Query 038885
Match_columns 406
No_of_seqs 189 out of 827
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 04:14:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038885.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038885hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03016 Exostosin: Exostosin 100.0 2.7E-58 5.8E-63 449.7 21.5 285 37-334 2-302 (302)
2 KOG1021 Acetylglucosaminyltran 100.0 4.6E-54 1E-58 444.4 24.9 324 37-382 112-459 (464)
3 KOG2264 Exostosin EXT1L [Signa 100.0 1.2E-27 2.7E-32 240.5 17.6 300 37-384 193-532 (907)
4 KOG1022 Acetylglucosaminyltran 99.8 1.6E-19 3.4E-24 181.8 15.9 303 39-396 98-420 (691)
5 cd03801 GT1_YqgM_like This fam 95.6 0.02 4.3E-07 54.7 5.5 86 259-347 266-353 (374)
6 PF00534 Glycos_transf_1: Glyc 95.5 0.014 3.1E-07 51.5 3.8 84 260-346 84-169 (172)
7 cd03820 GT1_amsD_like This fam 95.4 0.057 1.2E-06 51.4 7.8 86 260-347 244-331 (348)
8 PF00852 Glyco_transf_10: Glyc 95.3 0.036 7.7E-07 56.0 6.2 92 238-335 190-296 (349)
9 cd03819 GT1_WavL_like This fam 95.2 0.067 1.4E-06 52.3 7.8 95 259-357 254-352 (355)
10 cd03814 GT1_like_2 This family 95.0 0.055 1.2E-06 52.4 6.7 85 260-347 258-344 (364)
11 cd03822 GT1_ecORF704_like This 94.7 0.05 1.1E-06 52.9 5.5 84 260-347 259-346 (366)
12 cd03794 GT1_wbuB_like This fam 94.7 0.046 1E-06 53.0 5.2 85 260-347 286-377 (394)
13 cd03818 GT1_ExpC_like This fam 94.2 0.18 4E-06 51.0 8.3 115 238-356 266-386 (396)
14 cd03808 GT1_cap1E_like This fa 93.9 0.29 6.3E-06 46.7 8.8 86 259-347 254-341 (359)
15 cd04962 GT1_like_5 This family 93.7 0.27 5.9E-06 48.4 8.4 86 260-348 262-349 (371)
16 cd03807 GT1_WbnK_like This fam 93.6 0.095 2.1E-06 50.4 4.8 92 260-357 260-353 (365)
17 cd03800 GT1_Sucrose_synthase T 93.4 0.18 3.9E-06 50.1 6.6 94 260-357 294-389 (398)
18 cd03823 GT1_ExpE7_like This fa 93.2 0.15 3.3E-06 49.1 5.5 85 260-347 254-341 (359)
19 TIGR03088 stp2 sugar transfera 93.1 0.18 3.9E-06 50.3 5.9 84 259-345 263-348 (374)
20 cd05844 GT1_like_7 Glycosyltra 92.7 0.53 1.2E-05 46.3 8.6 94 260-357 256-357 (367)
21 PLN02871 UDP-sulfoquinovose:DA 92.6 0.38 8.2E-06 50.1 7.9 85 260-347 323-412 (465)
22 PRK15427 colanic acid biosynth 92.6 0.76 1.7E-05 47.1 10.0 94 260-357 290-392 (406)
23 cd03798 GT1_wlbH_like This fam 92.5 0.14 3E-06 49.1 4.1 71 260-333 270-340 (377)
24 cd03809 GT1_mtfB_like This fam 92.2 0.22 4.7E-06 48.4 5.1 83 260-347 264-348 (365)
25 cd03821 GT1_Bme6_like This fam 92.1 0.19 4.2E-06 48.4 4.6 83 260-347 273-357 (375)
26 TIGR03449 mycothiol_MshA UDP-N 91.2 0.36 7.9E-06 48.7 5.6 93 260-357 294-388 (405)
27 TIGR02149 glgA_Coryne glycogen 90.8 0.37 8.1E-06 48.0 5.2 86 259-347 271-364 (388)
28 PRK09814 beta-1,6-galactofuran 90.4 0.35 7.6E-06 48.1 4.6 83 260-348 218-311 (333)
29 cd04951 GT1_WbdM_like This fam 90.1 0.75 1.6E-05 44.8 6.6 81 260-345 254-337 (360)
30 PF13692 Glyco_trans_1_4: Glyc 89.8 0.28 6.2E-06 41.2 2.9 68 260-332 62-130 (135)
31 PF13524 Glyco_trans_1_2: Glyc 89.6 0.42 9.1E-06 37.9 3.6 80 272-356 2-82 (92)
32 cd03805 GT1_ALG2_like This fam 88.9 0.75 1.6E-05 45.9 5.7 84 260-347 291-376 (392)
33 PRK10307 putative glycosyl tra 88.7 0.6 1.3E-05 47.4 4.9 94 260-357 295-394 (412)
34 PRK15484 lipopolysaccharide 1, 88.5 0.79 1.7E-05 46.4 5.6 94 260-357 268-364 (380)
35 cd03792 GT1_Trehalose_phosphor 88.3 4.4 9.6E-05 40.4 10.8 92 260-357 265-358 (372)
36 cd03802 GT1_AviGT4_like This f 88.1 1.2 2.6E-05 43.0 6.4 70 260-334 235-305 (335)
37 cd04955 GT1_like_6 This family 88.0 1.8 3.8E-05 42.2 7.6 82 260-347 259-342 (363)
38 TIGR03087 stp1 sugar transfera 87.4 2 4.4E-05 43.4 7.8 91 261-357 290-383 (397)
39 cd03813 GT1_like_3 This family 87.4 1.6 3.5E-05 45.7 7.2 86 259-347 361-454 (475)
40 cd03804 GT1_wbaZ_like This fam 87.1 1.3 2.8E-05 43.7 6.0 70 260-333 253-322 (351)
41 cd03799 GT1_amsK_like This is 87.1 1 2.3E-05 43.7 5.3 85 260-347 247-339 (355)
42 cd04949 GT1_gtfA_like This fam 86.2 1.7 3.8E-05 43.0 6.5 87 259-347 269-357 (372)
43 TIGR02472 sucr_P_syn_N sucrose 85.9 1 2.2E-05 46.6 4.7 93 261-357 329-427 (439)
44 TIGR02095 glgA glycogen/starch 85.2 2.2 4.8E-05 44.4 6.9 83 261-346 358-452 (473)
45 PRK14099 glycogen synthase; Pr 84.9 2.7 6E-05 44.3 7.4 93 260-358 360-466 (485)
46 cd03817 GT1_UGDG_like This fam 84.5 2.9 6.3E-05 40.2 7.0 84 260-347 270-355 (374)
47 cd03825 GT1_wcfI_like This fam 84.4 3 6.4E-05 40.6 7.1 84 261-347 257-342 (365)
48 cd03806 GT1_ALG11_like This fa 83.7 4.2 9.1E-05 41.8 8.1 50 259-310 315-364 (419)
49 PRK00654 glgA glycogen synthas 83.2 3.6 7.9E-05 42.9 7.4 82 262-346 350-442 (466)
50 PF00919 UPF0004: Uncharacteri 82.6 2.1 4.5E-05 35.2 4.2 40 62-104 9-48 (98)
51 cd03811 GT1_WabH_like This fam 81.6 7.8 0.00017 36.6 8.6 65 260-327 255-319 (353)
52 PRK14098 glycogen synthase; Pr 81.4 4.7 0.0001 42.6 7.5 91 261-358 374-473 (489)
53 cd03795 GT1_like_4 This family 79.6 3.4 7.4E-05 40.1 5.4 93 260-356 255-352 (357)
54 PHA01630 putative group 1 glyc 78.5 3.9 8.4E-05 40.9 5.5 40 260-300 201-240 (331)
55 PLN02949 transferase, transfer 78.1 4.7 0.0001 42.3 6.2 86 260-348 346-436 (463)
56 cd04946 GT1_AmsK_like This fam 77.4 3.6 7.7E-05 42.1 5.0 91 261-355 301-396 (407)
57 cd03791 GT1_Glycogen_synthase_ 77.0 6.2 0.00014 40.8 6.8 84 261-347 363-457 (476)
58 PLN02939 transferase, transfer 75.4 17 0.00036 41.6 9.8 90 263-358 851-954 (977)
59 PRK09922 UDP-D-galactose:(gluc 73.5 5.9 0.00013 39.4 5.3 72 261-334 250-321 (359)
60 PHA01633 putative glycosyl tra 72.6 4.1 8.9E-05 41.0 3.9 41 260-301 215-255 (335)
61 KOG2619 Fucosyltransferase [Ca 72.5 17 0.00036 37.1 8.2 117 209-340 193-322 (372)
62 cd03812 GT1_CapH_like This fam 71.4 14 0.0003 35.9 7.4 72 259-334 257-328 (358)
63 cd03816 GT1_ALG1_like This fam 70.0 8.6 0.00019 39.4 5.7 85 259-348 305-397 (415)
64 PLN02316 synthase/transferase 66.7 8.2 0.00018 44.5 5.1 66 264-331 915-992 (1036)
65 TIGR01133 murG undecaprenyldip 62.8 14 0.0003 36.1 5.4 82 261-347 243-333 (348)
66 cd03793 GT1_Glycogen_synthase_ 61.0 11 0.00025 40.6 4.6 60 260-320 466-528 (590)
67 PLN02605 monogalactosyldiacylg 60.0 27 0.00058 35.2 7.0 78 260-347 274-360 (382)
68 cd01635 Glycosyltransferase_GT 59.1 28 0.00062 30.7 6.4 41 260-301 173-213 (229)
69 TIGR02468 sucrsPsyn_pln sucros 59.0 23 0.00051 40.9 6.8 92 262-358 561-658 (1050)
70 PRK15490 Vi polysaccharide bio 55.3 26 0.00057 37.8 6.2 65 260-327 464-528 (578)
71 PRK13608 diacylglycerol glucos 54.4 55 0.0012 33.2 8.2 79 260-347 265-350 (391)
72 PRK14332 (dimethylallyl)adenos 54.0 25 0.00053 36.8 5.7 57 30-104 2-59 (449)
73 PLN00142 sucrose synthase 53.1 19 0.00042 40.5 4.9 93 262-358 659-758 (815)
74 PRK05749 3-deoxy-D-manno-octul 52.2 19 0.00041 36.7 4.5 105 261-379 312-422 (425)
75 PRK14862 rimO ribosomal protei 50.6 28 0.00062 36.2 5.5 52 36-104 4-56 (440)
76 KOG1387 Glycosyltransferase [C 48.9 80 0.0017 32.2 7.9 92 252-346 339-436 (465)
77 PRK00726 murG undecaprenyldiph 48.1 42 0.00092 33.1 6.1 83 260-347 244-336 (357)
78 PRK14329 (dimethylallyl)adenos 48.1 34 0.00073 36.0 5.6 58 30-104 14-72 (467)
79 cd04950 GT1_like_1 Glycosyltra 45.3 18 0.0004 36.3 3.0 67 260-333 265-336 (373)
80 cd03788 GT1_TPS Trehalose-6-Ph 44.2 22 0.00047 37.2 3.4 84 259-347 351-440 (460)
81 PF09919 DUF2149: Uncharacteri 42.5 30 0.00066 28.1 3.3 22 1-22 11-32 (92)
82 TIGR02400 trehalose_OtsA alpha 42.0 52 0.0011 34.5 5.8 83 259-347 346-435 (456)
83 TIGR02470 sucr_synth sucrose s 38.9 49 0.0011 37.2 5.3 86 269-358 644-735 (784)
84 PRK14333 (dimethylallyl)adenos 37.2 47 0.001 34.6 4.7 48 40-104 7-55 (448)
85 COG0297 GlgA Glycogen synthase 36.5 38 0.00083 35.9 3.8 39 262-300 362-400 (487)
86 PRK14340 (dimethylallyl)adenos 36.4 61 0.0013 33.9 5.3 48 40-104 7-55 (445)
87 PRK14338 (dimethylallyl)adenos 34.8 69 0.0015 33.6 5.4 48 40-104 21-69 (459)
88 cd03785 GT1_MurG MurG is an N- 33.4 60 0.0013 31.6 4.5 82 260-347 244-336 (350)
89 PRK14326 (dimethylallyl)adenos 32.2 94 0.002 33.0 6.0 53 35-104 9-62 (502)
90 PRK14328 (dimethylallyl)adenos 31.6 67 0.0015 33.4 4.7 39 62-104 11-50 (439)
91 cd02133 PA_C5a_like PA_C5a_lik 30.8 1E+02 0.0022 26.6 5.0 42 261-302 40-81 (143)
92 PRK14335 (dimethylallyl)adenos 30.8 49 0.0011 34.6 3.5 40 62-104 10-49 (455)
93 COG0438 RfaG Glycosyltransfera 30.1 50 0.0011 30.5 3.2 41 260-301 268-308 (381)
94 PF15240 Pro-rich: Proline-ric 29.3 34 0.00074 31.2 1.8 18 2-19 3-20 (179)
95 KOG3185 Translation initiation 29.2 42 0.00091 31.0 2.3 33 267-299 19-51 (245)
96 PRK10125 putative glycosyl tra 28.3 63 0.0014 33.1 3.8 66 261-330 299-364 (405)
97 COG2355 Zn-dependent dipeptida 27.8 32 0.00068 34.3 1.4 70 276-345 145-214 (313)
98 PRK14336 (dimethylallyl)adenos 27.2 62 0.0013 33.5 3.5 40 62-104 11-50 (418)
99 COG0621 MiaB 2-methylthioadeni 26.7 68 0.0015 33.6 3.6 39 62-104 12-52 (437)
100 PRK14325 (dimethylallyl)adenos 26.7 93 0.002 32.3 4.7 48 41-104 5-52 (444)
101 TIGR03590 PseG pseudaminic aci 25.5 1E+02 0.0023 29.7 4.6 34 260-299 233-266 (279)
102 PRK14334 (dimethylallyl)adenos 24.1 78 0.0017 32.9 3.6 39 62-104 10-49 (440)
103 PLN03063 alpha,alpha-trehalose 23.5 1.9E+02 0.0041 32.7 6.7 67 260-331 367-437 (797)
104 TIGR00089 RNA modification enz 23.5 1.1E+02 0.0024 31.5 4.6 34 62-96 9-43 (429)
105 PRK15179 Vi polysaccharide bio 22.3 1.2E+02 0.0027 33.6 4.8 61 260-323 583-643 (694)
106 PLN02275 transferase, transfer 22.0 95 0.0021 31.1 3.7 41 259-300 297-340 (371)
107 PF07038 DUF1324: Protein of u 21.5 57 0.0012 23.1 1.3 39 267-308 7-46 (59)
108 PRK14331 (dimethylallyl)adenos 21.3 95 0.0021 32.2 3.6 39 62-104 10-49 (437)
109 cd03796 GT1_PIG-A_like This fa 20.8 90 0.0019 31.4 3.2 41 260-301 261-301 (398)
No 1
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=100.00 E-value=2.7e-58 Score=449.68 Aligned_cols=285 Identities=39% Similarity=0.731 Sum_probs=225.5
Q ss_pred CCCceEEEEcCCCcCCccccc-----cCCccccCchhhHHHHHHHHccCCccCCCcCCCcEEEeecCCcccc-CCCCCCC
Q 038885 37 VGKLKVYVYELPSKYNKKLLL-----KDPRCLTHMFAAEIFMHRFLLSSPVRTLNPEEADWFYTPIYPTCDL-TPTGLPL 110 (406)
Q Consensus 37 ~~~~kIYVYdlP~~fn~~~l~-----~~~~~~~~~y~~E~~~~~~L~~S~~rT~dPeeAdlFyVP~~~~~~~-~~~~~~~ 110 (406)
+.++||||||+|++||++++. ....|.+++|++|.+|+++|++|+++|.||+|||+||||++.+|.. ..++.+.
