-~~kr-~LlVlDdv~~~--~~~~~l~~~---l~~~~~gs~iiiTtR~--------~~v~~~~~~~~~-~~l~~L~~ 317 (347)
.... ++++ ..+++||.... ...+.++.. -.+...--+|++.-.. ......-..... |+++|++.
T Consensus 123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~ 202 (269)
T COG3267 123 AALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTE 202 (269)
T ss_pred HHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcCh
Confidence 5544 4566 89999998553 222222111 1111111223332221 111111111124 89999999
Q ss_pred HHHHHHHhhhhC----------hhhHHHHHHHhCCcccCC
Q 038882 318 DEAWMLFNVKVG----------EDTIDKIFVKCCCHTFVI 347 (347)
Q Consensus 318 ~ea~~Lf~~~~~----------~~~~~~I~~~~~G~PLAi 347 (347)
++...++..++. ++....|..+..|.|.+|
T Consensus 203 ~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~li 242 (269)
T COG3267 203 AETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLI 242 (269)
T ss_pred HHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHH
Confidence 999999988752 567888999999999764
No 129
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.92 E-value=5.8e-05 Score=72.35 Aligned_cols=178 Identities=15% Similarity=0.189 Sum_probs=108.8
Q ss_pred CcccchhhhHHHHHHHhhccC-ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHh--
Q 038882 157 PRIIGQESIFDDVWRCIIEEQ-VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKK-- 233 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~-- 233 (347)
++++|-+.-...|.+.+..+. ..-....|+.|+||||+|+.++... --.. + ....++..-..++.|...
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~Akal-NC~~------~-~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKAL-NCEN------G-PTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHh-cCCC------C-CCCCcchhhhhhHhhhcCCc
Confidence 457999999999999998864 3355678999999999999998876 1111 0 112223333333444332
Q ss_pred cCCCC-ccccccChHHHHHHHHHHh-----cCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCChh-HH-hh
Q 038882 234 IDLFS-ESWKNKSLVEKSCAIFKIL-----SNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRYKE-VC-GK 303 (347)
Q Consensus 234 l~~~~-~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~~-v~-~~ 303 (347)
+..-. +.......++. +.|.+.. +++.=+.|+|+|... ..|..++..+-........|+.|.+.. +. ..
T Consensus 88 ~DviEiDaASn~gVddi-R~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TI 166 (515)
T COG2812 88 IDVIEIDAASNTGVDDI-REIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTI 166 (515)
T ss_pred ccchhhhhhhccChHHH-HHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhh
Confidence 10000 00011122222 2233322 346669999999664 567777766655556666666666543 32 22
Q ss_pred cCCCceeecCCCCHHHHHHHHhhhhC-------hhhHHHHHHHhCCc
Q 038882 304 MEAHKKLRVECLTADEAWMLFNVKVG-------EDTIDKIFVKCCCH 343 (347)
Q Consensus 304 ~~~~~~~~l~~L~~~ea~~Lf~~~~~-------~~~~~~I~~~~~G~ 343 (347)
+.....|.+..|+.++-...+...+. ++.+..|.+...|.
T Consensus 167 lSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs 213 (515)
T COG2812 167 LSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGS 213 (515)
T ss_pred hhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCC
Confidence 23335899999999999998887763 45677777777774
No 130
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.91 E-value=5.6e-05 Score=65.21 Aligned_cols=46 Identities=28% Similarity=0.377 Sum_probs=39.0
Q ss_pred CcccchhhhHHHHHHHhhc----cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 157 PRIIGQESIFDDVWRCIIE----EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+.++|.+...+.|++.... .+..-+.+||..|+|||+|++.+.+.+
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 6789999999888876543 356778899999999999999999987
No 131
>PRK08118 topology modulation protein; Reviewed
Probab=97.91 E-value=2.9e-05 Score=64.14 Aligned_cols=36 Identities=44% Similarity=0.711 Sum_probs=28.4
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEE
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIW 214 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~w 214 (347)
..|.|+|++|+||||||+.+++...-...+|+..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999987222356777775
No 132
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.90 E-value=0.0004 Score=63.22 Aligned_cols=170 Identities=8% Similarity=0.021 Sum_probs=98.2
Q ss_pred hHHHHHHHhhccC-ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCC------
Q 038882 165 IFDDVWRCIIEEQ-VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLF------ 237 (347)
Q Consensus 165 ~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~------ 237 (347)
..+.+.+.+..+. ...+.+.|+.|+||+++|..+.....- ...-+ ..+..-...+.+...-...
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC-~~~~~--------~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLC-QNYQS--------EACGFCHSCELMQSGNHPDLHVIKP 81 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcC-CCCCC--------CCCCCCHHHHHHHcCCCCCEEEEec
Confidence 4456666666654 457889999999999999999887621 11100 0111112222222211110
Q ss_pred CccccccChHHHHHHHHHHh-----cCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCChh-HHhhcC-CCc
Q 038882 238 SESWKNKSLVEKSCAIFKIL-----SNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRYKE-VCGKME-AHK 308 (347)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~~-v~~~~~-~~~ 308 (347)
.........++.. .+.+.+ .+++=++|+|+++.. .....++..+-.-..++.+|++|.+.+ +...+. ...
T Consensus 82 ~~~~~~I~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq 160 (319)
T PRK06090 82 EKEGKSITVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQ 160 (319)
T ss_pred CcCCCcCCHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcce
Confidence 0000112233332 333333 245568999999775 345555555555556677777766653 332222 234
Q ss_pred eeecCCCCHHHHHHHHhhhhChhhHHHHHHHhCCccc
Q 038882 309 KLRVECLTADEAWMLFNVKVGEDTIDKIFVKCCCHTF 345 (347)
Q Consensus 309 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~I~~~~~G~PL 345 (347)
.+.+.+++.+++.+.+... +.+....+++.++|.|+
T Consensus 161 ~~~~~~~~~~~~~~~L~~~-~~~~~~~~l~l~~G~p~ 196 (319)
T PRK06090 161 QWVVTPPSTAQAMQWLKGQ-GITVPAYALKLNMGSPL 196 (319)
T ss_pred eEeCCCCCHHHHHHHHHHc-CCchHHHHHHHcCCCHH
Confidence 7899999999999998765 33345678889999986
No 133
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.0019 Score=63.32 Aligned_cols=158 Identities=17% Similarity=0.189 Sum_probs=88.4
Q ss_pred CCcccchhhhHHHHHHHhhc------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHH
Q 038882 156 EPRIIGQESIFDDVWRCIIE------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQED 229 (347)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 229 (347)
+.+-+|.++-.+.|++.+.- -+.+++..+|++|+|||++|+.++.-. ...| +-++++.-.+..+|-
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL---nRkF---fRfSvGG~tDvAeIk-- 481 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL---NRKF---FRFSVGGMTDVAEIK-- 481 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh---CCce---EEEeccccccHHhhc--
Confidence 34559999999999998753 257899999999999999999999877 3333 234555555554442
Q ss_pred HHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCcc------------------cccccccCCCCCCC-CcE
Q 038882 230 IGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPV------------------DLTKVGVPIPNSTN-ASK 290 (347)
Q Consensus 230 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------------~~~~l~~~l~~~~~-gs~ 290 (347)
.+....-..=+..+.+-|.. .+..+-|+.||.|+... +-..+..++.+..- =|+
T Consensus 482 ------GHRRTYVGAMPGkiIq~LK~-v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSk 554 (906)
T KOG2004|consen 482 ------GHRRTYVGAMPGKIIQCLKK-VKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSK 554 (906)
T ss_pred ------ccceeeeccCChHHHHHHHh-hCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhh
Confidence 11111111112222333322 23466788899986531 11112222221111 255
Q ss_pred EEE-ecCCh-h-H-HhhcCCCceeecCCCCHHHHHHHHhhhh
Q 038882 291 VLF-TTRYK-E-V-CGKMEAHKKLRVECLTADEAWMLFNVKV 328 (347)
Q Consensus 291 iii-TtR~~-~-v-~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 328 (347)
|++ .|-+. + + .........|+|.+...+|-..+-.+++
T Consensus 555 VLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 555 VLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred eEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 544 33321 1 0 1111223578888888888777666554
No 134
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.89 E-value=0.00011 Score=60.31 Aligned_cols=146 Identities=15% Similarity=0.122 Sum_probs=74.7
Q ss_pred chhhhHHHHHHHhhccCce-EEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCC--
Q 038882 161 GQESIFDDVWRCIIEEQVG-IIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLF-- 237 (347)
Q Consensus 161 GR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~-- 237 (347)
|-++..+.|.+.+..+..+ .+.++|+.|+||+++|..++... -....... .+......+.+...-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~l-l~~~~~~~--------~c~~c~~c~~~~~~~~~d~~ 71 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARAL-LCSNPNED--------PCGECRSCRRIEEGNHPDFI 71 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHH-C-TT-CTT----------SSSHHHHHHHTT-CTTEE
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHH-cCCCCCCC--------CCCCCHHHHHHHhccCcceE
Confidence 5566778888888777655 57999999999999999998876 22111111 001111122221111100
Q ss_pred ----CccccccChHHHHHHHHHHh-----cCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCChhH-Hhhc-
Q 038882 238 ----SESWKNKSLVEKSCAIFKIL-----SNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRYKEV-CGKM- 304 (347)
Q Consensus 238 ----~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~~v-~~~~- 304 (347)
.........++.. .+.+.+ .+++=++|+||++.. .....++..+-....++.+|++|.+..- ...+
T Consensus 72 ~~~~~~~~~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~ 150 (162)
T PF13177_consen 72 IIKPDKKKKSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIR 150 (162)
T ss_dssp EEETTTSSSSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHH
T ss_pred EEecccccchhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHH
Confidence 0000011222222 333333 235679999999775 4455565555555678899998887652 2222
Q ss_pred CCCceeecCCCC
Q 038882 305 EAHKKLRVECLT 316 (347)
Q Consensus 305 ~~~~~~~l~~L~ 316 (347)
.....+.+.+||
T Consensus 151 SRc~~i~~~~ls 162 (162)
T PF13177_consen 151 SRCQVIRFRPLS 162 (162)
T ss_dssp TTSEEEEE----
T ss_pred hhceEEecCCCC
Confidence 222356776664
No 135
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.86 E-value=0.00057 Score=62.38 Aligned_cols=172 Identities=6% Similarity=-0.002 Sum_probs=99.0
Q ss_pred hHHHHHHHhhccC-ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCC-----C
Q 038882 165 IFDDVWRCIIEEQ-VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLF-----S 238 (347)
Q Consensus 165 ~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~-----~ 238 (347)
..+.|.+.+..+. ...+.+.|+.|+||+++|+.++.... -..... ...+..-...+.+...-... .
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~ll-C~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLM-CQTPQG-------DQPCGQCHSCHLFQAGNHPDFHILEP 81 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHc-CCCCCC-------CCCCCCCHHHHHHhcCCCCCEEEEcc
Confidence 4456667776654 35677999999999999999988762 111110 01122222233332211110 0
Q ss_pred ccccccChHHHHHHHHHHh-----cCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCChh-HHhhcC-CCce
Q 038882 239 ESWKNKSLVEKSCAIFKIL-----SNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRYKE-VCGKME-AHKK 309 (347)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~~-v~~~~~-~~~~ 309 (347)
........++.. .+.+.+ .+++-++|+|+++.. .....++..+-....++.+|++|.+.. +...+. ....
T Consensus 82 ~~~~~I~id~iR-~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~ 160 (325)
T PRK06871 82 IDNKDIGVDQVR-EINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQT 160 (325)
T ss_pred ccCCCCCHHHHH-HHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceE
Confidence 000112233332 333333 256678899999775 345555555555556777777777653 332222 2357
Q ss_pred eecCCCCHHHHHHHHhhhhCh--hhHHHHHHHhCCccc
Q 038882 310 LRVECLTADEAWMLFNVKVGE--DTIDKIFVKCCCHTF 345 (347)
Q Consensus 310 ~~l~~L~~~ea~~Lf~~~~~~--~~~~~I~~~~~G~PL 345 (347)
+.+.+++.++..+.+.+..+. ..+...+..++|.|+
T Consensus 161 ~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQSSAEISEILTALRINYGRPL 198 (325)
T ss_pred EeCCCCCHHHHHHHHHHHhccChHHHHHHHHHcCCCHH
Confidence 899999999999988876432 235566778888885
No 136
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.85 E-value=0.00046 Score=61.43 Aligned_cols=152 Identities=15% Similarity=0.161 Sum_probs=76.6
Q ss_pred hHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHH------------HH
Q 038882 165 IFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDI------------GK 232 (347)
Q Consensus 165 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i------------~~ 232 (347)
-++.+..++..+ ..+.+.|++|+|||+||+.++... .. ....++++...+..+++-.. ..
T Consensus 10 l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l---g~---~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~ 81 (262)
T TIGR02640 10 VTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR---DR---PVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIH 81 (262)
T ss_pred HHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh---CC---CEEEEeCCccCCHHHHhhhhcccchhhHHHHHHH
Confidence 344455555443 466799999999999999998743 22 23455555555444443211 10
Q ss_pred hcCCCCccc-cccChHHHHHHHHHHhcCCcEEEEEeCCCCc--cccccccc-------CCCC---------CCCCcEEEE
Q 038882 233 KIDLFSESW-KNKSLVEKSCAIFKILSNKKFVLLLDDVWEP--VDLTKVGV-------PIPN---------STNASKVLF 293 (347)
Q Consensus 233 ~l~~~~~~~-~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~-------~l~~---------~~~gs~iii 293 (347)
......... ..... ..+....+ +...|++|++... +.+..+.. .++. ..++.+||+
T Consensus 82 ~~~~~~~~~~~~~~~----g~l~~A~~-~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIa 156 (262)
T TIGR02640 82 NVVKLEDIVRQNWVD----NRLTLAVR-EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIF 156 (262)
T ss_pred HhhhhhcccceeecC----chHHHHHH-cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEE
Confidence 000000000 00000 01111112 3468999999653 11111111 1111 124678999
Q ss_pred ecCChhHH-------hhcCCCceeecCCCCHHHHHHHHhhhhC
Q 038882 294 TTRYKEVC-------GKMEAHKKLRVECLTADEAWMLFNVKVG 329 (347)
Q Consensus 294 TtR~~~v~-------~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 329 (347)
|+...... ........+.+...+.++-.+++.+..+
T Consensus 157 TsN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~~ 199 (262)
T TIGR02640 157 TSNPVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKTD 199 (262)
T ss_pred eeCCccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhhC
Confidence 98854211 0111123567788888888888887653
No 137
>PRK07261 topology modulation protein; Provisional
Probab=97.85 E-value=4.7e-05 Score=63.15 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.7
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.|.|+|++|+||||||+.+....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998765
No 138
>PRK08116 hypothetical protein; Validated
Probab=97.85 E-value=3.1e-05 Score=69.02 Aligned_cols=102 Identities=25% Similarity=0.267 Sum_probs=58.6
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHHhc
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILS 258 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 258 (347)
..+.++|.+|+|||.||..+++.. ... ...+++++ ..+++..+........ ..+ ...+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l-~~~--~~~v~~~~------~~~ll~~i~~~~~~~~----~~~----~~~~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL-IEK--GVPVIFVN------FPQLLNRIKSTYKSSG----KED----ENEIIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH-HHc--CCeEEEEE------HHHHHHHHHHHHhccc----ccc----HHHHHHHhc
Confidence 458899999999999999999987 222 33455654 4455666655443210 111 122334444
Q ss_pred CCcEEEEEeCCCC--cccccc--cccCCCC-CCCCcEEEEecCCh
Q 038882 259 NKKFVLLLDDVWE--PVDLTK--VGVPIPN-STNASKVLFTTRYK 298 (347)
Q Consensus 259 ~kr~LlVlDdv~~--~~~~~~--l~~~l~~-~~~gs~iiiTtR~~ 298 (347)
+-. ||||||+.. ..+|.. +...+.. ...+..+|+||...
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 444 899999943 334432 2111111 12456799999754
No 139
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.81 E-value=8.5e-05 Score=73.44 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=39.4
Q ss_pred CcccchhhhHHHHHHHhhcc-----CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 157 PRIIGQESIFDDVWRCIIEE-----QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~-----~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..++|.++.++.+..++... ...++.|+|++|+||||+++.++...
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999999998763 34579999999999999999998765
No 140
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.81 E-value=0.00019 Score=66.05 Aligned_cols=102 Identities=15% Similarity=0.139 Sum_probs=64.7
Q ss_pred HHHHHHhhc-cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCE-EEEEEecCC-CChHHHHHHHHHhcCCCCccccc
Q 038882 167 DDVWRCIIE-EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDI-VIWVVVSKD-LNLEKVQEDIGKKIDLFSESWKN 243 (347)
Q Consensus 167 ~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~-~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~ 243 (347)
.++++.+.. .....+.|+|.+|+|||||++.+++.. .. ++-+. ++|+.+.+. ..+.++++.+...+.....+...
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i-~~-~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAV-AA-NHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHH-Hh-cCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 346676665 445677999999999999999998876 22 23344 466666654 46788888888776542211111
Q ss_pred ---cChHHHHHHHHHHh--cCCcEEEEEeCCC
Q 038882 244 ---KSLVEKSCAIFKIL--SNKKFVLLLDDVW 270 (347)
Q Consensus 244 ---~~~~~~~~~l~~~l--~~kr~LlVlDdv~ 270 (347)
...........+++ ++++.+||+|++.
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 11111222333333 4799999999984
No 141
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.80 E-value=8.4e-05 Score=64.47 Aligned_cols=36 Identities=39% Similarity=0.536 Sum_probs=30.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEe
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVV 217 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v 217 (347)
-.++|+|..|+|||||+..+.... ...|..+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 467899999999999999998876 678887777654
No 142
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.80 E-value=0.00026 Score=72.29 Aligned_cols=164 Identities=13% Similarity=0.141 Sum_probs=92.2
Q ss_pred CcccchhhhHHHHHHHhhc-------------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCCh
Q 038882 157 PRIIGQESIFDDVWRCIIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNL 223 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 223 (347)
..+.|.+...+.|.+.+.- ...+-+.++|++|+|||+||+.+++.. ..+| +.+..
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---~~~f-----i~v~~---- 520 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---GANF-----IAVRG---- 520 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEeh----
Confidence 3467777777766665431 134558899999999999999999876 3333 22221
Q ss_pred HHHHHHHHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCcc-----c---------ccccccCCCC--CCC
Q 038882 224 EKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPV-----D---------LTKVGVPIPN--STN 287 (347)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----~---------~~~l~~~l~~--~~~ 287 (347)
. +++... ...+...+...+...-+..+++|+||+++... . ...++..+.. ...
T Consensus 521 ~----~l~~~~-------vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~ 589 (733)
T TIGR01243 521 P----EILSKW-------VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELS 589 (733)
T ss_pred H----HHhhcc-------cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCC
Confidence 1 111111 11122222223333334578999999986431 0 1112222221 223
Q ss_pred CcEEEEecCChhHHhh--c---CCCceeecCCCCHHHHHHHHhhhhC------hhhHHHHHHHhCCc
Q 038882 288 ASKVLFTTRYKEVCGK--M---EAHKKLRVECLTADEAWMLFNVKVG------EDTIDKIFVKCCCH 343 (347)
Q Consensus 288 gs~iiiTtR~~~v~~~--~---~~~~~~~l~~L~~~ea~~Lf~~~~~------~~~~~~I~~~~~G~ 343 (347)
+.-||.||...+.... + .....+.++..+.++-.++|+.... ...+..+++.|.|.
T Consensus 590 ~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~ 656 (733)
T TIGR01243 590 NVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGY 656 (733)
T ss_pred CEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCC
Confidence 4456667766553221 1 2345788888899988888875532 23467777777774
No 143
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.79 E-value=0.00012 Score=68.17 Aligned_cols=130 Identities=17% Similarity=0.195 Sum_probs=81.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCC--EEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFD--IVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIF 254 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 254 (347)
....+.|||..|.|||.|++.+.+.. ..... .++++ +.+....+++..+.. .-...++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~---~~~~~~a~v~y~------~se~f~~~~v~a~~~-----------~~~~~Fk 171 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEA---LANGPNARVVYL------TSEDFTNDFVKALRD-----------NEMEKFK 171 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHH---HhhCCCceEEec------cHHHHHHHHHHHHHh-----------hhHHHHH
Confidence 37899999999999999999999987 33333 34443 223334444333321 1233455
Q ss_pred HHhcCCcEEEEEeCCCCccc---cc-ccccCCCC-CCCCcEEEEecCCh---------hHHhhcCCCceeecCCCCHHHH
Q 038882 255 KILSNKKFVLLLDDVWEPVD---LT-KVGVPIPN-STNASKVLFTTRYK---------EVCGKMEAHKKLRVECLTADEA 320 (347)
Q Consensus 255 ~~l~~kr~LlVlDdv~~~~~---~~-~l~~~l~~-~~~gs~iiiTtR~~---------~v~~~~~~~~~~~l~~L~~~ea 320 (347)
+.. .-=++++||++-... |+ .+...|.. ...|-.||+|++.. .+.+.+...-.+.+.+.+.+..
T Consensus 172 ~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r 249 (408)
T COG0593 172 EKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETR 249 (408)
T ss_pred Hhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHH
Confidence 555 334889999965322 22 22222211 12344899999653 3455566667899999999999
Q ss_pred HHHHhhhh
Q 038882 321 WMLFNVKV 328 (347)
Q Consensus 321 ~~Lf~~~~ 328 (347)
...+.+.+
T Consensus 250 ~aiL~kka 257 (408)
T COG0593 250 LAILRKKA 257 (408)
T ss_pred HHHHHHHH
Confidence 99998865
No 144
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=0.00087 Score=61.60 Aligned_cols=86 Identities=7% Similarity=0.081 Sum_probs=57.7
Q ss_pred CCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCChh-HHhhc-CCCceeecCCCCHHHHHHHHhhhhChhhHH
Q 038882 259 NKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRYKE-VCGKM-EAHKKLRVECLTADEAWMLFNVKVGEDTID 334 (347)
Q Consensus 259 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 334 (347)
+++-++|+|+++.. .....++..+-.-..++.+|++|.+.+ +...+ .....+.+.+++.++..+.+... +.+...
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~~~~~ 209 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GVADAD 209 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CCChHH
Confidence 45568899999775 445666555655566777776666543 33222 22357899999999999998775 333344
Q ss_pred HHHHHhCCccc
Q 038882 335 KIFVKCCCHTF 345 (347)
Q Consensus 335 ~I~~~~~G~PL 345 (347)
.++..++|.|+
T Consensus 210 ~~l~~~~Gsp~ 220 (342)
T PRK06964 210 ALLAEAGGAPL 220 (342)
T ss_pred HHHHHcCCCHH
Confidence 56788888885
No 145
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.76 E-value=0.00023 Score=72.67 Aligned_cols=164 Identities=14% Similarity=0.135 Sum_probs=89.7
Q ss_pred CcccchhhhHHHHHHHhhc-------------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCCh
Q 038882 157 PRIIGQESIFDDVWRCIIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNL 223 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 223 (347)
.++.|.++.++.|.+++.. ...+-+.++|++|+|||+||+.+++.. ...| +.++.+
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~---~~~~---i~i~~~----- 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA---GAYF---ISINGP----- 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeE---EEEecH-----
Confidence 3478999998888777632 134578899999999999999998876 2222 222211
Q ss_pred HHHHHHHHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCccc-------------ccccccCCCC-CCCCc
Q 038882 224 EKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPVD-------------LTKVGVPIPN-STNAS 289 (347)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------------~~~l~~~l~~-~~~gs 289 (347)
++ .... .......+...+.......+.+|+||+++.... ...+...+.. ...+.
T Consensus 247 -~i----~~~~-------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 247 -EI----MSKY-------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred -HH----hccc-------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 11 1110 011122233333334456778999999854310 1112221211 12233
Q ss_pred EEEE-ecCChh-HHhhc----CCCceeecCCCCHHHHHHHHhhhhC------hhhHHHHHHHhCCc
Q 038882 290 KVLF-TTRYKE-VCGKM----EAHKKLRVECLTADEAWMLFNVKVG------EDTIDKIFVKCCCH 343 (347)
Q Consensus 290 ~iii-TtR~~~-v~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~------~~~~~~I~~~~~G~ 343 (347)
.+++ ||.... +...+ .-...+.+...+.++-.+++..... +.....+++.+.|.
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~ 380 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGF 380 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCC
Confidence 3444 554433 11111 1124677888888888888875431 23466777777765
No 146
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.75 E-value=0.00038 Score=63.82 Aligned_cols=143 Identities=13% Similarity=0.151 Sum_probs=79.5
Q ss_pred ccchhhhHHHHHHHhhc-cCceE-EEEEeCCCCchHHHHHHHHHhhhccCCC-------------------CCEEEEEEe
Q 038882 159 IIGQESIFDDVWRCIIE-EQVGI-IGLYGAGGVGKTTLLKQLNNKLCHERHD-------------------FDIVIWVVV 217 (347)
Q Consensus 159 ~vGR~~~~~~l~~~L~~-~~~~v-i~I~G~~GiGKTtLa~~v~~~~~~~~~~-------------------f~~~~wv~v 217 (347)
++|-+.....+..+... ++... +.++|++|+||||+|..+.+.. ..... ...+..+..
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKEL-LCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHH-hCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 56777778888888774 34555 9999999999999999999887 21111 112222222
Q ss_pred cCCCC---hHHHHHHHHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCcc--cccccccCCCCCCCCcEEE
Q 038882 218 SKDLN---LEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPV--DLTKVGVPIPNSTNASKVL 292 (347)
Q Consensus 218 s~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~ii 292 (347)
+.... ..+..+++........ ..++.-++++|+++... .-..++..+......+.+|
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~------------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~i 143 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESP------------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFI 143 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCC------------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEE
Confidence 22222 1222222222222100 02567899999997752 2333444444455677888
Q ss_pred EecCChh-HHhhcCC-CceeecCCCCHHHH
Q 038882 293 FTTRYKE-VCGKMEA-HKKLRVECLTADEA 320 (347)
Q Consensus 293 iTtR~~~-v~~~~~~-~~~~~l~~L~~~ea 320 (347)
++|.+.. +...+.+ ...+.+.+.+....
T Consensus 144 l~~n~~~~il~tI~SRc~~i~f~~~~~~~~ 173 (325)
T COG0470 144 LITNDPSKILPTIRSRCQRIRFKPPSRLEA 173 (325)
T ss_pred EEcCChhhccchhhhcceeeecCCchHHHH
Confidence 8887443 2222222 23566666444333
No 147
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.75 E-value=0.00028 Score=68.00 Aligned_cols=164 Identities=14% Similarity=0.079 Sum_probs=87.7
Q ss_pred CcccchhhhHHHHHHHh---hc-------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHH
Q 038882 157 PRIIGQESIFDDVWRCI---IE-------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKV 226 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L---~~-------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 226 (347)
.++-|.+...+.+.+.. .. ...+-|.++|++|+|||.+|+.+++.. ...| +-+..+ .
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~------~- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVG------K- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhH------H-
Confidence 34667665555544321 11 234678899999999999999999876 2222 111111 1
Q ss_pred HHHHHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCccc----c----------cccccCCCCCCCCcEEE
Q 038882 227 QEDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPVD----L----------TKVGVPIPNSTNASKVL 292 (347)
Q Consensus 227 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----~----------~~l~~~l~~~~~gs~ii 292 (347)
+.... ...+...+...+...-...+++|++|+++.... . ..+...+.....+--||
T Consensus 295 ---l~~~~-------vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vI 364 (489)
T CHL00195 295 ---LFGGI-------VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVV 364 (489)
T ss_pred ---hcccc-------cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEE
Confidence 11110 011122222222222235789999999964310 0 01111112223334456
Q ss_pred EecCChhHHh-h----cCCCceeecCCCCHHHHHHHHhhhhC--------hhhHHHHHHHhCCc
Q 038882 293 FTTRYKEVCG-K----MEAHKKLRVECLTADEAWMLFNVKVG--------EDTIDKIFVKCCCH 343 (347)
Q Consensus 293 iTtR~~~v~~-~----~~~~~~~~l~~L~~~ea~~Lf~~~~~--------~~~~~~I~~~~~G~ 343 (347)
.||.+..... . -.-...+.++.-+.++-.++|...+. +.....+++.+.|.
T Consensus 365 aTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~Gf 428 (489)
T CHL00195 365 ATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKF 428 (489)
T ss_pred EecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCC
Confidence 6776554211 1 12245778888888988888886652 22366777777664
No 148
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.00088 Score=63.41 Aligned_cols=125 Identities=25% Similarity=0.289 Sum_probs=78.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKI 256 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 256 (347)
....+.+.|++|+|||+||..++.. ..|..+--++. ++ ....++......+.+.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiSp------e~---------------miG~sEsaKc~~i~k~ 590 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS-----SDFPFVKIISP------ED---------------MIGLSESAKCAHIKKI 590 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeCh------HH---------------ccCccHHHHHHHHHHH
Confidence 4667888999999999999999764 45654433221 11 1122333344444444
Q ss_pred h----cCCcEEEEEeCCCCcccccccccCCCC-------------CCCCcEEE--EecCChhHHhhcCC----CceeecC
Q 038882 257 L----SNKKFVLLLDDVWEPVDLTKVGVPIPN-------------STNASKVL--FTTRYKEVCGKMEA----HKKLRVE 313 (347)
Q Consensus 257 l----~~kr~LlVlDdv~~~~~~~~l~~~l~~-------------~~~gs~ii--iTtR~~~v~~~~~~----~~~~~l~ 313 (347)
+ ++.--.||+||+....+|-.+++.|.+ ..+|-|.+ -||....+...|+- ...|+++
T Consensus 591 F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vp 670 (744)
T KOG0741|consen 591 FEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVP 670 (744)
T ss_pred HHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecC
Confidence 3 556689999999888888777655321 23444544 36666667666653 3478888
Q ss_pred CCCH-HHHHHHHhhh
Q 038882 314 CLTA-DEAWMLFNVK 327 (347)
Q Consensus 314 ~L~~-~ea~~Lf~~~ 327 (347)
.++. ++..+.++..
T Consensus 671 nl~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 671 NLTTGEQLLEVLEEL 685 (744)
T ss_pred ccCchHHHHHHHHHc
Confidence 8887 6666666553
No 149
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=0.00038 Score=64.01 Aligned_cols=172 Identities=8% Similarity=-0.008 Sum_probs=99.1
Q ss_pred hHHHHHHHhhccC-ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCC------
Q 038882 165 IFDDVWRCIIEEQ-VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLF------ 237 (347)
Q Consensus 165 ~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~------ 237 (347)
.-++|.+.+..+. ..-+.+.|+.|+||+++|..++....- ...... ..+..-...+.+...-...
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC-~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMC-QQPQGH-------KSCGHCRGCQLMQAGTHPDYYTLTP 81 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcC-CCCCCC-------CCCCCCHHHHHHHcCCCCCEEEEec
Confidence 4566777777654 457779999999999999998877621 111100 0111112222222111100
Q ss_pred CccccccChHHHHHHHHHHh-----cCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCChh-HHhhc-CCCc
Q 038882 238 SESWKNKSLVEKSCAIFKIL-----SNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRYKE-VCGKM-EAHK 308 (347)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~~-v~~~~-~~~~ 308 (347)
.........++.. .+.+.+ .+++-++|+|+.+.. ..-..++..+-.-..++.+|++|.+.+ +...+ ....
T Consensus 82 ~~~~~~I~idqiR-~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq 160 (334)
T PRK07993 82 EKGKSSLGVDAVR-EVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCR 160 (334)
T ss_pred ccccccCCHHHHH-HHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccc
Confidence 0000112233333 233333 256779999999775 334555555554556777777776654 33222 2224
Q ss_pred eeecCCCCHHHHHHHHhhhh--ChhhHHHHHHHhCCccc
Q 038882 309 KLRVECLTADEAWMLFNVKV--GEDTIDKIFVKCCCHTF 345 (347)
Q Consensus 309 ~~~l~~L~~~ea~~Lf~~~~--~~~~~~~I~~~~~G~PL 345 (347)
.+.+.+++.+++.+.+.+.. ..+.+..++..++|.|.
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~~~~~~~a~~~~~la~G~~~ 199 (334)
T PRK07993 161 LHYLAPPPEQYALTWLSREVTMSQDALLAALRLSAGAPG 199 (334)
T ss_pred cccCCCCCHHHHHHHHHHccCCCHHHHHHHHHHcCCCHH
Confidence 78999999999998886643 34556788899999985
No 150
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.69 E-value=0.00062 Score=69.42 Aligned_cols=159 Identities=18% Similarity=0.171 Sum_probs=87.9
Q ss_pred CCcccchhhhHHHHHHHhhcc---------CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHH
Q 038882 156 EPRIIGQESIFDDVWRCIIEE---------QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKV 226 (347)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 226 (347)
...++|.++.++.+.+.+... ...++.++|++|+|||+||+.++... . ...+.++.++......
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l---~---~~~~~~d~se~~~~~~- 525 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL---G---VHLERFDMSEYMEKHT- 525 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh---c---CCeEEEeCchhhhccc-
Confidence 456789888888888887631 24468899999999999999998865 2 2234444444222111
Q ss_pred HHHHHHhcCCCCccccccChHHHHHHHHHHhcC-CcEEEEEeCCCCc--ccccccccCCCCC-----------CCCcEEE
Q 038882 227 QEDIGKKIDLFSESWKNKSLVEKSCAIFKILSN-KKFVLLLDDVWEP--VDLTKVGVPIPNS-----------TNASKVL 292 (347)
Q Consensus 227 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~--~~~~~l~~~l~~~-----------~~gs~ii 292 (347)
+...++.+.. ....+. ...+.+.++. ...+|+||+++.. ..+..+...+..+ -.++.||
T Consensus 526 ---~~~lig~~~g-yvg~~~---~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii 598 (731)
T TIGR02639 526 ---VSRLIGAPPG-YVGFEQ---GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILI 598 (731)
T ss_pred ---HHHHhcCCCC-Ccccch---hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEE
Confidence 1111222111 111111 1223344443 4469999999764 2222222222111 1345577
Q ss_pred EecCChh--H--------------------HhhcC------CCceeecCCCCHHHHHHHHhhhh
Q 038882 293 FTTRYKE--V--------------------CGKME------AHKKLRVECLTADEAWMLFNVKV 328 (347)
Q Consensus 293 iTtR~~~--v--------------------~~~~~------~~~~~~l~~L~~~ea~~Lf~~~~ 328 (347)
+||.... + ...+. -..++...+|+.++..+++...+
T Consensus 599 ~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L 662 (731)
T TIGR02639 599 MTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFV 662 (731)
T ss_pred ECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHH
Confidence 7774321 0 00011 12478899999999988887654
No 151
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.0028 Score=63.61 Aligned_cols=105 Identities=25% Similarity=0.361 Sum_probs=63.2
Q ss_pred CcccchhhhHHHHHHHhhc---------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHH
Q 038882 157 PRIIGQESIFDDVWRCIIE---------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQ 227 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 227 (347)
..++|.++.+..+.+.+.. .+.++....|+.|+|||.||+.++... -+.-+..+-++.|+...-
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~DMSEy~Ek---- 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRIDMSEYMEK---- 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeechHHHHHH----
Confidence 4679999999999888764 146688889999999999999999877 111123333333332111
Q ss_pred HHHHHhcCCCCccccccChHHHHHHHHHHhcCCcE-EEEEeCCCCc
Q 038882 228 EDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKF-VLLLDDVWEP 272 (347)
Q Consensus 228 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~ 272 (347)
..+.+-+|.+ +..-..+. --.|-+..+.++| +|.||++...
T Consensus 564 HsVSrLIGaP-PGYVGyee---GG~LTEaVRr~PySViLlDEIEKA 605 (786)
T COG0542 564 HSVSRLIGAP-PGYVGYEE---GGQLTEAVRRKPYSVILLDEIEKA 605 (786)
T ss_pred HHHHHHhCCC-CCCceecc---ccchhHhhhcCCCeEEEechhhhc
Confidence 1111222322 11111111 2345566677877 8889999653
No 152
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.64 E-value=0.00032 Score=60.89 Aligned_cols=89 Identities=21% Similarity=0.246 Sum_probs=53.7
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHh-cC---CCCccccccChHH---H
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKK-ID---LFSESWKNKSLVE---K 249 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~-l~---~~~~~~~~~~~~~---~ 249 (347)
...++.|+|.+|+|||+|+.+++... ...-..++|++.. .++...+. ++... +. ..-.-....+..+ .
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~---~~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEA---AKNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSEA 96 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHHH
Confidence 46799999999999999999998766 2334678899887 55544432 33322 00 0000011122222 3
Q ss_pred HHHHHHHhcCCcEEEEEeCCC
Q 038882 250 SCAIFKILSNKKFVLLLDDVW 270 (347)
Q Consensus 250 ~~~l~~~l~~kr~LlVlDdv~ 270 (347)
...+...++.+.-++|+|.+.
T Consensus 97 i~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 97 IRKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHHHhcccEEEEeCcH
Confidence 334444444677899999984
No 153
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.63 E-value=0.00051 Score=71.05 Aligned_cols=47 Identities=36% Similarity=0.519 Sum_probs=38.1
Q ss_pred CCcccchhhhHHHHHHHhhcc---------CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 156 EPRIIGQESIFDDVWRCIIEE---------QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...++|.+..++.+...+... +..++.++|++|+|||+||+.+++..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 356889999988888887531 22578899999999999999998765
No 154
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.61 E-value=0.00033 Score=72.59 Aligned_cols=47 Identities=34% Similarity=0.516 Sum_probs=39.3
Q ss_pred CCcccchhhhHHHHHHHhhcc---------CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 156 EPRIIGQESIFDDVWRCIIEE---------QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...++|.+..++.+...+... ...++.++|++|+|||++|+.+....
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l 619 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL 619 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 356899999999999888652 24578899999999999999999876
No 155
>PRK04296 thymidine kinase; Provisional
Probab=97.61 E-value=8.2e-05 Score=62.82 Aligned_cols=112 Identities=16% Similarity=0.034 Sum_probs=62.4
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHHhc
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILS 258 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 258 (347)
.++.|+|++|.||||++..++.+. . .+-..++.+. ..++.......++.+++..-.........+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~-~--~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY-E--ERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH-H--HcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 578899999999999999998876 2 2223333332 1112222233455555532221112334444555544 33
Q ss_pred CCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCCh
Q 038882 259 NKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRYK 298 (347)
Q Consensus 259 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~ 298 (347)
++.-+||+|.+.-. ++..++...+ ...|..||+|.++.
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~ 116 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDT 116 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCc
Confidence 35568999999442 1122222221 34678899999984
No 156
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.60 E-value=0.00022 Score=73.55 Aligned_cols=47 Identities=32% Similarity=0.479 Sum_probs=39.0
Q ss_pred CCcccchhhhHHHHHHHhhc-------c--CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 156 EPRIIGQESIFDDVWRCIIE-------E--QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...++|.+..++.+.+.+.. + ...++.++|++|+|||.||+.+....
