Query 038882
Match_columns 347
No_of_seqs 347 out of 2154
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 06:31:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038882.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038882hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 5.5E-33 1.9E-37 271.3 16.6 184 157-347 128-333 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.9 8.9E-28 3.1E-32 255.0 13.7 185 156-347 123-324 (1249)
3 1vt4_I APAF-1 related killer D 99.9 2.6E-28 8.8E-33 245.0 8.2 183 157-347 128-330 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.9 9.2E-26 3.1E-30 222.4 14.3 182 156-347 123-324 (591)
5 3qfl_A MLA10; coiled-coil, (CC 99.7 9.9E-17 3.4E-21 122.6 9.4 83 11-100 1-84 (115)
6 2qen_A Walker-type ATPase; unk 99.7 1.4E-16 4.9E-21 146.0 11.1 181 157-347 12-242 (350)
7 2fna_A Conserved hypothetical 99.6 1.5E-15 5.2E-20 139.5 12.8 180 157-347 13-246 (357)
8 1w5s_A Origin recognition comp 99.6 1.6E-15 5.4E-20 142.4 12.4 187 157-345 22-260 (412)
9 2qby_B CDC6 homolog 3, cell di 99.5 5.5E-14 1.9E-18 130.7 13.4 189 157-345 20-239 (384)
10 2qby_A CDC6 homolog 1, cell di 99.5 5.4E-14 1.8E-18 130.5 11.8 187 157-345 20-239 (386)
11 1fnn_A CDC6P, cell division co 99.5 7.6E-13 2.6E-17 123.0 17.8 180 157-340 17-227 (389)
12 2v1u_A Cell division control p 99.5 2.5E-13 8.7E-18 126.1 13.0 186 157-344 19-242 (387)
13 1njg_A DNA polymerase III subu 99.4 5.8E-13 2E-17 115.1 11.8 182 157-346 23-223 (250)
14 2chg_A Replication factor C sm 99.4 1.1E-12 3.7E-17 111.9 12.9 171 157-345 17-198 (226)
15 1sxj_B Activator 1 37 kDa subu 99.3 1.1E-11 3.8E-16 112.2 10.7 171 157-345 21-203 (323)
16 1iqp_A RFCS; clamp loader, ext 99.1 8.4E-11 2.9E-15 106.5 7.5 168 157-345 25-206 (327)
17 2chq_A Replication factor C sm 99.0 8.7E-10 3E-14 99.4 10.7 167 157-345 17-198 (319)
18 3te6_A Regulatory protein SIR3 99.0 2.8E-09 9.7E-14 95.7 13.1 168 158-328 21-211 (318)
19 1jr3_A DNA polymerase III subu 99.0 3.5E-09 1.2E-13 97.7 12.7 180 157-345 16-215 (373)
20 1jbk_A CLPB protein; beta barr 98.9 1.2E-09 4E-14 90.6 6.9 151 157-324 22-194 (195)
21 1hqc_A RUVB; extended AAA-ATPa 98.9 6.9E-09 2.4E-13 93.8 9.6 159 157-345 12-205 (324)
22 3bos_A Putative DNA replicatio 98.8 1.7E-09 6E-14 93.2 4.0 158 157-344 28-210 (242)
23 3h4m_A Proteasome-activating n 98.8 2.5E-08 8.4E-13 88.5 11.5 164 157-343 17-222 (285)
24 1sxj_E Activator 1 40 kDa subu 98.8 1.4E-08 4.9E-13 92.9 8.9 180 157-344 14-230 (354)
25 2z4s_A Chromosomal replication 98.8 3.4E-08 1.2E-12 93.3 11.4 169 158-344 106-299 (440)
26 1sxj_D Activator 1 41 kDa subu 98.8 1.5E-08 5.1E-13 92.7 8.5 181 157-345 37-229 (353)
27 3pvs_A Replication-associated 98.7 1.2E-07 4E-12 89.6 14.1 159 157-344 26-208 (447)
28 1d2n_A N-ethylmaleimide-sensit 98.7 1.1E-07 3.8E-12 83.8 13.0 166 157-344 33-230 (272)
29 2qz4_A Paraplegin; AAA+, SPG7, 98.7 2.2E-07 7.5E-12 81.2 14.6 165 157-344 6-214 (262)
30 1sxj_A Activator 1 95 kDa subu 98.7 9.7E-08 3.3E-12 92.1 11.4 173 157-344 39-245 (516)
31 1xwi_A SKD1 protein; VPS4B, AA 98.7 1.2E-06 4.2E-11 79.1 17.8 164 157-344 12-215 (322)
32 3pfi_A Holliday junction ATP-d 98.7 6E-07 2.1E-11 81.6 15.6 157 157-344 29-220 (338)
33 3syl_A Protein CBBX; photosynt 98.6 1E-07 3.4E-12 85.6 10.0 150 158-328 32-217 (309)
34 3uk6_A RUVB-like 2; hexameric 98.6 1.3E-07 4.4E-12 87.1 10.9 180 157-344 44-296 (368)
35 1a5t_A Delta prime, HOLB; zinc 98.6 4.9E-07 1.7E-11 82.2 14.2 174 163-345 8-199 (334)
36 3u61_B DNA polymerase accessor 98.6 8.9E-08 3E-12 86.6 9.2 160 157-344 26-209 (324)
37 3eie_A Vacuolar protein sortin 98.6 3.3E-07 1.1E-11 82.9 12.8 161 157-343 18-219 (322)
38 1sxj_C Activator 1 40 kDa subu 98.6 2E-07 6.8E-12 85.0 10.4 163 157-344 25-205 (340)
39 3d8b_A Fidgetin-like protein 1 98.6 9.5E-07 3.2E-11 81.0 14.1 163 157-343 84-286 (357)
40 2zan_A Vacuolar protein sortin 98.5 3.9E-06 1.3E-10 79.2 18.3 166 157-344 134-337 (444)
41 4b4t_J 26S protease regulatory 98.5 9.2E-07 3.1E-11 81.5 13.2 164 157-343 148-353 (405)
42 3vfd_A Spastin; ATPase, microt 98.5 1.5E-06 5.1E-11 80.7 14.9 165 157-344 115-318 (389)
43 3b9p_A CG5977-PA, isoform A; A 98.5 2E-06 6.9E-11 76.6 15.2 162 157-344 21-225 (297)
44 3cf0_A Transitional endoplasmi 98.5 1.2E-06 4.2E-11 78.3 13.7 165 157-344 15-221 (301)
45 1l8q_A Chromosomal replication 98.5 3.3E-07 1.1E-11 82.9 9.8 164 157-343 11-200 (324)
46 2qp9_X Vacuolar protein sortin 98.5 1.9E-06 6.5E-11 79.0 14.5 162 157-343 51-252 (355)
47 2p65_A Hypothetical protein PF 98.5 4.1E-07 1.4E-11 74.7 8.9 46 157-202 22-67 (187)
48 3pxg_A Negative regulator of g 98.5 1.1E-06 3.8E-11 83.6 12.5 148 157-328 180-338 (468)
49 4b4t_L 26S protease subunit RP 98.5 1.4E-06 4.8E-11 81.4 12.6 164 157-343 181-386 (437)
50 1qvr_A CLPB protein; coiled co 98.4 7.3E-07 2.5E-11 91.1 11.2 168 157-342 170-370 (854)
51 2gno_A DNA polymerase III, gam 98.4 7.2E-07 2.5E-11 79.9 9.8 147 161-328 1-152 (305)
52 4b4t_H 26S protease regulatory 98.4 4.8E-06 1.6E-10 77.8 13.9 164 157-343 209-414 (467)
53 1ofh_A ATP-dependent HSL prote 98.4 3.3E-06 1.1E-10 75.4 12.3 46 157-202 15-74 (310)
54 4b4t_M 26S protease regulatory 98.3 1.9E-06 6.4E-11 80.5 9.8 163 157-343 181-386 (434)
55 4b4t_K 26S protease regulatory 98.3 2.5E-06 8.4E-11 79.6 10.5 164 157-343 172-378 (428)
56 3n70_A Transport activator; si 98.3 6.7E-07 2.3E-11 71.0 5.6 45 158-202 2-48 (145)
57 3hu3_A Transitional endoplasmi 98.3 2.8E-06 9.7E-11 81.0 10.7 164 157-343 204-406 (489)
58 4b4t_I 26S protease regulatory 98.3 7.4E-06 2.5E-10 75.8 12.8 163 157-343 182-387 (437)
59 3ec2_A DNA replication protein 98.2 1E-06 3.5E-11 72.4 5.5 151 162-345 19-179 (180)
60 1r6b_X CLPA protein; AAA+, N-t 98.2 1.9E-05 6.5E-10 79.7 15.1 154 157-327 186-361 (758)
61 2r62_A Cell division protease 98.2 3.7E-06 1.3E-10 73.7 8.3 149 157-328 11-196 (268)
62 3pxi_A Negative regulator of g 98.2 5.2E-06 1.8E-10 83.7 10.5 149 157-328 180-338 (758)
63 4fcw_A Chaperone protein CLPB; 98.2 4.4E-06 1.5E-10 74.8 8.8 46 157-202 17-71 (311)
64 2ce7_A Cell division protein F 98.2 1.3E-05 4.6E-10 75.8 12.1 165 157-344 16-221 (476)
65 2bjv_A PSP operon transcriptio 98.1 8.3E-06 2.8E-10 71.3 8.7 46 157-202 6-53 (265)
66 1lv7_A FTSH; alpha/beta domain 98.1 3E-05 1E-09 67.4 12.2 163 157-342 12-215 (257)
67 2kjq_A DNAA-related protein; s 98.0 3.2E-06 1.1E-10 67.4 4.4 43 157-202 18-60 (149)
68 1ojl_A Transcriptional regulat 98.0 3E-05 1E-09 69.3 10.8 46 157-202 2-49 (304)
69 2w58_A DNAI, primosome compone 98.0 2E-05 6.9E-10 65.8 8.6 113 165-298 37-159 (202)
70 3co5_A Putative two-component 98.0 2E-06 6.7E-11 68.1 1.6 46 157-202 4-51 (143)
71 3cf2_A TER ATPase, transitiona 97.9 2.2E-05 7.5E-10 78.7 9.2 163 158-343 205-406 (806)
72 3pxi_A Negative regulator of g 97.9 6.5E-06 2.2E-10 83.0 5.5 145 157-328 491-675 (758)
73 1in4_A RUVB, holliday junction 97.9 5.7E-05 1.9E-09 68.5 11.2 46 157-202 25-75 (334)
74 2c9o_A RUVB-like 1; hexameric 97.9 6.7E-05 2.3E-09 71.0 11.5 46 157-202 37-87 (456)
75 3m6a_A ATP-dependent protease 97.9 0.00014 4.7E-09 70.3 13.0 154 157-328 81-266 (543)
76 3t15_A Ribulose bisphosphate c 97.8 8E-05 2.7E-09 66.2 10.0 25 178-202 36-60 (293)
77 2x8a_A Nuclear valosin-contain 97.7 0.00056 1.9E-08 60.0 12.8 148 157-328 10-191 (274)
78 1ypw_A Transitional endoplasmi 97.6 0.00012 4.1E-09 74.1 9.0 149 157-328 204-385 (806)
79 1ixz_A ATP-dependent metallopr 97.6 0.00071 2.4E-08 58.5 12.4 163 157-343 16-220 (254)
80 1qvr_A CLPB protein; coiled co 97.6 0.00018 6.3E-09 73.4 9.3 46 157-202 558-612 (854)
81 1r6b_X CLPA protein; AAA+, N-t 97.6 0.00012 4E-09 73.9 7.7 46 157-202 458-512 (758)
82 2dhr_A FTSH; AAA+ protein, hex 97.6 0.0007 2.4E-08 64.5 12.5 160 157-343 31-235 (499)
83 2cvh_A DNA repair and recombin 97.5 0.00028 9.6E-09 59.3 8.8 89 177-272 19-117 (220)
84 1iy2_A ATP-dependent metallopr 97.5 0.0004 1.4E-08 61.0 9.5 163 157-343 40-244 (278)
85 2vhj_A Ntpase P4, P4; non- hyd 97.5 8.2E-05 2.8E-09 66.3 4.9 70 178-272 123-194 (331)
86 1n0w_A DNA repair protein RAD5 97.5 0.00045 1.5E-08 59.0 9.4 94 177-272 23-131 (243)
87 1g5t_A COB(I)alamin adenosyltr 97.4 0.00015 5.1E-09 59.9 5.2 118 178-299 28-164 (196)
88 3hr8_A Protein RECA; alpha and 97.4 0.00057 1.9E-08 62.1 9.4 88 177-272 60-151 (356)
89 2z43_A DNA repair and recombin 97.4 0.001 3.5E-08 59.8 10.7 94 177-271 106-214 (324)
90 1v5w_A DMC1, meiotic recombina 97.3 0.0013 4.5E-08 59.7 10.9 94 177-271 121-230 (343)
91 3io5_A Recombination and repai 97.3 0.002 6.8E-08 57.3 11.0 88 179-272 29-123 (333)
92 2b8t_A Thymidine kinase; deoxy 97.3 0.00013 4.6E-09 61.8 3.3 112 177-297 11-125 (223)
93 2qgz_A Helicase loader, putati 97.2 0.0005 1.7E-08 61.4 6.6 40 163-202 134-176 (308)
94 1jr3_D DNA polymerase III, del 97.2 0.0034 1.2E-07 56.7 11.9 152 169-345 9-179 (343)
95 2zr9_A Protein RECA, recombina 97.2 0.0016 5.4E-08 59.2 9.4 87 177-271 60-150 (349)
96 2i1q_A DNA repair and recombin 97.1 0.0015 5.1E-08 58.6 8.8 94 177-271 97-215 (322)
97 3cf2_A TER ATPase, transitiona 97.1 0.00043 1.5E-08 69.5 5.6 163 157-343 477-682 (806)
98 2w0m_A SSO2452; RECA, SSPF, un 97.1 0.0018 6E-08 54.7 8.6 116 177-298 22-168 (235)
99 4a74_A DNA repair and recombin 97.1 0.0035 1.2E-07 52.8 10.4 94 177-271 24-136 (231)
100 1xp8_A RECA protein, recombina 97.1 0.0023 8E-08 58.4 9.7 87 177-271 73-163 (366)
101 2cbz_A Multidrug resistance-as 97.0 0.0025 8.4E-08 54.6 8.5 26 177-202 30-55 (237)
102 3ice_A Transcription terminati 97.0 0.00063 2.2E-08 62.0 4.9 51 170-221 165-216 (422)
103 1u94_A RECA protein, recombina 97.0 0.0025 8.6E-08 58.0 9.0 87 177-271 62-152 (356)
104 2pze_A Cystic fibrosis transme 97.0 0.0044 1.5E-07 52.7 10.0 26 177-202 33-58 (229)
105 1rz3_A Hypothetical protein rb 97.0 0.0011 3.7E-08 55.2 5.9 42 161-202 2-46 (201)
106 3lda_A DNA repair protein RAD5 96.9 0.0055 1.9E-07 56.6 10.8 94 177-271 177-284 (400)
107 1pzn_A RAD51, DNA repair and r 96.9 0.0035 1.2E-07 57.0 9.3 94 177-272 130-243 (349)
108 2orw_A Thymidine kinase; TMTK, 96.8 7.3E-05 2.5E-09 61.6 -2.3 24 179-202 4-27 (184)
109 3bh0_A DNAB-like replicative h 96.8 0.0051 1.7E-07 55.0 9.5 51 177-232 67-117 (315)
110 2r44_A Uncharacterized protein 96.8 0.00089 3E-08 60.3 4.4 44 157-202 27-70 (331)
111 3c8u_A Fructokinase; YP_612366 96.8 0.0014 4.7E-08 54.9 5.2 38 165-202 7-46 (208)
112 2px0_A Flagellar biosynthesis 96.8 0.0068 2.3E-07 53.7 9.9 85 178-268 105-190 (296)
113 3jvv_A Twitching mobility prot 96.7 0.0014 4.8E-08 59.7 5.1 114 176-301 121-234 (356)
114 1g8p_A Magnesium-chelatase 38 96.7 0.00095 3.3E-08 60.4 3.9 46 157-202 24-69 (350)
115 2dr3_A UPF0273 protein PH0284; 96.7 0.0049 1.7E-07 52.5 8.2 48 177-229 22-69 (247)
116 3kb2_A SPBC2 prophage-derived 96.7 0.0011 3.8E-08 53.3 3.6 24 179-202 2-25 (173)
117 1sky_E F1-ATPase, F1-ATP synth 96.7 0.0059 2E-07 57.3 8.8 92 177-270 150-255 (473)
118 3nbx_X ATPase RAVA; AAA+ ATPas 96.6 0.0014 4.6E-08 62.5 4.6 44 157-202 22-65 (500)
119 1qhx_A CPT, protein (chloramph 96.6 0.0011 3.7E-08 53.8 3.4 24 179-202 4-27 (178)
120 1zp6_A Hypothetical protein AT 96.6 0.0014 4.7E-08 53.8 3.7 25 177-201 8-32 (191)
121 3lw7_A Adenylate kinase relate 96.6 0.0012 4.1E-08 53.0 3.3 23 179-202 2-24 (179)
122 3vaa_A Shikimate kinase, SK; s 96.6 0.0015 5E-08 54.2 3.7 26 177-202 24-49 (199)
123 3hws_A ATP-dependent CLP prote 96.5 0.002 6.7E-08 58.9 4.8 45 158-202 16-75 (363)
124 3uie_A Adenylyl-sulfate kinase 96.5 0.002 6.8E-08 53.5 4.3 27 176-202 23-49 (200)
125 4eun_A Thermoresistant glucoki 96.5 0.0017 5.7E-08 54.0 3.7 27 176-202 27-53 (200)
126 2hf9_A Probable hydrogenase ni 96.5 0.0032 1.1E-07 53.1 5.6 38 165-202 25-62 (226)
127 1cr0_A DNA primase/helicase; R 96.5 0.015 5.2E-07 51.2 10.2 26 177-202 34-59 (296)
128 1kag_A SKI, shikimate kinase I 96.5 0.0014 4.7E-08 52.9 3.1 24 179-202 5-28 (173)
129 2ck3_D ATP synthase subunit be 96.5 0.013 4.4E-07 54.9 9.8 100 169-270 143-263 (482)
130 1um8_A ATP-dependent CLP prote 96.5 0.0028 9.7E-08 58.1 5.4 46 157-202 21-96 (376)
131 1ly1_A Polynucleotide kinase; 96.5 0.0017 5.9E-08 52.5 3.6 22 179-200 3-24 (181)
132 3trf_A Shikimate kinase, SK; a 96.5 0.0018 6.1E-08 52.8 3.6 25 178-202 5-29 (185)
133 1nks_A Adenylate kinase; therm 96.4 0.002 6.9E-08 52.7 3.9 24 179-202 2-25 (194)
134 1kgd_A CASK, peripheral plasma 96.4 0.0018 6.2E-08 52.8 3.5 25 178-202 5-29 (180)
135 3e70_C DPA, signal recognition 96.4 0.021 7.1E-07 51.3 10.7 27 176-202 127-153 (328)
136 1vma_A Cell division protein F 96.4 0.01 3.5E-07 52.7 8.5 90 177-270 103-196 (306)
137 2wsm_A Hydrogenase expression/ 96.4 0.0034 1.2E-07 52.7 5.2 42 161-202 13-54 (221)
138 2yvu_A Probable adenylyl-sulfa 96.4 0.0023 7.8E-08 52.3 3.9 26 177-202 12-37 (186)
139 2rhm_A Putative kinase; P-loop 96.4 0.0025 8.4E-08 52.3 4.1 25 178-202 5-29 (193)
140 2r6a_A DNAB helicase, replicat 96.4 0.12 3.9E-06 48.6 16.1 91 177-271 202-324 (454)
141 3tqc_A Pantothenate kinase; bi 96.4 0.025 8.5E-07 50.6 10.8 43 160-202 70-116 (321)
142 3t61_A Gluconokinase; PSI-biol 96.4 0.0017 5.9E-08 53.9 3.1 25 178-202 18-42 (202)
143 1knq_A Gluconate kinase; ALFA/ 96.4 0.0026 8.9E-08 51.4 4.0 25 178-202 8-32 (175)
144 3tr0_A Guanylate kinase, GMP k 96.3 0.0022 7.5E-08 53.2 3.5 25 178-202 7-31 (205)
145 3dm5_A SRP54, signal recogniti 96.3 0.025 8.5E-07 52.8 10.9 26 177-202 99-124 (443)
146 1kht_A Adenylate kinase; phosp 96.3 0.0024 8.1E-08 52.2 3.6 24 179-202 4-27 (192)
147 3iij_A Coilin-interacting nucl 96.3 0.0023 7.7E-08 52.0 3.3 25 178-202 11-35 (180)
148 1ye8_A Protein THEP1, hypothet 96.3 0.0026 8.8E-08 51.9 3.6 23 180-202 2-24 (178)
149 2ga8_A Hypothetical 39.9 kDa p 96.3 0.0054 1.9E-07 55.4 5.9 43 160-202 2-48 (359)
150 1zuh_A Shikimate kinase; alpha 96.3 0.0026 8.9E-08 51.0 3.5 26 177-202 6-31 (168)
151 2bdt_A BH3686; alpha-beta prot 96.2 0.0027 9.3E-08 52.0 3.6 22 179-200 3-24 (189)
152 3tau_A Guanylate kinase, GMP k 96.2 0.0025 8.6E-08 53.3 3.4 26 177-202 7-32 (208)
153 3a00_A Guanylate kinase, GMP k 96.2 0.0022 7.5E-08 52.6 2.9 24 179-202 2-25 (186)
154 2qor_A Guanylate kinase; phosp 96.2 0.0023 7.8E-08 53.3 3.1 25 178-202 12-36 (204)
155 2ffh_A Protein (FFH); SRP54, s 96.2 0.017 5.9E-07 53.6 9.3 25 178-202 98-122 (425)
156 1via_A Shikimate kinase; struc 96.2 0.0024 8.2E-08 51.6 3.1 24 179-202 5-28 (175)
157 1fx0_B ATP synthase beta chain 96.2 0.025 8.6E-07 53.2 10.3 98 171-270 157-276 (498)
158 2ze6_A Isopentenyl transferase 96.2 0.003 1E-07 54.6 3.8 24 179-202 2-25 (253)
159 2jaq_A Deoxyguanosine kinase; 96.2 0.0029 9.9E-08 52.3 3.6 23 180-202 2-24 (205)
160 1g41_A Heat shock protein HSLU 96.2 0.0043 1.5E-07 58.0 5.0 46 157-202 15-74 (444)
161 2c95_A Adenylate kinase 1; tra 96.2 0.0033 1.1E-07 51.6 3.8 25 178-202 9-33 (196)
162 1tev_A UMP-CMP kinase; ploop, 96.2 0.0033 1.1E-07 51.5 3.8 25 178-202 3-27 (196)
163 3asz_A Uridine kinase; cytidin 96.2 0.0033 1.1E-07 52.4 3.8 26 177-202 5-30 (211)
164 1odf_A YGR205W, hypothetical 3 96.2 0.0058 2E-07 53.9 5.6 54 176-230 29-83 (290)
165 2j41_A Guanylate kinase; GMP, 96.2 0.003 1E-07 52.4 3.5 25 178-202 6-30 (207)
166 1gvn_B Zeta; postsegregational 96.2 0.0056 1.9E-07 54.0 5.5 26 177-202 32-57 (287)
167 3kl4_A SRP54, signal recogniti 96.2 0.027 9.1E-07 52.5 10.2 26 177-202 96-121 (433)
168 1ex7_A Guanylate kinase; subst 96.2 0.002 7E-08 52.9 2.4 24 179-202 2-25 (186)
169 1y63_A LMAJ004144AAA protein; 96.1 0.0034 1.2E-07 51.3 3.7 24 178-201 10-33 (184)
170 2iyv_A Shikimate kinase, SK; t 96.1 0.0027 9.1E-08 51.8 3.0 24 179-202 3-26 (184)
171 3cm0_A Adenylate kinase; ATP-b 96.1 0.0037 1.3E-07 50.9 3.9 25 178-202 4-28 (186)
172 1cke_A CK, MSSA, protein (cyti 96.1 0.0032 1.1E-07 53.1 3.6 24 179-202 6-29 (227)
173 1lvg_A Guanylate kinase, GMP k 96.1 0.0028 9.6E-08 52.6 3.1 25 178-202 4-28 (198)
174 2plr_A DTMP kinase, probable t 96.1 0.0039 1.3E-07 51.8 3.9 24 179-202 5-28 (213)
175 4a1f_A DNAB helicase, replicat 96.1 0.021 7.2E-07 51.4 8.9 90 177-271 45-167 (338)
176 2yhs_A FTSY, cell division pro 96.1 0.023 7.9E-07 53.6 9.5 26 177-202 292-317 (503)
177 3umf_A Adenylate kinase; rossm 96.1 0.0041 1.4E-07 52.4 3.9 26 177-202 28-53 (217)
178 2bwj_A Adenylate kinase 5; pho 96.1 0.0038 1.3E-07 51.4 3.7 25 178-202 12-36 (199)
179 2xxa_A Signal recognition part 96.1 0.032 1.1E-06 52.1 10.4 26 177-202 99-124 (433)
180 2if2_A Dephospho-COA kinase; a 96.1 0.0035 1.2E-07 52.0 3.5 22 179-200 2-23 (204)
181 4gp7_A Metallophosphoesterase; 96.1 0.0031 1.1E-07 50.9 3.1 23 177-199 8-30 (171)
182 2bbw_A Adenylate kinase 4, AK4 96.1 0.0038 1.3E-07 53.6 3.7 25 178-202 27-51 (246)
183 1j8m_F SRP54, signal recogniti 96.1 0.021 7.3E-07 50.5 8.7 25 178-202 98-122 (297)
184 3cmu_A Protein RECA, recombina 96.1 0.014 4.6E-07 63.9 8.5 87 176-270 1425-1515(2050)
185 1e6c_A Shikimate kinase; phosp 96.0 0.0034 1.2E-07 50.5 3.1 24 179-202 3-26 (173)
186 1ukz_A Uridylate kinase; trans 96.0 0.0042 1.4E-07 51.4 3.8 26 177-202 14-39 (203)
187 1qf9_A UMP/CMP kinase, protein 96.0 0.0045 1.5E-07 50.6 3.9 25 178-202 6-30 (194)
188 2vli_A Antibiotic resistance p 96.0 0.0029 9.8E-08 51.4 2.6 25 178-202 5-29 (183)
189 3ney_A 55 kDa erythrocyte memb 96.0 0.0042 1.5E-07 51.4 3.5 26 177-202 18-43 (197)
190 2p5t_B PEZT; postsegregational 96.0 0.0062 2.1E-07 52.6 4.7 26 177-202 31-56 (253)
191 2pt7_A CAG-ALFA; ATPase, prote 96.0 0.009 3.1E-07 53.7 6.0 107 178-300 171-277 (330)
192 1jjv_A Dephospho-COA kinase; P 96.0 0.004 1.4E-07 51.7 3.4 22 179-200 3-24 (206)
193 1znw_A Guanylate kinase, GMP k 96.0 0.0043 1.5E-07 51.7 3.5 26 177-202 19-44 (207)
194 1uf9_A TT1252 protein; P-loop, 96.0 0.005 1.7E-07 50.8 3.9 24 177-200 7-30 (203)
195 1ls1_A Signal recognition part 96.0 0.024 8.2E-07 50.1 8.5 89 178-269 98-189 (295)
196 2cdn_A Adenylate kinase; phosp 96.0 0.0045 1.5E-07 51.2 3.6 25 178-202 20-44 (201)
197 2qt1_A Nicotinamide riboside k 96.0 0.0046 1.6E-07 51.4 3.6 25 178-202 21-45 (207)
198 2pbr_A DTMP kinase, thymidylat 95.9 0.0047 1.6E-07 50.5 3.6 23 180-202 2-24 (195)
199 2pt5_A Shikimate kinase, SK; a 95.9 0.0048 1.6E-07 49.3 3.5 23 180-202 2-24 (168)
200 2wwf_A Thymidilate kinase, put 95.9 0.0051 1.7E-07 51.2 3.8 25 178-202 10-34 (212)
201 1tue_A Replication protein E1; 95.9 0.0068 2.3E-07 50.3 4.4 37 166-202 45-82 (212)
202 1htw_A HI0065; nucleotide-bind 95.9 0.0055 1.9E-07 48.8 3.8 27 176-202 31-57 (158)
203 3tlx_A Adenylate kinase 2; str 95.9 0.01 3.5E-07 50.8 5.7 26 177-202 28-53 (243)
204 3a4m_A L-seryl-tRNA(SEC) kinas 95.9 0.0051 1.7E-07 53.3 3.9 25 178-202 4-28 (260)
205 2z0h_A DTMP kinase, thymidylat 95.9 0.01 3.6E-07 48.6 5.6 23 180-202 2-24 (197)
206 1nn5_A Similar to deoxythymidy 95.9 0.0054 1.8E-07 51.1 3.8 25 178-202 9-33 (215)
207 3fb4_A Adenylate kinase; psych 95.9 0.0052 1.8E-07 51.4 3.6 23 180-202 2-24 (216)
208 1z6g_A Guanylate kinase; struc 95.9 0.0044 1.5E-07 52.2 3.1 26 177-202 22-47 (218)
209 3l0o_A Transcription terminati 95.8 0.039 1.3E-06 50.4 9.3 52 168-220 164-216 (427)
210 2jeo_A Uridine-cytidine kinase 95.8 0.0058 2E-07 52.4 3.8 26 177-202 24-49 (245)
211 1sq5_A Pantothenate kinase; P- 95.8 0.045 1.5E-06 48.6 9.7 26 177-202 79-104 (308)
212 1aky_A Adenylate kinase; ATP:A 95.8 0.0059 2E-07 51.3 3.7 25 178-202 4-28 (220)
213 1zd8_A GTP:AMP phosphotransfer 95.8 0.0055 1.9E-07 51.8 3.5 25 178-202 7-31 (227)
214 2grj_A Dephospho-COA kinase; T 95.8 0.0065 2.2E-07 50.1 3.8 26 177-202 11-36 (192)
215 3aez_A Pantothenate kinase; tr 95.8 0.0058 2E-07 54.5 3.7 27 176-202 88-114 (312)
216 1m7g_A Adenylylsulfate kinase; 95.8 0.0088 3E-07 49.9 4.6 27 176-202 23-49 (211)
217 1s96_A Guanylate kinase, GMP k 95.8 0.0059 2E-07 51.5 3.5 26 177-202 15-40 (219)
218 3dl0_A Adenylate kinase; phosp 95.8 0.0057 1.9E-07 51.2 3.4 23 180-202 2-24 (216)
219 1zu4_A FTSY; GTPase, signal re 95.8 0.017 5.7E-07 51.7 6.6 26 177-202 104-129 (320)
220 1gtv_A TMK, thymidylate kinase 95.8 0.0035 1.2E-07 52.3 2.1 23 180-202 2-24 (214)
221 4e22_A Cytidylate kinase; P-lo 95.7 0.006 2.1E-07 52.6 3.5 26 177-202 26-51 (252)
222 1zak_A Adenylate kinase; ATP:A 95.7 0.006 2.1E-07 51.4 3.4 25 178-202 5-29 (222)
223 3bgw_A DNAB-like replicative h 95.7 0.031 1.1E-06 52.4 8.6 50 177-231 196-245 (444)
224 2v54_A DTMP kinase, thymidylat 95.7 0.0061 2.1E-07 50.3 3.4 25 178-202 4-28 (204)
225 3tif_A Uncharacterized ABC tra 95.7 0.0071 2.4E-07 51.6 3.8 26 177-202 30-55 (235)
226 2j37_W Signal recognition part 95.7 0.088 3E-06 50.0 11.6 26 177-202 100-125 (504)
227 2pez_A Bifunctional 3'-phospho 95.7 0.0082 2.8E-07 48.6 3.9 25 178-202 5-29 (179)
228 2i3b_A HCR-ntpase, human cance 95.7 0.0061 2.1E-07 50.1 3.2 24 179-202 2-25 (189)
229 3k1j_A LON protease, ATP-depen 95.6 0.0093 3.2E-07 58.3 4.9 44 157-202 41-84 (604)
230 3fwy_A Light-independent proto 95.6 0.014 4.8E-07 52.1 5.6 41 176-219 46-86 (314)
231 3b5x_A Lipid A export ATP-bind 95.6 0.038 1.3E-06 53.7 9.1 26 177-202 368-393 (582)
232 2ehv_A Hypothetical protein PH 95.6 0.0067 2.3E-07 51.8 3.4 24 177-200 29-52 (251)
233 1xjc_A MOBB protein homolog; s 95.6 0.0081 2.8E-07 48.4 3.6 25 178-202 4-28 (169)
234 2pcj_A ABC transporter, lipopr 95.6 0.0083 2.8E-07 50.8 3.9 26 177-202 29-54 (224)
235 1uj2_A Uridine-cytidine kinase 95.6 0.0082 2.8E-07 51.7 3.9 26 177-202 21-46 (252)
236 2onk_A Molybdate/tungstate ABC 95.6 0.0098 3.3E-07 50.9 4.3 26 176-202 23-48 (240)
237 3sr0_A Adenylate kinase; phosp 95.6 0.0083 2.8E-07 50.1 3.6 23 180-202 2-24 (206)
238 1rj9_A FTSY, signal recognitio 95.5 0.0086 2.9E-07 53.2 3.8 26 177-202 101-126 (304)
239 3vr4_D V-type sodium ATPase su 95.5 0.023 8E-07 52.9 6.8 93 177-270 150-258 (465)
240 3gfo_A Cobalt import ATP-bindi 95.5 0.009 3.1E-07 52.2 3.8 26 177-202 33-58 (275)
241 3lnc_A Guanylate kinase, GMP k 95.5 0.0052 1.8E-07 52.1 2.2 26 177-202 26-52 (231)
242 3be4_A Adenylate kinase; malar 95.5 0.0092 3.1E-07 50.1 3.7 24 179-202 6-29 (217)
243 1e4v_A Adenylate kinase; trans 95.5 0.0093 3.2E-07 49.9 3.7 23 180-202 2-24 (214)
244 1b0u_A Histidine permease; ABC 95.5 0.0093 3.2E-07 51.8 3.8 26 177-202 31-56 (262)
245 3nwj_A ATSK2; P loop, shikimat 95.5 0.0076 2.6E-07 52.0 3.2 25 178-202 48-72 (250)
246 1q57_A DNA primase/helicase; d 95.5 0.068 2.3E-06 50.9 10.1 51 177-231 241-291 (503)
247 3ake_A Cytidylate kinase; CMP 95.4 0.0094 3.2E-07 49.3 3.6 23 180-202 4-26 (208)
248 2xb4_A Adenylate kinase; ATP-b 95.4 0.0095 3.3E-07 50.3 3.6 23 180-202 2-24 (223)
249 3b85_A Phosphate starvation-in 95.4 0.0074 2.5E-07 50.5 2.9 24 178-201 22-45 (208)
250 3cmu_A Protein RECA, recombina 95.4 0.042 1.4E-06 60.2 9.2 87 177-271 382-472 (2050)
251 3b9q_A Chloroplast SRP recepto 95.4 0.011 3.6E-07 52.6 4.0 25 178-202 100-124 (302)
252 4eaq_A DTMP kinase, thymidylat 95.4 0.022 7.4E-07 48.3 5.7 26 177-202 25-50 (229)
253 1vht_A Dephospho-COA kinase; s 95.4 0.011 3.7E-07 49.6 3.7 23 178-200 4-26 (218)
254 1ji0_A ABC transporter; ATP bi 95.4 0.011 3.7E-07 50.6 3.8 26 177-202 31-56 (240)
255 2olj_A Amino acid ABC transpor 95.3 0.011 3.7E-07 51.4 3.8 26 177-202 49-74 (263)
256 2f1r_A Molybdopterin-guanine d 95.3 0.0069 2.4E-07 49.0 2.3 24 179-202 3-26 (171)
257 3cmw_A Protein RECA, recombina 95.3 0.038 1.3E-06 59.7 8.5 88 177-272 382-473 (1706)
258 2ff7_A Alpha-hemolysin translo 95.3 0.011 3.9E-07 50.8 3.8 26 177-202 34-59 (247)
259 3r20_A Cytidylate kinase; stru 95.3 0.011 3.7E-07 50.3 3.6 25 178-202 9-33 (233)
260 1sgw_A Putative ABC transporte 95.3 0.01 3.4E-07 49.9 3.3 26 177-202 34-59 (214)
261 1ak2_A Adenylate kinase isoenz 95.3 0.011 3.9E-07 50.1 3.7 25 178-202 16-40 (233)
262 1g6h_A High-affinity branched- 95.3 0.011 3.9E-07 51.0 3.8 26 177-202 32-57 (257)
263 4g1u_C Hemin import ATP-bindin 95.3 0.011 3.7E-07 51.5 3.6 26 177-202 36-61 (266)
264 3hjn_A DTMP kinase, thymidylat 95.3 0.041 1.4E-06 45.5 6.9 86 180-269 2-90 (197)
265 3p32_A Probable GTPase RV1496/ 95.3 0.022 7.7E-07 51.7 5.8 37 166-202 65-103 (355)
266 3gqb_B V-type ATP synthase bet 95.3 0.02 6.9E-07 53.3 5.5 93 177-270 146-261 (464)
267 1oix_A RAS-related protein RAB 95.3 0.011 3.9E-07 48.3 3.5 25 178-202 29-53 (191)
268 1vpl_A ABC transporter, ATP-bi 95.3 0.012 4.2E-07 50.9 3.8 26 177-202 40-65 (256)
269 1np6_A Molybdopterin-guanine d 95.2 0.013 4.3E-07 47.5 3.6 25 178-202 6-30 (174)
270 2ixe_A Antigen peptide transpo 95.2 0.012 4.2E-07 51.3 3.8 26 177-202 44-69 (271)
271 2q6t_A DNAB replication FORK h 95.2 0.11 3.8E-06 48.6 10.6 51 177-231 199-249 (444)
272 2qe7_A ATP synthase subunit al 95.2 0.036 1.2E-06 52.1 7.1 96 170-270 153-264 (502)
273 2f6r_A COA synthase, bifunctio 95.2 0.012 4.2E-07 51.6 3.7 23 177-199 74-96 (281)
274 3end_A Light-independent proto 95.2 0.024 8.2E-07 50.2 5.6 43 176-221 39-81 (307)
275 2d2e_A SUFC protein; ABC-ATPas 95.2 0.011 3.8E-07 50.9 3.3 25 177-201 28-52 (250)
276 2v3c_C SRP54, signal recogniti 95.2 0.016 5.4E-07 54.1 4.5 25 178-202 99-123 (432)
277 2eyu_A Twitching motility prot 95.2 0.022 7.4E-07 49.4 5.1 110 175-299 22-134 (261)
278 3d3q_A TRNA delta(2)-isopenten 95.2 0.013 4.4E-07 52.7 3.7 24 179-202 8-31 (340)
279 2yz2_A Putative ABC transporte 95.1 0.014 4.7E-07 50.8 3.8 26 177-202 32-57 (266)
280 2ihy_A ABC transporter, ATP-bi 95.1 0.014 4.8E-07 51.1 3.8 26 177-202 46-71 (279)
281 2zu0_C Probable ATP-dependent 95.1 0.012 4E-07 51.3 3.2 25 177-201 45-69 (267)
282 2r9v_A ATP synthase subunit al 95.1 0.044 1.5E-06 51.6 7.3 96 170-270 166-277 (515)
283 3upu_A ATP-dependent DNA helic 95.1 0.026 8.8E-07 53.2 5.9 39 163-202 31-69 (459)
284 3iqw_A Tail-anchored protein t 95.1 0.036 1.2E-06 49.8 6.5 46 173-221 11-56 (334)
285 2og2_A Putative signal recogni 95.1 0.015 5.2E-07 52.8 4.0 26 177-202 156-181 (359)
286 3crm_A TRNA delta(2)-isopenten 95.1 0.014 4.7E-07 52.2 3.6 24 179-202 6-29 (323)
287 1mv5_A LMRA, multidrug resista 95.0 0.013 4.3E-07 50.3 3.2 26 177-202 27-52 (243)
288 3io3_A DEHA2D07832P; chaperone 95.0 0.031 1.1E-06 50.6 5.9 30 173-202 13-42 (348)
289 2f9l_A RAB11B, member RAS onco 95.0 0.013 4.4E-07 48.2 3.1 25 178-202 5-29 (199)
290 3sop_A Neuronal-specific septi 95.0 0.014 4.9E-07 50.8 3.5 23 180-202 4-26 (270)
291 1ltq_A Polynucleotide kinase; 95.0 0.014 4.9E-07 51.4 3.6 23 179-201 3-25 (301)
292 3f9v_A Minichromosome maintena 95.0 0.0072 2.5E-07 58.9 1.7 47 156-202 294-351 (595)
293 2wji_A Ferrous iron transport 95.0 0.015 5E-07 46.3 3.3 23 179-201 4-26 (165)
294 3fdi_A Uncharacterized protein 95.0 0.048 1.6E-06 45.2 6.4 24 179-202 7-30 (201)
295 2dyk_A GTP-binding protein; GT 94.9 0.016 5.6E-07 45.3 3.4 24 179-202 2-25 (161)
296 2v9p_A Replication protein E1; 94.9 0.016 5.4E-07 51.4 3.5 27 176-202 124-150 (305)
297 1zj6_A ADP-ribosylation factor 94.9 0.028 9.7E-07 45.4 4.9 34 167-201 6-39 (187)
298 2qi9_C Vitamin B12 import ATP- 94.9 0.012 4.1E-07 50.6 2.7 26 177-202 25-50 (249)
299 2ghi_A Transport protein; mult 94.9 0.013 4.6E-07 50.7 3.0 26 177-202 45-70 (260)
300 2iw3_A Elongation factor 3A; a 94.9 0.051 1.7E-06 55.6 7.5 122 177-303 460-610 (986)
301 4edh_A DTMP kinase, thymidylat 94.8 0.054 1.9E-06 45.3 6.6 25 178-202 6-30 (213)
302 4gzl_A RAS-related C3 botulinu 94.8 0.018 6.2E-07 47.6 3.5 38 165-202 17-54 (204)
303 3zvl_A Bifunctional polynucleo 94.8 0.014 4.8E-07 54.3 3.1 27 176-202 256-282 (416)
304 2nq2_C Hypothetical ABC transp 94.8 0.013 4.5E-07 50.6 2.7 125 177-302 30-193 (253)
305 2ck3_A ATP synthase subunit al 94.8 0.055 1.9E-06 51.1 7.1 100 170-270 153-272 (510)
306 1p9r_A General secretion pathw 94.8 0.057 2E-06 50.1 7.2 34 168-202 158-191 (418)
307 2zej_A Dardarin, leucine-rich 94.8 0.011 3.9E-07 47.9 2.2 22 180-201 4-25 (184)
308 3fvq_A Fe(3+) IONS import ATP- 94.8 0.023 7.9E-07 51.5 4.4 26 177-202 29-54 (359)
309 3a8t_A Adenylate isopentenyltr 94.8 0.017 5.7E-07 51.9 3.4 25 178-202 40-64 (339)
310 1a7j_A Phosphoribulokinase; tr 94.8 0.011 3.7E-07 52.2 2.1 26 177-202 4-29 (290)
311 3oaa_A ATP synthase subunit al 94.8 0.1 3.6E-06 49.0 8.8 95 171-270 154-264 (513)
312 3lv8_A DTMP kinase, thymidylat 94.8 0.048 1.7E-06 46.4 6.1 52 178-231 27-78 (236)
313 1g8f_A Sulfate adenylyltransfe 94.8 0.031 1.1E-06 53.2 5.4 45 158-202 373-419 (511)
314 1nlf_A Regulatory protein REPA 94.8 0.016 5.5E-07 50.6 3.2 26 177-202 29-54 (279)
315 3exa_A TRNA delta(2)-isopenten 94.8 0.019 6.7E-07 50.9 3.7 25 178-202 3-27 (322)
316 3mfy_A V-type ATP synthase alp 94.7 0.16 5.4E-06 48.4 10.0 57 169-230 217-275 (588)
317 2ce2_X GTPase HRAS; signaling 94.7 0.017 5.9E-07 45.2 3.1 23 180-202 5-27 (166)
318 3cr8_A Sulfate adenylyltranfer 94.7 0.03 1E-06 53.9 5.3 26 177-202 368-393 (552)
319 1yrb_A ATP(GTP)binding protein 94.7 0.022 7.6E-07 49.0 4.0 25 178-202 14-38 (262)
320 1q3t_A Cytidylate kinase; nucl 94.7 0.021 7.2E-07 48.5 3.7 26 177-202 15-40 (236)
321 1svm_A Large T antigen; AAA+ f 94.7 0.035 1.2E-06 50.8 5.4 27 176-202 167-193 (377)
322 4dzz_A Plasmid partitioning pr 94.7 0.081 2.8E-06 43.4 7.2 43 179-224 2-45 (206)
323 1fx0_A ATP synthase alpha chai 94.7 0.037 1.3E-06 52.1 5.6 88 177-269 162-264 (507)
324 2c61_A A-type ATP synthase non 94.7 0.04 1.4E-06 51.6 5.7 99 170-269 143-258 (469)
325 2wjg_A FEOB, ferrous iron tran 94.6 0.021 7.3E-07 46.1 3.5 23 179-201 8-30 (188)
326 1cp2_A CP2, nitrogenase iron p 94.6 0.048 1.6E-06 47.1 5.8 38 179-219 2-39 (269)
327 1z2a_A RAS-related protein RAB 94.6 0.02 6.9E-07 45.1 3.2 25 178-202 5-29 (168)
328 3llm_A ATP-dependent RNA helic 94.6 0.16 5.6E-06 42.8 9.1 103 167-272 67-188 (235)
329 1moz_A ARL1, ADP-ribosylation 94.6 0.022 7.5E-07 45.8 3.4 33 169-201 8-41 (183)
330 3nh6_A ATP-binding cassette SU 94.6 0.017 5.9E-07 51.2 2.9 26 177-202 79-104 (306)
331 2ocp_A DGK, deoxyguanosine kin 94.5 0.025 8.5E-07 48.2 3.8 25 178-202 2-26 (241)
332 4tmk_A Protein (thymidylate ki 94.5 0.065 2.2E-06 44.8 6.3 52 179-232 4-55 (213)
333 1tq4_A IIGP1, interferon-induc 94.5 0.033 1.1E-06 51.5 4.8 25 177-201 68-92 (413)
334 3foz_A TRNA delta(2)-isopenten 94.5 0.023 8E-07 50.3 3.6 25 178-202 10-34 (316)
335 2pjz_A Hypothetical protein ST 94.5 0.017 5.9E-07 50.1 2.7 24 178-201 30-53 (263)
336 3ld9_A DTMP kinase, thymidylat 94.5 0.046 1.6E-06 46.1 5.2 56 176-232 19-74 (223)
337 2qmh_A HPR kinase/phosphorylas 94.5 0.022 7.6E-07 47.0 3.1 25 178-202 34-58 (205)
338 2vp4_A Deoxynucleoside kinase; 94.5 0.015 5.2E-07 49.2 2.2 25 177-201 19-43 (230)
339 1fzq_A ADP-ribosylation factor 94.4 0.033 1.1E-06 44.9 4.2 26 176-201 14-39 (181)
340 1u0j_A DNA replication protein 94.4 0.043 1.5E-06 47.5 5.0 36 167-202 91-128 (267)
341 2gj8_A MNME, tRNA modification 94.4 0.022 7.6E-07 45.6 3.0 23 179-201 5-27 (172)
342 1u8z_A RAS-related protein RAL 94.4 0.022 7.5E-07 44.8 3.0 24 179-202 5-28 (168)
343 2nzj_A GTP-binding protein REM 94.4 0.02 6.8E-07 45.6 2.7 25 178-202 4-28 (175)
344 2bbs_A Cystic fibrosis transme 94.4 0.022 7.4E-07 50.2 3.1 26 177-202 63-88 (290)
345 2yyz_A Sugar ABC transporter, 94.4 0.033 1.1E-06 50.6 4.3 26 177-202 28-53 (359)
346 1r8s_A ADP-ribosylation factor 94.4 0.026 8.9E-07 44.4 3.3 22 181-202 3-24 (164)
347 2it1_A 362AA long hypothetical 94.4 0.033 1.1E-06 50.7 4.3 26 177-202 28-53 (362)
348 3con_A GTPase NRAS; structural 94.3 0.024 8.3E-07 45.9 3.2 24 179-202 22-45 (190)
349 3rlf_A Maltose/maltodextrin im 94.3 0.033 1.1E-06 50.9 4.3 26 177-202 28-53 (381)