T Consensus 2 ~~~lkVYVY~lp~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~l~~s~~~T~dp~eAdlF~vP~~~~~~~~~~~~~~~ 81 (302)
T PF03016_consen 2 HRGLKVYVYPLPPKFNKDLLDPREDEQCSWYETSQYALEVILHEALLNSPFRTDDPEEADLFFVPFYSSCYFHHWWGSPN 81 (302)
T ss_pred CCCCEEEEEeCCccccccceeccccccCCCcccccchHHHHHHHHHHhCCcEeCCHHHCeEEEEEcccccccccccCCcc
Confidence 568999999999999988872 3456788999999999999999999999999999999999998873 1122222
Q ss_pred CCChhHHHHHHHHHHHhcCcccccCCCcceEEeecCCCCcccchhhHHHHhhCchhHhhccceee-ecCCCCccc-cCCC
Q 038885 111 PFKSPRMMRSAIQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILPLLQRATLVQ-TFGQRNHVC-LNEG 188 (406)
Q Consensus 111 ~~~~~~~~~~~~~~l~~~~PyWnR~~G~DH~~v~~~D~G~~~~~~~~~a~~~~~~~~~~n~~~l~-~~g~~~~~~-~~~~ 188 (406)
.........+++..+.+++|||||++|+||||++++|+|.|...... .+..+.+... ..+.....| .+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~p~w~r~~G~dH~~~~~~~~g~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (302)
T PF03016_consen 82 SGADRDSLSDALRHLLASYPYWNRSGGRDHFFVNSHDRGGCSFDRNP--------RLMNNSIRAVVAFSSFSSSCFRPGF 153 (302)
T ss_pred chhhHHHHHHHHHHHHhcCchhhccCCCCeEEEeccccccccccccH--------hhhccchhheeccCCCCcCcccCCC
Confidence 22334556677777778999999999999999999999987643221 1222222222 222222333 4667
Q ss_pred ceecCCCCCCCccccCC---CCCCCCCceeeeecccccccCCCCCCCccchhhHHHHHHHhcCCCceEee-----cCCcc
Q 038885 189 SITIPPYAPPQKMQAHQ---IPPDTPRSIFVYFRGLFYDVNNDPEGGYYARGARAAVWENFKNNPLFDIS-----TDHPT 260 (406)
Q Consensus 189 DI~iPp~~~p~~~~~~~---~~~~~~R~~l~~F~G~~~~~~~~~~~~~ys~~iR~~l~~~~~~~~~~~~~-----~~~~~ 260 (406)
||++|++.++.....+. .....+|++|++|+|.......+ ++.++|+.|++.|++.+++.+. +..+.
T Consensus 154 Di~~P~~~~~~~~~~~~~~~~~~~~~R~~l~~f~g~~~~~~~~-----~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~ 228 (302)
T PF03016_consen 154 DIVIPPFVPPSSLPDWRPWPQRPPARRPYLLFFAGTIRPSSND-----YSGGVRQRLLDECKSDPDFRCSDGSETCPSPS 228 (302)
T ss_pred CeeccccccccccCCccccccCCccCCceEEEEeeeccccccc-----cchhhhhHHHHhcccCCcceeeecccccccch
Confidence 99999987655433222 23567899999999997653221 4568999999999988876643 23456
Q ss_pred cHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhCC
Q 038885 261 TYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSI 334 (406)
Q Consensus 261 ~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i 334 (406)
+|.+.|++|+|||||+|+++++.||+|||++|||||||+|.+.|||+++|||++|||+|+++++++|+++|++|
T Consensus 229 ~~~~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv~v~~~~~~~l~~iL~~i 302 (302)
T PF03016_consen 229 EYMELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSVRVPEADLPELPEILRSI 302 (302)
T ss_pred HHHHhcccCeEEEECCCCCcccchHHHHhhhceeeEEecCcccCCcccccCHHHEEEEECHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=100.00 E-value=4.6e-54 Score=444.41 Aligned_cols=324 Identities=38% Similarity=0.608 Sum_probs=253.3
Q ss_pred CCCceEEEEcCCCcCCccccccCCccccCchhhHHHHHHHH--ccCCccCCCcCCCcEEEeecCCccccCCC-CCCC---
Q 038885 37 VGKLKVYVYELPSKYNKKLLLKDPRCLTHMFAAEIFMHRFL--LSSPVRTLNPEEADWFYTPIYPTCDLTPT-GLPL--- 110 (406)
Q Consensus 37 ~~~~kIYVYdlP~~fn~~~l~~~~~~~~~~y~~E~~~~~~L--~~S~~rT~dPeeAdlFyVP~~~~~~~~~~-~~~~--- 110 (406)
.+.+|||+|.++ +..++...++|.++||+.|.+||+++ ..++|||.||+|||+||||||.+++.... ..+.
T Consensus 112 ~~~~~~~~~~~~---~~~~~~~~~w~~~~~~~~E~~~~~~~~~~~~~~Rt~dp~~Ad~f~vPf~~~~~~~~~~~~~~~~~ 188 (464)
T KOG1021|consen 112 EKRGKVYVYHEG---NKPLFHTPSWCLTDQYASEGIFHNRMLRRESAFRTLDPLEADAFYVPFYASLDYNRALLWPDERV 188 (464)
T ss_pred cccCceEEecCC---CCccccCCCcccccchhHHHHHHHHHhcccCceecCChhhCcEEEEcceeeEehhhhcccCCccc
Confidence 567999999987 33344445679999999999999999 58899999999999999999999987443 3331
Q ss_pred CCChhHHHHHHHHHHHhcCcccccCCCcceEEeecCCCCcccchhhHHHHhhCchhHhhc-cceeeecCCCCccccCCCc
Q 038885 111 PFKSPRMMRSAIQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILPLLQR-ATLVQTFGQRNHVCLNEGS 189 (406)
Q Consensus 111 ~~~~~~~~~~~~~~l~~~~PyWnR~~G~DH~~v~~~D~G~~~~~~~~~a~~~~~~~~~~n-~~~l~~~g~~~~~~~~~~D 189 (406)
.......+.+++..+.+++|||||++|+|||||++|+++.+.......+... ....+.| +.....++. ..+|
T Consensus 189 ~~~~~~~~~~~i~~~~~~~p~W~Rs~G~DH~~v~~~~~~~~~~~~~~~~~~~-~i~~~~n~a~ls~~~~~------~~~d 261 (464)
T KOG1021|consen 189 NAILRSILQDYIVALLSKQPYWNRSSGRDHFFVACHDWGDFRRRSDWGASIS-LIPEFCNGALLSLEFFP------WNKD 261 (464)
T ss_pred chHHHHHHHHHHHHHHhcCchhhccCCCceEEEeCCcchheeeccchhhHHH-HHHhhCCcceeeccccc------CCCc
Confidence 1223455666666667899999999999999999999998654311111111 1223344 222222322 1268
Q ss_pred eecCCCC--CCCccc--cCCC-CCCCCCceeeeecccccccCCCCCCCccchhhHHHHHHHhcCCCc----eEe-----e
Q 038885 190 ITIPPYA--PPQKMQ--AHQI-PPDTPRSIFVYFRGLFYDVNNDPEGGYYARGARAAVWENFKNNPL----FDI-----S 255 (406)
Q Consensus 190 I~iPp~~--~p~~~~--~~~~-~~~~~R~~l~~F~G~~~~~~~~~~~~~ys~~iR~~l~~~~~~~~~----~~~-----~ 255 (406)
++||.+. ++.... .++. ....+|++|+||+|... .+.+|+.|+++|+++++ ..| +
T Consensus 262 v~iP~~~~~~~~~~~~~~~~~~~~~~~R~~L~~F~G~~~-----------~~~iR~~L~~~~~~~~~~~~~~~~~~g~~~ 330 (464)
T KOG1021|consen 262 VAIPYPTIPHPLSPPENSWQGGVPFSNRPILAFFAGAPA-----------GGQIRSILLDLWKKDPDTEVFVNCPRGKVS 330 (464)
T ss_pred ccCCCccCcCccCccccccccCCCCCCCceEEEEecccc-----------CCcHHHHHHHHhhcCcCccccccCCCCccc
Confidence 9998754 333222 2232 45579999999999841 13699999999988321 222 2
Q ss_pred cCCcccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcH-HHHHhCC
Q 038885 256 TDHPTTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKL-DTILTSI 334 (406)
Q Consensus 256 ~~~~~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l-~~~L~~i 334 (406)
|..+..|.+.|++|+|||||+|+++++.|+||||.+|||||||+|.+.+||++++||++|||+|++++++++ .++|.+|
T Consensus 331 ~~~~~~y~~~m~~S~FCL~p~Gd~~ts~R~fdai~~gCvPViisd~~~lpf~~~~d~~~fSV~v~~~~v~~~~~~iL~~i 410 (464)
T KOG1021|consen 331 CDRPLNYMEGMQDSKFCLCPPGDTPTSPRLFDAIVSGCVPVIISDGIQLPFGDVLDWTEFSVFVPEKDVPELIKNILLSI 410 (464)
T ss_pred cCCcchHHHHhhcCeEEECCCCCCcccHhHHHHHHhCCccEEEcCCcccCcCCCccceEEEEEEEHHHhhhHHHHHHHhc
Confidence 345688999999999999999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred CHHHHHHHHHHhcccccccceeecC--CCCcccHHHHHHHHHHhHCCCCc
Q 038885 335 PPEVILRKQRLLANPSMKRAMLFPQ--PAQPGDAFHQILNGLARKLPHDK 382 (406)
Q Consensus 335 ~~~~~~~mq~~l~~~~~~~~f~y~~--~~~~~DAf~~il~~L~~r~~~~~ 382 (406)
+.+++.+||+++.+ .+.+||+++. +.+.+|||+++++++++|+.+.+
T Consensus 411 ~~~~~~~m~~~v~~-~v~r~~~~~~~~~~~~~da~~~~~~~v~~r~~~~~ 459 (464)
T KOG1021|consen 411 PEEEVLRMRENVIR-LVPRHFLKKPPGPPKRGDAFHMILHSLWRRLHKLR 459 (464)
T ss_pred CHHHHHHHHHHHHH-HHHhhEEeCCCCCCCcchhHHHHHhhhhhcccccc
Confidence 99999999999986 5899999998 77889999999999999988766
No 3
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=99.95 E-value=1.2e-27 Score=240.46 Aligned_cols=300 Identities=15% Similarity=0.227 Sum_probs=201.7
Q ss_pred CCCceEEEEcCCCcCCccccccCCccccCchhhH----HHHHHHHccCCccCCCcCCCcEEEeecCCccccCCCCCCCCC
Q 038885 37 VGKLKVYVYELPSKYNKKLLLKDPRCLTHMFAAE----IFMHRFLLSSPVRTLNPEEADWFYTPIYPTCDLTPTGLPLPF 112 (406)
Q Consensus 37 ~~~~kIYVYdlP~~fn~~~l~~~~~~~~~~y~~E----~~~~~~L~~S~~rT~dPeeAdlFyVP~~~~~~~~~~~~~~~~ 112 (406)
..+|.||||| |..+..+ ++.+ ..|.+.+....|.|.||+.||++++-+..- . .+...