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999888743 1 34578999999999999999998776
No 157
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.60 E-value=0.00082 Score=58.16 Aligned_cols=163 Identities=13% Similarity=0.210 Sum_probs=94.1
Q ss_pred CcccchhhhHH---HHHHHhhcc------CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHH
Q 038882 157 PRIIGQESIFD---DVWRCIIEE------QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQ 227 (347)
Q Consensus 157 ~~~vGR~~~~~---~l~~~L~~~------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 227 (347)
++++|.++... -|++.|.++ ..+-|..+|++|.|||.+|+.+++.. +-.| +.+. ..++
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~-----l~vk----at~l- 187 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPL-----LLVK----ATEL- 187 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCce-----EEec----hHHH-
Confidence 45788876543 356666663 57889999999999999999999876 2222 1111 1111
Q ss_pred HHHHHhcCCCCccccccChHHHHHHHHHHh-cCCcEEEEEeCCCCc----------ccc----cccccCCC--CCCCCcE
Q 038882 228 EDIGKKIDLFSESWKNKSLVEKSCAIFKIL-SNKKFVLLLDDVWEP----------VDL----TKVGVPIP--NSTNASK 290 (347)
Q Consensus 228 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~----------~~~----~~l~~~l~--~~~~gs~ 290 (347)
|...+| +....+..+.+.. +.-+|++.+|.++.. .+. ..++.-+. ..+.|-.
T Consensus 188 --iGehVG---------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 188 --IGEHVG---------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred --HHHHhh---------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 111111 1223344444443 347899999998653 111 22222222 2345666
Q ss_pred EEEecCChhHHhhc---CCCceeecCCCCHHHHHHHHhhhhC------hhhHHHHHHHhCCc
Q 038882 291 VLFTTRYKEVCGKM---EAHKKLRVECLTADEAWMLFNVKVG------EDTIDKIFVKCCCH 343 (347)
Q Consensus 291 iiiTtR~~~v~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~------~~~~~~I~~~~~G~ 343 (347)
.|-.|.+.+..... ....-|+...-+++|-.+++..++. +...+.++++++|+
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~ 318 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGM 318 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCC
Confidence 66677666543221 1123456666678888888887762 33466677777764
No 158
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.58 E-value=0.00032 Score=60.15 Aligned_cols=90 Identities=16% Similarity=0.189 Sum_probs=55.4
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhc-CCCCc---cccccChH---HH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKI-DLFSE---SWKNKSLV---EK 249 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l-~~~~~---~~~~~~~~---~~ 249 (347)
...++.|+|++|+|||+|+.+++... ......++|++... ++...+.+ ++... ..... -....+.. ..
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~---~~~g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNA---ARQGKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHH
Confidence 46799999999999999999988765 23356889998876 56555443 33321 00000 00111222 23
Q ss_pred HHHHHHHhcC-CcEEEEEeCCCC
Q 038882 250 SCAIFKILSN-KKFVLLLDDVWE 271 (347)
Q Consensus 250 ~~~l~~~l~~-kr~LlVlDdv~~ 271 (347)
...+.+.+.. +.-+||+|.+..
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis~ 108 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFTA 108 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcHH
Confidence 4555555544 567999999853
No 159
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.56 E-value=0.00027 Score=72.89 Aligned_cols=47 Identities=34% Similarity=0.445 Sum_probs=38.4
Q ss_pred CCcccchhhhHHHHHHHhhcc---------CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 156 EPRIIGQESIFDDVWRCIIEE---------QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...++|.+..++.+.+.+... +...+.++|+.|+|||+||+.+++..
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 467899999999998887531 23467799999999999999999876
No 160
>PRK08181 transposase; Validated
Probab=97.55 E-value=0.00014 Score=64.62 Aligned_cols=105 Identities=18% Similarity=0.127 Sum_probs=56.1
Q ss_pred HHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHH
Q 038882 171 RCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKS 250 (347)
Q Consensus 171 ~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 250 (347)
+|+.. ..-+.++|++|+|||.||..+.+.. . .....+.|++ ..+++..+..... ..+...
T Consensus 101 ~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a-~--~~g~~v~f~~------~~~L~~~l~~a~~-------~~~~~~-- 160 (269)
T PRK08181 101 SWLAK--GANLLLFGPPGGGKSHLAAAIGLAL-I--ENGWRVLFTR------TTDLVQKLQVARR-------ELQLES-- 160 (269)
T ss_pred HHHhc--CceEEEEecCCCcHHHHHHHHHHHH-H--HcCCceeeee------HHHHHHHHHHHHh-------CCcHHH--
Confidence 45443 3568999999999999999999876 2 2223445543 3455555533211 111111
Q ss_pred HHHHHHhcCCcEEEEEeCCCCc--ccc-c-ccccCCCCCCCCcEEEEecCCh
Q 038882 251 CAIFKILSNKKFVLLLDDVWEP--VDL-T-KVGVPIPNSTNASKVLFTTRYK 298 (347)
Q Consensus 251 ~~l~~~l~~kr~LlVlDdv~~~--~~~-~-~l~~~l~~~~~gs~iiiTtR~~ 298 (347)
+.+.+. +.=||||||+... ..+ . .+...+.....+..+||||...
T Consensus 161 --~l~~l~-~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 161 --AIAKLD-KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred --HHHHHh-cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 122222 3459999999543 111 1 1212221111123588888764
No 161
>PRK12377 putative replication protein; Provisional
Probab=97.54 E-value=0.0014 Score=57.55 Aligned_cols=74 Identities=26% Similarity=0.240 Sum_probs=45.2
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHHh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKIL 257 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 257 (347)
...+.++|.+|+|||+||..+++.. . .....++++++ .+++..+-..... ..... .+.+.+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l-~--~~g~~v~~i~~------~~l~~~l~~~~~~------~~~~~----~~l~~l 161 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRL-L--AKGRSVIVVTV------PDVMSRLHESYDN------GQSGE----KFLQEL 161 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-H--HcCCCeEEEEH------HHHHHHHHHHHhc------cchHH----HHHHHh
Confidence 4678999999999999999999987 2 22333456544 3455544433221 01111 122222
Q ss_pred cCCcEEEEEeCCCC
Q 038882 258 SNKKFVLLLDDVWE 271 (347)
Q Consensus 258 ~~kr~LlVlDdv~~ 271 (347)
.+-=||||||+..
T Consensus 162 -~~~dLLiIDDlg~ 174 (248)
T PRK12377 162 -CKVDLLVLDEIGI 174 (248)
T ss_pred -cCCCEEEEcCCCC
Confidence 3567999999943
No 162
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.53 E-value=0.0012 Score=57.16 Aligned_cols=91 Identities=16% Similarity=0.164 Sum_probs=57.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCC------CEEEEEEecCCCChHHHHHHHHHhcCCCCc-------cccc
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDF------DIVIWVVVSKDLNLEKVQEDIGKKIDLFSE-------SWKN 243 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f------~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-------~~~~ 243 (347)
...++.|+|.+|+|||+|+..++... .... ..++|++....++...+. ++....+.... -...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~---~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA---QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh---hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 45799999999999999999987664 2222 567899887776665543 33333221100 0112
Q ss_pred cChHHHHHHHHHHhc----CCcEEEEEeCCCC
Q 038882 244 KSLVEKSCAIFKILS----NKKFVLLLDDVWE 271 (347)
Q Consensus 244 ~~~~~~~~~l~~~l~----~kr~LlVlDdv~~ 271 (347)
.+..++...+....+ .+.-|||+|.+..
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 345555555555543 3556999999854
No 163
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.002 Score=62.58 Aligned_cols=144 Identities=16% Similarity=0.132 Sum_probs=78.3
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKI 256 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 256 (347)
..+-|.++|+||+|||++|+.+++.. +-+|= .+... +++... -..++..+...+++.
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAne~---~~nFl-----svkgp--------EL~sk~-------vGeSEr~ir~iF~kA 523 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALANEA---GMNFL-----SVKGP--------ELFSKY-------VGESERAIREVFRKA 523 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhhhh---cCCee-----eccCH--------HHHHHh-------cCchHHHHHHHHHHH
Confidence 56788999999999999999999976 44551 22111 111111 122223333333333
Q ss_pred hcCCcEEEEEeCCCCcc-------------cccccccCCCCCCC--CcEEEEecCChhHH--hhcC---CCceeecCCCC
Q 038882 257 LSNKKFVLLLDDVWEPV-------------DLTKVGVPIPNSTN--ASKVLFTTRYKEVC--GKME---AHKKLRVECLT 316 (347)
Q Consensus 257 l~~kr~LlVlDdv~~~~-------------~~~~l~~~l~~~~~--gs~iiiTtR~~~v~--~~~~---~~~~~~l~~L~ 316 (347)
=+--+++|.||.++... .+..++..+..... +--||-.|..++.. ..+. .+..+.++.-+
T Consensus 524 R~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD 603 (693)
T KOG0730|consen 524 RQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPD 603 (693)
T ss_pred hhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCcc
Confidence 33467999999986531 11222222222222 22233344433331 2233 23466777777
Q ss_pred HHHHHHHHhhhhC-----hh-hHHHHHHHhCCc
Q 038882 317 ADEAWMLFNVKVG-----ED-TIDKIFVKCCCH 343 (347)
Q Consensus 317 ~~ea~~Lf~~~~~-----~~-~~~~I~~~~~G~ 343 (347)
.+.-.++|+.++. ++ .+.+|++++.|.
T Consensus 604 ~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~ 636 (693)
T KOG0730|consen 604 LEARLEILKQCAKKMPFSEDVDLEELAQATEGY 636 (693)
T ss_pred HHHHHHHHHHHHhcCCCCccccHHHHHHHhccC
Confidence 7778889988762 22 467777776664
No 164
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.50 E-value=0.0022 Score=58.83 Aligned_cols=40 Identities=30% Similarity=0.492 Sum_probs=33.0
Q ss_pred hhhHHHHHHHhhc---cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 163 ESIFDDVWRCIIE---EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 163 ~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+...+.|.+.+.+ +...+|+|.|.=|+|||++.+.+.+..
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4455667777765 367899999999999999999999888
No 165
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.49 E-value=0.0001 Score=57.15 Aligned_cols=23 Identities=43% Similarity=0.684 Sum_probs=21.4
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+|.|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999875
No 166
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.49 E-value=0.00022 Score=60.49 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=36.7
Q ss_pred chhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEE
Q 038882 161 GQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVV 216 (347)
Q Consensus 161 GR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 216 (347)
++..+-...++.|. +..++.+.|++|.|||.||....-+. -....|+..+++.
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~R 56 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITR 56 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEe
Confidence 44556666677777 35799999999999999999888766 4458888888774
No 167
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.48 E-value=0.0011 Score=60.77 Aligned_cols=160 Identities=11% Similarity=0.022 Sum_probs=79.5
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCC----Cc------c---cccc
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLF----SE------S---WKNK 244 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~----~~------~---~~~~ 244 (347)
...+.++|+.|+|||++|+.+.....-....-.. ..+..-...+.+...-... .. . ....
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~-------~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I 93 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGH-------KPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQI 93 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCC-------CCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCc
Confidence 4568899999999999999998876210100000 0111111122221111000 00 0 0011
Q ss_pred ChHHHHHHHHHHhc-----CCcEEEEEeCCCCcc--cccccccCCCCCCCCcEEEEecCChh-HHhhcC-CCceeecCCC
Q 038882 245 SLVEKSCAIFKILS-----NKKFVLLLDDVWEPV--DLTKVGVPIPNSTNASKVLFTTRYKE-VCGKME-AHKKLRVECL 315 (347)
Q Consensus 245 ~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTtR~~~-v~~~~~-~~~~~~l~~L 315 (347)
..++... +.+.+. +++-++|+|++...+ .-..+...+.....++.+|++|.+.. +...+. ....+.+.++
T Consensus 94 ~id~iR~-l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~ 172 (325)
T PRK08699 94 KIDAVRE-IIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAP 172 (325)
T ss_pred CHHHHHH-HHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCC
Confidence 2333332 333332 344455668876542 22223222222224566777777654 332222 1247899999
Q ss_pred CHHHHHHHHhhhhChhhHHHHHHHhCCcccC
Q 038882 316 TADEAWMLFNVKVGEDTIDKIFVKCCCHTFV 346 (347)
Q Consensus 316 ~~~ea~~Lf~~~~~~~~~~~I~~~~~G~PLA 346 (347)
+.+++.+.+.+.-... ....+..++|.|+.
T Consensus 173 ~~~~~~~~L~~~~~~~-~~~~l~~~~g~p~~ 202 (325)
T PRK08699 173 SHEEALAYLRERGVAE-PEERLAFHSGAPLF 202 (325)
T ss_pred CHHHHHHHHHhcCCCc-HHHHHHHhCCChhh
Confidence 9999998887652222 22334678888864
No 168
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.48 E-value=0.0006 Score=57.76 Aligned_cols=56 Identities=21% Similarity=0.296 Sum_probs=37.0
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCC-CChHHHHHHHHHhcCC
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKD-LNLEKVQEDIGKKIDL 236 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~ 236 (347)
.+++.++|+.|+||||.+.+++... ..+ -..+..++.... ....+-++..++.++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~-~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~v 57 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL-KLK--GKKVALISADTYRIGAVEQLKTYAEILGV 57 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH-HHT--T--EEEEEESTSSTHHHHHHHHHHHHHTE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH-hhc--cccceeecCCCCCccHHHHHHHHHHHhcc
Confidence 3689999999999999888888777 323 345666665432 2344555666666654
No 169
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.47 E-value=0.0014 Score=56.64 Aligned_cols=90 Identities=14% Similarity=0.093 Sum_probs=52.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhc----CCCCccccccChHHH---
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKI----DLFSESWKNKSLVEK--- 249 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l----~~~~~~~~~~~~~~~--- 249 (347)
...++.|.|.+|+|||||+.+++... ...-..++|++....+. +-+++++... ...-......+..+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~---~~~g~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET---AGQGKKVAYIDTEGLSS--ERFRQIAGDRPERAASSIIVFEPMDFNEQGRA 92 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCCCCH--HHHHHHHhHChHhhhcCEEEEeCCCHHHHHHH
Confidence 46799999999999999999998775 23334677887655443 3333443321 000000111222222
Q ss_pred HHHHHHHhcCCcEEEEEeCCCC
Q 038882 250 SCAIFKILSNKKFVLLLDDVWE 271 (347)
Q Consensus 250 ~~~l~~~l~~kr~LlVlDdv~~ 271 (347)
...+...+..+.-++|+|.+..
T Consensus 93 ~~~~~~~~~~~~~lvvIDsi~~ 114 (218)
T cd01394 93 IQETETFADEKVDLVVVDSATA 114 (218)
T ss_pred HHHHHHHHhcCCcEEEEechHH
Confidence 2344445555577999999843
No 170
>PRK06526 transposase; Provisional
Probab=97.47 E-value=0.00012 Score=64.71 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...-+.++|++|+|||+||..+.+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHH
Confidence 34568999999999999999998876
No 171
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.46 E-value=0.00018 Score=65.91 Aligned_cols=45 Identities=27% Similarity=0.383 Sum_probs=40.3
Q ss_pred cccchhhhHHHHHHHhhc------cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 158 RIIGQESIFDDVWRCIIE------EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.++|.++.++++++++.. ...+++.++|++|+||||||+.+.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999865 245889999999999999999999887
No 172
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.45 E-value=0.0002 Score=59.78 Aligned_cols=75 Identities=24% Similarity=0.375 Sum_probs=42.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKI 256 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 256 (347)
...-+.++|.+|+|||.||..+.+.. .. ..+ .+.|++ ..+++..+-..- ....... +.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~-~~-~g~-~v~f~~------~~~L~~~l~~~~-------~~~~~~~----~~~~ 105 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEA-IR-KGY-SVLFIT------ASDLLDELKQSR-------SDGSYEE----LLKR 105 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHH-HH-TT---EEEEE------HHHHHHHHHCCH-------CCTTHCH----HHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHh-cc-CCc-ceeEee------cCceeccccccc-------cccchhh----hcCc
Confidence 34679999999999999999999877 22 222 345553 345555553211 1111222 2223
Q ss_pred hcCCcEEEEEeCCCCc
Q 038882 257 LSNKKFVLLLDDVWEP 272 (347)
Q Consensus 257 l~~kr~LlVlDdv~~~ 272 (347)
+. +-=||||||+...
T Consensus 106 l~-~~dlLilDDlG~~ 120 (178)
T PF01695_consen 106 LK-RVDLLILDDLGYE 120 (178)
T ss_dssp HH-TSSCEEEETCTSS
T ss_pred cc-cccEeccccccee
Confidence 33 3457889999543
No 173
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.43 E-value=0.00038 Score=59.22 Aligned_cols=46 Identities=26% Similarity=0.323 Sum_probs=41.5
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.++||-++.++.+.-.-.+++.+-+.|.||+|+||||-+..+++..
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 4689999999999888888899999999999999999998888876
No 174
>PRK09183 transposase/IS protein; Provisional
Probab=97.40 E-value=0.00024 Score=62.97 Aligned_cols=25 Identities=40% Similarity=0.424 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+.|+|++|+|||+||..+.+..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999998765
No 175
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.39 E-value=0.00026 Score=60.22 Aligned_cols=110 Identities=13% Similarity=0.170 Sum_probs=60.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChH-HHHHHHHHhcCCCCccccccChHHHHHHHHHHh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLE-KVQEDIGKKIDLFSESWKNKSLVEKSCAIFKIL 257 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 257 (347)
+++.|+|+.|+||||++..+.... ..+....++.- ..+.... .-...+..+-. ...+.......++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~---~~~~~~~i~t~-e~~~E~~~~~~~~~i~q~~------vg~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILTI-EDPIEFVHESKRSLINQRE------VGLDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---hhcCCcEEEEE-cCCccccccCccceeeecc------cCCCccCHHHHHHHHh
Confidence 578999999999999999887765 22333344332 1111100 00001111100 0112233455677777
Q ss_pred cCCcEEEEEeCCCCcccccccccCCCCCCCCcEEEEecCChhHH
Q 038882 258 SNKKFVLLLDDVWEPVDLTKVGVPIPNSTNASKVLFTTRYKEVC 301 (347)
Q Consensus 258 ~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~ 301 (347)
...+=++++|++-+.+........ ...|..++.|+...+..
T Consensus 72 r~~pd~ii~gEird~e~~~~~l~~---a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLALTA---AETGHLVMSTLHTNSAA 112 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHHHH---HHcCCEEEEEecCCcHH
Confidence 777889999999765544433222 22455677777765543
No 176
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0013 Score=64.37 Aligned_cols=146 Identities=21% Similarity=0.109 Sum_probs=82.2
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCC--ChHHHHHHHHHhcCCCCccccccChHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDL--NLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIF 254 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 254 (347)
..+-|.|.|+.|+|||+||+.+++.+ . +...-.+.+++++.-. .++.+.+.+ ...+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~-~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l-------------------~~vfs 488 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYY-S-KDLIAHVEIVSCSTLDGSSLEKIQKFL-------------------NNVFS 488 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHh-c-cccceEEEEEechhccchhHHHHHHHH-------------------HHHHH
Confidence 34678899999999999999999988 3 4455556667665532 122222211 12233
Q ss_pred HHhcCCcEEEEEeCCCCc--------cccccc---ccCCC------CCCCCcE--EEEecCChhHH-----hhcCCCcee
Q 038882 255 KILSNKKFVLLLDDVWEP--------VDLTKV---GVPIP------NSTNASK--VLFTTRYKEVC-----GKMEAHKKL 310 (347)
Q Consensus 255 ~~l~~kr~LlVlDdv~~~--------~~~~~l---~~~l~------~~~~gs~--iiiTtR~~~v~-----~~~~~~~~~ 310 (347)
+.+.-.+-+|||||++.. .+|... ...+. ....+.+ +|.|.....-. ...-.+..+
T Consensus 489 e~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~ 568 (952)
T KOG0735|consen 489 EALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVI 568 (952)
T ss_pred HHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEE
Confidence 445668999999999543 112110 01110 1223333 34444432211 111122366
Q ss_pred ecCCCCHHHHHHHHhhhhC-------hhhHHHHHHHhCCc
Q 038882 311 RVECLTADEAWMLFNVKVG-------EDTIDKIFVKCCCH 343 (347)
Q Consensus 311 ~l~~L~~~ea~~Lf~~~~~-------~~~~~~I~~~~~G~ 343 (347)
.|+.+...+--++++.... .+.+.-+..+|+|.
T Consensus 569 ~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 569 ALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGY 608 (952)
T ss_pred ecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCc
Confidence 8888888777776665442 23455577888875
No 177
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.35 E-value=0.00082 Score=54.61 Aligned_cols=117 Identities=19% Similarity=0.158 Sum_probs=62.5
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEe---cCCCChHHHHHHHHHhcCC---C-CccccccChH----
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVV---SKDLNLEKVQEDIGKKIDL---F-SESWKNKSLV---- 247 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v---s~~~~~~~~~~~i~~~l~~---~-~~~~~~~~~~---- 247 (347)
..|-|++..|.||||+|...+-+. ..+=..+.++.. ........+++.+- .+.. . ...+...+..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra---~~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA---LGHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHH
Confidence 577888889999999998887765 222223334332 22334444444431 1100 0 0000011111
Q ss_pred ---HHHHHHHHHhcC-CcEEEEEeCCCCc-----ccccccccCCCCCCCCcEEEEecCChh
Q 038882 248 ---EKSCAIFKILSN-KKFVLLLDDVWEP-----VDLTKVGVPIPNSTNASKVLFTTRYKE 299 (347)
Q Consensus 248 ---~~~~~l~~~l~~-kr~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~iiiTtR~~~ 299 (347)
+.....++.+.. +-=|||||++-.. .+.+.+...+.....+..+|+|.|+..
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 122333444444 4569999998433 333444444555666789999999864
No 178
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.35 E-value=0.00083 Score=58.63 Aligned_cols=93 Identities=18% Similarity=0.184 Sum_probs=56.2
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCC----CCCEEEEEEecCCCChHHHHHHHHHhcCCCCcc-------ccccC
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERH----DFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSES-------WKNKS 245 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 245 (347)
...++.|+|.+|+|||+|+.+++... .... ....++|++....++...+. ++++..+..... ....+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCC
Confidence 45799999999999999999997543 1111 13688999988776655443 344433321110 01112
Q ss_pred hHH---HHHHHHHHhc-C-CcEEEEEeCCCC
Q 038882 246 LVE---KSCAIFKILS-N-KKFVLLLDDVWE 271 (347)
Q Consensus 246 ~~~---~~~~l~~~l~-~-kr~LlVlDdv~~ 271 (347)
..+ ....+...+. . +.-|||+|.+..
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 222 3344444443 3 678999999954
No 179
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.35 E-value=0.017 Score=55.77 Aligned_cols=25 Identities=40% Similarity=0.704 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+++|+|++|+||||++..+....
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999988765
No 180
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.34 E-value=0.0056 Score=56.11 Aligned_cols=37 Identities=30% Similarity=0.377 Sum_probs=28.2
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEe
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVV 217 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v 217 (347)
...+.++|.+|+|||.||..+++.. ..+ -..++|+++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l-~~~--g~~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKEL-LDR--GKSVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHH-HHC--CCeEEEEEH
Confidence 3779999999999999999999987 222 235566544
No 181
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.34 E-value=0.00069 Score=56.40 Aligned_cols=36 Identities=33% Similarity=0.518 Sum_probs=28.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEE
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWV 215 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv 215 (347)
...+|.+.|++|+||||+|+.++... ...+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 34689999999999999999999887 3345555554
No 182
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.34 E-value=0.0017 Score=52.65 Aligned_cols=39 Identities=31% Similarity=0.485 Sum_probs=30.2
Q ss_pred EEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCC
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDL 221 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~ 221 (347)
++.|+|.+|+|||+++..+.... ...-..++|++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCcch
Confidence 36799999999999999998876 2244567787776554
No 183
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0043 Score=54.86 Aligned_cols=92 Identities=22% Similarity=0.265 Sum_probs=59.7
Q ss_pred CcccchhhhHHHHHHHhhcc------------CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChH
Q 038882 157 PRIIGQESIFDDVWRCIIEE------------QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLE 224 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~------------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 224 (347)
+.+-|-+...+.|.+...-+ ..+-|.++|++|.|||.||+.|+... .. -|.++|..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nS-----TFFSvSSS---- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NS-----TFFSVSSS---- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---CC-----ceEEeehH----
Confidence 56778888888887765321 46789999999999999999998765 12 23344443
Q ss_pred HHHHHHHHhcCCCCccccccChHHHHHHHHHHh-cCCcEEEEEeCCCCc
Q 038882 225 KVQEDIGKKIDLFSESWKNKSLVEKSCAIFKIL-SNKKFVLLLDDVWEP 272 (347)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~ 272 (347)
++...... ..+.+...|.+.. ++++.+|.+|.++..
T Consensus 201 ----DLvSKWmG--------ESEkLVknLFemARe~kPSIIFiDEiDsl 237 (439)
T KOG0739|consen 201 ----DLVSKWMG--------ESEKLVKNLFEMARENKPSIIFIDEIDSL 237 (439)
T ss_pred ----HHHHHHhc--------cHHHHHHHHHHHHHhcCCcEEEeehhhhh
Confidence 11211111 1233445555544 468999999999754
No 184
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.29 E-value=0.00077 Score=61.21 Aligned_cols=116 Identities=22% Similarity=0.259 Sum_probs=65.2
Q ss_pred chhhhHHHHHHHhhc----cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCC
Q 038882 161 GQESIFDDVWRCIIE----EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDL 236 (347)
Q Consensus 161 GR~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 236 (347)
+|........+++.. ....-+.++|..|+|||.||..+++.. . ...+ .+.++++ .+++.++......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l-~-~~g~-~v~~~~~------~~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANEL-A-KKGV-SSTLLHF------PEFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHH-H-HcCC-CEEEEEH------HHHHHHHHHHHhc
Confidence 454444545555543 134678999999999999999999987 2 2233 3445544 3555555544421
Q ss_pred CCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCc--ccccc--cccCC-CCC-CCCcEEEEecCC
Q 038882 237 FSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEP--VDLTK--VGVPI-PNS-TNASKVLFTTRY 297 (347)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~--l~~~l-~~~-~~gs~iiiTtR~ 297 (347)
.+.. ..+ +.+ .+-=||||||+... ..|.. +...+ ... ..+-.+|+||.-
T Consensus 206 -------~~~~---~~l-~~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 206 -------GSVK---EKI-DAV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred -------CcHH---HHH-HHh-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1111 122 222 25568999999543 45542 32222 111 234567888864
No 185
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0021 Score=62.65 Aligned_cols=143 Identities=15% Similarity=0.147 Sum_probs=82.2
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKI 256 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 256 (347)
..+.+.++|++|.|||.||+.+++.. ..+|-.+.+ . +++.. +-..+.......+...
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~-----~--------~l~sk-------~vGesek~ir~~F~~A 331 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKG-----S--------ELLSK-------WVGESEKNIRELFEKA 331 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeC-----H--------HHhcc-------ccchHHHHHHHHHHHH
Confidence 45689999999999999999999865 444432221 1 11111 1122233334444444
Q ss_pred hcCCcEEEEEeCCCCcccc-------------cccccCCC--CCCCCcEEEEecCChhHHhh--c---CCCceeecCCCC
Q 038882 257 LSNKKFVLLLDDVWEPVDL-------------TKVGVPIP--NSTNASKVLFTTRYKEVCGK--M---EAHKKLRVECLT 316 (347)
Q Consensus 257 l~~kr~LlVlDdv~~~~~~-------------~~l~~~l~--~~~~gs~iiiTtR~~~v~~~--~---~~~~~~~l~~L~ 316 (347)
.+..++.|.+|+++....+ ..++..+. ....+..||-||........ . .-...+.+++-+
T Consensus 332 ~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd 411 (494)
T COG0464 332 RKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPD 411 (494)
T ss_pred HcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCC
Confidence 5678999999999654211 11222222 12233345556655443221 1 223478889999
Q ss_pred HHHHHHHHhhhhC--------hhhHHHHHHHhCC
Q 038882 317 ADEAWMLFNVKVG--------EDTIDKIFVKCCC 342 (347)
Q Consensus 317 ~~ea~~Lf~~~~~--------~~~~~~I~~~~~G 342 (347)
.++..+.|+.+.. +-..+.+++.+.|
T Consensus 412 ~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 412 LEERLEIFKIHLRDKKPPLAEDVDLEELAEITEG 445 (494)
T ss_pred HHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcC
Confidence 9999999988764 2234555555544
No 186
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.00055 Score=64.82 Aligned_cols=45 Identities=18% Similarity=0.291 Sum_probs=35.9
Q ss_pred cccchhh---hHHHHHHHhhcc---------CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 158 RIIGQES---IFDDVWRCIIEE---------QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 158 ~~vGR~~---~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
++.|-|+ |++++++.|.++ =.+=|.++|++|.|||-||+.++...
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 4566654 788888888874 14568899999999999999998765
No 187
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.28 E-value=0.00097 Score=55.61 Aligned_cols=127 Identities=20% Similarity=0.183 Sum_probs=65.2
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCcc------------cccc
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSES------------WKNK 244 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~------------~~~~ 244 (347)
...+++|.|..|.|||||++.+.... ......+++.-. ++......+-..++...+. ....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~L 99 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL----KPQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRF 99 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC----CCCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccC
Confidence 45789999999999999999998765 222333433211 1111111111111110000 0111
Q ss_pred C-hHHHHHHHHHHhcCCcEEEEEeCCCCcccc---cccccCCCCCCCCcEEEEecCChhHHhhcCCCceeec
Q 038882 245 S-LVEKSCAIFKILSNKKFVLLLDDVWEPVDL---TKVGVPIPNSTNASKVLFTTRYKEVCGKMEAHKKLRV 312 (347)
Q Consensus 245 ~-~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~---~~l~~~l~~~~~gs~iiiTtR~~~v~~~~~~~~~~~l 312 (347)
+ .+...-.+...+-.++-+++||+..+.-+. +.+...+.....+..||++|.+...... +.+.+.+
T Consensus 100 S~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 1 122333455566678889999998664221 1121111111235678888888776542 3444443
No 188
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.27 E-value=0.0016 Score=57.73 Aligned_cols=92 Identities=20% Similarity=0.352 Sum_probs=56.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCC-CEEEEEEecCCC-ChHHHHHHHHHhcCCCCc----cccccCh----
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDF-DIVIWVVVSKDL-NLEKVQEDIGKKIDLFSE----SWKNKSL---- 246 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f-~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~---- 246 (347)
....++|.|.+|+|||+|++.+++.. ..+| +.++++.+.+.. ...++.+++...-..... ...+.+.
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 45789999999999999999999987 3334 455666676654 355566665543111000 0001111
Q ss_pred --HHHHHHHHHHh--c-CCcEEEEEeCCCC
Q 038882 247 --VEKSCAIFKIL--S-NKKFVLLLDDVWE 271 (347)
Q Consensus 247 --~~~~~~l~~~l--~-~kr~LlVlDdv~~ 271 (347)
......+.+++ + ++..||++||+-.
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 12233455666 3 8899999999843
No 189
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.27 E-value=0.0019 Score=57.11 Aligned_cols=94 Identities=22% Similarity=0.234 Sum_probs=57.4
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhcc---CCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCcc-------ccccCh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHE---RHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSES-------WKNKSL 246 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 246 (347)
...+.=|+|.+|+|||.|+..++-..... ...-..++|++-...++...+. +|++..+...+. ....+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 45688999999999999998876543111 1223478999998889887765 566655432111 011233
Q ss_pred HHHHHH---HHHHh-cCCcEEEEEeCCCC
Q 038882 247 VEKSCA---IFKIL-SNKKFVLLLDDVWE 271 (347)
Q Consensus 247 ~~~~~~---l~~~l-~~kr~LlVlDdv~~ 271 (347)
.++... +...+ .++--|||+|.+-.
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSIaa 144 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSIAA 144 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSH
T ss_pred HHHHHHHHHHHhhccccceEEEEecchHH
Confidence 333333 33333 34567999999843
No 190
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.27 E-value=0.00051 Score=62.90 Aligned_cols=27 Identities=26% Similarity=0.446 Sum_probs=24.6
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.....++|||++|+|||.+|+.+++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 356899999999999999999999987
No 191
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.26 E-value=0.0012 Score=54.92 Aligned_cols=124 Identities=14% Similarity=0.103 Sum_probs=65.6
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhcc--CC---CCC--EEEEEEecCCCChHHHHHHHHHhcCCCCc----cccccC
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHE--RH---DFD--IVIWVVVSKDLNLEKVQEDIGKKIDLFSE----SWKNKS 245 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~---~f~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----~~~~~~ 245 (347)
...+++|+|+.|+|||||.+.+..+...+ .. .|. ...|+ .+ .+.+..++.... .....+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 45799999999999999999886422111 00 111 12232 11 355666654221 111122
Q ss_pred h-HHHHHHHHHHhcCC--cEEEEEeCCCCccc---ccccccCCCC-CCCCcEEEEecCChhHHhhcCCCceeec
Q 038882 246 L-VEKSCAIFKILSNK--KFVLLLDDVWEPVD---LTKVGVPIPN-STNASKVLFTTRYKEVCGKMEAHKKLRV 312 (347)
Q Consensus 246 ~-~~~~~~l~~~l~~k--r~LlVlDdv~~~~~---~~~l~~~l~~-~~~gs~iiiTtR~~~v~~~~~~~~~~~l 312 (347)
. +...-.+...+-.+ +-++++|+.-+.-+ ...+...+.. ...|..||++|.+...... +...+.+
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 2 22233455555566 78899999855422 1222222211 1246778899988876542 4445544
No 192
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.25 E-value=0.00085 Score=68.07 Aligned_cols=46 Identities=30% Similarity=0.419 Sum_probs=38.0
Q ss_pred CcccchhhhHHHHHHHhhc---------cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 157 PRIIGQESIFDDVWRCIIE---------EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..++|.++.++.|.+.+.. .....+.++|++|+|||+||+.++...
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999988888763 134578999999999999999998876
No 193
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.25 E-value=0.004 Score=55.98 Aligned_cols=169 Identities=14% Similarity=0.165 Sum_probs=100.4
Q ss_pred CcccchhhhHHHHHHHhhc----cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCCh-HHHHHHHH
Q 038882 157 PRIIGQESIFDDVWRCIIE----EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNL-EKVQEDIG 231 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~-~~~~~~i~ 231 (347)
..++|-.++-.++-.++.. ++..-+.|+|+.|.|||+|......+.++...+| .-|......-. .-.++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHHH
Confidence 4579999988888888865 4567888999999999999988777642334443 33444433222 22345555
Q ss_pred HhcCCCC--ccccccChHHHHHHHHHHhcC------CcEEEEEeCCCCccc-------ccccccCCCCCCCCcEEEEecC
Q 038882 232 KKIDLFS--ESWKNKSLVEKSCAIFKILSN------KKFVLLLDDVWEPVD-------LTKVGVPIPNSTNASKVLFTTR 296 (347)
Q Consensus 232 ~~l~~~~--~~~~~~~~~~~~~~l~~~l~~------kr~LlVlDdv~~~~~-------~~~l~~~l~~~~~gs~iiiTtR 296 (347)
.|+.... ......+..+....+...|+. -+.++|+|+++--.. +.-+...-....+-|-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 5543211 111223344555566666643 458899988854311 1111111112345567788998
Q ss_pred ChhH-------HhhcCCCceeecCCCCHHHHHHHHhhhh
Q 038882 297 YKEV-------CGKMEAHKKLRVECLTADEAWMLFNVKV 328 (347)
Q Consensus 297 ~~~v-------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 328 (347)
-... -+......++-++.++-++...++++..
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 6532 2333322356678888999999998875
No 194
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.0098 Score=58.98 Aligned_cols=167 Identities=17% Similarity=0.147 Sum_probs=92.4
Q ss_pred CCccccCCCCcccchhhhHHHHHHHhhcc------------CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEE
Q 038882 148 PLIEEMPIEPRIIGQESIFDDVWRCIIEE------------QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWV 215 (347)
Q Consensus 148 ~~~~~~~~~~~~vGR~~~~~~l~~~L~~~------------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv 215 (347)
|.+.| +++=|-++-...|.+-+.-+ +..=|.++|++|.|||-||++|+... .- -|+
T Consensus 667 PnV~W----dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc---sL-----~Fl 734 (953)
T KOG0736|consen 667 PNVSW----DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC---SL-----NFL 734 (953)
T ss_pred Cccch----hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc---ee-----eEE
Confidence 55666 67677888777777665431 35578899999999999999998765 22 233
Q ss_pred EecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCc-----------cccc----cccc
Q 038882 216 VVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEP-----------VDLT----KVGV 280 (347)
Q Consensus 216 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~----~l~~ 280 (347)
+|-.+ ++++.- + ..+++.....+.+.=..++|+|.||++++. ...+ +++.
T Consensus 735 SVKGP----ELLNMY---V--------GqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLA 799 (953)
T KOG0736|consen 735 SVKGP----ELLNMY---V--------GQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLA 799 (953)
T ss_pred eecCH----HHHHHH---h--------cchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHH
Confidence 44332 122111 1 122333333333333458999999999764 1111 1211
Q ss_pred C---CCC-CCCCcEEEEecCChhHHh--hcCC---CceeecCCCCHHHHHHHHhhhh------C-hhhHHHHHHHhC
Q 038882 281 P---IPN-STNASKVLFTTRYKEVCG--KMEA---HKKLRVECLTADEAWMLFNVKV------G-EDTIDKIFVKCC 341 (347)
Q Consensus 281 ~---l~~-~~~gs~iiiTtR~~~v~~--~~~~---~~~~~l~~L~~~ea~~Lf~~~~------~-~~~~~~I~~~~~ 341 (347)
- +.+ ...+--||=.|..+++.. .+.+ ++.+.+.+=+.+++..=..+.. . +-.+.+|+++|.