350 3tui_C Methionine import ATP-b 94.3 0.023 7.9E-07 51.6 3.2 26 177-202 53-78 (366)
351 2ged_A SR-beta, signal recogni 94.3 0.024 8.4E-07 46.0 3.1 26 177-202 47-72 (193)
352 1kao_A RAP2A; GTP-binding prot 94.3 0.025 8.6E-07 44.4 3.1 24 179-202 4-27 (167)
353 1c1y_A RAS-related protein RAP 94.3 0.025 8.7E-07 44.5 3.2 24 179-202 4-27 (167)
354 1m7b_A RND3/RHOE small GTP-bin 94.3 0.024 8.2E-07 45.8 3.1 25 178-202 7-31 (184)
355 1v43_A Sugar-binding transport 94.3 0.034 1.2E-06 50.8 4.3 26 177-202 36-61 (372)
356 1z08_A RAS-related protein RAB 94.3 0.024 8E-07 44.9 2.9 24 179-202 7-30 (170)
357 1g29_1 MALK, maltose transport 94.3 0.034 1.2E-06 50.8 4.3 26 177-202 28-53 (372)
358 3kta_A Chromosome segregation 94.3 0.027 9.2E-07 45.5 3.3 24 179-202 27-50 (182)
359 1ek0_A Protein (GTP-binding pr 94.3 0.024 8.3E-07 44.7 3.0 23 180-202 5-27 (170)
360 2www_A Methylmalonic aciduria 94.3 0.048 1.6E-06 49.4 5.3 26 177-202 73-98 (349)
361 1z47_A CYSA, putative ABC-tran 94.3 0.024 8.3E-07 51.4 3.3 26 177-202 40-65 (355)
362 1z0j_A RAB-22, RAS-related pro 94.3 0.024 8.3E-07 44.7 3.0 24 179-202 7-30 (170)
363 1nij_A Hypothetical protein YJ 94.2 0.027 9.2E-07 50.3 3.5 25 177-201 3-27 (318)
364 3d31_A Sulfate/molybdate ABC t 94.2 0.028 9.4E-07 50.9 3.5 122 177-303 25-193 (348)
365 2erx_A GTP-binding protein DI- 94.2 0.025 8.5E-07 44.7 2.9 23 179-201 4-26 (172)
366 3vr4_A V-type sodium ATPase ca 94.2 0.23 8E-06 47.5 9.8 57 169-230 222-280 (600)
367 2afh_E Nitrogenase iron protei 94.2 0.054 1.9E-06 47.4 5.3 40 178-220 2-41 (289)
368 1tf7_A KAIC; homohexamer, hexa 94.2 0.24 8.2E-06 47.4 10.2 26 177-202 280-305 (525)
369 3q72_A GTP-binding protein RAD 94.2 0.026 8.9E-07 44.5 2.9 22 180-201 4-25 (166)
370 3q85_A GTP-binding protein REM 94.2 0.024 8.2E-07 44.8 2.8 22 179-200 3-24 (169)
371 3ihw_A Centg3; RAS, centaurin, 94.2 0.028 9.5E-07 45.6 3.1 25 178-202 20-44 (184)
372 2hxs_A RAB-26, RAS-related pro 94.2 0.028 9.7E-07 44.8 3.2 25 178-202 6-30 (178)
373 2fn4_A P23, RAS-related protei 94.2 0.027 9.2E-07 45.0 3.1 25 178-202 9-33 (181)
374 2r8r_A Sensor protein; KDPD, P 94.2 0.053 1.8E-06 45.7 4.8 24 179-202 7-30 (228)
375 1g16_A RAS-related protein SEC 94.2 0.03 1E-06 44.2 3.3 24 179-202 4-27 (170)
376 1wms_A RAB-9, RAB9, RAS-relate 94.2 0.026 9E-07 45.0 3.0 25 178-202 7-31 (177)
377 1ky3_A GTP-binding protein YPT 94.1 0.027 9.1E-07 45.1 3.0 26 177-202 7-32 (182)
378 2lkc_A Translation initiation 94.1 0.03 1E-06 44.7 3.2 26 177-202 7-32 (178)
379 3eph_A TRNA isopentenyltransfe 94.1 0.037 1.2E-06 50.9 4.0 24 179-202 3-26 (409)
380 1lw7_A Transcriptional regulat 94.1 0.03 1E-06 51.0 3.5 25 178-202 170-194 (365)
381 3gmt_A Adenylate kinase; ssgci 94.1 0.032 1.1E-06 47.2 3.4 25 178-202 8-32 (230)
382 3c5c_A RAS-like protein 12; GD 94.1 0.028 9.6E-07 45.6 3.0 25 178-202 21-45 (187)
383 1m2o_B GTP-binding protein SAR 94.1 0.031 1.1E-06 45.5 3.3 24 178-201 23-46 (190)
384 3kjh_A CO dehydrogenase/acetyl 94.0 0.066 2.3E-06 45.4 5.5 39 181-222 3-41 (254)
385 1r2q_A RAS-related protein RAB 94.0 0.031 1.1E-06 44.0 3.2 24 179-202 7-30 (170)
386 1svi_A GTP-binding protein YSX 94.0 0.03 1E-06 45.5 3.1 25 177-201 22-46 (195)
387 2qm8_A GTPase/ATPase; G protei 94.0 0.039 1.3E-06 49.7 4.1 27 176-202 53-79 (337)
388 2cjw_A GTP-binding protein GEM 94.0 0.032 1.1E-06 45.6 3.3 24 178-201 6-29 (192)
389 3cmw_A Protein RECA, recombina 94.0 0.1 3.5E-06 56.4 7.8 87 177-271 1430-1520(1706)
390 2ewv_A Twitching motility prot 94.0 0.05 1.7E-06 49.7 4.8 111 176-299 134-245 (372)
391 1nrj_B SR-beta, signal recogni 94.0 0.033 1.1E-06 46.3 3.4 26 177-202 11-36 (218)
392 1f6b_A SAR1; gtpases, N-termin 94.0 0.047 1.6E-06 44.8 4.2 24 177-200 24-47 (198)
393 2bme_A RAB4A, RAS-related prot 94.0 0.031 1.1E-06 45.0 3.1 25 178-202 10-34 (186)
394 3t1o_A Gliding protein MGLA; G 94.0 0.032 1.1E-06 45.3 3.1 25 178-202 14-38 (198)
395 2cxx_A Probable GTP-binding pr 93.9 0.029 9.9E-07 45.3 2.8 23 180-202 3-25 (190)
396 1upt_A ARL1, ADP-ribosylation 93.9 0.034 1.2E-06 44.0 3.2 25 178-202 7-31 (171)
397 1oxx_K GLCV, glucose, ABC tran 93.9 0.028 9.6E-07 50.9 2.9 26 177-202 30-55 (353)
398 1z0f_A RAB14, member RAS oncog 93.9 0.034 1.1E-06 44.3 3.2 25 178-202 15-39 (179)
399 2y8e_A RAB-protein 6, GH09086P 93.9 0.033 1.1E-06 44.4 3.1 24 179-202 15-38 (179)
400 3thx_A DNA mismatch repair pro 93.9 0.032 1.1E-06 57.1 3.6 22 177-198 661-682 (934)
401 2h92_A Cytidylate kinase; ross 93.9 0.032 1.1E-06 46.6 3.1 24 179-202 4-27 (219)
402 4dsu_A GTPase KRAS, isoform 2B 93.9 0.031 1.1E-06 45.0 3.0 24 179-202 5-28 (189)
403 3kkq_A RAS-related protein M-R 93.9 0.031 1.1E-06 44.9 3.0 25 178-202 18-42 (183)
404 2iwr_A Centaurin gamma 1; ANK 93.9 0.026 8.8E-07 45.2 2.4 24 179-202 8-31 (178)
405 3pqc_A Probable GTP-binding pr 93.9 0.034 1.2E-06 45.1 3.2 25 178-202 23-47 (195)
406 3v9p_A DTMP kinase, thymidylat 93.9 0.055 1.9E-06 45.7 4.5 25 178-202 25-49 (227)
407 3dz8_A RAS-related protein RAB 93.9 0.037 1.3E-06 45.0 3.4 25 178-202 23-47 (191)
408 3t5g_A GTP-binding protein RHE 93.8 0.034 1.2E-06 44.5 3.1 25 178-202 6-30 (181)
409 3bc1_A RAS-related protein RAB 93.8 0.035 1.2E-06 44.8 3.2 25 178-202 11-35 (195)
410 1mh1_A RAC1; GTP-binding, GTPa 93.8 0.034 1.2E-06 44.7 3.0 24 179-202 6-29 (186)
411 2zts_A Putative uncharacterize 93.8 0.076 2.6E-06 45.0 5.4 51 177-231 29-79 (251)
412 2oil_A CATX-8, RAS-related pro 93.8 0.036 1.2E-06 45.0 3.1 25 178-202 25-49 (193)
413 2a9k_A RAS-related protein RAL 93.8 0.035 1.2E-06 44.6 3.0 25 178-202 18-42 (187)
414 4akg_A Glutathione S-transfera 93.8 0.25 8.4E-06 56.0 10.4 85 169-271 1259-1347(2695)
415 3bwd_D RAC-like GTP-binding pr 93.7 0.035 1.2E-06 44.4 3.0 24 178-201 8-31 (182)
416 2orv_A Thymidine kinase; TP4A 93.7 0.094 3.2E-06 44.3 5.6 106 178-297 19-125 (234)
417 2efe_B Small GTP-binding prote 93.7 0.035 1.2E-06 44.4 2.9 24 179-202 13-36 (181)
418 1ypw_A Transitional endoplasmi 93.7 0.025 8.7E-07 57.1 2.5 46 157-202 477-535 (806)
419 3gd7_A Fusion complex of cysti 93.7 0.037 1.3E-06 50.8 3.4 26 177-202 46-71 (390)
420 1p5z_B DCK, deoxycytidine kina 93.7 0.021 7.3E-07 49.3 1.7 26 177-202 23-48 (263)
421 2obl_A ESCN; ATPase, hydrolase 93.7 0.041 1.4E-06 49.7 3.6 27 176-202 69-95 (347)
422 2qnr_A Septin-2, protein NEDD5 93.7 0.032 1.1E-06 49.4 2.8 22 180-201 20-41 (301)
423 1gwn_A RHO-related GTP-binding 93.7 0.037 1.3E-06 45.8 3.1 25 178-202 28-52 (205)
424 2bov_A RAla, RAS-related prote 93.7 0.036 1.2E-06 45.4 3.0 25 178-202 14-38 (206)
425 1pui_A ENGB, probable GTP-bind 93.7 0.025 8.5E-07 46.7 2.0 26 176-201 24-49 (210)
426 2woj_A ATPase GET3; tail-ancho 93.6 0.13 4.3E-06 46.7 6.8 27 176-202 16-42 (354)
427 2fg5_A RAB-22B, RAS-related pr 93.6 0.038 1.3E-06 45.0 3.0 25 178-202 23-47 (192)
428 3cbq_A GTP-binding protein REM 93.6 0.029 1E-06 46.0 2.3 24 177-200 22-45 (195)
429 2axn_A 6-phosphofructo-2-kinas 93.6 0.047 1.6E-06 52.3 4.0 26 177-202 34-59 (520)
430 2gza_A Type IV secretion syste 93.6 0.056 1.9E-06 49.1 4.4 26 177-202 174-199 (361)
431 2g6b_A RAS-related protein RAB 93.6 0.041 1.4E-06 44.0 3.2 25 178-202 10-34 (180)
432 3oes_A GTPase rhebl1; small GT 93.6 0.041 1.4E-06 45.1 3.3 26 177-202 23-48 (201)
433 2ew1_A RAS-related protein RAB 93.6 0.042 1.4E-06 45.4 3.3 25 178-202 26-50 (201)
434 1vg8_A RAS-related protein RAB 93.6 0.037 1.3E-06 45.4 3.0 26 177-202 7-32 (207)
435 2atv_A RERG, RAS-like estrogen 93.6 0.047 1.6E-06 44.5 3.5 26 177-202 27-52 (196)
436 3tw8_B RAS-related protein RAB 93.6 0.037 1.3E-06 44.1 2.8 25 177-201 8-32 (181)
437 3clv_A RAB5 protein, putative; 93.6 0.041 1.4E-06 44.8 3.1 25 178-202 7-31 (208)
438 2fz4_A DNA repair protein RAD2 93.5 0.26 8.7E-06 41.8 8.2 38 162-202 95-132 (237)
439 1ksh_A ARF-like protein 2; sma 93.5 0.041 1.4E-06 44.3 3.0 27 176-202 16-42 (186)
440 2gf9_A RAS-related protein RAB 93.5 0.041 1.4E-06 44.6 3.0 25 178-202 22-46 (189)
441 2fh5_B SR-beta, signal recogni 93.5 0.04 1.4E-06 45.6 3.0 25 178-202 7-31 (214)
442 1zd9_A ADP-ribosylation factor 93.5 0.044 1.5E-06 44.4 3.2 25 178-202 22-46 (188)
443 3reg_A RHO-like small GTPase; 93.5 0.041 1.4E-06 44.8 3.0 25 178-202 23-47 (194)
444 2gf0_A GTP-binding protein DI- 93.5 0.045 1.5E-06 44.5 3.2 25 178-202 8-32 (199)
445 2yv5_A YJEQ protein; hydrolase 93.5 0.06 2E-06 47.7 4.2 33 166-202 156-188 (302)
446 2b6h_A ADP-ribosylation factor 93.5 0.038 1.3E-06 45.1 2.7 26 176-201 27-52 (192)
447 3tkl_A RAS-related protein RAB 93.5 0.042 1.4E-06 44.6 3.0 25 178-202 16-40 (196)
448 1ega_A Protein (GTP-binding pr 93.4 0.046 1.6E-06 48.4 3.4 25 178-202 8-32 (301)
449 2gks_A Bifunctional SAT/APS ki 93.4 0.1 3.6E-06 50.1 6.1 44 159-202 351-396 (546)
450 3llu_A RAS-related GTP-binding 93.4 0.041 1.4E-06 44.9 2.9 24 178-201 20-43 (196)
451 4dkx_A RAS-related protein RAB 93.4 0.043 1.5E-06 46.0 3.0 22 180-201 15-36 (216)
452 1zbd_A Rabphilin-3A; G protein 93.4 0.043 1.5E-06 45.0 2.9 25 178-202 8-32 (203)
453 2a5j_A RAS-related protein RAB 93.4 0.046 1.6E-06 44.4 3.1 25 178-202 21-45 (191)
454 2o52_A RAS-related protein RAB 93.4 0.042 1.4E-06 45.1 2.9 25 178-202 25-49 (200)
455 2p67_A LAO/AO transport system 93.4 0.059 2E-06 48.6 4.0 27 176-202 54-80 (341)
456 1z06_A RAS-related protein RAB 93.4 0.047 1.6E-06 44.2 3.1 25 178-202 20-44 (189)
457 3q3j_B RHO-related GTP-binding 93.3 0.056 1.9E-06 45.0 3.6 25 178-202 27-51 (214)
458 2woo_A ATPase GET3; tail-ancho 93.3 0.12 4.3E-06 46.2 6.1 27 176-202 17-43 (329)
459 1x3s_A RAS-related protein RAB 93.3 0.045 1.6E-06 44.3 3.0 25 178-202 15-39 (195)
460 2p5s_A RAS and EF-hand domain 93.3 0.044 1.5E-06 44.9 2.9 26 177-202 27-52 (199)
461 4hlc_A DTMP kinase, thymidylat 93.3 0.11 3.7E-06 43.1 5.3 50 179-232 3-52 (205)
462 2q3h_A RAS homolog gene family 93.3 0.042 1.4E-06 44.9 2.8 25 178-202 20-44 (201)
463 4b3f_X DNA-binding protein smu 93.3 0.083 2.8E-06 52.0 5.3 62 165-232 194-255 (646)
464 2npi_A Protein CLP1; CLP1-PCF1 93.3 0.045 1.5E-06 51.5 3.2 26 177-202 137-162 (460)
465 2h17_A ADP-ribosylation factor 93.3 0.042 1.4E-06 44.2 2.7 25 178-202 21-45 (181)
466 2bcg_Y Protein YP2, GTP-bindin 93.3 0.051 1.7E-06 44.7 3.3 25 178-202 8-32 (206)
467 2g3y_A GTP-binding protein GEM 93.3 0.047 1.6E-06 45.6 3.0 23 178-200 37-59 (211)
468 3k53_A Ferrous iron transport 93.2 0.055 1.9E-06 46.9 3.6 25 178-202 3-27 (271)
469 3tqf_A HPR(Ser) kinase; transf 93.2 0.055 1.9E-06 43.5 3.2 24 178-201 16-39 (181)
470 1bif_A 6-phosphofructo-2-kinas 93.2 0.051 1.8E-06 51.3 3.6 26 177-202 38-63 (469)
471 2qag_B Septin-6, protein NEDD5 93.2 0.043 1.5E-06 50.9 2.9 21 181-201 45-65 (427)
472 3tmk_A Thymidylate kinase; pho 93.2 0.17 6E-06 42.3 6.4 25 178-202 5-29 (216)
473 2atx_A Small GTP binding prote 93.1 0.051 1.7E-06 44.1 3.1 25 178-202 18-42 (194)
474 2j1l_A RHO-related GTP-binding 93.1 0.047 1.6E-06 45.4 2.8 24 178-201 34-57 (214)
475 2rcn_A Probable GTPase ENGC; Y 93.1 0.051 1.7E-06 49.2 3.2 25 178-202 215-239 (358)
476 3lxx_A GTPase IMAP family memb 93.1 0.048 1.6E-06 46.3 2.9 26 177-202 28-53 (239)
477 2j0v_A RAC-like GTP-binding pr 93.1 0.052 1.8E-06 44.9 3.1 25 178-202 9-33 (212)
478 2fv8_A H6, RHO-related GTP-bin 93.1 0.055 1.9E-06 44.6 3.2 25 178-202 25-49 (207)
479 2hup_A RAS-related protein RAB 93.1 0.053 1.8E-06 44.5 3.1 25 178-202 29-53 (201)
480 2gco_A H9, RHO-related GTP-bin 93.0 0.06 2.1E-06 44.1 3.3 25 178-202 25-49 (201)
481 1m8p_A Sulfate adenylyltransfe 93.0 0.092 3.2E-06 50.8 5.0 26 177-202 395-420 (573)
482 4bas_A ADP-ribosylation factor 92.9 0.064 2.2E-06 43.6 3.4 26 177-202 16-41 (199)
483 2qu8_A Putative nucleolar GTP- 92.9 0.057 1.9E-06 45.3 3.1 25 178-202 29-53 (228)
484 3cph_A RAS-related protein SEC 92.9 0.059 2E-06 44.4 3.2 25 178-202 20-44 (213)
485 3ea0_A ATPase, para family; al 92.9 0.15 5.3E-06 43.0 5.9 41 177-219 3-44 (245)
486 2fu5_C RAS-related protein RAB 92.9 0.033 1.1E-06 44.8 1.5 24 178-201 8-31 (183)
487 3cwq_A Para family chromosome 92.9 0.15 5.2E-06 42.2 5.7 43 180-226 2-45 (209)
488 1f2t_A RAD50 ABC-ATPase; DNA d 92.9 0.072 2.5E-06 41.7 3.4 24 178-201 23-46 (149)
489 3zq6_A Putative arsenical pump 92.8 0.15 5E-06 45.6 5.8 25 178-202 14-38 (324)
490 3iev_A GTP-binding protein ERA 92.8 0.057 1.9E-06 47.9 3.1 26 177-202 9-34 (308)
491 2dpy_A FLII, flagellum-specifi 92.7 0.065 2.2E-06 50.1 3.4 27 176-202 155-181 (438)
492 2h57_A ADP-ribosylation factor 92.7 0.04 1.4E-06 44.7 1.7 25 178-202 21-45 (190)
493 2il1_A RAB12; G-protein, GDP, 92.6 0.062 2.1E-06 43.7 2.9 25 178-202 26-50 (192)
494 1u0l_A Probable GTPase ENGC; p 92.6 0.077 2.6E-06 46.9 3.6 34 166-202 160-193 (301)
495 1x6v_B Bifunctional 3'-phospho 92.6 0.08 2.7E-06 51.6 4.0 26 177-202 51-76 (630)
496 3def_A T7I23.11 protein; chlor 92.5 0.14 4.9E-06 44.1 5.1 26 177-202 35-60 (262)
497 1mky_A Probable GTP-binding pr 92.5 0.12 4.2E-06 48.2 5.0 43 160-202 151-204 (439)
498 1yqt_A RNAse L inhibitor; ATP- 92.5 0.066 2.3E-06 51.4 3.2 20 180-199 49-68 (538)
499 3b60_A Lipid A export ATP-bind 92.5 0.095 3.2E-06 50.9 4.4 26 177-202 368-393 (582)
500 3euj_A Chromosome partition pr 92.5 0.068 2.3E-06 50.4 3.2 24 179-202 30-53 (483)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=5.5e-33 Score=271.25 Aligned_cols=184 Identities=18% Similarity=0.170 Sum_probs=153.1
Q ss_pred CcccchhhhHHHHHHHhhcc---CceEEEEEeCCCCchHHHHHHHHH--hhhccCCCCCEEEEEEecCCC--ChHHHHHH
Q 038882 157 PRIIGQESIFDDVWRCIIEE---QVGIIGLYGAGGVGKTTLLKQLNN--KLCHERHDFDIVIWVVVSKDL--NLEKVQED 229 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~---~~~vi~I~G~~GiGKTtLa~~v~~--~~~~~~~~f~~~~wv~vs~~~--~~~~~~~~ 229 (347)
+..+||+.++++|.++|..+ ..++|+|+||||+||||||+.+|+ +. ++..+|++++||++++.+ ++..++..
T Consensus 128 ~~~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 128 MTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTD 206 (549)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHH
T ss_pred CccCCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHH
Confidence 33359999999999999765 679999999999999999999998 44 678999999999999885 79999999
Q ss_pred HHHhcCCCCc-----cccccChHHHHHHHHHHhcCC-cEEEEEeCCCCcccccccccCCCCCCCCcEEEEecCChhHHhh
Q 038882 230 IGKKIDLFSE-----SWKNKSLVEKSCAIFKILSNK-KFVLLLDDVWEPVDLTKVGVPIPNSTNASKVLFTTRYKEVCGK 303 (347)
Q Consensus 230 i~~~l~~~~~-----~~~~~~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~ 303 (347)
|+.+++.... .....+...+...+++.|+++ ||||||||||+..++ .+. ..+||+||||||+..++..
T Consensus 207 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~ 280 (549)
T 2a5y_B 207 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNA 280 (549)
T ss_dssp HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGG
T ss_pred HHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHHH
Confidence 9999976421 112334566789999999996 999999999997654 221 1279999999999999887
Q ss_pred cCC-CceeecCCCCHHHHHHHHhhhhCh--------hhHHHHHHHhCCcccCC
Q 038882 304 MEA-HKKLRVECLTADEAWMLFNVKVGE--------DTIDKIFVKCCCHTFVI 347 (347)
Q Consensus 304 ~~~-~~~~~l~~L~~~ea~~Lf~~~~~~--------~~~~~I~~~~~G~PLAi 347 (347)
++. ...|+|++|+.++||+||.+.++. +.+.+|+++|+|+||||
T Consensus 281 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl 333 (549)
T 2a5y_B 281 ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATL 333 (549)
T ss_dssp CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHH
Confidence 763 357999999999999999998752 36889999999999985
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.95 E-value=8.9e-28 Score=254.97 Aligned_cols=185 Identities=21% Similarity=0.313 Sum_probs=148.2
Q ss_pred CCcccchhhhHHHHHHHhhc--cCceEEEEEeCCCCchHHHHHHHHHhhhccCC-CCCEEEEEEecCCCC--hHHHHHHH
Q 038882 156 EPRIIGQESIFDDVWRCIIE--EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERH-DFDIVIWVVVSKDLN--LEKVQEDI 230 (347)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-~f~~~~wv~vs~~~~--~~~~~~~i 230 (347)
++.|+||++++++|.++|.. ++.++|+|+||||+||||||+++|++...... .++.++|+++++..+ ....+..+
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 202 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNL 202 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHH
T ss_pred CceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHH
Confidence 46799999999999999963 56899999999999999999999987522244 446888999988543 44446667
Q ss_pred HHhcCCCCc--cccccChHHHHHHHHHHhcCC--cEEEEEeCCCCcccccccccCCCCCCCCcEEEEecCChhHHhh-cC
Q 038882 231 GKKIDLFSE--SWKNKSLVEKSCAIFKILSNK--KFVLLLDDVWEPVDLTKVGVPIPNSTNASKVLFTTRYKEVCGK-ME 305 (347)
Q Consensus 231 ~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~-~~ 305 (347)
+..+..... .....+..++...++..+.++ ||||||||+|+...|..+ .+||+||||||++.++.. ++
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~ 275 (1249)
T 3sfz_A 203 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMG 275 (1249)
T ss_dssp HHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCS
T ss_pred HHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhcC
Confidence 777654321 123456778888999999877 999999999998777654 468999999999998854 44
Q ss_pred CCceeecCC-CCHHHHHHHHhhhhC------hhhHHHHHHHhCCcccCC
Q 038882 306 AHKKLRVEC-LTADEAWMLFNVKVG------EDTIDKIFVKCCCHTFVI 347 (347)
Q Consensus 306 ~~~~~~l~~-L~~~ea~~Lf~~~~~------~~~~~~I~~~~~G~PLAi 347 (347)
....+.+++ |+.++|++||...++ ++.+.+|+++|+|+||||
T Consensus 276 ~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal 324 (1249)
T 3sfz_A 276 PKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVV 324 (1249)
T ss_dssp CBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHH
T ss_pred CceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHH
Confidence 556889996 999999999998764 457899999999999986
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.95 E-value=2.6e-28 Score=244.96 Aligned_cols=183 Identities=16% Similarity=0.164 Sum_probs=140.8
Q ss_pred CcccchhhhHHHHHHHhhc-cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCE-EEEEEecCCCChHHHHHHHHHhc
Q 038882 157 PRIIGQESIFDDVWRCIIE-EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDI-VIWVVVSKDLNLEKVQEDIGKKI 234 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~-~~wv~vs~~~~~~~~~~~i~~~l 234 (347)
+..+||+.+++.|.++|.. +..++|+|+||||+||||||+.++++. ++..+|+. ++|+++++.++...++..|+..+
T Consensus 128 k~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4459999999999999986 567999999999999999999999876 56778986 99999999999888888887754
Q ss_pred CCCC----ccc-----cccChHHHHHHHHHHh---cCCcEEEEEeCCCCcccccccccCCCCCCCCcEEEEecCChhHHh
Q 038882 235 DLFS----ESW-----KNKSLVEKSCAIFKIL---SNKKFVLLLDDVWEPVDLTKVGVPIPNSTNASKVLFTTRYKEVCG 302 (347)
Q Consensus 235 ~~~~----~~~-----~~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~ 302 (347)
+... ... ...+.+++...+++.| .++|+||||||+|+...|+.+. +||+||||||+..++.
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~ 279 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTD 279 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHH
T ss_pred hhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHH
Confidence 3210 000 0112345566777766 6899999999999988787641 6899999999999886
Q ss_pred hcCCCceeecC------CCCHHHHHHHHhhhhChhhHHHHHHHhCCcccCC
Q 038882 303 KMEAHKKLRVE------CLTADEAWMLFNVKVGEDTIDKIFVKCCCHTFVI 347 (347)
Q Consensus 303 ~~~~~~~~~l~------~L~~~ea~~Lf~~~~~~~~~~~I~~~~~G~PLAi 347 (347)
.+.....+.++ +|+.+|||+||.+.++........+.|+|+||||
T Consensus 280 ~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~eICgGLPLAL 330 (1221)
T 1vt4_I 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330 (1221)
T ss_dssp HHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHHHHHCCCCHHHH
T ss_pred hcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCCHHHHHHHHhCCCHHHH
Confidence 44333356666 9999999999999875432222234499999986
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.93 E-value=9.2e-26 Score=222.39 Aligned_cols=182 Identities=19% Similarity=0.289 Sum_probs=139.5
Q ss_pred CCcccchhhhHHHHHHHhhc--cCceEEEEEeCCCCchHHHHHHHHHhhhcc-CCCC-CEEEEEEecCCCChHHHHHHH-
Q 038882 156 EPRIIGQESIFDDVWRCIIE--EQVGIIGLYGAGGVGKTTLLKQLNNKLCHE-RHDF-DIVIWVVVSKDLNLEKVQEDI- 230 (347)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~~f-~~~~wv~vs~~~~~~~~~~~i- 230 (347)
++.||||+.+++.|.++|.. ++.++|+|+||||+||||||+.++++. .. ..+| +.++|++++.. +...++..+
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 36799999999999999974 467899999999999999999999875 44 5678 58999999875 333444443
Q ss_pred --HHhcCCC--CccccccChHHHHHHHHHHhcC--CcEEEEEeCCCCcccccccccCCCCCCCCcEEEEecCChhHHhhc
Q 038882 231 --GKKIDLF--SESWKNKSLVEKSCAIFKILSN--KKFVLLLDDVWEPVDLTKVGVPIPNSTNASKVLFTTRYKEVCGKM 304 (347)
Q Consensus 231 --~~~l~~~--~~~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~~ 304 (347)
+..++.. .......+.......+...+.+ +++||||||+|+...+..+ +.|++||+|||+..++..+
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~ 273 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSV 273 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTC
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhc
Confidence 3444421 1112344566778888888876 7899999999987655432 4689999999999887654
Q ss_pred CCCceeec---CCCCHHHHHHHHhhhhC------hhhHHHHHHHhCCcccCC
Q 038882 305 EAHKKLRV---ECLTADEAWMLFNVKVG------EDTIDKIFVKCCCHTFVI 347 (347)
Q Consensus 305 ~~~~~~~l---~~L~~~ea~~Lf~~~~~------~~~~~~I~~~~~G~PLAi 347 (347)
. ...+.+ ++|+.+++++||...++ .+.+.+|+++|+|+||||
T Consensus 274 ~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 324 (591)
T 1z6t_A 274 M-GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVV 324 (591)
T ss_dssp C-SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHH
T ss_pred C-CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHH
Confidence 4 234444 58999999999998875 356899999999999985
No 5
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.69 E-value=9.9e-17 Score=122.62 Aligned_cols=83 Identities=7% Similarity=0.097 Sum_probs=74.1
Q ss_pred cchhHHHhhHHHHhhhhhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhchHHHHHHHHHHHHHHHHHHH
Q 038882 11 FSCDAIFSHCLNCTERQVAFISELEDNLDSLQAEMQKLIEVRDDVMTRVIIAEQQQ-MKRLNQVQGWLKRVEAVEAEVRE 89 (347)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~-~~~~~~~~~Wl~~l~~~~~d~ed 89 (347)
|+|+.+++||.+++.+++.++.+++++++.|+++|++|+++|.+ |+.+. ...++.++.|+.+||+++||+||
T Consensus 1 a~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~d-------a~~~~~~~~d~~vk~W~~~vrdlaYD~ED 73 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIK-------IGEVPREQLDSQDKLWADEVRELSYVIED 73 (115)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHHhccccCCHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999999999999999999999999999999 55442 23468999999999999999999
Q ss_pred HHHHHHHHhhh
Q 038882 90 LQRIQTQAINN 100 (347)
Q Consensus 90 ~ld~~~~~~~~ 100 (347)
+||+|.++...
T Consensus 74 ~iD~f~~~~~~ 84 (115)
T 3qfl_A 74 VVDKFLVQVDG 84 (115)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 99999998753
No 6
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.67 E-value=1.4e-16 Score=146.03 Aligned_cols=181 Identities=15% Similarity=0.090 Sum_probs=123.9
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCC------ChHHHHHHH
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDL------NLEKVQEDI 230 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~------~~~~~~~~i 230 (347)
+.|+||+.+++.|.+++..+ +++.|+|++|+|||||++.+++.. . .+|+++.... +...++..+
T Consensus 12 ~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~l 81 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREELIKEL 81 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHHHHHH
Confidence 67999999999999998764 799999999999999999998764 1 6777765432 566677777
Q ss_pred HHhcCCC----------------CccccccChHHHHHHHHHHhcC-CcEEEEEeCCCCccc--------ccccccCCCCC
Q 038882 231 GKKIDLF----------------SESWKNKSLVEKSCAIFKILSN-KKFVLLLDDVWEPVD--------LTKVGVPIPNS 285 (347)
Q Consensus 231 ~~~l~~~----------------~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~--------~~~l~~~l~~~ 285 (347)
...+... .......+..++...+.+..+. ++++|||||++.... +..+...+.+.
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~ 161 (350)
T 2qen_A 82 QSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS 161 (350)
T ss_dssp HHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh
Confidence 6655420 0001123445555666665543 499999999976432 11111111111
Q ss_pred CCCcEEEEecCChhHHhh----------c-CC-CceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcccC
Q 038882 286 TNASKVLFTTRYKEVCGK----------M-EA-HKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHTFV 346 (347)
Q Consensus 286 ~~gs~iiiTtR~~~v~~~----------~-~~-~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~PLA 346 (347)
..+.++|+|++....... + +. ...+.+.+|+.+++.+++.+.+ .++.+..|+..|+|+|++
T Consensus 162 ~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~~ 241 (350)
T 2qen_A 162 LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPGW 241 (350)
T ss_dssp CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHHH
T ss_pred cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHH
Confidence 247889999887653211 1 11 2378999999999999998743 356788999999999986
Q ss_pred C
Q 038882 347 I 347 (347)
Q Consensus 347 i 347 (347)
+
T Consensus 242 l 242 (350)
T 2qen_A 242 L 242 (350)
T ss_dssp H
T ss_pred H
Confidence 3
No 7
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.63 E-value=1.5e-15 Score=139.48 Aligned_cols=180 Identities=12% Similarity=0.120 Sum_probs=116.0
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCC-----CChHHHHHHHH
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKD-----LNLEKVQEDIG 231 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-----~~~~~~~~~i~ 231 (347)
+.|+||+++++.|.+ +.. +++.|+|++|+|||+|++.+++.. .. ..+|+++... .+...++..+.
T Consensus 13 ~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL---NL---PYIYLDLRKFEERNYISYKDFLLELQ 82 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH---TC---CEEEEEGGGGTTCSCCCHHHHHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc---CC---CEEEEEchhhccccCCCHHHHHHHHH
Confidence 678999999999999 765 699999999999999999999876 22 2578887643 34455555544
Q ss_pred HhcC--------------C------CCc--cc-----cccChHHHHHHHHHHhcCCcEEEEEeCCCCcc-----cccccc
Q 038882 232 KKID--------------L------FSE--SW-----KNKSLVEKSCAIFKILSNKKFVLLLDDVWEPV-----DLTKVG 279 (347)
Q Consensus 232 ~~l~--------------~------~~~--~~-----~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----~~~~l~ 279 (347)
..+. . +.. .. .......+...+.+..+ ++++|||||++... ++..+.
T Consensus 83 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l 161 (357)
T 2fna_A 83 KEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPAL 161 (357)
T ss_dssp HHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHH
T ss_pred HHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHH
Confidence 4321 0 000 00 01233334444443322 49999999996532 222222
Q ss_pred cCCCCCCCCcEEEEecCChhHHhh----------cC-C-CceeecCCCCHHHHHHHHhhhhC-----hhhHHHHHHHhCC
Q 038882 280 VPIPNSTNASKVLFTTRYKEVCGK----------ME-A-HKKLRVECLTADEAWMLFNVKVG-----EDTIDKIFVKCCC 342 (347)
Q Consensus 280 ~~l~~~~~gs~iiiTtR~~~v~~~----------~~-~-~~~~~l~~L~~~ea~~Lf~~~~~-----~~~~~~I~~~~~G 342 (347)
..+.+...+.++|+|++....... +. . ...+.+.+|+.+++.+++...+. .+....|+..|+|
T Consensus 162 ~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~i~~~t~G 241 (357)
T 2fna_A 162 AYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDYEVVYEKIGG 241 (357)
T ss_dssp HHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCHHHHHHHHCS
T ss_pred HHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcHHHHHHHhCC
Confidence 222122246789999998653221 11 1 24789999999999999987542 2234899999999
Q ss_pred cccCC
Q 038882 343 HTFVI 347 (347)
Q Consensus 343 ~PLAi 347 (347)
+|+++
T Consensus 242 ~P~~l 246 (357)
T 2fna_A 242 IPGWL 246 (357)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 99863
No 8
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.63 E-value=1.6e-15 Score=142.43 Aligned_cols=187 Identities=16% Similarity=0.123 Sum_probs=129.1
Q ss_pred CcccchhhhHHHHHHHh-hc------cCceEEEE--EeCCCCchHHHHHHHHHhhhccC---CCCC-EEEEEEecCCCCh
Q 038882 157 PRIIGQESIFDDVWRCI-IE------EQVGIIGL--YGAGGVGKTTLLKQLNNKLCHER---HDFD-IVIWVVVSKDLNL 223 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L-~~------~~~~vi~I--~G~~GiGKTtLa~~v~~~~~~~~---~~f~-~~~wv~vs~~~~~ 223 (347)
..|+||+++++.|.+++ .. .....+.| +|++|+|||+|++.+++.. ... ..+. .++|+++....+.
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV-SEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHH-HHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHH-HHHHhccCCceeEEEEECCCCCCH
Confidence 67999999999999988 42 24567777 9999999999999999876 221 1223 4578887777788
Q ss_pred HHHHHHHHHhcCCCCccccccChHHHHHHHHHHhc--CCcEEEEEeCCCCcc--------cccccccCC---CCCC--CC
Q 038882 224 EKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILS--NKKFVLLLDDVWEPV--------DLTKVGVPI---PNST--NA 288 (347)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~--------~~~~l~~~l---~~~~--~g 288 (347)
..++..++.+++.... ....+.......+.+.+. +++++|||||++... .+..+...+ +..+ .+
T Consensus 101 ~~~~~~l~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQ-VRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHTCCCC-CTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHhCCCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 9999999998875321 112344566667777765 689999999997632 122221111 1112 34
Q ss_pred cEEEEecCChhHHhhc--------CC-CceeecCCCCHHHHHHHHhhhh---------ChhhHHHHHHHhC------Ccc
Q 038882 289 SKVLFTTRYKEVCGKM--------EA-HKKLRVECLTADEAWMLFNVKV---------GEDTIDKIFVKCC------CHT 344 (347)
Q Consensus 289 s~iiiTtR~~~v~~~~--------~~-~~~~~l~~L~~~ea~~Lf~~~~---------~~~~~~~I~~~~~------G~P 344 (347)
..+|+||+...+...+ .. ...+.+++|+.++++++|...+ .++.+..|++.|+ |+|
T Consensus 180 v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p 259 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSA 259 (412)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCH
T ss_pred EEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcH
Confidence 5588888765432111 11 1238999999999999997653 2567889999999 999
Q ss_pred c
Q 038882 345 F 345 (347)
Q Consensus 345 L 345 (347)
.
T Consensus 260 ~ 260 (412)
T 1w5s_A 260 R 260 (412)
T ss_dssp H
T ss_pred H
Confidence 5
No 9
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.53 E-value=5.5e-14 Score=130.70 Aligned_cols=189 Identities=17% Similarity=0.063 Sum_probs=130.7
Q ss_pred CcccchhhhHHHHHHHhhc----cCceEEEEEeCCCCchHHHHHHHHHhhhcc---CCC--CCEEEEEEecCCC-ChHHH
Q 038882 157 PRIIGQESIFDDVWRCIIE----EQVGIIGLYGAGGVGKTTLLKQLNNKLCHE---RHD--FDIVIWVVVSKDL-NLEKV 226 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~~--f~~~~wv~vs~~~-~~~~~ 226 (347)
..|+||+++++.+.+++.. ...+.+.|+|++|+|||+||+.+++..... ... ....+|++++... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 6799999999999987754 345689999999999999999999876211 111 3466788887776 88888
Q ss_pred HHHHHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCccc--cccc-ccCCCCCCCCcEEEEecCChhHHhh
Q 038882 227 QEDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPVD--LTKV-GVPIPNSTNASKVLFTTRYKEVCGK 303 (347)
Q Consensus 227 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~~l-~~~l~~~~~gs~iiiTtR~~~v~~~ 303 (347)
+..++.++..........+.......+.+.+..++.+|||||++.... +... ...+.....+..+|+||+.......