T Consensus 193 tSgfPVYvyd-~D~~~~G------------~~~d~~lk~~fq~t~~~n~~~ve~pd~ACiyi~lvge~---q---~P~~l 253 (907)
T KOG2264|consen 193 TSGFPVYVYD-SDIITSG------------QSEDEWLKQVFQETIPNNVYLVETPDKACIYIHLVGEI---Q---SPVVL 253 (907)
T ss_pred cCCceeEEec-cceeecc------------cchHHHHHHHHHHhcccceeEeeCCCccEEEEEEeccc---c---CCCcC
Confidence 3479999999 5444422 2222 246667778889999999999998865421 1 11111
Q ss_pred ChhHHHHHHHHHHHhcCcccccCCCcceEEeecCCCCcccchhhHHHHhhCchhHhhccceeeecCCCCccccCCCceec
Q 038885 113 KSPRMMRSAIQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILPLLQRATLVQTFGQRNHVCLNEGSITI 192 (406)
Q Consensus 113 ~~~~~~~~~~~~l~~~~PyWnR~~G~DH~~v~~~D~G~~~~~~~~~a~~~~~~~~~~n~~~l~~~g~~~~~~~~~~DI~i 192 (406)
.. .+ ++.| -++|||. ++|+||++++.+...-..+.. -...+|....++.++.-..+ +++.|+++
T Consensus 254 ~p----~e-lekl-yslp~w~-~dg~Nhvl~Nl~r~s~~~n~l--yn~~t~raivvQssf~~~q~-------RpgfDl~V 317 (907)
T KOG2264|consen 254 TP----AE-LEKL-YSLPHWR-TDGFNHVLFNLGRPSDTQNLL--YNFQTGRAIVVQSSFYTVQI-------RPGFDLPV 317 (907)
T ss_pred Ch----Hh-hhhh-hcCcccc-CCCcceEEEEccCccccccce--eEeccCceEEEeecceeeee-------ccCCCccc
Confidence 11 22 2334 4789997 899999999863221000000 01122222233333322223 35679999
Q ss_pred CCCCCCCccccCCC---CCCCCCceeeeecccccccCCCCCCCccchhhHHHHHHHhcC--------CC--ceEee----
Q 038885 193 PPYAPPQKMQAHQI---PPDTPRSIFVYFRGLFYDVNNDPEGGYYARGARAAVWENFKN--------NP--LFDIS---- 255 (406)
Q Consensus 193 Pp~~~p~~~~~~~~---~~~~~R~~l~~F~G~~~~~~~~~~~~~ys~~iR~~l~~~~~~--------~~--~~~~~---- 255 (406)
+|..|+.....+.. ..+.+|++|+.|+|.+.+.... ....++-..++..+ .+ .+.|+
T Consensus 318 ~pv~h~~~e~~~~e~~p~vP~~RkyL~t~qgki~~~~ss------Ln~~~aF~~e~~adp~~~a~qds~i~qv~c~~t~k 391 (907)
T KOG2264|consen 318 DPVNHIAVEKNFVELTPLVPFQRKYLITLQGKIESDNSS------LNEFSAFSEELSADPSRRAVQDSPIVQVKCSFTCK 391 (907)
T ss_pred CcccccccCccceecCcccchhhheeEEEEeeecccccc------cchhhhhHHHhccCCcccccccCceEEEEEeeccc
Confidence 99998766554433 4567999999999988653221 01223222222211 11 12332
Q ss_pred ------------cCCcccHHHhhhccceEEe-cCCCCC-----CchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEE
Q 038885 256 ------------TDHPTTYYEDMQRAIFCLC-PLGWAP-----WSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGM 317 (406)
Q Consensus 256 ------------~~~~~~y~~~l~~S~FCL~-p~G~~~-----~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv 317 (406)
|+..+.-.+.++.|+|||+ |+|+.- .-.|++||++.||||||+++...|||++.|||++.++
T Consensus 392 ~Qe~~SLpewalcg~~~~RrqLlk~STF~lilpp~d~rv~S~~~~~r~~eaL~~GavPviLg~~~~LPyqd~idWrraal 471 (907)
T KOG2264|consen 392 NQENCSLPEWALCGERERRRQLLKSSTFCLILPPGDPRVISEMFFQRFLEALQLGAVPVILGNSQLLPYQDLIDWRRAAL 471 (907)
T ss_pred cCCCCCcchhhhccchHHHHHHhccceeEEEecCCCcchhhHHHHHHHHHHHhcCCeeEEeccccccchHHHHHHHHHhh
Confidence 2223467799999999996 778753 3579999999999999999999999999999999999
Q ss_pred EecCCChhcHHHHHhCCCHHHHHHHHHHhcccccccceeecCCCC-cccHHHHHHHHHHhHCCCCccc
Q 038885 318 FVAEEDVPKLDTILTSIPPEVILRKQRLLANPSMKRAMLFPQPAQ-PGDAFHQILNGLARKLPHDKST 384 (406)
Q Consensus 318 ~v~~~~~~~l~~~L~~i~~~~~~~mq~~l~~~~~~~~f~y~~~~~-~~DAf~~il~~L~~r~~~~~~~ 384 (406)
++|..++.+++.+|+++.+.++.+|||+.. ++|...-+ ..-.+++++..|+-|+..+.+-
T Consensus 472 ~lPkaR~tE~HFllrs~~dsDll~mRRqGR-------l~wEtYls~~~~~~~tvlA~lR~rlqIP~rp 532 (907)
T KOG2264|consen 472 RLPKARLTEAHFLLRSFEDSDLLEMRRQGR-------LFWETYLSDRHLLARTVLAALRYRLQIPTRP 532 (907)
T ss_pred hCCccccchHHHHHHhcchhhHHHHHhhhh-------hhHHHHhhHHHHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999999999999999999865 56655533 3557899999999999887743
No 4
>KOG1022 consensus Acetylglucosaminyltransferase EXT2/exostosin 2 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.82 E-value=1.6e-19 Score=181.78 Aligned_cols=303 Identities=19% Similarity=0.175 Sum_probs=198.5
Q ss_pred CceEEEEcCCCcCCccccccCCccccCchhhHHH-HHHHHccCCccCCCcCCCcEEEeecCCccccCCCCCCCCCChhHH
Q 038885 39 KLKVYVYELPSKYNKKLLLKDPRCLTHMFAAEIF-MHRFLLSSPVRTLNPEEADWFYTPIYPTCDLTPTGLPLPFKSPRM 117 (406)
Q Consensus 39 ~~kIYVYdlP~~fn~~~l~~~~~~~~~~y~~E~~-~~~~L~~S~~rT~dPeeAdlFyVP~~~~~~~~~~~~~~~~~~~~~ 117 (406)
..|||+|.+. ++++..+.-....++.|++ +.++...|-++|.|+++||+| +|...-++ ++-..
T Consensus 98 ~~KvyIy~l~-----~~vd~~s~~~~~T~s~ey~~lleA~~~S~yyt~n~N~aclf-~Ps~d~ln--Qn~l~-------- 161 (691)
T KOG1022|consen 98 ETKVYIYMLG-----DIVDAKSIDKGATWSPEYIALLEAWHLSFYYTFNYNGACLF-MPSSDELN--QNPLS-------- 161 (691)
T ss_pred ccceeEEehh-----hhhhhhcccccccccHHHHHHHHHHHhccceecCCCceEEE-ecchhhhc--cCcch--------
Confidence 5799999973 4444333323456788865 888999999999999999999 69776543 33211
Q ss_pred HHHHHHHHHhcCcccccCCCcceEEeecCCCCc--ccchhhHHHHhhCchhHhhccceeeecCCCCccccCCCceecCCC
Q 038885 118 MRSAIQLISSNWPYWNRTEGADHFFVVPHDFGA--CFHYQEEKAIERGILPLLQRATLVQTFGQRNHVCLNEGSITIPPY 195 (406)
Q Consensus 118 ~~~~~~~l~~~~PyWnR~~G~DH~~v~~~D~G~--~~~~~~~~a~~~~~~~~~~n~~~l~~~g~~~~~~~~~~DI~iPp~ 195 (406)
..+...+.+++-.|.| |.||..+..=. |. .+++- .+-+ +--.+...-|-+.|.++++.||.||.+
T Consensus 162 -~kl~~~ala~l~~wdr--g~nH~~fnmLp-Gg~p~ynta----ldv~-----~d~a~~~gggf~tW~yr~g~dv~ipv~ 228 (691)
T KOG1022|consen 162 -WKLEKVALAKLLVWDR--GVNHEGFNMLP-GGDPTYNTA----LDVG-----QDEAWYSGGGFGTWKYRKGNDVYIPVR 228 (691)
T ss_pred -HHHHHHHHhcccchhc--ccceeeEeecc-CCCCCcccc----ccCC-----cceeEEecCCcCcccccCCCccccccc
Confidence 1223334466779999 99999986311 21 11111 1111 111222222333566778889999987
Q ss_pred CCCCccccCCCCCCCCCceeeeecccccccCCCCCCCccchhhHHHHHHHhcCCCc--eE---e---------ecCC--c
Q 038885 196 APPQKMQAHQIPPDTPRSIFVYFRGLFYDVNNDPEGGYYARGARAAVWENFKNNPL--FD---I---------STDH--P 259 (406)
Q Consensus 196 ~~p~~~~~~~~~~~~~R~~l~~F~G~~~~~~~~~~~~~ys~~iR~~l~~~~~~~~~--~~---~---------~~~~--~ 259 (406)
.+....... .-..+|..++.-.|. -|...+|..+.+....... +. | .+.+ .
T Consensus 229 Sp~~v~~~~--~~~g~r~~~l~~~q~-----------n~~pr~r~~l~el~~kh~e~~l~l~~c~nlsl~~r~~~qhH~~ 295 (691)
T KOG1022|consen 229 SPGNVGRAF--LYDGSRYRVLQDCQE-----------NYGPRIRVSLIELLSKHEERELELPFCLNLSLNSRGVRQHHFD 295 (691)
T ss_pred cccccCccc--cCCccceeeeecccc-----------ccchHhHHhHHHHHhhccceEEecchhccccccccchhhcccc
Confidence 643211111 122345444333321 1445677777665543221 11 0 1112 2
Q ss_pred ccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhCCCHHHH
Q 038885 260 TTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSIPPEVI 339 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i~~~~~ 339 (406)
-+|...+...+||+.-+|.+....-+.+-+.+||+|||..|.+.+||.+++||...||+++|..+..+...|++++...+
T Consensus 296 ~~yp~~l~~~~fc~~~R~~r~gq~~lv~~~~a~c~pvi~vd~y~lpf~~Vvdw~~aSv~~~e~~~~~v~~~l~~i~~~~i 375 (691)
T KOG1022|consen 296 VKYPSSLEFIGFCDGDRVTRGGQFHLVILGYASCAPVISVDIYLLPFLGVVDWIVASVWCMEYYAGKVMDALLNIETAGI 375 (691)
T ss_pred cccccccceeeeEeccccccCCccceehhhhcccceeeeeehhhhhhhhhhhceeeeEEeehhhHHHHHHHhhcchhcch
Confidence 56999999999999999988888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccccceeecCCCCcccHHHHHHHHHH-hHCCCCccccccCCCcccccc
Q 038885 340 LRKQRLLANPSMKRAMLFPQPAQPGDAFHQILNGLA-RKLPHDKSTYLKPGGKFLNWT 396 (406)
Q Consensus 340 ~~mq~~l~~~~~~~~f~y~~~~~~~DAf~~il~~L~-~r~~~~~~~~~~~~~~~~~w~ 396 (406)
-+||.+..-.+ ...|. ...-.+...+..+. +.++....+ ++.||
T Consensus 376 ~sl~~r~~~~r-l~rf~-----~~~~~~l~~~~~i~~~llp~v~~s-------~~~w~ 420 (691)
T KOG1022|consen 376 CSLQLRRIGSR-LNRFP-----PFKRGFLLLLSSIGKRLLPVVAIS-------SRLWN 420 (691)
T ss_pred hhhhhhhhhhh-Hhhcc-----hHHHHHHHHHHHHhhhhhheeeec-------ccccc
Confidence 99886543211 11111 11234455555554 667877777 88899
No 5
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=95.59 E-value=0.02 Score=54.73 Aligned_cols=86 Identities=20% Similarity=0.204 Sum_probs=62.9
Q ss_pred cccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhCC--CH
Q 038885 259 PTTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSI--PP 336 (406)
Q Consensus 259 ~~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~ 336 (406)
..++.+.|.+|.+.++|.-.+..+..++||+.+|| |||..+. -.+.+.+.-....+.++..+..++.+.|..+ .+
T Consensus 266 ~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~-pvI~~~~--~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~ 342 (374)
T cd03801 266 DEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGL-PVVASDV--GGIPEVVEDGETGLLVPPGDPEALAEAILRLLDDP 342 (374)
T ss_pred hhhHHHHHHhcCEEEecchhccccchHHHHHHcCC-cEEEeCC--CChhHHhcCCcceEEeCCCCHHHHHHHHHHHHcCh
Confidence 36788999999999999877778889999999998 5666664 2345555546677788888777777776653 34
Q ss_pred HHHHHHHHHhc
Q 038885 337 EVILRKQRLLA 347 (406)
Q Consensus 337 ~~~~~mq~~l~ 347 (406)
+...+|.++..