T Consensus 800 ELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp 876 (953)
T KOG0736|consen 800 ELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCP 876 (953)
T ss_pred HhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCC
Confidence 1 222 233344555666665532 2233 3456677766666654443322 1 224777888875
No 195
>PRK04132 replication factor C small subunit; Provisional
Probab=97.25 E-value=0.0043 Score=63.41 Aligned_cols=140 Identities=9% Similarity=0.078 Sum_probs=85.9
Q ss_pred CCCCchHHHHHHHHHhhhccCCCC-CEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHHhcCCcEEE
Q 038882 186 AGGVGKTTLLKQLNNKLCHERHDF-DIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVL 264 (347)
Q Consensus 186 ~~GiGKTtLa~~v~~~~~~~~~~f-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~Ll 264 (347)
|.++||||+|..++++. -. ..+ ..++-++.+....... .++++..+..... . -..+.-++
T Consensus 574 Ph~lGKTT~A~ala~~l-~g-~~~~~~~lElNASd~rgid~-IR~iIk~~a~~~~----~------------~~~~~KVv 634 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FG-ENWRHNFLELNASDERGINV-IREKVKEFARTKP----I------------GGASFKII 634 (846)
T ss_pred CCcccHHHHHHHHHHhh-hc-ccccCeEEEEeCCCcccHHH-HHHHHHHHHhcCC----c------------CCCCCEEE
Confidence 77999999999999875 22 122 2455666666444443 3333332211000 0 01245799
Q ss_pred EEeCCCCcc--cccccccCCCCCCCCcEEEEecCChh-HHhhcCC-CceeecCCCCHHHHHHHHhhhh-------ChhhH
Q 038882 265 LLDDVWEPV--DLTKVGVPIPNSTNASKVLFTTRYKE-VCGKMEA-HKKLRVECLTADEAWMLFNVKV-------GEDTI 333 (347)
Q Consensus 265 VlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTtR~~~-v~~~~~~-~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~ 333 (347)
|||+++... ....++..+-.....+++|++|.+.. +...+.+ ...+.+.+++.++....+...+ .++.+
T Consensus 635 IIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L 714 (846)
T PRK04132 635 FLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGL 714 (846)
T ss_pred EEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 999998763 45555444443345677777666543 2222222 3478999999998888776543 35678
Q ss_pred HHHHHHhCCcc
Q 038882 334 DKIFVKCCCHT 344 (347)
Q Consensus 334 ~~I~~~~~G~P 344 (347)
..|++.|+|.+
T Consensus 715 ~~Ia~~s~GDl 725 (846)
T PRK04132 715 QAILYIAEGDM 725 (846)
T ss_pred HHHHHHcCCCH
Confidence 88999999865
No 196
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.23 E-value=0.0012 Score=60.00 Aligned_cols=87 Identities=15% Similarity=0.151 Sum_probs=56.1
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCcc---ccccChHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSES---WKNKSLVEKSCAI 253 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 253 (347)
..+++-|+|++|+||||||.+++... ...-..++|++..+.++.. .+++++...+. ....+.++....+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~---~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 46799999999999999999987765 2334567788777665543 34444432111 1122344555555
Q ss_pred HHHhc-CCcEEEEEeCCCC
Q 038882 254 FKILS-NKKFVLLLDDVWE 271 (347)
Q Consensus 254 ~~~l~-~kr~LlVlDdv~~ 271 (347)
...++ +..-+||+|.+-.
T Consensus 126 ~~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHHhhccCCcEEEEcchhh
Confidence 55554 4677999999853
No 197
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.22 E-value=0.0019 Score=53.44 Aligned_cols=126 Identities=21% Similarity=0.192 Sum_probs=73.2
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEe---c------------------CCC--------------
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVV---S------------------KDL-------------- 221 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v---s------------------~~~-------------- 221 (347)
....+.++|++|.|||||.+.+|... ..-.+.+|+.- + +.+
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e----~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~ 102 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEE----RPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVAL 102 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhh----cCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhh
Confidence 45688999999999999999999876 23334444410 0 000
Q ss_pred -------ChHHHH---HHHHHhcCCCCcc----ccccChHHHHHHHHHHhcCCcEEEEEeCC----CCcccccccccCCC
Q 038882 222 -------NLEKVQ---EDIGKKIDLFSES----WKNKSLVEKSCAIFKILSNKKFVLLLDDV----WEPVDLTKVGVPIP 283 (347)
Q Consensus 222 -------~~~~~~---~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~kr~LlVlDdv----~~~~~~~~l~~~l~ 283 (347)
...++- .+.+...+..... ..-+..++..-.+.+.+-+++-+|+=|+- +....|+-+...-.
T Consensus 103 pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfee 182 (223)
T COG2884 103 PLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEE 182 (223)
T ss_pred hhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHH
Confidence 122222 2223333322111 11222344445566777788999999965 33344544322222
Q ss_pred CCCCCcEEEEecCChhHHhhcCC
Q 038882 284 NSTNASKVLFTTRYKEVCGKMEA 306 (347)
Q Consensus 284 ~~~~gs~iiiTtR~~~v~~~~~~ 306 (347)
-+..|+.||++|.+..+...+..
T Consensus 183 inr~GtTVl~ATHd~~lv~~~~~ 205 (223)
T COG2884 183 INRLGTTVLMATHDLELVNRMRH 205 (223)
T ss_pred HhhcCcEEEEEeccHHHHHhccC
Confidence 34569999999999998776643
No 198
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.22 E-value=0.0013 Score=54.57 Aligned_cols=126 Identities=21% Similarity=0.188 Sum_probs=65.1
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecC--CCChHHHHHHHHHhcCC--CCccccc-------cC
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSK--DLNLEKVQEDIGKKIDL--FSESWKN-------KS 245 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~--~~~~~~~~~~i~~~l~~--~~~~~~~-------~~ 245 (347)
...+++|.|+.|.|||||.+.++... ....+.+++.-.. ....... ...++. ....... .+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~----~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS 98 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY----DPTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILS 98 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC----CCCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhC
Confidence 45799999999999999999998865 2334444432111 0111111 111111 0000000 11
Q ss_pred -hHHHHHHHHHHhcCCcEEEEEeCCCCccc---ccccccCCCCCCCCcEEEEecCChhHHhhcCCCceeec
Q 038882 246 -LVEKSCAIFKILSNKKFVLLLDDVWEPVD---LTKVGVPIPNSTNASKVLFTTRYKEVCGKMEAHKKLRV 312 (347)
Q Consensus 246 -~~~~~~~l~~~l~~kr~LlVlDdv~~~~~---~~~l~~~l~~~~~gs~iiiTtR~~~v~~~~~~~~~~~l 312 (347)
.+...-.+...+-.++-+++||+..+.-+ ...+...+.....+..||++|.+...... +.+.+.+
T Consensus 99 ~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 99 GGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 12222335556667888999999865422 12221112111224678888888776643 4444444
No 199
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.20 E-value=0.0019 Score=64.87 Aligned_cols=141 Identities=13% Similarity=0.103 Sum_probs=75.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHHhc
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILS 258 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 258 (347)
+-+.++|++|+|||++|+.+++.. ..+| +.++.+. +.. + .. ..........+...-.
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~~------~~~-~---~~-------g~~~~~~~~~f~~a~~ 242 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSD------FVE-M---FV-------GVGASRVRDMFEQAKK 242 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehHH------hHH-h---hh-------cccHHHHHHHHHHHHh
Confidence 348899999999999999998865 3333 2222211 110 0 00 1112222333333344
Q ss_pred CCcEEEEEeCCCCccc----------------ccccccCCCC--CCCCcEEEEecCChhHHhh--c---CCCceeecCCC
Q 038882 259 NKKFVLLLDDVWEPVD----------------LTKVGVPIPN--STNASKVLFTTRYKEVCGK--M---EAHKKLRVECL 315 (347)
Q Consensus 259 ~kr~LlVlDdv~~~~~----------------~~~l~~~l~~--~~~gs~iiiTtR~~~v~~~--~---~~~~~~~l~~L 315 (347)
..+++|+||+++.... ...++..+.. ...+.-+|.||...+.... . .....+.++..
T Consensus 243 ~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~P 322 (644)
T PRK10733 243 AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLP 322 (644)
T ss_pred cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCC
Confidence 5789999999965410 1111111111 1234455567776654221 1 12356788888
Q ss_pred CHHHHHHHHhhhhC------hhhHHHHHHHhCC
Q 038882 316 TADEAWMLFNVKVG------EDTIDKIFVKCCC 342 (347)
Q Consensus 316 ~~~ea~~Lf~~~~~------~~~~~~I~~~~~G 342 (347)
+.++-.+++..... +.....+.+.+.|
T Consensus 323 d~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G 355 (644)
T PRK10733 323 DVRGREQILKVHMRRVPLAPDIDAAIIARGTPG 355 (644)
T ss_pred CHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCC
Confidence 88888888876642 1223445555554
No 200
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.20 E-value=0.0028 Score=59.12 Aligned_cols=86 Identities=21% Similarity=0.293 Sum_probs=51.7
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccc---cccChHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESW---KNKSLVEKSCAI 253 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 253 (347)
...++.|.|.+|+|||||+.+++... ...-..++|++... +..++. .-+..++...+.. ...+.+.+...+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~---a~~g~~VlYvs~EE--s~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARL---AKRGGKVLYVSGEE--SPEQIK-LRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCc--CHHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 45799999999999999999998876 22234677876643 333332 2234555422221 122233333332
Q ss_pred HHHhcCCcEEEEEeCCCC
Q 038882 254 FKILSNKKFVLLLDDVWE 271 (347)
Q Consensus 254 ~~~l~~kr~LlVlDdv~~ 271 (347)
-+.+.-+||+|.+..
T Consensus 155 ---~~~~~~lVVIDSIq~ 169 (372)
T cd01121 155 ---EELKPDLVIIDSIQT 169 (372)
T ss_pred ---HhcCCcEEEEcchHH
Confidence 234778999999843
No 201
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.20 E-value=0.0012 Score=59.98 Aligned_cols=87 Identities=17% Similarity=0.143 Sum_probs=56.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCcc---ccccChHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSES---WKNKSLVEKSCAI 253 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 253 (347)
..+++-|+|++|+||||||.+++... ...-..++|++....+++. .+.+++...+. ....+.++....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~---~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEA---QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 46799999999999999999988765 2334567899887766643 33444432111 1122445555555
Q ss_pred HHHhc-CCcEEEEEeCCCC
Q 038882 254 FKILS-NKKFVLLLDDVWE 271 (347)
Q Consensus 254 ~~~l~-~kr~LlVlDdv~~ 271 (347)
...++ +..-+||+|.+-.
T Consensus 126 ~~li~s~~~~lIVIDSvaa 144 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVAA 144 (325)
T ss_pred HHHHhccCCCEEEEcchHh
Confidence 55554 3567999999843
No 202
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.19 E-value=0.0013 Score=54.92 Aligned_cols=121 Identities=19% Similarity=0.220 Sum_probs=66.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEec--CCCChHHHH------HHHHHhcCCCC---ccccccC
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVS--KDLNLEKVQ------EDIGKKIDLFS---ESWKNKS 245 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs--~~~~~~~~~------~~i~~~l~~~~---~~~~~~~ 245 (347)
+..+++|.|..|.|||||++.++... ......+++.-. ...+..... .++++.++... ......+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL----KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 45799999999999999999998764 334444444211 111222211 12445554321 1111122
Q ss_pred -hHHHHHHHHHHhcCCcEEEEEeCCCCccc---ccccccCCCCC-CC-CcEEEEecCChhHH
Q 038882 246 -LVEKSCAIFKILSNKKFVLLLDDVWEPVD---LTKVGVPIPNS-TN-ASKVLFTTRYKEVC 301 (347)
Q Consensus 246 -~~~~~~~l~~~l~~kr~LlVlDdv~~~~~---~~~l~~~l~~~-~~-gs~iiiTtR~~~v~ 301 (347)
.+...-.+...+-..+-++++|+..+.-+ ...+...+... .. +..||++|.+....
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 23333446666777889999999865422 22222222111 12 56788888877654
No 203
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0032 Score=62.84 Aligned_cols=147 Identities=14% Similarity=0.196 Sum_probs=81.0
Q ss_pred cccchhh---hHHHHHHHhhcc---------CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHH
Q 038882 158 RIIGQES---IFDDVWRCIIEE---------QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEK 225 (347)
Q Consensus 158 ~~vGR~~---~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 225 (347)
++.|-++ |+.++++.|.++ -.+=+.++|++|+|||-||++++... .+-|++++..
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA--------gVPF~svSGS----- 378 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSVSGS----- 378 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc--------CCceeeechH-----
Confidence 4566654 666777777764 25667899999999999999998865 2334455443
Q ss_pred HHHHHHHhcCCCCccccccChHHHHHHHHHHh-cCCcEEEEEeCCCCcc-----------------cccccccCCCCCCC
Q 038882 226 VQEDIGKKIDLFSESWKNKSLVEKSCAIFKIL-SNKKFVLLLDDVWEPV-----------------DLTKVGVPIPNSTN 287 (347)
Q Consensus 226 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~-----------------~~~~l~~~l~~~~~ 287 (347)
+..+.+...+ ..+...|.... ...++++.+|+++... .+.+++........
T Consensus 379 ---EFvE~~~g~~--------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~ 447 (774)
T KOG0731|consen 379 ---EFVEMFVGVG--------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET 447 (774)
T ss_pred ---HHHHHhcccc--------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC
Confidence 1111111100 12223333333 3468999999986541 12222222221222
Q ss_pred Cc--EEEEecCChhHHhh--cC---CCceeecCCCCHHHHHHHHhhhh
Q 038882 288 AS--KVLFTTRYKEVCGK--ME---AHKKLRVECLTADEAWMLFNVKV 328 (347)
Q Consensus 288 gs--~iiiTtR~~~v~~~--~~---~~~~~~l~~L~~~ea~~Lf~~~~ 328 (347)
+. -++-+|+..++.+. +. -+..+.++.-+.....++|.-++
T Consensus 448 ~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~ 495 (774)
T KOG0731|consen 448 SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHL 495 (774)
T ss_pred CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHh
Confidence 22 33346665554321 22 23467777777777777777665
No 204
>PRK13695 putative NTPase; Provisional
Probab=97.18 E-value=0.00088 Score=55.65 Aligned_cols=23 Identities=48% Similarity=0.725 Sum_probs=20.8
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.++|+|.+|+|||||++.+++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998876
No 205
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.17 E-value=0.0033 Score=61.57 Aligned_cols=167 Identities=11% Similarity=0.082 Sum_probs=101.1
Q ss_pred CCcccchhhhHHHHHHHhhc-----cCceEEEEEeCCCCchHHHHHHHHHhhhc--cCCCCC--EEEEEEecCCCChHHH
Q 038882 156 EPRIIGQESIFDDVWRCIIE-----EQVGIIGLYGAGGVGKTTLLKQLNNKLCH--ERHDFD--IVIWVVVSKDLNLEKV 226 (347)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~--~~~~f~--~~~wv~vs~~~~~~~~ 226 (347)
+..+-+|+.+..+|...+.. ...+.+-|.|-+|+|||..+..|.+.... .+..-. ..+.|+.-.-..+.++
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREI 474 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHH
Confidence 35678999999999888754 23458899999999999999999987631 122222 2334444445579999
Q ss_pred HHHHHHhcCCCCccccccChHHHHHHHHHHhc-----CCcEEEEEeCCCCccc--ccccccCCCC-CCCCcEEEEecC-C
Q 038882 227 QEDIGKKIDLFSESWKNKSLVEKSCAIFKILS-----NKKFVLLLDDVWEPVD--LTKVGVPIPN-STNASKVLFTTR-Y 297 (347)
Q Consensus 227 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~~~--~~~l~~~l~~-~~~gs~iiiTtR-~ 297 (347)
...|..++.... .........|..++. .+.++|++|+++..-. -+-+-..|.+ ..++||++|-+= +
T Consensus 475 Y~~I~~~lsg~~-----~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 475 YEKIWEALSGER-----VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN 549 (767)
T ss_pred HHHHHHhcccCc-----ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc
Confidence 999999987632 233444555555554 3678999999865411 1111111211 235677655432 1
Q ss_pred -hh---------HHhhcCCCceeecCCCCHHHHHHHHhhhh
Q 038882 298 -KE---------VCGKMEAHKKLRVECLTADEAWMLFNVKV 328 (347)
Q Consensus 298 -~~---------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 328 (347)
.+ ++..++- ..+...|.+.++-.++...++
T Consensus 550 TmdlPEr~l~nrvsSRlg~-tRi~F~pYth~qLq~Ii~~RL 589 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRLGL-TRICFQPYTHEQLQEIISARL 589 (767)
T ss_pred cccCHHHHhccchhhhccc-eeeecCCCCHHHHHHHHHHhh
Confidence 11 2222222 356667777777666666554
No 206
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.16 E-value=0.0036 Score=54.83 Aligned_cols=89 Identities=13% Similarity=0.136 Sum_probs=56.0
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCcc----------------
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSES---------------- 240 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---------------- 240 (347)
...++.|.|.+|+|||+||.++.... -..-..++|++... ++.++.+.+. +++..-..
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~---~~~ge~~lyvs~ee--~~~~i~~~~~-~~g~~~~~~~~~g~l~~~d~~~~~ 93 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGIYVALEE--HPVQVRRNMA-QFGWDVRKYEEEGKFAIVDAFTGG 93 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEEeeC--CHHHHHHHHH-HhCCCHHHHhhcCCEEEEeccccc
Confidence 56899999999999999999876654 13345778887655 4555555432 22211000
Q ss_pred ------------ccccChHHHHHHHHHHhcC-CcEEEEEeCCCC
Q 038882 241 ------------WKNKSLVEKSCAIFKILSN-KKFVLLLDDVWE 271 (347)
Q Consensus 241 ------------~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~ 271 (347)
....+..+....+.+.++. +.-++|+|.+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~ 137 (237)
T TIGR03877 94 IGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTT 137 (237)
T ss_pred cccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhH
Confidence 0123455666667666643 455799999854
No 207
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.16 E-value=0.0028 Score=52.23 Aligned_cols=125 Identities=13% Similarity=0.123 Sum_probs=64.3
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCC--CC---EEEEEEecCCC--ChHHHHHHHHHhcCCCCccccccChHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHD--FD---IVIWVVVSKDL--NLEKVQEDIGKKIDLFSESWKNKSLVEK 249 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~--f~---~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 249 (347)
+..+++|+|..|.|||||++.+.......... ++ .+.++ .+.. ....+...+... . ...-...+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~--~---~~~LS~G~~~ 98 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP--W---DDVLSGGEQQ 98 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc--C---CCCCCHHHHH
Confidence 45799999999999999999998765111111 11 12222 2221 111233332210 0 1111222333
Q ss_pred HHHHHHHhcCCcEEEEEeCCCCcccc---cccccCCCCCCCCcEEEEecCChhHHhhcCCCceeec
Q 038882 250 SCAIFKILSNKKFVLLLDDVWEPVDL---TKVGVPIPNSTNASKVLFTTRYKEVCGKMEAHKKLRV 312 (347)
Q Consensus 250 ~~~l~~~l~~kr~LlVlDdv~~~~~~---~~l~~~l~~~~~gs~iiiTtR~~~v~~~~~~~~~~~l 312 (347)
.-.+...+-.++=++++|+--+.-+. ..+...+... +..||++|.+..... .+.+.+.+
T Consensus 99 rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~--~~d~i~~l 160 (166)
T cd03223 99 RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK--FHDRVLDL 160 (166)
T ss_pred HHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh--hCCEEEEE
Confidence 44556666678889999998554221 1221222111 356888888776543 23344444
No 208
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.16 E-value=0.0032 Score=55.21 Aligned_cols=76 Identities=17% Similarity=0.214 Sum_probs=45.6
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHHh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKIL 257 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 257 (347)
...+.++|.+|+|||+||..+++.. .. .-..+++++ ..+++..+-..... ...+.. .+.+.+
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l-~~--~g~~v~~it------~~~l~~~l~~~~~~-----~~~~~~----~~l~~l 160 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNEL-LL--RGKSVLIIT------VADIMSAMKDTFSN-----SETSEE----QLLNDL 160 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH-Hh--cCCeEEEEE------HHHHHHHHHHHHhh-----ccccHH----HHHHHh
Confidence 3578999999999999999999987 22 223455553 34455544433311 011111 233334
Q ss_pred cCCcEEEEEeCCCCc
Q 038882 258 SNKKFVLLLDDVWEP 272 (347)
Q Consensus 258 ~~kr~LlVlDdv~~~ 272 (347)
. +.=+|||||+...
T Consensus 161 ~-~~dlLvIDDig~~ 174 (244)
T PRK07952 161 S-NVDLLVIDEIGVQ 174 (244)
T ss_pred c-cCCEEEEeCCCCC
Confidence 4 3458888999553
No 209
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.15 E-value=0.0022 Score=56.61 Aligned_cols=75 Identities=23% Similarity=0.309 Sum_probs=46.7
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKI 256 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 256 (347)
...-+.++|.+|+|||.||..+.+.. . +..+ .+.++ +..+++.++...... ......|.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l-~-~~g~-sv~f~------~~~el~~~Lk~~~~~----------~~~~~~l~~~ 164 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNEL-L-KAGI-SVLFI------TAPDLLSKLKAAFDE----------GRLEEKLLRE 164 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHH-H-HcCC-eEEEE------EHHHHHHHHHHHHhc----------CchHHHHHHH
Confidence 56788999999999999999999998 3 3233 34444 345566666554432 1111222222
Q ss_pred hcCCcEEEEEeCCCC
Q 038882 257 LSNKKFVLLLDDVWE 271 (347)
Q Consensus 257 l~~kr~LlVlDdv~~ 271 (347)
+. +-=||||||+-.
T Consensus 165 l~-~~dlLIiDDlG~ 178 (254)
T COG1484 165 LK-KVDLLIIDDIGY 178 (254)
T ss_pred hh-cCCEEEEecccC
Confidence 22 335899999954
No 210
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.15 E-value=0.0023 Score=53.00 Aligned_cols=23 Identities=48% Similarity=0.522 Sum_probs=21.1
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
++.++|++|+||||++..++...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999998876
No 211
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.15 E-value=0.0026 Score=54.54 Aligned_cols=46 Identities=26% Similarity=0.399 Sum_probs=37.8
Q ss_pred CcccchhhhHHHHHHHhhc----cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 157 PRIIGQESIFDDVWRCIIE----EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..++|.+...+.|++.... ....-|.+||.-|.|||+|++.+.+.+
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 4679988888888765433 356678999999999999999999987
No 212
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.14 E-value=0.00089 Score=55.01 Aligned_cols=115 Identities=17% Similarity=0.181 Sum_probs=63.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCC--CChHHHHHHHHHhcCCCCccccccChHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKD--LNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIF 254 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 254 (347)
+..+++|.|..|.|||||.+.++... ......+++.-..- .+..+. ....++.. ..-...+...-.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~---~qLS~G~~qrl~la 94 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDA---RRAGIAMV---YQLSVGERQMVEIA 94 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHH---HhcCeEEE---EecCHHHHHHHHHH
Confidence 45799999999999999999998764 34455555532111 111111 11112210 11222233344566
Q ss_pred HHhcCCcEEEEEeCCCCccc---ccccccCCCC-CCCCcEEEEecCChhHH
Q 038882 255 KILSNKKFVLLLDDVWEPVD---LTKVGVPIPN-STNASKVLFTTRYKEVC 301 (347)
Q Consensus 255 ~~l~~kr~LlVlDdv~~~~~---~~~l~~~l~~-~~~gs~iiiTtR~~~v~ 301 (347)
..+-.++-++++|+..+.-+ ...+...+.. ...|..||++|.+....
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 66677888999999865422 1222222211 12366788888887644
No 213
>PRK09354 recA recombinase A; Provisional
Probab=97.14 E-value=0.0018 Score=59.43 Aligned_cols=87 Identities=15% Similarity=0.142 Sum_probs=57.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCcc---ccccChHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSES---WKNKSLVEKSCAI 253 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 253 (347)
..+++-|+|++|+|||||+.+++... ...-..++|++....++.. .+.+++...+. ....+.++....+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~---~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 46799999999999999999988765 3344677899887776653 34444432111 1122345555555
Q ss_pred HHHhc-CCcEEEEEeCCCC
Q 038882 254 FKILS-NKKFVLLLDDVWE 271 (347)
Q Consensus 254 ~~~l~-~kr~LlVlDdv~~ 271 (347)
...++ +..-+||+|.+-.
T Consensus 131 ~~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HHHhhcCCCCEEEEeChhh
Confidence 55554 4567999999853
No 214
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.13 E-value=0.0011 Score=54.95 Aligned_cols=126 Identities=13% Similarity=0.172 Sum_probs=64.6
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecC--CCChHHHHHHHHHhcCCCCcc--c-c-------cc
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSK--DLNLEKVQEDIGKKIDLFSES--W-K-------NK 244 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~--~~~~~~~~~~i~~~l~~~~~~--~-~-------~~ 244 (347)
...+++|+|..|.|||||.+.++... ......+++.-.. ..+..... ..++...+. . . -.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~~~~----~~i~~~~q~~~~~~~tv~~~lLS 98 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL----RPTSGRVRLDGADISQWDPNELG----DHVGYLPQDDELFSGSIAENILS 98 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc----CCCCCeEEECCEEcccCCHHHHH----hheEEECCCCccccCcHHHHCcC
Confidence 45699999999999999999998765 2333444432111 11111111 111110000 0 0 01
Q ss_pred ChHHHHHHHHHHhcCCcEEEEEeCCCCcccc---cccccCCCC-CCCCcEEEEecCChhHHhhcCCCceeec
Q 038882 245 SLVEKSCAIFKILSNKKFVLLLDDVWEPVDL---TKVGVPIPN-STNASKVLFTTRYKEVCGKMEAHKKLRV 312 (347)
Q Consensus 245 ~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~---~~l~~~l~~-~~~gs~iiiTtR~~~v~~~~~~~~~~~l 312 (347)
..+...-.+...+-.++-+++||+..+.-+. ..+...+.. ...|..||++|.+..... . +.+.+.+
T Consensus 99 ~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~-~d~v~~l 168 (173)
T cd03246 99 GGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-S-ADRILVL 168 (173)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence 1122333455556667789999998654221 112111111 123667888888877654 2 3444444
No 215
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.12 E-value=0.0041 Score=55.35 Aligned_cols=127 Identities=14% Similarity=0.124 Sum_probs=67.5
Q ss_pred HHHHHHhhc-cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCC-CCcc----
Q 038882 167 DDVWRCIIE-EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDL-FSES---- 240 (347)
Q Consensus 167 ~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~-~~~~---- 240 (347)
+.++..|.. .....++|+|++|.|||||.+.+.... ......+++.-.. ....+-..++...... ++..
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~----~~~~G~i~~~g~~-v~~~d~~~ei~~~~~~~~q~~~~~r 173 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARIL----STGISQLGLRGKK-VGIVDERSEIAGCVNGVPQHDVGIR 173 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCcc----CCCCceEEECCEE-eecchhHHHHHHHhccccccccccc
Confidence 334444433 345789999999999999999998766 2333344432100 0000111233322211 1110
Q ss_pred ccccChHHHHHHHHHHhc-CCcEEEEEeCCCCcccccccccCCCCCCCCcEEEEecCChhHH
Q 038882 241 WKNKSLVEKSCAIFKILS-NKKFVLLLDDVWEPVDLTKVGVPIPNSTNASKVLFTTRYKEVC 301 (347)
Q Consensus 241 ~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~ 301 (347)
.+-.+.......+...+. ..+-++++|++-....+..+...+ ..|..+|+||....+.
T Consensus 174 ~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 174 TDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDVE 232 (270)
T ss_pred ccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHHH
Confidence 000111111222333333 588999999997666565554443 2477899999976653
No 216
>PRK06696 uridine kinase; Validated
Probab=97.12 E-value=0.00085 Score=58.19 Aligned_cols=42 Identities=17% Similarity=0.329 Sum_probs=34.5
Q ss_pred chhhhHHHHHHHhhc---cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 161 GQESIFDDVWRCIIE---EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 161 GR~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.|..-+++|.+.+.. +...+|+|.|.+|+||||||+.+....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 356667777777753 467899999999999999999999876
No 217
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.11 E-value=0.0044 Score=52.44 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=46.2
Q ss_pred EEEEEeCCCCchHHHHHHHHHhhhccCCCCC---EEEEEEecCCCChHHHHHHHHHhc--CCCCccccccChHHHHHHHH
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKLCHERHDFD---IVIWVVVSKDLNLEKVQEDIGKKI--DLFSESWKNKSLVEKSCAIF 254 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~---~~~wv~vs~~~~~~~~~~~i~~~l--~~~~~~~~~~~~~~~~~~l~ 254 (347)
+|+|.|.+|+||||+|+.+.... .. .... ....++.............- ... ......+...+.+.+...|.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L-~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQIL-NK-RGIPAMEMDIILSLDDFYDDYHLRDRK-GRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-TT-CTTTCCCSEEEEEGGGGBHHHHHHHHH-HHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-Cc-cCcCccceeEEEeecccccccchhhHh-hccccccCCCCccccCHHHHHHHHH
Confidence 69999999999999999999887 21 2222 23333333322222222221 111 11112334567777777787
Q ss_pred HHhcCCcEEE
Q 038882 255 KILSNKKFVL 264 (347)
Q Consensus 255 ~~l~~kr~Ll 264 (347)
.+.+++..-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7766665443
No 218
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0018 Score=57.80 Aligned_cols=81 Identities=21% Similarity=0.249 Sum_probs=51.5
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhhhcc--CCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHH
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKLCHE--RHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFK 255 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 255 (347)
.++|.++|+||.|||+|++.++... .+ ...|....-+.++. ..++.+-+.. ..+....+.+++.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL-SIR~~~~y~~~~liEins----hsLFSKWFsE--------SgKlV~kmF~kI~E 243 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL-SIRTNDRYYKGQLIEINS----HSLFSKWFSE--------SGKLVAKMFQKIQE 243 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh-eeeecCccccceEEEEeh----hHHHHHHHhh--------hhhHHHHHHHHHHH
Confidence 5899999999999999999999987 43 23444333443332 2222222211 23345666777888
Q ss_pred HhcCCc--EEEEEeCCCC
Q 038882 256 ILSNKK--FVLLLDDVWE 271 (347)
Q Consensus 256 ~l~~kr--~LlVlDdv~~ 271 (347)
.++++. ..+.+|+|.+
T Consensus 244 Lv~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 244 LVEDRGNLVFVLIDEVES 261 (423)
T ss_pred HHhCCCcEEEEEeHHHHH
Confidence 887755 4456898864
No 219
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0046 Score=57.13 Aligned_cols=95 Identities=19% Similarity=0.280 Sum_probs=57.8
Q ss_pred HHHHHHhhcc--CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccc---
Q 038882 167 DDVWRCIIEE--QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESW--- 241 (347)
Q Consensus 167 ~~l~~~L~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--- 241 (347)
.++-..|..+ ...++.|-|.+|||||||..++..+. . ..- .+.||+-.+. +.++ +--+..++.+.+..
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~l-A--~~~-~vLYVsGEES--~~Qi-klRA~RL~~~~~~l~l~ 152 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARL-A--KRG-KVLYVSGEES--LQQI-KLRADRLGLPTNNLYLL 152 (456)
T ss_pred HHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHH-H--hcC-cEEEEeCCcC--HHHH-HHHHHHhCCCccceEEe
Confidence 3343444442 45799999999999999999999988 2 222 6777765443 3332 23345565433222
Q ss_pred cccChHHHHHHHHHHhcCCcEEEEEeCCCC
Q 038882 242 KNKSLVEKSCAIFKILSNKKFVLLLDDVWE 271 (347)
Q Consensus 242 ~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 271 (347)
...+.+...+.+. +.++-|+|+|-+..
T Consensus 153 aEt~~e~I~~~l~---~~~p~lvVIDSIQT 179 (456)
T COG1066 153 AETNLEDIIAELE---QEKPDLVVIDSIQT 179 (456)
T ss_pred hhcCHHHHHHHHH---hcCCCEEEEeccce
Confidence 1233333333333 36889999999854
No 220
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0015 Score=65.56 Aligned_cols=153 Identities=18% Similarity=0.234 Sum_probs=85.5
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCC-----CEEEEEEecCCCChHHHHHHHH
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDF-----DIVIWVVVSKDLNLEKVQEDIG 231 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f-----~~~~wv~vs~~~~~~~~~~~i~ 231 (347)
+.++||++|++.+++.|....-.--.++|.+|+|||+++.-++.... ...- +..++. .++..+ .
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv--~g~VP~~L~~~~i~s-----LD~g~L----v 238 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIV--NGDVPESLKDKRIYS-----LDLGSL----V 238 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHh--cCCCCHHHcCCEEEE-----ecHHHH----h
Confidence 45799999999999999875333335789999999999998888761 1111 111110 011111 0
Q ss_pred HhcCCCCccccccChHHHHHHHHHHhc-CCcEEEEEeCCCCcc----------cccccccCCCCCCCCcEEEEecCChhH
Q 038882 232 KKIDLFSESWKNKSLVEKSCAIFKILS-NKKFVLLLDDVWEPV----------DLTKVGVPIPNSTNASKVLFTTRYKEV 300 (347)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~----------~~~~l~~~l~~~~~gs~iiiTtR~~~v 300 (347)
... . -.-+.+++...+.+.++ .++.+|++|.+.... +-..++.|-...+.--.|-.||-++ .
T Consensus 239 AGa-----k-yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~E-Y 311 (786)
T COG0542 239 AGA-----K-YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDE-Y 311 (786)
T ss_pred ccc-----c-ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHH-H
Confidence 000 1 12234555555555554 458999999986541 1122222221122222244455433 2
Q ss_pred Hhhc-------CCCceeecCCCCHHHHHHHHhhh
Q 038882 301 CGKM-------EAHKKLRVECLTADEAWMLFNVK 327 (347)
Q Consensus 301 ~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~ 327 (347)
-..+ .....+.+..-+.+++..+++-.
T Consensus 312 Rk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 312 RKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 2111 22357889999999999988753
No 221
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.10 E-value=0.0011 Score=54.97 Aligned_cols=117 Identities=23% Similarity=0.271 Sum_probs=62.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCC-Cc--cccc--------cC
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLF-SE--SWKN--------KS 245 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~-~~--~~~~--------~~ 245 (347)
...+++|+|..|.|||||++.++... ......+++.-....+.. ..+...++.. ++ .... .+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS 97 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL----KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLS 97 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcC
Confidence 45699999999999999999998764 233455554211100000 1111111110 00 0001 11
Q ss_pred -hHHHHHHHHHHhcCCcEEEEEeCCCCccccc------ccccCCCCCCCCcEEEEecCChhHHh
Q 038882 246 -LVEKSCAIFKILSNKKFVLLLDDVWEPVDLT------KVGVPIPNSTNASKVLFTTRYKEVCG 302 (347)
Q Consensus 246 -~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~------~l~~~l~~~~~gs~iiiTtR~~~v~~ 302 (347)
.+...-.+...+..++=++++|+....-+.. ++...+. ..|..||++|.+.....
T Consensus 98 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiii~th~~~~~~ 159 (173)
T cd03230 98 GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK--KEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEECCCHHHHH
Confidence 1222334666677888999999986543221 2222222 23667888888876554
No 222
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.011 Score=55.17 Aligned_cols=119 Identities=21% Similarity=0.247 Sum_probs=66.2
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHHh-
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKIL- 257 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l- 257 (347)
+=-.++|+||.|||++..++++.. .|+..- +..+...+-. .|+..|
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L-----~ydIyd-LeLt~v~~n~---------------------------dLr~LL~ 282 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL-----NYDIYD-LELTEVKLDS---------------------------DLRHLLL 282 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc-----CCceEE-eeeccccCcH---------------------------HHHHHHH
Confidence 456799999999999999998875 343221 1111111111 133333
Q ss_pred -cCCcEEEEEeCCCCccc-----------cc---------ccccCCC--CC-CCCcEE-EEecCChhHH--hhcCC---C
Q 038882 258 -SNKKFVLLLDDVWEPVD-----------LT---------KVGVPIP--NS-TNASKV-LFTTRYKEVC--GKMEA---H 307 (347)
Q Consensus 258 -~~kr~LlVlDdv~~~~~-----------~~---------~l~~~l~--~~-~~gs~i-iiTtR~~~v~--~~~~~---~ 307 (347)
...+-+||+.|++..-+ .. .++..+. +. +.+-|| |+||...+-. ..+.+ +
T Consensus 283 ~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmD 362 (457)
T KOG0743|consen 283 ATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMD 362 (457)
T ss_pred hCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcce
Confidence 23566777787754311 11 1111211 11 112355 5577665432 22222 2
Q ss_pred ceeecCCCCHHHHHHHHhhhhCh
Q 038882 308 KKLRVECLTADEAWMLFNVKVGE 330 (347)
Q Consensus 308 ~~~~l~~L~~~ea~~Lf~~~~~~ 330 (347)
-.+.+..-+.+.-..||...++.
T Consensus 363 mhI~mgyCtf~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 363 MHIYMGYCTFEAFKTLASNYLGI 385 (457)
T ss_pred eEEEcCCCCHHHHHHHHHHhcCC
Confidence 36789999999999999988763
No 223
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.08 E-value=0.0019 Score=51.88 Aligned_cols=104 Identities=23% Similarity=0.282 Sum_probs=58.7
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKI 256 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 256 (347)
...+++|+|..|.|||||++.+.... ......+|+.-. ..+.... .-...+...-.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~~~-------------~~i~~~~---~lS~G~~~rv~lara 84 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL----EPDEGIVTWGST-------------VKIGYFE---QLSGGEKMRLALAKL 84 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC----CCCceEEEECCe-------------EEEEEEc---cCCHHHHHHHHHHHH
Confidence 45799999999999999999998765 233455554210 0111000 011122333345566
Q ss_pred hcCCcEEEEEeCCCCccc---ccccccCCCCCCCCcEEEEecCChhHHh
Q 038882 257 LSNKKFVLLLDDVWEPVD---LTKVGVPIPNSTNASKVLFTTRYKEVCG 302 (347)
Q Consensus 257 l~~kr~LlVlDdv~~~~~---~~~l~~~l~~~~~gs~iiiTtR~~~v~~ 302 (347)
+..++-++++|+....-+ ...+...+... +..||++|.+.....
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 667888999999865422 22222222111 246888888766553
No 224
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.08 E-value=0.0042 Score=54.23 Aligned_cols=88 Identities=14% Similarity=0.202 Sum_probs=56.7
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCcc----------------
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSES---------------- 240 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---------------- 240 (347)
...++.|+|.+|+|||+|+.++.... ...=..++|++..+ ++.++.+++ .+++..-..
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~---~~~g~~~~y~~~e~--~~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA---LKQGKKVYVITTEN--TSKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH---HhCCCEEEEEEcCC--CHHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 46799999999999999999986654 12345778888765 345555553 333321100
Q ss_pred --ccccChHHHHHHHHHHhcC-CcEEEEEeCCC
Q 038882 241 --WKNKSLVEKSCAIFKILSN-KKFVLLLDDVW 270 (347)
Q Consensus 241 --~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 270 (347)
....+...+...+.+.+.. +.-++|+|.+.