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~ 179 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDY 179 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHhh
Confidence 889888873212222234456667788888887777999999976421 1111 1111111167889999987532111
Q ss_pred c------CCCceeecCCCCHHHHHHHHhhhh---------ChhhHHHHHHHhC---Cccc
Q 038882 304 M------EAHKKLRVECLTADEAWMLFNVKV---------GEDTIDKIFVKCC---CHTF 345 (347)
Q Consensus 304 ~------~~~~~~~l~~L~~~ea~~Lf~~~~---------~~~~~~~I~~~~~---G~PL 345 (347)
+ .....+.+++++.++..++|...+ .++....|++.|+ |.|.
T Consensus 180 l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r 239 (384)
T 2qby_B 180 MEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDAR 239 (384)
T ss_dssp SCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHH
T ss_pred hCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHH
Confidence 0 112389999999999999998763 2456788888888 8763
No 10
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.52 E-value=5.4e-14 Score=130.48 Aligned_cols=187 Identities=16% Similarity=0.154 Sum_probs=127.9
Q ss_pred CcccchhhhHHHHHHHhhc----cCceEEEEEeCCCCchHHHHHHHHHhhhccCCC-CCEEEEEEecCCCChHHHHHHHH
Q 038882 157 PRIIGQESIFDDVWRCIIE----EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHD-FDIVIWVVVSKDLNLEKVQEDIG 231 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~-f~~~~wv~vs~~~~~~~~~~~i~ 231 (347)
..|+||+++++.|.+++.. .....+.|+|++|+|||||++.+++.. ..... -...+|+++....+...++..++
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKL-HKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHH-HHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 6799999999999998874 456789999999999999999999876 22111 23567888777778888888888
Q ss_pred HhcCCCCccccccChHHHHHHHHHHhc--CCcEEEEEeCCCCcc------cccccccCCCC-CCCCcEEEEecCChhHHh
Q 038882 232 KKIDLFSESWKNKSLVEKSCAIFKILS--NKKFVLLLDDVWEPV------DLTKVGVPIPN-STNASKVLFTTRYKEVCG 302 (347)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~------~~~~l~~~l~~-~~~gs~iiiTtR~~~v~~ 302 (347)
.+++.... ....+..+....+.+.+. +++.+||||+++... .+..+...+.. ...+..+|+||+......
T Consensus 99 ~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~ 177 (386)
T 2qby_A 99 ESLDVKVP-FTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVD 177 (386)
T ss_dssp TTTSCCCC-SSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGG
T ss_pred HHhCCCCC-CCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHh
Confidence 88865321 123345555666666665 358999999996532 11122111111 234567788888764322
Q ss_pred hcC-------CCceeecCCCCHHHHHHHHhhhh---------ChhhHHHHHHHhC---Cccc
Q 038882 303 KME-------AHKKLRVECLTADEAWMLFNVKV---------GEDTIDKIFVKCC---CHTF 345 (347)
Q Consensus 303 ~~~-------~~~~~~l~~L~~~ea~~Lf~~~~---------~~~~~~~I~~~~~---G~PL 345 (347)
.+. ....+.+++++.++..+++.+.+ .++....|.+.++ |+|.
T Consensus 178 ~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r 239 (386)
T 2qby_A 178 LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDAR 239 (386)
T ss_dssp GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHH
T ss_pred hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHH
Confidence 221 11478999999999999998753 2456777888887 8874
No 11
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.50 E-value=7.6e-13 Score=123.04 Aligned_cols=180 Identities=15% Similarity=0.127 Sum_probs=127.5
Q ss_pred CcccchhhhHHHHHHHhhc----cCce--EEEEEeCCCCchHHHHHHHHHhhhccCCC-CCEEEEEEecCCCChHHHHHH
Q 038882 157 PRIIGQESIFDDVWRCIIE----EQVG--IIGLYGAGGVGKTTLLKQLNNKLCHERHD-FDIVIWVVVSKDLNLEKVQED 229 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~----~~~~--vi~I~G~~GiGKTtLa~~v~~~~~~~~~~-f~~~~wv~vs~~~~~~~~~~~ 229 (347)
+.++||+++++.|.+++.. .... .+.|+|++|+|||||++.+++.. ... -...+|++++...+...++..
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY---KDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH---TTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH---hhhcCeeEEEEeCccCCCHHHHHHH
Confidence 6799999999999998876 2334 89999999999999999999876 222 235678888787888899999
Q ss_pred HHHhcCCCCccccccChHHHHHHHHHHhc--CCcEEEEEeCCCCc--ccccccccCCCCCC----CCcEEEEecCChhHH
Q 038882 230 IGKKIDLFSESWKNKSLVEKSCAIFKILS--NKKFVLLLDDVWEP--VDLTKVGVPIPNST----NASKVLFTTRYKEVC 301 (347)
Q Consensus 230 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~--~~~~~l~~~l~~~~----~gs~iiiTtR~~~v~ 301 (347)
++..++.... ....+.......+...+. +++.+||||+++.. .....+...+.... .+..+|++|+.....
T Consensus 94 l~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 94 IARSLNIPFP-RRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp HHHHTTCCCC-SSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred HHHHhCccCC-CCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 9998865321 123345566666666664 56899999999664 22233322222111 467788888776443
Q ss_pred hhcC-------CCceeecCCCCHHHHHHHHhhhhC---------hhhHHHHHHHh
Q 038882 302 GKME-------AHKKLRVECLTADEAWMLFNVKVG---------EDTIDKIFVKC 340 (347)
Q Consensus 302 ~~~~-------~~~~~~l~~L~~~ea~~Lf~~~~~---------~~~~~~I~~~~ 340 (347)
..+. ....+.+++++.++..+++...+. ++.+..|++.+
T Consensus 173 ~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 227 (389)
T 1fnn_A 173 NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADIT 227 (389)
T ss_dssp HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHH
T ss_pred HHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 2221 113689999999999999987642 46788899999
No 12
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.48 E-value=2.5e-13 Score=126.06 Aligned_cols=186 Identities=14% Similarity=0.079 Sum_probs=128.6
Q ss_pred CcccchhhhHHHHHHHhhc----cCceEEEEEeCCCCchHHHHHHHHHhhhccC---CCCCEEEEEEecCCCChHHHHHH
Q 038882 157 PRIIGQESIFDDVWRCIIE----EQVGIIGLYGAGGVGKTTLLKQLNNKLCHER---HDFDIVIWVVVSKDLNLEKVQED 229 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~~f~~~~wv~vs~~~~~~~~~~~ 229 (347)
+.|+||+++++.+..++.. ...+.+.|+|++|+|||+||+.+++...... ..-...+|+++....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 6799999999999998854 3567899999999999999999998761110 11235678888888888999999
Q ss_pred HHHhcCCCCccccccChHHHHHHHHHHhc--CCcEEEEEeCCCCcccc----ccc---ccCCCCC--CCCcEEEEecCCh
Q 038882 230 IGKKIDLFSESWKNKSLVEKSCAIFKILS--NKKFVLLLDDVWEPVDL----TKV---GVPIPNS--TNASKVLFTTRYK 298 (347)
Q Consensus 230 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~----~~l---~~~l~~~--~~gs~iiiTtR~~ 298 (347)
++.+++.... ....+..+....+.+.+. +++.+|||||++..... +.+ ....... ..+..+|.||+..
T Consensus 99 l~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 99 IAEAVGVRVP-FTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHSCCCC-SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHhCCCCC-CCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 9998865321 223345666677777774 46899999999764321 222 1111111 3456788888765
Q ss_pred hH--------HhhcCCCceeecCCCCHHHHHHHHhhhhC---------hhhHHHHHHHhC---Ccc
Q 038882 299 EV--------CGKMEAHKKLRVECLTADEAWMLFNVKVG---------EDTIDKIFVKCC---CHT 344 (347)
Q Consensus 299 ~v--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~---------~~~~~~I~~~~~---G~P 344 (347)
.. ...+. ...+.+++++.++..+++.+.+. ++....|++.++ |.|
T Consensus 178 ~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~ 242 (387)
T 2v1u_A 178 GFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDA 242 (387)
T ss_dssp TTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCH
T ss_pred chHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCH
Confidence 32 22111 13789999999999999987642 456788888888 887
No 13
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.44 E-value=5.8e-13 Score=115.11 Aligned_cols=182 Identities=12% Similarity=0.091 Sum_probs=109.1
Q ss_pred CcccchhhhHHHHHHHhhccC-ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQ-VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
..++||+..++.|..++..+. .+.+.|+|++|+||||||+.+++.. .....+.. ...... .....+.....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~-~~~~~~~~------~~~~~~-~~~~~~~~~~~ 94 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL-NCETGITA------TPCGVC-DNCREIEQGRF 94 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH-HCTTCSCS------SCCSCS-HHHHHHHTTCC
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-cCCCCCCC------CCCccc-HHHHHHhccCC
Confidence 468999999999999997753 3578999999999999999999876 22111100 000000 01111111100
Q ss_pred CCCccc--cccChHHHHHHHHHHh-----cCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCChhHH-h-hc
Q 038882 236 LFSESW--KNKSLVEKSCAIFKIL-----SNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRYKEVC-G-KM 304 (347)
Q Consensus 236 ~~~~~~--~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~~v~-~-~~ 304 (347)
...... ...........+.+.+ .+++.+|||||++.. ..+..+...+.....+..+|+||+..... . ..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~ 174 (250)
T 1njg_A 95 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 174 (250)
T ss_dssp SSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHH
T ss_pred cceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHH
Confidence 000000 0001111122222222 346799999999653 34444444443345678888888765421 1 11
Q ss_pred CCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcccC
Q 038882 305 EAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHTFV 346 (347)
Q Consensus 305 ~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~PLA 346 (347)
.....+.+++++.++..+++.+.+ .++....|++.|+|+|..
T Consensus 175 ~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~ 223 (250)
T 1njg_A 175 SRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRD 223 (250)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHH
T ss_pred HHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHH
Confidence 223578999999999999998765 256788999999999964
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.43 E-value=1.1e-12 Score=111.88 Aligned_cols=171 Identities=12% Similarity=0.109 Sum_probs=110.0
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDL 236 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 236 (347)
..++|++..++.+.+++.....+.+.|+|++|+|||+||+.+++.. .....-...+.+..+.......+...+......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL-FGENWRDNFIEMNASDERGIDVVRHKIKEFART 95 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH-HGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTS
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH-hccccccceEEeccccccChHHHHHHHHHHhcc
Confidence 4689999999999999988766669999999999999999999875 211111123334443333322222211111110
Q ss_pred CCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCChhHH--hhcCCCceeec
Q 038882 237 FSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRYKEVC--GKMEAHKKLRV 312 (347)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~~v~--~~~~~~~~~~l 312 (347)
.. ...+++.+|||||++.. .....+...+.....++++|+||+..... ........+.+
T Consensus 96 ~~-----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~ 158 (226)
T 2chg_A 96 AP-----------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRF 158 (226)
T ss_dssp CC-----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred cC-----------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeec
Confidence 00 01257899999999764 22333333333334567889888865421 11122247899
Q ss_pred CCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCccc
Q 038882 313 ECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHTF 345 (347)
Q Consensus 313 ~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~PL 345 (347)
.+++.++..+++.+.+ .++....|++.++|+|.
T Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r 198 (226)
T 2chg_A 159 KPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFR 198 (226)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 9999999999998765 25678889999999985
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.29 E-value=1.1e-11 Score=112.16 Aligned_cols=171 Identities=16% Similarity=0.161 Sum_probs=109.2
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDL 236 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 236 (347)
..++|++..++.|.+++..+..+.+.++|++|+|||++|+.+++.. .........++++.+....... +++++..+..
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~ 98 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL-LGRSYADGVLELNASDDRGIDV-VRNQIKHFAQ 98 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH-HGGGHHHHEEEECTTSCCSHHH-HHTHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh-cCCcccCCEEEecCccccChHH-HHHHHHHHHh
Confidence 4689999999999999988765569999999999999999999875 1111111233443333222211 1122211110
Q ss_pred CCccccccChHHHHHHHHHHh-cCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCChhH-Hhh-cCCCceee
Q 038882 237 FSESWKNKSLVEKSCAIFKIL-SNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRYKEV-CGK-MEAHKKLR 311 (347)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~~v-~~~-~~~~~~~~ 311 (347)
.. ..+ .+++.+||+||++.. ..+..+...+.....++.+|+||+...- ... ......+.
T Consensus 99 ~~----------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~ 162 (323)
T 1sxj_B 99 KK----------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILR 162 (323)
T ss_dssp BC----------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred cc----------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEe
Confidence 00 001 346899999999764 2344443333333456788888876432 111 12234789
Q ss_pred cCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCccc
Q 038882 312 VECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHTF 345 (347)
Q Consensus 312 l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~PL 345 (347)
+.+++.++..+++...+ .++.+..|++.|+|.|.
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r 203 (323)
T 1sxj_B 163 YSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMR 203 (323)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 99999999999998754 25678899999999984
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.12 E-value=8.4e-11 Score=106.50 Aligned_cols=168 Identities=13% Similarity=0.114 Sum_probs=105.8
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDL 236 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 236 (347)
..++|+++.++.|.+++..+..+.+.++|++|+|||++|+.+++.. .....-...+.+..+....... ++..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~-~~~~------ 96 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL-FGENWRHNFLELNASDERGINV-IREK------ 96 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH-HGGGHHHHEEEEETTCHHHHHT-THHH------
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh-cCCcccCceEEeeccccCchHH-HHHH------
Confidence 4689999999999999988766669999999999999999999875 1111001122333222100000 0000
Q ss_pred CCccccccChHHHHHHHHHH--h-cCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCChhH-Hhh-cCCCce
Q 038882 237 FSESWKNKSLVEKSCAIFKI--L-SNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRYKEV-CGK-MEAHKK 309 (347)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~~v-~~~-~~~~~~ 309 (347)
...+... + .+++.++|+||++.. ..+..+...+.....++++|+||..... ... ......
T Consensus 97 -------------~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~ 163 (327)
T 1iqp_A 97 -------------VKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAI 163 (327)
T ss_dssp -------------HHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEE
T ss_pred -------------HHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcE
Confidence 0011100 1 257889999999764 2334443333333456788888876532 111 111237
Q ss_pred eecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCccc
Q 038882 310 LRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHTF 345 (347)
Q Consensus 310 ~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~PL 345 (347)
+.+.+++.++..+++.+.+ .++....|++.++|+|-
T Consensus 164 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r 206 (327)
T 1iqp_A 164 FRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMR 206 (327)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHH
T ss_pred EEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHH
Confidence 8999999999999998754 35678889999999874
No 17
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.04 E-value=8.7e-10 Score=99.39 Aligned_cols=167 Identities=11% Similarity=0.131 Sum_probs=106.6
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCC-EEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFD-IVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
..++|++..++.|.+++..+..+.+.++|++|+|||++|+.+++.. .. ..+. ..+.++.+......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l-~~-~~~~~~~~~~~~~~~~~~~----------- 83 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL-FG-ENWRDNFIEMNASDERGID----------- 83 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH-HT-TCHHHHCEEEETTSTTCTT-----------
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh-cC-CcccCCeEEEeCccccChH-----------
Confidence 4589999999999999888766669999999999999999999875 11 1111 12233333211100
Q ss_pred CCCccccccChHHHHHHHHHH--h-cCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCChhH-Hh-hcCCCc
Q 038882 236 LFSESWKNKSLVEKSCAIFKI--L-SNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRYKEV-CG-KMEAHK 308 (347)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~~v-~~-~~~~~~ 308 (347)
........+... + .+++.++|+|+++.. .....+...+.....++++|+||....- .. ......
T Consensus 84 ---------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 154 (319)
T 2chq_A 84 ---------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (319)
T ss_dssp ---------TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCE
T ss_pred ---------HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCe
Confidence 011111111110 1 256889999999664 2344454444444567788888876541 11 112234
Q ss_pred eeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCccc
Q 038882 309 KLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHTF 345 (347)
Q Consensus 309 ~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~PL 345 (347)
.+.+.+++.++..+++.+.+ .++.+..|+..++|+|-
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r 198 (319)
T 2chq_A 155 VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFR 198 (319)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHH
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 78999999999999998654 35678888888898763
No 18
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.02 E-value=2.8e-09 Score=95.69 Aligned_cols=168 Identities=11% Similarity=0.065 Sum_probs=104.9
Q ss_pred cccchhhhHHHHHHHhhc----cCceEEEEEeCCCCchHHHHHHHHHhhhccCC--CC-C-EEEEEEecCCCChHHHHHH
Q 038882 158 RIIGQESIFDDVWRCIIE----EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERH--DF-D-IVIWVVVSKDLNLEKVQED 229 (347)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--~f-~-~~~wv~vs~~~~~~~~~~~ 229 (347)
.+.||+++++.|...|.. +..+.+.|+|++|+|||++++.+++....... .. . ..+++++....+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 479999999999988765 46778999999999999999999998722111 11 1 4567777777888999999
Q ss_pred HHHhcCCCCccccccChHHHHHHHHHHh---cCCcEEEEEeCCCCcccccccccCC--C-CCCCCcEEEEecCChhH---
Q 038882 230 IGKKIDLFSESWKNKSLVEKSCAIFKIL---SNKKFVLLLDDVWEPVDLTKVGVPI--P-NSTNASKVLFTTRYKEV--- 300 (347)
Q Consensus 230 i~~~l~~~~~~~~~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~~~~l~~~l--~-~~~~gs~iiiTtR~~~v--- 300 (347)
|++++..... ..... .+....+...+ .+++++++||+++....-+.+...+ + .......||.++...+.
T Consensus 101 I~~~L~g~~~-~~~~~-~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~ 178 (318)
T 3te6_A 101 IWFAISKENL-CGDIS-LEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIRE 178 (318)
T ss_dssp HHHHHSCCC---CCCC-HHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHH
T ss_pred HHHHhcCCCC-CchHH-HHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchh
Confidence 9999864321 11122 22233333333 4578999999997754222221111 1 11112233444433221
Q ss_pred ------HhhcCCCceeecCCCCHHHHHHHHhhhh
Q 038882 301 ------CGKMEAHKKLRVECLTADEAWMLFNVKV 328 (347)
Q Consensus 301 ------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 328 (347)
.+.+. ...+.+++++.++-.+++.+++
T Consensus 179 ~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 179 QINIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred hcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 12221 1368999999999999998875
No 19
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.99 E-value=3.5e-09 Score=97.68 Aligned_cols=180 Identities=11% Similarity=0.109 Sum_probs=105.6
Q ss_pred CcccchhhhHHHHHHHhhccC-ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQ-VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
..++|+++.++.|.+++..+. ...+.|+|++|+||||+|+.+++.. .....+. ...+........+.....
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l-~~~~~~~-------~~~~~~~~~~~~~~~~~~ 87 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL-NCETGIT-------ATPCGVCDNCREIEQGRF 87 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHH-SCTTCSC-------SSCCSSSHHHHHHHTSCC
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHh-CCCCCCC-------CCCCcccHHHHHHhccCC
Confidence 458999999999999997754 3568899999999999999999876 2211110 001111111222221110
Q ss_pred CCC---ccccccChHHHHHHHHHHh-----cCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCChhH-H-hh
Q 038882 236 LFS---ESWKNKSLVEKSCAIFKIL-----SNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRYKEV-C-GK 303 (347)
Q Consensus 236 ~~~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~~v-~-~~ 303 (347)
..- ........... ..+.+.+ .+++.+||+||++.. .....+...+.....+..+|++|....- . ..
T Consensus 88 ~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l 166 (373)
T 1jr3_A 88 VDLIEIDAASRTKVEDT-RDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (373)
T ss_dssp SSCEEEETTCSCCSSCH-HHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHH
T ss_pred CceEEecccccCCHHHH-HHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHH
Confidence 000 00000111111 2222222 346789999999654 2334443333333456677777765431 1 11
Q ss_pred cCCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCccc
Q 038882 304 MEAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHTF 345 (347)
Q Consensus 304 ~~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~PL 345 (347)
......+.+.+++.++..+++.+.+ .++.+..|++.++|+|.
T Consensus 167 ~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r 215 (373)
T 1jr3_A 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLR 215 (373)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHH
T ss_pred HhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHH
Confidence 1223578999999999999998654 24567889999999985
No 20
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.94 E-value=1.2e-09 Score=90.59 Aligned_cols=151 Identities=15% Similarity=0.191 Sum_probs=85.9
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCC----CCCEEEEEEecCCCChHHHHHHHHH
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERH----DFDIVIWVVVSKDLNLEKVQEDIGK 232 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----~f~~~~wv~vs~~~~~~~~~~~i~~ 232 (347)
..++||+++++.+.+.+.......+.|+|++|+|||+||+.+++....... .....++++++. + ..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~----~~ 91 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------L----VA 91 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------H----HT
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------H----hc
Confidence 468999999999999998876778899999999999999999987621110 112334443321 1 10
Q ss_pred hcCCCCccccccChHHHHHHHHHHh--cCCcEEEEEeCCCCcc---------cccccccCCCCCCCCcEEEEecCChhHH
Q 038882 233 KIDLFSESWKNKSLVEKSCAIFKIL--SNKKFVLLLDDVWEPV---------DLTKVGVPIPNSTNASKVLFTTRYKEVC 301 (347)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~---------~~~~l~~~l~~~~~gs~iiiTtR~~~v~ 301 (347)
... .. .........+.+.+ .+++.+|+|||++... .+..+...+.. ..+..+|.||......
T Consensus 92 ~~~-----~~-~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~ 164 (195)
T 1jbk_A 92 GAK-----YR-GEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-RGELHCVGATTLDEYR 164 (195)
T ss_dssp TTC-----SH-HHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH-TTSCCEEEEECHHHHH
T ss_pred cCC-----cc-ccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc-cCCeEEEEeCCHHHHH
Confidence 000 00 00111112222222 3568899999996541 11111111111 2345577777655422
Q ss_pred h-------hcCCCceeecCCCCHHHHHHHH
Q 038882 302 G-------KMEAHKKLRVECLTADEAWMLF 324 (347)
Q Consensus 302 ~-------~~~~~~~~~l~~L~~~ea~~Lf 324 (347)
. .......+.+.+++.++..+++
T Consensus 165 ~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 165 QYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 1 1111236889999998887654
No 21
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.86 E-value=6.9e-09 Score=93.84 Aligned_cols=159 Identities=14% Similarity=0.076 Sum_probs=96.8
Q ss_pred CcccchhhhHHHHHHHhhc-----cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHH
Q 038882 157 PRIIGQESIFDDVWRCIIE-----EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIG 231 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 231 (347)
..|+|++..++.+..++.. .....+.|+|++|+|||+||+.+++.. ... ..+++++......++...+
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~~---~~~~~~~~~~~~~~l~~~l- 84 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GVN---LRVTSGPAIEKPGDLAAIL- 84 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TCC---EEEECTTTCCSHHHHHHHH-
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CCC---EEEEeccccCChHHHHHHH-
Confidence 5689999999988888753 234678999999999999999999876 222 2344433322222221111
Q ss_pred HhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCcc--cccccccCCC--------C----------CCCCcEE
Q 038882 232 KKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPV--DLTKVGVPIP--------N----------STNASKV 291 (347)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~l~--------~----------~~~gs~i 291 (347)
... ..++.+|+|||++... ....+...+. . ...+..+
T Consensus 85 ----------------------~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 85 ----------------------ANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp ----------------------TTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred ----------------------HHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 000 1245688888886542 1111110000 0 0124567
Q ss_pred EEecCChhH-Hhhc-C-CCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCccc
Q 038882 292 LFTTRYKEV-CGKM-E-AHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHTF 345 (347)
Q Consensus 292 iiTtR~~~v-~~~~-~-~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~PL 345 (347)
|.||..... ...+ . ....+.+.+++.++...++.+.+ .++....|+..++|+|-
T Consensus 142 i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r 205 (324)
T 1hqc_A 142 IGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMR 205 (324)
T ss_dssp EEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHH
T ss_pred EEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHH
Confidence 776664421 1111 1 12478999999999999988764 25678889999999884
No 22
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.82 E-value=1.7e-09 Score=93.18 Aligned_cols=158 Identities=11% Similarity=0.101 Sum_probs=94.6
Q ss_pred Ccccch---hhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHh
Q 038882 157 PRIIGQ---ESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKK 233 (347)
Q Consensus 157 ~~~vGR---~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 233 (347)
..|+|. +..++.+..+...+..+.+.|+|++|+|||+||+.+++.. ... ...+.|+.++..... +...
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~-~~~--~~~~~~~~~~~~~~~------~~~~ 98 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARA-NEL--ERRSFYIPLGIHASI------STAL 98 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHH-HHT--TCCEEEEEGGGGGGS------CGGG
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHc--CCeEEEEEHHHHHHH------HHHH
Confidence 456763 3556666666665567889999999999999999999876 222 234566655432100 0000
Q ss_pred cCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCccc----ccccccCCCC-CCCC-cEEEEecCChh--------
Q 038882 234 IDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPVD----LTKVGVPIPN-STNA-SKVLFTTRYKE-------- 299 (347)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----~~~l~~~l~~-~~~g-s~iiiTtR~~~-------- 299 (347)
+ +.+ .++.+|||||++.... ...+...+.. ...+ .++|+||+...
T Consensus 99 ~--------------------~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~ 157 (242)
T 3bos_A 99 L--------------------EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLP 157 (242)
T ss_dssp G--------------------TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCH
T ss_pred H--------------------Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhh
Confidence 0 001 3467999999965421 1222111110 0112 24777776332
Q ss_pred -HHhhcCCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 300 -VCGKMEAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 300 -v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
+...+.....+.+++++.++..+++.+.+ .++....|++.++|++
T Consensus 158 ~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~ 210 (242)
T 3bos_A 158 DLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDL 210 (242)
T ss_dssp HHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCH
T ss_pred hhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCH
Confidence 12222222578999999999999998764 3567888889988875
No 23
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.82 E-value=2.5e-08 Score=88.55 Aligned_cols=164 Identities=15% Similarity=0.154 Sum_probs=97.7
Q ss_pred CcccchhhhHHHHHHHhhc-------------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCCh
Q 038882 157 PRIIGQESIFDDVWRCIIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNL 223 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 223 (347)
..++|.+..++.|.+.+.. .....+.|+|++|+|||+||+.+++.. ... .+.+..+.-..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~---~~~v~~~~~~~- 89 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NAT---FIRVVGSELVK- 89 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCE---EEEEEGGGGCC-
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehHHHHH-
Confidence 5689999999999888743 245679999999999999999998875 222 22333222110
Q ss_pred HHHHHHHHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCcc----------------cccccccCCC--CC
Q 038882 224 EKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPV----------------DLTKVGVPIP--NS 285 (347)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------------~~~~l~~~l~--~~ 285 (347)
.............+......++.+|+|||++... .+..+...+. ..
T Consensus 90 ----------------~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 90 ----------------KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp ----------------CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred ----------------hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 0001111122222333334577899999995431 0111111111 12
Q ss_pred CCCcEEEEecCChhHHh--hc---CCCceeecCCCCHHHHHHHHhhhhC------hhhHHHHHHHhCCc
Q 038882 286 TNASKVLFTTRYKEVCG--KM---EAHKKLRVECLTADEAWMLFNVKVG------EDTIDKIFVKCCCH 343 (347)
Q Consensus 286 ~~gs~iiiTtR~~~v~~--~~---~~~~~~~l~~L~~~ea~~Lf~~~~~------~~~~~~I~~~~~G~ 343 (347)
..+..||.||....... .. .....+.+++.+.++..+++...+. +.....|...+.|.
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~ 222 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGC 222 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTC
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCC
Confidence 34567788887653321 11 1123689999999999999987753 23467777777764
No 24
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.78 E-value=1.4e-08 Score=92.94 Aligned_cols=180 Identities=11% Similarity=0.106 Sum_probs=98.8
Q ss_pred CcccchhhhHHHHHHHh-hccCceEEEEEeCCCCchHHHHHHHHHhhhccC-C--CCCE--------------------E
Q 038882 157 PRIIGQESIFDDVWRCI-IEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHER-H--DFDI--------------------V 212 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L-~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~--~f~~--------------------~ 212 (347)
..++|.+..++.+.+++ ..+....+.|+|++|+||||+++.++....... . .++. .
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYH 93 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSE
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccce
Confidence 45899999999999988 655544599999999999999999988541111 0 0110 0
Q ss_pred EEEEecCCC-ChHHHHHHHHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCcc--cccccccCCCCCCCCc
Q 038882 213 IWVVVSKDL-NLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPV--DLTKVGVPIPNSTNAS 289 (347)
Q Consensus 213 ~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs 289 (347)
+.+..+... ......++++..+..... ..... .+.. +.+++-++|||++.... ....+...+.....++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~-~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~ 165 (354)
T 1sxj_E 94 LEITPSDMGNNDRIVIQELLKEVAQMEQ------VDFQD-SKDG-LAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNI 165 (354)
T ss_dssp EEECCC----CCHHHHHHHHHHHTTTTC--------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTE
T ss_pred EEecHhhcCCcchHHHHHHHHHHHHhcc------ccccc-cccc-cCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCC
Confidence 111111000 000012222222111000 00000 0000 23467799999997742 1222322222223467
Q ss_pred EEEEecCChh-HHhhc-CCCceeecCCCCHHHHHHHHhhhh-------C-hhhHHHHHHHhCCcc
Q 038882 290 KVLFTTRYKE-VCGKM-EAHKKLRVECLTADEAWMLFNVKV-------G-EDTIDKIFVKCCCHT 344 (347)
Q Consensus 290 ~iiiTtR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~-------~-~~~~~~I~~~~~G~P 344 (347)
.+|++|.+.. +...+ .....+++.+++.++..+++.+.+ . ++.+..|++.++|.+
T Consensus 166 ~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~ 230 (354)
T 1sxj_E 166 RLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNL 230 (354)
T ss_dssp EEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCH
T ss_pred EEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCH
Confidence 7888877643 21111 222578999999999999998754 3 567889999999976
No 25
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.77 E-value=3.4e-08 Score=93.26 Aligned_cols=169 Identities=13% Similarity=0.155 Sum_probs=100.5
Q ss_pred ccc-chhhh--HHHHHHHhhccC-ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHh
Q 038882 158 RII-GQESI--FDDVWRCIIEEQ-VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKK 233 (347)
Q Consensus 158 ~~v-GR~~~--~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 233 (347)
.|+ |.... ...+......+. ...+.|+|++|+||||||+.+++.. .....-..+++++.+ .+..++...
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l-~~~~~~~~v~~v~~~------~~~~~~~~~ 178 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYV-VQNEPDLRVMYITSE------KFLNDLVDS 178 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHH-HHHCCSSCEEEEEHH------HHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHhCCCCeEEEeeHH------HHHHHHHHH
Confidence 455 65443 333333333333 5789999999999999999999876 222111234555433 233444443
Q ss_pred cCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCccc----ccccccCCCC-CCCCcEEEEecCCh---------h
Q 038882 234 IDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPVD----LTKVGVPIPN-STNASKVLFTTRYK---------E 299 (347)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----~~~l~~~l~~-~~~gs~iiiTtR~~---------~ 299 (347)
+... . ...+...+..++-+|+|||++.... .+.+...+.. ...|..||+||.+. .
T Consensus 179 ~~~~-------~----~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~ 247 (440)
T 2z4s_A 179 MKEG-------K----LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_dssp HHTT-------C----HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHH
T ss_pred HHcc-------c----HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHH
Confidence 3210 1 1223344444678999999965432 2222222210 13467888888763 2
Q ss_pred HHhhcCCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 300 VCGKMEAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 300 v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
+...+.....+.+++++.++-.+++.+.+ .++.+..|+..+.|++
T Consensus 248 L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~ 299 (440)
T 2z4s_A 248 LVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNL 299 (440)
T ss_dssp HHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCH
T ss_pred HHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCH
Confidence 23334334578999999999999998765 3566788888888865
No 26
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.77 E-value=1.5e-08 Score=92.71 Aligned_cols=181 Identities=13% Similarity=0.148 Sum_probs=104.5
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCC-CEEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDF-DIVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f-~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
..++|+++.++.|..++..+..+.+.++|++|+||||+|+.+++.. .....+ .....++.+.......+ ++.+..+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 114 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL-YGPDLMKSRILELNASDERGISIV-REKVKNFA 114 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH-HHHHHHTTSEEEECSSSCCCHHHH-TTHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh-CCCcccccceEEEccccccchHHH-HHHHHHHh
Confidence 4689999999999999988755558999999999999999999875 211011 12233333332222222 22111111
Q ss_pred CCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCChhH-Hhh-cCCCceee
Q 038882 236 LFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRYKEV-CGK-MEAHKKLR 311 (347)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~~v-~~~-~~~~~~~~ 311 (347)
..... ..... .....-.+++-+|++|+++.. .....+...+.......++|++|....- ... ......+.
T Consensus 115 ~~~~~-~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~ 188 (353)
T 1sxj_D 115 RLTVS-KPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFR 188 (353)
T ss_dssp HSCCC-CCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEE
T ss_pred hhccc-ccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEE
Confidence 00000 00000 000111235679999998654 2223333323223345677777755431 111 11123789
Q ss_pred cCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCccc
Q 038882 312 VECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHTF 345 (347)
Q Consensus 312 l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~PL 345 (347)
+.+++.++....+.+.+ .++.+..|++.++|.|-
T Consensus 189 ~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r 229 (353)
T 1sxj_D 189 FKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLR 229 (353)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHH
T ss_pred eCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHH
Confidence 99999999999988754 35678889999999873
No 27
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.74 E-value=1.2e-07 Score=89.57 Aligned_cols=159 Identities=15% Similarity=0.168 Sum_probs=96.8
Q ss_pred CcccchhhhH---HHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCC-CChHHHHHHHHH
Q 038882 157 PRIIGQESIF---DDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKD-LNLEKVQEDIGK 232 (347)
Q Consensus 157 ~~~vGR~~~~---~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~ 232 (347)
..++|.++.+ ..|...+..+....+.|+|++|+||||||+.+++.. ...| +.++.. ..... ++.++.
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~---~~~f-----~~l~a~~~~~~~-ir~~~~ 96 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA---NADV-----ERISAVTSGVKE-IREAIE 96 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT---TCEE-----EEEETTTCCHHH-HHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh---CCCe-----EEEEeccCCHHH-HHHHHH
Confidence 4689999888 788888888877889999999999999999999876 2222 222221 11211 111111
Q ss_pred hcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEE-ecCChhH---HhhcCC
Q 038882 233 KIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLF-TTRYKEV---CGKMEA 306 (347)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iii-TtR~~~v---~~~~~~ 306 (347)
.. ......+++.+|+||+++.. ...+.++..+.. + ...+|. ||.+... ......
T Consensus 97 ~a------------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL~sR 156 (447)
T 3pvs_A 97 RA------------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSALLSR 156 (447)
T ss_dssp HH------------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHHHTT
T ss_pred HH------------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHHhCc
Confidence 10 01112467899999999764 234444433332 1 233443 5555431 111222
Q ss_pred CceeecCCCCHHHHHHHHhhhh--------------ChhhHHHHHHHhCCcc
Q 038882 307 HKKLRVECLTADEAWMLFNVKV--------------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 307 ~~~~~l~~L~~~ea~~Lf~~~~--------------~~~~~~~I~~~~~G~P 344 (347)
...+.+++++.++...++.+.+ .++....|++.++|.+
T Consensus 157 ~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~ 208 (447)
T 3pvs_A 157 ARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDA 208 (447)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCH
T ss_pred eeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCH
Confidence 3478999999999999987753 1456777888888764
No 28
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.74 E-value=1.1e-07 Score=83.79 Aligned_cols=166 Identities=14% Similarity=0.110 Sum_probs=94.7
Q ss_pred CcccchhhhHHHHHH-------Hhh---ccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHH
Q 038882 157 PRIIGQESIFDDVWR-------CII---EEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKV 226 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~-------~L~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 226 (347)
..++|....++.+.. .+. ......+.|+|++|+|||+||+.+++.. ...| +.+..+...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~---~~i~~~~~~----- 101 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPF---IKICSPDKM----- 101 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSE---EEEECGGGC-----
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEeCHHHh-----
Confidence 457888777666665 332 3356789999999999999999999875 2222 222222100
Q ss_pred HHHHHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCc-----------cc-ccccccCCC---CCCCCcEE
Q 038882 227 QEDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEP-----------VD-LTKVGVPIP---NSTNASKV 291 (347)
Q Consensus 227 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~-~~~l~~~l~---~~~~gs~i 291 (347)
++. . ...........+......++.+|+|||++.. .. ...+...+. .......|
T Consensus 102 -------~g~-~---~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 102 -------IGF-S---ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp -------TTC-C---HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred -------cCC-c---hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 110 0 0000112222333334467899999998542 01 111211111 12234456
Q ss_pred EEecCChhHHhh---cCC-CceeecCCCCH-HHHHHHHhhh--hChhhHHHHHHHhCCcc
Q 038882 292 LFTTRYKEVCGK---MEA-HKKLRVECLTA-DEAWMLFNVK--VGEDTIDKIFVKCCCHT 344 (347)
Q Consensus 292 iiTtR~~~v~~~---~~~-~~~~~l~~L~~-~ea~~Lf~~~--~~~~~~~~I~~~~~G~P 344 (347)
|.||........ ... ...+.+++++. ++...++.+. ..++.+..|++.+.|.+
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~~~~~~~~~l~~~~~g~~ 230 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGNFKDKERTTIAQQVKGKK 230 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTCSCHHHHHHHHHHHTTSE
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCC
Confidence 778877754332 111 34688999988 7777777654 24667888999988854
No 29
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.73 E-value=2.2e-07 Score=81.18 Aligned_cols=165 Identities=14% Similarity=0.133 Sum_probs=92.9
Q ss_pred CcccchhhhHHHHHHHhh---c---------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChH
Q 038882 157 PRIIGQESIFDDVWRCII---E---------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLE 224 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~---~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 224 (347)
..++|.+..++.|.+++. . ...+.+.|+|++|+|||+||+.+++.. ... .+.+..+.-.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~---~~~~~~~~~~~-- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVP---FLAMAGAEFVE-- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCC---EEEEETTTTSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---EEEechHHHHh--
Confidence 467999887777766542 1 123568899999999999999999876 222 23343332110
Q ss_pred HHHHHHHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCcc-------------c----ccccccCCC--CC
Q 038882 225 KVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPV-------------D----LTKVGVPIP--NS 285 (347)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------------~----~~~l~~~l~--~~ 285 (347)
.. ...........+.......+.+|+|||++... . +..+...+. ..
T Consensus 78 --------~~-------~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 78 --------VI-------GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp --------SS-------TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred --------hc-------cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 00 01111222223333334568999999997641 0 111111111 12
Q ss_pred CCCcEEEEecCChhHH-hh-c---CCCceeecCCCCHHHHHHHHhhhhC-------hh-hHHHHHHHhCCcc
Q 038882 286 TNASKVLFTTRYKEVC-GK-M---EAHKKLRVECLTADEAWMLFNVKVG-------ED-TIDKIFVKCCCHT 344 (347)
Q Consensus 286 ~~gs~iiiTtR~~~v~-~~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~-------~~-~~~~I~~~~~G~P 344 (347)
..+..||.||...... .. . .....+.++..+.++-.+++...+. .+ ....+.+.+.|.+
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~ 214 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFS 214 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCC
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCC
Confidence 2355677777665421 11 1 1234678999999999999987652 11 2467777777764
No 30
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.67 E-value=9.7e-08 Score=92.06 Aligned_cols=173 Identities=13% Similarity=0.085 Sum_probs=101.6
Q ss_pred CcccchhhhHHHHHHHhhcc-----------------CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecC
Q 038882 157 PRIIGQESIFDDVWRCIIEE-----------------QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSK 219 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~-----------------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 219 (347)
..++|++..++.|.+++... ..+.+.|+|++|+|||+||+.+++.. . + .++.++++.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l---~--~-~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL---G--Y-DILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT---T--C-EEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc---C--C-CEEEEeCCC
Confidence 46899999999999998751 34789999999999999999998875 1 2 234455544
Q ss_pred CCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHH--hcCCcEEEEEeCCCCccc-----ccccccCCCCCCCCcEEE
Q 038882 220 DLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKI--LSNKKFVLLLDDVWEPVD-----LTKVGVPIPNSTNASKVL 292 (347)
Q Consensus 220 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~--l~~kr~LlVlDdv~~~~~-----~~~l~~~l~~~~~gs~ii 292 (347)
..... ++...+....... +.........+. ..+++.+|+||+++.... +..+...+. . .+..||
T Consensus 113 ~~~~~-~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~-~-~~~~iI 183 (516)
T 1sxj_A 113 VRSKT-LLNAGVKNALDNM------SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR-K-TSTPLI 183 (516)
T ss_dssp CCCHH-HHHHTGGGGTTBC------CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH-H-CSSCEE
T ss_pred cchHH-HHHHHHHHHhccc------cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH-h-cCCCEE
Confidence 43332 2333222221100 000000000001 235789999999965421 122221111 1 233455
Q ss_pred EecCChh---HHhhcCCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 293 FTTRYKE---VCGKMEAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 293 iTtR~~~---v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
+++.... +.........+.+++++.++..+++...+ .++.+..|++.++|.+
T Consensus 184 li~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~Gdi 245 (516)
T 1sxj_A 184 LICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDI 245 (516)
T ss_dssp EEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCH
T ss_pred EEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcH
Confidence 5554332 22222223478999999999999887654 3567889999998854
No 31
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.66 E-value=1.2e-06 Score=79.12 Aligned_cols=164 Identities=16% Similarity=0.144 Sum_probs=97.1
Q ss_pred CcccchhhhHHHHHHHhhc------------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChH
Q 038882 157 PRIIGQESIFDDVWRCIIE------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLE 224 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 224 (347)
.+++|.++.++.|.+.+.. ...+-+.++|++|+|||+||+.+++.. . .. ..+.++.+.-.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~-~-~~---~~~~i~~~~l~~-- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA-N-NS---TFFSISSSDLVS-- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT-T-SC---EEEEEECCSSCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc-C-CC---cEEEEEhHHHHh--
Confidence 5689999888888776632 134678999999999999999999864 1 11 223333332110
Q ss_pred HHHHHHHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCccc-------------ccccccC---CCCCCCC
Q 038882 225 KVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPVD-------------LTKVGVP---IPNSTNA 288 (347)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------------~~~l~~~---l~~~~~g 288 (347)
.............+...-..++.+|+||+++.... ...+... +.....+
T Consensus 85 ---------------~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 85 ---------------KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp ---------------SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred ---------------hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC
Confidence 00111222222222223346789999999975410 0111111 1112344
Q ss_pred cEEEEecCChhH-----HhhcCCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 289 SKVLFTTRYKEV-----CGKMEAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 289 s~iiiTtR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
..||.||..... .. .....+.++..+.++-.+++...+ .+..+..|++.+.|..