T Consensus 343 ~~~~~~~~~~~ 353 (374)
T cd03801 343 ELRRRLGEAAR 353 (374)
T ss_pred HHHHHHHHHHH
Confidence 55566666544
No 6
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=95.50 E-value=0.014 Score=51.47 Aligned_cols=84 Identities=19% Similarity=0.214 Sum_probs=54.4
Q ss_pred ccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhCCCH--H
Q 038885 260 TTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSIPP--E 337 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i~~--~ 337 (406)
.++.+.++.|.+.++|....+.+..+.|||.+|| |||+++.- .+.+++.=..-.+.++..++.++.+.+..+-. +
T Consensus 84 ~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~-pvI~~~~~--~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~~ 160 (172)
T PF00534_consen 84 DELDELYKSSDIFVSPSRNEGFGLSLLEAMACGC-PVIASDIG--GNNEIINDGVNGFLFDPNDIEELADAIEKLLNDPE 160 (172)
T ss_dssp HHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT--EEEEESST--HHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHHH
T ss_pred cccccccccceecccccccccccccccccccccc-ceeecccc--CCceeeccccceEEeCCCCHHHHHHHHHHHHCCHH
Confidence 5678899999999999998999999999999999 56666631 12222211123466777788877777766543 3
Q ss_pred HHHHHHHHh
Q 038885 338 VILRKQRLL 346 (406)
Q Consensus 338 ~~~~mq~~l 346 (406)
...+|.++-
T Consensus 161 ~~~~l~~~~ 169 (172)
T PF00534_consen 161 LRQKLGKNA 169 (172)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 455555543
No 7
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=95.37 E-value=0.057 Score=51.43 Aligned_cols=86 Identities=21% Similarity=0.177 Sum_probs=60.1
Q ss_pred ccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhCC--CHH
Q 038885 260 TTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSI--PPE 337 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~~ 337 (406)
.+..+.|+++.+++.|...++.+..++|||.+||.+| .++....+ ++.++-....+.++..++.++.+.+..+ .++
T Consensus 244 ~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi-~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~~~ 321 (348)
T cd03820 244 KNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPVI-SFDCPTGP-SEIIEDGVNGLLVPNGDVEALAEALLRLMEDEE 321 (348)
T ss_pred chHHHHHHhCCEEEeCccccccCHHHHHHHHcCCCEE-EecCCCch-HhhhccCcceEEeCCCCHHHHHHHHHHHHcCHH
Confidence 5678899999999999877778889999999999754 45432222 2233333466777887777777666655 466
Q ss_pred HHHHHHHHhc
Q 038885 338 VILRKQRLLA 347 (406)
Q Consensus 338 ~~~~mq~~l~ 347 (406)
...+|.++..
T Consensus 322 ~~~~~~~~~~ 331 (348)
T cd03820 322 LRKRMGANAR 331 (348)
T ss_pred HHHHHHHHHH
Confidence 6667776643
No 8
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=95.26 E-value=0.036 Score=55.98 Aligned_cols=92 Identities=13% Similarity=0.103 Sum_probs=61.7
Q ss_pred hHHHHHHHhcCCCceEee--cC-----CcccHHHhhhccceEEecCC---CCCCchhHHHHHHhCceeEEEe--cc-c--
Q 038885 238 ARAAVWENFKNNPLFDIS--TD-----HPTTYYEDMQRAIFCLCPLG---WAPWSPRLVEAVVFGCIPVIIA--DD-I-- 302 (406)
Q Consensus 238 iR~~l~~~~~~~~~~~~~--~~-----~~~~y~~~l~~S~FCL~p~G---~~~~s~rl~dal~~GCIPVii~--d~-~-- 302 (406)
.|..+++.+.+.-.+++. |. ......+.+++-+|.|+..- .+-.+-.||+|+.+|||||+++ .. +
T Consensus 190 ~R~~~~~~L~~~~~vd~yG~c~~~~~~~~~~~~~~~~~ykF~lafENs~c~dYiTEK~~~al~~g~VPI~~G~~~~~~~~ 269 (349)
T PF00852_consen 190 GREEYVRELSKYIPVDSYGKCGNNNPCPRDCKLELLSKYKFYLAFENSNCPDYITEKFWNALLAGTVPIYWGPPRPNYEE 269 (349)
T ss_dssp HHHHHHHHHHTTS-EEE-SSTT--SSS--S-HHHHHHTEEEEEEE-SS--TT---HHHHHHHHTTSEEEEES---TTHHH
T ss_pred cHHHHHHHHHhhcCeEccCCCCCCCCcccccccccccCcEEEEEecCCCCCCCCCHHHHHHHHCCeEEEEECCEeccccc
Confidence 488888888776555442 31 12457899999999998732 2345888999999999999999 32 2
Q ss_pred cCCCCCCCCCCceEEEecCCChhcHHHHHhCCC
Q 038885 303 VLPFADAIPWEEIGMFVAEEDVPKLDTILTSIP 335 (406)
Q Consensus 303 ~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i~ 335 (406)
.+|=...|+.++|. ...+|.+.|+.+.
T Consensus 270 ~~P~~SfI~~~df~------s~~~La~yl~~l~ 296 (349)
T PF00852_consen 270 FAPPNSFIHVDDFK------SPKELADYLKYLD 296 (349)
T ss_dssp HS-GGGSEEGGGSS------SHHHHHHHHHHHH
T ss_pred CCCCCCccchhcCC------CHHHHHHHHHHHh
Confidence 36657777777664 5677888888774
No 9
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=95.18 E-value=0.067 Score=52.32 Aligned_cols=95 Identities=18% Similarity=0.149 Sum_probs=65.9
Q ss_pred cccHHHhhhccceEEecC-CCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHh-C--C
Q 038885 259 PTTYYEDMQRAIFCLCPL-GWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILT-S--I 334 (406)
Q Consensus 259 ~~~y~~~l~~S~FCL~p~-G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~-~--i 334 (406)
..+..+.|+.|..+++|. -.+..+.-++|||++|| |||..+. -+..+.+.-..-.+.++..+...+.+.|. . .
T Consensus 254 ~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~-PvI~~~~--~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~~ 330 (355)
T cd03819 254 CSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGR-PVIASDH--GGARETVRPGETGLLVPPGDAEALAQALDQILSL 330 (355)
T ss_pred cccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCC-CEEEcCC--CCcHHHHhCCCceEEeCCCCHHHHHHHHHHHHhh
Confidence 457889999999999997 45567788999999999 7777763 23445554444566778888888777763 2 3
Q ss_pred CHHHHHHHHHHhcccccccceee
Q 038885 335 PPEVILRKQRLLANPSMKRAMLF 357 (406)
Q Consensus 335 ~~~~~~~mq~~l~~~~~~~~f~y 357 (406)
++++..+|+++-.+ .+..+|.|
T Consensus 331 ~~~~~~~~~~~a~~-~~~~~f~~ 352 (355)
T cd03819 331 LPEGRAKMFAKARM-CVETLFSY 352 (355)
T ss_pred CHHHHHHHHHHHHH-HHHHhhhh
Confidence 57777777776543 23444443
No 10
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=95.04 E-value=0.055 Score=52.44 Aligned_cols=85 Identities=21% Similarity=0.215 Sum_probs=60.4
Q ss_pred ccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhCC--CHH
Q 038885 260 TTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSI--PPE 337 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~~ 337 (406)
.+..+.|..|..++.|.+....+..++|||.+|| |||.++.-. ..+.+.=....+.++..+..++.+.|..+ .++
T Consensus 258 ~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~-PvI~~~~~~--~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~ 334 (364)
T cd03814 258 EELAAAYASADVFVFPSRTETFGLVVLEAMASGL-PVVAPDAGG--PADIVTDGENGLLVEPGDAEAFAAALAALLADPE 334 (364)
T ss_pred HHHHHHHHhCCEEEECcccccCCcHHHHHHHcCC-CEEEcCCCC--chhhhcCCcceEEcCCCCHHHHHHHHHHHHcCHH
Confidence 4577899999999999988888899999999999 777776432 23333323556677777776555555543 466
Q ss_pred HHHHHHHHhc
Q 038885 338 VILRKQRLLA 347 (406)
Q Consensus 338 ~~~~mq~~l~ 347 (406)
...+|+++..
T Consensus 335 ~~~~~~~~~~ 344 (364)
T cd03814 335 LRRRMAARAR 344 (364)
T ss_pred HHHHHHHHHH
Confidence 6777777655
No 11
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=94.74 E-value=0.05 Score=52.89 Aligned_cols=84 Identities=21% Similarity=0.182 Sum_probs=60.2
Q ss_pred ccHHHhhhccceEEecCCCC--CCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhCC--C
Q 038885 260 TTYYEDMQRAIFCLCPLGWA--PWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSI--P 335 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~--~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~ 335 (406)
.+..+.|+.+.+++.|...+ ..+..+.|||++|+ |||.++.-. .+.+.+ ..-.+.++..+..++.+.|..+ .
T Consensus 259 ~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~-PvI~~~~~~--~~~i~~-~~~g~~~~~~d~~~~~~~l~~l~~~ 334 (366)
T cd03822 259 EELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGK-PVISTPVGH--AEEVLD-GGTGLLVPPGDPAALAEAIRRLLAD 334 (366)
T ss_pred HHHHHHHhhcCEEEecccccccccchHHHHHHHcCC-CEEecCCCC--hheeee-CCCcEEEcCCCHHHHHHHHHHHHcC
Confidence 46788999999999998877 78889999999999 999887432 233333 3345667777777766666543 2
Q ss_pred HHHHHHHHHHhc
Q 038885 336 PEVILRKQRLLA 347 (406)
Q Consensus 336 ~~~~~~mq~~l~ 347 (406)
++...+|+++..
T Consensus 335 ~~~~~~~~~~~~ 346 (366)
T cd03822 335 PELAQALRARAR 346 (366)
T ss_pred hHHHHHHHHHHH
Confidence 456677777655
No 12
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=94.71 E-value=0.046 Score=52.96 Aligned_cols=85 Identities=21% Similarity=0.176 Sum_probs=58.5
Q ss_pred ccHHHhhhccceEEecCCCCCC-----chhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhCC
Q 038885 260 TTYYEDMQRAIFCLCPLGWAPW-----SPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSI 334 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~~~-----s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i 334 (406)
.++.+.|..+.++++|...+.. ...++||+.+|| |||.++.-..+ +.+.=....+.++..+..++.+.|..+
T Consensus 286 ~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~-pvi~~~~~~~~--~~~~~~~~g~~~~~~~~~~l~~~i~~~ 362 (394)
T cd03794 286 EELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGK-PVLASVDGESA--ELVEEAGAGLVVPPGDPEALAAAILEL 362 (394)
T ss_pred HHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCC-cEEEecCCCch--hhhccCCcceEeCCCCHHHHHHHHHHH
Confidence 5678899999999999776543 556899999997 78877653222 222112556677777777777777655
Q ss_pred --CHHHHHHHHHHhc
Q 038885 335 --PPEVILRKQRLLA 347 (406)
Q Consensus 335 --~~~~~~~mq~~l~ 347 (406)
++++..+|.++..