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335566677776654 66789999985
No 225
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.07 E-value=0.00068 Score=65.60 Aligned_cols=45 Identities=27% Similarity=0.421 Sum_probs=39.9
Q ss_pred cccchhhhHHHHHHHhh------ccCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 158 RIIGQESIFDDVWRCII------EEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 158 ~~vGR~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+++|.++.+++|++.|. ....+++.++|++|+||||||+.+.+-.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 47999999999999983 2466899999999999999999999877
No 226
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.06 E-value=0.01 Score=57.88 Aligned_cols=134 Identities=19% Similarity=0.195 Sum_probs=75.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCC-----CCCEEEEEEecCC---------------C-C-hHHHHHHHHHhc
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERH-----DFDIVIWVVVSKD---------------L-N-LEKVQEDIGKKI 234 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-----~f~~~~wv~vs~~---------------~-~-~~~~~~~i~~~l 234 (347)
....|+|+|+.|+|||||.+.+......... .--.+.|+.-... + . ...-.+..+..+
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 4568999999999999999999765511111 1111223321110 0 1 144555566666
Q ss_pred CCCCccc----cccC-hHHHHHHHHHHhcCCcEEEEEeCCCCccccccc---ccCCCCCCCCcEEEEecCChhHHhhcCC
Q 038882 235 DLFSESW----KNKS-LVEKSCAIFKILSNKKFVLLLDDVWEPVDLTKV---GVPIPNSTNASKVLFTTRYKEVCGKMEA 306 (347)
Q Consensus 235 ~~~~~~~----~~~~-~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l---~~~l~~~~~gs~iiiTtR~~~v~~~~~~ 306 (347)
+.+.+.. ...+ .+...-.|...+-.++=+||||.--+.-+.+.+ ...+. .-.| .||+.|.++.......
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~-~f~G-tvl~VSHDr~Fl~~va- 503 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALL-DFEG-TVLLVSHDRYFLDRVA- 503 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHH-hCCC-eEEEEeCCHHHHHhhc-
Confidence 5543322 1112 233344566667789999999998776443332 22221 1234 4888999988776654
Q ss_pred CceeecC
Q 038882 307 HKKLRVE 313 (347)
Q Consensus 307 ~~~~~l~ 313 (347)
.+++.+.
T Consensus 504 ~~i~~~~ 510 (530)
T COG0488 504 TRIWLVE 510 (530)
T ss_pred ceEEEEc
Confidence 3455554
No 227
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.06 E-value=0.0015 Score=55.45 Aligned_cols=35 Identities=40% Similarity=0.531 Sum_probs=27.1
Q ss_pred HHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 168 DVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 168 ~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+..+..++.++..|.|.+|+||||+++.+...+
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEAL 42 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHH
Confidence 33444444455788999999999999999988777
No 228
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.05 E-value=0.0035 Score=54.86 Aligned_cols=125 Identities=16% Similarity=0.112 Sum_probs=73.1
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecC-----CCChHHHHHHHHHhcCCCCcc----ccccChH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSK-----DLNLEKVQEDIGKKIDLFSES----WKNKSLV 247 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-----~~~~~~~~~~i~~~l~~~~~~----~~~~~~~ 247 (347)
...+++|+|.+|+|||||++.+..-. ..-.+.++..-.+ .....+-..+++..++...+. +...+..
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~----~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE----EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc----CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 46799999999999999999998765 3334444443211 122344456667776643221 1122222
Q ss_pred HH-HHHHHHHhcCCcEEEEEeCCCCcccc---cccccCCC--CCCCCcEEEEecCChhHHhhcC
Q 038882 248 EK-SCAIFKILSNKKFVLLLDDVWEPVDL---TKVGVPIP--NSTNASKVLFTTRYKEVCGKME 305 (347)
Q Consensus 248 ~~-~~~l~~~l~~kr~LlVlDdv~~~~~~---~~l~~~l~--~~~~gs~iiiTtR~~~v~~~~~ 305 (347)
++ .-.+.+.|.-++-++|.|+.-+..+. ..+...+. ....|...++.|.+-.+...+.
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhc
Confidence 33 33566778889999999997554322 11111111 1233556777777777665543
No 229
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.05 E-value=0.0034 Score=53.93 Aligned_cols=130 Identities=16% Similarity=0.187 Sum_probs=73.4
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEe----------------------cCCC-------------
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVV----------------------SKDL------------- 221 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v----------------------s~~~------------- 221 (347)
..-.++|+|++|+|||||...+..-. ..-...+++.- -+.+
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld----~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~ 105 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLD----KPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVE 105 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc----CCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHH
Confidence 45699999999999999999887543 11222323211 1111
Q ss_pred -----------ChHHHHHHHHHhcCCCCcc----c-cccChHHHHHHHHHHhcCCcEEEEEeCCCCccc---ccccccCC
Q 038882 222 -----------NLEKVQEDIGKKIDLFSES----W-KNKSLVEKSCAIFKILSNKKFVLLLDDVWEPVD---LTKVGVPI 282 (347)
Q Consensus 222 -----------~~~~~~~~i~~~l~~~~~~----~-~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~---~~~l~~~l 282 (347)
...+....++..++..... + .-...++..-.+.+.|-.++-+|+-|+--..-+ -+.+...+
T Consensus 106 lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll 185 (226)
T COG1136 106 LPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELL 185 (226)
T ss_pred hHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHH
Confidence 1133344555565543111 1 122334445567777888899999998633211 11111112
Q ss_pred C--CCCCCcEEEEecCChhHHhhcCCCceeec
Q 038882 283 P--NSTNASKVLFTTRYKEVCGKMEAHKKLRV 312 (347)
Q Consensus 283 ~--~~~~gs~iiiTtR~~~v~~~~~~~~~~~l 312 (347)
. ....|..||+.|.+..++..+. +.+.+
T Consensus 186 ~~~~~~~g~tii~VTHd~~lA~~~d--r~i~l 215 (226)
T COG1136 186 RELNKERGKTIIMVTHDPELAKYAD--RVIEL 215 (226)
T ss_pred HHHHHhcCCEEEEEcCCHHHHHhCC--EEEEE
Confidence 1 1245778999999999988543 34444
No 230
>PRK08233 hypothetical protein; Provisional
Probab=97.05 E-value=0.0032 Score=52.44 Aligned_cols=25 Identities=44% Similarity=0.585 Sum_probs=22.6
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+|+|.|.+|+||||||+.+....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998765
No 231
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.05 E-value=0.0039 Score=59.11 Aligned_cols=26 Identities=35% Similarity=0.359 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...++.++|.+|+||||.+..++...
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 35799999999999999998888765
No 232
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.04 E-value=0.0061 Score=57.97 Aligned_cols=57 Identities=23% Similarity=0.233 Sum_probs=36.6
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCC-CChHHHHHHHHHhcCC
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKD-LNLEKVQEDIGKKIDL 236 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~ 236 (347)
...+|.++|.+|+||||++..++..+ ... .+ .+..+++... ....+.+..+..+++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L-~~~-g~-kV~lV~~D~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF-KKK-GL-KVGLVAADTYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-HHc-CC-eEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 35799999999999999999999877 322 22 3444444321 1234445566666654
No 233
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.03 E-value=0.0007 Score=53.97 Aligned_cols=43 Identities=19% Similarity=0.319 Sum_probs=31.2
Q ss_pred cchhhhHHHHHHHhhc--cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 160 IGQESIFDDVWRCIIE--EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 160 vGR~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
||.-..++++.+.+.. .....|.|+|..|+||+++|+.++...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 4566666677666654 345678999999999999999988765
No 234
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.03 E-value=0.0026 Score=54.12 Aligned_cols=26 Identities=50% Similarity=0.773 Sum_probs=23.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.+.+|+|.|.+|+||||+|+.++...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~ 32 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL 32 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999999887
No 235
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.02 E-value=0.0022 Score=58.24 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=40.4
Q ss_pred cchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEE
Q 038882 160 IGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVI 213 (347)
Q Consensus 160 vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~ 213 (347)
-+|..+-.--+++|.++....|.+.|.+|.|||-||-...-.....+..|+.++
T Consensus 227 ~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~Kii 280 (436)
T COG1875 227 RPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKII 280 (436)
T ss_pred CcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEE
Confidence 457777777888999999999999999999999998765433323445555443
No 236
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.01 E-value=0.0074 Score=55.30 Aligned_cols=93 Identities=13% Similarity=0.201 Sum_probs=58.0
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCC----CCCEEEEEEecCCCChHHHHHHHHHhcCCCCcc-------ccccC
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERH----DFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSES-------WKNKS 245 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 245 (347)
...++-|+|++|+|||+|+.+++... .... .-..++|++....+++..+. +++..++...+. ....+
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~-~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~~~~~~l~~i~~~~~~~ 178 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNV-QLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGLDPDEVLDNIHVARAYN 178 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHh-ccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCCChHhhhccEEEEeCCC
Confidence 46789999999999999999998664 1111 11478999998888877765 444545432111 00111
Q ss_pred h---HHHHHHHHHHhcC--CcEEEEEeCCCC
Q 038882 246 L---VEKSCAIFKILSN--KKFVLLLDDVWE 271 (347)
Q Consensus 246 ~---~~~~~~l~~~l~~--kr~LlVlDdv~~ 271 (347)
. ......+...+.. +--|||+|.+-.
T Consensus 179 ~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa 209 (317)
T PRK04301 179 SDHQMLLAEKAEELIKEGENIKLVIVDSLTA 209 (317)
T ss_pred HHHHHHHHHHHHHHHhccCceeEEEEECchH
Confidence 1 2234455555543 445999999844
No 237
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.99 E-value=0.0066 Score=54.52 Aligned_cols=82 Identities=17% Similarity=0.085 Sum_probs=42.9
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHH
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFK 255 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 255 (347)
....+|+|.|.+|+||||+|+.+.... .....-..+..++...-......+.... +......+...+...+...+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll-~~~~~~g~V~vi~~D~f~~~~~~l~~~g--~~~~~g~P~s~D~~~l~~~L~~ 136 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL-SRWPEHRKVELITTDGFLHPNQVLKERN--LMKKKGFPESYDMHRLVKFLSD 136 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH-hhcCCCCceEEEecccccccHHHHHHcC--CccccCCChhccHHHHHHHHHH
Confidence 346799999999999999998876655 1111111234444444333333332211 1011112334555666666665
Q ss_pred HhcCC
Q 038882 256 ILSNK 260 (347)
Q Consensus 256 ~l~~k 260 (347)
...++
T Consensus 137 Lk~g~ 141 (290)
T TIGR00554 137 LKSGK 141 (290)
T ss_pred HHCCC
Confidence 55544
No 238
>PRK10867 signal recognition particle protein; Provisional
Probab=96.98 E-value=0.0047 Score=58.64 Aligned_cols=26 Identities=35% Similarity=0.417 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+|.++|.+|+||||.+..++..+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 35799999999999999888887765
No 239
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.98 E-value=0.011 Score=53.84 Aligned_cols=94 Identities=13% Similarity=0.159 Sum_probs=58.4
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhcc---CCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccc-------cccCh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHE---RHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESW-------KNKSL 246 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~ 246 (347)
...++-|+|++|+|||+|+.+++-..... ...-..++|++....++++++. ++++.++...+.. ...+.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCCH
Confidence 45788999999999999998876433111 1122478999998888888865 4566665422110 11233
Q ss_pred HHHH---HHHHHHhc-CCcEEEEEeCCCC
Q 038882 247 VEKS---CAIFKILS-NKKFVLLLDDVWE 271 (347)
Q Consensus 247 ~~~~---~~l~~~l~-~kr~LlVlDdv~~ 271 (347)
++.. ..+...+. .+--|||+|.+-.
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSisa 202 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSIMA 202 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcchH
Confidence 3333 33333343 4566899999853
No 240
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=96.98 E-value=0.0012 Score=58.41 Aligned_cols=77 Identities=14% Similarity=0.144 Sum_probs=66.3
Q ss_pred cchhHHHhhHHHHhhhhhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 038882 11 FSCDAIFSHCLNCTERQVAFISELEDNLDSLQAEMQKLIEVRDDVMTRVIIAEQQQMKRLNQVQGWLKRVEAVEAEVREL 90 (347)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~Wl~~l~~~~~d~ed~ 90 (347)
+-|+-+++.|-++..+....+.-++.+++.++.++++++.||+.+ +++++.+. ...+.+..++...||++|.+
T Consensus 296 GyVdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V------~ee~~nkh-~~~ed~a~~ii~kAyevEYV 368 (402)
T PF12061_consen 296 GYVDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHV------VEEPHNKH-DTNEDCATQIIRKAYEVEYV 368 (402)
T ss_pred cHHHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHH------Hhccchhh-hhhhhHHHHHHHHHhheeee
Confidence 458889999999999988888899999999999999999999997 45544344 33889999999999999999
Q ss_pred HHHH
Q 038882 91 QRIQ 94 (347)
Q Consensus 91 ld~~ 94 (347)
+|.+
T Consensus 369 VDaC 372 (402)
T PF12061_consen 369 VDAC 372 (402)
T ss_pred eehh
Confidence 9975
No 241
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.98 E-value=0.001 Score=53.42 Aligned_cols=24 Identities=46% Similarity=0.544 Sum_probs=22.2
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
--|.|.|++|+|||||++.+.+..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 468999999999999999999887
No 242
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.96 E-value=0.0044 Score=54.10 Aligned_cols=124 Identities=18% Similarity=0.205 Sum_probs=71.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCC----------CC---CEEEEEEecCC----C--Ch--------------
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERH----------DF---DIVIWVVVSKD----L--NL-------------- 223 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----------~f---~~~~wv~vs~~----~--~~-------------- 223 (347)
....++|+|+.|.|||||.+.+..-....+. .+ ..+.||.-... + ++
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~ 108 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW 108 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccc
Confidence 3479999999999999999999884411100 01 24556532111 1 01
Q ss_pred --------HHHHHHHHHhcCCCC---ccccccCh-HHHHHHHHHHhcCCcEEEEEeCCCCcc------cccccccCCCCC
Q 038882 224 --------EKVQEDIGKKIDLFS---ESWKNKSL-VEKSCAIFKILSNKKFVLLLDDVWEPV------DLTKVGVPIPNS 285 (347)
Q Consensus 224 --------~~~~~~i~~~l~~~~---~~~~~~~~-~~~~~~l~~~l~~kr~LlVlDdv~~~~------~~~~l~~~l~~~ 285 (347)
.+...+.++.++..+ ......+. +...-.|.+.|..++=|++||+-...- ..-++...+..
T Consensus 109 ~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~- 187 (254)
T COG1121 109 FRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ- 187 (254)
T ss_pred cccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-
Confidence 234445555555421 11222233 333456777889999999999875532 22333333332
Q ss_pred CCCcEEEEecCChhHHh
Q 038882 286 TNASKVLFTTRYKEVCG 302 (347)
Q Consensus 286 ~~gs~iiiTtR~~~v~~ 302 (347)
.|+-||+.|.+-....
T Consensus 188 -eg~tIl~vtHDL~~v~ 203 (254)
T COG1121 188 -EGKTVLMVTHDLGLVM 203 (254)
T ss_pred -CCCEEEEEeCCcHHhH
Confidence 2888999999876543
No 243
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.96 E-value=0.0012 Score=62.88 Aligned_cols=44 Identities=11% Similarity=0.179 Sum_probs=39.0
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..++||++.++.+...+..+ ..+.|.|++|+|||+||+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHh
Confidence 46899999999999988875 578899999999999999998865
No 244
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.95 E-value=0.0015 Score=54.52 Aligned_cols=122 Identities=20% Similarity=0.219 Sum_probs=61.0
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCC--C-ccccc----------
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLF--S-ESWKN---------- 243 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~--~-~~~~~---------- 243 (347)
...+++|+|+.|.|||||++.+.... ......+.+.-........-.......+... . .....
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~ 100 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE----EPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG 100 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec
Confidence 45799999999999999999998654 2334444432111000000000111111110 0 00000
Q ss_pred cC-hHHHHHHHHHHhcCCcEEEEEeCCCCcccc---cccccCCCC--CCCCcEEEEecCChhHHh
Q 038882 244 KS-LVEKSCAIFKILSNKKFVLLLDDVWEPVDL---TKVGVPIPN--STNASKVLFTTRYKEVCG 302 (347)
Q Consensus 244 ~~-~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~---~~l~~~l~~--~~~gs~iiiTtR~~~v~~ 302 (347)
.+ .+...-.+...+..++=++++|+....-+. ..+...+.. ...|..||++|.+.....
T Consensus 101 lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 11 122333455666778889999998554221 112111111 122567888888876554
No 245
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.95 E-value=0.0082 Score=52.24 Aligned_cols=27 Identities=37% Similarity=0.594 Sum_probs=24.3
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+...+++|.|++|+|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 357799999999999999999998876
No 246
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.93 E-value=0.047 Score=49.39 Aligned_cols=159 Identities=13% Similarity=0.029 Sum_probs=87.1
Q ss_pred HHHHHHHhhccC-ceEEEEEeCCCCchHHHHHHHHHhhhc-------cCCCCCEEEEEEe-cCCCChHHHHHHHHHhcCC
Q 038882 166 FDDVWRCIIEEQ-VGIIGLYGAGGVGKTTLLKQLNNKLCH-------ERHDFDIVIWVVV-SKDLNLEKVQEDIGKKIDL 236 (347)
Q Consensus 166 ~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~-------~~~~f~~~~wv~v-s~~~~~~~~~~~i~~~l~~ 236 (347)
++.+.+.+..+. ..+..++|..|.||+++|..+.+.... ...|-+...++.. +......++. ++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 445556665543 456679999999999999999877511 0111112222221 1112222221 23332221
Q ss_pred CCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCcc--cccccccCCCCCCCCcEEEEecCCh-hHHhh-cCCCceeec
Q 038882 237 FSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPV--DLTKVGVPIPNSTNASKVLFTTRYK-EVCGK-MEAHKKLRV 312 (347)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTtR~~-~v~~~-~~~~~~~~l 312 (347)
.. +-.+++=++|+|+++... ....++..+...+.++.+|++|.+. .+... ......+++
T Consensus 84 ~~-----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f 146 (299)
T PRK07132 84 SS-----------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNV 146 (299)
T ss_pred CC-----------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEEC
Confidence 00 001477889999986653 3445555555556677777666543 33322 223457899
Q ss_pred CCCCHHHHHHHHhhh-hChhhHHHHHHHhCC
Q 038882 313 ECLTADEAWMLFNVK-VGEDTIDKIFVKCCC 342 (347)
Q Consensus 313 ~~L~~~ea~~Lf~~~-~~~~~~~~I~~~~~G 342 (347)
.+++.++..+.+... ..++.+..++...+|
T Consensus 147 ~~l~~~~l~~~l~~~~~~~~~a~~~a~~~~~ 177 (299)
T PRK07132 147 KEPDQQKILAKLLSKNKEKEYNWFYAYIFSN 177 (299)
T ss_pred CCCCHHHHHHHHHHcCCChhHHHHHHHHcCC
Confidence 999999998777663 333444444444443
No 247
>PRK06921 hypothetical protein; Provisional
Probab=96.92 E-value=0.005 Score=54.82 Aligned_cols=39 Identities=31% Similarity=0.386 Sum_probs=28.7
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEe
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVV 217 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v 217 (347)
....+.++|.+|+|||.||..+++.. ..+ .-..++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l-~~~-~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANEL-MRK-KGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH-hhh-cCceEEEEEH
Confidence 35678999999999999999999976 221 1344566653
No 248
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.92 E-value=0.005 Score=51.50 Aligned_cols=45 Identities=24% Similarity=0.204 Sum_probs=31.2
Q ss_pred EEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHH
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQED 229 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 229 (347)
++.|.|++|+|||+|+.++.... ...=..++|++... +..++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~---~~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAG---LARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH---HHCCCcEEEEECCC--CHHHHHHH
Confidence 36799999999999999987765 12224567876654 44555444
No 249
>PTZ00301 uridine kinase; Provisional
Probab=96.92 E-value=0.0033 Score=53.84 Aligned_cols=25 Identities=36% Similarity=0.676 Sum_probs=22.5
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+|+|.|.+|+||||||+.+....
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4789999999999999999988765
No 250
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.91 E-value=0.011 Score=54.38 Aligned_cols=94 Identities=13% Similarity=0.187 Sum_probs=58.6
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhc--cC-CCCCEEEEEEecCCCChHHHHHHHHHhcCCCCcc-------ccccCh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCH--ER-HDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSES-------WKNKSL 246 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~--~~-~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 246 (347)
...++-|+|.+|+|||+|+..++-.... .. ..-..++|++....++++++. +|++.++...+. ....+.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~~~~~l~~i~~~~~~~~ 200 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLNGADVLENVAYARAYNT 200 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCChhhhccceEEEecCCH
Confidence 4678889999999999999888754311 01 122378999999988887764 566666542211 011233
Q ss_pred HHHHHHHH---HHh-cCCcEEEEEeCCCC
Q 038882 247 VEKSCAIF---KIL-SNKKFVLLLDDVWE 271 (347)
Q Consensus 247 ~~~~~~l~---~~l-~~kr~LlVlDdv~~ 271 (347)
+.....+. ..+ ..+.-|||+|.+-.
T Consensus 201 e~~~~ll~~~~~~~~~~~~~LIVIDSI~a 229 (342)
T PLN03186 201 DHQSELLLEAASMMAETRFALMIVDSATA 229 (342)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEeCcHH
Confidence 33333332 223 34667999999844
No 251
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.90 E-value=0.0017 Score=58.05 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=27.3
Q ss_pred HHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 166 FDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 166 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++.+... .+-+.++|+.|+|||++++......
T Consensus 22 ~~~ll~~l~~~-~~pvLl~G~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 22 YSYLLDLLLSN-GRPVLLVGPSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp HHHHHHHHHHC-TEEEEEESSTTSSHHHHHHHHHHCS
T ss_pred HHHHHHHHHHc-CCcEEEECCCCCchhHHHHhhhccC
Confidence 34455555555 4667899999999999999988654
No 252
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.90 E-value=0.00088 Score=52.25 Aligned_cols=21 Identities=48% Similarity=0.792 Sum_probs=19.6
Q ss_pred EEEEeCCCCchHHHHHHHHHh
Q 038882 181 IGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 181 i~I~G~~GiGKTtLa~~v~~~ 201 (347)
|+|.|.+|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999877
No 253
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.90 E-value=0.0063 Score=56.53 Aligned_cols=58 Identities=24% Similarity=0.309 Sum_probs=36.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecC-CCChHHHHHHHHHhcCC
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSK-DLNLEKVQEDIGKKIDL 236 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~ 236 (347)
..++.++|+.|+||||++..+.... ........+..++... .....+-++...+.++.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~-~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv 195 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC-VMRFGASKVALLTTDSYRIGGHEQLRIFGKILGV 195 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecccccccHHHHHHHHHHHcCC
Confidence 4799999999999999999998876 2122223455555333 22334445555555554
No 254
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.90 E-value=0.0062 Score=52.64 Aligned_cols=23 Identities=43% Similarity=0.614 Sum_probs=21.2
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+|+|.|.+|+||||||+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999876
No 255
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.90 E-value=0.0051 Score=50.65 Aligned_cols=118 Identities=18% Similarity=0.199 Sum_probs=63.8
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEE-E-EEEecCCCChHHHHHHHHHhcCC--CCc--cccccC------
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIV-I-WVVVSKDLNLEKVQEDIGKKIDL--FSE--SWKNKS------ 245 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~-~-wv~vs~~~~~~~~~~~i~~~l~~--~~~--~~~~~~------ 245 (347)
...|-|++..|.||||.|..+.-+. . ...+... + |+.-.........+..+ .+.. ... .+...+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra-~-~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~ 80 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRA-L-GHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTA 80 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHH-H-HCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHH
Confidence 3678888889999999998887765 1 2233321 1 33333233444444443 1110 000 011111
Q ss_pred -hHHHHHHHHHHhcC-CcEEEEEeCCCCc-----ccccccccCCCCCCCCcEEEEecCChh
Q 038882 246 -LVEKSCAIFKILSN-KKFVLLLDDVWEP-----VDLTKVGVPIPNSTNASKVLFTTRYKE 299 (347)
Q Consensus 246 -~~~~~~~l~~~l~~-kr~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~iiiTtR~~~ 299 (347)
..+.....++.+.. +-=|||||++-.. -+.+++...+...+.+..||+|-|+..
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 12223334444444 4459999998432 333444444555667789999999863
No 256
>PRK06547 hypothetical protein; Provisional
Probab=96.90 E-value=0.0016 Score=53.96 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=27.6
Q ss_pred HHHHhhccCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 169 VWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 169 l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+...+......+|+|.|++|+||||+|+.+....
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3344455677899999999999999999998765
No 257
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.90 E-value=0.0049 Score=56.71 Aligned_cols=44 Identities=20% Similarity=0.294 Sum_probs=33.6
Q ss_pred ccchhhhHHHHHHHhhc--cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 159 IIGQESIFDDVWRCIIE--EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 159 ~vGR~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
++|....+.++.+.+.. .....|.|+|..|+||+++|+.+++.-
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 46777777777666654 344678999999999999999998754
No 258
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.90 E-value=0.011 Score=51.34 Aligned_cols=115 Identities=19% Similarity=0.171 Sum_probs=64.3
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCc-----------------
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSE----------------- 239 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----------------- 239 (347)
....+.|.|.+|+|||+|+..+.... ...-..++|++... +..++.+. +.+++..-.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~---~~~g~~~~~is~e~--~~~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~~~~ 92 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG---LRDGDPVIYVTTEE--SRESIIRQ-AAQFGMDFEKAIEEGKLVIIDALMKE 92 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH---HhcCCeEEEEEccC--CHHHHHHH-HHHhCCCHHHHhhcCCEEEEEccccc
Confidence 45799999999999999999877654 12235678887644 33444333 222221100
Q ss_pred -----cccccChHHHHHHHHHHhcC---CcEEEEEeCCCCc---c--cccccccCCC--CCCCCcEEEEecCC
Q 038882 240 -----SWKNKSLVEKSCAIFKILSN---KKFVLLLDDVWEP---V--DLTKVGVPIP--NSTNASKVLFTTRY 297 (347)
Q Consensus 240 -----~~~~~~~~~~~~~l~~~l~~---kr~LlVlDdv~~~---~--~~~~l~~~l~--~~~~gs~iiiTtR~ 297 (347)
.....+.++....+.+..+. +.-++|+|.+... . ....+...+. ....|+.+|+|+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~ 165 (229)
T TIGR03881 93 KEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQY 165 (229)
T ss_pred cccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 00123456666666666543 4568899998433 1 0011111111 12457888888763
No 259
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.89 E-value=0.0056 Score=55.90 Aligned_cols=93 Identities=13% Similarity=0.148 Sum_probs=57.3
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccC----CCCCEEEEEEecCCCChHHHHHHHHHhcCCCCcc-------ccccC
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHER----HDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSES-------WKNKS 245 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 245 (347)
...++-|+|.+|+|||+|+.+++... ... ..-..++||+....++...+. +++..++..... ....+
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~-~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl~~~~~~~~i~i~~~~~ 171 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNV-QLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGLDPDEVLKNIYVARAYN 171 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-cCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhhceEEEecCC
Confidence 46788999999999999999998764 111 011378999998888877654 445554432110 00111
Q ss_pred h---HHHHHHHHHHhcCC---cEEEEEeCCCC
Q 038882 246 L---VEKSCAIFKILSNK---KFVLLLDDVWE 271 (347)
Q Consensus 246 ~---~~~~~~l~~~l~~k---r~LlVlDdv~~ 271 (347)
. ..+...+.+.+... .-+||+|.+-.
T Consensus 172 ~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa 203 (310)
T TIGR02236 172 SNHQMLLVEKAEDLIKELNNPVKLLIVDSLTS 203 (310)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEecchH
Confidence 1 12334455555432 45999999854
No 260
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.88 E-value=0.0092 Score=54.52 Aligned_cols=94 Identities=15% Similarity=0.135 Sum_probs=56.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhc---cCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCcc-------ccccCh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCH---ERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSES-------WKNKSL 246 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 246 (347)
...++.|+|.+|+|||+|+..++..... ....-..++|++....++..+ +.++++.++..... ....+.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~~~~~~l~~i~~~~~~~~ 173 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGLNPEDVLDNVAYARAYNT 173 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCCChHHhhccEEEEecCCh
Confidence 4689999999999999999988764300 111223678999888777776 34455555442211 011233
Q ss_pred HHHHHH---HHHHhc-CCcEEEEEeCCCC
Q 038882 247 VEKSCA---IFKILS-NKKFVLLLDDVWE 271 (347)
Q Consensus 247 ~~~~~~---l~~~l~-~kr~LlVlDdv~~ 271 (347)
++.... +...+. .+.-|||+|.+-.
T Consensus 174 ~~~~~~l~~~~~~~~~~~~~LvVIDSI~a 202 (316)
T TIGR02239 174 DHQLQLLQQAAAMMSESRFALLIVDSATA 202 (316)
T ss_pred HHHHHHHHHHHHhhccCCccEEEEECcHH
Confidence 333333 333343 4567999999843
No 261
>PHA00729 NTP-binding motif containing protein
Probab=96.88 E-value=0.0016 Score=56.02 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=28.3
Q ss_pred HHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 168 DVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 168 ~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.+++.+...+...|.|+|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34455555566789999999999999999998875
No 262
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.88 E-value=0.0055 Score=54.76 Aligned_cols=94 Identities=13% Similarity=0.092 Sum_probs=51.4
Q ss_pred HHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccc-----cccC
Q 038882 171 RCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESW-----KNKS 245 (347)
Q Consensus 171 ~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-----~~~~ 245 (347)
+++...+..++.|.|.+|+|||||+..+.+.. ..... ++.+ .....+..+ .+.+...+.+.-.. -..+
T Consensus 97 ~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l---~~~~~-~~VI-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~ 169 (290)
T PRK10463 97 ARFAARKQLVLNLVSSPGSGKTTLLTETLMRL---KDSVP-CAVI-EGDQQTVND--AARIRATGTPAIQVNTGKGCHLD 169 (290)
T ss_pred HHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh---ccCCC-EEEE-CCCcCcHHH--HHHHHhcCCcEEEecCCCCCcCc
Confidence 33444578999999999999999999999876 22232 2222 112122222 12233333221111 1122
Q ss_pred hHHHHHHHHHHhcCCcEEEEEeCCCC
Q 038882 246 LVEKSCAIFKILSNKKFVLLLDDVWE 271 (347)
Q Consensus 246 ~~~~~~~l~~~l~~kr~LlVlDdv~~ 271 (347)
...+...+..+.....-+||++++-+
T Consensus 170 a~mv~~Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 170 AQMIADAAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHHHHHHHHhhcCCcEEEEECCCC
Confidence 33444455554444556888999864
No 263
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.87 E-value=0.0016 Score=52.38 Aligned_cols=44 Identities=20% Similarity=0.410 Sum_probs=34.3
Q ss_pred EEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCC
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLF 237 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 237 (347)
+|.|.|++|+||||+|+.+.+.+ .-.| .+...+++++++..+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~~-----------vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLKL-----------VSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCce-----------eeccHHHHHHHHHcCCC
Confidence 68899999999999999999887 2211 23457888998888764
No 264
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.87 E-value=0.0054 Score=58.80 Aligned_cols=86 Identities=20% Similarity=0.284 Sum_probs=51.6
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccc---cccChHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESW---KNKSLVEKSCAI 253 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 253 (347)
...++.|.|.+|+|||||+.+++... . ..-..++|++..+ +..++... +..++...+.. ...+.+.+...+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~-a--~~g~~vlYvs~Ee--s~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i 152 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARL-A--AAGGKVLYVSGEE--SASQIKLR-AERLGLPSDNLYLLAETNLEAILATI 152 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH-H--hcCCeEEEEEccc--cHHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHH
Confidence 45799999999999999999998876 2 2234677877644 33444322 44554321111 112333333333
Q ss_pred HHHhcCCcEEEEEeCCCC
Q 038882 254 FKILSNKKFVLLLDDVWE 271 (347)
Q Consensus 254 ~~~l~~kr~LlVlDdv~~ 271 (347)
. +.+.-+||+|.+..
T Consensus 153 ~---~~~~~lVVIDSIq~ 167 (446)
T PRK11823 153 E---EEKPDLVVIDSIQT 167 (446)
T ss_pred H---hhCCCEEEEechhh
Confidence 2 23667999999853
No 265
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.86 E-value=0.0042 Score=51.96 Aligned_cols=119 Identities=17% Similarity=0.138 Sum_probs=64.7
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEE---ecCCCChHHHHHHHH--Hh--cCCCCccccccC----
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVV---VSKDLNLEKVQEDIG--KK--IDLFSESWKNKS---- 245 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~---vs~~~~~~~~~~~i~--~~--l~~~~~~~~~~~---- 245 (347)
....|-|+|..|-||||.|..+.-+. - ...+ .+..+. -.........+..+- .- .+. ...+...+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra-~-g~G~-~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~-~~~~~~~~~~e~ 96 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRA-V-GHGK-KVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGT-GFTWETQDRERD 96 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHH-H-HCCC-eEEEEEEecCCCccCHHHHHhcCCCcEEEECCC-CCcccCCCcHHH
Confidence 35789999999999999998887765 1 2222 222222 222334444444321 00 011 00011111
Q ss_pred ---hHHHHHHHHHHhcC-CcEEEEEeCCCCc-----ccccccccCCCCCCCCcEEEEecCChh
Q 038882 246 ---LVEKSCAIFKILSN-KKFVLLLDDVWEP-----VDLTKVGVPIPNSTNASKVLFTTRYKE 299 (347)
Q Consensus 246 ---~~~~~~~l~~~l~~-kr~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~iiiTtR~~~ 299 (347)
..+.....++.+.+ +-=|||||++-.. .+.+++...+...+.+..||+|-|+..
T Consensus 97 ~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 97 IAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11223344445544 4569999998433 334445555555667789999999863
No 266
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.85 E-value=0.0024 Score=53.21 Aligned_cols=109 Identities=18% Similarity=0.080 Sum_probs=58.4
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHH
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFK 255 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 255 (347)
+...+++|+|+.|+|||||++.+.... ......+++.-.. ++...+...-...+...-.+..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~--------------i~~~~q~~~LSgGq~qrv~lar 84 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL----IPNGDNDEWDGIT--------------PVYKPQYIDLSGGELQRVAIAA 84 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC----CCCCcEEEECCEE--------------EEEEcccCCCCHHHHHHHHHHH
Confidence 345799999999999999999998754 2233333331100 0000000001112233344566
Q ss_pred HhcCCcEEEEEeCCCCcccc---cccccCCCC--CCCCcEEEEecCChhHHh
Q 038882 256 ILSNKKFVLLLDDVWEPVDL---TKVGVPIPN--STNASKVLFTTRYKEVCG 302 (347)
Q Consensus 256 ~l~~kr~LlVlDdv~~~~~~---~~l~~~l~~--~~~gs~iiiTtR~~~v~~ 302 (347)
.+..++-++++|+.-+.-+. ..+...+.. ...+..||++|.+.....
T Consensus 85 al~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 85 ALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 66778889999998554221 111111111 112356888888776544
No 267
>PRK04328 hypothetical protein; Provisional
Probab=96.83 E-value=0.0051 Score=54.29 Aligned_cols=88 Identities=13% Similarity=0.097 Sum_probs=53.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCcc----------------
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSES---------------- 240 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---------------- 240 (347)
...++.|.|.+|+|||+|+.++.... ...-..++|++... ++.++.+ .+++++.....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ee--~~~~i~~-~~~~~g~d~~~~~~~~~l~iid~~~~~ 95 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVALEE--HPVQVRR-NMRQFGWDVRKYEEEGKFAIVDAFTGG 95 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEeeC--CHHHHHH-HHHHcCCCHHHHhhcCCEEEEeccccc
Confidence 46899999999999999999877654 23345678887765 3444333 23333321000
Q ss_pred ------------ccccChHHHHHHHHHHhcC-CcEEEEEeCCC
Q 038882 241 ------------WKNKSLVEKSCAIFKILSN-KKFVLLLDDVW 270 (347)
Q Consensus 241 ------------~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 270 (347)
....+..+....+.+.++. +.-++|+|.+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt 138 (249)
T PRK04328 96 IGSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVS 138 (249)
T ss_pred cccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChh
Confidence 0112344555666666543 55689999984
No 268
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.82 E-value=0.003 Score=51.49 Aligned_cols=118 Identities=20% Similarity=0.226 Sum_probs=63.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKI 256 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 256 (347)
+..+++|+|..|.|||||++.+.... ......+++.-...... ........+....+ -...+...-.+...
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~~~~~~~--~~~~~~~~i~~~~q---lS~G~~~r~~l~~~ 94 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKL--PLEELRRRIGYVPQ---LSGGQRQRVALARA 94 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccC--CHHHHHhceEEEee---CCHHHHHHHHHHHH
Confidence 34799999999999999999998765 23455555432211110 01111122221000 11223333445566
Q ss_pred hcCCcEEEEEeCCCCccc---ccccccCCCC-CCCCcEEEEecCChhHHhh
Q 038882 257 LSNKKFVLLLDDVWEPVD---LTKVGVPIPN-STNASKVLFTTRYKEVCGK 303 (347)
Q Consensus 257 l~~kr~LlVlDdv~~~~~---~~~l~~~l~~-~~~gs~iiiTtR~~~v~~~ 303 (347)
+...+-++++|+....-+ ...+...+.. ...+..+|++|.+......
T Consensus 95 l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 95 LLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 666788999999865422 1222111111 1125678888888776554
No 269
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.82 E-value=0.011 Score=54.32 Aligned_cols=94 Identities=13% Similarity=0.126 Sum_probs=58.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhc---cCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCcc-------ccccCh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCH---ERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSES-------WKNKSL 246 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 246 (347)
...+.-|+|.+|+|||+|+.+++-.... ....-..++|++....|++.++.. ++..++...+. ....+.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~ 203 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTY 203 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCH
Confidence 4578889999999999999888643311 011234789999999898888654 56666543211 112233
Q ss_pred HHHHH---HHHHHh-cCCcEEEEEeCCCC
Q 038882 247 VEKSC---AIFKIL-SNKKFVLLLDDVWE 271 (347)
Q Consensus 247 ~~~~~---~l~~~l-~~kr~LlVlDdv~~ 271 (347)
++... .+...+ ..+--|||+|.+-.