T Consensus 150 v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~s 215 (322)
T 1xwi_A 150 ILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYS 215 (322)
T ss_dssp EEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCC
T ss_pred EEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCC
Confidence 556666755432 22 233567889999999999988765 2456788888888863
No 32
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.65 E-value=6e-07 Score=81.58 Aligned_cols=157 Identities=16% Similarity=0.111 Sum_probs=94.6
Q ss_pred CcccchhhhHHHHHHHhhc-----cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHH
Q 038882 157 PRIIGQESIFDDVWRCIIE-----EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIG 231 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 231 (347)
..++|++..++.+..++.. .....+.|+|++|+|||+||+.+++.. ...| +.++++....... +..++
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~-~~~~~ 101 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM---SANI---KTTAAPMIEKSGD-LAAIL 101 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT---TCCE---EEEEGGGCCSHHH-HHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCe---EEecchhccchhH-HHHHH
Confidence 5689999999999888864 344678999999999999999998765 2222 2333322211111 11111
Q ss_pred HhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCcc--cccccccCC------------------CCCCCCcEE
Q 038882 232 KKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPV--DLTKVGVPI------------------PNSTNASKV 291 (347)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~l~~~l------------------~~~~~gs~i 291 (347)
.. ..+..+|+||+++... ....+...+ ....++..+
T Consensus 102 ~~------------------------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 102 TN------------------------LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp HT------------------------CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred Hh------------------------ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 11 2355678888876431 111111000 001113566
Q ss_pred EEecCChhHH-hh-c-CCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 292 LFTTRYKEVC-GK-M-EAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 292 iiTtR~~~v~-~~-~-~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
|.+|...... .. . .....+.+++++.++...++.+.+ .++....|.+.+.|+|
T Consensus 158 i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~ 220 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTP 220 (338)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCH
T ss_pred EEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCH
Confidence 6666653321 11 1 123578999999999999998764 3567788888888887
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.65 E-value=1e-07 Score=85.58 Aligned_cols=150 Identities=14% Similarity=0.174 Sum_probs=85.3
Q ss_pred cccchhhhHHHHHHHhh---------------ccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCC
Q 038882 158 RIIGQESIFDDVWRCII---------------EEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLN 222 (347)
Q Consensus 158 ~~vGR~~~~~~l~~~L~---------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 222 (347)
.++|.+..++.|.+.+. ......+.|+|++|+|||+||+.+++.. ..........++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l-~~~~~~~~~~~~~~~~~-- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL-HRLGYVRKGHLVSVTRD-- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHH-HHTTSSSSCCEEEECGG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH-HhcCCcCCCcEEEEcHH--
Confidence 57899888888876654 2234578999999999999999988876 32222211122223211
Q ss_pred hHHHHHHHHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCc-----------ccccccccCCCCCCCCcEE
Q 038882 223 LEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEP-----------VDLTKVGVPIPNSTNASKV 291 (347)
Q Consensus 223 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~i 291 (347)
. +.. .............+... +..+|+||+++.. .....+...+.....+..+
T Consensus 109 --~--------l~~---~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~ 172 (309)
T 3syl_A 109 --D--------LVG---QYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVV 172 (309)
T ss_dssp --G--------TCC---SSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEE
T ss_pred --H--------hhh---hcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEE
Confidence 0 100 00011111112222222 4569999999733 1122333333333456678
Q ss_pred EEecCChhH----------HhhcCCCceeecCCCCHHHHHHHHhhhh
Q 038882 292 LFTTRYKEV----------CGKMEAHKKLRVECLTADEAWMLFNVKV 328 (347)
Q Consensus 292 iiTtR~~~v----------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 328 (347)
|+||..... ...+ ...+.+++++.++-.+++...+
T Consensus 173 i~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l 217 (309)
T 3syl_A 173 ILAGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEELFEIAGHML 217 (309)
T ss_dssp EEEECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHHHHHHHHHHH
T ss_pred EEeCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHHHHHHHHHHH
Confidence 888764322 2221 2578999999999999997765
No 34
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.65 E-value=1.3e-07 Score=87.05 Aligned_cols=180 Identities=13% Similarity=0.115 Sum_probs=97.3
Q ss_pred CcccchhhhHHH---HHHHhhccC--ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEe----cCCCChHHHH
Q 038882 157 PRIIGQESIFDD---VWRCIIEEQ--VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVV----SKDLNLEKVQ 227 (347)
Q Consensus 157 ~~~vGR~~~~~~---l~~~L~~~~--~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v----s~~~~~~~~~ 227 (347)
..|+|++...+. +.+.+.... .+.+.|+|++|+|||+||+.+++.. .....| +.+.. +........+
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-~~~~~~---~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL-GPDTPF---TAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH-CSSCCE---EEEEGGGGSCSSSCHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh-cccCCc---ccccchhhhhcccchhHHH
Confidence 578999988666 444454443 3589999999999999999999887 211122 22222 2223344444
Q ss_pred HHHHHhcCCC---------------------C-------ccccccChHHHHHHHHHHh-----cCC----cEEEEEeCCC
Q 038882 228 EDIGKKIDLF---------------------S-------ESWKNKSLVEKSCAIFKIL-----SNK----KFVLLLDDVW 270 (347)
Q Consensus 228 ~~i~~~l~~~---------------------~-------~~~~~~~~~~~~~~l~~~l-----~~k----r~LlVlDdv~ 270 (347)
.+.+...... . ..............+.... .++ +.+|+||+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 4443331100 0 0000000122222222221 233 4699999996
Q ss_pred Cc--ccccccccCCCCCCCCcEEEEecCC-----------------hhHHhhcCCCceeecCCCCHHHHHHHHhhhh---
Q 038882 271 EP--VDLTKVGVPIPNSTNASKVLFTTRY-----------------KEVCGKMEAHKKLRVECLTADEAWMLFNVKV--- 328 (347)
Q Consensus 271 ~~--~~~~~l~~~l~~~~~gs~iiiTtR~-----------------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~--- 328 (347)
.. .....+...+...... .++++|.. +.+...+ ..+.+++++.++..+++.+.+
T Consensus 200 ~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~---~~i~~~~~~~~e~~~il~~~~~~~ 275 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL---LIVSTTPYSEKDTKQILRIRCEEE 275 (368)
T ss_dssp GSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE---EEEEECCCCHHHHHHHHHHHHHHT
T ss_pred ccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhc---cEEEecCCCHHHHHHHHHHHHHHc
Confidence 64 2222332223222222 34444431 1222222 357999999999999998664
Q ss_pred ----ChhhHHHHHHHhC-Ccc
Q 038882 329 ----GEDTIDKIFVKCC-CHT 344 (347)
Q Consensus 329 ----~~~~~~~I~~~~~-G~P 344 (347)
.++.+..|++.+. |.|
T Consensus 276 ~~~~~~~~l~~l~~~~~~G~~ 296 (368)
T 3uk6_A 276 DVEMSEDAYTVLTRIGLETSL 296 (368)
T ss_dssp TCCBCHHHHHHHHHHHHHSCH
T ss_pred CCCCCHHHHHHHHHHhcCCCH
Confidence 3567788888887 665
No 35
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.63 E-value=4.9e-07 Score=82.21 Aligned_cols=174 Identities=9% Similarity=-0.009 Sum_probs=100.2
Q ss_pred hhhHHHHHHHhhccCc-eEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCC----
Q 038882 163 ESIFDDVWRCIIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLF---- 237 (347)
Q Consensus 163 ~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~---- 237 (347)
++..+.+.+.+..+.. ..+.++|++|+|||++|+.+.... .....-+ ...+......+.+...-...
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l-~~~~~~~-------~~~c~~c~~c~~~~~~~~~d~~~~ 79 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYL-LCQQPQG-------HKSCGHCRGCQLMQAGTHPDYYTL 79 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHH-TCSSCBT-------TBCCSCSHHHHHHHHTCCTTEEEE
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHH-hCCCCCC-------CCCCCCCHHHHHHhcCCCCCEEEE
Confidence 4566777777776653 468999999999999999999876 2111100 00011111122221111000
Q ss_pred Ccc--ccccChHHHHHHHHHHh-----cCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCChh-HHhh-cCC
Q 038882 238 SES--WKNKSLVEKSCAIFKIL-----SNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRYKE-VCGK-MEA 306 (347)
Q Consensus 238 ~~~--~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~~-v~~~-~~~ 306 (347)
... ......++.. .+.+.+ .+++-++|+|+++.. ...+.++..+.....++.+|++|.+.. +... ...
T Consensus 80 ~~~~~~~~~~i~~ir-~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SR 158 (334)
T 1a5t_A 80 APEKGKNTLGVDAVR-EVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSR 158 (334)
T ss_dssp CCCTTCSSBCHHHHH-HHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTT
T ss_pred eccccCCCCCHHHHH-HHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhc
Confidence 000 0111222222 233332 246789999999765 223344444443445677777777653 2211 122
Q ss_pred CceeecCCCCHHHHHHHHhhhh--ChhhHHHHHHHhCCccc
Q 038882 307 HKKLRVECLTADEAWMLFNVKV--GEDTIDKIFVKCCCHTF 345 (347)
Q Consensus 307 ~~~~~l~~L~~~ea~~Lf~~~~--~~~~~~~I~~~~~G~PL 345 (347)
...+.+.+++.++..+++.+.. .++.+..+++.++|.|.
T Consensus 159 c~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~l~~~s~G~~r 199 (334)
T 1a5t_A 159 CRLHYLAPPPEQYAVTWLSREVTMSQDALLAALRLSAGSPG 199 (334)
T ss_dssp SEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHH
T ss_pred ceeeeCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHcCCCHH
Confidence 3478999999999999998875 45667889999999874
No 36
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.63 E-value=8.9e-08 Score=86.62 Aligned_cols=160 Identities=11% Similarity=0.083 Sum_probs=97.3
Q ss_pred CcccchhhhHHHHHHHhhccCc-eEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQV-GIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
..++|.++.++.|.+++..+.. .++.+.|++|+|||++|+.+++.. . ...+.++.+.. .. +.++..+....
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l---~---~~~~~i~~~~~-~~-~~i~~~~~~~~ 97 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---N---ADMMFVNGSDC-KI-DFVRGPLTNFA 97 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT---T---EEEEEEETTTC-CH-HHHHTHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---C---CCEEEEccccc-CH-HHHHHHHHHHH
Confidence 5689999999999999987643 567788889999999999998875 1 12344443331 22 22222111110
Q ss_pred CCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCcc---cccccccCCCCCCCCcEEEEecCChh-----HHhhcCCC
Q 038882 236 LFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPV---DLTKVGVPIPNSTNASKVLFTTRYKE-----VCGKMEAH 307 (347)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---~~~~l~~~l~~~~~gs~iiiTtR~~~-----v~~~~~~~ 307 (347)
... ...+++.+|+|||++... ....+...+.....+.++|+||.... +.+.+
T Consensus 98 ~~~-----------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~--- 157 (324)
T 3u61_B 98 SAA-----------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC--- 157 (324)
T ss_dssp HBC-----------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS---
T ss_pred hhc-----------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC---
Confidence 000 012378899999997753 22333222222234567888887654 12222
Q ss_pred ceeecCCCCHHHHHHHHhh-------hh-------Ch-hhHHHHHHHhCCcc
Q 038882 308 KKLRVECLTADEAWMLFNV-------KV-------GE-DTIDKIFVKCCCHT 344 (347)
Q Consensus 308 ~~~~l~~L~~~ea~~Lf~~-------~~-------~~-~~~~~I~~~~~G~P 344 (347)
..+.+++++.++-.+++.. .+ .+ +.+..|++.++|.+
T Consensus 158 ~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~ 209 (324)
T 3u61_B 158 RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDF 209 (324)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCT
T ss_pred cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCH
Confidence 4789999998884333222 11 24 77888999998875
No 37
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.62 E-value=3.3e-07 Score=82.86 Aligned_cols=161 Identities=18% Similarity=0.164 Sum_probs=97.4
Q ss_pred CcccchhhhHHHHHHHhhc------------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChH
Q 038882 157 PRIIGQESIFDDVWRCIIE------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLE 224 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 224 (347)
..++|.+..++.|.+.+.. ...+-+.++|++|+|||+||+.+++.. ...| +.++.+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~---~~v~~~------ 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTF---FSVSSS------ 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCEE---EEEEHH------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCCE---EEEchH------
Confidence 5689999999999887731 124578999999999999999999876 2222 233221
Q ss_pred HHHHHHHHhcCCCCccccccChHHHHHHH-HHHhcCCcEEEEEeCCCCccc-------------ccccccC---CCCCCC
Q 038882 225 KVQEDIGKKIDLFSESWKNKSLVEKSCAI-FKILSNKKFVLLLDDVWEPVD-------------LTKVGVP---IPNSTN 287 (347)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l-~~~l~~kr~LlVlDdv~~~~~-------------~~~l~~~---l~~~~~ 287 (347)
+ +..... .. .......+ ...-..++.+|+||+++.... ...+... +.....
T Consensus 86 ~----l~~~~~-------g~-~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 86 D----LVSKWM-------GE-SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp H----HHTTTG-------GG-HHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred H----Hhhccc-------ch-HHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 1 111110 11 11222222 223345778999999965311 1112111 112334
Q ss_pred CcEEEEecCChhH-----HhhcCCCceeecCCCCHHHHHHHHhhhhC-------hhhHHHHHHHhCCc
Q 038882 288 ASKVLFTTRYKEV-----CGKMEAHKKLRVECLTADEAWMLFNVKVG-------EDTIDKIFVKCCCH 343 (347)
Q Consensus 288 gs~iiiTtR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~-------~~~~~~I~~~~~G~ 343 (347)
+..||.||..... .. .....+.++..+.++-.+++...+. +.....|++.+.|.
T Consensus 154 ~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~ 219 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGY 219 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTC
T ss_pred ceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCC
Confidence 5666667776432 22 2234678888999999999988653 45677888888774
No 38
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.59 E-value=2e-07 Score=84.99 Aligned_cols=163 Identities=14% Similarity=0.201 Sum_probs=97.7
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCC-EEEEEEecCCCChHHHHHHHHHhcC
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFD-IVIWVVVSKDLNLEKVQEDIGKKID 235 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~i~~~l~ 235 (347)
..++|.+..++.|...+..+..+.+.++|++|+||||+|+.+++.. .. ..+. .+..++.+......
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l-~~-~~~~~~~~~~~~~~~~~~~----------- 91 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI-YG-KNYSNMVLELNASDDRGID----------- 91 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH-HT-TSHHHHEEEECTTSCCSHH-----------
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH-cC-CCccceEEEEcCcccccHH-----------
Confidence 4568999999999888888765558999999999999999999876 21 1111 11222222211111
Q ss_pred CCCccccccChHHHHHHHHHHh------cCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCChh-HHhh-cC
Q 038882 236 LFSESWKNKSLVEKSCAIFKIL------SNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRYKE-VCGK-ME 305 (347)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~l------~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~~-v~~~-~~ 305 (347)
.....+.... .+.+-++|+|+++.. ...+.+...+......+++|++|.... +... ..
T Consensus 92 ------------~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~s 159 (340)
T 1sxj_C 92 ------------VVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLS 159 (340)
T ss_dssp ------------HHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred ------------HHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHh
Confidence 1111121111 234678999998653 222333222222234567777775543 1111 11
Q ss_pred CCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 306 AHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 306 ~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
....+.+.+++.++..+.+.+.+ .++....|+..++|.+
T Consensus 160 R~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~ 205 (340)
T 1sxj_C 160 QCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDM 205 (340)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCH
T ss_pred hceeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 12468999999999888887654 2556778888888864
No 39
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.56 E-value=9.5e-07 Score=81.05 Aligned_cols=163 Identities=17% Similarity=0.132 Sum_probs=95.9
Q ss_pred CcccchhhhHHHHHHHhhc------------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChH
Q 038882 157 PRIIGQESIFDDVWRCIIE------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLE 224 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 224 (347)
..++|.+..++.|.+.+.. ...+.+.|+|++|+|||+||+.+++.. .. ..+.++++.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~---~~~~i~~~~l~~-- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GA---TFFSISASSLTS-- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TC---EEEEEEGGGGCC--
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CC---eEEEEehHHhhc--
Confidence 4689999999999887742 245688999999999999999998865 22 223444432111
Q ss_pred HHHHHHHHhcCCCCccccccChHHHHHHHHH-HhcCCcEEEEEeCCCCcc-------------cccccccCCC----CCC
Q 038882 225 KVQEDIGKKIDLFSESWKNKSLVEKSCAIFK-ILSNKKFVLLLDDVWEPV-------------DLTKVGVPIP----NST 286 (347)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~-------------~~~~l~~~l~----~~~ 286 (347)
. .... .......+.. .-..++.+|+||+++... ....+...+. ...
T Consensus 156 -----------~----~~g~-~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 219 (357)
T 3d8b_A 156 -----------K----WVGE-GEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSE 219 (357)
T ss_dssp -----------S----STTH-HHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CC
T ss_pred -----------c----ccch-HHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCC
Confidence 0 0000 1111222222 224578999999994321 0112211111 112
Q ss_pred CCcEEEEecCChhHH-hh-c-CCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCc
Q 038882 287 NASKVLFTTRYKEVC-GK-M-EAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCH 343 (347)
Q Consensus 287 ~gs~iiiTtR~~~v~-~~-~-~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~ 343 (347)
.+..||.||...... .. . .....+.+...+.++..+++...+ .++.+..|++.+.|.
T Consensus 220 ~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~ 286 (357)
T 3d8b_A 220 DRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAF 286 (357)
T ss_dssp CCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTC
T ss_pred CCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCC
Confidence 345566677654321 11 1 223467888899999888887654 356678888888884
No 40
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.55 E-value=3.9e-06 Score=79.24 Aligned_cols=166 Identities=16% Similarity=0.154 Sum_probs=96.7
Q ss_pred CcccchhhhHHHHHHHhhc------------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChH
Q 038882 157 PRIIGQESIFDDVWRCIIE------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLE 224 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 224 (347)
..++|.+..++.|.+.+.. ...+.+.|+|++|+|||+||+.+++.. . .. .++.++..
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~-~-~~-----~~~~v~~~---- 202 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA-N-NS-----TFFSISSS---- 202 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC-C-SS-----EEEEECCC----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc-C-CC-----CEEEEeHH----
Confidence 5689999999888887631 234678999999999999999999864 1 11 22333222
Q ss_pred HHHHHHHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCccc-------------ccccccCCCC---CCCC
Q 038882 225 KVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPVD-------------LTKVGVPIPN---STNA 288 (347)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------------~~~l~~~l~~---~~~g 288 (347)
.+.... .+. .... ....+...-..++.+|+||+++.... ...+...+.. ...+
T Consensus 203 ~l~~~~---~g~-----~~~~---~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 271 (444)
T 2zan_A 203 DLVSKW---LGE-----SEKL---VKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 271 (444)
T ss_dssp -----------------CCCT---HHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred HHHhhh---cch-----HHHH---HHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCC
Confidence 111110 111 0111 11222222245789999999975410 1112222221 2345
Q ss_pred cEEEEecCChhHHh--hc-CCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 289 SKVLFTTRYKEVCG--KM-EAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 289 s~iiiTtR~~~v~~--~~-~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
..||.||....... .. .....+.++..+.++-..+|...+ .+..+..|++.+.|..
T Consensus 272 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~s 337 (444)
T 2zan_A 272 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYS 337 (444)
T ss_dssp CEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCC
T ss_pred EEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCC
Confidence 66777776653211 01 223467888888999888888765 2456788999988853
No 41
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.54 E-value=9.2e-07 Score=81.48 Aligned_cols=164 Identities=12% Similarity=0.120 Sum_probs=97.2
Q ss_pred CcccchhhhHHHHHHHhhc-------------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCCh
Q 038882 157 PRIIGQESIFDDVWRCIIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNL 223 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 223 (347)
.++.|-++.++.|.+.+.- ...+-+.++|++|+|||.||+.+++.. ..+| +.++.+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f---~~v~~s~l~s- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT---DCKF---IRVSGAELVQ- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCEE---EEEEGGGGSC-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCCc---eEEEhHHhhc-
Confidence 4578888888887766542 135678899999999999999999987 3333 3333332110
Q ss_pred HHHHHHHHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCccc----------------ccccccCCC--CC
Q 038882 224 EKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPVD----------------LTKVGVPIP--NS 285 (347)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----------------~~~l~~~l~--~~ 285 (347)
.+...+...+...+...-+..+++|++|+++.... ...++..+. ..
T Consensus 221 ----------------k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 284 (405)
T 4b4t_J 221 ----------------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET 284 (405)
T ss_dssp ----------------SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC
T ss_pred ----------------cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC
Confidence 01111122222222223346789999999975410 111111111 12
Q ss_pred CCCcEEEEecCChhHH-----hhcCCCceeecCCCCHHHHHHHHhhhhC------hhhHHHHHHHhCCc
Q 038882 286 TNASKVLFTTRYKEVC-----GKMEAHKKLRVECLTADEAWMLFNVKVG------EDTIDKIFVKCCCH 343 (347)
Q Consensus 286 ~~gs~iiiTtR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~~~------~~~~~~I~~~~~G~ 343 (347)
..+..||.||...+.. ..-.-...+.++.-+.++-.++|+.... +-.+..|++.+.|.
T Consensus 285 ~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~ 353 (405)
T 4b4t_J 285 SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGC 353 (405)
T ss_dssp CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSC
T ss_pred CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCC
Confidence 3445567777765432 1112345788988898888888876652 22478888888875
No 42
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.53 E-value=1.5e-06 Score=80.68 Aligned_cols=165 Identities=13% Similarity=0.099 Sum_probs=94.2
Q ss_pred CcccchhhhHHHHHHHhhc------------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChH
Q 038882 157 PRIIGQESIFDDVWRCIIE------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLE 224 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 224 (347)
..++|.+..++.|.+++.. ...+.+.|+|++|+|||+||+.+++.. .. ..+.++++.-..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~---~~~~v~~~~l~~-- 186 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NA---TFFNISAASLTS-- 186 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEECSCCC----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cC---cEEEeeHHHhhc--
Confidence 5689999999999888732 134688999999999999999998765 22 223333322111
Q ss_pred HHHHHHHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCcc--------c-----ccccccCC---C-CCCC
Q 038882 225 KVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPV--------D-----LTKVGVPI---P-NSTN 287 (347)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~-----~~~l~~~l---~-~~~~ 287 (347)
. ............+...-...+.+|+||+++... . ...+...+ . ....
T Consensus 187 ~---------------~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 251 (389)
T 3vfd_A 187 K---------------YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDD 251 (389)
T ss_dssp --------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----
T ss_pred c---------------ccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCC
Confidence 0 001111112222222224467899999996430 0 01111111 1 1123
Q ss_pred CcEEEEecCChhHH-h-hc-CCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 288 ASKVLFTTRYKEVC-G-KM-EAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 288 gs~iiiTtR~~~v~-~-~~-~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
...||.||...... . .. .....+.+...+.++..+++...+ .++.+..|++.+.|..
T Consensus 252 ~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~ 318 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYS 318 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCC
T ss_pred CEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCC
Confidence 34566667653321 1 11 222467889999999999988764 2556778888888753
No 43
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.53 E-value=2e-06 Score=76.56 Aligned_cols=162 Identities=14% Similarity=0.119 Sum_probs=95.4
Q ss_pred CcccchhhhHHHHHHHhhc------------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChH
Q 038882 157 PRIIGQESIFDDVWRCIIE------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLE 224 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 224 (347)
..++|.+..++.|.+++.. ...+.+.|+|++|+|||+||+.+++.. ... .+.++++....
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~~---~~~i~~~~l~~-- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SAT---FLNISAASLTS-- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TCE---EEEEESTTTSS--
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCC---eEEeeHHHHhh--
Confidence 5689999999999887743 135688999999999999999998875 222 23333322110
Q ss_pred HHHHHHHHhcCCCCccccccChHHHHHH-HHHHhcCCcEEEEEeCCCCcccc-------------cccc---cCCCCC--
Q 038882 225 KVQEDIGKKIDLFSESWKNKSLVEKSCA-IFKILSNKKFVLLLDDVWEPVDL-------------TKVG---VPIPNS-- 285 (347)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~-l~~~l~~kr~LlVlDdv~~~~~~-------------~~l~---~~l~~~-- 285 (347)
. ... ........ +......++.+|+||+++....- ..+. ..++..
T Consensus 93 -----------~----~~~-~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 93 -----------K----YVG-DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp -----------S----SCS-CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred -----------c----ccc-hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 0 001 11222222 22233457899999999653110 0111 111111
Q ss_pred CCCcEEEEecCChh-----HHhhcCCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCcc
Q 038882 286 TNASKVLFTTRYKE-----VCGKMEAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCHT 344 (347)
Q Consensus 286 ~~gs~iiiTtR~~~-----v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~P 344 (347)
+.+..||.||.... +... ....+.++..+.++...++...+ .++.+..|++.+.|.+
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~ 225 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYS 225 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCC
T ss_pred CCcEEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCC
Confidence 23456677777643 2222 23467778888888888876653 2456788888888875
No 44
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.53 E-value=1.2e-06 Score=78.30 Aligned_cols=165 Identities=12% Similarity=0.091 Sum_probs=97.5
Q ss_pred CcccchhhhHHHHHHHhhc-------------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCCh
Q 038882 157 PRIIGQESIFDDVWRCIIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNL 223 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 223 (347)
..++|.+..++.|.+++.. ...+.+.|+|++|+|||+||+.+++.. ... .+.++ .
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~---~i~v~------~ 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN---FISIK------G 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCE---EEEEC------H
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh---CCC---EEEEE------h
Confidence 5689999888888877643 245678999999999999999999876 222 22222 2
Q ss_pred HHHHHHHHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCcc------------c----ccccccCCC--CC
Q 038882 224 EKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPV------------D----LTKVGVPIP--NS 285 (347)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------~----~~~l~~~l~--~~ 285 (347)
.++..... +. ........+.......+.+|+||+++... . ...+...+. ..
T Consensus 83 ~~l~~~~~---g~--------~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 83 PELLTMWF---GE--------SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp HHHHHHHH---TT--------CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred HHHHhhhc---Cc--------hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 23332221 11 11122233333345678999999996421 0 111211111 12
Q ss_pred CCCcEEEEecCChhHHh--hcC---CCceeecCCCCHHHHHHHHhhhhC------hhhHHHHHHHhCCcc
Q 038882 286 TNASKVLFTTRYKEVCG--KME---AHKKLRVECLTADEAWMLFNVKVG------EDTIDKIFVKCCCHT 344 (347)
Q Consensus 286 ~~gs~iiiTtR~~~v~~--~~~---~~~~~~l~~L~~~ea~~Lf~~~~~------~~~~~~I~~~~~G~P 344 (347)
..+..||.||....... .+. ....+.++..+.++-.+++...+. +.....++..+.|.|
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~s 221 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFS 221 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCC
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCC
Confidence 34567777887654321 122 234688999999998888877653 223556666666654
No 45
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.52 E-value=3.3e-07 Score=82.90 Aligned_cols=164 Identities=16% Similarity=0.232 Sum_probs=92.4
Q ss_pred Cccc-chhh--hHHHHHHHhhcc--CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHH
Q 038882 157 PRII-GQES--IFDDVWRCIIEE--QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIG 231 (347)
Q Consensus 157 ~~~v-GR~~--~~~~l~~~L~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 231 (347)
+.|+ |... ....+..+...+ ....+.|+|++|+||||||+.+++.. ... . ..++++++ ..+...+.
T Consensus 11 ~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~-~~~-~-~~~~~i~~------~~~~~~~~ 81 (324)
T 1l8q_A 11 ENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEA-KKR-G-YRVIYSSA------DDFAQAMV 81 (324)
T ss_dssp SSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHH-HHT-T-CCEEEEEH------HHHHHHHH
T ss_pred ccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHH-HHC-C-CEEEEEEH------HHHHHHHH
Confidence 3444 5433 234444444443 34689999999999999999999876 221 1 23345543 23333333
Q ss_pred HhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCccc----ccccccCCCC-CCCCcEEEEecCChh-------
Q 038882 232 KKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPVD----LTKVGVPIPN-STNASKVLFTTRYKE------- 299 (347)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----~~~l~~~l~~-~~~gs~iiiTtR~~~------- 299 (347)
..+.. ... ..+...+. ++.+|+|||+..... ...+...+.. ...+..||+||.+..
T Consensus 82 ~~~~~-------~~~----~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~ 149 (324)
T 1l8q_A 82 EHLKK-------GTI----NEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVS 149 (324)
T ss_dssp HHHHH-------TCH----HHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSC
T ss_pred HHHHc-------CcH----HHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhh
Confidence 33211 011 11222222 367999999965431 1222222110 123567888776431
Q ss_pred --HHhhcCCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCc
Q 038882 300 --VCGKMEAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCH 343 (347)
Q Consensus 300 --v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~ 343 (347)
+...+.....+.+++ +.++..+++...+ .++....|++.+ |+
T Consensus 150 ~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~ 200 (324)
T 1l8q_A 150 DRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KN 200 (324)
T ss_dssp HHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SS
T ss_pred hHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CC
Confidence 223333335789999 9999999998765 256677777777 65
No 46
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.51 E-value=1.9e-06 Score=78.96 Aligned_cols=162 Identities=17% Similarity=0.134 Sum_probs=96.6
Q ss_pred CcccchhhhHHHHHHHhhc------------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChH
Q 038882 157 PRIIGQESIFDDVWRCIIE------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLE 224 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 224 (347)
..++|.+..++.|.+.+.. ...+-+.|+|++|+|||+||+.+++.. ... .+.++.+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~---~~~v~~~------ 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSS------ 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCE---EEEEEHH------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCC---EEEeeHH------
Confidence 5689999999999887732 123468899999999999999999876 222 2223222
Q ss_pred HHHHHHHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCccc-------------ccccccCC---CCCCCC
Q 038882 225 KVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPVD-------------LTKVGVPI---PNSTNA 288 (347)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------------~~~l~~~l---~~~~~g 288 (347)
+ +..... ..........+...-..++.+|+||+++.... ...+...+ .....+
T Consensus 119 ~----l~~~~~-------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 119 D----LVSKWM-------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp H----HHSCC----------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred H----Hhhhhc-------chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 1 111110 11122222222223345789999999975321 11121111 112345
Q ss_pred cEEEEecCChh-----HHhhcCCCceeecCCCCHHHHHHHHhhhh-------ChhhHHHHHHHhCCc
Q 038882 289 SKVLFTTRYKE-----VCGKMEAHKKLRVECLTADEAWMLFNVKV-------GEDTIDKIFVKCCCH 343 (347)
Q Consensus 289 s~iiiTtR~~~-----v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~ 343 (347)
..||.||.... +.. .....+.++..+.++-.+++...+ .+..+..|++.+.|.
T Consensus 188 v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~ 252 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGY 252 (355)
T ss_dssp EEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTC
T ss_pred eEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCC
Confidence 56666776553 222 233567889999999999988765 245678899998885
No 47
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.49 E-value=4.1e-07 Score=74.72 Aligned_cols=46 Identities=24% Similarity=0.350 Sum_probs=41.7
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..++||+.+++.+.+.+.....+.+.|+|++|+|||+||+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988767788999999999999999999876
No 48
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.47 E-value=1.1e-06 Score=83.55 Aligned_cols=148 Identities=15% Similarity=0.146 Sum_probs=81.9
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccC--CCC-C-EEEEEEecCCCChHHHHHHHHH
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHER--HDF-D-IVIWVVVSKDLNLEKVQEDIGK 232 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~~f-~-~~~wv~vs~~~~~~~~~~~i~~ 232 (347)
+.++||+.+++.+...|......-+.|+|++|+|||+||+.++....... ... + ..+.++++ .
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------------~ 246 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------------T 246 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------
T ss_pred CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-------------c
Confidence 45899999999999999876666778999999999999999998761111 001 1 11222222 0
Q ss_pred hcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCcccccccccCCCCCCCCcEEEEecCChhHHh-------hcC
Q 038882 233 KIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPVDLTKVGVPIPNSTNASKVLFTTRYKEVCG-------KME 305 (347)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~-------~~~ 305 (347)
.. ...........+...-..++.+|++| ........+...+. ....++|.+|....... ...
T Consensus 247 ~~-------~g~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~ 315 (468)
T 3pxg_A 247 KY-------RGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALER 315 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred cc-------cchHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHH
Confidence 00 00001112222333334578899999 22222222333332 22356666665443111 011
Q ss_pred CCceeecCCCCHHHHHHHHhhhh
Q 038882 306 AHKKLRVECLTADEAWMLFNVKV 328 (347)
Q Consensus 306 ~~~~~~l~~L~~~ea~~Lf~~~~ 328 (347)
....+.+++.+.++..+++....
T Consensus 316 Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 316 RFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp SEEEEECCCCCHHHHHHHHHHTT
T ss_pred hCccceeCCCCHHHHHHHHHHHH
Confidence 12368999999999999998654
No 49
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.46 E-value=1.4e-06 Score=81.41 Aligned_cols=164 Identities=15% Similarity=0.175 Sum_probs=95.7
Q ss_pred CcccchhhhHHHHHHHhhc-------------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCCh
Q 038882 157 PRIIGQESIFDDVWRCIIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNL 223 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 223 (347)
.++.|-++.++.|.+.+.- ...+-|.++|++|+|||+||+.+++.. ..+| +.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~~---~~v~~s~l~s- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GANF---IFSPASGIVD- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCEE---EEEEGGGTCC-
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEehhhhcc-
Confidence 4578888888777766542 145788999999999999999999987 3332 3333332110
Q ss_pred HHHHHHHHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCcc--------c--------ccccccCC--CCC
Q 038882 224 EKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPV--------D--------LTKVGVPI--PNS 285 (347)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~--------~~~l~~~l--~~~ 285 (347)
.+...+.......+...-...+++|++|+++... . +..++..+ ...
T Consensus 254 ----------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 317 (437)
T 4b4t_L 254 ----------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN 317 (437)
T ss_dssp ----------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC
T ss_pred ----------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC
Confidence 0111111222222222334689999999997531 0 11111111 122
Q ss_pred CCCcEEEEecCChhHHhh--cCC---CceeecCCCCHHHHHHHHhhhhC------hhhHHHHHHHhCCc
Q 038882 286 TNASKVLFTTRYKEVCGK--MEA---HKKLRVECLTADEAWMLFNVKVG------EDTIDKIFVKCCCH 343 (347)
Q Consensus 286 ~~gs~iiiTtR~~~v~~~--~~~---~~~~~l~~L~~~ea~~Lf~~~~~------~~~~~~I~~~~~G~ 343 (347)
..+..||.||...+.... +.. ...+.++.-+.++-.++|+.++. +-....|++.+.|.
T Consensus 318 ~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~ 386 (437)
T 4b4t_L 318 LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGF 386 (437)
T ss_dssp TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSC
T ss_pred CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCC
Confidence 345567778876654221 222 24678888888888888876542 23467788877774
No 50
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.45 E-value=7.3e-07 Score=91.12 Aligned_cols=168 Identities=14% Similarity=0.187 Sum_probs=91.3
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccC--CC--CCEEEEEEecCCCChHHHHHHHHH
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHER--HD--FDIVIWVVVSKDLNLEKVQEDIGK 232 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~~--f~~~~wv~vs~~~~~~~~~~~i~~ 232 (347)
..++||+++++.+++.|.......+.++|++|+|||+||+.+++...... .. -..+++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---------- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---------- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------------
T ss_pred cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----------
Confidence 45899999999999999887666788999999999999999998762111 11 11233443322100
Q ss_pred hcCCCCccccccChHHHHHHHHHHhc--CCcEEEEEeCCCCcc---c----cc---ccccCCCCCCCCcEEEEecCChhH
Q 038882 233 KIDLFSESWKNKSLVEKSCAIFKILS--NKKFVLLLDDVWEPV---D----LT---KVGVPIPNSTNASKVLFTTRYKEV 300 (347)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~---~----~~---~l~~~l~~~~~gs~iiiTtR~~~v 300 (347)
+. .. ..........+...+. +++.+|+||++.... . ++ .+...+. ..+..+|.+|.....
T Consensus 240 --g~---~~-~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~at~~~~~ 311 (854)
T 1qvr_A 240 --GA---KY-RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGATTLDEY 311 (854)
T ss_dssp ------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEEECHHHH
T ss_pred --cC---cc-chHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEecCchHH
Confidence 00 00 0112222233333332 368999999997542 0 11 1111111 123446655554332
Q ss_pred H-----hh-cCCCceeecCCCCHHHHHHHHhhhh-----------ChhhHHHHHHHhCC
Q 038882 301 C-----GK-MEAHKKLRVECLTADEAWMLFNVKV-----------GEDTIDKIFVKCCC 342 (347)
Q Consensus 301 ~-----~~-~~~~~~~~l~~L~~~ea~~Lf~~~~-----------~~~~~~~I~~~~~G 342 (347)
. .. ......+.+++++.++..+++.... .++.+..+++.+.|
T Consensus 312 ~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r 370 (854)
T 1qvr_A 312 REIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHR 370 (854)
T ss_dssp HHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHH
T ss_pred hhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhh
Confidence 1 11 1122358999999999999997432 24455556655533
No 51
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.44 E-value=7.2e-07 Score=79.90 Aligned_cols=147 Identities=11% Similarity=0.069 Sum_probs=90.5
Q ss_pred chhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccC-CCCCEEEEEEecC-CCChHHHHHHHHHhcCCCC
Q 038882 161 GQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHER-HDFDIVIWVVVSK-DLNLEKVQEDIGKKIDLFS 238 (347)
Q Consensus 161 GR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~ 238 (347)
|-++.++.|.+.+..+..+...++|++|+||||+|+.+.+...... .+.+. .++..+. .....+ .+++...+....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~-ir~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDD-IRTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHH-HHHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHH-HHHHHHHHhhcc
Confidence 4456677888888877778999999999999999999987531111 23333 4444332 222222 233443332110
Q ss_pred ccccccChHHHHHHHHHHhcCCcEEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCChh-HHhhcCCCceeecCCC
Q 038882 239 ESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRYKE-VCGKMEAHKKLRVECL 315 (347)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~~-v~~~~~~~~~~~l~~L 315 (347)
..+++-++|+|+++.. ...+.++..+......+.+|++|.+.. +...+... .+++.++
T Consensus 79 ------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l 139 (305)
T 2gno_A 79 ------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVN 139 (305)
T ss_dssp ------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECC
T ss_pred ------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCC
Confidence 1245779999999765 334445444444445777877775543 33333334 8999999
Q ss_pred CHHHHHHHHhhhh
Q 038882 316 TADEAWMLFNVKV 328 (347)
Q Consensus 316 ~~~ea~~Lf~~~~ 328 (347)
+.++..+.+.+.+
T Consensus 140 ~~~~i~~~L~~~~ 152 (305)
T 2gno_A 140 VPKEFRDLVKEKI 152 (305)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998775
No 52
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.38 E-value=4.8e-06 Score=77.83 Aligned_cols=164 Identities=15% Similarity=0.171 Sum_probs=95.8
Q ss_pred CcccchhhhHHHHHHHhhc-------------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCCh
Q 038882 157 PRIIGQESIFDDVWRCIIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNL 223 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 223 (347)
.++.|-++.++.|.+.+.- ...+-|.++|++|+|||.||+.+++.. ..+| +.++.+.-.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~f---i~vs~s~L~s- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT---DATF---IRVIGSELVQ- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCEE---EEEEGGGGCC-
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCCe---EEEEhHHhhc-
Confidence 3578888888888765432 246788999999999999999999987 3332 3333332110
Q ss_pred HHHHHHHHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCccc----------------ccccccCCC--CC
Q 038882 224 EKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPVD----------------LTKVGVPIP--NS 285 (347)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----------------~~~l~~~l~--~~ 285 (347)
.....+...+...+...-...+++|++|+++.... ...++..+. ..
T Consensus 282 ----------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 282 ----------------KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp ----------------CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred ----------------ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 01111122222222333346789999999975410 001111111 12
Q ss_pred CCCcEEEEecCChhHHh--hc---CCCceeecCCCCHHHHHHHHhhhhC------hhhHHHHHHHhCCc
Q 038882 286 TNASKVLFTTRYKEVCG--KM---EAHKKLRVECLTADEAWMLFNVKVG------EDTIDKIFVKCCCH 343 (347)
Q Consensus 286 ~~gs~iiiTtR~~~v~~--~~---~~~~~~~l~~L~~~ea~~Lf~~~~~------~~~~~~I~~~~~G~ 343 (347)
..+..||.||....... .+ .-...+.++..+.++-.++|+.++. +-....|++.|.|.
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~Gf 414 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNS 414 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSC
T ss_pred CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCC
Confidence 33445666776554311 11 2345788888888888888876653 22467788888775
No 53
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.37 E-value=3.3e-06 Score=75.44 Aligned_cols=46 Identities=28% Similarity=0.304 Sum_probs=38.6
Q ss_pred CcccchhhhHHHHHHHhhc--------------cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 157 PRIIGQESIFDDVWRCIIE--------------EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999887754 234678899999999999999999876
No 54
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.33 E-value=1.9e-06 Score=80.48 Aligned_cols=163 Identities=12% Similarity=0.172 Sum_probs=94.1
Q ss_pred CcccchhhhHHHHHHHhhc-------------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCCh
Q 038882 157 PRIIGQESIFDDVWRCIIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNL 223 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 223 (347)
.++.|-++.++.|.+.+.. ...+-|.++|++|+|||.||+.+++.. ..+| +.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~f---~~v~~s~l~~- 253 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT---NATF---LKLAAPQLVQ- 253 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCEE---EEEEGGGGCS-
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCCE---EEEehhhhhh-
Confidence 4578888888888776432 145678999999999999999999987 3332 3333322110
Q ss_pred HHHHHHHHHhcCCCCccccccChHHHHHHHHH-HhcCCcEEEEEeCCCCc-------cc---------ccccccCCC--C
Q 038882 224 EKVQEDIGKKIDLFSESWKNKSLVEKSCAIFK-ILSNKKFVLLLDDVWEP-------VD---------LTKVGVPIP--N 284 (347)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~-------~~---------~~~l~~~l~--~ 284 (347)
.+...+ ......+.. .-...+++|++|+++.. .. ...++..+. .
T Consensus 254 ----------------~~vGes-e~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~ 316 (434)
T 4b4t_M 254 ----------------MYIGEG-AKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS 316 (434)
T ss_dssp ----------------SCSSHH-HHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC
T ss_pred ----------------cccchH-HHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC
Confidence 001111 112222222 22347899999998532 00 111211121 1
Q ss_pred CCCCcEEEEecCChhHHhh--cCC---CceeecCCCCHHHHHHHHhhhhC------hhhHHHHHHHhCCc
Q 038882 285 STNASKVLFTTRYKEVCGK--MEA---HKKLRVECLTADEAWMLFNVKVG------EDTIDKIFVKCCCH 343 (347)
Q Consensus 285 ~~~gs~iiiTtR~~~v~~~--~~~---~~~~~l~~L~~~ea~~Lf~~~~~------~~~~~~I~~~~~G~ 343 (347)
...+-.||.||...+.... +.+ ...+.++..+.++-.++|+..+. +-....|++.+.|.
T Consensus 317 ~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~ 386 (434)
T 4b4t_M 317 SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEF 386 (434)
T ss_dssp SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSC
T ss_pred CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCC
Confidence 2234456667776553221 122 24678888888888888875542 22467888888775
No 55
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.32 E-value=2.5e-06 Score=79.62 Aligned_cols=164 Identities=16% Similarity=0.230 Sum_probs=90.5
Q ss_pred CcccchhhhHHHHHHHhhc-------------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCCh
Q 038882 157 PRIIGQESIFDDVWRCIIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNL 223 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 223 (347)
.++.|-++.++.|.+.+.- ...+-+.++|++|+|||+||+.+++.. ..+| +.++.+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~~---~~v~~~~l~~- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST---KAAF---IRVNGSEFVH- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH---TCEE---EEEEGGGTCC-
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCe---EEEecchhhc-
Confidence 4678888888888776542 135668999999999999999999987 3332 3333332110
Q ss_pred HHHHHHHHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCcc--------c--------ccccccCCC--CC
Q 038882 224 EKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPV--------D--------LTKVGVPIP--NS 285 (347)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~--------~~~l~~~l~--~~ 285 (347)
.....+...+...+...-...+++|++|+++... . ...++..+. ..
T Consensus 245 ----------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~ 308 (428)
T 4b4t_K 245 ----------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ 308 (428)
T ss_dssp ----------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS
T ss_pred ----------------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC
Confidence 0111112222222223334678999999985320 0 111111111 12
Q ss_pred CCCcEEEEecCChhHH--hhcCC---CceeecCCCCHHHH-HHHHhhhh------ChhhHHHHHHHhCCc
Q 038882 286 TNASKVLFTTRYKEVC--GKMEA---HKKLRVECLTADEA-WMLFNVKV------GEDTIDKIFVKCCCH 343 (347)
Q Consensus 286 ~~gs~iiiTtR~~~v~--~~~~~---~~~~~l~~L~~~ea-~~Lf~~~~------~~~~~~~I~~~~~G~ 343 (347)
..+..||.||...+.. ..+.+ ...+.++.+++.++ ..+|...+ .+-.+..|++.+.|.
T Consensus 309 ~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~ 378 (428)
T 4b4t_K 309 STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSL 378 (428)
T ss_dssp SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTC
T ss_pred CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCC
Confidence 3455677788765431 11222 23567766655444 44554433 123477888888775
No 56
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.31 E-value=6.7e-07 Score=70.97 Aligned_cols=45 Identities=27% Similarity=0.338 Sum_probs=36.0
Q ss_pred cccchhhhHHHHHHHhhc--cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 158 RIIGQESIFDDVWRCIIE--EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.++|+...+..+.+.+.. .....|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999999887754 334567899999999999999998764
No 57
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.30 E-value=2.8e-06 Score=80.95 Aligned_cols=164 Identities=13% Similarity=0.123 Sum_probs=97.1
Q ss_pred CcccchhhhHHHHHHHhhc-------------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCCh
Q 038882 157 PRIIGQESIFDDVWRCIIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNL 223 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 223 (347)
..++|.+..++.|.+++.. ....-+.|+|++|+|||+||+.+++.. ... .+.++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~~---fv~vn~~----- 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGP----- 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SSE---EEEEEHH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CCC---EEEEEch-----
Confidence 3589999999999887753 234578999999999999999998764 222 2333321
Q ss_pred HHHHHHHHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCcc-------------cccccccCCC--CCCCC
Q 038882 224 EKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPV-------------DLTKVGVPIP--NSTNA 288 (347)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------------~~~~l~~~l~--~~~~g 288 (347)
.+...+. ..........+.....+++.+|+||+++... ....++..+. ....+
T Consensus 273 -----~l~~~~~-------g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 273 -----EIMSKLA-------GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp -----HHHTSCT-------THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred -----Hhhhhhc-------chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence 1111111 1112223333444445678999999994321 0111211111 12334
Q ss_pred cEEEEecCChhH-Hhhc----CCCceeecCCCCHHHHHHHHhhhhC------hhhHHHHHHHhCCc
Q 038882 289 SKVLFTTRYKEV-CGKM----EAHKKLRVECLTADEAWMLFNVKVG------EDTIDKIFVKCCCH 343 (347)
Q Consensus 289 s~iiiTtR~~~v-~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~------~~~~~~I~~~~~G~ 343 (347)
..||.||..... ...+ .....+.+...+.++-.+++...+. +..+.+++..+.|.