T Consensus 363 ~~~~~~~~~~~~~~~ 377 (394)
T cd03794 363 LDDPEERAEMGENGR 377 (394)
T ss_pred HhChHHHHHHHHHHH
Confidence 5666777776554
No 13
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=94.15 E-value=0.18 Score=50.99 Aligned_cols=115 Identities=19% Similarity=0.137 Sum_probs=70.9
Q ss_pred hHHHHHHHhcC---CCceEeecCC-cccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCC
Q 038885 238 ARAAVWENFKN---NPLFDISTDH-PTTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWE 313 (406)
Q Consensus 238 iR~~l~~~~~~---~~~~~~~~~~-~~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~ 313 (406)
.++.+.+.+.. ...+.+.... ..++.+.|+.|..++.|.-....+..++|||++|| |||.++.- +..+++.=.
T Consensus 266 ~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~-PVIas~~~--g~~e~i~~~ 342 (396)
T cd03818 266 WKQHMLDELGGRLDLSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGC-LVVGSDTA--PVREVITDG 342 (396)
T ss_pred HHHHHHHHhhcccCcceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCC-CEEEcCCC--CchhhcccC
Confidence 35555555542 2233332222 35678889999999988765666678999999999 77777642 445555444
Q ss_pred ceEEEecCCChhcHHHHHhCC--CHHHHHHHHHHhccccccccee
Q 038885 314 EIGMFVAEEDVPKLDTILTSI--PPEVILRKQRLLANPSMKRAML 356 (406)
Q Consensus 314 ~~sv~v~~~~~~~l~~~L~~i--~~~~~~~mq~~l~~~~~~~~f~ 356 (406)
.-.+.++..+..++.+.|..+ .++...+|.++..+ .+..+|.
T Consensus 343 ~~G~lv~~~d~~~la~~i~~ll~~~~~~~~l~~~ar~-~~~~~fs 386 (396)
T cd03818 343 ENGLLVDFFDPDALAAAVIELLDDPARRARLRRAARR-TALRYDL 386 (396)
T ss_pred CceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHH-HHHHhcc
Confidence 556777877777666555443 34556667665543 2333444
No 14
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=93.94 E-value=0.29 Score=46.72 Aligned_cols=86 Identities=22% Similarity=0.187 Sum_probs=58.1
Q ss_pred cccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhCC--CH
Q 038885 259 PTTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSI--PP 336 (406)
Q Consensus 259 ~~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~ 336 (406)
..+..+.++.|.+++.|....+.+..++|||.+|| |||.++.-. ..+.+.=....+.++..+..++.+.+..+ .+
T Consensus 254 ~~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~-Pvi~s~~~~--~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~~ 330 (359)
T cd03808 254 RDDVPELLAAADVFVLPSYREGLPRVLLEAMAMGR-PVIATDVPG--CREAVIDGVNGFLVPPGDAEALADAIERLIEDP 330 (359)
T ss_pred cccHHHHHHhccEEEecCcccCcchHHHHHHHcCC-CEEEecCCC--chhhhhcCcceEEECCCCHHHHHHHHHHHHhCH
Confidence 34577889999999999877778899999999996 777776432 22333213445667777777666666543 34
Q ss_pred HHHHHHHHHhc
Q 038885 337 EVILRKQRLLA 347 (406)
Q Consensus 337 ~~~~~mq~~l~ 347 (406)
+...+|.++..
T Consensus 331 ~~~~~~~~~~~ 341 (359)
T cd03808 331 ELRARMGQAAR 341 (359)
T ss_pred HHHHHHHHHHH
Confidence 55556655433
No 15
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=93.69 E-value=0.27 Score=48.45 Aligned_cols=86 Identities=21% Similarity=0.235 Sum_probs=60.7
Q ss_pred ccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhCC--CHH
Q 038885 260 TTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSI--PPE 337 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~~ 337 (406)
.+..+.|..+..+++|.-.++.+..+.|||.+| +|||.++.-. ..+.+.-..-...++..+..++.+.+..+ +++
T Consensus 262 ~~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g-~PvI~s~~~~--~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~~~~ 338 (371)
T cd04962 262 DHVEELLSIADLFLLPSEKESFGLAALEAMACG-VPVVASNAGG--IPEVVKHGETGFLVDVGDVEAMAEYALSLLEDDE 338 (371)
T ss_pred ccHHHHHHhcCEEEeCCCcCCCccHHHHHHHcC-CCEEEeCCCC--chhhhcCCCceEEcCCCCHHHHHHHHHHHHhCHH
Confidence 467888999999999986667788899999999 6788876532 33444333445566777777666555443 466
Q ss_pred HHHHHHHHhcc
Q 038885 338 VILRKQRLLAN 348 (406)
Q Consensus 338 ~~~~mq~~l~~ 348 (406)
...+|+++..+
T Consensus 339 ~~~~~~~~~~~ 349 (371)
T cd04962 339 LWQEFSRAARN 349 (371)
T ss_pred HHHHHHHHHHH
Confidence 67788776653
No 16
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=93.59 E-value=0.095 Score=50.37 Aligned_cols=92 Identities=14% Similarity=0.143 Sum_probs=59.1
Q ss_pred ccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhCC--CHH
Q 038885 260 TTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSI--PPE 337 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~~ 337 (406)
.+..+.|+.+..+++|...+..+.-+.|||.+|| |||.++.-. ..+.+. +..+.++..+..++.+.+..+ .++
T Consensus 260 ~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~-PvI~~~~~~--~~e~~~--~~g~~~~~~~~~~l~~~i~~l~~~~~ 334 (365)
T cd03807 260 SDVPALLNALDVFVLSSLSEGFPNVLLEAMACGL-PVVATDVGD--NAELVG--DTGFLVPPGDPEALAEAIEALLADPA 334 (365)
T ss_pred ccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCC-CEEEcCCCC--hHHHhh--cCCEEeCCCCHHHHHHHHHHHHhChH
Confidence 4577899999999999888888899999999996 777766421 122221 145666766766666555543 235
Q ss_pred HHHHHHHHhcccccccceee
Q 038885 338 VILRKQRLLANPSMKRAMLF 357 (406)
Q Consensus 338 ~~~~mq~~l~~~~~~~~f~y 357 (406)
...+|.++..+ .+.+.|.|
T Consensus 335 ~~~~~~~~~~~-~~~~~~s~ 353 (365)
T cd03807 335 LRQALGEAARE-RIEENFSI 353 (365)
T ss_pred HHHHHHHHHHH-HHHHhCCH
Confidence 55555554443 23344443
No 17
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=93.41 E-value=0.18 Score=50.09 Aligned_cols=94 Identities=18% Similarity=0.180 Sum_probs=62.7
Q ss_pred ccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhCC--CHH
Q 038885 260 TTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSI--PPE 337 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~~ 337 (406)
.+..+.+..|..+++|.-..+.+..++|||.+|+ |||.++.- ...+.+.=....+.++..+..++.+.+..+ +++
T Consensus 294 ~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~-Pvi~s~~~--~~~e~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~ 370 (398)
T cd03800 294 EDLPALYRAADVFVNPALYEPFGLTALEAMACGL-PVVATAVG--GPRDIVVDGVTGLLVDPRDPEALAAALRRLLTDPA 370 (398)
T ss_pred HHHHHHHHhCCEEEecccccccCcHHHHHHhcCC-CEEECCCC--CHHHHccCCCCeEEeCCCCHHHHHHHHHHHHhCHH
Confidence 3467788999999999877777888999999995 99988742 233334323456677777777666555443 366
Q ss_pred HHHHHHHHhcccccccceee
Q 038885 338 VILRKQRLLANPSMKRAMLF 357 (406)
Q Consensus 338 ~~~~mq~~l~~~~~~~~f~y 357 (406)
...+|+++..+ .+.++|.|
T Consensus 371 ~~~~~~~~a~~-~~~~~~s~ 389 (398)
T cd03800 371 LRRRLSRAGLR-RARARYTW 389 (398)
T ss_pred HHHHHHHHHHH-HHHHhCCH
Confidence 67777766543 23344543
No 18
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=93.21 E-value=0.15 Score=49.12 Aligned_cols=85 Identities=18% Similarity=0.186 Sum_probs=59.6
Q ss_pred ccHHHhhhccceEEecCC-CCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhCC--CH
Q 038885 260 TTYYEDMQRAIFCLCPLG-WAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSI--PP 336 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G-~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~ 336 (406)
.+..+.++.+..+++|.- .++.+..++|||.+| +|||.++.- ...+.++-....+.++..+..++.+.+..+ .+
T Consensus 254 ~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G-~Pvi~~~~~--~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~ 330 (359)
T cd03823 254 EEIDDFYAEIDVLVVPSIWPENFPLVIREALAAG-VPVIASDIG--GMAELVRDGVNGLLFPPGDAEDLAAALERLIDDP 330 (359)
T ss_pred HHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCC-CCEEECCCC--CHHHHhcCCCcEEEECCCCHHHHHHHHHHHHhCh
Confidence 567788999999999964 467788899999999 677776532 233445545567788888777666555443 46
Q ss_pred HHHHHHHHHhc
Q 038885 337 EVILRKQRLLA 347 (406)
Q Consensus 337 ~~~~~mq~~l~ 347 (406)
+...+|+++..
T Consensus 331 ~~~~~~~~~~~ 341 (359)
T cd03823 331 DLLERLRAGIE 341 (359)
T ss_pred HHHHHHHHhHH
Confidence 66677776654
No 19
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=93.06 E-value=0.18 Score=50.28 Aligned_cols=84 Identities=19% Similarity=0.097 Sum_probs=59.1
Q ss_pred cccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhCC--CH
Q 038885 259 PTTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSI--PP 336 (406)
Q Consensus 259 ~~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~ 336 (406)
..+..+.|+.+..+++|.-.++.+.-++|||.+|+ |||.+|.-. ..+++.-......++..+..++.+.|..+ .+
T Consensus 263 ~~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~-Pvv~s~~~g--~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~ 339 (374)
T TIGR03088 263 RDDVPALMQALDLFVLPSLAEGISNTILEAMASGL-PVIATAVGG--NPELVQHGVTGALVPPGDAVALARALQPYVSDP 339 (374)
T ss_pred cCCHHHHHHhcCEEEeccccccCchHHHHHHHcCC-CEEEcCCCC--cHHHhcCCCceEEeCCCCHHHHHHHHHHHHhCH
Confidence 45678899999999999766778889999999996 999887532 33444434556777877877766666543 34
Q ss_pred HHHHHHHHH
Q 038885 337 EVILRKQRL 345 (406)
Q Consensus 337 ~~~~~mq~~ 345 (406)
+...+|.++
T Consensus 340 ~~~~~~~~~ 348 (374)
T TIGR03088 340 AARRAHGAA 348 (374)
T ss_pred HHHHHHHHH
Confidence 444555444
No 20
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=92.67 E-value=0.53 Score=46.30 Aligned_cols=94 Identities=24% Similarity=0.248 Sum_probs=60.6
Q ss_pred ccHHHhhhccceEEecCCC------CCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhC
Q 038885 260 TTYYEDMQRAIFCLCPLGW------APWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTS 333 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~------~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~ 333 (406)
.+..+.+..|..+++|.-. ......++|||.+|| |||.++.-. ..+.+.=....+.++..+..++.+.|..
T Consensus 256 ~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~-PvI~s~~~~--~~e~i~~~~~g~~~~~~d~~~l~~~i~~ 332 (367)
T cd05844 256 AEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGV-PVVATRHGG--IPEAVEDGETGLLVPEGDVAALAAALGR 332 (367)
T ss_pred HHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCC-CEEEeCCCC--chhheecCCeeEEECCCCHHHHHHHHHH
Confidence 4567888999988887532 345778999999997 899887643 2333333456777888787777666654
Q ss_pred C--CHHHHHHHHHHhcccccccceee
Q 038885 334 I--PPEVILRKQRLLANPSMKRAMLF 357 (406)
Q Consensus 334 i--~~~~~~~mq~~l~~~~~~~~f~y 357 (406)
+ +++...+|.++..+ .+..+|.|
T Consensus 333 l~~~~~~~~~~~~~a~~-~~~~~~s~ 357 (367)
T cd05844 333 LLADPDLRARMGAAGRR-RVEERFDL 357 (367)
T ss_pred HHcCHHHHHHHHHHHHH-HHHHHCCH
Confidence 3 34556666655432 23344443
No 21
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=92.64 E-value=0.38 Score=50.10 Aligned_cols=85 Identities=20% Similarity=0.208 Sum_probs=62.8
Q ss_pred ccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCC---CCceEEEecCCChhcHHHHHhCC--
Q 038885 260 TTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIP---WEEIGMFVAEEDVPKLDTILTSI-- 334 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~id---w~~~sv~v~~~~~~~l~~~L~~i-- 334 (406)
.+..+.|+.+..++.|...+..+.-++|||.+| +|||.++.-- ..++++ .....+.++..+..++.+.|..+
T Consensus 323 ~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G-~PVI~s~~gg--~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 399 (465)
T PLN02871 323 DELSQAYASGDVFVMPSESETLGFVVLEAMASG-VPVVAARAGG--IPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLA 399 (465)
T ss_pred HHHHHHHHHCCEEEECCcccccCcHHHHHHHcC-CCEEEcCCCC--cHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 567889999999999988888888999999999 8999887432 233332 25667778888877776666543
Q ss_pred CHHHHHHHHHHhc
Q 038885 335 PPEVILRKQRLLA 347 (406)
Q Consensus 335 ~~~~~~~mq~~l~ 347 (406)
+++...+|.++..