T Consensus 204 e~~~~~l~~l~~~i~~~~~~LvVIDSita 232 (344)
T PLN03187 204 EHQYNLLLGLAAKMAEEPFRLLIVDSVIA 232 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 33332 233333 33566899999843
No 270
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.82 E-value=0.006 Score=59.45 Aligned_cols=57 Identities=16% Similarity=0.168 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCCccccccc--ccCCCCCCCCcEEEEecCChhHHhhc
Q 038882 247 VEKSCAIFKILSNKKFVLLLDDVWEPVDLTKV--GVPIPNSTNASKVLFTTRYKEVCGKM 304 (347)
Q Consensus 247 ~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l--~~~l~~~~~gs~iiiTtR~~~v~~~~ 304 (347)
+...-.|.+.|-.++=+|+||.--+.-+.+.+ +..+....+| .+||.|.++.....+
T Consensus 158 ~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiVSHDR~FLd~V 216 (530)
T COG0488 158 WRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVVSHDRYFLDNV 216 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHH
Confidence 44556677788888999999998776544332 1222223345 699999998766554
No 271
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.81 E-value=0.00095 Score=57.42 Aligned_cols=120 Identities=14% Similarity=0.204 Sum_probs=59.5
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhhh-ccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccc-cChHHHHHHHHH
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKLC-HERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKN-KSLVEKSCAIFK 255 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~l~~ 255 (347)
.+.+.|+|+.|.|||||.+.+..... .....| +|. .. .. ...+.++...++........ .....-..++..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~---v~a--~~-~~-~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~ 101 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSF---VPA--DS-AT-IGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSK 101 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCe---eEc--CC-cE-EeeeeeeeeeeCCccChhhccchHHHHHHHHHH
Confidence 48899999999999999999874320 111111 111 00 00 01122222222221110011 112222223333
Q ss_pred Hh--cCCcEEEEEeCCCCcccc-------cccccCCCCC-CCCcEEEEecCChhHHhhc
Q 038882 256 IL--SNKKFVLLLDDVWEPVDL-------TKVGVPIPNS-TNASKVLFTTRYKEVCGKM 304 (347)
Q Consensus 256 ~l--~~kr~LlVlDdv~~~~~~-------~~l~~~l~~~-~~gs~iiiTtR~~~v~~~~ 304 (347)
.+ ..++.|++||+.....+. ..+...+... ..+..+|+||...+.+...
T Consensus 102 ~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 102 ALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 22 468899999999664322 1122222222 2345799999998876554
No 272
>PTZ00035 Rad51 protein; Provisional
Probab=96.81 E-value=0.021 Score=52.71 Aligned_cols=93 Identities=16% Similarity=0.170 Sum_probs=56.6
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhcc----CCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCcc-------ccccC
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHE----RHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSES-------WKNKS 245 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 245 (347)
...++.|+|.+|+|||+|+..++-.. .. ...-..++|++....++..++ .++++.++..... ....+
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~-qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~ 194 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTC-QLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYN 194 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHh-ccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCC
Confidence 46799999999999999999887544 11 112235679988777777663 4555555432110 01123
Q ss_pred hHHHHHHH---HHHh-cCCcEEEEEeCCCC
Q 038882 246 LVEKSCAI---FKIL-SNKKFVLLLDDVWE 271 (347)
Q Consensus 246 ~~~~~~~l---~~~l-~~kr~LlVlDdv~~ 271 (347)
.++....+ ...+ ..+--|||+|.+..
T Consensus 195 ~e~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 195 HEHQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred HHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 33333333 2333 34567999999854
No 273
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.79 E-value=0.0013 Score=52.47 Aligned_cols=23 Identities=48% Similarity=0.713 Sum_probs=20.8
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 57899999999999999998765
No 274
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.79 E-value=0.0065 Score=59.85 Aligned_cols=47 Identities=23% Similarity=0.265 Sum_probs=38.8
Q ss_pred CCcccchhhhHHHHHHHhhc--cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 156 EPRIIGQESIFDDVWRCIIE--EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...++|....+.++.+.+.. .....|.|+|..|+|||++|+.+++..
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 35789999999988887754 344577899999999999999998764
No 275
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.78 E-value=0.0084 Score=53.39 Aligned_cols=92 Identities=22% Similarity=0.253 Sum_probs=59.6
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHh-cCCC--CccccccChHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKK-IDLF--SESWKNKSLVEKSCAI 253 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~-l~~~--~~~~~~~~~~~~~~~l 253 (347)
..+++=|+|+.|.||||+|.+++-.. +..-..++|++....+++..+.. +... +..- ..........+....+
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 45788999999999999999887665 44555889999999998877653 3333 2210 0111112223334444
Q ss_pred HHHhcCCcEEEEEeCCCCc
Q 038882 254 FKILSNKKFVLLLDDVWEP 272 (347)
Q Consensus 254 ~~~l~~kr~LlVlDdv~~~ 272 (347)
......+--|+|+|.+-..
T Consensus 135 ~~~~~~~i~LvVVDSvaa~ 153 (279)
T COG0468 135 ARSGAEKIDLLVVDSVAAL 153 (279)
T ss_pred HHhccCCCCEEEEecCccc
Confidence 4444445679999998543
No 276
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.78 E-value=0.0035 Score=58.66 Aligned_cols=46 Identities=28% Similarity=0.335 Sum_probs=37.6
Q ss_pred CcccchhhhHHHHHHHhhcc--------------CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 157 PRIIGQESIFDDVWRCIIEE--------------QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~--------------~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.+++|.++..+.+.-.+... ..+-|.++|++|+|||+||+.+....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 56899988888887666542 23678999999999999999999876
No 277
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.77 E-value=0.012 Score=51.22 Aligned_cols=49 Identities=18% Similarity=0.250 Sum_probs=32.7
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDI 230 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 230 (347)
...++.|.|.+|+|||||+.+++... . +.. ..+++++. ..+..++++.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~-~-~~g-~~~~yi~~--e~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF-L-QNG-YSVSYVST--QLTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-H-hCC-CcEEEEeC--CCCHHHHHHHH
Confidence 35699999999999999987666544 1 112 34566663 33556666665
No 278
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.77 E-value=0.0042 Score=49.35 Aligned_cols=41 Identities=37% Similarity=0.423 Sum_probs=30.1
Q ss_pred EEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHH
Q 038882 181 IGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQ 227 (347)
Q Consensus 181 i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 227 (347)
|.++|++|+|||+||+.++... .. ...-+.++...+..+++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~~---~~~~i~~~~~~~~~dl~ 42 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---GR---PVIRINCSSDTTEEDLI 42 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---TC---EEEEEE-TTTSTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh---hc---ceEEEEeccccccccce
Confidence 6799999999999999999876 22 23345677777766665
No 279
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.77 E-value=0.0046 Score=58.45 Aligned_cols=47 Identities=32% Similarity=0.347 Sum_probs=36.5
Q ss_pred CCcccchhhhHHHHHHHhhcc----------------CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 156 EPRIIGQESIFDDVWRCIIEE----------------QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~~----------------~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...++|.+..++.|...+.+. ....+.++|++|+|||+||+.++...
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 456899999888886555221 23568999999999999999998765
No 280
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.76 E-value=0.0038 Score=60.44 Aligned_cols=99 Identities=18% Similarity=0.188 Sum_probs=54.1
Q ss_pred HHHhhc-cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEE-EEEecCCCC-hHHHHHHHHHhcCCC---Cccccc
Q 038882 170 WRCIIE-EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVI-WVVVSKDLN-LEKVQEDIGKKIDLF---SESWKN 243 (347)
Q Consensus 170 ~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~-wv~vs~~~~-~~~~~~~i~~~l~~~---~~~~~~ 243 (347)
+++|.. ......+|+|++|+|||||++.+++.. . ..+-++.+ .+-+.+... +.++.+.+-..+-.. ......
T Consensus 407 IDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i-~-~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~ 484 (672)
T PRK12678 407 IDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAI-T-TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDH 484 (672)
T ss_pred eeeecccccCCEeEEeCCCCCCHHHHHHHHHHHH-h-hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHH
Confidence 344433 345788999999999999999999876 2 23334443 444555433 233322221111100 000011
Q ss_pred cChHHHHHHHHHHh--cCCcEEEEEeCCC
Q 038882 244 KSLVEKSCAIFKIL--SNKKFVLLLDDVW 270 (347)
Q Consensus 244 ~~~~~~~~~l~~~l--~~kr~LlVlDdv~ 270 (347)
.....+...+.+++ .++.+||++|++-
T Consensus 485 ~~~a~~ai~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 485 TTVAELAIERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeCch
Confidence 11223334455555 5799999999984
No 281
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.76 E-value=0.0043 Score=53.08 Aligned_cols=26 Identities=38% Similarity=0.611 Sum_probs=23.6
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+|+|+|++|+|||||++.+....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998876
No 282
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.75 E-value=0.01 Score=56.99 Aligned_cols=86 Identities=19% Similarity=0.251 Sum_probs=50.2
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCcc---ccccChHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSES---WKNKSLVEKSCAI 253 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 253 (347)
...++.|.|.+|+|||||+.++.... . ..-..++|++..+ +..++.. -+..++...+. ....+.+.+...+
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~-a--~~g~kvlYvs~EE--s~~qi~~-ra~rlg~~~~~l~~~~e~~~~~I~~~i 166 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQL-A--KNQMKVLYVSGEE--SLQQIKM-RAIRLGLPEPNLYVLSETNWEQICANI 166 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-H--hcCCcEEEEECcC--CHHHHHH-HHHHcCCChHHeEEcCCCCHHHHHHHH
Confidence 46799999999999999999998766 2 2223577876544 3344332 23344432111 1122333333332
Q ss_pred HHHhcCCcEEEEEeCCCC
Q 038882 254 FKILSNKKFVLLLDDVWE 271 (347)
Q Consensus 254 ~~~l~~kr~LlVlDdv~~ 271 (347)
. +.+.-++|+|.+..
T Consensus 167 ~---~~~~~~vVIDSIq~ 181 (454)
T TIGR00416 167 E---EENPQACVIDSIQT 181 (454)
T ss_pred H---hcCCcEEEEecchh
Confidence 2 23667899999854
No 283
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.75 E-value=0.01 Score=53.35 Aligned_cols=87 Identities=24% Similarity=0.279 Sum_probs=46.5
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCC-ChHHHHHHHHHhcCCCCccccccChHHHHHHHHHH
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDL-NLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKI 256 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 256 (347)
.+++.++|++|+||||++..++... .....-..+..++..... .....+......++.+.. ...+...+...+..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~-~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l~~- 269 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARF-VLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKALDR- 269 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHHHH-
Confidence 5799999999999999999998776 222111245555544321 122233333344443211 12233444433333
Q ss_pred hcCCcEEEEEeCC
Q 038882 257 LSNKKFVLLLDDV 269 (347)
Q Consensus 257 l~~kr~LlVlDdv 269 (347)
+.+ .=+|++|..
T Consensus 270 ~~~-~d~vliDt~ 281 (282)
T TIGR03499 270 LRD-KDLILIDTA 281 (282)
T ss_pred ccC-CCEEEEeCC
Confidence 333 347777753
No 284
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.73 E-value=0.0025 Score=50.43 Aligned_cols=104 Identities=14% Similarity=0.117 Sum_probs=57.0
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHHh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKIL 257 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 257 (347)
.+-|.|.|.||+|||||+..++... .| -|+++|.-...+.+...--.+ -.....+.+.+...|...+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~-----~~---~~i~isd~vkEn~l~~gyDE~-----y~c~i~DEdkv~D~Le~~m 73 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT-----GL---EYIEISDLVKENNLYEGYDEE-----YKCHILDEDKVLDELEPLM 73 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh-----CC---ceEehhhHHhhhcchhccccc-----ccCccccHHHHHHHHHHHH
Confidence 4568899999999999999998654 22 466666543333332221111 1123456677777777776
Q ss_pred cCCcEEEEEeCCCCcccccccccCCCCCCCCcEEEEecCChhHHhhc
Q 038882 258 SNKKFVLLLDDVWEPVDLTKVGVPIPNSTNASKVLFTTRYKEVCGKM 304 (347)
Q Consensus 258 ~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~~ 304 (347)
.+..+++ | |..- ..||..--.--+++||-+..+..++
T Consensus 74 ~~Gg~IV--D-------yHgC-d~FperwfdlVvVLr~~~s~LY~RL 110 (176)
T KOG3347|consen 74 IEGGNIV--D-------YHGC-DFFPERWFDLVVVLRTPNSVLYDRL 110 (176)
T ss_pred hcCCcEE--e-------eccc-CccchhheeEEEEEecCchHHHHHH
Confidence 6543332 1 1111 1233222333466677666555444
No 285
>PRK07667 uridine kinase; Provisional
Probab=96.73 E-value=0.0025 Score=53.89 Aligned_cols=37 Identities=24% Similarity=0.416 Sum_probs=28.9
Q ss_pred HHHHHHHhhc--cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 166 FDDVWRCIIE--EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 166 ~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
++.|.+.+.. +...+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455555544 345799999999999999999998876
No 286
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=96.72 E-value=0.011 Score=53.36 Aligned_cols=123 Identities=24% Similarity=0.258 Sum_probs=67.7
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEE-------------------EEEEecCC----CCh----------
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIV-------------------IWVVVSKD----LNL---------- 223 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~-------------------~wv~vs~~----~~~---------- 223 (347)
...++++.|+.|+|||||.+.+.... + ...+. .++.-... .+.
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl~-~---p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l 105 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGLL-K---PTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARL 105 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCc-C---CCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHH
Confidence 45799999999999999999998866 1 12222 22211111 111
Q ss_pred --------HHHHHHHHHhcCCCCcc---ccccCh-HHHHHHHHHHhcCCcEEEEEeCCCCccc------ccccccCCCCC
Q 038882 224 --------EKVQEDIGKKIDLFSES---WKNKSL-VEKSCAIFKILSNKKFVLLLDDVWEPVD------LTKVGVPIPNS 285 (347)
Q Consensus 224 --------~~~~~~i~~~l~~~~~~---~~~~~~-~~~~~~l~~~l~~kr~LlVlDdv~~~~~------~~~l~~~l~~~ 285 (347)
.+-..++++.++..... ....+. ....-.+...|-.++-+++||+--+.-| ..++...+. .
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~-~ 184 (293)
T COG1131 106 YGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELA-K 184 (293)
T ss_pred hCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHH-h
Confidence 23444566666654311 111121 2223345566677889999999865422 112222221 1
Q ss_pred CCCcEEEEecCChhHHhhc
Q 038882 286 TNASKVLFTTRYKEVCGKM 304 (347)
Q Consensus 286 ~~gs~iiiTtR~~~v~~~~ 304 (347)
..+..|++||....-...+
T Consensus 185 ~g~~tvlissH~l~e~~~~ 203 (293)
T COG1131 185 EGGVTILLSTHILEEAEEL 203 (293)
T ss_pred CCCcEEEEeCCcHHHHHHh
Confidence 1226799999987765543
No 287
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.72 E-value=0.0047 Score=53.83 Aligned_cols=58 Identities=26% Similarity=0.325 Sum_probs=37.1
Q ss_pred hHHHHHHHhhc--cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCCh
Q 038882 165 IFDDVWRCIIE--EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNL 223 (347)
Q Consensus 165 ~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 223 (347)
+...+++.+.. .+..+|+|.|+||+|||||...+...+ ....+--.++-|.-|.+++=
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~-~~~g~~VaVlAVDPSSp~tG 73 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL-RERGKRVAVLAVDPSSPFTG 73 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH-HHTT--EEEEEE-GGGGCC-
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH-hhcCCceEEEEECCCCCCCC
Confidence 34455555544 367899999999999999999999888 44444445556665665543
No 288
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.72 E-value=0.0027 Score=55.06 Aligned_cols=88 Identities=20% Similarity=0.181 Sum_probs=54.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCC-CCEEEEEEecCCCChHHHHHHHHHhcCCCCc-------------ccc
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHD-FDIVIWVVVSKDLNLEKVQEDIGKKIDLFSE-------------SWK 242 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~-f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-------------~~~ 242 (347)
...++.|.|.+|+|||+|+.++.... ... =+.++|++...+ ..++.+.+- .++..-. ...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~---~~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNG---LKNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH---HHHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHh---hhhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEecccc
Confidence 56899999999999999999877554 122 345677776543 455544433 3332100 000
Q ss_pred -----ccChHHHHHHHHHHhcC-CcEEEEEeCCC
Q 038882 243 -----NKSLVEKSCAIFKILSN-KKFVLLLDDVW 270 (347)
Q Consensus 243 -----~~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 270 (347)
..+...+...+.+.++. +...+|+|.+.
T Consensus 92 ~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 92 RIGWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp GST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred cccccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 34566777777777765 56899999873
No 289
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.71 E-value=0.0015 Score=45.29 Aligned_cols=23 Identities=43% Similarity=0.749 Sum_probs=20.5
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+|.|.|.+|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 290
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.70 E-value=0.0031 Score=52.56 Aligned_cols=23 Identities=48% Similarity=0.652 Sum_probs=20.9
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.|.|.|.+|+||||+|+.+.+.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 291
>PRK14527 adenylate kinase; Provisional
Probab=96.68 E-value=0.0028 Score=53.46 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.3
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+|.|+|++|+||||+|+.++..+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998776
No 292
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.04 Score=54.43 Aligned_cols=163 Identities=16% Similarity=0.086 Sum_probs=86.0
Q ss_pred cccchhhhHHHHHHHhhcc-------------CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChH
Q 038882 158 RIIGQESIFDDVWRCIIEE-------------QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLE 224 (347)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~~-------------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 224 (347)
++-|..+..+-|.+.+.-+ ...=|.++|++|+|||.||..+.... . .-+|++-.+
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~-----~---~~fisvKGP---- 735 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS-----N---LRFISVKGP---- 735 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC-----C---eeEEEecCH----
Confidence 3445555555555554432 23568899999999999999997654 1 124444432
Q ss_pred HHHHHHHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCc-------------ccccccccCCC--CCCCCc
Q 038882 225 KVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEP-------------VDLTKVGVPIP--NSTNAS 289 (347)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-------------~~~~~l~~~l~--~~~~gs 289 (347)
+++.... ..+++.....+.+.-.-++|+|.||++++. ....+++..+. .+-.|-
T Consensus 736 ----ElL~KyI-------GaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV 804 (952)
T KOG0735|consen 736 ----ELLSKYI-------GASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGV 804 (952)
T ss_pred ----HHHHHHh-------cccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceE
Confidence 2222211 122333333344444569999999999764 11233333332 123455
Q ss_pred EEEE-ecCChhHH-hhcCC---CceeecCCCCHHHHHHHHhhhhC------hhhHHHHHHHhCCc
Q 038882 290 KVLF-TTRYKEVC-GKMEA---HKKLRVECLTADEAWMLFNVKVG------EDTIDKIFVKCCCH 343 (347)
Q Consensus 290 ~iii-TtR~~~v~-~~~~~---~~~~~l~~L~~~ea~~Lf~~~~~------~~~~~~I~~~~~G~ 343 (347)
-|+- |||..-+- ..+.+ ++.+.-+.-+..+-.++|+.... .-.++.++.++.|.
T Consensus 805 ~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~ 869 (952)
T KOG0735|consen 805 YILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGF 869 (952)
T ss_pred EEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCC
Confidence 5554 55543221 11222 23344455566677777765542 22355566666654
No 293
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.68 E-value=0.0046 Score=60.87 Aligned_cols=73 Identities=25% Similarity=0.384 Sum_probs=51.0
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKI 256 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 256 (347)
.-+++.++|++|+||||||.-++++. .| .++=|+.|..-+...+-..|...+.... .
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa-----GY-sVvEINASDeRt~~~v~~kI~~avq~~s-----------------~ 381 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA-----GY-SVVEINASDERTAPMVKEKIENAVQNHS-----------------V 381 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc-----Cc-eEEEecccccccHHHHHHHHHHHHhhcc-----------------c
Confidence 46799999999999999999998764 22 3556677777666666666655543211 1
Q ss_pred h--cCCcEEEEEeCCCCc
Q 038882 257 L--SNKKFVLLLDDVWEP 272 (347)
Q Consensus 257 l--~~kr~LlVlDdv~~~ 272 (347)
+ .+++.-||+|+++..
T Consensus 382 l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 382 LDADSRPVCLVIDEIDGA 399 (877)
T ss_pred cccCCCcceEEEecccCC
Confidence 2 257778899998654
No 294
>PRK05439 pantothenate kinase; Provisional
Probab=96.68 E-value=0.017 Score=52.36 Aligned_cols=83 Identities=20% Similarity=0.087 Sum_probs=44.4
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHH
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFK 255 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 255 (347)
...-+|+|.|.+|+||||+|+.+.... .....-..+.-++...-+.....+..- .+......+...+...+...|..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l-~~~~~~~~v~vi~~DdFy~~~~~l~~~--~l~~~kg~Pes~D~~~l~~~L~~ 160 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL-SRWPEHPKVELVTTDGFLYPNAVLEER--GLMKRKGFPESYDMRALLRFLSD 160 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH-HhhCCCCceEEEeccccccCHHHHhhh--hccccCCCcccccHHHHHHHHHH
Confidence 356799999999999999999988765 211111233444444433333332211 11000111234455666666666
Q ss_pred HhcCCc
Q 038882 256 ILSNKK 261 (347)
Q Consensus 256 ~l~~kr 261 (347)
...++.
T Consensus 161 Lk~G~~ 166 (311)
T PRK05439 161 VKSGKP 166 (311)
T ss_pred HHcCCC
Confidence 555554
No 295
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.68 E-value=0.013 Score=52.39 Aligned_cols=39 Identities=33% Similarity=0.440 Sum_probs=28.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEec
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVS 218 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs 218 (347)
+.+++.++|++|+||||++..++... . ..-..+.+++..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l-~--~~g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL-K--KQGKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-H--hcCCEEEEEeCC
Confidence 35799999999999999999998776 2 222355556544
No 296
>PRK06762 hypothetical protein; Provisional
Probab=96.67 E-value=0.0017 Score=53.36 Aligned_cols=25 Identities=44% Similarity=0.655 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+|.|.|++|+||||+|+.+....
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3688999999999999999998765
No 297
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.0028 Score=61.08 Aligned_cols=129 Identities=17% Similarity=0.189 Sum_probs=75.4
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKI 256 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 256 (347)
...=|.+||++|+|||-||+.++|.. ..+| +++-.+ +++ +. +-..++....+.+++.
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGP----ELl----Nk-------YVGESErAVR~vFqRA 600 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGP----ELL----NK-------YVGESERAVRQVFQRA 600 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCH----HHH----HH-------HhhhHHHHHHHHHHHh
Confidence 35667899999999999999999976 5555 223221 111 11 1122333333444444
Q ss_pred hcCCcEEEEEeCCCCc-------c------cccccccCCCC--CCCCcEEEEecCChhHHh--hcCC---CceeecCCCC
Q 038882 257 LSNKKFVLLLDDVWEP-------V------DLTKVGVPIPN--STNASKVLFTTRYKEVCG--KMEA---HKKLRVECLT 316 (347)
Q Consensus 257 l~~kr~LlVlDdv~~~-------~------~~~~l~~~l~~--~~~gs~iiiTtR~~~v~~--~~~~---~~~~~l~~L~ 316 (347)
=..-+|+|.||.++.. . ....++.-+.. ...|--||-.|..+++.. .+.+ ...+-++.-+
T Consensus 601 R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn 680 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPN 680 (802)
T ss_pred hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCC
Confidence 4568999999999764 1 12233333321 234555666776666532 2222 3456677777
Q ss_pred HHHHHHHHhhhh
Q 038882 317 ADEAWMLFNVKV 328 (347)
Q Consensus 317 ~~ea~~Lf~~~~ 328 (347)
.+|-.++++...
T Consensus 681 ~~eR~~ILK~~t 692 (802)
T KOG0733|consen 681 AEERVAILKTIT 692 (802)
T ss_pred HHHHHHHHHHHh
Confidence 888888887654
No 298
>PRK03839 putative kinase; Provisional
Probab=96.65 E-value=0.0017 Score=54.28 Aligned_cols=23 Identities=57% Similarity=0.767 Sum_probs=21.2
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.|.|.|++|+||||+++.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999876
No 299
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.64 E-value=0.0019 Score=55.39 Aligned_cols=26 Identities=38% Similarity=0.597 Sum_probs=23.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+..+|+|.|.+|+|||||++.+....
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998865
No 300
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.63 E-value=0.0018 Score=54.24 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+.++|.|.|++|+||||+++.+...+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998765
No 301
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.63 E-value=0.0075 Score=57.20 Aligned_cols=88 Identities=24% Similarity=0.281 Sum_probs=50.3
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhc-----CCCCccccccC------
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKI-----DLFSESWKNKS------ 245 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l-----~~~~~~~~~~~------ 245 (347)
....++|+|..|+|||||++.+.... .....+++..-....++.++....+... ..-.. .+.+
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~q--sd~~~~~r~~ 237 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVAT--SDESPMMRRL 237 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEc--CCCCHHHHHH
Confidence 45689999999999999998887543 2233455544333445555444433322 11000 0111
Q ss_pred hHHHHHHHHHHh--cCCcEEEEEeCCC
Q 038882 246 LVEKSCAIFKIL--SNKKFVLLLDDVW 270 (347)
Q Consensus 246 ~~~~~~~l~~~l--~~kr~LlVlDdv~ 270 (347)
.......+.+++ +++..||++||+-
T Consensus 238 ~~~~a~~iAEyfrd~G~~Vll~~DslT 264 (450)
T PRK06002 238 APLTATAIAEYFRDRGENVLLIVDSVT 264 (450)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchH
Confidence 112223355555 4789999999984
No 302
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.041 Score=47.60 Aligned_cols=145 Identities=16% Similarity=0.222 Sum_probs=81.0
Q ss_pred ccc-hhhhHHHHHHHhhc-------------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChH
Q 038882 159 IIG-QESIFDDVWRCIIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLE 224 (347)
Q Consensus 159 ~vG-R~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 224 (347)
++| -++.+.+|.+.+.- .+.+-+.++|++|.|||-||+.+++.. ++-|+.+|..
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht--------~c~firvsgs---- 215 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGS---- 215 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechH----
Confidence 454 46666666655432 256778899999999999999998764 3445666653
Q ss_pred HHHHHHHHhcCCCCccccccChHHHHHHHHHHh-cCCcEEEEEeCCCCcc----------c------ccccccCCC--CC
Q 038882 225 KVQEDIGKKIDLFSESWKNKSLVEKSCAIFKIL-SNKKFVLLLDDVWEPV----------D------LTKVGVPIP--NS 285 (347)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~----------~------~~~l~~~l~--~~ 285 (347)
++.+..... ...+...|.-.. ..-+.+|..|++++.. + .-+++..+. ..
T Consensus 216 ----elvqk~ige--------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea 283 (404)
T KOG0728|consen 216 ----ELVQKYIGE--------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA 283 (404)
T ss_pred ----HHHHHHhhh--------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc
Confidence 122221110 011222222222 2467888888886531 0 111222221 13
Q ss_pred CCCcEEEEecCChhHHhh--cCC---CceeecCCCCHHHHHHHHhhh
Q 038882 286 TNASKVLFTTRYKEVCGK--MEA---HKKLRVECLTADEAWMLFNVK 327 (347)
Q Consensus 286 ~~gs~iiiTtR~~~v~~~--~~~---~~~~~l~~L~~~ea~~Lf~~~ 327 (347)
.++-+||+.|..-++... +.+ ...++.++-+.+.-.++++-+
T Consensus 284 tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkih 330 (404)
T KOG0728|consen 284 TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIH 330 (404)
T ss_pred ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHh
Confidence 456789988876655322 222 345777777777777777644
No 303
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.63 E-value=0.0055 Score=51.16 Aligned_cols=23 Identities=48% Similarity=0.881 Sum_probs=21.3
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999876
No 304
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.61 E-value=0.01 Score=56.58 Aligned_cols=91 Identities=21% Similarity=0.323 Sum_probs=58.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCC-ChHHHHHHHHHhcCCCCcc----ccccC------
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDL-NLEKVQEDIGKKIDLFSES----WKNKS------ 245 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~----~~~~~------ 245 (347)
....++|.|.+|+|||||+.++.... .. .+-+.++++-+.+.. ...++..++...-...... ..+.+
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~-~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNI-SK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHH-Hh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 56789999999999999999998876 22 256777787776654 4566666665432111000 01111
Q ss_pred hHHHHHHHHHHh---cCCcEEEEEeCC
Q 038882 246 LVEKSCAIFKIL---SNKKFVLLLDDV 269 (347)
Q Consensus 246 ~~~~~~~l~~~l---~~kr~LlVlDdv 269 (347)
.......+.+++ ++++.||++|++
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccc
Confidence 122334566666 378999999999
No 305
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.005 Score=53.57 Aligned_cols=90 Identities=17% Similarity=0.240 Sum_probs=55.3
Q ss_pred cccchhhhHHHHHHHhhc-------------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChH
Q 038882 158 RIIGQESIFDDVWRCIIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLE 224 (347)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 224 (347)
++=|-.+.+++|.+...- +..+-|.++|++|.|||-+|+.++|+. ...| +.|-.
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt---dacf-----irvig----- 244 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT---DACF-----IRVIG----- 244 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc---CceE-----Eeehh-----
Confidence 445677777777766543 256778899999999999999999865 3333 33211
Q ss_pred HHHHHHHHhcCCCCccccccChHHHHHHHHHHhcC-CcEEEEEeCCCC
Q 038882 225 KVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSN-KKFVLLLDDVWE 271 (347)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~ 271 (347)
.++.+..-. ....+...|.+..+. |-|+|.||.++.
T Consensus 245 ---selvqkyvg--------egarmvrelf~martkkaciiffdeida 281 (435)
T KOG0729|consen 245 ---SELVQKYVG--------EGARMVRELFEMARTKKACIIFFDEIDA 281 (435)
T ss_pred ---HHHHHHHhh--------hhHHHHHHHHHHhcccceEEEEeecccc
Confidence 122222111 112334445555454 669999999854
No 306
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.61 E-value=0.0052 Score=54.71 Aligned_cols=24 Identities=42% Similarity=0.401 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+.|.|.|.||+||||+|+.+....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 578999999999999999999876
No 307
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.59 E-value=0.0025 Score=55.37 Aligned_cols=23 Identities=48% Similarity=0.616 Sum_probs=20.9
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.|.|.|++|+||||+|+.+...+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999998876
No 308
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.59 E-value=0.02 Score=52.04 Aligned_cols=88 Identities=15% Similarity=0.161 Sum_probs=53.7
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCcc---ccccChHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSES---WKNKSLVEKSCAI 253 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 253 (347)
..+++-|+|+.|+||||||..+.... +..-..++|+.....+++.. +..++...+. ....+.++.....
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~---q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEA---QKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH---HHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhh---hcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHH
Confidence 45799999999999999999988765 33346788999888766533 3334432111 1123445555666
Q ss_pred HHHhcCC-cEEEEEeCCCCc
Q 038882 254 FKILSNK-KFVLLLDDVWEP 272 (347)
Q Consensus 254 ~~~l~~k-r~LlVlDdv~~~ 272 (347)
..+++.. --++|+|.|-..
T Consensus 124 e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT-
T ss_pred HHHhhcccccEEEEecCccc
Confidence 6666543 458899998654
No 309
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.59 E-value=0.014 Score=49.87 Aligned_cols=26 Identities=38% Similarity=0.484 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|.|..|.|||||++.+....
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45799999999999999999998654
No 310
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.58 E-value=0.0043 Score=57.49 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=61.3
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKI 256 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 256 (347)
....+.|.|+.|.||||+++.+.+.. ..+....++. +.++.. ...... ..+-... . ...+.......++..
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~t-iEdp~E--~~~~~~-~~~i~q~-e-vg~~~~~~~~~l~~~ 191 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIIT-IEDPIE--YVHRNK-RSLINQR-E-VGLDTLSFANALRAA 191 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEE-EcCChh--hhccCc-cceEEcc-c-cCCCCcCHHHHHHHh
Confidence 35789999999999999999988765 3333444443 222111 110000 0000000 0 011122345667778
Q ss_pred hcCCcEEEEEeCCCCcccccccccCCCCCCCCcEEEEecCChh
Q 038882 257 LSNKKFVLLLDDVWEPVDLTKVGVPIPNSTNASKVLFTTRYKE 299 (347)
Q Consensus 257 l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~ 299 (347)
|+..+=.|++|++.+.+.+...... ...|..++.|....+
T Consensus 192 lr~~pd~i~vgEird~~~~~~~l~a---a~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 192 LREDPDVILIGEMRDLETVELALTA---AETGHLVFGTLHTNS 231 (343)
T ss_pred hccCCCEEEEeCCCCHHHHHHHHHH---HHcCCcEEEEEcCCC
Confidence 8889999999999766555432221 234555666665543
No 311
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.58 E-value=0.0049 Score=61.36 Aligned_cols=74 Identities=15% Similarity=0.212 Sum_probs=56.4
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
+.++|.++.++.|...+... +.+.++|++|+||||+|+.+.... ...+++..+|..- ...+...+++.+..+++
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l--~~~~~~~~~~~~n-p~~~~~~~~~~v~~~~G 104 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELL--PKEELQDILVYPN-PEDPNNPKIRTVPAGKG 104 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHc--ChHhHHHheEeeC-CCcchHHHHHHHHHhcC
Confidence 56899999999888877765 478899999999999999998875 2334577778655 44467777777776664
No 312
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.57 E-value=0.0031 Score=61.87 Aligned_cols=46 Identities=26% Similarity=0.346 Sum_probs=39.3
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..++|.+..++.+...+.......+.|+|++|+|||++|+.+++..
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999888776666778899999999999999998753
No 313
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.57 E-value=0.01 Score=50.01 Aligned_cols=91 Identities=18% Similarity=0.220 Sum_probs=48.2
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhhhccCCCC--------CEEEEEEecCCCChHHHHHHHHHhcCCCCc----------
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDF--------DIVIWVVVSKDLNLEKVQEDIGKKIDLFSE---------- 239 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f--------~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------- 239 (347)
..+..|.|++|+|||+++..+.... .....| ..++|++.... ...+.+.+.........
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~-~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~~~~~~~~~~~~~~~~~~~ 108 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAAL-ATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLRALLQDYDDDANLFFVDLS 108 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHH-HT---TT---------EEEEESSS---HHHHHHHHHHHHTTS-HHHHHHHHHH-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH-HhCCccCCcccccCceEEEEeccCC--HHHHHHHHHHHhcccCCccceEEeecc
Confidence 3588999999999999999998887 322222 36778776655 33333333322211100
Q ss_pred ----------cccccChHHHHHHHHHHhcC--CcEEEEEeCCCC
Q 038882 240 ----------SWKNKSLVEKSCAIFKILSN--KKFVLLLDDVWE 271 (347)
Q Consensus 240 ----------~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~ 271 (347)
.............+.+.+.. +.-++|+|++..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~ 152 (193)
T PF13481_consen 109 NWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQS 152 (193)
T ss_dssp -E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGG
T ss_pred ccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHH
Confidence 00001123345566666655 467999998743
No 314
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.57 E-value=0.0084 Score=59.69 Aligned_cols=74 Identities=18% Similarity=0.210 Sum_probs=50.4
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
+.++|.++.++.+...+.... .+.++|++|+||||+++.+.+.. . ...|...+++.- ...+...+++.+..+++
T Consensus 18 ~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l-~-~~~~~~~~~~~n-~~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELL-P-DEELEDILVYPN-PEDPNMPRIVEVPAGEG 91 (608)
T ss_pred hhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHc-C-chhheeEEEEeC-CCCCchHHHHHHHHhhc
Confidence 567999998888887777653 56699999999999999999876 2 223344443322 22344555666665553
No 315
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.57 E-value=0.0097 Score=52.84 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=30.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecC
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSK 219 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 219 (347)
...++.|.|.+|+|||+|+.+++... ...-..++|++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~---a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQ---ASRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhCCCcEEEEEecC
Confidence 46799999999999999999987654 12234677888764
No 316
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.54 E-value=0.018 Score=51.03 Aligned_cols=94 Identities=13% Similarity=0.180 Sum_probs=58.4
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhc--cCCCCCEEEEEEecCCC-ChHHHHHHHHHhcCCCCcc----ccccCh---
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCH--ERHDFDIVIWVVVSKDL-NLEKVQEDIGKKIDLFSES----WKNKSL--- 246 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~--~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~--- 246 (347)
....++|.|-.|+|||+|+..+.++. . .+.+-+.++++-+.+.. ...+++.++...=...... ..+.+.
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~-~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r 146 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQA-GVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIER 146 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhh-hccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHH
Confidence 45788999999999999999988765 2 12234678888887764 4566666665432111000 001111
Q ss_pred ---HHHHHHHHHHhc---CCcEEEEEeCCCC
Q 038882 247 ---VEKSCAIFKILS---NKKFVLLLDDVWE 271 (347)
Q Consensus 247 ---~~~~~~l~~~l~---~kr~LlVlDdv~~ 271 (347)
......+.++++ +++.|+++||+-.
T Consensus 147 ~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 147 IITPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 122234556653 6899999999844
No 317
>PRK14974 cell division protein FtsY; Provisional
Probab=96.54 E-value=0.028 Score=51.66 Aligned_cols=57 Identities=21% Similarity=0.288 Sum_probs=35.4
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCC-CChHHHHHHHHHhcCC
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKD-LNLEKVQEDIGKKIDL 236 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~ 236 (347)
+..++.++|++|+||||++..++... .. ..+ .++.+..... ....+-++.....++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l-~~-~g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv 196 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL-KK-NGF-SVVIAAGDTFRAGAIEQLEEHAERLGV 196 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-HH-cCC-eEEEecCCcCcHHHHHHHHHHHHHcCC
Confidence 46799999999999999998888766 32 223 3333433211 1233345556666654
No 318
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.53 E-value=0.0048 Score=48.60 Aligned_cols=38 Identities=29% Similarity=0.356 Sum_probs=29.2
Q ss_pred hHHHHHHHhhc--cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 165 IFDDVWRCIIE--EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 165 ~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+..++.+.|.. ....+|.+.|..|+|||||++.++...
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 44455555543 245699999999999999999999876
No 319
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.53 E-value=0.02 Score=55.67 Aligned_cols=99 Identities=15% Similarity=0.070 Sum_probs=62.0
Q ss_pred HHHHHHhhc--cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCcc----
Q 038882 167 DDVWRCIIE--EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSES---- 240 (347)
Q Consensus 167 ~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---- 240 (347)
..|-+.|.. ....++.|.|++|+|||||+.+++... ..+-..+++++..+ +..++.+.. ..++.....
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~---~~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~ 323 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENA---CANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQ 323 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhC
Confidence 334444443 256899999999999999999998876 22334567766544 455655553 444432111
Q ss_pred ---------ccccChHHHHHHHHHHhcC-CcEEEEEeCCCC
Q 038882 241 ---------WKNKSLVEKSCAIFKILSN-KKFVLLLDDVWE 271 (347)
Q Consensus 241 ---------~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~ 271 (347)
+.....++....+.+.++. +.-.+|+|.+..
T Consensus 324 g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~ 364 (484)
T TIGR02655 324 GLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSA 364 (484)
T ss_pred CcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 1122345666677776654 667899999853
No 320
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.53 E-value=0.02 Score=50.09 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.3
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+..|+|++|+|||+|+..++-..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999998765
No 321
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.52 E-value=0.014 Score=54.89 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..++.++|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 322
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.52 E-value=0.011 Score=52.47 Aligned_cols=104 Identities=18% Similarity=0.250 Sum_probs=57.8
Q ss_pred cchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCc
Q 038882 160 IGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSE 239 (347)
Q Consensus 160 vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 239 (347)
.|...+..+.+..+......++.|.|..|.||||+++.+.... ...-..++.+.-+..+.... ..++..