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~ 406 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGH 406 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTC
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCC
Confidence 566667776532 1111 2234688999999999999987653 22456677776664
No 58
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=7.4e-06 Score=75.82 Aligned_cols=163 Identities=18% Similarity=0.208 Sum_probs=93.9
Q ss_pred CcccchhhhHHHHHHHhhc-------------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCCh
Q 038882 157 PRIIGQESIFDDVWRCIIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNL 223 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 223 (347)
.++-|-++.++.|.+.+.- ...+=|.++|++|+|||.||+.+++.. ..+| +.++.+.-.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~f---i~v~~s~l~-- 253 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT---SATF---LRIVGSELI-- 253 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCEE---EEEESGGGC--
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh---CCCE---EEEEHHHhh--
Confidence 4567888888777766532 135679999999999999999999987 3333 233322211
Q ss_pred HHHHHHHHHhcCCCCccccccChHHHHHHHHH-HhcCCcEEEEEeCCCCccc----------------ccccccCC--CC
Q 038882 224 EKVQEDIGKKIDLFSESWKNKSLVEKSCAIFK-ILSNKKFVLLLDDVWEPVD----------------LTKVGVPI--PN 284 (347)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~----------------~~~l~~~l--~~ 284 (347)
. .+...+. .....+.. .-+..+++|++|+++.... +..++..+ ..
T Consensus 254 -----------s----k~vGese-k~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~ 317 (437)
T 4b4t_I 254 -----------Q----KYLGDGP-RLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD 317 (437)
T ss_dssp -----------C----SSSSHHH-HHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC
T ss_pred -----------h----ccCchHH-HHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC
Confidence 0 0111111 22222222 2345789999999875310 01111111 12
Q ss_pred CCCCcEEEEecCChhHHhh--cCC---CceeecCCCCHHHHHHHHhhhhC------hhhHHHHHHHhCCc
Q 038882 285 STNASKVLFTTRYKEVCGK--MEA---HKKLRVECLTADEAWMLFNVKVG------EDTIDKIFVKCCCH 343 (347)
Q Consensus 285 ~~~gs~iiiTtR~~~v~~~--~~~---~~~~~l~~L~~~ea~~Lf~~~~~------~~~~~~I~~~~~G~ 343 (347)
...+..||.||...+.... +.+ ...+.++.-+.++-.++|+.++. +-.+..|++.+.|.
T Consensus 318 ~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~Gf 387 (437)
T 4b4t_I 318 DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDL 387 (437)
T ss_dssp CSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSC
T ss_pred CCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCC
Confidence 2344566777776654321 222 23577888888888888876552 22477788888775
No 59
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.25 E-value=1e-06 Score=72.45 Aligned_cols=151 Identities=18% Similarity=0.152 Sum_probs=78.0
Q ss_pred hhhhHHHHHHHhhc---cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCC
Q 038882 162 QESIFDDVWRCIIE---EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFS 238 (347)
Q Consensus 162 R~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 238 (347)
....++.+.+++.+ .....+.|+|++|+|||||++.+++.. .....+. +.++ +..++...+........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~-~~~~g~~-~~~~------~~~~~~~~~~~~~~~~~ 90 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI-YEKKGIR-GYFF------DTKDLIFRLKHLMDEGK 90 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH-HHHSCCC-CCEE------EHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH-HHHcCCe-EEEE------EHHHHHHHHHHHhcCch
Confidence 33444444444433 345789999999999999999999877 2111221 2233 34445544443332100
Q ss_pred ccccccChHHHHHHHHHHhcCCcEEEEEeCCCC--ccccc--ccccCCCC-CCCCcEEEEecCChhHHhhcCCCceeecC
Q 038882 239 ESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWE--PVDLT--KVGVPIPN-STNASKVLFTTRYKEVCGKMEAHKKLRVE 313 (347)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~--~l~~~l~~-~~~gs~iiiTtR~~~v~~~~~~~~~~~l~ 313 (347)
..... +.+. ++-+|||||++. ...|. .+...+.. ...|..+|+||.... .
T Consensus 91 -------~~~~~----~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~-------------~ 145 (180)
T 3ec2_A 91 -------DTKFL----KTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL-------------Q 145 (180)
T ss_dssp -------CSHHH----HHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS-------------C
T ss_pred -------HHHHH----HHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh-------------h
Confidence 01111 2222 566899999974 23332 11111111 124677888887431 0
Q ss_pred CCCH--HHHHHHHhhhhChhhHHHHHHHhCCccc
Q 038882 314 CLTA--DEAWMLFNVKVGEDTIDKIFVKCCCHTF 345 (347)
Q Consensus 314 ~L~~--~ea~~Lf~~~~~~~~~~~I~~~~~G~PL 345 (347)
.+.. -....-+..+.+......|...|.-+|+
T Consensus 146 ~~~~~~~~~~~~l~~~~~~~i~~rl~~~~~~i~~ 179 (180)
T 3ec2_A 146 REEESSVRISADLASRLGENVVSKIYEMNELLVI 179 (180)
T ss_dssp C---CHHHHHHHHHHHHCHHHHHHHHHHEEEECC
T ss_pred HhhhhccchhhHHHHHHHHHHHHHHHhcCeeeee
Confidence 0000 0011233455667777778777766554
No 60
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.21 E-value=1.9e-05 Score=79.68 Aligned_cols=154 Identities=18% Similarity=0.276 Sum_probs=89.5
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCC---CCCEEEEE-EecCCCChHHHHHHHHH
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERH---DFDIVIWV-VVSKDLNLEKVQEDIGK 232 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---~f~~~~wv-~vs~~~~~~~~~~~i~~ 232 (347)
..++||+++++.+.+.|......-+.|+|++|+|||++|+.+++......- ...+.+|. ..+. +
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~------l------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS------L------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------------
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHH------H------
Confidence 468999999999999998876777899999999999999999987621111 12333321 1111 0
Q ss_pred hcCCCCccccccChHHHHHHHHHHh-cCCcEEEEEeCCCCcc--------c--ccccccCCCCCCCCcEEEEecCChhHH
Q 038882 233 KIDLFSESWKNKSLVEKSCAIFKIL-SNKKFVLLLDDVWEPV--------D--LTKVGVPIPNSTNASKVLFTTRYKEVC 301 (347)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~--------~--~~~l~~~l~~~~~gs~iiiTtR~~~v~ 301 (347)
+.. .. ...........+.+.+ ..++.+|++|+++... . ...+..++.. ..+..+|.+|......
T Consensus 254 -~~~--~~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~~~~~ 328 (758)
T 1r6b_X 254 -LAG--TK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFS 328 (758)
T ss_dssp --CC--CC-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECHHHHH
T ss_pred -hcc--cc-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCchHHh
Confidence 000 00 0112233333333333 3467999999997541 1 1112222222 2345666666654332
Q ss_pred hhcC-------CCceeecCCCCHHHHHHHHhhh
Q 038882 302 GKME-------AHKKLRVECLTADEAWMLFNVK 327 (347)
Q Consensus 302 ~~~~-------~~~~~~l~~L~~~ea~~Lf~~~ 327 (347)
.... ....+.+++.+.++..+++...
T Consensus 329 ~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l 361 (758)
T 1r6b_X 329 NIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_dssp CCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHH
T ss_pred hhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHH
Confidence 1111 1136889999999998888754
No 61
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.19 E-value=3.7e-06 Score=73.65 Aligned_cols=149 Identities=15% Similarity=0.088 Sum_probs=80.7
Q ss_pred CcccchhhhHHHHHHHhhc------------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChH
Q 038882 157 PRIIGQESIFDDVWRCIIE------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLE 224 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 224 (347)
..++|.+..++.+.+.+.. ...+-+.|+|++|+|||+||+.+++.. ...|- .+..+.-.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~---~v~~~~~~--- 81 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---HVPFF---SMGGSSFI--- 81 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH---TCCCC---CCCSCTTT---
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEE---EechHHHH---
Confidence 5689998887777776541 113347899999999999999999876 22221 11111100
Q ss_pred HHHHHHHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCcc-----------------cccccccCCCC---
Q 038882 225 KVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPV-----------------DLTKVGVPIPN--- 284 (347)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------------~~~~l~~~l~~--- 284 (347)
..+.. . ...... ..+......++.+|+|||++... ....+...+..
T Consensus 82 -------~~~~~--~--~~~~~~---~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (268)
T 2r62_A 82 -------EMFVG--L--GASRVR---DLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS 147 (268)
T ss_dssp -------TSCSS--S--CSSSSS---TTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC
T ss_pred -------Hhhcc--h--HHHHHH---HHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc
Confidence 00000 0 001111 11222223467899999995431 12223222221
Q ss_pred CCCCcEEEEecCChhHH--hhcC---CCceeecCCCCHHHHHHHHhhhh
Q 038882 285 STNASKVLFTTRYKEVC--GKME---AHKKLRVECLTADEAWMLFNVKV 328 (347)
Q Consensus 285 ~~~gs~iiiTtR~~~v~--~~~~---~~~~~~l~~L~~~ea~~Lf~~~~ 328 (347)
......||.||...... .... ....+.++..+.++-.+++...+
T Consensus 148 ~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 148 ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 12234567777655421 1111 22467888888888888887654
No 62
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.19 E-value=5.2e-06 Score=83.74 Aligned_cols=149 Identities=13% Similarity=0.135 Sum_probs=83.5
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCC---CEEEEEEecCCCChHHHHHHHHHh
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDF---DIVIWVVVSKDLNLEKVQEDIGKK 233 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f---~~~~wv~vs~~~~~~~~~~~i~~~ 233 (347)
..++||+++++.+...|......-+.++|++|+|||++|+.+++........+ ++.+ +.++-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~-~~~~~-------------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV-MTLDM-------------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCE-ECC----------------
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeE-EEecc--------------
Confidence 46899999999999999876666789999999999999999998762111111 1111 11111
Q ss_pred cCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCcccccccccCCCCCCCCcEEEEecCChhHHhh-------cCC
Q 038882 234 IDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPVDLTKVGVPIPNSTNASKVLFTTRYKEVCGK-------MEA 306 (347)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~-------~~~ 306 (347)
+. .........+...+......++.+|++| ........+...+. ....++|.||........ ...
T Consensus 245 -g~---~~~G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rR 316 (758)
T 3pxi_A 245 -GT---KYRGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERR 316 (758)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHS
T ss_pred -cc---cccchHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhh
Confidence 00 0001111122233333444678999999 22222222333332 234566666655441110 011
Q ss_pred CceeecCCCCHHHHHHHHhhhh
Q 038882 307 HKKLRVECLTADEAWMLFNVKV 328 (347)
Q Consensus 307 ~~~~~l~~L~~~ea~~Lf~~~~ 328 (347)
...+.++..+.++..+++....
T Consensus 317 f~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 317 FQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp EEEEECCCCCHHHHHHHHHHTT
T ss_pred CcEEEeCCCCHHHHHHHHHHHH
Confidence 1468999999999999998543
No 63
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.18 E-value=4.4e-06 Score=74.76 Aligned_cols=46 Identities=35% Similarity=0.522 Sum_probs=38.4
Q ss_pred CcccchhhhHHHHHHHhhcc---------CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 157 PRIIGQESIFDDVWRCIIEE---------QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..++|.+..++.+...+... ....+.++|++|+|||++|+.+++..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 45789999988888887653 13589999999999999999999876
No 64
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.17 E-value=1.3e-05 Score=75.84 Aligned_cols=165 Identities=15% Similarity=0.163 Sum_probs=93.5
Q ss_pred CcccchhhhHHHHHHHhh---cc---------CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChH
Q 038882 157 PRIIGQESIFDDVWRCII---EE---------QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLE 224 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~---~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 224 (347)
..++|.++.++.+.+.+. .. ..+-+.|+|++|+|||+||+.+++.. ...| +.++.+.....
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~f---~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVPF---FHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCCE---EEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCe---eeCCHHHHHHH-
Confidence 468998887666665532 21 12458899999999999999999876 2222 33333322110
Q ss_pred HHHHHHHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCcc----------------cccccccCCC--CCC
Q 038882 225 KVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPV----------------DLTKVGVPIP--NST 286 (347)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------------~~~~l~~~l~--~~~ 286 (347)
+ ...........+.......+.+|+||+++... ....+...+. ...
T Consensus 89 ---------~-------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 89 ---------F-------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp ---------C-------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred ---------H-------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 0 01111222333444445689999999995531 0112211111 123
Q ss_pred CCcEEEEecCChhHHh--hcC---CCceeecCCCCHHHHHHHHhhhhC-----hh-hHHHHHHHhCCcc
Q 038882 287 NASKVLFTTRYKEVCG--KME---AHKKLRVECLTADEAWMLFNVKVG-----ED-TIDKIFVKCCCHT 344 (347)
Q Consensus 287 ~gs~iiiTtR~~~v~~--~~~---~~~~~~l~~L~~~ea~~Lf~~~~~-----~~-~~~~I~~~~~G~P 344 (347)
.+..||.||...+... ... ....+.++..+.++-.+++...+. ++ ....|...+.|+.
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~s 221 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFV 221 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCC
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCc
Confidence 4566777887765422 122 223678888888777777765542 22 3566777777654
No 65
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.11 E-value=8.3e-06 Score=71.32 Aligned_cols=46 Identities=17% Similarity=0.264 Sum_probs=34.6
Q ss_pred CcccchhhhHHHHHHHhhc--cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 157 PRIIGQESIFDDVWRCIIE--EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..++|.+..+..+.+.+.. .....+.|+|.+|+|||+||+.+++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 4578999988888776653 234678899999999999999998865
No 66
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.10 E-value=3e-05 Score=67.38 Aligned_cols=163 Identities=13% Similarity=0.098 Sum_probs=87.5
Q ss_pred CcccchhhhHHHHHHHhh---cc---------CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChH
Q 038882 157 PRIIGQESIFDDVWRCII---EE---------QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLE 224 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~---~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 224 (347)
..++|.+..++.+.+.+. .. ..+-+.|+|++|+||||||+.+++.. ...| +.++.+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~---~~i~~~~~~~-- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSDFVE-- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCE---EEECSCSSTT--
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCCE---EEEeHHHHHH--
Confidence 568998877776655432 21 23458899999999999999999876 2222 3333222100
Q ss_pred HHHHHHHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCccc----------------ccccccCCC--CCC
Q 038882 225 KVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPVD----------------LTKVGVPIP--NST 286 (347)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----------------~~~l~~~l~--~~~ 286 (347)
. ............+.......+.++++|+++.... ...+...+. ...
T Consensus 84 --------~-------~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 84 --------M-------FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp --------S-------CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred --------H-------hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 0 0111222233333344445678999999843210 011111110 123
Q ss_pred CCcEEEEecCChhHH-hh-cC---CCceeecCCCCHHHHHHHHhhhhC------hhhHHHHHHHhCC
Q 038882 287 NASKVLFTTRYKEVC-GK-ME---AHKKLRVECLTADEAWMLFNVKVG------EDTIDKIFVKCCC 342 (347)
Q Consensus 287 ~gs~iiiTtR~~~v~-~~-~~---~~~~~~l~~L~~~ea~~Lf~~~~~------~~~~~~I~~~~~G 342 (347)
.+..||.||...... .. .. ....+.++..+.++-.+++...+. +.....+...+.|
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G 215 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPG 215 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTT
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCC
Confidence 345677777665421 11 11 234677888888887777766542 2224555565555
No 67
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.05 E-value=3.2e-06 Score=67.36 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=30.4
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..++|.+.+. ...|..-....+.|+|++|+|||||++.+++..
T Consensus 18 ~f~~g~n~~~---~~~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 18 KFLGTENAEL---VYVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCCSCCTHHH---HHHCCCCCCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred hcCcCccHHH---HHHHHhcCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445544433 333333245789999999999999999999977
No 68
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.02 E-value=3e-05 Score=69.30 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=37.9
Q ss_pred CcccchhhhHHHHHHHhhc--cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 157 PRIIGQESIFDDVWRCIIE--EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+.++|+...+..+.+.+.. .....|.|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 4579999999998888765 345678899999999999999998865
No 69
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.99 E-value=2e-05 Score=65.80 Aligned_cols=113 Identities=22% Similarity=0.218 Sum_probs=61.2
Q ss_pred hHHHHHHHhhccC----ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCcc
Q 038882 165 IFDDVWRCIIEEQ----VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSES 240 (347)
Q Consensus 165 ~~~~l~~~L~~~~----~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~ 240 (347)
.++.+.+++.... ...+.|+|++|+|||+||+.+++.. . .....++|++++ .+...+......
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~-~--~~~~~~~~~~~~------~~~~~~~~~~~~---- 103 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANEL-A--KRNVSSLIVYVP------ELFRELKHSLQD---- 103 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHH-H--TTTCCEEEEEHH------HHHHHHHHC-------
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHH-H--HcCCeEEEEEhH------HHHHHHHHHhcc----
Confidence 4455555555431 1788999999999999999999877 2 223345566543 444444433321
Q ss_pred ccccChHHHHHHHHHHhcCCcEEEEEeCCCCc--ccccc--ccc-CCCCC-CCCcEEEEecCCh
Q 038882 241 WKNKSLVEKSCAIFKILSNKKFVLLLDDVWEP--VDLTK--VGV-PIPNS-TNASKVLFTTRYK 298 (347)
Q Consensus 241 ~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~--l~~-~l~~~-~~gs~iiiTtR~~ 298 (347)
......... +.+. -+|||||++.. ..|.. +.. .+... ..+.++|+||...
T Consensus 104 ---~~~~~~~~~----~~~~-~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 104 ---QTMNEKLDY----IKKV-PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp ---CCCHHHHHH----HHHS-SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred ---chHHHHHHH----hcCC-CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 111222222 2222 39999999653 33322 211 11111 2355788888743
No 70
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.96 E-value=2e-06 Score=68.06 Aligned_cols=46 Identities=13% Similarity=0.160 Sum_probs=34.3
Q ss_pred CcccchhhhHHHHHHHhhc--cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 157 PRIIGQESIFDDVWRCIIE--EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..++|++..++.+.+.+.. .....|.|+|.+|+|||++|+.+++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 3578999998888887754 334567899999999999999987654
No 71
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.95 E-value=2.2e-05 Score=78.70 Aligned_cols=163 Identities=13% Similarity=0.157 Sum_probs=94.1
Q ss_pred cccchhhhHHHHHHHhhc-------------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChH
Q 038882 158 RIIGQESIFDDVWRCIIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLE 224 (347)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 224 (347)
++.|.++.+++|.+++.- ...+-|.++|++|+|||+||+.+++.. ..+| +.++.+
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~~---~~v~~~------ 272 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFF---FLINGP------ 272 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCEE---EEEEHH------
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCeE---EEEEhH------
Confidence 467888887777776532 135678999999999999999999876 2222 333322
Q ss_pred HHHHHHHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCcc--------c-----ccccccCCC--CCCCCc
Q 038882 225 KVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPV--------D-----LTKVGVPIP--NSTNAS 289 (347)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~-----~~~l~~~l~--~~~~gs 289 (347)
++.... .......+...+....+..+++|+||+++... + ...++..+. ....+.
T Consensus 273 ----~l~sk~-------~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V 341 (806)
T 3cf2_A 273 ----EIMSKL-------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp ----HHHSSC-------TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCE
T ss_pred ----Hhhccc-------chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCE
Confidence 111111 11122223333334445679999999996531 0 011111110 112234
Q ss_pred EEEEecCChhHH-hhc----CCCceeecCCCCHHHHHHHHhhhhC------hhhHHHHHHHhCCc
Q 038882 290 KVLFTTRYKEVC-GKM----EAHKKLRVECLTADEAWMLFNVKVG------EDTIDKIFVKCCCH 343 (347)
Q Consensus 290 ~iiiTtR~~~v~-~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~------~~~~~~I~~~~~G~ 343 (347)
.||.||...+.. ..+ .-...+.++..+.++-.++|+.... +-.+..|+.++.|.
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~Gf 406 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGH 406 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSC
T ss_pred EEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCC
Confidence 455566554321 111 1234788888898888888876652 33477788888775
No 72
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.94 E-value=6.5e-06 Score=83.02 Aligned_cols=145 Identities=17% Similarity=0.212 Sum_probs=82.5
Q ss_pred CcccchhhhHHHHHHHhhcc---------CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHH
Q 038882 157 PRIIGQESIFDDVWRCIIEE---------QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQ 227 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 227 (347)
..++|.+..++.+...+... ....+.++|++|+|||+||+.+++.. ...-...+.++++.-.....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l---~~~~~~~i~i~~s~~~~~~~-- 565 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI---FGDEESMIRIDMSEYMEKHS-- 565 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH---HSCTTCEEEEEGGGGCSSCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh---cCCCcceEEEechhcccccc--
Confidence 46899999998888887642 22369999999999999999999876 12222334555543211000
Q ss_pred HHHHHhcCCCCccccccChHHHHHHHHHHh-cCCcEEEEEeCCCCc--ccccccccCC-----C------CCCCCcEEEE
Q 038882 228 EDIGKKIDLFSESWKNKSLVEKSCAIFKIL-SNKKFVLLLDDVWEP--VDLTKVGVPI-----P------NSTNASKVLF 293 (347)
Q Consensus 228 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~--~~~~~l~~~l-----~------~~~~gs~iii 293 (347)
.... .+.+.+ .....+|+||+++.. .....+...+ . ....+.+||+
T Consensus 566 ----------------~~~~----~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ 625 (758)
T 3pxi_A 566 ----------------TSGG----QLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIM 625 (758)
T ss_dssp ----------------CC-------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEE
T ss_pred ----------------cccc----hhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEE
Confidence 0001 111112 123458999999654 1112211111 1 0124568888
Q ss_pred ecCCh-----------------hHHhhcCCCceeecCCCCHHHHHHHHhhhh
Q 038882 294 TTRYK-----------------EVCGKMEAHKKLRVECLTADEAWMLFNVKV 328 (347)
Q Consensus 294 TtR~~-----------------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 328 (347)
||... .+...+ ...+.+++|+.++..+++...+
T Consensus 626 ttn~~~~~~~~~~~~~~~~f~p~l~~Rl--~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 626 TSNVGASEKDKVMGELKRAFRPEFINRI--DEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp EESSSTTCCHHHHHHHHHHSCHHHHTTS--SEEEECC--CHHHHHHHHHHHH
T ss_pred eCCCChhhHHHHHHHHHhhCCHHHHhhC--CeEEecCCCCHHHHHHHHHHHH
Confidence 88731 111222 2478999999999888886643
No 73
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.94 E-value=5.7e-05 Score=68.46 Aligned_cols=46 Identities=28% Similarity=0.389 Sum_probs=36.9
Q ss_pred CcccchhhhHHHHHHHhhcc-----CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 157 PRIIGQESIFDDVWRCIIEE-----QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~-----~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..++|.+..++.+...+... ....+.++|++|+||||||+.+++..
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 45789888777776666542 34679999999999999999999876
No 74
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.91 E-value=6.7e-05 Score=71.03 Aligned_cols=46 Identities=24% Similarity=0.304 Sum_probs=35.9
Q ss_pred CcccchhhhHHHHHHHh---hcc--CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 157 PRIIGQESIFDDVWRCI---IEE--QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L---~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..++|.++.++.+..++ ..+ ..+-+.++|++|+|||+||+.+++..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 67899998877655443 333 23578899999999999999999876
No 75
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.86 E-value=0.00014 Score=70.35 Aligned_cols=154 Identities=14% Similarity=0.131 Sum_probs=78.1
Q ss_pred CcccchhhhHHHHHHHhhc------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHH
Q 038882 157 PRIIGQESIFDDVWRCIIE------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDI 230 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 230 (347)
..++|-++-...+.+.+.- .....+.++|++|+||||||+.++... ...| ..+.++...+...+....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l---~~~~---~~i~~~~~~~~~~~~g~~ 154 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL---GRKF---VRISLGGVRDESEIRGHR 154 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH---TCEE---EEECCCC-----------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc---CCCe---EEEEecccchhhhhhhHH
Confidence 3568877776666554322 145689999999999999999999876 2222 223333322211111111
Q ss_pred HHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCccc------ccccccCCCCC---------------CCCc
Q 038882 231 GKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPVD------LTKVGVPIPNS---------------TNAS 289 (347)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~------~~~l~~~l~~~---------------~~gs 289 (347)
....+. ........+. ......-+++||+++.... ...++..+... ..+.
T Consensus 155 ~~~ig~--------~~~~~~~~~~-~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v 225 (543)
T 3m6a_A 155 RTYVGA--------MPGRIIQGMK-KAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKV 225 (543)
T ss_dssp -----------------CHHHHHH-TTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSC
T ss_pred HHHhcc--------CchHHHHHHH-HhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccce
Confidence 111110 1111111122 1222344888999976411 12232222110 0345
Q ss_pred EEEEecCChh-----HHhhcCCCceeecCCCCHHHHHHHHhhhh
Q 038882 290 KVLFTTRYKE-----VCGKMEAHKKLRVECLTADEAWMLFNVKV 328 (347)
Q Consensus 290 ~iiiTtR~~~-----v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 328 (347)
.+|.||.... +...+ ..+.+++++.++-.+++...+
T Consensus 226 ~iI~ttN~~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 226 LFIATANNLATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EEEEECSSTTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred EEEeccCccccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 6677776543 22333 468999999999888887653
No 76
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.83 E-value=8e-05 Score=66.16 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.7
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+.++|++|+|||+||+.+++..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999886
No 77
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.68 E-value=0.00056 Score=60.01 Aligned_cols=148 Identities=17% Similarity=0.167 Sum_probs=79.3
Q ss_pred CcccchhhhHHHHHHHhhc-------------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCCh
Q 038882 157 PRIIGQESIFDDVWRCIIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNL 223 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 223 (347)
.++.|-++..+.|.+.+.. ...+-+.++|++|+||||||+.++... .. ..+++..+.-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~---~~---~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES---GL---NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc---CC---CEEEEEcHHHHhh
Confidence 5567888777777665421 011228999999999999999999875 21 2344432221100
Q ss_pred HHHHHHHHHhcCCCCccccccChHHHHHHHHHHh-cCCcEEEEEeCCCCccc---------ccc----cccCCC--CCCC
Q 038882 224 EKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKIL-SNKKFVLLLDDVWEPVD---------LTK----VGVPIP--NSTN 287 (347)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~---------~~~----l~~~l~--~~~~ 287 (347)
.... .......+.+.. ...++++++|+++.... ... +...+. ....
T Consensus 84 -----------------~~~~-~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~ 145 (274)
T 2x8a_A 84 -----------------YVGE-SERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQ 145 (274)
T ss_dssp -----------------TTHH-HHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTT
T ss_pred -----------------hhhH-HHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccC
Confidence 0000 011122222222 34678999999965310 000 111111 1123
Q ss_pred CcEEEEecCChhHHhh--c---CCCceeecCCCCHHHHHHHHhhhh
Q 038882 288 ASKVLFTTRYKEVCGK--M---EAHKKLRVECLTADEAWMLFNVKV 328 (347)
Q Consensus 288 gs~iiiTtR~~~v~~~--~---~~~~~~~l~~L~~~ea~~Lf~~~~ 328 (347)
..-++.+|....+... . .-...+.++..+.++-.++|+...
T Consensus 146 ~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 146 QVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp CEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred CEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 3445667776654321 1 224567888889988888887654
No 78
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.64 E-value=0.00012 Score=74.12 Aligned_cols=149 Identities=13% Similarity=0.121 Sum_probs=83.3
Q ss_pred CcccchhhhHHHHHHHhhc-------------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCCh
Q 038882 157 PRIIGQESIFDDVWRCIIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNL 223 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 223 (347)
..++|.+..++.|.+++.. .....+.|+|++|+||||||+.+++.. ...| +.++.+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l---~~~~---i~v~~~~---- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFF---FLINGPE---- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT---TCEE---EEEEHHH----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCcE---EEEEchH----
Confidence 4578999988888887753 234679999999999999999998765 2222 3333211
Q ss_pred HHHHHHHHHhcCCCCccccccChHHHHHHHHHHhcCCcEEEEEeCCCCccc-------------ccccccCCC--CCCCC
Q 038882 224 EKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEPVD-------------LTKVGVPIP--NSTNA 288 (347)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------------~~~l~~~l~--~~~~g 288 (347)
+. +. ............+.......+.++++|+++.... ...+...+. ....+
T Consensus 274 ------l~---~~----~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~ 340 (806)
T 1ypw_A 274 ------IM---SK----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp ------HS---SS----STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSC
T ss_pred ------hh---hh----hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhccccc
Confidence 11 00 0011112222333333345789999999943210 011111111 11234
Q ss_pred cEEEEecCChhHH-hhc----CCCceeecCCCCHHHHHHHHhhhh
Q 038882 289 SKVLFTTRYKEVC-GKM----EAHKKLRVECLTADEAWMLFNVKV 328 (347)
Q Consensus 289 s~iiiTtR~~~v~-~~~----~~~~~~~l~~L~~~ea~~Lf~~~~ 328 (347)
..+|.||...... ..+ .....+.+...+.++-.+++...+
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 5566666654321 111 112356788888888888887654
No 79
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.61 E-value=0.00071 Score=58.46 Aligned_cols=163 Identities=12% Similarity=0.153 Sum_probs=84.1
Q ss_pred CcccchhhhHHHHHHHhh---cc---------CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChH
Q 038882 157 PRIIGQESIFDDVWRCII---EE---------QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLE 224 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~---~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 224 (347)
..++|.++....+.+... .. -.+-+.|+|++|+|||||++.+++.. .. ..+.+...
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~---~~---~~i~~~~~------ 83 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RV---PFITASGS------ 83 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT---TC---CEEEEEHH------
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CC---CEEEeeHH------
Confidence 467888766555544332 11 11238999999999999999999876 21 22333221
Q ss_pred HHHHHHHHhcCCCCccccccChHHHHHHHHHHh-cCCcEEEEEeCCCCcc------------c----ccccccCCCC--C
Q 038882 225 KVQEDIGKKIDLFSESWKNKSLVEKSCAIFKIL-SNKKFVLLLDDVWEPV------------D----LTKVGVPIPN--S 285 (347)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~------------~----~~~l~~~l~~--~ 285 (347)
. +..... .. .......+.+.. ...+.++++|+++... . ...+...+.. .
T Consensus 84 ~----~~~~~~-------~~-~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 151 (254)
T 1ixz_A 84 D----FVEMFV-------GV-GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 151 (254)
T ss_dssp H----HHHSCT-------TH-HHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT
T ss_pred H----HHHHHh-------hH-HHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC
Confidence 1 111100 00 011122222322 2457899999994320 0 1112111111 1
Q ss_pred CCCcEEEEecCChhHHhh--c---CCCceeecCCCCHHHHHHHHhhhhC------hhhHHHHHHHhCCc
Q 038882 286 TNASKVLFTTRYKEVCGK--M---EAHKKLRVECLTADEAWMLFNVKVG------EDTIDKIFVKCCCH 343 (347)
Q Consensus 286 ~~gs~iiiTtR~~~v~~~--~---~~~~~~~l~~L~~~ea~~Lf~~~~~------~~~~~~I~~~~~G~ 343 (347)
.....++.||........ . .....+.++..+.++-.+++...+. +.....|+..+.|+
T Consensus 152 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~ 220 (254)
T 1ixz_A 152 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGF 220 (254)
T ss_dssp TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTC
T ss_pred CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCC
Confidence 222344556666554221 1 2234678888888888888765542 22355666666664
No 80
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.57 E-value=0.00018 Score=73.40 Aligned_cols=46 Identities=35% Similarity=0.522 Sum_probs=37.7
Q ss_pred CcccchhhhHHHHHHHhhcc---------CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 157 PRIIGQESIFDDVWRCIIEE---------QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..++|.+..++.+...+... ....+.|+|++|+|||++|+.+++..
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999888888877542 22588999999999999999999876
No 81
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.56 E-value=0.00012 Score=73.86 Aligned_cols=46 Identities=30% Similarity=0.411 Sum_probs=37.7
Q ss_pred CcccchhhhHHHHHHHhhcc---------CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 157 PRIIGQESIFDDVWRCIIEE---------QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..++|.+..++.+...+... ....+.++|++|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 56899999988888776531 23478999999999999999998876
No 82
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.56 E-value=0.0007 Score=64.47 Aligned_cols=160 Identities=12% Similarity=0.145 Sum_probs=86.8
Q ss_pred CcccchhhhHHHHHHHh---hcc---------CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChH
Q 038882 157 PRIIGQESIFDDVWRCI---IEE---------QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLE 224 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L---~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 224 (347)
.+++|.++.+..+.+.. ... -.+-+.|+|++|+|||+||+.+++.. .. ..+.++.+.-..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~---~~---~~i~i~g~~~~~-- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RV---PFITASGSDFVE-- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT---TC---CEEEEEGGGGTS--
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CC---CEEEEehhHHHH--
Confidence 56899887766665543 221 12348999999999999999999876 22 233443332110
Q ss_pred HHHHHHHHhcCCCCccccccChHHHHHHHHHHhcC----CcEEEEEeCCCCccc----------------ccccccCCC-
Q 038882 225 KVQEDIGKKIDLFSESWKNKSLVEKSCAIFKILSN----KKFVLLLDDVWEPVD----------------LTKVGVPIP- 283 (347)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~----kr~LlVlDdv~~~~~----------------~~~l~~~l~- 283 (347)
.........+...++. .+.++++|+++.... ...+...+.
T Consensus 103 -------------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg 163 (499)
T 2dhr_A 103 -------------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 163 (499)
T ss_dssp -------------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG
T ss_pred -------------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc
Confidence 0011112233344432 358999999954210 111211111
Q ss_pred -CCCCCcEEEEecCChhHHhh--c---CCCceeecCCCCHHHHHHHHhhhhC------hhhHHHHHHHhCCc
Q 038882 284 -NSTNASKVLFTTRYKEVCGK--M---EAHKKLRVECLTADEAWMLFNVKVG------EDTIDKIFVKCCCH 343 (347)
Q Consensus 284 -~~~~gs~iiiTtR~~~v~~~--~---~~~~~~~l~~L~~~ea~~Lf~~~~~------~~~~~~I~~~~~G~ 343 (347)
....+..++.||..+..... . .....+.++..+.++-.+++...+. +.....|+..+.|+
T Consensus 164 ~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~ 235 (499)
T 2dhr_A 164 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGF 235 (499)
T ss_dssp CCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSC
T ss_pred cccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCC
Confidence 12234456667776654221 1 1234778888888888888876542 12244455555543
No 83
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.55 E-value=0.00028 Score=59.33 Aligned_cols=89 Identities=18% Similarity=0.193 Sum_probs=54.6
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCcc-------ccccCh---
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSES-------WKNKSL--- 246 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~--- 246 (347)
...++.|+|.+|+|||||+..++. . . -..++|++.....+...+.. +...++..... ....+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~-~----~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L-S----GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQ 91 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H-H----CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H-c----CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHH
Confidence 456999999999999999999987 2 1 24678887766556555443 44433321000 011112
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCCc
Q 038882 247 VEKSCAIFKILSNKKFVLLLDDVWEP 272 (347)
Q Consensus 247 ~~~~~~l~~~l~~kr~LlVlDdv~~~ 272 (347)
.+....++..+..++-+||||.+...
T Consensus 92 ~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 92 RRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 23444455555446889999998654
No 84
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.51 E-value=0.0004 Score=61.01 Aligned_cols=163 Identities=12% Similarity=0.132 Sum_probs=84.3
Q ss_pred CcccchhhhHHHHHHHhh---cc---------CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChH
Q 038882 157 PRIIGQESIFDDVWRCII---EE---------QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLE 224 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~---~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 224 (347)
..++|.++....+.+... .. -.+-+.|+|++|+|||||++.++... . ...+.+...
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~---~---~~~i~~~~~------ 107 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---R---VPFITASGS------ 107 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT---T---CCEEEEEHH------
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc---C---CCEEEecHH------
Confidence 567898876666554432 11 11238999999999999999999876 2 122333221
Q ss_pred HHHHHHHHhcCCCCccccccChHHHHHHHHHHh-cCCcEEEEEeCCCCcc------------c----ccccccCCCCC--
Q 038882 225 KVQEDIGKKIDLFSESWKNKSLVEKSCAIFKIL-SNKKFVLLLDDVWEPV------------D----LTKVGVPIPNS-- 285 (347)
Q Consensus 225 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~------------~----~~~l~~~l~~~-- 285 (347)
. +..... .. .......+.+.. ...+.++++||++... . ...+...+...
T Consensus 108 ~----~~~~~~-------~~-~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~ 175 (278)
T 1iy2_A 108 D----FVEMFV-------GV-GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 175 (278)
T ss_dssp H----HHHSTT-------TH-HHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT
T ss_pred H----HHHHHh-------hH-HHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC
Confidence 1 111100 00 011112222222 3467899999984210 0 11111112211
Q ss_pred CCCcEEEEecCChhHHh-----hcCCCceeecCCCCHHHHHHHHhhhhC------hhhHHHHHHHhCCc
Q 038882 286 TNASKVLFTTRYKEVCG-----KMEAHKKLRVECLTADEAWMLFNVKVG------EDTIDKIFVKCCCH 343 (347)
Q Consensus 286 ~~gs~iiiTtR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~~------~~~~~~I~~~~~G~ 343 (347)
.....++.||....... .......+.++..+.++-.+++...+. +.....++..+.|+
T Consensus 176 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~ 244 (278)
T 1iy2_A 176 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGF 244 (278)
T ss_dssp TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTC
T ss_pred CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCC
Confidence 12234455666554321 112345788888898888888876542 22355566666664
No 85
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.50 E-value=8.2e-05 Score=66.34 Aligned_cols=70 Identities=20% Similarity=0.319 Sum_probs=45.8
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEe--cCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHH
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVV--SKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFK 255 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~v--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 255 (347)
.+++.|+|++|+|||+||.+++... . ..++|++. .+. +... ..+.+.....+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~-G-----~~VlyIs~~~eE~-------------v~~~-----~~~le~~l~~i~~ 178 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEAL-G-----GKDKYATVRFGEP-------------LSGY-----NTDFNVFVDDIAR 178 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHH-H-----TTSCCEEEEBSCS-------------STTC-----BCCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhC-C-----CCEEEEEecchhh-------------hhhh-----hcCHHHHHHHHHH
Confidence 4677899999999999999998752 1 12345555 222 1110 1344556666667
Q ss_pred HhcCCcEEEEEeCCCCc
Q 038882 256 ILSNKKFVLLLDDVWEP 272 (347)
Q Consensus 256 ~l~~kr~LlVlDdv~~~ 272 (347)
.+...+ +||+|++...
T Consensus 179 ~l~~~~-LLVIDsI~aL 194 (331)
T 2vhj_A 179 AMLQHR-VIVIDSLKNV 194 (331)
T ss_dssp HHHHCS-EEEEECCTTT
T ss_pred HHhhCC-EEEEeccccc
Confidence 776666 9999999654
No 86
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.49 E-value=0.00045 Score=59.03 Aligned_cols=94 Identities=11% Similarity=0.107 Sum_probs=57.1
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCC----CCCEEEEEEecCCCChHHHHHHHHHhcCCCCc----c---ccccC
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERH----DFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSE----S---WKNKS 245 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----~---~~~~~ 245 (347)
...++.|+|++|+|||||+..++... .... .-..++|++....++...+ .+++..++.... . ....+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~-~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTC-QLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHT-TSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-hCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCC
Confidence 45799999999999999999998753 1111 2357888887765555444 344455543210 0 01122
Q ss_pred hHH---HHHHHHHHhc-CCcEEEEEeCCCCc
Q 038882 246 LVE---KSCAIFKILS-NKKFVLLLDDVWEP 272 (347)
Q Consensus 246 ~~~---~~~~l~~~l~-~kr~LlVlDdv~~~ 272 (347)
..+ ....+.+.+. .+.-+||||++...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchHH
Confidence 222 2333445553 47889999998643
No 87
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.42 E-value=0.00015 Score=59.92 Aligned_cols=118 Identities=19% Similarity=0.130 Sum_probs=61.7
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecC---CCChHHHHHHHHHh---cCCCCccccc-------c
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSK---DLNLEKVQEDIGKK---IDLFSESWKN-------K 244 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~---~~~~~~~~~~i~~~---l~~~~~~~~~-------~ 244 (347)
...|.|++..|.||||+|--..-+. ..+=..+.++...+ ......++..+.-. .+. .-.+.. .
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA---~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~-gf~~~~~~~~~~~~ 103 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARA---VGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMAT-GFTWETQNREADTA 103 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHH---HHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCT-TCCCCGGGHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEccc-ccccCCCCcHHHHH
Confidence 4567777778899999998887765 22222344443322 22333444333100 000 000111 1
Q ss_pred ChHHHHHHHHHHhcCC-cEEEEEeCCCC-----cccccccccCCCCCCCCcEEEEecCChh
Q 038882 245 SLVEKSCAIFKILSNK-KFVLLLDDVWE-----PVDLTKVGVPIPNSTNASKVLFTTRYKE 299 (347)
Q Consensus 245 ~~~~~~~~l~~~l~~k-r~LlVlDdv~~-----~~~~~~l~~~l~~~~~gs~iiiTtR~~~ 299 (347)
.........++.+.+. -=|||||++-. ..+.+.+...+........||+|+|...
T Consensus 104 ~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 104 ACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 1122334455555554 45999999832 2233334333444556778999999863
No 88
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.41 E-value=0.00057 Score=62.14 Aligned_cols=88 Identities=14% Similarity=0.121 Sum_probs=57.2
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCcc---ccccChHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSES---WKNKSLVEKSCAI 253 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 253 (347)
...++.|+|++|+|||||+..++... .. .-..++|++....++.. .+..++...+. ....+.++....+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~-~~--~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA-QK--MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH-HH--TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-Hh--cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 45799999999999999999998876 21 22356788776666543 34444432211 1233455555566
Q ss_pred HHHhc-CCcEEEEEeCCCCc
Q 038882 254 FKILS-NKKFVLLLDDVWEP 272 (347)
Q Consensus 254 ~~~l~-~kr~LlVlDdv~~~ 272 (347)
...++ .+.-++|+|.+...
T Consensus 132 ~~l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHHHTSCCSEEEEECTTTC
T ss_pred HHHhhhcCCCeEEehHhhhh
Confidence 65554 45679999998543
No 89
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.38 E-value=0.001 Score=59.85 Aligned_cols=94 Identities=15% Similarity=0.198 Sum_probs=59.6
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccC---CCCCEEEEEEecCCCChHHHHHHHHHhcCCCCcc-------ccccCh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHER---HDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSES-------WKNKSL 246 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 246 (347)
...++.|+|.+|+|||+||..++....... ..-..++|++....++..++. +++..++..... ....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCH
Confidence 457999999999999999999987641110 013478899888877776655 345555542110 111222
Q ss_pred H---HHHHHHHHHhc--CCcEEEEEeCCCC
Q 038882 247 V---EKSCAIFKILS--NKKFVLLLDDVWE 271 (347)
Q Consensus 247 ~---~~~~~l~~~l~--~kr~LlVlDdv~~ 271 (347)
. ++...+...++ .+.-+||+|.+..