T Consensus 400 ~~~~~~~~~~~a~ 412 (465)
T PLN02871 400 DPELRERMGAAAR 412 (465)
T ss_pred CHHHHHHHHHHHH
Confidence 4566667776655
No 22
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=92.62 E-value=0.76 Score=47.10 Aligned_cols=94 Identities=17% Similarity=0.189 Sum_probs=63.8
Q ss_pred ccHHHhhhccceEEecCC------CCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhC
Q 038885 260 TTYYEDMQRAIFCLCPLG------WAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTS 333 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G------~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~ 333 (406)
.+..+.|+.+..++.|.= ..+...-++|||.+|| |||.++.--.| +.+.=..-.+.++..+..++.+.|..
T Consensus 290 ~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~-PVI~t~~~g~~--E~v~~~~~G~lv~~~d~~~la~ai~~ 366 (406)
T PRK15427 290 HEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGI-PVVSTLHSGIP--ELVEADKSGWLVPENDAQALAQRLAA 366 (406)
T ss_pred HHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCC-CEEEeCCCCch--hhhcCCCceEEeCCCCHHHHHHHHHH
Confidence 467789999999999852 1345677999999996 99988753322 34432345667888888877777665
Q ss_pred C---CHHHHHHHHHHhcccccccceee
Q 038885 334 I---PPEVILRKQRLLANPSMKRAMLF 357 (406)
Q Consensus 334 i---~~~~~~~mq~~l~~~~~~~~f~y 357 (406)
+ +++...+|.++..+ .+...|-|
T Consensus 367 l~~~d~~~~~~~~~~ar~-~v~~~f~~ 392 (406)
T PRK15427 367 FSQLDTDELAPVVKRARE-KVETDFNQ 392 (406)
T ss_pred HHhCCHHHHHHHHHHHHH-HHHHhcCH
Confidence 4 56667777776543 34455543
No 23
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=92.47 E-value=0.14 Score=49.09 Aligned_cols=71 Identities=21% Similarity=0.168 Sum_probs=50.3
Q ss_pred ccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhC
Q 038885 260 TTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTS 333 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~ 333 (406)
.+..+.+.+|.++++|...++.+..++||+.+|| |||.++.-. ..+.+.-....+.+...+..++.+.|..
T Consensus 270 ~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~-pvI~~~~~~--~~~~~~~~~~g~~~~~~~~~~l~~~i~~ 340 (377)
T cd03798 270 EEVPAYYAAADVFVLPSLREGFGLVLLEAMACGL-PVVATDVGG--IPEIITDGENGLLVPPGDPEALAEAILR 340 (377)
T ss_pred HHHHHHHHhcCeeecchhhccCChHHHHHHhcCC-CEEEecCCC--hHHHhcCCcceeEECCCCHHHHHHHHHH
Confidence 4577899999999999887788899999999999 566665421 2223333343567777777766655544
No 24
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=92.17 E-value=0.22 Score=48.37 Aligned_cols=83 Identities=13% Similarity=0.172 Sum_probs=57.8
Q ss_pred ccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhC-CC-HH
Q 038885 260 TTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTS-IP-PE 337 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~-i~-~~ 337 (406)
.++.+.+..+.+++.|.-....+..++|||.+|| |||.++.- ...+.+ .+..+.++..+..++.+.|.. +. ++
T Consensus 264 ~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~-pvI~~~~~--~~~e~~--~~~~~~~~~~~~~~~~~~i~~l~~~~~ 338 (365)
T cd03809 264 EELAALYRGARAFVFPSLYEGFGLPVLEAMACGT-PVIASNIS--SLPEVA--GDAALYFDPLDPEALAAAIERLLEDPA 338 (365)
T ss_pred hHHHHHHhhhhhhcccchhccCCCCHHHHhcCCC-cEEecCCC--Ccccee--cCceeeeCCCCHHHHHHHHHHHhcCHH
Confidence 5678889999999999766667778999999997 77776642 223334 345667777777777777766 33 45
Q ss_pred HHHHHHHHhc
Q 038885 338 VILRKQRLLA 347 (406)
Q Consensus 338 ~~~~mq~~l~ 347 (406)
...+|.++..
T Consensus 339 ~~~~~~~~~~ 348 (365)
T cd03809 339 LREELRERGL 348 (365)
T ss_pred HHHHHHHHHH
Confidence 5556665543
No 25
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=92.08 E-value=0.19 Score=48.38 Aligned_cols=83 Identities=19% Similarity=0.285 Sum_probs=52.4
Q ss_pred ccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhCC--CHH
Q 038885 260 TTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSI--PPE 337 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~~ 337 (406)
.+..+.+..+.++++|.-.++.+..++|||.+|| |||.++.- ...+.+.= ...+.++.+ ..++.+.+..+ .++
T Consensus 273 ~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~-PvI~~~~~--~~~~~~~~-~~~~~~~~~-~~~~~~~i~~l~~~~~ 347 (375)
T cd03821 273 EDKAAALADADLFVLPSHSENFGIVVAEALACGT-PVVTTDKV--PWQELIEY-GCGWVVDDD-VDALAAALRRALELPQ 347 (375)
T ss_pred HHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCC-CEEEcCCC--CHHHHhhc-CceEEeCCC-hHHHHHHHHHHHhCHH
Confidence 4677889999999999877788889999999997 77777642 22232221 344444443 24444444332 235
Q ss_pred HHHHHHHHhc
Q 038885 338 VILRKQRLLA 347 (406)
Q Consensus 338 ~~~~mq~~l~ 347 (406)
...+|.++..
T Consensus 348 ~~~~~~~~~~ 357 (375)
T cd03821 348 RLKAMGENGR 357 (375)
T ss_pred HHHHHHHHHH
Confidence 5566665544
No 26
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=91.17 E-value=0.36 Score=48.69 Aligned_cols=93 Identities=17% Similarity=0.153 Sum_probs=61.1
Q ss_pred ccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhCC--CHH
Q 038885 260 TTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSI--PPE 337 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~~ 337 (406)
.+..+.|+.+..++.|.=.++.+.-+.|||++|| |||..+.-- ..+.+.=....+.++..+..++.+.|..+ +++
T Consensus 294 ~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~-Pvi~~~~~~--~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~~~~ 370 (405)
T TIGR03449 294 EELVHVYRAADVVAVPSYNESFGLVAMEAQACGT-PVVAARVGG--LPVAVADGETGLLVDGHDPADWADALARLLDDPR 370 (405)
T ss_pred HHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCC-CEEEecCCC--cHhhhccCCceEECCCCCHHHHHHHHHHHHhCHH
Confidence 5677889999999998766667788999999996 888876422 22334223445667777777665555433 355
Q ss_pred HHHHHHHHhcccccccceee
Q 038885 338 VILRKQRLLANPSMKRAMLF 357 (406)
Q Consensus 338 ~~~~mq~~l~~~~~~~~f~y 357 (406)
...+|.++..+ ..+.|.|
T Consensus 371 ~~~~~~~~~~~--~~~~fsw 388 (405)
T TIGR03449 371 TRIRMGAAAVE--HAAGFSW 388 (405)
T ss_pred HHHHHHHHHHH--HHHhCCH
Confidence 56677766553 2344554
No 27
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=90.77 E-value=0.37 Score=48.02 Aligned_cols=86 Identities=19% Similarity=0.268 Sum_probs=56.9
Q ss_pred cccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCCh------hcHHHHHh
Q 038885 259 PTTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDV------PKLDTILT 332 (406)
Q Consensus 259 ~~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~------~~l~~~L~ 332 (406)
..+..+.|..|..++.|.-..+.+.-++|||.+|| |||.++.-. ..+++.=....+.++..+. ..+.+.|.
T Consensus 271 ~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~-PvI~s~~~~--~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~ 347 (388)
T TIGR02149 271 KEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGT-PVVASATGG--IPEVVVDGETGFLVPPDNSDADGFQAELAKAIN 347 (388)
T ss_pred HHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCC-CEEEeCCCC--HHHHhhCCCceEEcCCCCCcccchHHHHHHHHH
Confidence 34577889999999999766777788999999999 888887432 2233322334556665555 55555554
Q ss_pred CC--CHHHHHHHHHHhc
Q 038885 333 SI--PPEVILRKQRLLA 347 (406)
Q Consensus 333 ~i--~~~~~~~mq~~l~ 347 (406)
.+ ++++..+|.++..
T Consensus 348 ~l~~~~~~~~~~~~~a~ 364 (388)
T TIGR02149 348 ILLADPELAKKMGIAGR 364 (388)
T ss_pred HHHhCHHHHHHHHHHHH
Confidence 33 4566667766544
No 28
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=90.39 E-value=0.35 Score=48.09 Aligned_cols=83 Identities=19% Similarity=0.204 Sum_probs=58.0
Q ss_pred ccHHHhhhccceEEecCCCC-----------CCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHH
Q 038885 260 TTYYEDMQRAIFCLCPLGWA-----------PWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLD 328 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~-----------~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~ 328 (406)
++..+.|+. .|+|++.+++ .....++++|++|+ |||+++.-.++ +.+.=....+.++ ++.++.
T Consensus 218 eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~-PVI~~~~~~~~--~~V~~~~~G~~v~--~~~el~ 291 (333)
T PRK09814 218 EELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGL-PVIVWSKAAIA--DFIVENGLGFVVD--SLEELP 291 (333)
T ss_pred HHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCC-CEEECCCccHH--HHHHhCCceEEeC--CHHHHH
Confidence 455566666 9999887651 23445888888885 89987753332 3333245566665 567899
Q ss_pred HHHhCCCHHHHHHHHHHhcc
Q 038885 329 TILTSIPPEVILRKQRLLAN 348 (406)
Q Consensus 329 ~~L~~i~~~~~~~mq~~l~~ 348 (406)
+.|.+++++++.+|+++..+
T Consensus 292 ~~l~~~~~~~~~~m~~n~~~ 311 (333)
T PRK09814 292 EIIDNITEEEYQEMVENVKK 311 (333)
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999998764
No 29
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=90.07 E-value=0.75 Score=44.77 Aligned_cols=81 Identities=16% Similarity=0.149 Sum_probs=54.0
Q ss_pred ccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhCC---CH
Q 038885 260 TTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSI---PP 336 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i---~~ 336 (406)
.+..+.|+.+.+.+.|....+.+..++|||.+|| |||.+|.-. ..+.+. +....++..+..++.+.+..+ ++
T Consensus 254 ~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~-PvI~~~~~~--~~e~i~--~~g~~~~~~~~~~~~~~i~~ll~~~~ 328 (360)
T cd04951 254 DDIAAYYNAADLFVLSSAWEGFGLVVAEAMACEL-PVVATDAGG--VREVVG--DSGLIVPISDPEALANKIDEILKMSG 328 (360)
T ss_pred ccHHHHHHhhceEEecccccCCChHHHHHHHcCC-CEEEecCCC--hhhEec--CCceEeCCCCHHHHHHHHHHHHhCCH
Confidence 4567889999999999887788889999999999 888876421 222221 234456667776666555543 44
Q ss_pred HHHHHHHHH
Q 038885 337 EVILRKQRL 345 (406)
Q Consensus 337 ~~~~~mq~~ 345 (406)
+....|.+.
T Consensus 329 ~~~~~~~~~ 337 (360)
T cd04951 329 EERDIIGAR 337 (360)
T ss_pred HHHHHHHHH
Confidence 444444443
No 30
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=89.76 E-value=0.28 Score=41.23 Aligned_cols=68 Identities=22% Similarity=0.239 Sum_probs=39.3
Q ss_pred ccHHHhhhccceEEecCC-CCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHh
Q 038885 260 TTYYEDMQRAIFCLCPLG-WAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILT 332 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G-~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~ 332 (406)
.++.+.++++..+++|.- +...+..++|++.+||- ||.++. ++.+.+.-....+.+ .++..++.+.|.