T Consensus 62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i---~~~~~~iitiEdp~E~~~~~-----~~q~~v--- 130 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSEL---NTPEKNIITVEDPVEYQIPG-----INQVQV--- 130 (264)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhh---CCCCCeEEEECCCceecCCC-----ceEEEe---
Confidence 4444443333344444456789999999999999999887765 11112233322111111111 011111
Q ss_pred cccccChHHHHHHHHHHhcCCcEEEEEeCCCCccccc
Q 038882 240 SWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPVDLT 276 (347)
Q Consensus 240 ~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~ 276 (347)
...........++..++..+=.|+++++.+.+...
T Consensus 131 --~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~ 165 (264)
T cd01129 131 --NEKAGLTFARGLRAILRQDPDIIMVGEIRDAETAE 165 (264)
T ss_pred --CCcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHH
Confidence 11111235566777888889999999997775544
No 323
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.51 E-value=0.073 Score=48.52 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=28.0
Q ss_pred eeecCCCCHHHHHHHHhhhhC----------hhhHHHHHHHhCCccc
Q 038882 309 KLRVECLTADEAWMLFNVKVG----------EDTIDKIFVKCCCHTF 345 (347)
Q Consensus 309 ~~~l~~L~~~ea~~Lf~~~~~----------~~~~~~I~~~~~G~PL 345 (347)
++++++++.+|+..++.-... +...+++.-..+|+|-
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~ 304 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPR 304 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHH
Confidence 789999999999999986542 2245556666799984
No 324
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.51 E-value=0.0072 Score=61.42 Aligned_cols=46 Identities=20% Similarity=0.318 Sum_probs=37.0
Q ss_pred CcccchhhhHHHHHHHhhc--cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 157 PRIIGQESIFDDVWRCIIE--EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..++|+...+..+.+.+.. .....|.|+|..|+|||++|+.+++..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 3589998888888766653 344688999999999999999998764
No 325
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.51 E-value=0.0028 Score=49.26 Aligned_cols=27 Identities=48% Similarity=0.604 Sum_probs=19.1
Q ss_pred EEEEeCCCCchHHHHHHHHHhhhccCCCCC
Q 038882 181 IGLYGAGGVGKTTLLKQLNNKLCHERHDFD 210 (347)
Q Consensus 181 i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~ 210 (347)
|.|+|.+|+|||++|+.++... ...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCcee
Confidence 6799999999999999999876 55664
No 326
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.51 E-value=0.013 Score=53.80 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.1
Q ss_pred EEEEeCCCCchHHHHHHHHHhh
Q 038882 181 IGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 181 i~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+.+.|++|+||||+++.+.+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999876
No 327
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.50 E-value=0.014 Score=48.14 Aligned_cols=70 Identities=17% Similarity=0.177 Sum_probs=42.0
Q ss_pred ccchhhhHHHHHHHhhc--cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHH
Q 038882 159 IIGQESIFDDVWRCIIE--EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGK 232 (347)
Q Consensus 159 ~vGR~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 232 (347)
++|....+.++.+.+.. .....|.|+|..|+||+.+|+.+++.- ...-..-+-|+++. .+.+.+-.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s---~r~~~pfi~vnc~~-~~~~~~e~~LFG 72 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS---PRKNGPFISVNCAA-LPEELLESELFG 72 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS---TTTTS-EEEEETTT-S-HHHHHHHHHE
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh---hcccCCeEEEehhh-hhcchhhhhhhc
Confidence 46777778887777654 334677799999999999999998854 11222234444443 244444445543
No 328
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.50 E-value=0.014 Score=55.47 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
....++|+|++|.||||||+.+..-+
T Consensus 361 ~G~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 361 AGEALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred CCceEEEECCCCccHHHHHHHHHccc
Confidence 45789999999999999999997755
No 329
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.50 E-value=0.0073 Score=56.63 Aligned_cols=47 Identities=28% Similarity=0.333 Sum_probs=38.8
Q ss_pred CCcccchhhhHHHHHHHhhcc--------------CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 156 EPRIIGQESIFDDVWRCIIEE--------------QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~~--------------~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...++|.++..+.+..++... ....|.++|++|+|||+||+.+....
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 356899999999888877541 13678999999999999999998876
No 330
>PRK05973 replicative DNA helicase; Provisional
Probab=96.49 E-value=0.025 Score=49.28 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=34.4
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDI 230 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 230 (347)
...++.|.|.+|+|||+++.++.... . ..-..+++++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~-a--~~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEA-M--KSGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH-H--hcCCeEEEEEEeCC--HHHHHHHH
Confidence 35789999999999999999987765 2 22345677766553 45555544
No 331
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.49 E-value=0.014 Score=53.08 Aligned_cols=26 Identities=35% Similarity=0.630 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|.|+.|.|||||.+.+....
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl~ 52 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGYL 52 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999999998764
No 332
>PTZ00494 tuzin-like protein; Provisional
Probab=96.49 E-value=0.091 Score=49.53 Aligned_cols=163 Identities=12% Similarity=0.064 Sum_probs=96.4
Q ss_pred CCcccchhhhHHHHHHHhhc---cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHH
Q 038882 156 EPRIIGQESIFDDVWRCIIE---EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGK 232 (347)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 232 (347)
...++.|+.+-..+.+.|.+ .+.+++.+.|.-|.|||+|.+...... . -..++|.+... ++.++.+.+
T Consensus 370 ~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE-~-----~paV~VDVRg~---EDtLrsVVK 440 (664)
T PTZ00494 370 EAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE-G-----VALVHVDVGGT---EDTLRSVVR 440 (664)
T ss_pred cccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc-C-----CCeEEEEecCC---cchHHHHHH
Confidence 36789998887766666654 478999999999999999999887654 1 23466776554 556888888
Q ss_pred hcCCCCccccccChHHHHHHH---HHHhcCCcEEEEEe--CCCCc-ccccccccCCCCCCCCcEEEEecCChhHHhh---
Q 038882 233 KIDLFSESWKNKSLVEKSCAI---FKILSNKKFVLLLD--DVWEP-VDLTKVGVPIPNSTNASKVLFTTRYKEVCGK--- 303 (347)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~~l---~~~l~~kr~LlVlD--dv~~~-~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~--- 303 (347)
.++.++-+.-.+-.+-..+.. .....++.-+||+- +=.+. ..+.+. ..|.....-|+|++----+.+...
T Consensus 441 ALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EVplESLT~~n~~ 519 (664)
T PTZ00494 441 ALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMKALTPLNVS 519 (664)
T ss_pred HhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeechHhhhchhhcc
Confidence 888754322122122222222 22234555566653 21111 111111 112223345677765544433211
Q ss_pred cCCCceeecCCCCHHHHHHHHhhhh
Q 038882 304 MEAHKKLRVECLTADEAWMLFNVKV 328 (347)
Q Consensus 304 ~~~~~~~~l~~L~~~ea~~Lf~~~~ 328 (347)
+..-..|.++++|..+|.++-++..
T Consensus 520 LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 520 SRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred CccceeEecCCcCHHHHHHHHhccc
Confidence 1112478899999999999998865
No 333
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.48 E-value=0.01 Score=56.05 Aligned_cols=89 Identities=20% Similarity=0.274 Sum_probs=54.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCC-hHHHHHHHHHhcCCCCcc----ccccCh-----
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLN-LEKVQEDIGKKIDLFSES----WKNKSL----- 246 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~----~~~~~~----- 246 (347)
....++|+|..|+|||||++.++... ..+.++..-+.+... ..++.++++..-+..... ..+.+.
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 45789999999999999999987643 225666666766543 455666654432211100 011111
Q ss_pred -HHHHHHHHHHh--cCCcEEEEEeCCC
Q 038882 247 -VEKSCAIFKIL--SNKKFVLLLDDVW 270 (347)
Q Consensus 247 -~~~~~~l~~~l--~~kr~LlVlDdv~ 270 (347)
......+.+++ ++++.||++||+-
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslT 262 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLT 262 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChH
Confidence 12223355655 5799999999984
No 334
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.47 E-value=0.0051 Score=54.52 Aligned_cols=60 Identities=27% Similarity=0.388 Sum_probs=43.9
Q ss_pred HHHHHHhhc--cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHH
Q 038882 167 DDVWRCIIE--EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQ 227 (347)
Q Consensus 167 ~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 227 (347)
.+|+..+.. ++..+|+|.|.||+|||||.-.+...+ ....+--.++-|.-|.+++--.++
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCcccc
Confidence 345555544 467799999999999999999998887 555665566677777777655444
No 335
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.47 E-value=0.0021 Score=48.74 Aligned_cols=22 Identities=50% Similarity=0.850 Sum_probs=19.8
Q ss_pred EEEEeCCCCchHHHHHHHHHhh
Q 038882 181 IGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 181 i~I~G~~GiGKTtLa~~v~~~~ 202 (347)
|-|+|.+|+|||+||+.++...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988876
No 336
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.47 E-value=0.021 Score=53.24 Aligned_cols=26 Identities=42% Similarity=0.617 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..++|+++|++|+||||++..++...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 34799999999999999999998876
No 337
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.47 E-value=0.008 Score=53.41 Aligned_cols=89 Identities=17% Similarity=0.141 Sum_probs=58.6
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCC------------------
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLF------------------ 237 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~------------------ 237 (347)
+..+++.|+|.+|+|||+++.++.... ......++||+.... ..++.+...+ ++..
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~--~~~l~~~~~~-~g~d~~~~~~~g~l~i~d~~~~ 94 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEES--PEELLENARS-FGWDLEVYIEKGKLAILDAFLS 94 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC--HHHHHHHHHH-cCCCHHHHhhcCCEEEEEcccc
Confidence 356899999999999999999998876 455888999988764 3444444432 2110
Q ss_pred -Cc-----cccccChHHHHHHHHHHhcC-CcEEEEEeCCC
Q 038882 238 -SE-----SWKNKSLVEKSCAIFKILSN-KKFVLLLDDVW 270 (347)
Q Consensus 238 -~~-----~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 270 (347)
.. .....+...+...+.+..+. +..-+|+|.+-
T Consensus 95 ~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~ 134 (260)
T COG0467 95 EKGLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSIT 134 (260)
T ss_pred ccccccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 00 00022445566666666544 47889999985
No 338
>PRK00625 shikimate kinase; Provisional
Probab=96.46 E-value=0.0025 Score=52.90 Aligned_cols=23 Identities=43% Similarity=0.379 Sum_probs=20.9
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.|.++||+|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998875
No 339
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=96.46 E-value=0.017 Score=55.12 Aligned_cols=92 Identities=20% Similarity=0.342 Sum_probs=57.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCC-ChHHHHHHHHHhcCCCCc----cccccCh-----
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDL-NLEKVQEDIGKKIDLFSE----SWKNKSL----- 246 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~----- 246 (347)
....++|.|.+|+|||||+.++.... ... +-+.++++-+.+.. .+.++++++...-..... ...+.+.
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~-~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNI-AKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHH-Hhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 56789999999999999999987765 222 22466777776654 456666666653221100 0011111
Q ss_pred -HHHHHHHHHHh---cCCcEEEEEeCCC
Q 038882 247 -VEKSCAIFKIL---SNKKFVLLLDDVW 270 (347)
Q Consensus 247 -~~~~~~l~~~l---~~kr~LlVlDdv~ 270 (347)
......+.+++ ++++.||++|++-
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchH
Confidence 12234466666 6799999999984
No 340
>PRK04040 adenylate kinase; Provisional
Probab=96.45 E-value=0.003 Score=53.20 Aligned_cols=24 Identities=42% Similarity=0.606 Sum_probs=22.2
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.+|.|+|++|+||||+++.+....
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998876
No 341
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.44 E-value=0.016 Score=55.02 Aligned_cols=89 Identities=20% Similarity=0.272 Sum_probs=54.0
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCC-hHHHHHHHHHhcCCCCc----cccccCh-----
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLN-LEKVQEDIGKKIDLFSE----SWKNKSL----- 246 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~----~~~~~~~----- 246 (347)
....++|+|..|+|||||++.+++.. ..+.++++-+.+... ..++..+.+..-+.... ...+.+.
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 56789999999999999999988754 224555666666543 44555555443221100 0011111
Q ss_pred -HHHHHHHHHHh--cCCcEEEEEeCCC
Q 038882 247 -VEKSCAIFKIL--SNKKFVLLLDDVW 270 (347)
Q Consensus 247 -~~~~~~l~~~l--~~kr~LlVlDdv~ 270 (347)
......+.+++ +++..||++||+-
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslT 258 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVT 258 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcH
Confidence 12233455666 5799999999984
No 342
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.44 E-value=0.0085 Score=55.19 Aligned_cols=63 Identities=24% Similarity=0.354 Sum_probs=47.8
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHH
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQ 227 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 227 (347)
..++|++.....+...+..+ +.+.+.|.+|+|||+||+.++... .. ..++|.+.......++.
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l---~~---~~~~i~~t~~l~p~d~~ 86 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARAL---GL---PFVRIQCTPDLLPSDLL 86 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHh---CC---CeEEEecCCCCCHHHhc
Confidence 34789888888877777664 578899999999999999999876 32 33566676666666654
No 343
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.43 E-value=0.01 Score=56.02 Aligned_cols=90 Identities=26% Similarity=0.287 Sum_probs=51.0
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCcc----ccccCh------
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSES----WKNKSL------ 246 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----~~~~~~------ 246 (347)
....++|.|..|+|||||++.+.... .....++...-.......++.+..+..-+..... ..+.+.
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~----~~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNT----DADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC----CCCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 45789999999999999998887654 2222333222223334555655554432211100 011111
Q ss_pred HHHHHHHHHHh--cCCcEEEEEeCCC
Q 038882 247 VEKSCAIFKIL--SNKKFVLLLDDVW 270 (347)
Q Consensus 247 ~~~~~~l~~~l--~~kr~LlVlDdv~ 270 (347)
......+.+++ +++..||++||+-
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~DslT 240 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSVT 240 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchh
Confidence 11233455666 5789999999984
No 344
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.42 E-value=0.0082 Score=51.07 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (347)
...+++|+|..|.|||||.+.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999875
No 345
>PRK05922 type III secretion system ATPase; Validated
Probab=96.42 E-value=0.017 Score=54.73 Aligned_cols=90 Identities=12% Similarity=0.215 Sum_probs=51.9
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecC-CCChHHHHHHHHHhcCCCCcc----ccccC-----
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSK-DLNLEKVQEDIGKKIDLFSES----WKNKS----- 245 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~----~~~~~----- 245 (347)
.....++|.|..|+|||||.+.+.... ..+...++.++. .....+.+.+........... ..+.+
T Consensus 155 ~~GqrigI~G~nG~GKSTLL~~Ia~~~-----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~ 229 (434)
T PRK05922 155 GKGQRIGVFSEPGSGKSSLLSTIAKGS-----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKV 229 (434)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccC-----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHH
Confidence 355789999999999999999988653 223333333333 233445555554433221100 00111
Q ss_pred -hHHHHHHHHHHh--cCCcEEEEEeCCC
Q 038882 246 -LVEKSCAIFKIL--SNKKFVLLLDDVW 270 (347)
Q Consensus 246 -~~~~~~~l~~~l--~~kr~LlVlDdv~ 270 (347)
.......+.+++ ++++.||++||+-
T Consensus 230 ~a~~~a~tiAEyfrd~G~~VLl~~DslT 257 (434)
T PRK05922 230 IAGRAAMTIAEYFRDQGHRVLFIMDSLS 257 (434)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 112233456666 5799999999984
No 346
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.41 E-value=0.0024 Score=53.42 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.9
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+|.|+|++|+||||+|+.+...+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998765
No 347
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.41 E-value=0.019 Score=49.29 Aligned_cols=88 Identities=23% Similarity=0.432 Sum_probs=53.4
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCC-CChHHHHHHHHHhcCCCCc----cccccChH----
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKD-LNLEKVQEDIGKKIDLFSE----SWKNKSLV---- 247 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~----~~~~~~~~---- 247 (347)
....++|.|.+|+|||+|+..+.+.. .-+.++++.+++. ....++.+++...-..... ...+.+..
T Consensus 14 ~Gqr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~ 88 (215)
T PF00006_consen 14 RGQRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYR 88 (215)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHH
T ss_pred cCCEEEEEcCcccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhh
Confidence 45788999999999999999998875 2344477777765 3456666666433111000 00111111
Q ss_pred --HHHHHHHHHh--cCCcEEEEEeCC
Q 038882 248 --EKSCAIFKIL--SNKKFVLLLDDV 269 (347)
Q Consensus 248 --~~~~~l~~~l--~~kr~LlVlDdv 269 (347)
...-.+.+++ +++..|+++||+
T Consensus 89 ~~~~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 89 APYTALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEEETH
T ss_pred hhccchhhhHHHhhcCCceeehhhhh
Confidence 1112233443 589999999998
No 348
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=96.40 E-value=0.021 Score=52.19 Aligned_cols=89 Identities=20% Similarity=0.280 Sum_probs=51.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecC-CCChHHHHHHHHHhcCCCCcc----ccccC------
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSK-DLNLEKVQEDIGKKIDLFSES----WKNKS------ 245 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~----~~~~~------ 245 (347)
....++|+|..|+|||||++.+.+.. . -+..+...+.. .....++.......-+..... ..+.+
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~----~-~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGT----T-ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC----C-CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 45788999999999999999888754 1 23333344433 345556555555442211000 00111
Q ss_pred hHHHHHHHHHHh--cCCcEEEEEeCCC
Q 038882 246 LVEKSCAIFKIL--SNKKFVLLLDDVW 270 (347)
Q Consensus 246 ~~~~~~~l~~~l--~~kr~LlVlDdv~ 270 (347)
.......+.+++ +++..||++||+-
T Consensus 143 ~~~~a~~~AEyfr~~g~~Vll~~Dslt 169 (326)
T cd01136 143 AAYTATAIAEYFRDQGKDVLLLMDSLT 169 (326)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeccch
Confidence 112223344555 5799999999974
No 349
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.39 E-value=0.0032 Score=51.95 Aligned_cols=25 Identities=36% Similarity=0.379 Sum_probs=22.7
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...|.++|++|+||||+|+.++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 350
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.39 E-value=0.0041 Score=63.55 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (347)
+..++.|+|+.|.|||||.+.+...
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHH
Confidence 3479999999999999999998765
No 351
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.39 E-value=0.023 Score=45.88 Aligned_cols=23 Identities=43% Similarity=0.689 Sum_probs=20.8
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
++.|+|.+|+||||||+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998876
No 352
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.36 E-value=0.19 Score=50.89 Aligned_cols=27 Identities=33% Similarity=0.410 Sum_probs=23.7
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
++...|+|+|..|+|||||++.+..-+
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356799999999999999999997765
No 353
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.36 E-value=0.0036 Score=52.41 Aligned_cols=24 Identities=46% Similarity=0.576 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+.|.+.|.+|+||||+|+++....
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 467889999999999999998876
No 354
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.36 E-value=0.031 Score=52.38 Aligned_cols=59 Identities=19% Similarity=0.202 Sum_probs=34.9
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhhhccC-CCCCEEEEEEecCCC-ChHHHHHHHHHhcCC
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKLCHER-HDFDIVIWVVVSKDL-NLEKVQEDIGKKIDL 236 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~ 236 (347)
.+++.++|+.|+||||.+..++..+.... .+-..+..+++.... ....-++..++.++.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgv 234 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGI 234 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCc
Confidence 47999999999999999999887762111 122344555544321 122224444554544
No 355
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.35 E-value=0.0071 Score=52.24 Aligned_cols=53 Identities=28% Similarity=0.358 Sum_probs=33.1
Q ss_pred EEEEEeCCCCchHHHHHHHHHhhhc----cCCCCCEEEEEEecCCCChHHHHHHHHH
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKLCH----ERHDFDIVIWVVVSKDLNLEKVQEDIGK 232 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~~----~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 232 (347)
+..|+|++|.|||+++..+...... ........+-++...+..+..++..+..
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 7889999999999777666655411 1134445555566666677777777776
No 356
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.35 E-value=0.0032 Score=52.96 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=23.2
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+|+|-||-|+||||||+.+.+..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4689999999999999999999987
No 357
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.34 E-value=0.0076 Score=48.12 Aligned_cols=39 Identities=26% Similarity=0.498 Sum_probs=27.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecC
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSK 219 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 219 (347)
++|.|+|..|+|||||++.+.+.. . +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~-~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-K-RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-H-HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-h-HcCCceEEEEEccC
Confidence 479999999999999999999987 2 24455555555544
No 358
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.015 Score=49.61 Aligned_cols=61 Identities=18% Similarity=0.267 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCCCcccccccc------cCCCCCCCCcEEEEecCChhHHhhcCCCcee
Q 038882 248 EKSCAIFKILSNKKFVLLLDDVWEPVDLTKVG------VPIPNSTNASKVLFTTRYKEVCGKMEAHKKL 310 (347)
Q Consensus 248 ~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~------~~l~~~~~gs~iiiTtR~~~v~~~~~~~~~~ 310 (347)
.....+.+.+-=++-|.|||..++.-+.+.+. ..+ ...|+-+++.|..+.+.....+...+
T Consensus 150 kKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~l--r~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 150 KKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINAL--REEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHH--hcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 33455666666678899999998875555441 122 23467788888888888877655433
No 359
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.34 E-value=0.0056 Score=56.29 Aligned_cols=46 Identities=26% Similarity=0.451 Sum_probs=39.7
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..++|.++.+..|+-.+.++...-+.|.|.+|+|||||++.+..-+
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 4579999999888887877767778899999999999999998765
No 360
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.33 E-value=0.0057 Score=49.52 Aligned_cols=25 Identities=44% Similarity=0.535 Sum_probs=22.7
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+|-|.|.+|+||||||+.+....
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L 26 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL 26 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999999988
No 361
>PRK06217 hypothetical protein; Validated
Probab=96.33 E-value=0.0033 Score=52.71 Aligned_cols=23 Identities=43% Similarity=0.553 Sum_probs=21.2
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.|.|.|.+|+||||||+.+....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999876
No 362
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.33 E-value=0.036 Score=51.43 Aligned_cols=90 Identities=26% Similarity=0.198 Sum_probs=52.6
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCC-ChHHHHHHHHHhcCCCCccccccChHHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDL-NLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFK 255 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 255 (347)
+.+++.++|+.|+||||++..++... ..+. ..+.+++..... ...+-++.....++.+-. ...+..++...+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l-~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~~ 279 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL-LKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQY 279 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHHH
Confidence 45799999999999999999998765 2222 345666654332 234445555565554211 22345555444433
Q ss_pred Hhc-CCcEEEEEeCCCC
Q 038882 256 ILS-NKKFVLLLDDVWE 271 (347)
Q Consensus 256 ~l~-~kr~LlVlDdv~~ 271 (347)
.-. +..=+|++|-.-.
T Consensus 280 l~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 280 MTYVNCVDHILIDTVGR 296 (407)
T ss_pred HHhcCCCCEEEEECCCC
Confidence 321 3445777777633
No 363
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.32 E-value=0.0028 Score=53.80 Aligned_cols=23 Identities=43% Similarity=0.768 Sum_probs=20.7
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+|+|.|++|+|||||++.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998764
No 364
>PRK08149 ATP synthase SpaL; Validated
Probab=96.31 E-value=0.023 Score=53.77 Aligned_cols=89 Identities=15% Similarity=0.250 Sum_probs=52.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCC-CChHHHHHHHHHhcCCCC-----cccccc-----C
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKD-LNLEKVQEDIGKKIDLFS-----ESWKNK-----S 245 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~-----~~~~~~-----~ 245 (347)
....++|+|.+|+|||||+..++... .-+.++...+... .+..++..+......... ...+.. .
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 56789999999999999999887653 2233334444333 345666666655322110 000111 1
Q ss_pred hHHHHHHHHHHh--cCCcEEEEEeCCC
Q 038882 246 LVEKSCAIFKIL--SNKKFVLLLDDVW 270 (347)
Q Consensus 246 ~~~~~~~l~~~l--~~kr~LlVlDdv~ 270 (347)
.......+.+++ ++++.||++||+-
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslT 251 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMT 251 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchH
Confidence 122333455555 5799999999984
No 365
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.31 E-value=0.011 Score=55.29 Aligned_cols=38 Identities=32% Similarity=0.413 Sum_probs=30.9
Q ss_pred hHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 165 IFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 165 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
-.+.+++.+.......+.|.|.||+|||+|.+.+.+..
T Consensus 9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 34555566666667888999999999999999999887
No 366
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.30 E-value=0.0088 Score=59.42 Aligned_cols=55 Identities=24% Similarity=0.257 Sum_probs=35.6
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHH
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGK 232 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 232 (347)
.++..|.|.+|.||||++..+.....+....-...+.+.....-....+.+.+..
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHh
Confidence 4788999999999999999988765221111224566666555555555554443
No 367
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.29 E-value=0.1 Score=46.85 Aligned_cols=142 Identities=10% Similarity=0.090 Sum_probs=74.4
Q ss_pred hHHHHHHHhhccC-ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCC-----
Q 038882 165 IFDDVWRCIIEEQ-VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFS----- 238 (347)
Q Consensus 165 ~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~----- 238 (347)
.-+.|.+.+..+. .....++|+.|+||+++|..++.......... ..+.+.... .++
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~----------------~c~~~~~~~-HPD~~~i~ 67 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPE----------------AAYKISQKI-HPDIHEFS 67 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCcc----------------HHHHHhcCC-CCCEEEEe
Confidence 3456777777654 45677999999999999999987762111000 011111111 000
Q ss_pred ccc--cccChHHHHHHHHHHh-----cCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCChh-HHhhcC-CC
Q 038882 239 ESW--KNKSLVEKSCAIFKIL-----SNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRYKE-VCGKME-AH 307 (347)
Q Consensus 239 ~~~--~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~~-v~~~~~-~~ 307 (347)
+.. .....++. ..+.+.+ .++.-++|+|+++.. ..+..++..+-....++.+|++|.+.+ +...+. ..
T Consensus 68 p~~~~~~I~idqi-R~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRc 146 (290)
T PRK05917 68 PQGKGRLHSIETP-RAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRS 146 (290)
T ss_pred cCCCCCcCcHHHH-HHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcc
Confidence 000 00122222 2333333 245568899999765 456666666655556777777776643 322221 12
Q ss_pred ceeecCC-----CCHHHHHHHH
Q 038882 308 KKLRVEC-----LTADEAWMLF 324 (347)
Q Consensus 308 ~~~~l~~-----L~~~ea~~Lf 324 (347)
..+.+.+ .+++++..+.
T Consensus 147 q~~~~~~~~~~~i~~~~~~~l~ 168 (290)
T PRK05917 147 LSIHIPMEEKTLVSKEDIAYLI 168 (290)
T ss_pred eEEEccchhccCCCHHHHHHHH
Confidence 3455554 4455555544
No 368
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.29 E-value=0.0036 Score=52.13 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.+++|+|++|+|||||++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998765
No 369
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.28 E-value=0.0019 Score=54.33 Aligned_cols=117 Identities=19% Similarity=0.160 Sum_probs=56.9
Q ss_pred EEEEEeCCCCchHHHHHHHHHhhh-ccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCcc-ccccChHHHHHHHHHHh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKLC-HERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSES-WKNKSLVEKSCAIFKIL 257 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~-~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~~~l 257 (347)
++.|+|+.|.||||+.+.+.-... .....| +| ... ..-....+++..++..+.. ........-...+...+
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~---v~--a~~--~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l 73 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSF---VP--AES--AELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANIL 73 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCC---ee--ehh--eEecccceEEEEeCCCCchhccccHHHHHHHHHHHHH
Confidence 467999999999999999883320 111111 11 100 0000011111112211100 00111222233455555
Q ss_pred cC--CcEEEEEeCCCCccccc-------ccccCCCCCCCCcEEEEecCChhHHhhc
Q 038882 258 SN--KKFVLLLDDVWEPVDLT-------KVGVPIPNSTNASKVLFTTRYKEVCGKM 304 (347)
Q Consensus 258 ~~--kr~LlVlDdv~~~~~~~-------~l~~~l~~~~~gs~iiiTtR~~~v~~~~ 304 (347)
.. ++-|+++|+.....+.. .+...+.. ..++.+|++|...++....
T Consensus 74 ~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 74 KNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLA 128 (185)
T ss_pred HhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHh
Confidence 44 88999999986542221 11122211 2367899999988776543
No 370
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.27 E-value=0.019 Score=58.25 Aligned_cols=87 Identities=16% Similarity=0.190 Sum_probs=57.6
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCcc---ccccChHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSES---WKNKSLVEKSCAI 253 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 253 (347)
..+++-|+|++|+|||||+..++... ...-..++|+.....++. ..+++++...+. ....+.++....+
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a---~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANA---QAAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 46889999999999999998876654 223356789988777664 256666653211 1123344555556
Q ss_pred HHHhcC-CcEEEEEeCCCC
Q 038882 254 FKILSN-KKFVLLLDDVWE 271 (347)
Q Consensus 254 ~~~l~~-kr~LlVlDdv~~ 271 (347)
...++. +.-|||+|.+..
T Consensus 131 ~~lv~~~~~~LVVIDSI~a 149 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVAA 149 (790)
T ss_pred HHHhhcCCCeEEEEcchhh
Confidence 665544 677899999853
No 371
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.27 E-value=0.0037 Score=53.36 Aligned_cols=119 Identities=14% Similarity=0.142 Sum_probs=61.2
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhhhcc-CCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccc-cChHHHHHHHHH
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKLCHE-RHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKN-KSLVEKSCAIFK 255 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~l~~ 255 (347)
..++.|.|+.|.||||+.+.+....... ... ++.... .--.+.+.|...++..+..... .....-...+..
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la~~G~-----~vpa~~--~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~ 101 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMAQIGC-----FVPAEY--ATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAY 101 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHHcCC-----Ccchhh--cCccChhheeEecCCccccchhhhHHHHHHHHHHH
Confidence 4789999999999999999886443111 111 111111 1112333444444332111000 011111112222
Q ss_pred Hh--cCCcEEEEEeCCCCcccc-------cccccCCCCCCCCcEEEEecCChhHHhhcC
Q 038882 256 IL--SNKKFVLLLDDVWEPVDL-------TKVGVPIPNSTNASKVLFTTRYKEVCGKME 305 (347)
Q Consensus 256 ~l--~~kr~LlVlDdv~~~~~~-------~~l~~~l~~~~~gs~iiiTtR~~~v~~~~~ 305 (347)
.+ ..++-|+++|+.....+. ..+...+. ..|+.+|++|...+++..+.
T Consensus 102 il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 102 ILDYADGDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhh
Confidence 22 357889999998543211 12222222 23788999999998876654
No 372
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.26 E-value=0.0078 Score=51.84 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=20.7
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.|.|.|++|+||||+|+.++..+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 373
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.25 E-value=0.0042 Score=51.65 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.++|.+.|++|+||||+|+.+....
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998765
No 374
>PF13245 AAA_19: Part of AAA domain
Probab=96.25 E-value=0.012 Score=41.49 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=18.7
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+.+++.|.|++|.|||+++.......
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34678889999999995555544443
No 375
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.24 E-value=0.019 Score=56.22 Aligned_cols=61 Identities=15% Similarity=0.183 Sum_probs=44.8
Q ss_pred CcccchhhhHHHHHHHhhc--cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCC
Q 038882 157 PRIIGQESIFDDVWRCIIE--EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKD 220 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 220 (347)
..++|+...++++.+.+.. .....|.|+|..|+|||++|+.+++.. ...-...+.|+++.-
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s---~r~~~p~v~v~c~~~ 249 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAAS---PRADKPLVYLNCAAL 249 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC---CcCCCCeEEEEcccC
Confidence 5689999999888887765 345688899999999999999998865 112223355555543
No 376
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.24 E-value=0.015 Score=51.03 Aligned_cols=171 Identities=13% Similarity=0.170 Sum_probs=93.6
Q ss_pred cccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhcc----CCCCCEEEEEEecCC----------C--
Q 038882 158 RIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHE----RHDFDIVIWVVVSKD----------L-- 221 (347)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~~f~~~~wv~vs~~----------~-- 221 (347)
.+.++++....+.........+-..++|++|.||-|.+..+.++. -. +-.-+..-|.+-+.. +
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~el-YG~gveklki~~~t~~tpS~kklEistvsS~yHl 92 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLREL-YGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHL 92 (351)
T ss_pred hcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHH-hCCCchheeeeeEEEecCCCceEEEEEecccceE
Confidence 356777777777776666678899999999999998887777665 21 112233344432222 1
Q ss_pred ---------ChHHHHHHHHHhcCCCCccccccChHHHHHHHHHHhcCCcE-EEEEeCCCCc--ccccccccCCCCCCCCc
Q 038882 222 ---------NLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKF-VLLLDDVWEP--VDLTKVGVPIPNSTNAS 289 (347)
Q Consensus 222 ---------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~--~~~~~l~~~l~~~~~gs 289 (347)
.-.-+..+++.++....+- + .-..+.| ++|+-.++.. +....++.....-.+.+
T Consensus 93 EitPSDaG~~DRvViQellKevAQt~qi-e-------------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~ 158 (351)
T KOG2035|consen 93 EITPSDAGNYDRVVIQELLKEVAQTQQI-E-------------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNC 158 (351)
T ss_pred EeChhhcCcccHHHHHHHHHHHHhhcch-h-------------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCc
Confidence 1122233333333211000 0 0011333 4455554432 22222222222223466
Q ss_pred EEEEecCChh-HHhhcCCC-ceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCc
Q 038882 290 KVLFTTRYKE-VCGKMEAH-KKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCH 343 (347)
Q Consensus 290 ~iiiTtR~~~-v~~~~~~~-~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~ 343 (347)
|+|+...+.. +...+.+. -.++++..+++|....+.+.+ ..+.+.+|+++++|+
T Consensus 159 RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~n 221 (351)
T KOG2035|consen 159 RLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRN 221 (351)
T ss_pred eEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhccc
Confidence 7776443321 11222221 257899999999999998765 367899999999986
No 377
>PRK15453 phosphoribulokinase; Provisional
Probab=96.23 E-value=0.031 Score=49.66 Aligned_cols=80 Identities=13% Similarity=0.060 Sum_probs=44.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCC--ChHHHHHHH--HHhc--CCCCccccccChHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDL--NLEKVQEDI--GKKI--DLFSESWKNKSLVEKS 250 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~--~~~~~~~~i--~~~l--~~~~~~~~~~~~~~~~ 250 (347)
...+|+|.|.+|+||||+++.+.+.. .... .....++...-. +-...-..+ ...- +...-.++..+.+.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if-~~~~--~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~ 80 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF-RREN--INAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELE 80 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-hhcC--CCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHH
Confidence 45799999999999999999998765 2111 123344333322 222221111 1111 2212124566777777
Q ss_pred HHHHHHhcC
Q 038882 251 CAIFKILSN 259 (347)
Q Consensus 251 ~~l~~~l~~ 259 (347)
+.++.+.++
T Consensus 81 ~~l~~l~~~ 89 (290)
T PRK15453 81 QLFREYGET 89 (290)
T ss_pred HHHHHHhcC
Confidence 888877654
No 378
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=96.22 E-value=0.019 Score=54.58 Aligned_cols=92 Identities=20% Similarity=0.342 Sum_probs=58.4
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCC-ChHHHHHHHHHhcCCCCcc----ccccCh-----
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDL-NLEKVQEDIGKKIDLFSES----WKNKSL----- 246 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~----- 246 (347)
....++|.|.+|+|||+|+.++.... . +.+-+.++++-+.+.. ...++++++...-...... ..+.+.
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~-~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNM-V-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHH-H-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 45789999999999999999988775 2 2234678888887654 3566666665432111000 011111
Q ss_pred -HHHHHHHHHHhc---CCcEEEEEeCCC
Q 038882 247 -VEKSCAIFKILS---NKKFVLLLDDVW 270 (347)
Q Consensus 247 -~~~~~~l~~~l~---~kr~LlVlDdv~ 270 (347)
......+.++++ +++.||++||+-
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~DslT 242 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNIF 242 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecChH
Confidence 122345666664 589999999984
No 379
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.22 E-value=0.0036 Score=50.47 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=20.0
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
++.+.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999997653
No 380
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=96.20 E-value=0.025 Score=50.10 Aligned_cols=91 Identities=14% Similarity=0.210 Sum_probs=51.8
Q ss_pred CceEEEEEeCCCCchHHHH-HHHHHhhhccCCCCCEE-EEEEecCCC-ChHHHHHHHHHhcCCCCc----cccccChHH-
Q 038882 177 QVGIIGLYGAGGVGKTTLL-KQLNNKLCHERHDFDIV-IWVVVSKDL-NLEKVQEDIGKKIDLFSE----SWKNKSLVE- 248 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~~f~~~-~wv~vs~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~~- 248 (347)
....++|.|.+|+|||+|| ..+.+.. +-+.+ +++-+.+.. ...++.+++...-..... ...+.+...
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 4578999999999999996 5555432 23444 566666653 456666666543211100 001111111
Q ss_pred -----HHHHHHHHh--cCCcEEEEEeCCCCc
Q 038882 249 -----KSCAIFKIL--SNKKFVLLLDDVWEP 272 (347)
Q Consensus 249 -----~~~~l~~~l--~~kr~LlVlDdv~~~ 272 (347)
....+.+++ +++..||++||+-..
T Consensus 143 ~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 143 YLAPYTGCAMGEYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcChHHH
Confidence 123344444 478999999999543
No 381
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.20 E-value=0.0061 Score=55.95 Aligned_cols=46 Identities=28% Similarity=0.475 Sum_probs=37.5
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+.++|.++.++.+.-.+...+..-+.+.|.+|+||||+|+.+..-.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 4679999998888766654445668999999999999999997765
No 382
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.20 E-value=0.043 Score=48.92 Aligned_cols=51 Identities=22% Similarity=0.182 Sum_probs=34.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIG 231 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 231 (347)
...++.|.|.+|+|||+++.+++... . ..+-..++|++... +..++...+.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~-~-~~~g~~vl~iS~E~--~~~~~~~r~~ 79 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDL-I-TQHGVRVGTISLEE--PVVRTARRLL 79 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-H-HhcCceEEEEEccc--CHHHHHHHHH
Confidence 34688899999999999999988765 1 12234678887655 3344444443
No 383
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.20 E-value=0.0076 Score=50.47 Aligned_cols=36 Identities=33% Similarity=0.401 Sum_probs=28.9
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEE
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVV 216 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 216 (347)
.+++.|+|+.|+|||||++.+.... ...|...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeec
Confidence 4789999999999999999999876 56675444443
No 384
>PTZ00185 ATPase alpha subunit; Provisional
Probab=96.20 E-value=0.037 Score=53.13 Aligned_cols=94 Identities=11% Similarity=0.091 Sum_probs=54.7
Q ss_pred CceEEEEEeCCCCchHHHH-HHHHHhhhcc-----CCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCcc-----ccccC
Q 038882 177 QVGIIGLYGAGGVGKTTLL-KQLNNKLCHE-----RHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSES-----WKNKS 245 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~-----~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~ 245 (347)
....++|.|..|+|||+|| -.+.++. .. ..+-..++++.+++..+.-.-+.+.+.+-+..... ..+.+
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~-~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep 266 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQV-RINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEP 266 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhh-hhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCC
Confidence 4578899999999999997 6666653 21 12345678888888754333344444443311100 01111
Q ss_pred hH------HHHHHHHHHh--cCCcEEEEEeCCCC
Q 038882 246 LV------EKSCAIFKIL--SNKKFVLLLDDVWE 271 (347)
Q Consensus 246 ~~------~~~~~l~~~l--~~kr~LlVlDdv~~ 271 (347)
.. -....+.+++ +++..|||+||+-.