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 2 33445555554 4678999999854
No 90
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.34 E-value=0.0013 Score=59.65 Aligned_cols=94 Identities=14% Similarity=0.158 Sum_probs=58.4
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCC---CCCEEEEEEecCCCChHHHHHHHHHhcCCCCc----c---ccccCh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERH---DFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSE----S---WKNKSL 246 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----~---~~~~~~ 246 (347)
...++.|+|.+|+|||+||..++........ .-..++|++....++...+. +++..++.... . ....+.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCCH
Confidence 4579999999999999999999876411100 23478899988877776654 34455543211 0 011122
Q ss_pred H---HHHHHHHHHhc---CCcEEEEEeCCCC
Q 038882 247 V---EKSCAIFKILS---NKKFVLLLDDVWE 271 (347)
Q Consensus 247 ~---~~~~~l~~~l~---~kr~LlVlDdv~~ 271 (347)
. ++...+...++ .+.-+||+|.+..
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 2 33344455554 5677999999854
No 91
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.28 E-value=0.002 Score=57.27 Aligned_cols=88 Identities=11% Similarity=0.102 Sum_probs=56.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccc---cccChHHH-HHHHH
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESW---KNKSLVEK-SCAIF 254 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~-~~~l~ 254 (347)
.++.|.|++|+|||||+.+++... .....-..++|++....++.. .+++++...+.. ...+.++. ...+.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~-~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSY-MRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH-HHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-HhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 378999999999999999988766 211113467899887777653 256666532221 12344444 33332
Q ss_pred HH--h-cCCcEEEEEeCCCCc
Q 038882 255 KI--L-SNKKFVLLLDDVWEP 272 (347)
Q Consensus 255 ~~--l-~~kr~LlVlDdv~~~ 272 (347)
.. + +++.-|||+|-+...
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTC
T ss_pred HHHHhhccCceEEEEeccccc
Confidence 22 3 357889999999654
No 92
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.27 E-value=0.00013 Score=61.84 Aligned_cols=112 Identities=18% Similarity=-0.027 Sum_probs=60.7
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKI 256 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 256 (347)
...++.|+|.+|+||||++..+.++. ... .. .++.+..... .. ....++..++............+....+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~-~~~-g~-kVli~~~~~d--~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRL-EYA-DV-KYLVFKPKID--TR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHH-HHT-TC-CEEEEEECCC--GG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHH-Hhc-CC-EEEEEEeccC--ch-HHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 35789999999999999999888877 222 22 3333332221 11 2224455555422222223334444555544
Q ss_pred hcCCc-EEEEEeCCCCc--ccccccccCCCCCCCCcEEEEecCC
Q 038882 257 LSNKK-FVLLLDDVWEP--VDLTKVGVPIPNSTNASKVLFTTRY 297 (347)
Q Consensus 257 l~~kr-~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~ 297 (347)
+.+.+ -+||+|.+... +..+.+ ..+.+ .|..||+|.+.
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~ 125 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLD 125 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCS
T ss_pred hhCCCCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEecc
Confidence 44444 49999998542 122222 11211 26778888883
No 93
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.21 E-value=0.0005 Score=61.41 Aligned_cols=40 Identities=25% Similarity=0.407 Sum_probs=30.1
Q ss_pred hhhHHHHHHHhhcc---CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 163 ESIFDDVWRCIIEE---QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 163 ~~~~~~l~~~L~~~---~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+..+.+++... ....+.|+|++|+|||+||..+++..
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 33445555565542 24788999999999999999999977
No 94
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.17 E-value=0.0034 Score=56.73 Aligned_cols=152 Identities=6% Similarity=-0.072 Sum_probs=92.1
Q ss_pred HHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHH
Q 038882 169 VWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVE 248 (347)
Q Consensus 169 l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 248 (347)
+.+.+...-.++..++|+.|.||++.+..+.... . ...|+....+.+....++.++...
T Consensus 9 l~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~l~~~------------------- 67 (343)
T 1jr3_D 9 LRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVA-A-AQGFEEHHTFSIDPNTDWNAIFSL------------------- 67 (343)
T ss_dssp HHHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHH-H-HHTCCEEEEEECCTTCCHHHHHHH-------------------
T ss_pred HHHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHH-H-hCCCCeeEEEEecCCCCHHHHHHH-------------------
Confidence 3344443446789999999999999999998865 2 123432212223333333333222
Q ss_pred HHHHHHHH-hcCCcEEEEEeCCCC-c--ccccccccCCCCCCCCcEEEEecCC-------hhHHhhcC-CCceeecCCCC
Q 038882 249 KSCAIFKI-LSNKKFVLLLDDVWE-P--VDLTKVGVPIPNSTNASKVLFTTRY-------KEVCGKME-AHKKLRVECLT 316 (347)
Q Consensus 249 ~~~~l~~~-l~~kr~LlVlDdv~~-~--~~~~~l~~~l~~~~~gs~iiiTtR~-------~~v~~~~~-~~~~~~l~~L~ 316 (347)
+... +-+++-++|+|+++. . ..++.+...+.....++.+|++|.. ..+...+. ....++..+++
T Consensus 68 ----~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~ 143 (343)
T 1jr3_D 68 ----CQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPE 143 (343)
T ss_dssp ----HHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCC
T ss_pred ----hcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCC
Confidence 2111 235677889999865 3 4455555545444557777776643 23333332 23578999999
Q ss_pred HHHHHHHHhhhh-------ChhhHHHHHHHhCCccc
Q 038882 317 ADEAWMLFNVKV-------GEDTIDKIFVKCCCHTF 345 (347)
Q Consensus 317 ~~ea~~Lf~~~~-------~~~~~~~I~~~~~G~PL 345 (347)
.++....+.+.+ .++.+..|++.++|.+.
T Consensus 144 ~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~ 179 (343)
T 1jr3_D 144 QAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLL 179 (343)
T ss_dssp TTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHH
Confidence 999988887764 35677788888888653
No 95
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.16 E-value=0.0016 Score=59.23 Aligned_cols=87 Identities=17% Similarity=0.186 Sum_probs=56.1
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCcc---ccccChHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSES---WKNKSLVEKSCAI 253 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 253 (347)
...++.|+|.+|+||||||..++... . ..-..++|++....++.. .+..++...+. ....+.++....+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~-~--~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANA-Q--AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH-H--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-H--hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45799999999999999999998765 2 122467888887766543 24445532211 1123445555555
Q ss_pred HHHhc-CCcEEEEEeCCCC
Q 038882 254 FKILS-NKKFVLLLDDVWE 271 (347)
Q Consensus 254 ~~~l~-~kr~LlVlDdv~~ 271 (347)
....+ .+.-+||+|.+..
T Consensus 132 ~~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHHTTTCCSEEEEECGGG
T ss_pred HHHHhcCCCCEEEEcChHh
Confidence 55543 3577999999854
No 96
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.12 E-value=0.0015 Score=58.65 Aligned_cols=94 Identities=11% Similarity=0.175 Sum_probs=58.6
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhcc-----------CCCC--CEEEEEEecCCCChHHHHHHHHHhcCCCCcc---
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHE-----------RHDF--DIVIWVVVSKDLNLEKVQEDIGKKIDLFSES--- 240 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-----------~~~f--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--- 240 (347)
...++.|+|.+|+|||+||..++...... .... ..++|++....++..++.. ++..++.....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 45799999999999999999988653110 0101 4788998888777776653 34555432110
Q ss_pred ----ccccChH---HHHHHHHHHhcC--CcEEEEEeCCCC
Q 038882 241 ----WKNKSLV---EKSCAIFKILSN--KKFVLLLDDVWE 271 (347)
Q Consensus 241 ----~~~~~~~---~~~~~l~~~l~~--kr~LlVlDdv~~ 271 (347)
....+.+ ++...+...++. +.-+||+|.+..
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 215 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS 215 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSH
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 1112222 244455566553 567999999853
No 97
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.12 E-value=0.00043 Score=69.47 Aligned_cols=163 Identities=12% Similarity=0.158 Sum_probs=75.4
Q ss_pred CcccchhhhHHHHHHHhhc-------------cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCCh
Q 038882 157 PRIIGQESIFDDVWRCIIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNL 223 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 223 (347)
..+.|.++..+.|.+.+.- ...+-+.++|++|+|||.||+.+++.. ... ++.++ .
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~~-----f~~v~----~ 544 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN-----FISIK----G 544 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TCE-----EEECC----H
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh---CCc-----eEEec----c
Confidence 4567887777777665432 124567899999999999999999876 222 22222 1
Q ss_pred HHHHHHHHHhcCCCCccccccChHHHHHHHHHHh-cCCcEEEEEeCCCCcc--------c--------ccccccCCC--C
Q 038882 224 EKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKIL-SNKKFVLLLDDVWEPV--------D--------LTKVGVPIP--N 284 (347)
Q Consensus 224 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~--------~--------~~~l~~~l~--~ 284 (347)
. +++... ...+... ...+.+.. +..+++|+||+++... + ...++..+. .
T Consensus 545 ~----~l~s~~-------vGese~~-vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~ 612 (806)
T 3cf2_A 545 P----ELLTMW-------FGESEAN-VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp H----HHHTTT-------CSSCHHH-HHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC
T ss_pred c----hhhccc-------cchHHHH-HHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC
Confidence 1 222211 1222333 33333333 4579999999996431 0 111111111 1
Q ss_pred CCCCcEEEEecCChhHH--hhc---CCCceeecCCCCHHHHHHHHhhhhC------hhhHHHHHHHhCCc
Q 038882 285 STNASKVLFTTRYKEVC--GKM---EAHKKLRVECLTADEAWMLFNVKVG------EDTIDKIFVKCCCH 343 (347)
Q Consensus 285 ~~~gs~iiiTtR~~~v~--~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~------~~~~~~I~~~~~G~ 343 (347)
...+--||-||...... ..+ .-...+.++.-+.++-.++|+..+. +-.+..|++.+.|.
T Consensus 613 ~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~ 682 (806)
T 3cf2_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGF 682 (806)
T ss_dssp SSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC-------------
T ss_pred CCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCC
Confidence 12233334455544321 111 2245677776666666777766542 22356667666664
No 98
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.09 E-value=0.0018 Score=54.74 Aligned_cols=116 Identities=18% Similarity=0.143 Sum_probs=61.4
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccc---------------
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESW--------------- 241 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--------------- 241 (347)
...++.|+|++|+|||||++.++... ... -..+.|+.... ....+...+. .++......
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~-~~~--~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 95 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKG-LRD--GDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEK 95 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHH-HHH--TCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC---
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH-HHC--CCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEecccccc
Confidence 34689999999999999999998765 211 12455655433 3444444332 333211100
Q ss_pred ------cccChHHHHHHHHHHhcC-CcE--EEEEeCCCCcc--c---ccccccCCCC--CCCCcEEEEecCCh
Q 038882 242 ------KNKSLVEKSCAIFKILSN-KKF--VLLLDDVWEPV--D---LTKVGVPIPN--STNASKVLFTTRYK 298 (347)
Q Consensus 242 ------~~~~~~~~~~~l~~~l~~-kr~--LlVlDdv~~~~--~---~~~l~~~l~~--~~~gs~iiiTtR~~ 298 (347)
...+..++...+...+.. ++- +||+|.+.... + ...+...+.. ...|..||++|...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 96 EDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp -CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred CceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 111444555555554432 344 99999986321 1 1112111111 12467888888765
No 99
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.08 E-value=0.0035 Score=52.83 Aligned_cols=94 Identities=18% Similarity=0.191 Sum_probs=52.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhc--cCC-CCCEEEEEEecCCCChHHHHHHHHHhcCCCCcc-------ccccCh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCH--ERH-DFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSES-------WKNKSL 246 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~--~~~-~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 246 (347)
...+++|+|++|+|||||++.++..... ... ....++|+.-........ +..+.+..+..... ....+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNS 102 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTSCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCCCHHHHhhcEEEEecCCh
Confidence 4579999999999999999999875411 011 234678877655444333 33444444432110 001111
Q ss_pred ---HHHHHHHHHHh------cCCcEEEEEeCCCC
Q 038882 247 ---VEKSCAIFKIL------SNKKFVLLLDDVWE 271 (347)
Q Consensus 247 ---~~~~~~l~~~l------~~kr~LlVlDdv~~ 271 (347)
......+...+ ..++-+||||....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 136 (231)
T 4a74_A 103 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 136 (231)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSH
T ss_pred HHHHHHHHHHHHHHHHhcccCCceeEEEECChHH
Confidence 11123333333 34778999999854
No 100
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.07 E-value=0.0023 Score=58.40 Aligned_cols=87 Identities=14% Similarity=0.138 Sum_probs=56.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCcc---ccccChHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSES---WKNKSLVEKSCAI 253 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 253 (347)
...++.|.|.+|+||||||..++... .. .-..++|++....++.. .+..++...+. ....+.++....+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~-~~--~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQA-QK--AGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH-HH--TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHH-HH--CCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHH
Confidence 45689999999999999999988765 21 22468899887766543 24445432111 1123455666666
Q ss_pred HHHhc-CCcEEEEEeCCCC
Q 038882 254 FKILS-NKKFVLLLDDVWE 271 (347)
Q Consensus 254 ~~~l~-~kr~LlVlDdv~~ 271 (347)
....+ .+.-+||+|.+..
T Consensus 145 ~~l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHHHTTTCCSEEEEECTTT
T ss_pred HHHHhcCCCCEEEEeChHH
Confidence 66654 3556999999854
No 101
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.99 E-value=0.0025 Score=54.61 Aligned_cols=26 Identities=27% Similarity=0.528 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||++.+..-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45799999999999999999997754
No 102
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.99 E-value=0.00063 Score=62.04 Aligned_cols=51 Identities=12% Similarity=0.098 Sum_probs=34.2
Q ss_pred HHHhhc-cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCC
Q 038882 170 WRCIIE-EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDL 221 (347)
Q Consensus 170 ~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~ 221 (347)
++.+.. .....++|+|.+|+|||||++.+.+........+.++ ++-+++..
T Consensus 165 ID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I-~~lIGER~ 216 (422)
T 3ice_A 165 LDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM-VLLIDERP 216 (422)
T ss_dssp HHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEE-EEEESSCH
T ss_pred eeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEE-EEEecCCh
Confidence 344433 4567999999999999999999887652222334443 56676543
No 103
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.99 E-value=0.0025 Score=58.00 Aligned_cols=87 Identities=17% Similarity=0.155 Sum_probs=55.0
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccc---cccChHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESW---KNKSLVEKSCAI 253 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 253 (347)
...++.|.|.+|+||||||..++... .. .-..++|++....++... +..++...+.. ...+.++....+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~-~~--~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAA-QR--EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH-HH--TTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HH--CCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHH
Confidence 45799999999999999999988766 21 223688998877666432 34454322111 122344444444
Q ss_pred HHHh-cCCcEEEEEeCCCC
Q 038882 254 FKIL-SNKKFVLLLDDVWE 271 (347)
Q Consensus 254 ~~~l-~~kr~LlVlDdv~~ 271 (347)
.... ..+.-+||+|.+..
T Consensus 134 ~~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHHHTCCSEEEEECGGG
T ss_pred HHHHhccCCCEEEEcCHHH
Confidence 4443 34566999999843
No 104
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.98 E-value=0.0044 Score=52.71 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||.+.++.-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999999998754
No 105
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.96 E-value=0.0011 Score=55.17 Aligned_cols=42 Identities=29% Similarity=0.373 Sum_probs=33.8
Q ss_pred chhhhHHHHHHHhhc---cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 161 GQESIFDDVWRCIIE---EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 161 GR~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.|++.++.|.+.+.. ....+++|.|.+|+|||||++.+....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 355677777777764 356799999999999999999998765
No 106
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.92 E-value=0.0055 Score=56.62 Aligned_cols=94 Identities=13% Similarity=0.133 Sum_probs=55.1
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhcc---CCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCcc-------ccccCh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHE---RHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSES-------WKNKSL 246 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 246 (347)
...++.|+|++|+|||||+..++-..... ...-..++|++....+....+ +.+++.++..... ....+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCCh
Confidence 45799999999999999999876433010 112356888887766655543 3466666542110 111222
Q ss_pred H---HHHHHHHHHh-cCCcEEEEEeCCCC
Q 038882 247 V---EKSCAIFKIL-SNKKFVLLLDDVWE 271 (347)
Q Consensus 247 ~---~~~~~l~~~l-~~kr~LlVlDdv~~ 271 (347)
. +....+...+ ..+.-+||+|.+..
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 2 2223333333 34678999999744
No 107
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.91 E-value=0.0035 Score=56.97 Aligned_cols=94 Identities=17% Similarity=0.235 Sum_probs=56.1
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCC----CEEEEEEecCCCChHHHHHHHHHhcCCCCcc----------cc
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDF----DIVIWVVVSKDLNLEKVQEDIGKKIDLFSES----------WK 242 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f----~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----------~~ 242 (347)
...++.|+|++|+|||||+..++... ...... ..++|++....+.... +..+++..+..... ..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~-~~~~~~Gg~~G~vi~i~~e~~~~~~~-i~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV-QLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTSCSCEEEEEESSSCCCHHH-HHHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-ccchhcCCCCCeEEEEeCCCCCCHHH-HHHHHHHcCCCHHHHhhCEEEEecCC
Confidence 56899999999999999999998765 111111 2458887766544333 33455544332110 00
Q ss_pred ccChHHHHHHHHHHhc------CCcEEEEEeCCCCc
Q 038882 243 NKSLVEKSCAIFKILS------NKKFVLLLDDVWEP 272 (347)
Q Consensus 243 ~~~~~~~~~~l~~~l~------~kr~LlVlDdv~~~ 272 (347)
.....++...+...+. .++-+||+|.+-..
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 1112233444555554 47889999998654
No 108
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.84 E-value=7.3e-05 Score=61.61 Aligned_cols=24 Identities=25% Similarity=0.138 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.++.|+|+.|+||||++..++.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999997777665
No 109
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.82 E-value=0.0051 Score=55.01 Aligned_cols=51 Identities=10% Similarity=0.152 Sum_probs=36.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGK 232 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 232 (347)
...++.|.|.+|+||||||..++... ..+. ..++|++.. .+..++...+..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~-a~~g--~~vl~~slE--~s~~~l~~R~~~ 117 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNM-SDND--DVVNLHSLE--MGKKENIKRLIV 117 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-HTTT--CEEEEEESS--SCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH-HHcC--CeEEEEECC--CCHHHHHHHHHH
Confidence 45799999999999999999998766 2222 577887765 345555555543
No 110
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.80 E-value=0.00089 Score=60.28 Aligned_cols=44 Identities=25% Similarity=0.364 Sum_probs=38.0
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+.++|+++.++.+...+..+ ..+.++|++|+|||+||+.+.+..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 46799999999988888764 468899999999999999998865
No 111
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.80 E-value=0.0014 Score=54.89 Aligned_cols=38 Identities=29% Similarity=0.376 Sum_probs=29.9
Q ss_pred hHHHHHHHhhc--cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 165 IFDDVWRCIIE--EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 165 ~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
-++.|.+.+.. +...+++|+|++|+|||||++.+....
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44555555543 456799999999999999999998876
No 112
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.78 E-value=0.0068 Score=53.67 Aligned_cols=85 Identities=16% Similarity=0.143 Sum_probs=45.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecC-CCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHH
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSK-DLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKI 256 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 256 (347)
..+++++|.+|+||||++..++... ..... ..+..+.... .....+.+.......+.+.. ...+...+...+. .
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l-~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~~~~~~~l~~al~-~ 179 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAIS-MLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLE--VCYTKEEFQQAKE-L 179 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHH-HHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCC--BCSSHHHHHHHHH-H
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeE--ecCCHHHHHHHHH-H
Confidence 4699999999999999999998876 32122 2344444432 22233334444444433211 1122333333333 2
Q ss_pred hcCCcEEEEEeC
Q 038882 257 LSNKKFVLLLDD 268 (347)
Q Consensus 257 l~~kr~LlVlDd 268 (347)
+ .+.=++|+|-
T Consensus 180 ~-~~~dlvIiDT 190 (296)
T 2px0_A 180 F-SEYDHVFVDT 190 (296)
T ss_dssp G-GGSSEEEEEC
T ss_pred h-cCCCEEEEeC
Confidence 3 3445777884
No 113
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.73 E-value=0.0014 Score=59.69 Aligned_cols=114 Identities=16% Similarity=0.161 Sum_probs=63.2
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHH
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFK 255 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 255 (347)
....+++|+|+.|+|||||.+.+.... ... ....+ +.+.++.... .. .....................+..
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~-~~~--~~~~i-~t~ed~~e~~--~~---~~~~~v~q~~~~~~~~~~~~~La~ 191 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYL-NNT--KYHHI-LTIEDPIEFV--HE---SKKCLVNQREVHRDTLGFSEALRS 191 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHH-HHH--CCCEE-EEEESSCCSC--CC---CSSSEEEEEEBTTTBSCHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc-cCC--CCcEE-EEccCcHHhh--hh---ccccceeeeeeccccCCHHHHHHH
Confidence 345699999999999999999998766 211 11222 1222211100 00 000000000001112234457888
Q ss_pred HhcCCcEEEEEeCCCCcccccccccCCCCCCCCcEEEEecCChhHH
Q 038882 256 ILSNKKFVLLLDDVWEPVDLTKVGVPIPNSTNASKVLFTTRYKEVC 301 (347)
Q Consensus 256 ~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~ 301 (347)
.|...+=+|++|++-+.+.+..+... ...|..||+||...+..
T Consensus 192 aL~~~PdvillDEp~d~e~~~~~~~~---~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 192 ALREDPDIILVGEMRDLETIRLALTA---AETGHLVFGTLHTTSAA 234 (356)
T ss_dssp HTTSCCSEEEESCCCSHHHHHHHHHH---HHTTCEEEEEESCSSHH
T ss_pred HhhhCcCEEecCCCCCHHHHHHHHHH---HhcCCEEEEEEccChHH
Confidence 88899999999999765554443222 22466688888876543
No 114
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.71 E-value=0.00095 Score=60.37 Aligned_cols=46 Identities=26% Similarity=0.450 Sum_probs=35.5
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..++|.+.....+...+......-+.|+|++|+|||+||+.+++..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 4589998866665554444344558999999999999999999875
No 115
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.70 E-value=0.0049 Score=52.54 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=32.4
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQED 229 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 229 (347)
...++.|.|.+|+|||||+..++..... .-..++|++... ...++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~--~~~~~~~~ 69 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEE--HPVQVRQN 69 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSS--CHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccC--CHHHHHHH
Confidence 4568999999999999999888766511 223567776544 34444433
No 116
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.66 E-value=0.0011 Score=53.25 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.+|.|.|++|+||||+++.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998876
No 117
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.65 E-value=0.0059 Score=57.27 Aligned_cols=92 Identities=18% Similarity=0.329 Sum_probs=51.2
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCC-ChHHHHHHHHHhcCCCCc----cccccChHH---
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDL-NLEKVQEDIGKKIDLFSE----SWKNKSLVE--- 248 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~~--- 248 (347)
....++|+|.+|+|||||++.+.... ... .-+.++++.+.+.. ...++++++...-..... .....+...
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~~-~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~ 227 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHNI-AQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMR 227 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHH-HHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHH
T ss_pred cCCEEEEECCCCCCccHHHHHHHhhh-hhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHH
Confidence 34578999999999999999998876 221 22344666666543 344555545432000000 000111111
Q ss_pred ---HHHHHHHHh---cCCcEEEEEeCCC
Q 038882 249 ---KSCAIFKIL---SNKKFVLLLDDVW 270 (347)
Q Consensus 249 ---~~~~l~~~l---~~kr~LlVlDdv~ 270 (347)
..-.+.+++ ++++.||++||+.
T Consensus 228 ~~~~~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 228 VALTGLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEEEECTH
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 112334443 5789999999993
No 118
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.65 E-value=0.0014 Score=62.52 Aligned_cols=44 Identities=11% Similarity=0.179 Sum_probs=37.8
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+.++|+++.++.+...+..+ ..+.++|++|+|||+||+.+++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH
Confidence 45799999999888887765 478899999999999999998865
No 119
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.64 E-value=0.0011 Score=53.76 Aligned_cols=24 Identities=29% Similarity=0.482 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.+|.|.|++|+||||+++.+....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999998875
No 120
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.59 E-value=0.0014 Score=53.78 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=22.0
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (347)
...+++|+|++|+|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3578999999999999999999764
No 121
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.59 E-value=0.0012 Score=53.03 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.+|.|.|++|+||||+|+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47899999999999999999 443
No 122
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.56 E-value=0.0015 Score=54.23 Aligned_cols=26 Identities=46% Similarity=0.396 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+|.|+|++|+||||+++.+....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999998876
No 123
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.54 E-value=0.002 Score=58.88 Aligned_cols=45 Identities=31% Similarity=0.292 Sum_probs=36.7
Q ss_pred cccchhhhHHHHHHHhhc---------------cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 158 RIIGQESIFDDVWRCIIE---------------EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 158 ~~vGR~~~~~~l~~~L~~---------------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.++|.+..++.+...+.. .....+.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999888888887731 134678999999999999999999875
No 124
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.51 E-value=0.002 Score=53.46 Aligned_cols=27 Identities=37% Similarity=0.458 Sum_probs=24.4
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
....+|.|+|++|+|||||++.+....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999998876
No 125
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.51 E-value=0.0017 Score=53.96 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=23.3
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
....+++|+|++|+|||||++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345799999999999999999998765
No 126
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.50 E-value=0.0032 Score=53.05 Aligned_cols=38 Identities=29% Similarity=0.393 Sum_probs=29.7
Q ss_pred hHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 165 IFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 165 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+.+...+.......|.|+|.+|+|||||+..+....
T Consensus 25 ~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 25 LADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34444455555567899999999999999999998875
No 127
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.50 E-value=0.015 Score=51.21 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=23.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|.|.+|+|||||++.++...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998876
No 128
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.49 E-value=0.0014 Score=52.88 Aligned_cols=24 Identities=42% Similarity=0.494 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.+|+|+|++|+|||||++.+....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998865
No 129
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.48 E-value=0.013 Score=54.94 Aligned_cols=100 Identities=18% Similarity=0.279 Sum_probs=61.2
Q ss_pred HHHHhhc-cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCC-ChHHHHHHHHHhcCCC------Cc-
Q 038882 169 VWRCIIE-EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDL-NLEKVQEDIGKKIDLF------SE- 239 (347)
Q Consensus 169 l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~------~~- 239 (347)
.++.|.. .....++|.|.+|+|||+|+..+.+.. . +.+-+.++++-+.+.. ...++++++...=... ..
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~-~-~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtv 220 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV-A-KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVA 220 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHT-T-TTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEE
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHHhh-H-hhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEE
Confidence 3444444 456789999999999999999998875 1 2344667778787764 3566667776542211 00
Q ss_pred ---cccccChH------HHHHHHHHHh---cCCcEEEEEeCCC
Q 038882 240 ---SWKNKSLV------EKSCAIFKIL---SNKKFVLLLDDVW 270 (347)
Q Consensus 240 ---~~~~~~~~------~~~~~l~~~l---~~kr~LlVlDdv~ 270 (347)
...+.+.. .....+.+++ +++..||++||+.
T Consensus 221 vV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsit 263 (482)
T 2ck3_D 221 LVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF 263 (482)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 00111111 1223344444 4689999999983
No 130
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.47 E-value=0.0028 Score=58.08 Aligned_cols=46 Identities=28% Similarity=0.294 Sum_probs=36.0
Q ss_pred CcccchhhhHHHHHHHhhc------------------------------cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 157 PRIIGQESIFDDVWRCIIE------------------------------EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~------------------------------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..++|.+..++.|...+.. .....+.++|++|+|||++|+.+++..
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4578988888888776621 123568999999999999999999865
No 131
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.47 E-value=0.0017 Score=52.49 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHH
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNN 200 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~ 200 (347)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999976
No 132
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.45 E-value=0.0018 Score=52.83 Aligned_cols=25 Identities=36% Similarity=0.333 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.+.|.|+|++|+||||+++.+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998875
No 133
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.44 E-value=0.002 Score=52.69 Aligned_cols=24 Identities=38% Similarity=0.475 Sum_probs=22.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.+|.|.|++|+||||+++.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999876
No 134
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.44 E-value=0.0018 Score=52.80 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+++|+|++|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998765
No 135
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.44 E-value=0.021 Score=51.29 Aligned_cols=27 Identities=41% Similarity=0.489 Sum_probs=24.2
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
....+++|+|+.|+||||+++.++...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999998876
No 136
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.41 E-value=0.01 Score=52.72 Aligned_cols=90 Identities=17% Similarity=0.143 Sum_probs=48.4
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChH--HHHHHHHHhcCCCCc-cccccChHHH-HHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLE--KVQEDIGKKIDLFSE-SWKNKSLVEK-SCA 252 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~--~~~~~i~~~l~~~~~-~~~~~~~~~~-~~~ 252 (347)
...++.|+|++|+||||++..++... ... -..+.++.... +... +-+...+...+.+.- .....+.... ...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l-~~~--g~kV~lv~~D~-~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF-VDE--GKSVVLAAADT-FRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH-HHT--TCCEEEEEECT-TCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH-Hhc--CCEEEEEcccc-ccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 35799999999999999999999877 322 12344444432 2221 122334444432110 0011222222 223
Q ss_pred HHHHhcCCcEEEEEeCCC
Q 038882 253 IFKILSNKKFVLLLDDVW 270 (347)
Q Consensus 253 l~~~l~~kr~LlVlDdv~ 270 (347)
+...+..+.-++|+|..-
T Consensus 179 l~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 179 VAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHHTTCSEEEEEECC
T ss_pred HHHHHhcCCCEEEEECCC
Confidence 444455556688889763
No 137
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.41 E-value=0.0034 Score=52.67 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=32.7
Q ss_pred chhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 161 GQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 161 GR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+.++..+.+...+......++.|+|.+|+|||||+..+....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 13 ENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 334455555565555678899999999999999999998775
No 138
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.39 E-value=0.0023 Score=52.34 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=23.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+|.|.|++|+||||+++.+....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999876
No 139
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.38 E-value=0.0025 Score=52.25 Aligned_cols=25 Identities=36% Similarity=0.410 Sum_probs=22.5
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+|.|.|++|+||||+++.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998765
No 140
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.38 E-value=0.12 Score=48.61 Aligned_cols=91 Identities=8% Similarity=0.060 Sum_probs=54.3
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHH-hcCCCC-----------------
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGK-KIDLFS----------------- 238 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~-~l~~~~----------------- 238 (347)
...++.|.|.+|+|||||+..++... ... .-..++|++... +..++...++. ..+...
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~-~~~-~g~~Vl~~s~E~--s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~ 277 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNV-ATK-TNENVAIFSLEM--SAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLT 277 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHH-HHH-SSCCEEEEESSS--CHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH-HHh-CCCcEEEEECCC--CHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHH
Confidence 45699999999999999999998876 221 112567766543 34455544432 111100
Q ss_pred -------------ccccccChHHHHHHHHHHhc-CCcEEEEEeCCCC
Q 038882 239 -------------ESWKNKSLVEKSCAIFKILS-NKKFVLLLDDVWE 271 (347)
Q Consensus 239 -------------~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~ 271 (347)
......+..++...++.... .+.-+||+|.+..
T Consensus 278 ~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~ 324 (454)
T 2r6a_A 278 MAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQL 324 (454)
T ss_dssp HHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGG
T ss_pred HHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHH
Confidence 00112355666666666553 3567999998743
No 141
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.38 E-value=0.025 Score=50.55 Aligned_cols=43 Identities=23% Similarity=0.284 Sum_probs=30.1
Q ss_pred cchhhhHHHHHHHhhcc----CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 160 IGQESIFDDVWRCIIEE----QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 160 vGR~~~~~~l~~~L~~~----~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+|-...+..+...+... ...+|+|.|+.|+|||||++.+....
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44444444444444332 34599999999999999999998766
No 142
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.38 E-value=0.0017 Score=53.87 Aligned_cols=25 Identities=24% Similarity=0.411 Sum_probs=22.5
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+|.|.|++|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998875
No 143
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.35 E-value=0.0026 Score=51.35 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+++|+|++|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 144
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.34 E-value=0.0022 Score=53.16 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998764
No 145
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.34 E-value=0.025 Score=52.75 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=23.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+|.++|.+|+||||++..++...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 36899999999999999999998876
No 146
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.31 E-value=0.0024 Score=52.22 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=22.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.+|.|.|++|+||||+++.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998876
No 147
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.30 E-value=0.0023 Score=52.03 Aligned_cols=25 Identities=52% Similarity=0.530 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...|.|+|++|+||||+++.+....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4678899999999999999998775
No 148
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.29 E-value=0.0026 Score=51.90 Aligned_cols=23 Identities=48% Similarity=0.678 Sum_probs=21.2
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.++|+|++|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999876
No 149
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.28 E-value=0.0054 Score=55.41 Aligned_cols=43 Identities=23% Similarity=0.357 Sum_probs=31.0
Q ss_pred cchhhhHHHHHHHhh----ccCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 160 IGQESIFDDVWRCII----EEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 160 vGR~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
++-+.-.+.+++.+. .+....|.|+|++|+||||+++.++...
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 334444555555553 3456679999999999999999888765
No 150
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.28 E-value=0.0026 Score=51.03 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+|+|.|++|+||||+++.+....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998875
No 151
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.25 E-value=0.0027 Score=51.98 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCchHHHHHHHHH
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNN 200 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~ 200 (347)
.+++|+|++|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 152
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.24 E-value=0.0025 Score=53.28 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|++|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998765
No 153
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.24 E-value=0.0022 Score=52.57 Aligned_cols=24 Identities=42% Similarity=0.559 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998765
No 154
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.24 E-value=0.0023 Score=53.28 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=22.6
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+|.|+|++|+|||||++.+....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999998765
No 155
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.24 E-value=0.017 Score=53.64 Aligned_cols=25 Identities=32% Similarity=0.256 Sum_probs=22.8
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..++.++|.+|+||||++..++...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999999877
No 156
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.23 E-value=0.0024 Score=51.64 Aligned_cols=24 Identities=38% Similarity=0.454 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..|.|.|++|+||||+|+.+....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999998876
No 157
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.22 E-value=0.025 Score=53.20 Aligned_cols=98 Identities=17% Similarity=0.308 Sum_probs=61.9
Q ss_pred HHhhc-cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCC-hHHHHHHHHHhcCCC-------Ccc-
Q 038882 171 RCIIE-EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLN-LEKVQEDIGKKIDLF-------SES- 240 (347)
Q Consensus 171 ~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~- 240 (347)
+.|.. .....++|.|.+|+|||+|+..+.+.. . +.+-+.++++-+.+... ..++.+++...=... ...
T Consensus 157 D~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~-a-~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvv 234 (498)
T 1fx0_B 157 NLLAPYRRGGKIGLFGGAGVGKTVLIMELINNI-A-KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVAL 234 (498)
T ss_dssp HHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHT-T-TTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEE
T ss_pred eeecccccCCeEEeecCCCCCchHHHHHHHHHH-H-hhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEE
Confidence 44433 356789999999999999999998875 1 23456778888877654 566677776532111 000
Q ss_pred ---ccccC------hHHHHHHHHHHhc---CCcEEEEEeCCC
Q 038882 241 ---WKNKS------LVEKSCAIFKILS---NKKFVLLLDDVW 270 (347)
Q Consensus 241 ---~~~~~------~~~~~~~l~~~l~---~kr~LlVlDdv~ 270 (347)
..+.+ .......+.++++ ++..||++||+.
T Consensus 235 V~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 235 VYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp EEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 00111 1223344566665 479999999983
No 158
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.21 E-value=0.003 Score=54.64 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.++.|.|++|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999998875
No 159
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.21 E-value=0.0029 Score=52.28 Aligned_cols=23 Identities=35% Similarity=0.702 Sum_probs=21.4
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.|+|.|++|+||||+++.+....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999876
No 160
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.20 E-value=0.0043 Score=57.98 Aligned_cols=46 Identities=28% Similarity=0.321 Sum_probs=36.8
Q ss_pred CcccchhhhHHHHHHHhhcc--------------CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 157 PRIIGQESIFDDVWRCIIEE--------------QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~--------------~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..++|.++..+.|...+... ..+-+.++|++|+|||++|+.++...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 46789888888887666331 24568999999999999999999876
No 161
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.20 E-value=0.0033 Score=51.65 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=22.7
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+|.|.|++|+||||+++.+....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 162
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.19 E-value=0.0033 Score=51.46 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+|.|.|++|+||||+|+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3679999999999999999998765
No 163
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.19 E-value=0.0033 Score=52.44 Aligned_cols=26 Identities=38% Similarity=0.530 Sum_probs=23.3
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998875
No 164
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.19 E-value=0.0058 Score=53.95 Aligned_cols=54 Identities=19% Similarity=0.106 Sum_probs=33.9
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhhhccCC-CCCEEEEEEecCCCChHHHHHHH
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERH-DFDIVIWVVVSKDLNLEKVQEDI 230 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-~f~~~~wv~vs~~~~~~~~~~~i 230 (347)
....+|+|+|..|+|||||++.+.... .... ....+..|+...-+-.......+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l-~~~g~~~~~~~iv~~D~f~~~~~~~~~l 83 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL-MEKYGGEKSIGYASIDDFYLTHEDQLKL 83 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH-HHHHGGGSCEEEEEGGGGBCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh-hhcCCCCceEEEeccccccCChHHHHHH
Confidence 356799999999999999999998876 2211 12334444554433333444444
No 165
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.18 E-value=0.003 Score=52.38 Aligned_cols=25 Identities=36% Similarity=0.395 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+++|+|++|+|||||++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998754
No 166
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.18 E-value=0.0056 Score=53.95 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998764
No 167
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.17 E-value=0.027 Score=52.48 Aligned_cols=26 Identities=38% Similarity=0.281 Sum_probs=23.4
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+|.++|.+|+||||++..++...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35899999999999999999998776
No 168
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.17 E-value=0.002 Score=52.87 Aligned_cols=24 Identities=42% Similarity=0.559 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+.|.|+|++|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 568899999999999999998764
No 169
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.15 E-value=0.0034 Score=51.27 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (347)
...|.|+|++|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999876
No 170
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.15 E-value=0.0027 Score=51.76 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998865
No 171
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.15 E-value=0.0037 Score=50.89 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...|.+.|++|+||||+++.+....
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998765
No 172
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.14 E-value=0.0032 Score=53.10 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.+|+|+|++|+||||+++.+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998765
No 173
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.14 E-value=0.0028 Score=52.56 Aligned_cols=25 Identities=40% Similarity=0.506 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.++++|+|+.|+|||||++.+...+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3688999999999999999998765
No 174
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.12 E-value=0.0039 Score=51.85 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=22.4
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.+|.|.|++|+||||+++.+....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999876
No 175
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.11 E-value=0.021 Score=51.39 Aligned_cols=90 Identities=12% Similarity=0.048 Sum_probs=55.7
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCC--------------------
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDL-------------------- 236 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~-------------------- 236 (347)
...++.|.|.+|+||||||..++... .. .-..++|++.. .+..++...++.....
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~-a~--~g~~Vl~fSlE--ms~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~ 119 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSA-LN--DDRGVAVFSLE--MSAEQLALRALSDLTSINMHDLESGRLDDDQWENLA 119 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHH-HH--TTCEEEEEESS--SCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH-HH--cCCeEEEEeCC--CCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHH
Confidence 34689999999999999999998876 22 22466776653 3455555555432100
Q ss_pred -----------CCccccccChHHHHHHHHHHhcC--CcEEEEEeCCCC
Q 038882 237 -----------FSESWKNKSLVEKSCAIFKILSN--KKFVLLLDDVWE 271 (347)
Q Consensus 237 -----------~~~~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~ 271 (347)
.-......+..++...++...+. +.-+||+|-+..
T Consensus 120 ~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLql 167 (338)
T 4a1f_A 120 KCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQL 167 (338)
T ss_dssp HHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEEC
T ss_pred HHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHH
Confidence 00011223566666666665543 578999997743
No 176
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.11 E-value=0.023 Score=53.63 Aligned_cols=26 Identities=35% Similarity=0.494 Sum_probs=23.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|.+|+|||||++.++..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 45799999999999999999998876
No 177
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.10 E-value=0.0041 Score=52.39 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=23.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..++|.|.|++|+||||.|+.+...+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999876
No 178
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.09 E-value=0.0038 Score=51.40 Aligned_cols=25 Identities=36% Similarity=0.422 Sum_probs=22.7
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+|.|.|++|+||||+|+.+....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 179
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.09 E-value=0.032 Score=52.06 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=23.4
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..++|.++|.+|+||||++..++...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998877
No 180
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.09 E-value=0.0035 Score=52.01 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHH
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNN 200 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~ 200 (347)
.+|+|+|++|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999976
No 181
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.09 E-value=0.0031 Score=50.91 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=19.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLN 199 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~ 199 (347)
...+++|+|++|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 45789999999999999999643
No 182
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.07 E-value=0.0038 Score=53.59 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=22.6
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+++|+|++|+|||||++.+...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998665
No 183
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.07 E-value=0.021 Score=50.46 Aligned_cols=25 Identities=36% Similarity=0.331 Sum_probs=22.7
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..++.++|.+|+||||++..++...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999998876
No 184
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.05 E-value=0.014 Score=63.95 Aligned_cols=87 Identities=16% Similarity=0.135 Sum_probs=56.4
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCcc---ccccChHHHHHH
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSES---WKNKSLVEKSCA 252 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~ 252 (347)
...+.+.|+|++|+|||+||.++.... ..+=..+.|+++...++... +..++..-+. ....+.++....
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea---~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~ 1496 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEI 1496 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHH---HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHH
Confidence 356899999999999999999998865 23334577888777766555 3344421111 011233444555
Q ss_pred HHHHhc-CCcEEEEEeCCC
Q 038882 253 IFKILS-NKKFVLLLDDVW 270 (347)
Q Consensus 253 l~~~l~-~kr~LlVlDdv~ 270 (347)
+....+ .+.-+||+|.+.
T Consensus 1497 ~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1497 CDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHHTCCSEEEESCGG
T ss_pred HHHHHhcCCCCEEEEcChh
Confidence 555543 577899999994
No 185
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.04 E-value=0.0034 Score=50.46 Aligned_cols=24 Identities=38% Similarity=0.436 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998865
No 186
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.04 E-value=0.0042 Score=51.42 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+|+|.|++|+||||+++.+....
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35789999999999999999998764
No 187
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.04 E-value=0.0045 Score=50.57 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+|.|.|++|+||||+++.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998765
No 188
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.02 E-value=0.0029 Score=51.39 Aligned_cols=25 Identities=40% Similarity=0.499 Sum_probs=18.2
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999998765
No 189
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.00 E-value=0.0042 Score=51.42 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..++++|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998765
No 190
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.99 E-value=0.0062 Score=52.55 Aligned_cols=26 Identities=35% Similarity=0.358 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+|.|+|++|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998765
No 191
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.99 E-value=0.009 Score=53.74 Aligned_cols=107 Identities=12% Similarity=0.097 Sum_probs=59.1
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHHh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKIL 257 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 257 (347)
...++|+|+.|+|||||++.+.... ..-...+.+.-......... -+.++. ... ........+...|
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~----~~~~g~i~i~~~~e~~~~~~----~~~i~~----~~g-gg~~~r~~la~aL 237 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFI----PKEERIISIEDTEEIVFKHH----KNYTQL----FFG-GNITSADCLKSCL 237 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGS----CTTSCEEEEESSCCCCCSSC----SSEEEE----ECB-TTBCHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC----cCCCcEEEECCeeccccccc----hhEEEE----EeC-CChhHHHHHHHHh
Confidence 4689999999999999999998765 22345555542221110000 000000 000 2233445667778
Q ss_pred cCCcEEEEEeCCCCcccccccccCCCCCCCCcEEEEecCChhH
Q 038882 258 SNKKFVLLLDDVWEPVDLTKVGVPIPNSTNASKVLFTTRYKEV 300 (347)
Q Consensus 258 ~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v 300 (347)
..++=+|++|++-+.+.++.+ ..+.. .+.-+|+||.....
T Consensus 238 ~~~p~ilildE~~~~e~~~~l-~~~~~--g~~tvi~t~H~~~~ 277 (330)
T 2pt7_A 238 RMRPDRIILGELRSSEAYDFY-NVLCS--GHKGTLTTLHAGSS 277 (330)
T ss_dssp TSCCSEEEECCCCSTHHHHHH-HHHHT--TCCCEEEEEECSSH
T ss_pred hhCCCEEEEcCCChHHHHHHH-HHHhc--CCCEEEEEEcccHH
Confidence 888889999999765444333 22221 12236777765543
No 192
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.98 E-value=0.004 Score=51.72 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCchHHHHHHHHH
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNN 200 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~ 200 (347)
.+|+|+|++|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999965
No 193
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.97 E-value=0.0043 Score=51.71 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||++.+....
