BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038885
(406 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VZT|A Chain A, Complex Of Amycolatopsis Orientalis Exo-Chitosanase Csxa
E541a With Pnp-Beta-D-Glucosamine
pdb|2VZT|B Chain B, Complex Of Amycolatopsis Orientalis Exo-Chitosanase Csxa
E541a With Pnp-Beta-D-Glucosamine
pdb|2VZV|A Chain A, Substrate Complex Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa E541a With Chitosan
pdb|2VZV|B Chain B, Substrate Complex Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa E541a With Chitosan
Length = 1032
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 61 RCLTHMFAAEIFMHRFLLSSPVRTLNPEEADWFYTPIYPTCDLT 104
LT E+ + + LS+ TLN +DW+YTP DL+
Sbjct: 750 NVLTDSSGKEVSRNVYWLSTKADTLNWGGSDWYYTPQSAFADLS 793
>pdb|2VZU|A Chain A, Complex Of Amycolatopsis Orientalis Exo-Chitosanase Csxa
D469a With Pnp-Beta-D-Glucosamine
pdb|2VZU|B Chain B, Complex Of Amycolatopsis Orientalis Exo-Chitosanase Csxa
D469a With Pnp-Beta-D-Glucosamine
Length = 1032
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 61 RCLTHMFAAEIFMHRFLLSSPVRTLNPEEADWFYTPIYPTCDLT 104
LT E+ + + LS+ TLN +DW+YTP DL+
Sbjct: 750 NVLTDSSGKEVSRNVYWLSTKADTLNWGGSDWYYTPQSAFADLS 793
>pdb|2VZS|A Chain A, Chitosan Product Complex Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa
pdb|2VZS|B Chain B, Chitosan Product Complex Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa
pdb|2X05|A Chain A, Inhibition Of The Exo-Beta-D-Glucosaminidase Csxa By A
Glucosamine-Configured Castanospermine And An Amino-
Australine Analogue
pdb|2X05|B Chain B, Inhibition Of The Exo-Beta-D-Glucosaminidase Csxa By A
Glucosamine-Configured Castanospermine And An Amino-
Australine Analogue
pdb|2X09|A Chain A, Inhibition Of The Exo-Beta-D-Glucosaminidase Csxa By A
Glucosamine-Configured Castanospermine And An Amino-
Australine Analogue
pdb|2X09|B Chain B, Inhibition Of The Exo-Beta-D-Glucosaminidase Csxa By A
Glucosamine-Configured Castanospermine And An Amino-
Australine Analogue
Length = 1032
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 61 RCLTHMFAAEIFMHRFLLSSPVRTLNPEEADWFYTPIYPTCDLT 104
LT E+ + + LS+ TLN +DW+YTP DL+
Sbjct: 750 NVLTDSSGKEVSRNVYWLSTKADTLNWGGSDWYYTPQSAFADLS 793
>pdb|2VZO|A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa
pdb|2VZO|B Chain B, Crystal Structure Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa
Length = 1032
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 61 RCLTHMFAAEIFMHRFLLSSPVRTLNPEEADWFYTPIYPTCDLT 104
LT E+ + + LS+ TLN +DW+YTP DL+
Sbjct: 750 NVLTDSSGKEVSRNVYWLSTKADTLNWGGSDWYYTPQSAFADLS 793
>pdb|3LYU|A Chain A, Crystal Structure Of The C-Terminal Domain (Residues
83-215) Of Pf1911 Hydrogenase From Pyrococcus Furiosus,
Northeast Structural Genomics Consortium Target Pfr246a
pdb|3LYU|B Chain B, Crystal Structure Of The C-Terminal Domain (Residues
83-215) Of Pf1911 Hydrogenase From Pyrococcus Furiosus,
Northeast Structural Genomics Consortium Target Pfr246a
pdb|3LYU|C Chain C, Crystal Structure Of The C-Terminal Domain (Residues
83-215) Of Pf1911 Hydrogenase From Pyrococcus Furiosus,
Northeast Structural Genomics Consortium Target Pfr246a
pdb|3LYU|D Chain D, Crystal Structure Of The C-Terminal Domain (Residues
83-215) Of Pf1911 Hydrogenase From Pyrococcus Furiosus,
Northeast Structural Genomics Consortium Target Pfr246a
pdb|3LYU|E Chain E, Crystal Structure Of The C-Terminal Domain (Residues
83-215) Of Pf1911 Hydrogenase From Pyrococcus Furiosus,
Northeast Structural Genomics Consortium Target Pfr246a
pdb|3LYU|F Chain F, Crystal Structure Of The C-Terminal Domain (Residues
83-215) Of Pf1911 Hydrogenase From Pyrococcus Furiosus,
Northeast Structural Genomics Consortium Target Pfr246a
Length = 142
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 12/115 (10%)
Query: 291 FGCIPVIIA-DDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSIPPEVILRKQRLLANP 349
FG I I A IV + A W+EIG V T+ + P VIL+++