T Consensus 62 ~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~p-vi~~~~---~~~~~~~~~~~~~~~-~~~~~~l~~~i~ 130 (135)
T PF13692_consen 62 EELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKP-VIASDN---GAEGIVEEDGCGVLV-ANDPEELAEAIE 130 (135)
T ss_dssp HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT---EEEEHH---HCHCHS---SEEEE--TT-HHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCC-EEECCc---chhhheeecCCeEEE-CCCHHHHHHHHH
Confidence 468889999999999963 23567899999999985 454554 334333224556666 666666655554
No 31
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=89.56 E-value=0.42 Score=37.89 Aligned_cols=80 Identities=16% Similarity=0.047 Sum_probs=44.1
Q ss_pred EEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEec-CCChhcHHHHHhCCCHHHHHHHHHHhcccc
Q 038885 272 CLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVA-EEDVPKLDTILTSIPPEVILRKQRLLANPS 350 (406)
Q Consensus 272 CL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~-~~~~~~l~~~L~~i~~~~~~~mq~~l~~~~ 350 (406)
||-|.-.+..+.|++|++.+|+..|.- +.- .+.+.++..+-.+.+. .+++.+....|.+ .+++.++|.++..+ .
T Consensus 2 ~Ln~~~~~~~~~r~~E~~a~G~~vi~~-~~~--~~~~~~~~~~~~~~~~~~~el~~~i~~ll~-~~~~~~~ia~~a~~-~ 76 (92)
T PF13524_consen 2 NLNPSRSDGPNMRIFEAMACGTPVISD-DSP--GLREIFEDGEHIITYNDPEELAEKIEYLLE-NPEERRRIAKNARE-R 76 (92)
T ss_pred EeeCCCCCCCchHHHHHHHCCCeEEEC-ChH--HHHHHcCCCCeEEEECCHHHHHHHHHHHHC-CHHHHHHHHHHHHH-H
Confidence 444543355688999999999975443 321 1222344454455554 3344443333333 67777777776554 3
Q ss_pred ccccee
Q 038885 351 MKRAML 356 (406)
Q Consensus 351 ~~~~f~ 356 (406)
+..++.
T Consensus 77 v~~~~t 82 (92)
T PF13524_consen 77 VLKRHT 82 (92)
T ss_pred HHHhCC
Confidence 444443
No 32
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=88.91 E-value=0.75 Score=45.91 Aligned_cols=84 Identities=15% Similarity=0.122 Sum_probs=52.3
Q ss_pred ccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhCC--CHH
Q 038885 260 TTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSI--PPE 337 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~~ 337 (406)
.+..+.++.+.++++|...++.+..++|||.+| +|||.++.-- +-+-+.+. .-.+.++. +..++.+.+..+ .++
T Consensus 291 ~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G-~PvI~s~~~~-~~e~i~~~-~~g~~~~~-~~~~~a~~i~~l~~~~~ 366 (392)
T cd03805 291 SQKELLLSSARALLYTPSNEHFGIVPLEAMYAG-KPVIACNSGG-PLETVVDG-ETGFLCEP-TPEEFAEAMLKLANDPD 366 (392)
T ss_pred HHHHHHHhhCeEEEECCCcCCCCchHHHHHHcC-CCEEEECCCC-cHHHhccC-CceEEeCC-CHHHHHHHHHHHHhChH
Confidence 345678999999999988777788899999999 5677776421 11222333 23444554 555554444332 244
Q ss_pred HHHHHHHHhc
Q 038885 338 VILRKQRLLA 347 (406)
Q Consensus 338 ~~~~mq~~l~ 347 (406)
...+|+++..
T Consensus 367 ~~~~~~~~a~ 376 (392)
T cd03805 367 LADRMGAAGR 376 (392)
T ss_pred HHHHHHHHHH
Confidence 5667766544
No 33
>PRK10307 putative glycosyl transferase; Provisional
Probab=88.73 E-value=0.6 Score=47.42 Aligned_cols=94 Identities=14% Similarity=0.123 Sum_probs=62.3
Q ss_pred ccHHHhhhccceEEecCCCCC----CchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhCC-
Q 038885 260 TTYYEDMQRAIFCLCPLGWAP----WSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSI- 334 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~~----~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i- 334 (406)
.+..+.++.+..++.|.=.+. ....++|+|++| +|||.++.--....+.+. .-.+.++..+..++.+.|..+
T Consensus 295 ~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G-~PVi~s~~~g~~~~~~i~--~~G~~~~~~d~~~la~~i~~l~ 371 (412)
T PRK10307 295 DRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASG-RNVVATAEPGTELGQLVE--GIGVCVEPESVEALVAAIAALA 371 (412)
T ss_pred HHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcC-CCEEEEeCCCchHHHHHh--CCcEEeCCCCHHHHHHHHHHHH
Confidence 467788999999988843322 244589999999 688887642222334555 457777888888888777655
Q ss_pred -CHHHHHHHHHHhcccccccceee
Q 038885 335 -PPEVILRKQRLLANPSMKRAMLF 357 (406)
Q Consensus 335 -~~~~~~~mq~~l~~~~~~~~f~y 357 (406)
+++...+|+++..+ .+..+|.|
T Consensus 372 ~~~~~~~~~~~~a~~-~~~~~fs~ 394 (412)
T PRK10307 372 RQALLRPKLGTVARE-YAERTLDK 394 (412)
T ss_pred hCHHHHHHHHHHHHH-HHHHHcCH
Confidence 35566777776553 24455654
No 34
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=88.51 E-value=0.79 Score=46.43 Aligned_cols=94 Identities=9% Similarity=0.002 Sum_probs=57.6
Q ss_pred ccHHHhhhccceEEecCCC-CCCchhHHHHHHhCceeEEEeccccCCCCCCC-CCCceEEEecCCChhcHHHHHhC-CCH
Q 038885 260 TTYYEDMQRAIFCLCPLGW-APWSPRLVEAVVFGCIPVIIADDIVLPFADAI-PWEEIGMFVAEEDVPKLDTILTS-IPP 336 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~-~~~s~rl~dal~~GCIPVii~d~~~lPf~~~i-dw~~~sv~v~~~~~~~l~~~L~~-i~~ 336 (406)
.+..+.|+.|..+++|... ++.+.-++|||++| +|||.++.--. .+++ |-..--+.++..+..++.+.|.. +.+
T Consensus 268 ~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G-~PVI~s~~gg~--~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d 344 (380)
T PRK15484 268 EKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAG-KPVLASTKGGI--TEFVLEGITGYHLAEPMTSDSIISDINRTLAD 344 (380)
T ss_pred HHHHHHHHhCCEEEeCCCCccccccHHHHHHHcC-CCEEEeCCCCc--HhhcccCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 4567889999999999864 66678899999999 78988875322 2333 22221224455666666555543 334
Q ss_pred HHHHHHHHHhcccccccceee
Q 038885 337 EVILRKQRLLANPSMKRAMLF 357 (406)
Q Consensus 337 ~~~~~mq~~l~~~~~~~~f~y 357 (406)
.+..+|.++..+ .+..+|.|
T Consensus 345 ~~~~~~~~~ar~-~~~~~fsw 364 (380)
T PRK15484 345 PELTQIAEQAKD-FVFSKYSW 364 (380)
T ss_pred HHHHHHHHHHHH-HHHHhCCH
Confidence 445566655442 23455554
No 35
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=88.26 E-value=4.4 Score=40.40 Aligned_cols=92 Identities=17% Similarity=0.141 Sum_probs=56.6
Q ss_pred ccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCC-hh-cHHHHHhCCCHH
Q 038885 260 TTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEED-VP-KLDTILTSIPPE 337 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~-~~-~l~~~L~~i~~~ 337 (406)
.+....++.+..++.|...++...-+.|||++| +|||.++.-.++ +.|.-....+.++..+ +. .|...|. +++
T Consensus 265 ~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G-~Pvv~s~~~~~~--~~i~~~~~g~~~~~~~~~a~~i~~ll~--~~~ 339 (372)
T cd03792 265 LEVNALQRASTVVLQKSIREGFGLTVTEALWKG-KPVIAGPVGGIP--LQIEDGETGFLVDTVEEAAVRILYLLR--DPE 339 (372)
T ss_pred HHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcC-CCEEEcCCCCch--hhcccCCceEEeCCcHHHHHHHHHHHc--CHH
Confidence 556788899999999988788889999999999 599998753333 3332223333443322 11 2333333 355
Q ss_pred HHHHHHHHhcccccccceee
Q 038885 338 VILRKQRLLANPSMKRAMLF 357 (406)
Q Consensus 338 ~~~~mq~~l~~~~~~~~f~y 357 (406)
...+|.++..+ .+...|.|
T Consensus 340 ~~~~~~~~a~~-~~~~~~s~ 358 (372)
T cd03792 340 LRRKMGANARE-HVRENFLI 358 (372)
T ss_pred HHHHHHHHHHH-HHHHHcCH
Confidence 66777766543 13344544
No 36
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=88.09 E-value=1.2 Score=42.99 Aligned_cols=70 Identities=21% Similarity=0.257 Sum_probs=45.7
Q ss_pred ccHHHhhhccceEEecCC-CCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhCC
Q 038885 260 TTYYEDMQRAIFCLCPLG-WAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSI 334 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G-~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i 334 (406)
.+..+.++.+.+++.|.- ....+..++|||++|+ |||.+|.--. .++++=..-.+.++. ..++.+.|+.+
T Consensus 235 ~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~-PvI~~~~~~~--~e~i~~~~~g~l~~~--~~~l~~~l~~l 305 (335)
T cd03802 235 AEKAELLGNARALLFPILWEEPFGLVMIEAMACGT-PVIAFRRGAV--PEVVEDGVTGFLVDS--VEELAAAVARA 305 (335)
T ss_pred HHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCC-CEEEeCCCCc--hhheeCCCcEEEeCC--HHHHHHHHHHH
Confidence 346688999999999975 3566788999999997 9998875322 233332222333333 55555555544
No 37
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=88.00 E-value=1.8 Score=42.25 Aligned_cols=82 Identities=20% Similarity=0.255 Sum_probs=49.5
Q ss_pred ccHHHhhhccceEEecCCC-CCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCC-hhcHHHHHhCCCHH
Q 038885 260 TTYYEDMQRAIFCLCPLGW-APWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEED-VPKLDTILTSIPPE 337 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~-~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~-~~~l~~~L~~i~~~ 337 (406)
.+..+.+.++..++.|.-. +..+..++|||.+|| |||.++.- +..+++.- -...++..+ +.+....|-. .++
T Consensus 259 ~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~-PvI~s~~~--~~~e~~~~--~g~~~~~~~~l~~~i~~l~~-~~~ 332 (363)
T cd04955 259 QELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGC-PVLASDNP--FNREVLGD--KAIYFKVGDDLASLLEELEA-DPE 332 (363)
T ss_pred HHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCC-CEEEecCC--ccceeecC--CeeEecCchHHHHHHHHHHh-CHH
Confidence 4567888888888888665 667788999999999 77777642 23344432 233344444 3333333322 235
Q ss_pred HHHHHHHHhc
Q 038885 338 VILRKQRLLA 347 (406)
Q Consensus 338 ~~~~mq~~l~ 347 (406)
...+|.++..
T Consensus 333 ~~~~~~~~~~ 342 (363)
T cd04955 333 EVSAMAKAAR 342 (363)
T ss_pred HHHHHHHHHH
Confidence 5566665544
No 38
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=87.44 E-value=2 Score=43.44 Aligned_cols=91 Identities=12% Similarity=0.152 Sum_probs=54.4
Q ss_pred cHHHhhhccceEEecCC-CCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhCC--CHH
Q 038885 261 TYYEDMQRAIFCLCPLG-WAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSI--PPE 337 (406)
Q Consensus 261 ~y~~~l~~S~FCL~p~G-~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~~ 337 (406)
+....++.+..+++|.= .++....+.|||++|| |||.++.- .+.+..=..-.+.++ .+..++.+.+..+ +++
T Consensus 290 ~~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~-PVV~t~~~---~~~i~~~~~~g~lv~-~~~~~la~ai~~ll~~~~ 364 (397)
T TIGR03087 290 DVRPYLAHAAVAVAPLRIARGIQNKVLEAMAMAK-PVVASPEA---AEGIDALPGAELLVA-ADPADFAAAILALLANPA 364 (397)
T ss_pred CHHHHHHhCCEEEecccccCCcccHHHHHHHcCC-CEEecCcc---cccccccCCcceEeC-CCHHHHHHHHHHHHcCHH
Confidence 46677889999998852 1345667999999998 89888742 122111122345555 5666655555432 355
Q ss_pred HHHHHHHHhcccccccceee
Q 038885 338 VILRKQRLLANPSMKRAMLF 357 (406)
Q Consensus 338 ~~~~mq~~l~~~~~~~~f~y 357 (406)
...+|.++..+ .+...|.|
T Consensus 365 ~~~~~~~~ar~-~v~~~fsw 383 (397)
T TIGR03087 365 EREELGQAARR-RVLQHYHW 383 (397)
T ss_pred HHHHHHHHHHH-HHHHhCCH
Confidence 56667665543 23455654
No 39
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=87.44 E-value=1.6 Score=45.67 Aligned_cols=86 Identities=16% Similarity=0.058 Sum_probs=58.4
Q ss_pred cccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCC------CceEEEecCCChhcHHHHHh
Q 038885 259 PTTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPW------EEIGMFVAEEDVPKLDTILT 332 (406)
Q Consensus 259 ~~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw------~~~sv~v~~~~~~~l~~~L~ 332 (406)
..+..+.|..+..++.|.-..+...-++|||++|| |||.+|.-- ..+.+.= ....+.++..+..++.+.+.