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45799999999999999999998765
No 194
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.97 E-value=0.005 Score=50.80 Aligned_cols=24 Identities=38% Similarity=0.493 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCchHHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNN 200 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~ 200 (347)
...+|+|.|+.|+||||+++.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999975
No 195
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.97 E-value=0.024 Score=50.07 Aligned_cols=89 Identities=17% Similarity=0.082 Sum_probs=46.5
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCC-hHHHHHHHHHhcCCCCcc-ccccChHHHHH-HHH
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLN-LEKVQEDIGKKIDLFSES-WKNKSLVEKSC-AIF 254 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~-~l~ 254 (347)
..+++++|.+|+||||++..++... ... -..+.++....... ....+.......+.+.-. ....++.++.. .+.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~-~~~--~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYY-KGK--GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH-HHT--TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HHc--CCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 4789999999999999999999877 222 12344444432211 111123333433332110 01223444433 333
Q ss_pred HHhcCCcEEEEEeCC
Q 038882 255 KILSNKKFVLLLDDV 269 (347)
Q Consensus 255 ~~l~~kr~LlVlDdv 269 (347)
.....+.=++|+|--
T Consensus 175 ~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHTCCEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 333345557888876
No 196
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.96 E-value=0.0045 Score=51.25 Aligned_cols=25 Identities=36% Similarity=0.359 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...|.|.|++|+||||+|+.+....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998865
No 197
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.95 E-value=0.0046 Score=51.43 Aligned_cols=25 Identities=48% Similarity=0.626 Sum_probs=22.0
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+|+|+|++|+||||+++.+....
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999997643
No 198
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.95 E-value=0.0047 Score=50.54 Aligned_cols=23 Identities=43% Similarity=0.583 Sum_probs=21.2
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+|+|.|++|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998865
No 199
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.94 E-value=0.0048 Score=49.33 Aligned_cols=23 Identities=35% Similarity=0.258 Sum_probs=21.1
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998865
No 200
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.94 E-value=0.0051 Score=51.18 Aligned_cols=25 Identities=32% Similarity=0.221 Sum_probs=22.7
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+|+|.|++|+||||+++.+....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998876
No 201
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.93 E-value=0.0068 Score=50.33 Aligned_cols=37 Identities=8% Similarity=0.111 Sum_probs=27.8
Q ss_pred HHHHHHHhhc-cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 166 FDDVWRCIIE-EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 166 ~~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+..+..++.. +....+.|+|++|+||||+|..+++..
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4555555543 223479999999999999999998876
No 202
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.92 E-value=0.0055 Score=48.85 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=23.8
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
....+++|+|+.|+|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 355799999999999999999998865
No 203
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.91 E-value=0.01 Score=50.83 Aligned_cols=26 Identities=31% Similarity=0.268 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
....|.|.|++|+||||+|+.+...+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 204
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.91 E-value=0.0051 Score=53.32 Aligned_cols=25 Identities=44% Similarity=0.558 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+|.|.|++|+||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998864
No 205
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.91 E-value=0.01 Score=48.56 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=21.2
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.|+|.|+.|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998876
No 206
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.90 E-value=0.0054 Score=51.12 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=22.8
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+|.|.|++|+||||+++.+....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 207
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.87 E-value=0.0052 Score=51.41 Aligned_cols=23 Identities=39% Similarity=0.416 Sum_probs=20.7
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.|.|.|++|+||||+|+.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 208
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.85 E-value=0.0044 Score=52.20 Aligned_cols=26 Identities=38% Similarity=0.603 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35789999999999999999998754
No 209
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.84 E-value=0.039 Score=50.36 Aligned_cols=52 Identities=17% Similarity=0.168 Sum_probs=35.4
Q ss_pred HHHHHhhc-cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCC
Q 038882 168 DVWRCIIE-EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKD 220 (347)
Q Consensus 168 ~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 220 (347)
..++.+.. .....++|+|.+|+|||+|+..+.+........+.+ +++-+++.
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDER 216 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCC
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccC
Confidence 44555555 456789999999999999999998876211233433 45666554
No 210
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.84 E-value=0.0058 Score=52.41 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+|+|.|+.|+|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998764
No 211
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.82 E-value=0.045 Score=48.60 Aligned_cols=26 Identities=35% Similarity=0.365 Sum_probs=23.3
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+|+|+|+.|+|||||++.+....
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998865
No 212
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.81 E-value=0.0059 Score=51.32 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...|.|.|++|+||||+++.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999998876
No 213
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.80 E-value=0.0055 Score=51.81 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...|.|.|++|+||||+++.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999998765
No 214
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.80 E-value=0.0065 Score=50.13 Aligned_cols=26 Identities=38% Similarity=0.549 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+|+|+|+.|+||||+++.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 56899999999999999999998763
No 215
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.79 E-value=0.0058 Score=54.54 Aligned_cols=27 Identities=37% Similarity=0.400 Sum_probs=24.0
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
....+++|+|+.|+|||||++.+....
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 346799999999999999999998876
No 216
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.77 E-value=0.0088 Score=49.92 Aligned_cols=27 Identities=33% Similarity=0.378 Sum_probs=23.9
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
....+|.|.|++|+||||+++.+....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 445789999999999999999998876
No 217
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.77 E-value=0.0059 Score=51.52 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||.+.+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 35799999999999999999998865
No 218
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.76 E-value=0.0057 Score=51.20 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.4
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.|+|.|++|+||||+|+.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 219
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.76 E-value=0.017 Score=51.71 Aligned_cols=26 Identities=38% Similarity=0.562 Sum_probs=23.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|.+|+||||++..++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998876
No 220
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.76 E-value=0.0035 Score=52.31 Aligned_cols=23 Identities=35% Similarity=0.702 Sum_probs=21.4
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+|+|.|+.|+||||+++.+...+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998876
No 221
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.73 E-value=0.006 Score=52.63 Aligned_cols=26 Identities=38% Similarity=0.526 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+|+|+|+.|+||||+++.+....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34699999999999999999998654
No 222
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.72 E-value=0.006 Score=51.35 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=22.5
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...|.|.|++|+||||+++.+...+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998876
No 223
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.71 E-value=0.031 Score=52.37 Aligned_cols=50 Identities=10% Similarity=0.106 Sum_probs=34.3
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIG 231 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 231 (347)
...++.|.|.+|+||||||.+++... ... -..++|++... +..++...++
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~-a~~--g~~vl~fSlEm--s~~ql~~R~~ 245 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNM-SDN--DDVVNLHSLEM--GKKENIKRLI 245 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHH-HHT--TCEEEEECSSS--CTTHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHH-HHc--CCEEEEEECCC--CHHHHHHHHH
Confidence 45689999999999999999998876 222 23677776543 3344444433
No 224
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.71 E-value=0.0061 Score=50.34 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=22.0
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...|+|.|++|+||||+++.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998754
No 225
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.69 E-value=0.0071 Score=51.60 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||++.+..-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45799999999999999999997654
No 226
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.69 E-value=0.088 Score=50.02 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=22.2
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..++|.|+|.+|+||||++..++...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998766
No 227
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.67 E-value=0.0082 Score=48.59 Aligned_cols=25 Identities=36% Similarity=0.380 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+|.|.|+.|+||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999998865
No 228
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.66 E-value=0.0061 Score=50.15 Aligned_cols=24 Identities=42% Similarity=0.538 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.+++|+|+.|+|||||++.++...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999998876
No 229
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.64 E-value=0.0093 Score=58.33 Aligned_cols=44 Identities=25% Similarity=0.351 Sum_probs=37.5
Q ss_pred CcccchhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 157 PRIIGQESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..++|.+..++.+...+..+ ..+.|+|++|+||||||+.++...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 45799998888887777665 588999999999999999999865
No 230
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.63 E-value=0.014 Score=52.07 Aligned_cols=41 Identities=22% Similarity=0.382 Sum_probs=30.1
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecC
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSK 219 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 219 (347)
++.++|+|.|-||+||||.+.++.--. .... ..+.-|.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aL-A~~G--kkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAF-SILG--KRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH-HHTT--CCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHH-HHCC--CeEEEEecCC
Confidence 467999999999999999999988776 2222 2456666654
No 231
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.63 E-value=0.038 Score=53.71 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|.|||||++.+..-+
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56799999999999999999998755
No 232
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.62 E-value=0.0067 Score=51.78 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCchHHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNN 200 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~ 200 (347)
...+++|+|++|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 457999999999999999999884
No 233
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.61 E-value=0.0081 Score=48.39 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=22.9
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.+++.|.|..|+|||||+..+....
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 5789999999999999999998876
No 234
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.61 E-value=0.0083 Score=50.78 Aligned_cols=26 Identities=35% Similarity=0.413 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||.+.++.-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45699999999999999999997654
No 235
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.61 E-value=0.0082 Score=51.69 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+|+|.|++|+||||+|+.+....
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 236
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.60 E-value=0.0098 Score=50.92 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=23.0
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.. .+++|+|+.|+|||||.+.+..-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 36 799999999999999999998754
No 237
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.56 E-value=0.0083 Score=50.09 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=21.1
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+|.|.|++|+||+|.|+.+...+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999876
No 238
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.53 E-value=0.0086 Score=53.20 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=23.3
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|++|+|||||++.++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 35799999999999999999998776
No 239
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=95.52 E-value=0.023 Score=52.87 Aligned_cols=93 Identities=12% Similarity=0.186 Sum_probs=54.1
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccC-CCCC-EEEEEEecCCC-ChHHHHHHHHHhcCCCCc----cccccChH--
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHER-HDFD-IVIWVVVSKDL-NLEKVQEDIGKKIDLFSE----SWKNKSLV-- 247 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~~f~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~-- 247 (347)
....++|.|..|+|||+|+.++.+.. ... ++-+ .++++-+.+.. ...++.+++...=..... ...+.+..
T Consensus 150 rGQr~~Ifgg~G~GKt~L~~~Ia~~~-~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r 228 (465)
T 3vr4_D 150 RGQKLPVFSGSGLPHKELAAQIARQA-TVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIER 228 (465)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHC-BCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHH
T ss_pred cCCEEEEeCCCCcChHHHHHHHHHHH-HhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHH
Confidence 45668899999999999999998875 221 1122 55677676653 455666665442101000 00111111
Q ss_pred ----HHHHHHHHHhc---CCcEEEEEeCCC
Q 038882 248 ----EKSCAIFKILS---NKKFVLLLDDVW 270 (347)
Q Consensus 248 ----~~~~~l~~~l~---~kr~LlVlDdv~ 270 (347)
.....+.++++ ++..||++||+-
T Consensus 229 ~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 229 IATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 12234556654 689999999983
No 240
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.49 E-value=0.009 Score=52.24 Aligned_cols=26 Identities=35% Similarity=0.652 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||++.+..-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45799999999999999999997644
No 241
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.49 E-value=0.0052 Score=52.11 Aligned_cols=26 Identities=31% Similarity=0.311 Sum_probs=17.0
Q ss_pred CceEEEEEeCCCCchHHHHHHHH-Hhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLN-NKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~-~~~ 202 (347)
...+++|+|+.|+|||||++.+. ...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34689999999999999999998 543
No 242
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.48 E-value=0.0092 Score=50.08 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..|.|.|++|+||||+|+.+...+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 568899999999999999998876
No 243
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.48 E-value=0.0093 Score=49.86 Aligned_cols=23 Identities=35% Similarity=0.252 Sum_probs=20.7
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 244
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.48 E-value=0.0093 Score=51.79 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||++.+..-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45799999999999999999997654
No 245
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.47 E-value=0.0076 Score=51.95 Aligned_cols=25 Identities=36% Similarity=0.317 Sum_probs=22.8
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...|.|+|++|+||||+++.+....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998866
No 246
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.46 E-value=0.068 Score=50.88 Aligned_cols=51 Identities=16% Similarity=0.116 Sum_probs=35.6
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIG 231 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 231 (347)
...++.|.|.+|+|||+||.+++... ... +=..++|++... +..++...++
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~-a~~-~g~~vl~~s~E~--s~~~l~~r~~ 291 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQW-GTA-MGKKVGLAMLEE--SVEETAEDLI 291 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHH-TTT-SCCCEEEEESSS--CHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHH-HHh-cCCcEEEEeccC--CHHHHHHHHH
Confidence 45789999999999999999998876 211 123577776644 4556655544
No 247
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.45 E-value=0.0094 Score=49.32 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=21.5
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+|+|.|+.|+||||+++.+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998865
No 248
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.42 E-value=0.0095 Score=50.26 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.9
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.|.|.|++|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998765
No 249
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.42 E-value=0.0074 Score=50.47 Aligned_cols=24 Identities=29% Similarity=0.220 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (347)
..+++|+|+.|+|||||++.++..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999875
No 250
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.41 E-value=0.042 Score=60.23 Aligned_cols=87 Identities=17% Similarity=0.145 Sum_probs=58.1
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCcc---ccccChHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSES---WKNKSLVEKSCAI 253 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 253 (347)
...++.|+|++|+||||||.+++... . ..-..++|++.....+... +..++...+. .+..+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~-a--~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA-Q--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 453 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH-H--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH-H--hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHH
Confidence 45799999999999999999998876 2 2224678888877666432 4555542211 1233555666666
Q ss_pred HHHh-cCCcEEEEEeCCCC
Q 038882 254 FKIL-SNKKFVLLLDDVWE 271 (347)
Q Consensus 254 ~~~l-~~kr~LlVlDdv~~ 271 (347)
.... +.+.-+||+|.+..
T Consensus 454 ~~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHHTCCSEEEESCGGG
T ss_pred HHHHHhcCCcEEEECCHHH
Confidence 5544 35677999999854
No 251
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.41 E-value=0.011 Score=52.58 Aligned_cols=25 Identities=40% Similarity=0.575 Sum_probs=23.0
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+++|+|+.|+|||||++.++...
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999998876
No 252
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.38 E-value=0.022 Score=48.33 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=23.6
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
....|.|.|++|+||||+++.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999987
No 253
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.37 E-value=0.011 Score=49.59 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCchHHHHHHHHH
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNN 200 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~ 200 (347)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999865
No 254
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.36 E-value=0.011 Score=50.60 Aligned_cols=26 Identities=38% Similarity=0.547 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||.+.++.-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45699999999999999999998654
No 255
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.35 E-value=0.011 Score=51.37 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||++.++.-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 45799999999999999999997654
No 256
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.34 E-value=0.0069 Score=48.98 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=22.2
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.+++|+|..|+|||||++.+...+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998877
No 257
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.33 E-value=0.038 Score=59.67 Aligned_cols=88 Identities=17% Similarity=0.140 Sum_probs=58.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCcc---ccccChHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSES---WKNKSLVEKSCAI 253 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 253 (347)
..+++.|+|.+|+||||||.+++... . ..-..++|++.....+.. .+..++...+. ....+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~-~--~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l 453 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA-Q--REGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 453 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH-H--HTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH-H--HhCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHH
Confidence 45799999999999999999998776 2 223468898887776653 24555543221 1223455555555
Q ss_pred HHHh-cCCcEEEEEeCCCCc
Q 038882 254 FKIL-SNKKFVLLLDDVWEP 272 (347)
Q Consensus 254 ~~~l-~~kr~LlVlDdv~~~ 272 (347)
.... +.+.-+||+|.+...
T Consensus 454 ~~lv~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTTC
T ss_pred HHHHHhcCCCEEEECCHHHh
Confidence 5544 346679999998654
No 258
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.33 E-value=0.011 Score=50.75 Aligned_cols=26 Identities=38% Similarity=0.572 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||++.++.-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45799999999999999999997654
No 259
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.32 E-value=0.011 Score=50.34 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+|.|.|++|+||||+++.+...+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998765
No 260
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.32 E-value=0.01 Score=49.91 Aligned_cols=26 Identities=38% Similarity=0.694 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||++.++.-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999997654
No 261
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.32 E-value=0.011 Score=50.12 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...|.|.|++|+||||+|+.+...+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998876
No 262
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.31 E-value=0.011 Score=51.04 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||.+.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999999997654
No 263
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.29 E-value=0.011 Score=51.49 Aligned_cols=26 Identities=35% Similarity=0.616 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||++.+..-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45799999999999999999997644
No 264
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.27 E-value=0.041 Score=45.46 Aligned_cols=86 Identities=22% Similarity=0.167 Sum_probs=45.2
Q ss_pred EEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCcc---ccccChHHHHHHHHHH
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSES---WKNKSLVEKSCAIFKI 256 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~ 256 (347)
.|+|=|..|+||||.++.+++.. .... . .+++..-.......+..+.++..-...... .-..+..+....+...
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L-~~~g-~-~v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~ 78 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL-EKRG-K-KVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQY 78 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-HHTT-C-CEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-HHCC-C-cEEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999887 3222 2 233333333334455555555432211000 0001122333445555
Q ss_pred hcCCcEEEEEeCC
Q 038882 257 LSNKKFVLLLDDV 269 (347)
Q Consensus 257 l~~kr~LlVlDdv 269 (347)
|... ..+|.|-.
T Consensus 79 L~~g-~~Vi~DRy 90 (197)
T 3hjn_A 79 LSEG-YAVLLDRY 90 (197)
T ss_dssp HTTT-CEEEEESC
T ss_pred HHCC-CeEEeccc
Confidence 5544 45677764
No 265
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.27 E-value=0.022 Score=51.67 Aligned_cols=37 Identities=24% Similarity=0.425 Sum_probs=28.2
Q ss_pred HHHHHHHhh--ccCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 166 FDDVWRCII--EEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 166 ~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+...+. .+...+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 344444444 2467899999999999999999988765
No 266
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=95.26 E-value=0.02 Score=53.27 Aligned_cols=93 Identities=10% Similarity=0.191 Sum_probs=53.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccC--------CCCC-EEEEEEecCCC-ChHHHHHHHHHhcCCC-----Cccc
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHER--------HDFD-IVIWVVVSKDL-NLEKVQEDIGKKIDLF-----SESW 241 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--------~~f~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~-----~~~~ 241 (347)
....++|.|.+|+|||+|+.++++.. ... ++-+ .++++-+.+.. ...++.+++...=... ....
T Consensus 146 rGQr~~Ifgg~G~GKt~L~~~Ia~~~-~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~ 224 (464)
T 3gqb_B 146 RGQKLPIFSGSGLPANEIAAQIARQA-TVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKA 224 (464)
T ss_dssp TTCBCCEEEETTSCHHHHHHHHHHHC-BCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEET
T ss_pred cCCEEEEecCCCCCchHHHHHHHHHH-HhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECC
Confidence 45678899999999999999998875 221 1222 55666676653 3555666554321000 0001
Q ss_pred cccChH-----HHHHHHHHHhc---CCcEEEEEeCCC
Q 038882 242 KNKSLV-----EKSCAIFKILS---NKKFVLLLDDVW 270 (347)
Q Consensus 242 ~~~~~~-----~~~~~l~~~l~---~kr~LlVlDdv~ 270 (347)
+..... .....+.++++ ++..||++||+-
T Consensus 225 d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 225 DDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp TSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 111111 12234556654 689999999983
No 267
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.26 E-value=0.011 Score=48.30 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.-.++|+|.+|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4678999999999999999998754
No 268
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.26 E-value=0.012 Score=50.85 Aligned_cols=26 Identities=38% Similarity=0.638 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||.+.++.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45799999999999999999997654
No 269
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.24 E-value=0.013 Score=47.54 Aligned_cols=25 Identities=40% Similarity=0.570 Sum_probs=22.7
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.+++.|+|..|+|||||+..+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999998875
No 270
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.24 E-value=0.012 Score=51.27 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||++.++.-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45799999999999999999997654
No 271
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.23 E-value=0.11 Score=48.58 Aligned_cols=51 Identities=8% Similarity=-0.037 Sum_probs=35.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIG 231 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 231 (347)
...++.|.|.+|+|||+||..++... ... .-..++|++.. .+..++...++
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~-a~~-~g~~vl~~slE--~~~~~l~~R~~ 249 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNA-ALK-EGVGVGIYSLE--MPAAQLTLRMM 249 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHH-HHT-TCCCEEEEESS--SCHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH-HHh-CCCeEEEEECC--CCHHHHHHHHH
Confidence 45689999999999999999998876 221 12356776654 34556665554
No 272
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=95.22 E-value=0.036 Score=52.15 Aligned_cols=96 Identities=20% Similarity=0.232 Sum_probs=55.2
Q ss_pred HHHhhc-cCceEEEEEeCCCCchHHHH-HHHHHhhhccCCCCC-EEEEEEecCCC-ChHHHHHHHHHhcCCCCc----cc
Q 038882 170 WRCIIE-EQVGIIGLYGAGGVGKTTLL-KQLNNKLCHERHDFD-IVIWVVVSKDL-NLEKVQEDIGKKIDLFSE----SW 241 (347)
Q Consensus 170 ~~~L~~-~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~----~~ 241 (347)
++.|.. .....++|.|.+|+|||+|| ..+.+.. .-+ .++++-+.+.. ...++.+++...=..... ..
T Consensus 153 ID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~at 227 (502)
T 2qe7_A 153 IDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTAS 227 (502)
T ss_dssp HHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEEC
T ss_pred cccccccccCCEEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEEC
Confidence 344443 35678899999999999996 4666653 244 34677777654 355666666542211110 00
Q ss_pred cccChHH------HHHHHHHHh--cCCcEEEEEeCCC
Q 038882 242 KNKSLVE------KSCAIFKIL--SNKKFVLLLDDVW 270 (347)
Q Consensus 242 ~~~~~~~------~~~~l~~~l--~~kr~LlVlDdv~ 270 (347)
.+.+... ....+.+++ +++..||++||+.
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 228 ASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 1111111 122344555 4689999999983
No 273
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.20 E-value=0.012 Score=51.56 Aligned_cols=23 Identities=30% Similarity=0.644 Sum_probs=20.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLN 199 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~ 199 (347)
...+|+|.|++|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999997
No 274
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.19 E-value=0.024 Score=50.22 Aligned_cols=43 Identities=21% Similarity=0.324 Sum_probs=30.8
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCC
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDL 221 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~ 221 (347)
...++|+|+|-||+||||+|..++... ... =..++-|......
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~L-a~~--G~~VlliD~D~~~ 81 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAF-SIL--GKRVLQIGCDPKH 81 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH-HHT--TCCEEEEEESSSC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHH-HHC--CCeEEEEeCCCCC
Confidence 367899999999999999999998877 222 1245666655433
No 275
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.18 E-value=0.011 Score=50.93 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (347)
...+++|+|+.|+|||||++.++.-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999874
No 276
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.17 E-value=0.016 Score=54.14 Aligned_cols=25 Identities=36% Similarity=0.441 Sum_probs=22.6
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+|.|+|.+|+||||++..++...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998876
No 277
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.16 E-value=0.022 Score=49.40 Aligned_cols=110 Identities=13% Similarity=0.157 Sum_probs=56.2
Q ss_pred ccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecC-CCChHHHHHHHHH--hcCCCCccccccChHHHHH
Q 038882 175 EEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSK-DLNLEKVQEDIGK--KIDLFSESWKNKSLVEKSC 251 (347)
Q Consensus 175 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~~ 251 (347)
-....+++|+|+.|+|||||++.+...+ .. .+...+++.-.. .+-.... ..+.. .++. +......
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~-~~--~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl--------~~~~l~~ 89 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI-NQ--TKSYHIITIEDPIEYVFKHK-KSIVNQREVGE--------DTKSFAD 89 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH-HH--HCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT--------TBSCHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC-CC--CCCCEEEEcCCcceeecCCc-ceeeeHHHhCC--------CHHHHHH
Confidence 3456799999999999999999998765 21 112333322110 0000000 00000 0000 1122345
Q ss_pred HHHHHhcCCcEEEEEeCCCCcccccccccCCCCCCCCcEEEEecCChh
Q 038882 252 AIFKILSNKKFVLLLDDVWEPVDLTKVGVPIPNSTNASKVLFTTRYKE 299 (347)
Q Consensus 252 ~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~ 299 (347)
.+...|..++=+|++|+.-+......+... ...|.-|++||...+
T Consensus 90 ~la~aL~~~p~illlDEp~D~~~~~~~l~~---~~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 90 ALRAALREDPDVIFVGEMRDLETVETALRA---AETGHLVFGTLHTNT 134 (261)
T ss_dssp HHHHHHHHCCSEEEESCCCSHHHHHHHHHH---HHTTCEEEEEECCSS
T ss_pred HHHHHHhhCCCEEEeCCCCCHHHHHHHHHH---HccCCEEEEEeCcch
Confidence 566666667778888988643332222111 123556777776644
No 278
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.15 E-value=0.013 Score=52.69 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=22.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.+|+|.|+.|+||||||+.++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999998875
No 279
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.14 E-value=0.014 Score=50.80 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||++.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45799999999999999999987654
No 280
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.11 E-value=0.014 Score=51.14 Aligned_cols=26 Identities=46% Similarity=0.494 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||++.++.-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45799999999999999999998654
No 281
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.11 E-value=0.012 Score=51.32 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (347)
...+++|+|+.|+|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999874
No 282
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=95.11 E-value=0.044 Score=51.65 Aligned_cols=96 Identities=14% Similarity=0.206 Sum_probs=54.9
Q ss_pred HHHhhc-cCceEEEEEeCCCCchHHHH-HHHHHhhhccCCCCCE-EEEEEecCCC-ChHHHHHHHHHhcCCCCc----cc
Q 038882 170 WRCIIE-EQVGIIGLYGAGGVGKTTLL-KQLNNKLCHERHDFDI-VIWVVVSKDL-NLEKVQEDIGKKIDLFSE----SW 241 (347)
Q Consensus 170 ~~~L~~-~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~~f~~-~~wv~vs~~~-~~~~~~~~i~~~l~~~~~----~~ 241 (347)
++.|.. .....++|.|.+|+|||+|| ..+.+.. .-+. ++++-+.+.. ...++.+++...=..... ..
T Consensus 166 ID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~at 240 (515)
T 2r9v_A 166 IDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVAS 240 (515)
T ss_dssp HHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEEC
T ss_pred cccccccccCCEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEEC
Confidence 344433 35678899999999999996 4666643 3453 4677777654 355666666542111000 00
Q ss_pred cccChH------HHHHHHHHHh--cCCcEEEEEeCCC
Q 038882 242 KNKSLV------EKSCAIFKIL--SNKKFVLLLDDVW 270 (347)
Q Consensus 242 ~~~~~~------~~~~~l~~~l--~~kr~LlVlDdv~ 270 (347)
.+.+.. .....+.+++ +++..||++||+.
T Consensus 241 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 241 ASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 111111 1122344555 4689999999983
No 283
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.11 E-value=0.026 Score=53.18 Aligned_cols=39 Identities=31% Similarity=0.457 Sum_probs=29.0
Q ss_pred hhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 163 ESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 163 ~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+..+.+.+..+. +.+.|.|.+|+|||+++..+....
T Consensus 31 ~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 31 KNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 334444545555443 489999999999999999998877
No 284
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=95.07 E-value=0.036 Score=49.82 Aligned_cols=46 Identities=26% Similarity=0.223 Sum_probs=31.9
Q ss_pred hhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCC
Q 038882 173 IIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDL 221 (347)
Q Consensus 173 L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~ 221 (347)
+.....+++.+.|-||+||||+|..++... . ..-..++-|+.....
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~l-a--~~g~~vllid~D~~~ 56 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQL-A--KVRRSVLLLSTDPAH 56 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHH-T--TSSSCEEEEECCSSC
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHH-H--hCCCcEEEEECCCCC
Confidence 444556888899999999999999998876 2 222345555554333
No 285
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.06 E-value=0.015 Score=52.78 Aligned_cols=26 Identities=38% Similarity=0.572 Sum_probs=23.4
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||++.++...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 35799999999999999999998876
No 286
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.06 E-value=0.014 Score=52.16 Aligned_cols=24 Identities=38% Similarity=0.412 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.+|.|+|+.|+||||||+.++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999998865
No 287
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.03 E-value=0.013 Score=50.31 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||++.++.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45799999999999999999997654
No 288
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=95.03 E-value=0.031 Score=50.56 Aligned_cols=30 Identities=33% Similarity=0.438 Sum_probs=25.4
Q ss_pred hhccCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 173 IIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 173 L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+.....+++.+.|.||+||||+|..++...
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~l 42 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQL 42 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 444567899999999999999999988776
No 289
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.02 E-value=0.013 Score=48.23 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...++|+|.+|+|||||.+.+....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568999999999999999998753
No 290
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.00 E-value=0.014 Score=50.83 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=21.0
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.++|+|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999765
No 291
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.99 E-value=0.014 Score=51.42 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCchHHHHHHHHHh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (347)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999864
No 292
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=94.99 E-value=0.0072 Score=58.92 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=32.2
Q ss_pred CCcccchhhhHHHHHHHhhccCce-----------EEEEEeCCCCchHHHHHHHHHhh
Q 038882 156 EPRIIGQESIFDDVWRCIIEEQVG-----------IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 156 ~~~~vGR~~~~~~l~~~L~~~~~~-----------vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.+.++|.+.....+.-.|..+..+ -+.++|++|+|||+||+.+++..
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 345677776555554444433211 58899999999999999887654
No 293
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.99 E-value=0.015 Score=46.26 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCchHHHHHHHHHh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (347)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999764
No 294
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.95 E-value=0.048 Score=45.18 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=22.4
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.+|.|.|+.|+||||+++.++...
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999876
No 295
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.92 E-value=0.016 Score=45.34 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..|.++|.+|+|||||+..+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998653
No 296
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.92 E-value=0.016 Score=51.43 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=23.5
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+...+++|+|+.|+|||||++.+..-+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 456799999999999999999998654
No 297
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.92 E-value=0.028 Score=45.45 Aligned_cols=34 Identities=29% Similarity=0.531 Sum_probs=26.5
Q ss_pred HHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHh
Q 038882 167 DDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 167 ~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (347)
..+.+ +.......|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34555 44455678899999999999999999854
No 298
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.91 E-value=0.012 Score=50.64 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||.+.++.-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999999987654
No 299
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.89 E-value=0.013 Score=50.71 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||++.+..-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45799999999999999999997654
No 300
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.85 E-value=0.051 Score=55.65 Aligned_cols=122 Identities=15% Similarity=0.186 Sum_probs=66.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhc---cCCCCCEEEEEEecCCC-------Ch-----------HHHHHHHHHhcC
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCH---ERHDFDIVIWVVVSKDL-------NL-----------EKVQEDIGKKID 235 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~~f~~~~wv~vs~~~-------~~-----------~~~~~~i~~~l~ 235 (347)
...+++|+|+.|+|||||++.+..-... ..... ...++ .+.. +. ..-..+++..++
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~-~~~~v--~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lg 536 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEEC-RTVYV--EHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFG 536 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTS-CEEET--TCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccce-eEEEE--cccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcC
Confidence 4568999999999999999999842100 00011 12222 2111 11 223445666666
Q ss_pred CCC----ccccccCh-HHHHHHHHHHhcCCcEEEEEeCCCCcccc---cccccCCCCCCCCcEEEEecCChhHHhh
Q 038882 236 LFS----ESWKNKSL-VEKSCAIFKILSNKKFVLLLDDVWEPVDL---TKVGVPIPNSTNASKVLFTTRYKEVCGK 303 (347)
Q Consensus 236 ~~~----~~~~~~~~-~~~~~~l~~~l~~kr~LlVlDdv~~~~~~---~~l~~~l~~~~~gs~iiiTtR~~~v~~~ 303 (347)
... ......+. +...-.|...+-.++=+|+||+--+.-+. ..+...+.. .|..||++|.+......
T Consensus 537 L~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~ 610 (986)
T 2iw3_A 537 FTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDN 610 (986)
T ss_dssp CCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHH
T ss_pred CChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHH
Confidence 521 11122232 23334566666778889999998665322 112222222 36678889988766543
No 301
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.85 E-value=0.054 Score=45.29 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=22.7
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...|.|.|+.|+||||+++.+....
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999999877
No 302
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.83 E-value=0.018 Score=47.58 Aligned_cols=38 Identities=24% Similarity=0.163 Sum_probs=21.8
Q ss_pred hHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 165 IFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 165 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
-.+.+.+.....+.-.|.++|.+|+|||||...+.+..
T Consensus 17 ~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 17 RGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred chhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 33344344444455678999999999999999988653
No 303
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.83 E-value=0.014 Score=54.30 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=23.4
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
....+|.|+|++|+||||+|+.+....
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 356899999999999999999987654
No 304
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.82 E-value=0.013 Score=50.55 Aligned_cols=125 Identities=18% Similarity=0.205 Sum_probs=64.6
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCC---CCEEEEEEecCC----CCh----------------------HHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHD---FDIVIWVVVSKD----LNL----------------------EKVQ 227 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~---f~~~~wv~vs~~----~~~----------------------~~~~ 227 (347)
...+++|+|+.|+|||||.+.++.-....... ...+.|+.-... .++ .+-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~ 109 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA 109 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHH
Confidence 45689999999999999999998754100000 011233321110 000 1123
Q ss_pred HHHHHhcCCCC---ccccccChH-HHHHHHHHHhcCCcEEEEEeCCCCcccc------cccccCCCCCCCCcEEEEecCC
Q 038882 228 EDIGKKIDLFS---ESWKNKSLV-EKSCAIFKILSNKKFVLLLDDVWEPVDL------TKVGVPIPNSTNASKVLFTTRY 297 (347)
Q Consensus 228 ~~i~~~l~~~~---~~~~~~~~~-~~~~~l~~~l~~kr~LlVlDdv~~~~~~------~~l~~~l~~~~~gs~iiiTtR~ 297 (347)
.+++..++... ......+.. ...-.+...|-.++=+|+||+..+.-|. ..+...+. ...|..||++|.+
T Consensus 110 ~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~-~~~g~tvi~vtHd 188 (253)
T 2nq2_C 110 MQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLA-QSQNMTVVFTTHQ 188 (253)
T ss_dssp HHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHH-HTSCCEEEEEESC
T ss_pred HHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-HhcCCEEEEEecC
Confidence 34455554321 111122222 2233455566677889999998664221 11111121 1226678999998
Q ss_pred hhHHh
Q 038882 298 KEVCG 302 (347)
Q Consensus 298 ~~v~~ 302 (347)
...+.
T Consensus 189 ~~~~~ 193 (253)
T 2nq2_C 189 PNQVV 193 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76553
No 305
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=94.81 E-value=0.055 Score=51.06 Aligned_cols=100 Identities=11% Similarity=0.165 Sum_probs=56.4
Q ss_pred HHHhhc-cCceEEEEEeCCCCchHHHH-HHHHHhhhcc----CCCCC-EEEEEEecCCC-ChHHHHHHHHHhcCCCCc--
Q 038882 170 WRCIIE-EQVGIIGLYGAGGVGKTTLL-KQLNNKLCHE----RHDFD-IVIWVVVSKDL-NLEKVQEDIGKKIDLFSE-- 239 (347)
Q Consensus 170 ~~~L~~-~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~----~~~f~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~-- 239 (347)
++.|.. .....++|.|.+|+|||+|| ..+.+.. .. ..+-+ .++++-+.+.. ...++.+++...=.....
T Consensus 153 ID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~-~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvv 231 (510)
T 2ck3_A 153 VDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQK-RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIV 231 (510)
T ss_dssp HHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTH-HHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEE
T ss_pred eccccccccCCEEEEecCCCCCchHHHHHHHHHHH-hhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceE
Confidence 344443 45678899999999999995 5676665 21 12334 46677777654 355666666542111000
Q ss_pred --cccccChH------HHHHHHHHHh--cCCcEEEEEeCCC
Q 038882 240 --SWKNKSLV------EKSCAIFKIL--SNKKFVLLLDDVW 270 (347)
Q Consensus 240 --~~~~~~~~------~~~~~l~~~l--~~kr~LlVlDdv~ 270 (347)
...+.+.. .....+.+++ +++..||++||+.
T Consensus 232 V~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 232 VSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 00111111 1122344555 4689999999983
No 306
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.81 E-value=0.057 Score=50.09 Aligned_cols=34 Identities=35% Similarity=0.408 Sum_probs=27.0
Q ss_pred HHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 168 DVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 168 ~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.+.+. ......+++|+|+.|+|||||.+.+....
T Consensus 158 ~L~~l-~~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 158 NFRRL-IKRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp HHHHH-HTSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHHH-HHhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 34344 34556799999999999999999998866
No 307
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.81 E-value=0.011 Score=47.89 Aligned_cols=22 Identities=45% Similarity=0.597 Sum_probs=19.7
Q ss_pred EEEEEeCCCCchHHHHHHHHHh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~ 201 (347)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998763
No 308
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.80 E-value=0.023 Score=51.52 Aligned_cols=26 Identities=42% Similarity=0.469 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||.+.++.-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 45789999999999999999998754
No 309
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.80 E-value=0.017 Score=51.86 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+|.|+|+.|+|||||+..++...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4689999999999999999998755
No 310
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.80 E-value=0.011 Score=52.22 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=19.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+..+|+|.|..|+||||+|+.+....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998765
No 311
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=94.79 E-value=0.1 Score=49.03 Aligned_cols=95 Identities=18% Similarity=0.233 Sum_probs=54.0
Q ss_pred HHhhc-cCceEEEEEeCCCCchHHHH-HHHHHhhhccCCCCC-EEEEEEecCCC-ChHHHHHHHHHhcCCCCcc----cc
Q 038882 171 RCIIE-EQVGIIGLYGAGGVGKTTLL-KQLNNKLCHERHDFD-IVIWVVVSKDL-NLEKVQEDIGKKIDLFSES----WK 242 (347)
Q Consensus 171 ~~L~~-~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~----~~ 242 (347)
+.|.. .....++|.|..|+|||+|+ ..+.+.. +-+ .++++-+.+.. ...++.+++...=...... ..
T Consensus 154 D~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~-----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~ata 228 (513)
T 3oaa_A 154 DSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR-----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATA 228 (513)
T ss_dssp HHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS-----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECT
T ss_pred ccccccccCCEEEeecCCCCCcchHHHHHHHhhc-----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECC
Confidence 44433 45678899999999999996 5665532 233 45677787764 3556666654431111000 01
Q ss_pred ccChH------HHHHHHHHHh--cCCcEEEEEeCCC
Q 038882 243 NKSLV------EKSCAIFKIL--SNKKFVLLLDDVW 270 (347)
Q Consensus 243 ~~~~~------~~~~~l~~~l--~~kr~LlVlDdv~ 270 (347)
+.+.. .....+.+++ +++..||++||+.
T Consensus 229 d~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 229 SESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChH
Confidence 11111 1112334444 5799999999983
No 312
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.78 E-value=0.048 Score=46.40 Aligned_cols=52 Identities=17% Similarity=0.216 Sum_probs=34.0
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHH
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIG 231 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 231 (347)
...|.|.|+.|+||||+++.+.... .. ..+..+....-.......+.+++++
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l-~~-~~~~~~~~~rep~~t~~g~~ir~~l 78 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL-QQ-NGIDHITRTREPGGTLLAEKLRALV 78 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH-HH-TTCCCEEEEESSCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-Hh-cCCCeeeeecCCCCCHHHHHHHHHH
Confidence 4689999999999999999999877 32 3455344443332223344444444
No 313
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.78 E-value=0.031 Score=53.15 Aligned_cols=45 Identities=13% Similarity=-0.048 Sum_probs=34.0
Q ss_pred cccchhhhHHHHHHHh--hccCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 158 RIIGQESIFDDVWRCI--IEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 158 ~~vGR~~~~~~l~~~L--~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+.|.+-.+.+.+.. ......+|.+.|++|+||||+|+.+....
T Consensus 373 ~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred ccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 3455655555666655 22355789999999999999999999987
No 314
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.77 E-value=0.016 Score=50.61 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...++.|+|++|+|||||+..++...
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998755
No 315
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.77 E-value=0.019 Score=50.87 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.++|.|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3688999999999999999998765
No 316
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=94.74 E-value=0.16 Score=48.41 Aligned_cols=57 Identities=26% Similarity=0.359 Sum_probs=40.6
Q ss_pred HHHHhhc-cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCC-hHHHHHHH
Q 038882 169 VWRCIIE-EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLN-LEKVQEDI 230 (347)
Q Consensus 169 l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i 230 (347)
.++.|.. .....++|.|..|+|||+|+..+.+.. +-+.++++-+.+..+ ..++++++
T Consensus 217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred hhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 3444444 456789999999999999999987653 335778888887655 45555554
No 317
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.74 E-value=0.017 Score=45.24 Aligned_cols=23 Identities=43% Similarity=0.576 Sum_probs=20.3
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998654
No 318
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.73 E-value=0.03 Score=53.86 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=23.7
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...++.|+|++|+|||||++.+....
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 45799999999999999999999876
No 319
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.72 E-value=0.022 Score=48.96 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=22.7
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..++.+.|.||+|||||+..+....
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5788899999999999999999876
No 320
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.71 E-value=0.021 Score=48.52 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+|+|.|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998765
No 321
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.70 E-value=0.035 Score=50.76 Aligned_cols=27 Identities=26% Similarity=0.102 Sum_probs=23.6
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
....+++|+|++|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 356799999999999999999998754
No 322
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.69 E-value=0.081 Score=43.42 Aligned_cols=43 Identities=23% Similarity=0.288 Sum_probs=29.6
Q ss_pred eEEEEE-eCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChH
Q 038882 179 GIIGLY-GAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLE 224 (347)
Q Consensus 179 ~vi~I~-G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 224 (347)
++|+|+ +-||+||||+|..++... ... -..++.+......+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~l-a~~--g~~vlliD~D~~~~~~ 45 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATAL-SRS--GYNIAVVDTDPQMSLT 45 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHH-HHT--TCCEEEEECCTTCHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHH-HHC--CCeEEEEECCCCCCHH
Confidence 577777 679999999999998887 222 2246666665544433
No 323
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=94.68 E-value=0.037 Score=52.13 Aligned_cols=88 Identities=14% Similarity=0.209 Sum_probs=49.6
Q ss_pred CceEEEEEeCCCCchHHHH-HHHHHhhhccCCCCC-EEEEEEecCCCC-hHHHHHHHHHhcCCC--------Ccccc--c
Q 038882 177 QVGIIGLYGAGGVGKTTLL-KQLNNKLCHERHDFD-IVIWVVVSKDLN-LEKVQEDIGKKIDLF--------SESWK--N 243 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~vs~~~~-~~~~~~~i~~~l~~~--------~~~~~--~ 243 (347)
....++|.|.+|+|||+|| ..+.+.. .-+ .++++-+.+... ..++.+++...=... .+.+. .
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r 236 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQ-----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQ 236 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCC-----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGT
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHH
Confidence 4567899999999999996 5666643 244 456777776543 445555543321000 00000 0
Q ss_pred cChHHHHHHHHHHh--cCCcEEEEEeCC
Q 038882 244 KSLVEKSCAIFKIL--SNKKFVLLLDDV 269 (347)
Q Consensus 244 ~~~~~~~~~l~~~l--~~kr~LlVlDdv 269 (347)
.-.......+.+++ +++..||++||+
T Consensus 237 ~~a~~~a~tiAEyfrd~G~dVLli~Dsl 264 (507)
T 1fx0_A 237 YLAPYTGAALAEYFMYRERHTLIIYDDL 264 (507)
T ss_dssp THHHHHHHHHHHHHHHTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 11112223334444 579999999997
No 324
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=94.67 E-value=0.04 Score=51.56 Aligned_cols=99 Identities=10% Similarity=0.106 Sum_probs=57.6
Q ss_pred HHHhhc-cCceEEEEEeCCCCchHHHHHHHHHhhhcc-CCCC-CEEEEEEecCCC-ChHHHHHHHHHhcCCCCc----cc
Q 038882 170 WRCIIE-EQVGIIGLYGAGGVGKTTLLKQLNNKLCHE-RHDF-DIVIWVVVSKDL-NLEKVQEDIGKKIDLFSE----SW 241 (347)
Q Consensus 170 ~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~~f-~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~----~~ 241 (347)
++.|.. .....++|.|.+|+|||+|+.+++++. .. +..- +.++++-+.+.. ...++.+++...=..... ..