Sbjct: 18 FGKILAIGAYTGIVEVYPIAKAWQEIGNDVT--------TLHVTFEPXVILKEE---LEK 66
Query: 350 SMKRAMLFPQPAQPGDAFHQILNGLARKLPHDKSTYLKPGGKFLNWTSGPVGDLK 404
++ R ++ P P P F ++++L L+ L + GPVGD K
Sbjct: 67 AVTRHIVEPVPLNPNQDFLANXKNVSQRLKEKVRELLESEDWDLVFXVGPVGDQK 121
>pdb|3LRX|A Chain A, Crystal Structure Of The C-Terminal Domain (Residues
78-226) Of Pf1911 Hydrogenase From Pyrococcus Furiosus,
Northeast Structural Genomics Consortium Target Pfr246a
pdb|3LRX|B Chain B, Crystal Structure Of The C-Terminal Domain (Residues
78-226) Of Pf1911 Hydrogenase From Pyrococcus Furiosus,
Northeast Structural Genomics Consortium Target Pfr246a
pdb|3LRX|C Chain C, Crystal Structure Of The C-Terminal Domain (Residues
78-226) Of Pf1911 Hydrogenase From Pyrococcus Furiosus,
Northeast Structural Genomics Consortium Target Pfr246a
pdb|3LRX|D Chain D, Crystal Structure Of The C-Terminal Domain (Residues
78-226) Of Pf1911 Hydrogenase From Pyrococcus Furiosus,
Northeast Structural Genomics Consortium Target Pfr246a
pdb|3LRX|E Chain E, Crystal Structure Of The C-Terminal Domain (Residues
78-226) Of Pf1911 Hydrogenase From Pyrococcus Furiosus,
Northeast Structural Genomics Consortium Target Pfr246a
pdb|3LRX|F Chain F, Crystal Structure Of The C-Terminal Domain (Residues
78-226) Of Pf1911 Hydrogenase From Pyrococcus Furiosus,
Northeast Structural Genomics Consortium Target Pfr246a
Length = 158
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 12/115 (10%)
Query: 291 FGCIPVIIA-DDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSIPPEVILRKQRLLANP 349
FG I I A IV + A W+EIG V T+ + P VIL+++
Sbjct: 23 FGKILAIGAYTGIVEVYPIAKAWQEIGNDVT--------TLHVTFEPXVILKEE---LEK 71
Query: 350 SMKRAMLFPQPAQPGDAFHQILNGLARKLPHDKSTYLKPGGKFLNWTSGPVGDLK 404
++ R ++ P P P F ++++L L+ L + GPVGD K
Sbjct: 72 AVTRHIVEPVPLNPNQDFLANXKNVSQRLKEKVRELLESEDWDLVFXVGPVGDQK 126
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 245 NFKNNPLFDISTDHPTTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVL 304
+F NP +ST P ++ + A F + L WA + V VVF + D V+
Sbjct: 68 HFAANPEVRLSTTEPIVHFNENVVATFNV--LEWARQTG--VRTVVFASSSTVYGDADVI 123
Query: 305 PFADAIPWEEIGMFVAEE 322
P + P++ I ++ A +
Sbjct: 124 PTPEEEPYKPISVYGAAK 141
>pdb|2NYD|A Chain A, Crystal Structure Of Staphylococcus Aureus Hypothetical
Protein Sa1388
pdb|2NYD|B Chain B, Crystal Structure Of Staphylococcus Aureus Hypothetical
Protein Sa1388
Length = 370
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 6/45 (13%)
Query: 295 PVIIADDIVL-----PFADAIPWEEIGMFVAEEDVPKLDTILTSI 334
P+ IAD + L PF+ A W+ +G+ + +EDV ++ +LT++
Sbjct: 4 PMKIADLMTLLDHHVPFSTAESWDNVGLLIGDEDV-EVTGVLTAL 47
>pdb|3LNL|A Chain A, Crystal Structure Of Staphylococcus Aureus Protein Sa1388
pdb|3LNL|B Chain B, Crystal Structure Of Staphylococcus Aureus Protein Sa1388
Length = 370
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 6/45 (13%)
Query: 295 PVIIADDIVL-----PFADAIPWEEIGMFVAEEDVPKLDTILTSI 334
P+ IAD + L PF+ A W+ +G+ + +EDV ++ +LT++
Sbjct: 4 PMKIADLMTLLDHHVPFSTAESWDNVGLLIGDEDV-EVTGVLTAL 47
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 245 NFKNNPLFDISTDHPTTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVL 304
+F NP +ST P ++ + A F + L WA + V VVF + D V+
Sbjct: 64 HFAANPEVRLSTTEPIVHFNENVVATFNV--LEWARQTG--VRTVVFASSSTVYGDADVI 119
Query: 305 PFADAIPWEEIGMFVAEE 322
P + P++ I ++ A +
Sbjct: 120 PTPEEEPYKPISVYGAAK 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.458
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,129,971
Number of Sequences: 62578
Number of extensions: 548769
Number of successful extensions: 816
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 812
Number of HSP's gapped (non-prelim): 10
length of query: 406
length of database: 14,973,337
effective HSP length: 101
effective length of query: 305
effective length of database: 8,652,959
effective search space: 2639152495
effective search space used: 2639152495
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)