T Consensus 267 ~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 267 AGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 11 1223344555 47899999999843
No 385
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.19 E-value=0.023 Score=56.60 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=23.9
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
++...++|+|+.|.|||||++.+...+
T Consensus 364 ~~G~~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 364 KAGEKVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356799999999999999999998765
No 386
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.19 E-value=0.021 Score=50.37 Aligned_cols=79 Identities=10% Similarity=0.003 Sum_probs=44.2
Q ss_pred EEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCCh--HHHHHHHHH----hcCCCCccccccChHHHHHHH
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNL--EKVQEDIGK----KIDLFSESWKNKSLVEKSCAI 253 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~--~~~~~~i~~----~l~~~~~~~~~~~~~~~~~~l 253 (347)
+|+|.|.+|+||||+++.+.... .... ..+..++...-+.. ...-..+.. ..+...-.+...+.+.+.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l-~~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l 77 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF-AREG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELF 77 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-HhcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHH
Confidence 58999999999999999998776 2211 12344443332221 111111111 122211124566777778888
Q ss_pred HHHhcCCc
Q 038882 254 FKILSNKK 261 (347)
Q Consensus 254 ~~~l~~kr 261 (347)
+.+.+++.
T Consensus 78 ~~L~~g~~ 85 (277)
T cd02029 78 RTYGETGR 85 (277)
T ss_pred HHHHcCCC
Confidence 88877653
No 387
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.19 E-value=0.0054 Score=52.14 Aligned_cols=92 Identities=13% Similarity=0.143 Sum_probs=44.5
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHH
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFK 255 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 255 (347)
....++.+.|.+|+||||++..+.... . ....+.++...--..---..++...-..............+...+.+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~-~----~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 87 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEF-G----GGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIE 87 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT------TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhc-c----CCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999998765 1 34445554332111111112222211110111112223345556666
Q ss_pred HhcCCcEEEEEeCCCCc
Q 038882 256 ILSNKKFVLLLDDVWEP 272 (347)
Q Consensus 256 ~l~~kr~LlVlDdv~~~ 272 (347)
..-.+++=+|+|..-..
T Consensus 88 ~a~~~~~nii~E~tl~~ 104 (199)
T PF06414_consen 88 YAIENRYNIIFEGTLSN 104 (199)
T ss_dssp HHHHCT--EEEE--TTS
T ss_pred HHHHcCCCEEEecCCCC
Confidence 66677888888987654
No 388
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=96.18 E-value=0.022 Score=56.15 Aligned_cols=26 Identities=42% Similarity=0.617 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||++.++...
T Consensus 26 ~Ge~~~liG~NGsGKSTLl~~l~Gl~ 51 (530)
T PRK15064 26 GGNRYGLIGANGCGKSTFMKILGGDL 51 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998764
No 389
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.17 E-value=0.0041 Score=49.72 Aligned_cols=23 Identities=48% Similarity=0.713 Sum_probs=20.9
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+|.|.|++|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998765
No 390
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.17 E-value=0.038 Score=48.34 Aligned_cols=51 Identities=12% Similarity=0.179 Sum_probs=34.1
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIG 231 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 231 (347)
...++.|.|.+|+|||+++.+++.+. .. .+=..++|++... +..++...++
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~-~~-~~g~~vly~s~E~--~~~~~~~r~~ 62 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENI-AK-KQGKPVLFFSLEM--SKEQLLQRLL 62 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HH-hCCCceEEEeCCC--CHHHHHHHHH
Confidence 34689999999999999999987766 21 2133567766544 3444444443
No 391
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.17 E-value=0.0045 Score=51.05 Aligned_cols=22 Identities=55% Similarity=0.721 Sum_probs=19.6
Q ss_pred EEEEeCCCCchHHHHHHHHHhh
Q 038882 181 IGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 181 i~I~G~~GiGKTtLa~~v~~~~ 202 (347)
|.|.|.+|+|||||++.+++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6899999999999999999887
No 392
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.17 E-value=0.006 Score=56.19 Aligned_cols=46 Identities=28% Similarity=0.468 Sum_probs=40.9
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+.++|-++.+..|...+.++...-+.|.|..|+||||+|+.+++-.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 5679999999999988888877888899999999999999997765
No 393
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.018 Score=50.07 Aligned_cols=53 Identities=23% Similarity=0.381 Sum_probs=40.7
Q ss_pred ccccCCC--CcccchhhhHHHHHHHhhc-------------cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 150 IEEMPIE--PRIIGQESIFDDVWRCIIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 150 ~~~~~~~--~~~vGR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+++.|++ +++=|-++.+++|++.+.- ...+-+..+|++|.|||-+|+..+.+.
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT 229 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT 229 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc
Confidence 4555654 3567889999999988643 145678899999999999999987764
No 394
>PRK13947 shikimate kinase; Provisional
Probab=96.15 E-value=0.0048 Score=50.90 Aligned_cols=23 Identities=43% Similarity=0.459 Sum_probs=21.1
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.|.|+|++|+||||+|+.+.+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998876
No 395
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.15 E-value=0.015 Score=49.17 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|.|+.|.|||||.+.+....
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999999998753
No 396
>PRK09099 type III secretion system ATPase; Provisional
Probab=96.14 E-value=0.025 Score=53.80 Aligned_cols=90 Identities=18% Similarity=0.199 Sum_probs=52.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCcc----ccccCh------
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSES----WKNKSL------ 246 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----~~~~~~------ 246 (347)
....++|.|..|+|||||++.+.... . .-..+++..-.......++.+.+...-...... ..+.+.
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~-~---~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGT-Q---CDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-C---CCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 56799999999999999999997654 1 112344433333445556556555432211100 011111
Q ss_pred HHHHHHHHHHh--cCCcEEEEEeCCC
Q 038882 247 VEKSCAIFKIL--SNKKFVLLLDDVW 270 (347)
Q Consensus 247 ~~~~~~l~~~l--~~kr~LlVlDdv~ 270 (347)
......+.+++ ++++.||++||+-
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~DslT 263 (441)
T PRK09099 238 AYVATAIAEYFRDRGLRVLLMMDSLT 263 (441)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchh
Confidence 12233455565 4789999999984
No 397
>PRK13949 shikimate kinase; Provisional
Probab=96.14 E-value=0.0045 Score=51.15 Aligned_cols=23 Identities=52% Similarity=0.486 Sum_probs=21.2
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.|.|+|++|+||||+++.++...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999876
No 398
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.14 E-value=0.0032 Score=53.64 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCchHHHHHHHHHh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (347)
.+++|+|+.|.|||||.+.+...
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 79999999999999999999843
No 399
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.2 Score=45.89 Aligned_cols=49 Identities=33% Similarity=0.401 Sum_probs=35.7
Q ss_pred cccchhhhHHHHHHHhhc--------------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCC
Q 038882 158 RIIGQESIFDDVWRCIIE--------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDF 209 (347)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f 209 (347)
++-|-+...+.+.+...- ...+-|.++|++|.|||-||+.++... ...|
T Consensus 93 DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea---ga~f 155 (386)
T KOG0737|consen 93 DIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA---GANF 155 (386)
T ss_pred hccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc---CCCc
Confidence 445666666666655321 146778899999999999999999876 5555
No 400
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.11 E-value=0.0063 Score=50.52 Aligned_cols=26 Identities=35% Similarity=0.471 Sum_probs=23.4
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+|.|+|++|+||||+|+.+....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999876
No 401
>PRK14530 adenylate kinase; Provisional
Probab=96.10 E-value=0.0051 Score=52.99 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+.|.|+|++|+||||+|+.++..+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998776
No 402
>PRK06936 type III secretion system ATPase; Provisional
Probab=96.10 E-value=0.026 Score=53.46 Aligned_cols=89 Identities=20% Similarity=0.291 Sum_probs=54.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCC-ChHHHHHHHHHhcCCCCcc----ccccChH----
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDL-NLEKVQEDIGKKIDLFSES----WKNKSLV---- 247 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~---- 247 (347)
....++|.|..|+|||||.+.+++.. .-+.++++-+.+.. ...++....+..-+..... ..+.+..
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~-----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSA-----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCC-----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 56789999999999999999998764 23567777776654 3455554443321111000 0111111
Q ss_pred --HHHHHHHHHh--cCCcEEEEEeCCC
Q 038882 248 --EKSCAIFKIL--SNKKFVLLLDDVW 270 (347)
Q Consensus 248 --~~~~~l~~~l--~~kr~LlVlDdv~ 270 (347)
.....+.+++ ++++.||++||+-
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~DslT 262 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSVT 262 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 1123455555 5799999999984
No 403
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=96.08 E-value=0.038 Score=52.58 Aligned_cols=92 Identities=18% Similarity=0.343 Sum_probs=57.6
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCC-ChHHHHHHHHHhcCCCCc----cccccCh-----
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDL-NLEKVQEDIGKKIDLFSE----SWKNKSL----- 246 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~----- 246 (347)
....++|.|.+|+|||+|+.++.... . ..+-..++++-+.+.. ...++++++...-..... ...+.+.
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~-~-~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNI-A-KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHH-H-hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 56789999999999999999988765 2 1223467777776654 456666666543211100 0011111
Q ss_pred -HHHHHHHHHHh---cCCcEEEEEeCCC
Q 038882 247 -VEKSCAIFKIL---SNKKFVLLLDDVW 270 (347)
Q Consensus 247 -~~~~~~l~~~l---~~kr~LlVlDdv~ 270 (347)
......+.+++ ++++.||++||+-
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslT 247 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchh
Confidence 12234566776 4689999999984
No 404
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.07 E-value=0.014 Score=45.25 Aligned_cols=46 Identities=20% Similarity=0.290 Sum_probs=34.4
Q ss_pred CcccchhhhHHHHHHHhhc-------cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 157 PRIIGQESIFDDVWRCIIE-------EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~-------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..++|..-..+.+++.+.. ++.-|++.+|.+|+|||.+++.+++..
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3567766555566555543 245688999999999999999998874
No 405
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.07 E-value=0.018 Score=56.73 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=23.9
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
++...++|+|+.|.|||||++.+...+
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 366899999999999999999998765
No 406
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.07 E-value=0.0047 Score=51.81 Aligned_cols=23 Identities=48% Similarity=0.663 Sum_probs=20.9
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998865
No 407
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.06 E-value=0.0094 Score=51.11 Aligned_cols=22 Identities=36% Similarity=0.518 Sum_probs=19.9
Q ss_pred EEEEeCCCCchHHHHHHHHHhh
Q 038882 181 IGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 181 i~I~G~~GiGKTtLa~~v~~~~ 202 (347)
|.|.|++|+||||+|+.+...+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999998765
No 408
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.06 E-value=0.0048 Score=51.38 Aligned_cols=24 Identities=42% Similarity=0.542 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
++++|+|++|+|||||++.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 578999999999999999998754
No 409
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.05 E-value=0.01 Score=54.12 Aligned_cols=46 Identities=26% Similarity=0.358 Sum_probs=41.0
Q ss_pred CcccchhhhHHHHHHHhhc------cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 157 PRIIGQESIFDDVWRCIIE------EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..|+|.++.+++|++.+.. ..-+++.++|+.|.|||||++.+.+-.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999998865 256899999999999999999998876
No 410
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=96.05 E-value=0.012 Score=53.50 Aligned_cols=48 Identities=33% Similarity=0.392 Sum_probs=32.8
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHH
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQE 228 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 228 (347)
.+++.+.|.||+||||+|....-.. ...+ ..+.-|+.....++.+++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~l-A~~g--~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKL-AESG--KKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHH-HHcC--CcEEEEEeCCCCchHhhhc
Confidence 4789999999999999999876665 2222 3366666655555444443
No 411
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.04 E-value=0.0091 Score=48.59 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=29.5
Q ss_pred hhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 164 SIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 164 ~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+.++.|.+.|.. +++.++|..|+|||||...+....
T Consensus 24 ~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 356677777765 789999999999999999998753
No 412
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.03 E-value=0.035 Score=45.87 Aligned_cols=82 Identities=12% Similarity=0.208 Sum_probs=43.1
Q ss_pred EEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCcccc-ccChHHHHHHHHHHhc
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWK-NKSLVEKSCAIFKILS 258 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~l~~~l~ 258 (347)
++.|.|.+|+|||++|..+.... .. ..+++.-...+ -.+..+.|..........+. -.....+...+..+..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~---~~---~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~ 75 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS---GL---QVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA 75 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc---CC---CcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC
Confidence 68999999999999999997664 11 13344333333 23344444332221111121 1112234444444333
Q ss_pred CCcEEEEEeCC
Q 038882 259 NKKFVLLLDDV 269 (347)
Q Consensus 259 ~kr~LlVlDdv 269 (347)
+ .-++++|.+
T Consensus 76 ~-~~~VlID~L 85 (170)
T PRK05800 76 P-GRCVLVDCL 85 (170)
T ss_pred C-CCEEEehhH
Confidence 3 337889987
No 413
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.03 E-value=0.04 Score=53.00 Aligned_cols=25 Identities=40% Similarity=0.606 Sum_probs=22.7
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+++++|+.|+||||++.+++..+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH
Confidence 4799999999999999999998766
No 414
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.03 E-value=0.058 Score=51.05 Aligned_cols=25 Identities=40% Similarity=0.581 Sum_probs=22.0
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+++++|+.|+||||++..+....
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999887754
No 415
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.02 E-value=0.0061 Score=46.79 Aligned_cols=22 Identities=41% Similarity=0.647 Sum_probs=20.2
Q ss_pred EEEEeCCCCchHHHHHHHHHhh
Q 038882 181 IGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 181 i~I~G~~GiGKTtLa~~v~~~~ 202 (347)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998765
No 416
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.02 E-value=0.039 Score=50.47 Aligned_cols=26 Identities=38% Similarity=0.511 Sum_probs=23.6
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+..++.++|++|+||||++..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999998877
No 417
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=96.01 E-value=0.032 Score=53.21 Aligned_cols=91 Identities=19% Similarity=0.201 Sum_probs=50.3
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHh------cCCC--Ccc--ccccC
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKK------IDLF--SES--WKNKS 245 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~------l~~~--~~~--~~~~~ 245 (347)
.....++|+|..|+|||||++.+.... ..-..++++.-....+..++..+.+.. +..- .+. .....
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~----~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~ 231 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNT----SADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIK 231 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccc----CCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHH
Confidence 456899999999999999999887754 122244444323333445444332211 1100 000 00011
Q ss_pred hHHHHHHHHHHh--cCCcEEEEEeCCC
Q 038882 246 LVEKSCAIFKIL--SNKKFVLLLDDVW 270 (347)
Q Consensus 246 ~~~~~~~l~~~l--~~kr~LlVlDdv~ 270 (347)
.......+.+++ ++++.||++||+-
T Consensus 232 ~~~~a~~iAEyfr~~g~~Vll~~Dslt 258 (438)
T PRK07721 232 GAYTATAIAEYFRDQGLNVMLMMDSVT 258 (438)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeChH
Confidence 122233455665 5799999999983
No 418
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.01 E-value=0.0059 Score=52.05 Aligned_cols=26 Identities=38% Similarity=0.470 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+|+|+|++|+|||||++.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35789999999999999999998865
No 419
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=96.01 E-value=0.025 Score=50.20 Aligned_cols=101 Identities=12% Similarity=0.098 Sum_probs=57.2
Q ss_pred CcccchhhhHHHHHHHhhc----c---CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHH
Q 038882 157 PRIIGQESIFDDVWRCIIE----E---QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQED 229 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~----~---~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 229 (347)
..++|..-..+.++..+.. + +.=+++.+|.+|+||.-.++.+++..-+...+ ......
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~---------------S~~V~~ 146 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLR---------------SPFVHH 146 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhcccc---------------chhHHH
Confidence 3456665555556665543 2 45689999999999999999998876111111 111222
Q ss_pred HHHhcCCCCccccccChHHHHHHHHHHhc-CCcEEEEEeCCCCc
Q 038882 230 IGKKIDLFSESWKNKSLVEKSCAIFKILS-NKKFVLLLDDVWEP 272 (347)
Q Consensus 230 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~ 272 (347)
....+..+....-..-..++...++..++ -+|-|+|+|+++..
T Consensus 147 fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 147 FVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred hhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 23333332211111112333444444443 38999999999775
No 420
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=96.01 E-value=0.028 Score=53.47 Aligned_cols=89 Identities=20% Similarity=0.287 Sum_probs=51.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCC-CChHHHHHHHHHhcCCCCc-----cccccC-----
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKD-LNLEKVQEDIGKKIDLFSE-----SWKNKS----- 245 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~-----~~~~~~----- 245 (347)
....++|+|..|+|||||++.+.... ..+.++...+... ....++...+...-..... ..+...
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~-----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~ 241 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFT-----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLR 241 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHH
Confidence 45689999999999999999887643 2234444444433 3455555555544322110 001111
Q ss_pred hHHHHHHHHHHh--cCCcEEEEEeCCC
Q 038882 246 LVEKSCAIFKIL--SNKKFVLLLDDVW 270 (347)
Q Consensus 246 ~~~~~~~l~~~l--~~kr~LlVlDdv~ 270 (347)
.......+.+++ ++++.||++||+-
T Consensus 242 a~~~a~aiAEyfrd~G~~VLl~~DslT 268 (451)
T PRK05688 242 AAMYCTRIAEYFRDKGKNVLLLMDSLT 268 (451)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecchh
Confidence 112223455665 5799999999984
No 421
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=96.01 E-value=0.029 Score=53.19 Aligned_cols=91 Identities=19% Similarity=0.253 Sum_probs=49.8
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecC-CCChHHHHHHHHHhcCCCC--------cc--cccc
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSK-DLNLEKVQEDIGKKIDLFS--------ES--WKNK 244 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~--------~~--~~~~ 244 (347)
.....++|.|..|+|||||++.+.... ..+..+...+.. .....++..+.+..-+... +. ....
T Consensus 153 ~~GQ~igI~G~sGaGKSTLl~~I~g~~-----~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl 227 (434)
T PRK07196 153 GKGQRVGLMAGSGVGKSVLLGMITRYT-----QADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRI 227 (434)
T ss_pred ecceEEEEECCCCCCccHHHHHHhccc-----CCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhH
Confidence 356789999999999999999887654 122322222322 2233444434333322110 00 0111
Q ss_pred ChHHHHHHHHHHh--cCCcEEEEEeCCCC
Q 038882 245 SLVEKSCAIFKIL--SNKKFVLLLDDVWE 271 (347)
Q Consensus 245 ~~~~~~~~l~~~l--~~kr~LlVlDdv~~ 271 (347)
...+....+.+++ +++..||++||+-.
T Consensus 228 ~a~e~a~~iAEyfr~~g~~Vll~~Dsltr 256 (434)
T PRK07196 228 KATELCHAIATYYRDKGHDVLLLVDSLTR 256 (434)
T ss_pred HHHHHHHHHHHHhhhccCCEEEeecchhH
Confidence 1223334455554 47899999999843
No 422
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=95.99 E-value=0.042 Score=55.39 Aligned_cols=26 Identities=38% Similarity=0.586 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||.+.+....
T Consensus 28 ~Ge~v~LvG~NGsGKSTLLriiaG~~ 53 (635)
T PRK11147 28 DNERVCLVGRNGAGKSTLMKILNGEV 53 (635)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 45689999999999999999998764
No 423
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=95.98 E-value=0.032 Score=52.91 Aligned_cols=92 Identities=18% Similarity=0.199 Sum_probs=53.6
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCcc----ccccC------h
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSES----WKNKS------L 246 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----~~~~~------~ 246 (347)
....++|.|..|+|||||++.++... .....++...-.......++++..+..-+..... ..+.+ .
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~----~~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra 230 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNA----KADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRA 230 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC----CCCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHH
Confidence 55788999999999999999998764 1222333332233356666766665543221100 01111 1
Q ss_pred HHHHHHHHHHh--cCCcEEEEEeCCCCc
Q 038882 247 VEKSCAIFKIL--SNKKFVLLLDDVWEP 272 (347)
Q Consensus 247 ~~~~~~l~~~l--~~kr~LlVlDdv~~~ 272 (347)
......+.+++ ++++.||++||+-..
T Consensus 231 ~~~a~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 231 AKLATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecchHHH
Confidence 12233445555 478999999998543
No 424
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.98 E-value=0.0062 Score=49.16 Aligned_cols=22 Identities=45% Similarity=0.523 Sum_probs=20.1
Q ss_pred EEEEeCCCCchHHHHHHHHHhh
Q 038882 181 IGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 181 i~I~G~~GiGKTtLa~~v~~~~ 202 (347)
|.++|++|+||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999998765
No 425
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.98 E-value=0.016 Score=49.57 Aligned_cols=41 Identities=37% Similarity=0.501 Sum_probs=27.3
Q ss_pred EEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCC
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLN 222 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 222 (347)
.|+|+|-||+||||+|..+.... ..+..| .+.-|....+++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l-~~~~~~-~VLvVDaDpd~n 42 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRL-LSKGGY-NVLVVDADPDSN 42 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHH-HhcCCc-eEEEEeCCCCCC
Confidence 58999999999999999966665 222323 344455444443
No 426
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=95.97 E-value=0.24 Score=44.55 Aligned_cols=168 Identities=10% Similarity=-0.000 Sum_probs=82.5
Q ss_pred hHHHHHHHhhccCc-eEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCC----Cc
Q 038882 165 IFDDVWRCIIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLF----SE 239 (347)
Q Consensus 165 ~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~----~~ 239 (347)
.++.+...+..+.. ....++| |.||+++|..++.... -....+. ..+..-...+.+...-... .+
T Consensus 10 ~~~~L~~~~~~~rl~hAyLf~G--~~G~~~~A~~~A~~ll-C~~~~~~-------~~Cg~C~~C~~i~~~~HPD~~~i~p 79 (290)
T PRK07276 10 VFQRFQTILEQDRLNHAYLFSG--DFASFEMALFLAQSLF-CEQKEGV-------LPCGHCRSCRLIEQGEFSDVTVIEP 79 (290)
T ss_pred HHHHHHHHHHcCCcceeeeeeC--CccHHHHHHHHHHHHc-CCCCCCC-------CCCCCCHHHHHHhcCCCCCeeeecC
Confidence 45556666666543 4556777 5899999999887661 1111000 0011112222222111100 00
Q ss_pred cccccChHHHHHHHHHHh-----cCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCChh-HHhhcCC-Ccee
Q 038882 240 SWKNKSLVEKSCAIFKIL-----SNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRYKE-VCGKMEA-HKKL 310 (347)
Q Consensus 240 ~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~~-v~~~~~~-~~~~ 310 (347)
.......++... +.+.+ .+++-++|+|+++.. .....++..+-..+.++.+|++|.+.+ +...+.+ ...+
T Consensus 80 ~~~~I~idqIR~-l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i 158 (290)
T PRK07276 80 QGQVIKTDTIRE-LVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIF 158 (290)
T ss_pred CCCcCCHHHHHH-HHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceee
Confidence 001122333332 22222 346679999999776 345666666655556677777776653 3332222 2366
Q ss_pred ecCCCCHHHHHHHHhhhhChhhHHHHHHHhCCcc
Q 038882 311 RVECLTADEAWMLFNVKVGEDTIDKIFVKCCCHT 344 (347)
Q Consensus 311 ~l~~L~~~ea~~Lf~~~~~~~~~~~I~~~~~G~P 344 (347)
.+.+ +.++..+.+...--.....+++....|.|
T Consensus 159 ~f~~-~~~~~~~~L~~~g~~~~~a~~la~~~~s~ 191 (290)
T PRK07276 159 HFPK-NEAYLIQLLEQKGLLKTQAELLAKLAQST 191 (290)
T ss_pred eCCC-cHHHHHHHHHHcCCChHHHHHHHHHCCCH
Confidence 7766 66666666654322222234444444544
No 427
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.97 E-value=0.038 Score=52.32 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+|.++|.+|+||||++..++..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999988766
No 428
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.96 E-value=0.035 Score=52.91 Aligned_cols=41 Identities=29% Similarity=0.391 Sum_probs=28.6
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecC
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSK 219 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 219 (347)
.+++.++|++|+||||++..++... .....-..+..++...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~-~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY-ALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEECCc
Confidence 3689999999999999999888766 2112223555665543
No 429
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.95 E-value=0.079 Score=42.51 Aligned_cols=109 Identities=10% Similarity=0.110 Sum_probs=78.1
Q ss_pred eeccchhHHHhhHHHHhhhhhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 038882 8 SISFSCDAIFSHCLNCTERQVAFISELEDNLDSLQAEMQKLIEVRDDVMTRVIIAEQQQMKRLNQVQGWLKRVEAVEAEV 87 (347)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~Wl~~l~~~~~d~ 87 (347)
+..|+++.+++.|...+.+...-...++.-++.|...++.|..++.+++..-. ..+..-+.-++++.+...++
T Consensus 6 ~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~-------eld~~~~ee~e~L~~~L~~g 78 (147)
T PF05659_consen 6 VGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNV-------ELDRPRQEEIERLKELLEKG 78 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhh-------hcCCchhHHHHHHHHHHHHH
Confidence 34577788888888888888777888999999999999999999999765421 11222256677888888888
Q ss_pred HHHHHHHHHHhhhhhccCcCCCCchhhhhhhHHHHHHHHHHHHHH
Q 038882 88 RELQRIQTQAINNLCLGGYCSKKCISSYKFGKEVSTKLKVLADLK 132 (347)
Q Consensus 88 ed~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~ 132 (347)
++++..|..- . ..++...++.+++|+++.+.+....
T Consensus 79 ~~LV~k~sk~-------~--r~n~~kk~~y~~Ki~~le~~l~~f~ 114 (147)
T PF05659_consen 79 KELVEKCSKV-------R--RWNLYKKPRYARKIEELEESLRRFI 114 (147)
T ss_pred HHHHHHhccc-------c--HHHHHhhHhHHHHHHHHHHHHHHHh
Confidence 8888775321 0 1234556777888888877776554
No 430
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.93 E-value=0.0091 Score=51.08 Aligned_cols=30 Identities=27% Similarity=0.492 Sum_probs=26.3
Q ss_pred hhccCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 173 IIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 173 L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+...+.++|+++|..|+|||||...+....
T Consensus 17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred hhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 445679999999999999999999998875
No 431
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.93 E-value=0.0081 Score=49.60 Aligned_cols=26 Identities=38% Similarity=0.546 Sum_probs=23.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|..|+|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 35799999999999999999999876
No 432
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=95.93 E-value=0.029 Score=53.16 Aligned_cols=90 Identities=22% Similarity=0.266 Sum_probs=52.6
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCC-CChHHHHHHHHHhcCCCCc----cccccCh----
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKD-LNLEKVQEDIGKKIDLFSE----SWKNKSL---- 246 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~----~~~~~~~---- 246 (347)
.....++|.|..|+|||||++.+.+.. +.+..++..+.+. ..+.+++.+....-..... ...+.+.
T Consensus 153 ~~GqrigI~G~sG~GKSTLL~~I~~~~-----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~ 227 (433)
T PRK07594 153 GEGQRVGIFSAPGVGKSTLLAMLCNAP-----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV 227 (433)
T ss_pred CCCCEEEEECCCCCCccHHHHHhcCCC-----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHH
Confidence 356789999999999999999887653 3344555555553 3444555554321100000 0001111
Q ss_pred --HHHHHHHHHHh--cCCcEEEEEeCCC
Q 038882 247 --VEKSCAIFKIL--SNKKFVLLLDDVW 270 (347)
Q Consensus 247 --~~~~~~l~~~l--~~kr~LlVlDdv~ 270 (347)
......+.+++ ++++.||++||+-
T Consensus 228 ~a~~~a~tiAEyfrd~G~~VLl~~Dslt 255 (433)
T PRK07594 228 RALFVATTIAEFFRDNGKRVVLLADSLT 255 (433)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCHH
Confidence 12233455565 4789999999984
No 433
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.92 E-value=0.021 Score=48.14 Aligned_cols=23 Identities=43% Similarity=0.668 Sum_probs=21.6
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999887
No 434
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.04 Score=56.42 Aligned_cols=102 Identities=23% Similarity=0.296 Sum_probs=63.8
Q ss_pred CcccchhhhHHHHHHHhhcc--------CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHH
Q 038882 157 PRIIGQESIFDDVWRCIIEE--------QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQE 228 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~--------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 228 (347)
..++|.++.+..|.+.+... +...+.+.|+.|+|||.||+.++... -+..+..+-++.+. ...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~---Fgse~~~IriDmse------~~e 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV---FGSEENFIRLDMSE------FQE 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH---cCCccceEEechhh------hhh
Confidence 35677777777777776541 45678899999999999999999876 34444444444443 222
Q ss_pred HHHHhcCCCCccccccChHHHHHHHHHHhcCCcE-EEEEeCCCCc
Q 038882 229 DIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKF-VLLLDDVWEP 272 (347)
Q Consensus 229 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~ 272 (347)
+.+.++. .+. .-..+....|.+.++.++| +|+||||+..
T Consensus 633 -vskligs-p~g---yvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 633 -VSKLIGS-PPG---YVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred -hhhccCC-Ccc---cccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 2222232 111 1222333467777887775 6668999764
No 435
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.92 E-value=0.057 Score=52.90 Aligned_cols=88 Identities=16% Similarity=0.143 Sum_probs=55.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCc-------------cccc
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSE-------------SWKN 243 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-------------~~~~ 243 (347)
...++.|.|.+|+|||+|+..++... ...-..++|++.... ..++.+.. ..++..-. .+..
T Consensus 272 ~g~~~li~G~~G~GKT~l~~~~~~~~---~~~g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 345 (509)
T PRK09302 272 RGSIILVSGATGTGKTLLASKFAEAA---CRRGERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEKGLLKIICARPES 345 (509)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhCCCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhcCCceeecCCccc
Confidence 45788999999999999999998765 233467788876553 45554443 34432110 0112
Q ss_pred cChHHHHHHHHHHhcC-CcEEEEEeCCC
Q 038882 244 KSLVEKSCAIFKILSN-KKFVLLLDDVW 270 (347)
Q Consensus 244 ~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 270 (347)
.+..+....+.+.+.. +.-++|+|.+.
T Consensus 346 ~~~~~~~~~i~~~i~~~~~~~vVIDslt 373 (509)
T PRK09302 346 YGLEDHLIIIKREIEEFKPSRVAIDPLS 373 (509)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 2334555566666543 55689999984
No 436
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=95.91 E-value=0.029 Score=53.64 Aligned_cols=122 Identities=18% Similarity=0.178 Sum_probs=67.1
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEe------------------------cCCCChHHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVV------------------------SKDLNLEKVQEDIGK 232 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v------------------------s~~~~~~~~~~~i~~ 232 (347)
--..|+++|+.|+|||||.+.++.+.....+.-........ -......+..+.|+.
T Consensus 415 ~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilg 494 (614)
T KOG0927|consen 415 LDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILG 494 (614)
T ss_pred cccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHH
Confidence 44688999999999999999998877322211111100000 001235666777888
Q ss_pred hcCCCCccc----cccChHHHHHHH-HHHhcCCcEEEEEeCCCCccccccc---ccCCCCCCCCcEEEEecCChhH
Q 038882 233 KIDLFSESW----KNKSLVEKSCAI-FKILSNKKFVLLLDDVWEPVDLTKV---GVPIPNSTNASKVLFTTRYKEV 300 (347)
Q Consensus 233 ~l~~~~~~~----~~~~~~~~~~~l-~~~l~~kr~LlVlDdv~~~~~~~~l---~~~l~~~~~gs~iiiTtR~~~v 300 (347)
.++...+.. ...+..+....+ ....-..+-|||||.-.+.-+.+.+ -.++ +.-.|. +|++|.+-.+
T Consensus 495 rfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeai-Ne~~Gg-vv~vSHDfrl 568 (614)
T KOG0927|consen 495 RFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAI-NEFPGG-VVLVSHDFRL 568 (614)
T ss_pred HhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHH-hccCCc-eeeeechhhH
Confidence 877643221 122222333333 3334467899999998776444433 2222 222344 6777766543
No 437
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.91 E-value=0.06 Score=52.31 Aligned_cols=26 Identities=31% Similarity=0.509 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|.|||||++.++...
T Consensus 49 ~GEivgIiGpNGSGKSTLLkiLaGLl 74 (549)
T PRK13545 49 EGEIVGIIGLNGSGKSTLSNLIAGVT 74 (549)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45799999999999999999998765
No 438
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.91 E-value=0.0069 Score=48.19 Aligned_cols=23 Identities=52% Similarity=0.790 Sum_probs=20.4
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.+.|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998764
No 439
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.91 E-value=0.0054 Score=50.24 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=19.6
Q ss_pred EEEEeCCCCchHHHHHHHHHhh
Q 038882 181 IGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 181 i~I~G~~GiGKTtLa~~v~~~~ 202 (347)
|.|+|++|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998765
No 440
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=95.91 E-value=0.051 Score=54.74 Aligned_cols=26 Identities=42% Similarity=0.662 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||.+.+....
T Consensus 26 ~Ge~v~LvG~NGsGKSTLLkiL~G~~ 51 (638)
T PRK10636 26 PGQKVGLVGKNGCGKSTLLALLKNEI 51 (638)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998764
No 441
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.90 E-value=0.024 Score=57.23 Aligned_cols=46 Identities=17% Similarity=0.181 Sum_probs=36.1
Q ss_pred CcccchhhhHHHHHHHhhc--cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 157 PRIIGQESIFDDVWRCIIE--EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+.++|....+.++.+.... .....|.|+|..|+||+++|+.+.+..
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 4578888888877776654 233457899999999999999998754
No 442
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=95.90 E-value=0.041 Score=52.29 Aligned_cols=93 Identities=11% Similarity=0.147 Sum_probs=58.2
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhcc----------C-CCCCEEEEEEecCCCChHHHHHHHHHhcCCCCcc-----
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHE----------R-HDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSES----- 240 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----------~-~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----- 240 (347)
....++|.|-+|+|||+|+.++.++. .. + ..-..+++..+.+.....+.+.+.+..-+.....
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~-~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~a 218 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQA-GLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLN 218 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhh-ccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEE
Confidence 45789999999999999999998775 21 0 0111567777887766666666666554411110
Q ss_pred ccccCh------HHHHHHHHHHhc---CCcEEEEEeCCC
Q 038882 241 WKNKSL------VEKSCAIFKILS---NKKFVLLLDDVW 270 (347)
Q Consensus 241 ~~~~~~------~~~~~~l~~~l~---~kr~LlVlDdv~ 270 (347)
..+.+. ......+.++++ +++.||++||+-
T Consensus 219 tsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslT 257 (466)
T TIGR01040 219 LANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMS 257 (466)
T ss_pred CCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChH
Confidence 011111 122334666665 589999999983
No 443
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.90 E-value=0.0061 Score=49.66 Aligned_cols=20 Identities=50% Similarity=0.747 Sum_probs=18.6
Q ss_pred EEEEEeCCCCchHHHHHHHH
Q 038882 180 IIGLYGAGGVGKTTLLKQLN 199 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~ 199 (347)
.|.|.|.||+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999886
No 444
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.90 E-value=0.01 Score=51.13 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|.+|+|||||++.+..-.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 45799999999999999999997644
No 445
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.89 E-value=0.0065 Score=51.04 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.++.|+|++|+|||||++.+....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997654
No 446
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.026 Score=48.81 Aligned_cols=44 Identities=27% Similarity=0.337 Sum_probs=32.2
Q ss_pred ccchhhhHHHHHHHhhc-------------cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 159 IIGQESIFDDVWRCIIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 159 ~vGR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+=|.+-..+++.+...- +..+-+.++|++|+|||.||+.++++.
T Consensus 157 iggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t 213 (408)
T KOG0727|consen 157 IGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 213 (408)
T ss_pred cccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence 44555555555554321 356788899999999999999999875
No 447
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.88 E-value=0.012 Score=53.56 Aligned_cols=24 Identities=46% Similarity=0.563 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+++.+.|-||+||||+|...+-..
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~ 25 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALAL 25 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHH
Confidence 688999999999999998877665
No 448
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.88 E-value=0.013 Score=49.26 Aligned_cols=105 Identities=17% Similarity=0.129 Sum_probs=54.1
Q ss_pred HHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccC
Q 038882 166 FDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKS 245 (347)
Q Consensus 166 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~ 245 (347)
...++...... ...+.|+|+.|+|||||++.+.... . .. ...+.+ ........-.... .++...........
T Consensus 14 ~~~~l~~~v~~-g~~i~I~G~tGSGKTTll~aL~~~i-~--~~-~~~i~i--ed~~E~~~~~~~~-~~~~~~~~~~~~~~ 85 (186)
T cd01130 14 QAAYLWLAVEA-RKNILISGGTGSGKTTLLNALLAFI-P--PD-ERIITI--EDTAELQLPHPNW-VRLVTRPGNVEGSG 85 (186)
T ss_pred HHHHHHHHHhC-CCEEEEECCCCCCHHHHHHHHHhhc-C--CC-CCEEEE--CCccccCCCCCCE-EEEEEecCCCCCCC
Confidence 34444444433 4789999999999999999988765 2 11 122222 1110000000000 00000000000112
Q ss_pred hHHHHHHHHHHhcCCcEEEEEeCCCCccccccc
Q 038882 246 LVEKSCAIFKILSNKKFVLLLDDVWEPVDLTKV 278 (347)
Q Consensus 246 ~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l 278 (347)
.......+...++..+=.++++.+.+.+.+..+
T Consensus 86 ~~~~~~~l~~~lR~~pd~i~igEir~~ea~~~~ 118 (186)
T cd01130 86 EVTMADLLRSALRMRPDRIIVGEVRGGEALDLL 118 (186)
T ss_pred ccCHHHHHHHHhccCCCEEEEEccCcHHHHHHH
Confidence 233455666677778888999999887665533
No 449
>PRK13975 thymidylate kinase; Provisional
Probab=95.87 E-value=0.008 Score=50.80 Aligned_cols=24 Identities=46% Similarity=0.512 Sum_probs=22.4
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..|.|.|+.|+||||+++.+....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999887
No 450
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.87 E-value=0.035 Score=52.50 Aligned_cols=89 Identities=24% Similarity=0.322 Sum_probs=51.3
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCC-ChHHHHHHHHHhcCCCCc----cccccCh-----
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDL-NLEKVQEDIGKKIDLFSE----SWKNKSL----- 246 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~----- 246 (347)
....++|.|..|+|||||++.+.+.. ..+..+...+.... .+.++.+.....-..... ...+.+.