T Consensus 143 ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~-~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~t 221 (469)
T 2c61_A 143 IDGTNTLVRGQKLPIFSASGLPHNEIALQIARQA-SVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNL 221 (469)
T ss_dssp HHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHC-BCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEE
T ss_pred eeeeeccccCCEEEEECCCCCCHHHHHHHHHHHH-hhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEEC
Confidence 344433 345678899999999999999999876 22 1111 356677676654 356666666543111000 00
Q ss_pred cccCh------HHHHHHHHHHhc---CCcEEEEEeCC
Q 038882 242 KNKSL------VEKSCAIFKILS---NKKFVLLLDDV 269 (347)
Q Consensus 242 ~~~~~------~~~~~~l~~~l~---~kr~LlVlDdv 269 (347)
.+.+. ......+.++++ ++..||++||+
T Consensus 222 sd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 222 ADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 11111 122234555554 69999999997
No 325
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.63 E-value=0.021 Score=46.11 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (347)
..|+++|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999874
No 326
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=94.60 E-value=0.048 Score=47.10 Aligned_cols=38 Identities=29% Similarity=0.505 Sum_probs=27.8
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecC
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSK 219 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 219 (347)
++|+|.|-||+||||+|..++... ... -..++-|....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~l-a~~--G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGL-HAM--GKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH-HTT--TCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHH-HHC--CCcEEEEcCCC
Confidence 578889999999999999999877 222 22455665543
No 327
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.59 E-value=0.02 Score=45.11 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.--|.|+|.+|+|||||+..+.+..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 3467899999999999999998754
No 328
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.59 E-value=0.16 Score=42.83 Aligned_cols=103 Identities=16% Similarity=0.106 Sum_probs=51.6
Q ss_pred HHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCC-CEEEEEEecCCCChHHHHHHHHHhcCCCCc------
Q 038882 167 DDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDF-DIVIWVVVSKDLNLEKVQEDIGKKIDLFSE------ 239 (347)
Q Consensus 167 ~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------ 239 (347)
++++..+..+ ..+.|.|..|+||||+.....-+........ ...+.+.........++.+.+...++....
T Consensus 67 ~~~i~~i~~g--~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~ 144 (235)
T 3llm_A 67 SEILEAISQN--SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYS 144 (235)
T ss_dssp HHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEE
T ss_pred HHHHHHHhcC--CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEe
Confidence 3444444443 6889999999999987765543321222222 223333333333334444555544432100
Q ss_pred ------------cccccChHHHHHHHHHHhcCCcEEEEEeCCCCc
Q 038882 240 ------------SWKNKSLVEKSCAIFKILSNKKFVLLLDDVWEP 272 (347)
Q Consensus 240 ------------~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~ 272 (347)
...-.+...+...+...+. +--+||+|+++..
T Consensus 145 ~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~-~~~~lVlDEah~~ 188 (235)
T 3llm_A 145 VRFESILPRPHASIMFCTVGVLLRKLEAGIR-GISHVIVDEIHER 188 (235)
T ss_dssp ETTEEECCCSSSEEEEEEHHHHHHHHHHCCT-TCCEEEECCTTSC
T ss_pred echhhccCCCCCeEEEECHHHHHHHHHhhhc-CCcEEEEECCccC
Confidence 0001234444455544333 3357899999763
No 329
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.59 E-value=0.022 Score=45.78 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=24.8
Q ss_pred HHHHhhc-cCceEEEEEeCCCCchHHHHHHHHHh
Q 038882 169 VWRCIIE-EQVGIIGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 169 l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (347)
+.+.+.. .....|.|+|.+|+|||||...+...
T Consensus 8 ~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 8 MFDKLWGSNKELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp HHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred HHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 3343444 45678899999999999999888643
No 330
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.56 E-value=0.017 Score=51.22 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||++.+..-+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 56799999999999999999987654
No 331
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.55 E-value=0.025 Score=48.18 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.5
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...|.|.|..|+||||+++.+....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3678999999999999999998876
No 332
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.54 E-value=0.065 Score=44.84 Aligned_cols=52 Identities=17% Similarity=0.163 Sum_probs=34.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHH
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGK 232 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 232 (347)
..|.+-|+.|+||||+++.+.... .. ..+..+.+..-.....+.+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l-~~-~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL-EQ-LGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH-HH-TTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH-HH-cCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 578999999999999999999877 33 23423333333333335555666654
No 333
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.53 E-value=0.033 Score=51.55 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (347)
...+++|+|.+|+|||||.+.+...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4579999999999999999999873
No 334
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.52 E-value=0.023 Score=50.27 Aligned_cols=25 Identities=36% Similarity=0.355 Sum_probs=22.5
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+|.|.|+.|+||||||..++...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999998765
No 335
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.50 E-value=0.017 Score=50.08 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (347)
..+++|+|+.|+|||||.+.++.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999754
No 336
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.49 E-value=0.046 Score=46.10 Aligned_cols=56 Identities=21% Similarity=0.133 Sum_probs=34.9
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHH
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGK 232 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 232 (347)
.....|.|.|+.|+||||+++.+.+.. .....++......-.......+.+++++.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l-~~~~g~~v~~~treP~~t~~g~~ir~~l~ 74 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL-SEIYGVNNVVLTREPGGTLLNESVRNLLF 74 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH-HHHHCGGGEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH-hhccCceeeEeeeCCCCChHHHHHHHHHh
Confidence 346789999999999999999999877 32123343331222222234455555554
No 337
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.48 E-value=0.022 Score=46.98 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.+.|.|.|+.|+||||||..+....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999999999997654
No 338
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.46 E-value=0.015 Score=49.24 Aligned_cols=25 Identities=32% Similarity=0.317 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (347)
...+|+|.|+.|+|||||++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999988653
No 339
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.44 E-value=0.033 Score=44.93 Aligned_cols=26 Identities=50% Similarity=0.538 Sum_probs=22.0
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHh
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (347)
.....|.|+|.+|+|||||...+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999998754
No 340
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.44 E-value=0.043 Score=47.47 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=27.4
Q ss_pred HHHHHHhhcc--CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 167 DDVWRCIIEE--QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 167 ~~l~~~L~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+..||... ....+.++|++|+|||.+|..+++..
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3455555543 24579999999999999999998853
No 341
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.42 E-value=0.022 Score=45.64 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCchHHHHHHHHHh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (347)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999865
No 342
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.42 E-value=0.022 Score=44.78 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.-|.++|.+|+|||||...+.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468899999999999999998654
No 343
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.41 E-value=0.02 Score=45.56 Aligned_cols=25 Identities=36% Similarity=0.437 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.--|.|+|.+|+|||||...+.+..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 3468999999999999999987653
No 344
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.37 E-value=0.022 Score=50.20 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||.+.+..-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45799999999999999999997754
No 345
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.36 E-value=0.033 Score=50.59 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||.+.++.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 45789999999999999999998754
No 346
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.35 E-value=0.026 Score=44.36 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=19.7
Q ss_pred EEEEeCCCCchHHHHHHHHHhh
Q 038882 181 IGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 181 i~I~G~~GiGKTtLa~~v~~~~ 202 (347)
|.++|.+|+|||||...+.+..
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999997654
No 347
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.35 E-value=0.033 Score=50.65 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||.+.++.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 45799999999999999999998754
No 348
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.35 E-value=0.024 Score=45.92 Aligned_cols=24 Identities=42% Similarity=0.497 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
-.|.++|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 467899999999999999998654
No 349
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.34 E-value=0.033 Score=50.92 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||.+.+..-.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 45689999999999999999998754
No 350
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.33 E-value=0.023 Score=51.63 Aligned_cols=26 Identities=38% Similarity=0.529 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||++.+..-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 45799999999999999999998654
No 351
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.32 E-value=0.024 Score=46.03 Aligned_cols=26 Identities=31% Similarity=0.290 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
....|+|+|.+|+|||||...+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34588999999999999999998753
No 352
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.32 E-value=0.025 Score=44.37 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
--|.++|.+|+|||||...+.+..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 358899999999999999987653
No 353
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.32 E-value=0.025 Score=44.46 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
--|.|+|.+|+|||||...+.+..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 357899999999999999998753
No 354
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.32 E-value=0.024 Score=45.80 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.--|.|+|.+|+|||||+..+.+..
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999998753
No 355
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.30 E-value=0.034 Score=50.76 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||.+.++.-.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 45799999999999999999998654
No 356
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.30 E-value=0.024 Score=44.87 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
--|.++|.+|+|||||...+.+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998653
No 357
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.30 E-value=0.034 Score=50.76 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||.+.++.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 45689999999999999999998754
No 358
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.30 E-value=0.027 Score=45.52 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.+.+|+|+.|+|||||+..++.-.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 488999999999999999987654
No 359
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.29 E-value=0.024 Score=44.69 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.2
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
-|.++|.+|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999988654
No 360
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.29 E-value=0.048 Score=49.38 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+..+|+|+|.+|+|||||...+....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 36899999999999999999998754
No 361
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.28 E-value=0.024 Score=51.36 Aligned_cols=26 Identities=35% Similarity=0.608 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||.+.++.-.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45799999999999999999998654
No 362
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.28 E-value=0.024 Score=44.74 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
--|.++|.+|+|||||...+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998754
No 363
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.24 E-value=0.027 Score=50.32 Aligned_cols=25 Identities=40% Similarity=0.557 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (347)
..+++.|+|+.|+|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 3679999999999999999999864
No 364
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.23 E-value=0.028 Score=50.87 Aligned_cols=122 Identities=19% Similarity=0.151 Sum_probs=66.4
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEE----------------ecCCC------ChH----------
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVV----------------VSKDL------NLE---------- 224 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~----------------vs~~~------~~~---------- 224 (347)
...+++|+|+.|+|||||.+.++.-. ....+.+++. +.+.+ ++.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~----~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~ 100 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH----VPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMK 100 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS----CCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC----CCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHc
Confidence 45799999999999999999998754 1122222221 11111 111
Q ss_pred -----HHHHHHHHhcCCCC---ccccccCh-HHHHHHHHHHhcCCcEEEEEeCCCCcccc------cccccCCCCCCCCc
Q 038882 225 -----KVQEDIGKKIDLFS---ESWKNKSL-VEKSCAIFKILSNKKFVLLLDDVWEPVDL------TKVGVPIPNSTNAS 289 (347)
Q Consensus 225 -----~~~~~i~~~l~~~~---~~~~~~~~-~~~~~~l~~~l~~kr~LlVlDdv~~~~~~------~~l~~~l~~~~~gs 289 (347)
+-..++++.++... ......+. +...-.|...|-.++-+|+||+--+.-|. ..+...+. ...|.
T Consensus 101 ~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~-~~~g~ 179 (348)
T 3d31_A 101 KIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLH-KKNKL 179 (348)
T ss_dssp CCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHH-HHTTC
T ss_pred CCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHH-HhcCC
Confidence 12334555555421 11122232 23334566677788889999998654221 11111111 12366
Q ss_pred EEEEecCChhHHhh
Q 038882 290 KVLFTTRYKEVCGK 303 (347)
Q Consensus 290 ~iiiTtR~~~v~~~ 303 (347)
.||++|.+...+..
T Consensus 180 tii~vTHd~~~~~~ 193 (348)
T 3d31_A 180 TVLHITHDQTEARI 193 (348)
T ss_dssp EEEEEESCHHHHHH
T ss_pred EEEEEeCCHHHHHH
Confidence 78888988765443
No 365
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.22 E-value=0.025 Score=44.71 Aligned_cols=23 Identities=35% Similarity=0.684 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHHh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (347)
--|.++|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999999864
No 366
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=94.20 E-value=0.23 Score=47.46 Aligned_cols=57 Identities=23% Similarity=0.335 Sum_probs=39.8
Q ss_pred HHHHhhc-cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCC-ChHHHHHHH
Q 038882 169 VWRCIIE-EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDL-NLEKVQEDI 230 (347)
Q Consensus 169 l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i 230 (347)
.++.|.. .....++|.|..|+|||+|+.++.+.. +-+.++++-+.+.. ...++++++
T Consensus 222 vID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~-----~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 222 VIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS-----DVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhccCCccCCCEEeeecCCCccHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 3455544 456789999999999999999998764 23567888787763 344444443
No 367
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.19 E-value=0.054 Score=47.39 Aligned_cols=40 Identities=30% Similarity=0.450 Sum_probs=28.6
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCC
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKD 220 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 220 (347)
.++|+|.|-||+||||+|..++... ... . ..+.-|.....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~L-a~~-G-~rVlliD~D~q 41 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAAL-AEM-G-KKVMIVGCDPK 41 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHH-HHT-T-CCEEEEEECSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHH-HHC-C-CeEEEEecCCC
Confidence 3678889999999999999998877 222 2 24555655443
No 368
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.19 E-value=0.24 Score=47.36 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=23.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|.|.+|+|||||++.++...
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998876
No 369
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.19 E-value=0.026 Score=44.47 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.1
Q ss_pred EEEEEeCCCCchHHHHHHHHHh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~ 201 (347)
-|.++|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 5789999999999999988643
No 370
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.19 E-value=0.024 Score=44.81 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=19.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHH
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNN 200 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~ 200 (347)
--|.|+|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999999864
No 371
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.17 E-value=0.028 Score=45.62 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.--|.|+|.+|+|||||+..+.+..
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578899999999999998887653
No 372
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.17 E-value=0.028 Score=44.81 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.--|.|+|.+|+|||||...+.+..
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCc
Confidence 3468899999999999999987653
No 373
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.17 E-value=0.027 Score=44.98 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..-|.|+|.+|+|||||...+.+..
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4578999999999999999998753
No 374
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.16 E-value=0.053 Score=45.70 Aligned_cols=24 Identities=33% Similarity=0.182 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
-.|.+.|.||+||||+|..+....
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH
Confidence 357889999999999999988876
No 375
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.15 E-value=0.03 Score=44.19 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
--|.|+|.+|+|||||...+.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 458899999999999999988653
No 376
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.15 E-value=0.026 Score=44.95 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..-|.|+|.+|+|||||...+.+..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568999999999999999998653
No 377
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.14 E-value=0.027 Score=45.07 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=22.0
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
....|.|+|.+|+|||||...+.+..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 34678999999999999999987653
No 378
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.10 E-value=0.03 Score=44.67 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=22.2
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
....|.|+|.+|+|||||...+.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45678999999999999999997643
No 379
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.09 E-value=0.037 Score=50.88 Aligned_cols=24 Identities=42% Similarity=0.595 Sum_probs=22.0
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.+|.|.|+.|+||||||..++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 689999999999999999998775
No 380
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.08 E-value=0.03 Score=51.00 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=22.6
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...++|+|..|+|||||++.+...+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998766
No 381
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.07 E-value=0.032 Score=47.24 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...++|.|++|+||||+|+.+...+
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999998876
No 382
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.05 E-value=0.028 Score=45.64 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.--|.|+|.+|+|||||+..+.+..
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCC
Confidence 4578899999999999999887653
No 383
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.05 E-value=0.031 Score=45.51 Aligned_cols=24 Identities=42% Similarity=0.562 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (347)
...|+++|.+|+|||||...+.+.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999999874
No 384
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.05 E-value=0.066 Score=45.41 Aligned_cols=39 Identities=31% Similarity=0.394 Sum_probs=28.2
Q ss_pred EEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCC
Q 038882 181 IGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLN 222 (347)
Q Consensus 181 i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 222 (347)
|+|.|-||+||||+|..++... ... -..++-|......+
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~l-a~~--g~~VlliD~D~~~~ 41 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIM-ASD--YDKIYAVDGDPDSC 41 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHH-TTT--CSCEEEEEECTTSC
T ss_pred EEEecCCCCCHHHHHHHHHHHH-HHC--CCeEEEEeCCCCcC
Confidence 5668999999999999999887 222 24566666655443
No 385
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.04 E-value=0.031 Score=44.01 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
--|.++|.+|+|||||...+....
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 467899999999999999998643
No 386
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.03 E-value=0.03 Score=45.49 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (347)
....|.|+|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999764
No 387
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.03 E-value=0.039 Score=49.67 Aligned_cols=27 Identities=33% Similarity=0.524 Sum_probs=23.7
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
....+++|+|++|+|||||.+.+....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 456899999999999999999998654
No 388
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.02 E-value=0.032 Score=45.57 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (347)
.--|.|+|.+|+|||||...+...
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999998753
No 389
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.01 E-value=0.1 Score=56.43 Aligned_cols=87 Identities=16% Similarity=0.147 Sum_probs=60.3
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCccc---cccChHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSESW---KNKSLVEKSCAI 253 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 253 (347)
..++|-|+|+.|+||||||..+.... +..=...+|+...+..++.- ++.++..-+.. ...+.++....+
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~---~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 35799999999999999999998765 44456778988888777664 66666532221 223335555556
Q ss_pred HHHhc-CCcEEEEEeCCCC
Q 038882 254 FKILS-NKKFVLLLDDVWE 271 (347)
Q Consensus 254 ~~~l~-~kr~LlVlDdv~~ 271 (347)
...++ +..-+||+|-|..
T Consensus 1502 ~~~~~s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSVAA 1520 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTT
T ss_pred HHHHHcCCCCEEEEccHHh
Confidence 66665 4667999999843
No 390
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.00 E-value=0.05 Score=49.72 Aligned_cols=111 Identities=14% Similarity=0.147 Sum_probs=57.3
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEE-EEEecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHH
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVI-WVVVSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIF 254 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~-wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 254 (347)
....+++|+|+.|+|||||++.+...+ .. .....+ ++.. +... . .-...+......-..+.......+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~-~~--~~~g~I~~~e~--~~e~--~---~~~~~~~v~Q~~~g~~~~~~~~~l~ 203 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI-NQ--TKSYHIITIED--PIEY--V---FKHKKSIVNQREVGEDTKSFADALR 203 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH-HH--HSCCEEEEEES--SCCS--C---CCCSSSEEEEEEBTTTBSCSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc-Cc--CCCcEEEEecc--cHhh--h---hccCceEEEeeecCCCHHHHHHHHH
Confidence 456799999999999999999998866 21 112222 3221 1110 0 0000000000000001122345677
Q ss_pred HHhcCCcEEEEEeCCCCcccccccccCCCCCCCCcEEEEecCChh
Q 038882 255 KILSNKKFVLLLDDVWEPVDLTKVGVPIPNSTNASKVLFTTRYKE 299 (347)
Q Consensus 255 ~~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~ 299 (347)
..+...+=+|++|++.+.+........ ...|..|+.|+...+
T Consensus 204 ~~L~~~pd~illdE~~d~e~~~~~l~~---~~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 204 AALREDPDVIFVGEMRDLETVETALRA---AETGHLVFGTLHTNT 245 (372)
T ss_dssp HHTTSCCSEEEESCCCSHHHHHHHHHH---HTTTCEEEECCCCCS
T ss_pred HHhhhCcCEEEECCCCCHHHHHHHHHH---HhcCCEEEEEECcch
Confidence 777777888899998654433332222 123556777776543
No 391
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.99 E-value=0.033 Score=46.29 Aligned_cols=26 Identities=31% Similarity=0.290 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
....|.++|.+|+|||||+..+.+..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999998754
No 392
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.98 E-value=0.047 Score=44.78 Aligned_cols=24 Identities=38% Similarity=0.596 Sum_probs=20.6
Q ss_pred CceEEEEEeCCCCchHHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNN 200 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~ 200 (347)
....|+++|.+|+|||||...+.+
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 345688999999999999999865
No 393
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.96 E-value=0.031 Score=44.95 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..-|.|+|.+|+|||||...+.+..
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568899999999999999998754
No 394
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.95 E-value=0.032 Score=45.28 Aligned_cols=25 Identities=44% Similarity=0.410 Sum_probs=20.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.--|.|+|.+|+|||||++.+.+..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3568899999999999997776543
No 395
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.93 E-value=0.029 Score=45.29 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=20.2
Q ss_pred EEEEEeCCCCchHHHHHHHHHhh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
-|.|+|.+|+|||||...+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999988753
No 396
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.93 E-value=0.034 Score=43.97 Aligned_cols=25 Identities=36% Similarity=0.353 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...|.++|.+|+|||||...+....
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568899999999999999997653
No 397
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.92 E-value=0.028 Score=50.95 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||.+.++.-.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45799999999999999999998654
No 398
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.92 E-value=0.034 Score=44.31 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..-|.|+|.+|+|||||...+.+..
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4578899999999999999998754
No 399
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.92 E-value=0.033 Score=44.39 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
--|.|+|.+|+|||||...+.+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 467899999999999999998653
No 400
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.92 E-value=0.032 Score=57.06 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=20.2
Q ss_pred CceEEEEEeCCCCchHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQL 198 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v 198 (347)
...+++|+|+.|.||||+.+.+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4579999999999999999998
No 401
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.92 E-value=0.032 Score=46.62 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.+|.|.|+.|+||||+++.+....
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999998764
No 402
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.91 E-value=0.031 Score=45.02 Aligned_cols=24 Identities=38% Similarity=0.407 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
--|.|+|.+|+|||||...+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 457899999999999999998654
No 403
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.91 E-value=0.031 Score=44.87 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.--|.|+|.+|+|||||...+.+..
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4578899999999999999998653
No 404
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.91 E-value=0.026 Score=45.16 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
--|.++|.+|+|||||...+.+..
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 457899999999999999998753
No 405
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.89 E-value=0.034 Score=45.05 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...|.|+|.+|+|||||...+.+..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 4578899999999999999998753
No 406
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.89 E-value=0.055 Score=45.74 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=19.9
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...|.|.|+.|+||||+++.+.+..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999887
No 407
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.87 E-value=0.037 Score=44.95 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.--|.|+|.+|+|||||...+.+..
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 4578899999999999999998754
No 408
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.83 E-value=0.034 Score=44.54 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...|.|+|.+|+|||||...+.+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4578899999999999999998543
No 409
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.83 E-value=0.035 Score=44.83 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.--|.|+|.+|+|||||+..+.+..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568899999999999999998753
No 410
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.80 E-value=0.034 Score=44.66 Aligned_cols=24 Identities=33% Similarity=0.349 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
--|.++|.+|+|||||...+.+..
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 357899999999999999988653
No 411
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.80 E-value=0.076 Score=45.00 Aligned_cols=51 Identities=20% Similarity=0.212 Sum_probs=32.6
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIG 231 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 231 (347)
...++.|.|.+|+|||+||.+++... . ...-..+++++.. .+...+.+.+.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~-~-~~~~~~v~~~s~E--~~~~~~~~~~~ 79 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKG-A-EEYGEPGVFVTLE--ERARDLRREMA 79 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-H-HHHCCCEEEEESS--SCHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-H-HhcCCCceeeccc--CCHHHHHHHHH
Confidence 45789999999999999998876543 1 1122345565544 34555555443
No 412
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.77 E-value=0.036 Score=45.03 Aligned_cols=25 Identities=40% Similarity=0.526 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.--|+|+|.+|+|||||...+....
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999988754
No 413
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.76 E-value=0.035 Score=44.58 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..-|.|+|.+|+|||||+..+.+..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 4568899999999999999998654
No 414
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.75 E-value=0.25 Score=56.05 Aligned_cols=85 Identities=20% Similarity=0.270 Sum_probs=52.6
Q ss_pred HHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHHhcCCCCc----ccccc
Q 038882 169 VWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGKKIDLFSE----SWKNK 244 (347)
Q Consensus 169 l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----~~~~~ 244 (347)
+++.+...+ +-+.++|++|+|||+||+.+.... ..+ ....++.+...+...+.+.+-..+..... .....
T Consensus 1259 ll~~~l~~~-~~vLL~GPpGtGKT~la~~~l~~~----~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~ 1332 (2695)
T 4akg_A 1259 IFYDLLNSK-RGIILCGPPGSGKTMIMNNALRNS----SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPK 1332 (2695)
T ss_dssp HHHHHHHHT-CEEEEECSTTSSHHHHHHHHHHSC----SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEB
T ss_pred HHHHHHHCC-CeEEEECCCCCCHHHHHHHHHhcC----CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCC
Confidence 334444433 677899999999999998776543 222 34567777777777776666655432100 00000
Q ss_pred ChHHHHHHHHHHhcCCcEEEEEeCCCC
Q 038882 245 SLVEKSCAIFKILSNKKFVLLLDDVWE 271 (347)
Q Consensus 245 ~~~~~~~~l~~~l~~kr~LlVlDdv~~ 271 (347)
-.++++++.+||+..
T Consensus 1333 ------------~~gk~~VlFiDEinm 1347 (2695)
T 4akg_A 1333 ------------SDIKNLVLFCDEINL 1347 (2695)
T ss_dssp ------------SSSSCEEEEEETTTC
T ss_pred ------------CCCceEEEEeccccc
Confidence 036789999999744
No 415
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.75 E-value=0.035 Score=44.43 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (347)
.--|.|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999998764
No 416
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.73 E-value=0.094 Score=44.25 Aligned_cols=106 Identities=12% Similarity=0.022 Sum_probs=51.0
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEE-ecCCCChHHHHHHHHHhcCCCCccccccChHHHHHHHHHH
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVV-VSKDLNLEKVQEDIGKKIDLFSESWKNKSLVEKSCAIFKI 256 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~-vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 256 (347)
..+..++|..|.||||-+.....+. . .......++-. .+..+. . .+.+.++.......-.+..+.. +.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~-~-~~g~kvli~kp~~D~Ryg-~----~i~sr~G~~~~a~~i~~~~di~----~~ 87 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRF-Q-IAQYKCLVIKYAKDTRYS-S----SFCTHDRNTMEALPACLLRDVA----QE 87 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH-H-TTTCCEEEEEETTCCCC----------------CEEEEESSGGGGH----HH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHH-H-HCCCeEEEEeecCCccch-H----HHHhhcCCeeEEEecCCHHHHH----HH
Confidence 4688999999999998777666665 2 23333333322 222223 3 3444444322211111222222 22
Q ss_pred hcCCcEEEEEeCCCCcccccccccCCCCCCCCcEEEEecCC
Q 038882 257 LSNKKFVLLLDDVWEPVDLTKVGVPIPNSTNASKVLFTTRY 297 (347)
Q Consensus 257 l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~ 297 (347)
. ++--+|++|++.-.....++...+.+ .|-.||+|.++
T Consensus 88 ~-~~~dvViIDEaQF~~~v~el~~~l~~--~gi~VI~~GL~ 125 (234)
T 2orv_A 88 A-LGVAVIGIDEGQFFPDIVEFCEAMAN--AGKTVIVAALD 125 (234)
T ss_dssp H-TTCSEEEESSGGGCTTHHHHHHHHHH--TTCEEEEECCS
T ss_pred h-ccCCEEEEEchhhhhhHHHHHHHHHh--CCCEEEEEecc
Confidence 2 33349999998443223333222222 56789999988
No 417
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.72 E-value=0.035 Score=44.38 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.-|.|+|.+|+|||||...+....
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999988653
No 418
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.71 E-value=0.025 Score=57.15 Aligned_cols=46 Identities=26% Similarity=0.312 Sum_probs=36.5
Q ss_pred CcccchhhhHHHHHHHhhc-------------cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 157 PRIIGQESIFDDVWRCIIE-------------EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 157 ~~~vGR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+.|.++..+.|.+.+.- .....+.++|++|+|||+||+.+++..
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 4567888888888776642 134568899999999999999999876
No 419
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.71 E-value=0.037 Score=50.84 Aligned_cols=26 Identities=38% Similarity=0.516 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||.+.+..-.
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 45799999999999999999998643
No 420
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.70 E-value=0.021 Score=49.33 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
....|.|.|..|+||||+++.+....
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999887654
No 421
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.70 E-value=0.041 Score=49.73 Aligned_cols=27 Identities=37% Similarity=0.528 Sum_probs=24.5
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
....+++|+|..|+|||||.+.+.+..
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 466899999999999999999999876
No 422
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.67 E-value=0.032 Score=49.39 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=18.8
Q ss_pred EEEEEeCCCCchHHHHHHHHHh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~ 201 (347)
-|+|+|.+|+|||||.+.++..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4599999999999999998754
No 423
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.67 E-value=0.037 Score=45.78 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..-|.|+|.+|+|||||+..+....
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578899999999999999998754
No 424
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.67 E-value=0.036 Score=45.41 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..-|.|+|.+|+|||||...+....
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC
Confidence 4578999999999999999987653
No 425
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.66 E-value=0.025 Score=46.74 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=21.7
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHh
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (347)
.....++|+|.+|+|||||.+.+...
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999987653
No 426
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=93.65 E-value=0.13 Score=46.66 Aligned_cols=27 Identities=33% Similarity=0.327 Sum_probs=22.3
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+...++...|-||+||||+|..++...
T Consensus 16 ~~~~i~v~sgKGGvGKTTvaanLA~~l 42 (354)
T 2woj_A 16 TTHKWIFVGGKGGVGKTTSSCSIAIQM 42 (354)
T ss_dssp SSCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 345667777999999999999988776
No 427
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.64 E-value=0.038 Score=44.99 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.--|+|+|.+|+|||||...+.+..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568999999999999999998654
No 428
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.64 E-value=0.029 Score=45.98 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=20.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHH
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNN 200 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~ 200 (347)
....|.|+|.+|+|||||...+..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 346789999999999999999853
No 429
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.64 E-value=0.047 Score=52.27 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+|.++|++|.||||+|+.+....
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998765
No 430
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.63 E-value=0.056 Score=49.14 Aligned_cols=26 Identities=38% Similarity=0.528 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
....++|+|+.|+|||||++.+...+
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998765
No 431
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.63 E-value=0.041 Score=43.96 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.--|.++|.+|+|||||...+.+..
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3568899999999999999988754
No 432
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.63 E-value=0.041 Score=45.13 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...-|+|+|.+|+|||||+..+.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34678999999999999999998754
No 433
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.61 E-value=0.042 Score=45.35 Aligned_cols=25 Identities=40% Similarity=0.577 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..-|.|+|.+|+|||||+..+.+..
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4578899999999999999988654
No 434
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.61 E-value=0.037 Score=45.42 Aligned_cols=26 Identities=38% Similarity=0.497 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
....|+|+|.+|+|||||...+.+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34578999999999999999988754
No 435
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.59 E-value=0.047 Score=44.52 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..--|.|+|.+|+|||||+..+.+..
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 44678899999999999999998753
No 436
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.58 E-value=0.037 Score=44.14 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=21.3
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (347)
...-|+|+|.+|+|||||+..+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999998754
No 437
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.56 E-value=0.041 Score=44.76 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.--|+|+|.+|+|||||...+....
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4568899999999999999998763
No 438
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=93.52 E-value=0.26 Score=41.78 Aligned_cols=38 Identities=18% Similarity=0.153 Sum_probs=25.7
Q ss_pred hhhhHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 162 QESIFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 162 R~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
|+...+.+..++.. + -+.|+|+.|.|||.+|..+....
T Consensus 95 ~~~Q~~ai~~~~~~-~--~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 95 RDYQEKALERWLVD-K--RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CHHHHHHHHHHTTT-S--EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhC-C--CEEEEeCCCCCHHHHHHHHHHHc
Confidence 44444444444433 2 37789999999999998887653
No 439
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.52 E-value=0.041 Score=44.35 Aligned_cols=27 Identities=33% Similarity=0.412 Sum_probs=22.3
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.....|.++|.+|+|||||...+.+..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 445778999999999999999987643
No 440
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.51 E-value=0.041 Score=44.59 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.--|.|+|.+|+|||||...+.+..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4578999999999999999998754
No 441
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.50 E-value=0.04 Score=45.64 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...|.|+|.+|+|||||...+.+..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578899999999999999998653
No 442
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.49 E-value=0.044 Score=44.42 Aligned_cols=25 Identities=24% Similarity=0.195 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.--|.|+|.+|+|||||...+.+..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568899999999999999998654
No 443
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.49 E-value=0.041 Score=44.79 Aligned_cols=25 Identities=36% Similarity=0.389 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.--|.++|.+|+|||||...+.+..
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578899999999999999998764
No 444
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.48 E-value=0.045 Score=44.54 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..-|.|+|.+|+|||||...+....
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCC
Confidence 4568999999999999999998743
No 445
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.47 E-value=0.06 Score=47.65 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=26.1
Q ss_pred HHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 166 FDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 166 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+++|.+.+. ..+++++|++|+|||||.+.+. ..
T Consensus 156 i~~L~~~l~---G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLE---GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTT---TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhcc---CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 455555554 3688999999999999999998 54
No 446
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.46 E-value=0.038 Score=45.07 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=21.6
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHh
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (347)
....-|.|+|.+|+|||||+..+...
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhC
Confidence 34567899999999999999998643
No 447
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.45 E-value=0.042 Score=44.62 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.--|.|+|.+|+|||||...+.+..
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4568999999999999999998754
No 448
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.41 E-value=0.046 Score=48.37 Aligned_cols=25 Identities=40% Similarity=0.626 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...|+|+|.+|+|||||...+....
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 4689999999999999999998753
No 449
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.40 E-value=0.1 Score=50.11 Aligned_cols=44 Identities=18% Similarity=0.105 Sum_probs=31.3
Q ss_pred ccchhhhHHHHHHHh--hccCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 159 IIGQESIFDDVWRCI--IEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 159 ~vGR~~~~~~l~~~L--~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.+.|.+-.+.+.+.. ......+|.+.|++|+||||+|+.+....
T Consensus 351 ~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L 396 (546)
T 2gks_A 351 WFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATML 396 (546)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHh
Confidence 344444445555544 22345789999999999999999998865
No 450
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.40 E-value=0.041 Score=44.95 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=20.5
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (347)
..-|.++|.+|+|||||++.+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 457889999999999999977664
No 451
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=93.39 E-value=0.043 Score=46.03 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.4
Q ss_pred EEEEEeCCCCchHHHHHHHHHh
Q 038882 180 IIGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~ 201 (347)
-|.|+|.+|+|||+|+..+.+.
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4789999999999999998764
No 452
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.38 E-value=0.043 Score=44.99 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.--|.|+|.+|+|||||+..+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568999999999999999988653
No 453
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.37 E-value=0.046 Score=44.37 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.--|.|+|.+|+|||||...+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468899999999999999988653
No 454
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.36 E-value=0.042 Score=45.11 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=20.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.--|.|+|.+|+|||||...+.+..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC--
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4578899999999999999987543
No 455
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.36 E-value=0.059 Score=48.59 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=23.6
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.+..+++|+|.+|+|||||+..+....
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999987654
No 456
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.35 E-value=0.047 Score=44.19 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..-|.|+|.+|+|||||...+....
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCC
Confidence 4578999999999999999988653
No 457
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.35 E-value=0.056 Score=44.99 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.--|.|+|.+|+|||||...+.+..
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 4568899999999999999988753
No 458
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=93.33 E-value=0.12 Score=46.16 Aligned_cols=27 Identities=37% Similarity=0.401 Sum_probs=22.7
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+...++.+.|-||+||||+|..++...
T Consensus 17 ~~~~i~v~sgkGGvGKTTva~~LA~~l 43 (329)
T 2woo_A 17 TSLKWIFVGGKGGVGKTTTSCSLAIQM 43 (329)
T ss_dssp TTCCEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 445677778999999999999998877
No 459
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.31 E-value=0.045 Score=44.31 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.-.|.|+|.+|+|||||...+.+..
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3578899999999999999998754
No 460
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.31 E-value=0.044 Score=44.87 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...-|.|+|.+|+|||||+..+....
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 35678999999999999999987653
No 461
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.30 E-value=0.11 Score=43.14 Aligned_cols=50 Identities=22% Similarity=0.369 Sum_probs=32.0
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHH
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGK 232 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 232 (347)
.-|+|-|..|+||||+++.+.+.. ...++.+ ...-.......+.+++++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L---~~~~~v~-~~~eP~~t~~g~~ir~~l~ 52 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL---VKDYDVI-MTREPGGVPTGEEIRKIVL 52 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH---TTTSCEE-EEESSTTCHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH---HCCCCEE-EeeCCCCChHHHHHHHHHh
Confidence 468889999999999999999887 2344433 2222222334455555543
No 462
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.29 E-value=0.042 Score=44.95 Aligned_cols=25 Identities=32% Similarity=0.296 Sum_probs=20.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.--|.|+|.+|+|||||...+.+..
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4568899999999999999987643
No 463
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.29 E-value=0.083 Score=51.99 Aligned_cols=62 Identities=13% Similarity=0.237 Sum_probs=39.1
Q ss_pred hHHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHHHHHHHH
Q 038882 165 IFDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKVQEDIGK 232 (347)
Q Consensus 165 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 232 (347)
..+.+...|... .+..|+||||.|||+.+..+...... . ...+.++...+..+..++..+..
T Consensus 194 Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~--~--~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 194 QKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVK--Q--GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp HHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHH--T--TCCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHh--C--CCeEEEEcCchHHHHHHHHHHHh
Confidence 344555556543 46789999999999665554444312 1 23577777776667777766643
No 464
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.28 E-value=0.045 Score=51.49 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||++.++.-.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 55799999999999999999998765
No 465
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.27 E-value=0.042 Score=44.17 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...|.|+|.+|+|||||...+.+..
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578899999999999999998653
No 466
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.27 E-value=0.051 Score=44.66 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..-|.|+|.+|+|||||...+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568899999999999999998654
No 467
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.26 E-value=0.047 Score=45.58 Aligned_cols=23 Identities=35% Similarity=0.418 Sum_probs=20.2
Q ss_pred ceEEEEEeCCCCchHHHHHHHHH
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNN 200 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~ 200 (347)
..-|.|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35689999999999999999874
No 468
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.24 E-value=0.055 Score=46.94 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...|+++|.+|+|||||...+....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999998654
No 469
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.24 E-value=0.055 Score=43.50 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (347)
..-+.|.|.+|+||||||..+...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 457889999999999999998764
No 470
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.23 E-value=0.051 Score=51.28 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+|.++|++|+||||+++.+....
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34688999999999999999998876
No 471
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.18 E-value=0.043 Score=50.90 Aligned_cols=21 Identities=43% Similarity=0.585 Sum_probs=19.6
Q ss_pred EEEEeCCCCchHHHHHHHHHh
Q 038882 181 IGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 181 i~I~G~~GiGKTtLa~~v~~~ 201 (347)
++|+|.+|+|||||.+.++..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 999999999999999999864
No 472
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.16 E-value=0.17 Score=42.27 Aligned_cols=25 Identities=36% Similarity=0.319 Sum_probs=23.0
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...|.+-|+.|+||||+++.+.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4688999999999999999999987
No 473
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.15 E-value=0.051 Score=44.14 Aligned_cols=25 Identities=36% Similarity=0.396 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..-|.++|.+|+|||||+..+.+..
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578899999999999999998753
No 474
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.14 E-value=0.047 Score=45.40 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=20.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (347)
.--|.|+|.+|+|||||...+.+.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 356889999999999999998764
No 475
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.13 E-value=0.051 Score=49.24 Aligned_cols=25 Identities=36% Similarity=0.389 Sum_probs=22.0
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..+++|+|++|+|||||++.+....
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCEEEEECCCCccHHHHHHHHhccc
Confidence 3588999999999999999998654
No 476
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.12 E-value=0.048 Score=46.26 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
....|+|+|.+|+|||||...+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 45688999999999999999998754
No 477
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.11 E-value=0.052 Score=44.85 Aligned_cols=25 Identities=28% Similarity=0.238 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.--|.|+|.+|+|||||+..+.+..
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568899999999999999988653
No 478
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.11 E-value=0.055 Score=44.60 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..-|.|+|.+|+|||||...+....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999999988753
No 479
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.06 E-value=0.053 Score=44.54 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..-|.|+|.+|+|||||+..+.+..
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCC
Confidence 4578999999999999999987653
No 480
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.97 E-value=0.06 Score=44.14 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..-|.|+|.+|+|||||...+....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3568899999999999999998754
No 481
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.95 E-value=0.092 Score=50.80 Aligned_cols=26 Identities=31% Similarity=0.206 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+|.|.|++|+||||+|+.+....
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998876
No 482
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.93 E-value=0.064 Score=43.59 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
....|.|+|.+|+|||||...+.+..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 35788999999999999999987654
No 483
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.93 E-value=0.057 Score=45.35 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...|.|+|.+|+|||||+..+....
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678999999999999999987653
No 484
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.92 E-value=0.059 Score=44.39 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..-|+|+|.+|+|||||...+....
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4578999999999999999988653
No 485
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=92.91 E-value=0.15 Score=43.00 Aligned_cols=41 Identities=20% Similarity=0.218 Sum_probs=28.0
Q ss_pred CceEEEEEe-CCCCchHHHHHHHHHhhhccCCCCCEEEEEEecC
Q 038882 177 QVGIIGLYG-AGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSK 219 (347)
Q Consensus 177 ~~~vi~I~G-~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 219 (347)
..++|+|++ -||+||||+|..++... ... .=..++.|....
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~l-a~~-~g~~VlliD~D~ 44 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFAL-SQE-PDIHVLAVDISL 44 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHH-TTS-TTCCEEEEECCT
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHH-HhC-cCCCEEEEECCC
Confidence 356787774 58999999999999887 222 123456666543
No 486
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.90 E-value=0.033 Score=44.78 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=10.3
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (347)
..-|.|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999988754
No 487
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=92.89 E-value=0.15 Score=42.25 Aligned_cols=43 Identities=26% Similarity=0.162 Sum_probs=29.9
Q ss_pred EEEEE-eCCCCchHHHHHHHHHhhhccCCCCCEEEEEEecCCCChHHH
Q 038882 180 IIGLY-GAGGVGKTTLLKQLNNKLCHERHDFDIVIWVVVSKDLNLEKV 226 (347)
Q Consensus 180 vi~I~-G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 226 (347)
+|+|+ +-||+||||++..++... ... - .++.+......+....
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~l-a~~--g-~VlliD~D~q~~~~~~ 45 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYL-ALQ--G-ETLLIDGDPNRSATGW 45 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH-HTT--S-CEEEEEECTTCHHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHH-Hhc--C-CEEEEECCCCCCHHHH
Confidence 45664 779999999999999887 322 2 5677777665544433
No 488
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.88 E-value=0.072 Score=41.75 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNK 201 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (347)
..+.+|+|+.|.|||||...++.-
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 368899999999999999988653
No 489
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=92.83 E-value=0.15 Score=45.57 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..++...|.||+||||+|..++...
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~l 38 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWM 38 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHH
Confidence 3566777999999999999988776
No 490
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=92.83 E-value=0.057 Score=47.92 Aligned_cols=26 Identities=38% Similarity=0.606 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
+...|+|+|.+|+|||||...+....
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 46789999999999999999998753
No 491
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.74 E-value=0.065 Score=50.07 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=24.3
Q ss_pred cCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 176 EQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.....++|+|+.|+|||||++.+.+..
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 466799999999999999999999875
No 492
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=92.67 E-value=0.04 Score=44.67 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...|.|+|.+|+|||||...+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578899999999999999987654
No 493
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=92.62 E-value=0.062 Score=43.69 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=20.1
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 178 VGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
..-|.|+|.+|+|||||...+.+..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999987543
No 494
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.62 E-value=0.077 Score=46.90 Aligned_cols=34 Identities=29% Similarity=0.476 Sum_probs=26.2
Q ss_pred HHHHHHHhhccCceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 166 FDDVWRCIIEEQVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 166 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
++++.+.+. ..+++|+|++|+|||||.+.+....
T Consensus 160 v~~lf~~l~---geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 160 IEELKEYLK---GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp HHHHHHHHS---SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred HHHHHHHhc---CCeEEEECCCCCcHHHHHHHhcccc
Confidence 455555543 3588999999999999999997654
No 495
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=92.61 E-value=0.08 Score=51.61 Aligned_cols=26 Identities=35% Similarity=0.385 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+|.|.|++|+||||+|+.+....
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998875
No 496
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.51 E-value=0.14 Score=44.05 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
....|+++|.+|+|||||...+....
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678999999999999999998754
No 497
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=92.49 E-value=0.12 Score=48.19 Aligned_cols=43 Identities=23% Similarity=0.409 Sum_probs=32.0
Q ss_pred cchhhhHHHHHHHhhcc-----------CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 160 IGQESIFDDVWRCIIEE-----------QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 160 vGR~~~~~~l~~~L~~~-----------~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.|.++-++.+.+.+... ....++|+|.+|+|||||.+.+....
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 45666677776666421 23578999999999999999998764
No 498
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.49 E-value=0.066 Score=51.44 Aligned_cols=20 Identities=40% Similarity=0.797 Sum_probs=0.0
Q ss_pred EEEEEeCCCCchHHHHHHHH
Q 038882 180 IIGLYGAGGVGKTTLLKQLN 199 (347)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~ 199 (347)
+++|+|+.|+|||||++.+.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~ 68 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILA 68 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
No 499
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=92.49 E-value=0.095 Score=50.90 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHhh
Q 038882 177 QVGIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
...+++|+|+.|+|||||++.+..-+
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 56799999999999999999997755
No 500
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.48 E-value=0.068 Score=50.40 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=22.2
Q ss_pred eEEEEEeCCCCchHHHHHHHHHhh
Q 038882 179 GIIGLYGAGGVGKTTLLKQLNNKL 202 (347)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (347)
.+++|+|+.|+|||||.+.+..-.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 799999999999999999998765
Done!