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~-----~~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~ 210 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYT-----EADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLR 210 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCC-----CCCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHH
Confidence 45789999999999999998887654 22344445555533 355555554433111000 0011111
Q ss_pred -HHHHHHHHHHh--cCCcEEEEEeCCC
Q 038882 247 -VEKSCAIFKIL--SNKKFVLLLDDVW 270 (347)
Q Consensus 247 -~~~~~~l~~~l--~~kr~LlVlDdv~ 270 (347)
......+.+++ ++++.||++||+-
T Consensus 211 a~~~a~tiAEyfr~~G~~Vll~~Dslt 237 (411)
T TIGR03496 211 AAFYATAIAEYFRDQGKDVLLLMDSLT 237 (411)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeChH
Confidence 12223445555 5789999999983
No 451
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.86 E-value=0.67 Score=44.24 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=35.7
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKK 233 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 233 (347)
...++.|.|.+|+|||++|..++... .... -..++|++.. .+..++...++..
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~-a~~~-g~~v~~fSlE--m~~~~l~~Rl~~~ 245 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENV-ALRE-GKPVLFFSLE--MSAEQLGERLLAS 245 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHH-HHhC-CCcEEEEECC--CCHHHHHHHHHHH
Confidence 35688999999999999999998665 2122 2345666543 3556666655543
No 452
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=95.85 E-value=0.036 Score=45.40 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCchHHHHHHHHHh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (347)
+...|+|+.|.|||++.+.+.--
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~ 44 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLA 44 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999986543
No 453
>PRK14529 adenylate kinase; Provisional
Probab=95.84 E-value=0.04 Score=47.55 Aligned_cols=82 Identities=21% Similarity=0.126 Sum_probs=43.7
Q ss_pred EEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEE--EEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHHhc
Q 038882 181 IGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIW--VVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILS 258 (347)
Q Consensus 181 i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~w--v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 258 (347)
|.|.|++|+||||+++.+...+ .. .+.+..-. -.+..........++++.+-.. .+.+-....+.+.+.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~-~~-~~is~gdllr~~i~~~t~lg~~i~~~i~~G~l-------vpdei~~~lv~~~l~ 73 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKY-DL-AHIESGAIFREHIGGGTELGKKAKEYIDRGDL-------VPDDITIPMILETLK 73 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-CC-CCcccchhhhhhccCCChHHHHHHHHHhccCc-------chHHHHHHHHHHHHh
Confidence 7889999999999999998877 21 22221111 1122222333444444433211 222333444555553
Q ss_pred C-CcEEEEEeCCCC
Q 038882 259 N-KKFVLLLDDVWE 271 (347)
Q Consensus 259 ~-kr~LlVlDdv~~ 271 (347)
+ ..--+|||..=.
T Consensus 74 ~~~~~g~iLDGfPR 87 (223)
T PRK14529 74 QDGKNGWLLDGFPR 87 (223)
T ss_pred ccCCCcEEEeCCCC
Confidence 3 144588998843
No 454
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.84 E-value=0.016 Score=56.35 Aligned_cols=54 Identities=28% Similarity=0.454 Sum_probs=41.9
Q ss_pred cccchhhhHHHHHHHhhcc-----CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEE
Q 038882 158 RIIGQESIFDDVWRCIIEE-----QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVV 216 (347)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~~-----~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 216 (347)
++.--.+.++++.+||... ..+++.+.|++|+||||.++.+++.. .|+..=|.+
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecC
Confidence 4455567888888888762 35789999999999999999998865 466666764
No 455
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.84 E-value=0.053 Score=59.41 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+=|.++|++|+|||.||++++.+.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 45678899999999999999999875
No 456
>PRK06851 hypothetical protein; Provisional
Probab=95.84 E-value=0.24 Score=46.00 Aligned_cols=55 Identities=22% Similarity=0.286 Sum_probs=37.3
Q ss_pred cchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCC
Q 038882 160 IGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKD 220 (347)
Q Consensus 160 vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 220 (347)
-|.-...+.+. .+-.+++.|.|.+|+|||||++.++... . ...++..++-|.+.+
T Consensus 200 ~G~~s~~~~l~----~~~~~~~~i~G~pG~GKstl~~~i~~~a-~-~~G~~v~~~hC~~dP 254 (367)
T PRK06851 200 KGAVDFVPSLT----EGVKNRYFLKGRPGTGKSTMLKKIAKAA-E-ERGFDVEVYHCGFDP 254 (367)
T ss_pred CcHHhhHHhHh----cccceEEEEeCCCCCcHHHHHHHHHHHH-H-hCCCeEEEEeCCCCC
Confidence 34444444443 4446889999999999999999999876 2 345555555544443
No 457
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.84 E-value=0.0069 Score=52.36 Aligned_cols=121 Identities=12% Similarity=0.077 Sum_probs=60.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccc-cccChHHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESW-KNKSLVEKSCAIFK 255 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 255 (347)
...++.|.|+.|.||||+.+.+...... .+-.+..|-.-.. -..+.+|+..++..+... .......-...+..
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~l--a~~G~~v~a~~~~----~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~ 103 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITIM--AQIGSFVPASSAT----LSIFDSVLTRMGASDSIQHGMSTFMVELSETSH 103 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH--HhCCCEEEcCceE----EeccceEEEEecCccccccccchHHHHHHHHHH
Confidence 3568899999999999999998773201 1111122211000 001112222222111100 11122222333444
Q ss_pred Hhc--CCcEEEEEeCCCCccc-------ccccccCCCCCCCCcEEEEecCChhHHhhc
Q 038882 256 ILS--NKKFVLLLDDVWEPVD-------LTKVGVPIPNSTNASKVLFTTRYKEVCGKM 304 (347)
Q Consensus 256 ~l~--~kr~LlVlDdv~~~~~-------~~~l~~~l~~~~~gs~iiiTtR~~~v~~~~ 304 (347)
.++ +++-|++||++....+ ...+...+... .++.+|++|....++...
T Consensus 104 il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 104 ILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 443 4789999999844311 11122223222 578999999998876544
No 458
>PRK13409 putative ATPase RIL; Provisional
Probab=95.84 E-value=0.037 Score=55.08 Aligned_cols=26 Identities=38% Similarity=0.685 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||++.+....
T Consensus 98 ~Gev~gLvG~NGaGKSTLlkiL~G~l 123 (590)
T PRK13409 98 EGKVTGILGPNGIGKTTAVKILSGEL 123 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45799999999999999999998764
No 459
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.83 E-value=0.0083 Score=49.73 Aligned_cols=24 Identities=42% Similarity=0.494 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..|.|+|+.|+|||||++.+....
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHc
Confidence 468999999999999999998865
No 460
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.83 E-value=0.009 Score=50.63 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+|.|.|.+|+||||+|+.+....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998764
No 461
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.82 E-value=0.011 Score=50.03 Aligned_cols=124 Identities=18% Similarity=0.158 Sum_probs=69.2
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEec-------------------CCC----------------
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVS-------------------KDL---------------- 221 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs-------------------~~~---------------- 221 (347)
...+++|+|++|+|||||.+.+..-. ..-.+.+|+.-. +.|
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE----~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap 102 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE----EPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAP 102 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc----CCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhh
Confidence 45799999999999999999986543 333345555321 111
Q ss_pred ---------ChHHHHHHHHHhcCCCCcc----ccccChHHHHHHHHHHhcCCcEEEEEeCCCCccccccc---ccCCC-C
Q 038882 222 ---------NLEKVQEDIGKKIDLFSES----WKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPVDLTKV---GVPIP-N 284 (347)
Q Consensus 222 ---------~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l---~~~l~-~ 284 (347)
..++...+++..++..+.. ..-+..++..-.+.+.|.=++-++.||+.-+.-|-+-. +.... -
T Consensus 103 ~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~L 182 (240)
T COG1126 103 VKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL 182 (240)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHH
Confidence 1233334444454442211 11122344445577777888889999999765332211 11110 1
Q ss_pred CCCCcEEEEecCChhHHhhc
Q 038882 285 STNASKVLFTTRYKEVCGKM 304 (347)
Q Consensus 285 ~~~gs~iiiTtR~~~v~~~~ 304 (347)
...|-..|+.|.....+...
T Consensus 183 A~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 183 AEEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred HHcCCeEEEEechhHHHHHh
Confidence 23466677777776665543
No 462
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.82 E-value=0.03 Score=50.94 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=32.5
Q ss_pred cccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 158 RIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.++=.......++.++..+ +.|.|.|++|+||||+|+.++...
T Consensus 46 ~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l 88 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARL 88 (327)
T ss_pred CccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHH
Confidence 3343444556677777553 569999999999999999999877
No 463
>PRK05748 replicative DNA helicase; Provisional
Probab=95.82 E-value=0.93 Score=43.67 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=34.3
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGK 232 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 232 (347)
...++.|-|.+|+|||+++..+.... ..... ..+++++. .-+..++...++.
T Consensus 202 ~G~livIaarpg~GKT~~al~ia~~~-a~~~g-~~v~~fSl--Ems~~~l~~R~l~ 253 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAFALNIAQNV-ATKTD-KNVAIFSL--EMGAESLVMRMLC 253 (448)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHH-HHhCC-CeEEEEeC--CCCHHHHHHHHHH
Confidence 45688999999999999999998765 22222 24555543 3345566655553
No 464
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.82 E-value=0.028 Score=43.74 Aligned_cols=37 Identities=19% Similarity=0.002 Sum_probs=26.7
Q ss_pred EEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEe
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVV 217 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v 217 (347)
.+.|.|..|.|||+.+..+.... ........++|++.
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~-~~~~~~~~~lv~~p 38 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL-LDSLKGGQVLVLAP 38 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH-HhcccCCCEEEEcC
Confidence 46789999999999998887776 33334456666643
No 465
>PRK13948 shikimate kinase; Provisional
Probab=95.82 E-value=0.0092 Score=49.89 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=23.3
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+.|.++|+.|+||||+++.+....
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998875
No 466
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.81 E-value=0.014 Score=51.12 Aligned_cols=33 Identities=33% Similarity=0.359 Sum_probs=22.1
Q ss_pred EEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEec
Q 038882 183 LYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVS 218 (347)
Q Consensus 183 I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs 218 (347)
|+|++|+||||+++.+.+.. ...-..++-|+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~---~~~~~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL---ESNGRDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH---TTT-S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHH---HhccCCceEEEcc
Confidence 68999999999999999887 3333345555543
No 467
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.80 E-value=0.064 Score=44.24 Aligned_cols=80 Identities=20% Similarity=0.264 Sum_probs=44.6
Q ss_pred EEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHHhcC
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSN 259 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 259 (347)
++.|.|.+|+|||++|.++.... ...++++.-...++.+ ..+.|...-.... ......+....+.+.+..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~------~~~~~y~at~~~~d~e-m~~rI~~H~~~R~---~~w~t~E~~~~l~~~l~~ 70 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAEL------GGPVTYIATAEAFDDE-MAERIARHRKRRP---AHWRTIETPRDLVSALKE 70 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc------CCCeEEEEccCcCCHH-HHHHHHHHHHhCC---CCceEeecHHHHHHHHHh
Confidence 36799999999999999987542 2356677666666542 3333322111111 112222233344444422
Q ss_pred --CcEEEEEeCC
Q 038882 260 --KKFVLLLDDV 269 (347)
Q Consensus 260 --kr~LlVlDdv 269 (347)
+.-.+++|.+
T Consensus 71 ~~~~~~VLIDcl 82 (169)
T cd00544 71 LDPGDVVLIDCL 82 (169)
T ss_pred cCCCCEEEEEcH
Confidence 3447999987
No 468
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=95.80 E-value=0.057 Score=51.34 Aligned_cols=90 Identities=19% Similarity=0.282 Sum_probs=51.5
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecC-CCChHHHHHHHHHhcCCCCc----cccccChH---
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSK-DLNLEKVQEDIGKKIDLFSE----SWKNKSLV--- 247 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~----~~~~~~~~--- 247 (347)
.....++|.|.+|+|||||.+.+.... ..+......+.. ...+....++.......... .....+..
T Consensus 143 ~~Gq~~~I~G~sG~GKStLl~~I~~~~-----~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~ 217 (422)
T TIGR02546 143 GEGQRIGIFAGAGVGKSTLLGMIARGA-----SADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERL 217 (422)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhCCC-----CCCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHH
Confidence 456788999999999999999988754 223333344433 34455555555443211100 00111111
Q ss_pred ---HHHHHHHHHh--cCCcEEEEEeCCC
Q 038882 248 ---EKSCAIFKIL--SNKKFVLLLDDVW 270 (347)
Q Consensus 248 ---~~~~~l~~~l--~~kr~LlVlDdv~ 270 (347)
.....+.+++ ++++.|+++|++-
T Consensus 218 ~~~~~a~~~AE~f~~~g~~Vl~~~Dslt 245 (422)
T TIGR02546 218 KAAYTATAIAEYFRDQGKRVLLMMDSLT 245 (422)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCch
Confidence 2223345555 4689999999994
No 469
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=95.79 E-value=0.042 Score=52.39 Aligned_cols=89 Identities=22% Similarity=0.305 Sum_probs=48.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecC-CCChHHHHHHHHHhcCCCCc----cccccCh-----
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSK-DLNLEKVQEDIGKKIDLFSE----SWKNKSL----- 246 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~----~~~~~~~----- 246 (347)
....++|.|..|+|||||++.+.... .. +......+.. .....++..+.+..-..... ...+.+.
T Consensus 162 ~Gq~~~I~G~sG~GKStLl~~I~~~~----~~-~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~~p~~r~~ 236 (440)
T TIGR01026 162 KGQRIGIFAGSGVGKSTLLGMIARNT----EA-DVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLK 236 (440)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CC-CEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCCCHHHHHH
Confidence 45688999999999999999887654 22 2233333333 23344455444332111000 0001111
Q ss_pred -HHHHHHHHHHh--cCCcEEEEEeCCC
Q 038882 247 -VEKSCAIFKIL--SNKKFVLLLDDVW 270 (347)
Q Consensus 247 -~~~~~~l~~~l--~~kr~LlVlDdv~ 270 (347)
......+.+++ ++++.||++||+-
T Consensus 237 ~~~~a~t~AE~frd~G~~Vll~~DslT 263 (440)
T TIGR01026 237 GAYVATAIAEYFRDQGKDVLLLMDSVT 263 (440)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeChH
Confidence 12223344555 5789999999983
No 470
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=95.77 E-value=0.045 Score=52.33 Aligned_cols=93 Identities=11% Similarity=0.144 Sum_probs=56.3
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCC--CEEEEEEecCCC-ChHHHHHHHHHhcCCCCcc----ccccC----
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDF--DIVIWVVVSKDL-NLEKVQEDIGKKIDLFSES----WKNKS---- 245 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f--~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~----~~~~~---- 245 (347)
....++|.|..|+|||+|+..+.+.. .....+ -.++++.+.+.. ...++++++...=...... ..+.+
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~-~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R 218 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQA-TVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVER 218 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhh-cccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHH
Confidence 45788999999999999999988865 222111 155667676654 4566666665432211000 01111
Q ss_pred --hHHHHHHHHHHhc---CCcEEEEEeCCC
Q 038882 246 --LVEKSCAIFKILS---NKKFVLLLDDVW 270 (347)
Q Consensus 246 --~~~~~~~l~~~l~---~kr~LlVlDdv~ 270 (347)
.......+.++++ +++.||++||+-
T Consensus 219 ~~a~~~a~tiAEyfr~d~G~~VLli~DslT 248 (458)
T TIGR01041 219 IVTPRMALTAAEYLAFEKDMHVLVILTDMT 248 (458)
T ss_pred HHHHHHHHHHHHHHHHccCCcEEEEEcChh
Confidence 1122334666665 688999999984
No 471
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=95.77 E-value=0.075 Score=50.25 Aligned_cols=26 Identities=46% Similarity=0.828 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|.|||||.+.+....
T Consensus 28 ~Geiv~liGpNGaGKSTLLk~LaGll 53 (402)
T PRK09536 28 EGSLVGLVGPNGAGKTTLLRAINGTL 53 (402)
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 45789999999999999999998754
No 472
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.02 Score=56.00 Aligned_cols=93 Identities=14% Similarity=0.139 Sum_probs=55.2
Q ss_pred Ccccchhh---hHHHHHHHhhccC---------ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChH
Q 038882 157 PRIIGQES---IFDDVWRCIIEEQ---------VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLE 224 (347)
Q Consensus 157 ~~~vGR~~---~~~~l~~~L~~~~---------~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 224 (347)
.++-|.++ ++.++++.|.++. .+=+.++|++|.|||.||+.+.... .-+| .+.|.+.
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA---~VPF-----f~iSGS~--- 218 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPF-----FSISGSD--- 218 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc---CCCc-----eeccchh---
Confidence 45678766 4555566666542 4567899999999999999999876 2222 1222210
Q ss_pred HHHHHHHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 038882 225 KVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEP 272 (347)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~ 272 (347)
+-++.- ............+..+.-++++++|.++..
T Consensus 219 --FVemfV----------GvGAsRVRdLF~qAkk~aP~IIFIDEiDAv 254 (596)
T COG0465 219 --FVEMFV----------GVGASRVRDLFEQAKKNAPCIIFIDEIDAV 254 (596)
T ss_pred --hhhhhc----------CCCcHHHHHHHHHhhccCCCeEEEehhhhc
Confidence 001111 111223334445555667899999998654
No 473
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.75 E-value=0.011 Score=50.29 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=24.0
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
....+|.|+|++|+||||||+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999998865
No 474
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.75 E-value=0.028 Score=47.36 Aligned_cols=24 Identities=38% Similarity=0.412 Sum_probs=22.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..|+|.|..|+||||+++.+.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999877
No 475
>PRK08760 replicative DNA helicase; Provisional
Probab=95.74 E-value=0.8 Score=44.44 Aligned_cols=52 Identities=13% Similarity=0.103 Sum_probs=33.4
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGK 232 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 232 (347)
...++.|.|.+|+|||++|..++... ...... .+++++. .-+..++...++.
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~-a~~~g~-~V~~fSl--EMs~~ql~~Rl~a 279 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYA-AIKSKK-GVAVFSM--EMSASQLAMRLIS 279 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHH-HHhcCC-ceEEEec--cCCHHHHHHHHHH
Confidence 45788999999999999999998765 222222 3444433 3344555555543
No 476
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=95.73 E-value=0.022 Score=52.82 Aligned_cols=150 Identities=19% Similarity=0.247 Sum_probs=83.9
Q ss_pred ccchhhhHHHHHHHhhc-----------------cCceEEEEEeCCCCchHHHHHHHHHhhhccCC-CCC---EEEEEE-
Q 038882 159 IIGQESIFDDVWRCIIE-----------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERH-DFD---IVIWVV- 216 (347)
Q Consensus 159 ~vGR~~~~~~l~~~L~~-----------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-~f~---~~~wv~- 216 (347)
..|-..++..|.+.+.. ...-++.|+|.+|.||||+.+++......... .|. +.+-+.
T Consensus 373 ~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~ 452 (593)
T COG2401 373 IKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPK 452 (593)
T ss_pred cccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccc
Confidence 45556677777776543 14568999999999999999999876521111 111 111111
Q ss_pred ------e----cCCCChHHHHHHHHHhcC-------------CCCcc------ccccChHHHHHHHHHHhcCCcEEEEEe
Q 038882 217 ------V----SKDLNLEKVQEDIGKKID-------------LFSES------WKNKSLVEKSCAIFKILSNKKFVLLLD 267 (347)
Q Consensus 217 ------v----s~~~~~~~~~~~i~~~l~-------------~~~~~------~~~~~~~~~~~~l~~~l~~kr~LlVlD 267 (347)
+ ...++-..+++++.+..+ ..+.. ..-.+.+.-..+|...+.+++-+++.|
T Consensus 453 nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iD 532 (593)
T COG2401 453 NTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLID 532 (593)
T ss_pred cchhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhh
Confidence 1 112233345554444332 21110 112233445577888999999999999
Q ss_pred CCCCcccc-cc--cccCCC--CCCCCcEEEEecCChhHHhhcCCCc
Q 038882 268 DVWEPVDL-TK--VGVPIP--NSTNASKVLFTTRYKEVCGKMEAHK 308 (347)
Q Consensus 268 dv~~~~~~-~~--l~~~l~--~~~~gs~iiiTtR~~~v~~~~~~~~ 308 (347)
.....-+- .. +...+. ....|+.+++.|+++++...+.++.
T Consensus 533 EF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~ 578 (593)
T COG2401 533 EFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDT 578 (593)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCce
Confidence 98654221 11 111111 1235677888888888877776554
No 477
>PLN02200 adenylate kinase family protein
Probab=95.73 E-value=0.01 Score=51.75 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+|.|.|++|+||||+|+.+...+
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4688999999999999999998765
No 478
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=95.71 E-value=1.1 Score=43.09 Aligned_cols=52 Identities=13% Similarity=0.158 Sum_probs=34.1
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGK 232 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 232 (347)
...++.|.|.+|+|||+++..+.... ..... ..++|++... +..++...++.
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~-a~~~g-~~vl~~SlEm--~~~~i~~R~~~ 245 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENA-AIKEG-KPVAFFSLEM--SAEQLAMRMLS 245 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHH-HHhCC-CeEEEEeCcC--CHHHHHHHHHH
Confidence 35689999999999999999988765 22122 3566665443 44444444443
No 479
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.71 E-value=0.13 Score=47.84 Aligned_cols=72 Identities=21% Similarity=0.258 Sum_probs=38.8
Q ss_pred hhHHHHHHHhhcc----CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCC-CChHHHHHHHHHhcCC
Q 038882 164 SIFDDVWRCIIEE----QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKD-LNLEKVQEDIGKKIDL 236 (347)
Q Consensus 164 ~~~~~l~~~L~~~----~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~ 236 (347)
+....+..++.++ +.++|.++|+.|+||||-...++..+ .....=..+..|+...- ....+-++.-++-++.
T Consensus 185 ~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~-~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~v 261 (407)
T COG1419 185 EKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARY-VMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGV 261 (407)
T ss_pred HHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHH-HhhccCcceEEEEeccchhhHHHHHHHHHHHhCC
Confidence 3444555555544 47999999999999975544444444 21222334555554332 2233333444444444
No 480
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.70 E-value=0.045 Score=51.78 Aligned_cols=90 Identities=20% Similarity=0.283 Sum_probs=50.3
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCC-ChHHHHHHHHHhcCCCCc----cccccCh----
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDL-NLEKVQEDIGKKIDLFSE----SWKNKSL---- 246 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~---- 246 (347)
.....++|+|..|+|||||++.+.+.. . -+..+...+.+.. ...++..+.+.+-+.... ...+.+.
T Consensus 135 ~~Gqri~I~G~sG~GKTtLl~~i~~~~---~--~~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~ 209 (413)
T TIGR03497 135 GKGQRVGIFAGSGVGKSTLLGMIARNA---K--ADINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRL 209 (413)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC---C--CCeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHH
Confidence 356789999999999999999887654 1 2222223344332 344555544433211100 0001111
Q ss_pred --HHHHHHHHHHh--cCCcEEEEEeCCC
Q 038882 247 --VEKSCAIFKIL--SNKKFVLLLDDVW 270 (347)
Q Consensus 247 --~~~~~~l~~~l--~~kr~LlVlDdv~ 270 (347)
......+.+++ +++..||++||+-
T Consensus 210 ~~~~~a~tiAEyfr~~G~~Vll~~Dslt 237 (413)
T TIGR03497 210 KAAFTATAIAEYFRDQGKDVLLMMDSVT 237 (413)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcCcH
Confidence 12233455555 4789999999983
No 481
>PRK14532 adenylate kinase; Provisional
Probab=95.70 E-value=0.0088 Score=50.25 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=20.0
Q ss_pred EEEEeCCCCchHHHHHHHHHhh
Q 038882 181 IGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 181 i~I~G~~GiGKTtLa~~v~~~~ 202 (347)
|.+.|++|+||||+|+.+...+
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7789999999999999998765
No 482
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.68 E-value=0.01 Score=49.86 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+|.|+|++|+|||||++.+....
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 5789999999999999999998754
No 483
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.021 Score=52.38 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=33.3
Q ss_pred cccchhhhHHHHHHHhhc------------cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 158 RIIGQESIFDDVWRCIIE------------EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
++.|.++..+-|.+...- ..-+-|.++|++|.|||-||+.|+...
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh
Confidence 456666666666555432 145678899999999999999999875
No 484
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.66 E-value=0.038 Score=55.21 Aligned_cols=26 Identities=27% Similarity=0.486 Sum_probs=23.4
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+...++|+|..|.|||||++.+...+
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 56789999999999999999998765
No 485
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.66 E-value=0.039 Score=47.24 Aligned_cols=116 Identities=17% Similarity=0.117 Sum_probs=62.0
Q ss_pred HHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCE--EEEEEecCCCChHHHHHHHHHhcCCCC--------
Q 038882 169 VWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDI--VIWVVVSKDLNLEKVQEDIGKKIDLFS-------- 238 (347)
Q Consensus 169 l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~--~~wv~vs~~~~~~~~~~~i~~~l~~~~-------- 238 (347)
++..|-.....-..|.|++|+|||||.+.++.-.......|-. +.-|.-++ +|+..+....
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDers---------EIag~~~gvpq~~~g~R~ 198 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERS---------EIAGCLNGVPQHGRGRRM 198 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccc---------hhhccccCCchhhhhhhh
Confidence 4555555555557899999999999999998876323334532 22222111 2222111100
Q ss_pred ccccccCh-HHHHHHHHHHhcCCcEEEEEeCCCCcccccccccCCCCCCCCcEEEEecCChh
Q 038882 239 ESWKNKSL-VEKSCAIFKILSNKKFVLLLDDVWEPVDLTKVGVPIPNSTNASKVLFTTRYKE 299 (347)
Q Consensus 239 ~~~~~~~~-~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~ 299 (347)
+-.+.... +-+...++ .--+=.+|+|++-..++-..+...+ ..|-+++.|..-..
T Consensus 199 dVld~cpk~~gmmmaIr---sm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~~ 254 (308)
T COG3854 199 DVLDPCPKAEGMMMAIR---SMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGNG 254 (308)
T ss_pred hhcccchHHHHHHHHHH---hcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeecccc
Confidence 00011111 11112222 2257799999998776666655553 45777777765433
No 486
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.66 E-value=0.011 Score=44.62 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=19.9
Q ss_pred ceEEEEEeCCCCchHHHHHHHH
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLN 199 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~ 199 (347)
...++|.|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999875
No 487
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=95.65 E-value=0.058 Score=51.74 Aligned_cols=92 Identities=21% Similarity=0.350 Sum_probs=58.2
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCC-ChHHHHHHHHHhcCCCCc------c-----cccc
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDL-NLEKVQEDIGKKIDLFSE------S-----WKNK 244 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~------~-----~~~~ 244 (347)
....++|.|.+|+|||+|+.++.... . ..+-+.++++-+.+.. ...+++..+...-..... . ..+.
T Consensus 160 kGQR~gIfgg~GvGKs~L~~~~~~~~-~-~~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~ 237 (494)
T CHL00060 160 RGGKIGLFGGAGVGKTVLIMELINNI-A-KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNE 237 (494)
T ss_pred cCCEEeeecCCCCChhHHHHHHHHHH-H-HhcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCC
Confidence 46789999999999999999988774 1 1222677888887764 456777766652111000 0 0011
Q ss_pred C------hHHHHHHHHHHhc--CC-cEEEEEeCCC
Q 038882 245 S------LVEKSCAIFKILS--NK-KFVLLLDDVW 270 (347)
Q Consensus 245 ~------~~~~~~~l~~~l~--~k-r~LlVlDdv~ 270 (347)
+ .......+.++++ ++ +.||++||+-
T Consensus 238 p~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslT 272 (494)
T CHL00060 238 PPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIF 272 (494)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccch
Confidence 1 1133445777774 34 8999999984
No 488
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=95.65 E-value=0.014 Score=60.51 Aligned_cols=140 Identities=17% Similarity=0.154 Sum_probs=74.8
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhhhccC-CCCCEEEEEEecCCC----ChH--HHHHHHHHhcCCCCccccccChHHHH
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKLCHER-HDFDIVIWVVVSKDL----NLE--KVQEDIGKKIDLFSESWKNKSLVEKS 250 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~~f~~~~wv~vs~~~----~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~ 250 (347)
..-+.|+|.+|.||||+.+.++-...... ..-+..+++.+.... ... .+..-+...+... ....+..
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~------~~~~~~~ 295 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQ------GIAKQLI 295 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhcc------CCcchhh
Confidence 44889999999999999998876651111 112344454433110 011 2222222222211 1112222
Q ss_pred HHHHHHhcCCcEEEEEeCCCCcc------cccccccCCCCCCCCcEEEEecCChhHHhhcCCCceeecCCCCHHHHHHHH
Q 038882 251 CAIFKILSNKKFVLLLDDVWEPV------DLTKVGVPIPNSTNASKVLFTTRYKEVCGKMEAHKKLRVECLTADEAWMLF 324 (347)
Q Consensus 251 ~~l~~~l~~kr~LlVlDdv~~~~------~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf 324 (347)
....++++..++++++|.++... ....+.. +...-+.+.+|+|+|....-........+.+..+.++.-....
T Consensus 296 ~~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~-f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~ 374 (824)
T COG5635 296 EAHQELLKTGKLLLLLDGLDELEPKNQRALIREINK-FLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFI 374 (824)
T ss_pred HHHHHHHhccchhhHhhccchhhhhhHHHHHHHHHH-HhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHH
Confidence 22367889999999999987641 1111211 2223357899999987765444333344555555555444333
No 489
>PRK13409 putative ATPase RIL; Provisional
Probab=95.65 E-value=0.047 Score=54.39 Aligned_cols=122 Identities=23% Similarity=0.186 Sum_probs=64.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEE----E-ecCC------CChHH-------------HHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWV----V-VSKD------LNLEK-------------VQEDIGK 232 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv----~-vs~~------~~~~~-------------~~~~i~~ 232 (347)
...+++|+|+.|+|||||++.++... . ...+.+++ . +.+. .++.+ ...+++.
T Consensus 364 ~Geiv~l~G~NGsGKSTLlk~L~Gl~-~---p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~ 439 (590)
T PRK13409 364 EGEVIGIVGPNGIGKTTFAKLLAGVL-K---PDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIK 439 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-C---CCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHH
Confidence 45699999999999999999998764 1 11122211 1 1111 11221 1233444
Q ss_pred hcCCCC---ccccccCh-HHHHHHHHHHhcCCcEEEEEeCCCCccccc------ccccCCCCCCCCcEEEEecCChhHHh
Q 038882 233 KIDLFS---ESWKNKSL-VEKSCAIFKILSNKKFVLLLDDVWEPVDLT------KVGVPIPNSTNASKVLFTTRYKEVCG 302 (347)
Q Consensus 233 ~l~~~~---~~~~~~~~-~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~------~l~~~l~~~~~gs~iiiTtR~~~v~~ 302 (347)
.++... ......+. +...-.+...|..++-+++||+--+.-+.. .+...+. ...|..||++|.+...+.
T Consensus 440 ~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~-~~~g~tviivsHD~~~~~ 518 (590)
T PRK13409 440 PLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIA-EEREATALVVDHDIYMID 518 (590)
T ss_pred HCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH-HhCCCEEEEEeCCHHHHH
Confidence 444321 01111222 233344666677788999999986543322 1122221 123566888888877654
Q ss_pred h
Q 038882 303 K 303 (347)
Q Consensus 303 ~ 303 (347)
.
T Consensus 519 ~ 519 (590)
T PRK13409 519 Y 519 (590)
T ss_pred H
Confidence 4
No 490
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.64 E-value=0.0095 Score=50.16 Aligned_cols=22 Identities=41% Similarity=0.505 Sum_probs=20.1
Q ss_pred EEEEeCCCCchHHHHHHHHHhh
Q 038882 181 IGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 181 i~I~G~~GiGKTtLa~~v~~~~ 202 (347)
|.|.|++|+||||+|+.+...+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998764
No 491
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.64 E-value=0.074 Score=53.84 Aligned_cols=25 Identities=40% Similarity=0.618 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..++.++|+.|+||||++..++..+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 4799999999999999999988765
No 492
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.63 E-value=0.017 Score=50.06 Aligned_cols=120 Identities=14% Similarity=0.174 Sum_probs=59.4
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCcccc-ccChHHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWK-NKSLVEKSCAIFK 255 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~l~~ 255 (347)
+.+++.|.|+.|.||||+.+.+.--..-.+.. ++|.... ..-.+...++..++..+.... ......-...+..
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~g----~~vpa~~--~~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~ 102 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVLMAQIG----CFVPCDS--ADIPIVDCILARVGASDSQLKGVSTFMAEMLETAA 102 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHHHHhC----CCcCccc--EEEeccceeEeeeccccchhcCcChHHHHHHHHHH
Confidence 45799999999999999999876432000000 1221111 011122333333333211111 1122222233334
Q ss_pred Hh--cCCcEEEEEeCC---CCcccccc----cccCCCCCCCCcEEEEecCChhHHhh
Q 038882 256 IL--SNKKFVLLLDDV---WEPVDLTK----VGVPIPNSTNASKVLFTTRYKEVCGK 303 (347)
Q Consensus 256 ~l--~~kr~LlVlDdv---~~~~~~~~----l~~~l~~~~~gs~iiiTtR~~~v~~~ 303 (347)
.+ ..++-|++||+. .+..+-.. +...+.. ..|+.+|+||...++...
T Consensus 103 il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~ 158 (222)
T cd03285 103 ILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIAT-QIKCFCLFATHFHELTAL 158 (222)
T ss_pred HHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHH
Confidence 44 357899999999 33322111 1112221 347789999997666543
No 493
>PRK13946 shikimate kinase; Provisional
Probab=95.63 E-value=0.011 Score=49.49 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=22.5
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.+.|.++|++|+||||+++.+.+..
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999875
No 494
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.62 E-value=0.0098 Score=51.47 Aligned_cols=96 Identities=18% Similarity=0.331 Sum_probs=54.4
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhcc---------------------CCCCCEEEEEEecCCC------------Ch
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHE---------------------RHDFDIVIWVVVSKDL------------NL 223 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---------------------~~~f~~~~wv~vs~~~------------~~ 223 (347)
..-.++|+|++|+|||||.+.++.-.... -+.+..--|-++-++. ..
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~ 107 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEA 107 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchHhH
Confidence 45799999999999999999998644100 0111222344433321 12
Q ss_pred HHHHHHHHHhcCCCCc--cc-cc-cChHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 038882 224 EKVQEDIGKKIDLFSE--SW-KN-KSLVEKSCAIFKILSNKKFVLLLDDVWEP 272 (347)
Q Consensus 224 ~~~~~~i~~~l~~~~~--~~-~~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~ 272 (347)
.....+++..++..+- .. .. +......-.+.+.|..++=+|.+|+-...
T Consensus 108 ~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgA 160 (248)
T COG1116 108 RERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGA 160 (248)
T ss_pred HHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcch
Confidence 3356666666665321 11 11 12223334566667778888899987543
No 495
>COG3910 Predicted ATPase [General function prediction only]
Probab=95.62 E-value=0.044 Score=45.41 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=22.2
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..++-.|+|..|+|||||...+.-..
T Consensus 36 ~apIT~i~GENGsGKSTLLEaiA~~~ 61 (233)
T COG3910 36 RAPITFITGENGSGKSTLLEAIAAGM 61 (233)
T ss_pred cCceEEEEcCCCccHHHHHHHHHhhc
Confidence 46788999999999999999887543
No 496
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.61 E-value=0.012 Score=48.23 Aligned_cols=24 Identities=38% Similarity=0.390 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+.|.++||.|+||||+.+.++...
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L 26 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKAL 26 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHc
Confidence 457899999999999999999876
No 497
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=95.60 E-value=0.06 Score=53.01 Aligned_cols=27 Identities=33% Similarity=0.423 Sum_probs=23.8
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
++...++|+|+.|.|||||++.+..-+
T Consensus 346 ~~G~~~~ivG~sGsGKSTL~~ll~g~~ 372 (529)
T TIGR02857 346 PPGERVALVGPSGAGKSTLLNLLLGFV 372 (529)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356799999999999999999998765
No 498
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.60 E-value=0.0099 Score=48.69 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=17.1
Q ss_pred EEEEeCCCCchHHHHHHHHHh
Q 038882 181 IGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 181 i~I~G~~GiGKTtLa~~v~~~ 201 (347)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999754
No 499
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=95.60 E-value=0.069 Score=54.90 Aligned_cols=120 Identities=19% Similarity=0.158 Sum_probs=58.2
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccc-cccChHHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESW-KNKSLVEKSCAIFK 255 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 255 (347)
+.+++.|+|+.+.||||+.+.+.-..... .+-++|++... ..-.++..|+..++..+... ...+...-...+..
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~ma----q~G~~vpa~~~-~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~ 400 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMA----KSGLPIPANEP-SEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVR 400 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHH----HhCCCcccCCC-ccccccceEEEecCCccchhhchhHHHHHHHHHHH
Confidence 45789999999999999999886432000 01111222110 00111111221222110000 00111111222233
Q ss_pred Hhc--CCcEEEEEeCCCCccccc---cc----ccCCCCCCCCcEEEEecCChhHHhh
Q 038882 256 ILS--NKKFVLLLDDVWEPVDLT---KV----GVPIPNSTNASKVLFTTRYKEVCGK 303 (347)
Q Consensus 256 ~l~--~kr~LlVlDdv~~~~~~~---~l----~~~l~~~~~gs~iiiTtR~~~v~~~ 303 (347)
.+. ..+-|++||+.....+.. .+ ...+. ..|+.+|+||....+...
T Consensus 401 Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~ 455 (782)
T PRK00409 401 ILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKAL 455 (782)
T ss_pred HHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHH
Confidence 332 478899999996653321 12 22222 347899999999877544
No 500
>PRK04182 cytidylate kinase; Provisional
Probab=95.58 E-value=0.011 Score=48.96 Aligned_cols=23 Identities=48% Similarity=0.681 Sum_probs=21.3
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998865
Done!