T Consensus 361 ~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~-PVVatd~g~--~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~ 437 (475)
T cd03813 361 FQNVKEYLPKLDVLVLTSISEGQPLVILEAMAAGI-PVVATDVGS--CRELIEGADDEALGPAGEVVPPADPEALARAIL 437 (475)
T ss_pred CccHHHHHHhCCEEEeCchhhcCChHHHHHHHcCC-CEEECCCCC--hHHHhcCCcccccCCceEEECCCCHHHHHHHHH
Confidence 45667888899999998765667788999999999 788776421 1222211 23577778888777666555
Q ss_pred CC--CHHHHHHHHHHhc
Q 038885 333 SI--PPEVILRKQRLLA 347 (406)
Q Consensus 333 ~i--~~~~~~~mq~~l~ 347 (406)
.+ +++...+|.++..
T Consensus 438 ~ll~~~~~~~~~~~~a~ 454 (475)
T cd03813 438 RLLKDPELRRAMGEAGR 454 (475)
T ss_pred HHhcCHHHHHHHHHHHH
Confidence 43 4566677776554
No 40
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=87.06 E-value=1.3 Score=43.66 Aligned_cols=70 Identities=21% Similarity=0.191 Sum_probs=48.0
Q ss_pred ccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhC
Q 038885 260 TTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTS 333 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~ 333 (406)
.+..+.++.+..+++|.- ...+...+|||++|| |||.++.-.. .+.+.=.+..+.++..+...+.+.|..
T Consensus 253 ~~~~~~~~~ad~~v~ps~-e~~g~~~~Eama~G~-Pvi~~~~~~~--~e~i~~~~~G~~~~~~~~~~la~~i~~ 322 (351)
T cd03804 253 EELRDLYARARAFLFPAE-EDFGIVPVEAMASGT-PVIAYGKGGA--LETVIDGVTGILFEEQTVESLAAAVER 322 (351)
T ss_pred HHHHHHHHhCCEEEECCc-CCCCchHHHHHHcCC-CEEEeCCCCC--cceeeCCCCEEEeCCCCHHHHHHHHHH
Confidence 457889999999999866 566777899999998 9988864222 233321345667777776655554443
No 41
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=87.05 E-value=1 Score=43.66 Aligned_cols=85 Identities=18% Similarity=0.141 Sum_probs=55.8
Q ss_pred ccHHHhhhccceEEecCCC------CCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhC
Q 038885 260 TTYYEDMQRAIFCLCPLGW------APWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTS 333 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~------~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~ 333 (406)
.+..+.++++.++++|... .+.+..++|||.+||-.|. ++.- ...+.+.=..-.+.+++.+..++.+.|..
T Consensus 247 ~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~-~~~~--~~~~~i~~~~~g~~~~~~~~~~l~~~i~~ 323 (355)
T cd03799 247 EEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVIS-TDVS--GIPELVEDGETGLLVPPGDPEALADAIER 323 (355)
T ss_pred HHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEe-cCCC--CcchhhhCCCceEEeCCCCHHHHHHHHHH
Confidence 4677889999999999765 5678899999999986654 4432 22334432334666777677666655554
Q ss_pred C--CHHHHHHHHHHhc
Q 038885 334 I--PPEVILRKQRLLA 347 (406)
Q Consensus 334 i--~~~~~~~mq~~l~ 347 (406)
+ .+++..+|.++..
T Consensus 324 ~~~~~~~~~~~~~~a~ 339 (355)
T cd03799 324 LLDDPELRREMGEAGR 339 (355)
T ss_pred HHhCHHHHHHHHHHHH
Confidence 3 3455666666544
No 42
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=86.24 E-value=1.7 Score=43.05 Aligned_cols=87 Identities=23% Similarity=0.256 Sum_probs=57.3
Q ss_pred cccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhCC--CH
Q 038885 259 PTTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSI--PP 336 (406)
Q Consensus 259 ~~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~ 336 (406)
..+..+.++++..++.|.-.++.+..+.|||.+|| |||..+--.-| .+.+.=..-.+.++..+..++.+.|..+ .+
T Consensus 269 ~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~-PvI~~~~~~g~-~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~~ 346 (372)
T cd04949 269 TRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGL-PVISYDVNYGP-SEIIEDGENGYLVPKGDIEALAEAIIELLNDP 346 (372)
T ss_pred CCCHHHHHhhhhEEEecccccccChHHHHHHhCCC-CEEEecCCCCc-HHHcccCCCceEeCCCcHHHHHHHHHHHHcCH
Confidence 34567889999999999766677888999999999 77766521111 1222223455667777776666555443 35
Q ss_pred HHHHHHHHHhc
Q 038885 337 EVILRKQRLLA 347 (406)
Q Consensus 337 ~~~~~mq~~l~ 347 (406)
+...+|+++..
T Consensus 347 ~~~~~~~~~a~ 357 (372)
T cd04949 347 KLLQKFSEAAY 357 (372)
T ss_pred HHHHHHHHHHH
Confidence 56777776654
No 43
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=85.93 E-value=1 Score=46.60 Aligned_cols=93 Identities=20% Similarity=0.165 Sum_probs=57.0
Q ss_pred cHHHhhhcc----ceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhCC--
Q 038885 261 TYYEDMQRA----IFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSI-- 334 (406)
Q Consensus 261 ~y~~~l~~S----~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i-- 334 (406)
+..+.++.+ ..++.|.-..+.+.-+.|||++|| |||.++.-- ..+++.=..-.+.++..|...+.+.+..+
T Consensus 329 ~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~-PvV~s~~gg--~~eiv~~~~~G~lv~~~d~~~la~~i~~ll~ 405 (439)
T TIGR02472 329 DVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGL-PIVATDDGG--PRDIIANCRNGLLVDVLDLEAIASALEDALS 405 (439)
T ss_pred HHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCC-CEEEeCCCC--cHHHhcCCCcEEEeCCCCHHHHHHHHHHHHh
Confidence 344555544 455566655677788999999999 999987522 23444323456678888877766555443
Q ss_pred CHHHHHHHHHHhcccccccceee
Q 038885 335 PPEVILRKQRLLANPSMKRAMLF 357 (406)
Q Consensus 335 ~~~~~~~mq~~l~~~~~~~~f~y 357 (406)
+++...+|.++..+ .+..+|.|
T Consensus 406 ~~~~~~~~~~~a~~-~~~~~fsw 427 (439)
T TIGR02472 406 DSSQWQLWSRNGIE-GVRRHYSW 427 (439)
T ss_pred CHHHHHHHHHHHHH-HHHHhCCH
Confidence 34555556555432 24455654
No 44
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=85.20 E-value=2.2 Score=44.43 Aligned_cols=83 Identities=20% Similarity=0.225 Sum_probs=55.3
Q ss_pred cHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCC-CCC-----ceEEEecCCChhcHHHHHhCC
Q 038885 261 TYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAI-PWE-----EIGMFVAEEDVPKLDTILTSI 334 (406)
Q Consensus 261 ~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~i-dw~-----~~sv~v~~~~~~~l~~~L~~i 334 (406)
...+.++.+.++++|.-..+.+.-..|||++||.||+ ++.- ...+.+ |.. .-.+.++..+..++.+.|..+
T Consensus 358 ~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~-s~~g--g~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~ 434 (473)
T TIGR02095 358 LAHLIYAGADFILMPSRFEPCGLTQLYAMRYGTVPIV-RRTG--GLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRA 434 (473)
T ss_pred HHHHHHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEE-ccCC--CccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHH
Confidence 3567889999999998888888999999999997665 4322 122222 321 456677777777665554432
Q ss_pred ------CHHHHHHHHHHh
Q 038885 335 ------PPEVILRKQRLL 346 (406)
Q Consensus 335 ------~~~~~~~mq~~l 346 (406)
.++...+|.++.
T Consensus 435 l~~~~~~~~~~~~~~~~~ 452 (473)
T TIGR02095 435 LRLYRQDPSLWEALQKNA 452 (473)
T ss_pred HHHHhcCHHHHHHHHHHH
Confidence 345566666554
No 45
>PRK14099 glycogen synthase; Provisional
Probab=84.86 E-value=2.7 Score=44.26 Aligned_cols=93 Identities=18% Similarity=0.172 Sum_probs=60.0
Q ss_pred ccHHHhh-hccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCC--------ceEEEecCCChhcHHHH
Q 038885 260 TTYYEDM-QRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWE--------EIGMFVAEEDVPKLDTI 330 (406)
Q Consensus 260 ~~y~~~l-~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~--------~~sv~v~~~~~~~l~~~ 330 (406)
.+....+ +.|.+.+.|.=+++.+.-..|||++||+||+ ++.=-++ +-+.|.. .-.+.++..+...|.+.
T Consensus 360 ~~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVv-s~~GGl~-d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~a 437 (485)
T PRK14099 360 EALAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVV-ARVGGLA-DTVVDANEMAIATGVATGVQFSPVTADALAAA 437 (485)
T ss_pred HHHHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEE-eCCCCcc-ceeecccccccccCCCceEEeCCCCHHHHHHH
Confidence 3445555 4689999998888999999999999999988 4321111 1123432 34677788887776665
Q ss_pred HhC----C-CHHHHHHHHHHhcccccccceeec
Q 038885 331 LTS----I-PPEVILRKQRLLANPSMKRAMLFP 358 (406)
Q Consensus 331 L~~----i-~~~~~~~mq~~l~~~~~~~~f~y~ 358 (406)
|.. + +++...+|+++.. ...|.|.
T Consensus 438 i~~a~~l~~d~~~~~~l~~~~~----~~~fSw~ 466 (485)
T PRK14099 438 LRKTAALFADPVAWRRLQRNGM----TTDVSWR 466 (485)
T ss_pred HHHHHHHhcCHHHHHHHHHHhh----hhcCChH
Confidence 543 2 3556666776543 3456654
No 46
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=84.47 E-value=2.9 Score=40.17 Aligned_cols=84 Identities=19% Similarity=0.152 Sum_probs=52.4
Q ss_pred ccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhCC--CHH
Q 038885 260 TTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSI--PPE 337 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~~ 337 (406)
.+..+.+..|.+.++|....+.+..++|||.+|+- ||..+.- .+.+.+.=..-.+.++..+. ++.+.+..+ .++
T Consensus 270 ~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~P-vI~~~~~--~~~~~i~~~~~g~~~~~~~~-~~~~~i~~l~~~~~ 345 (374)
T cd03817 270 EELPDYYKAADLFVFASTTETQGLVLLEAMAAGLP-VVAVDAP--GLPDLVADGENGFLFPPGDE-ALAEALLRLLQDPE 345 (374)
T ss_pred HHHHHHHHHcCEEEecccccCcChHHHHHHHcCCc-EEEeCCC--ChhhheecCceeEEeCCCCH-HHHHHHHHHHhChH
Confidence 46778899999999998777778899999999875 5555432 22333332344556655553 444333332 244
Q ss_pred HHHHHHHHhc
Q 038885 338 VILRKQRLLA 347 (406)
Q Consensus 338 ~~~~mq~~l~ 347 (406)
..++|+++..
T Consensus 346 ~~~~~~~~~~ 355 (374)
T cd03817 346 LRRRLSKNAE 355 (374)
T ss_pred HHHHHHHHHH
Confidence 4456666554
No 47
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=84.44 E-value=3 Score=40.62 Aligned_cols=84 Identities=14% Similarity=0.064 Sum_probs=56.4
Q ss_pred cHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhCC--CHHH
Q 038885 261 TYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSI--PPEV 338 (406)
Q Consensus 261 ~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~~~~ 338 (406)
.+.+.|+.|.+++.|....+.+.-++|||.+||- ||..+. -+..+.+.=..-.+.++..+..++.+.|..+ .+++
T Consensus 257 ~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~P-vI~~~~--~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~~~~~~ 333 (365)
T cd03825 257 SLALIYSAADVFVVPSLQENFPNTAIEALACGTP-VVAFDV--GGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLADPDE 333 (365)
T ss_pred HHHHHHHhCCEEEeccccccccHHHHHHHhcCCC-EEEecC--CCChhheeCCCceEEeCCCCHHHHHHHHHHHHhCHHH
Confidence 4567899999999998888889999999999985 555553 2333444323456667776666655555432 3455
Q ss_pred HHHHHHHhc
Q 038885 339 ILRKQRLLA 347 (406)
Q Consensus 339 ~~~mq~~l~ 347 (406)
..+|+++..
T Consensus 334 ~~~~~~~~~ 342 (365)
T cd03825 334 REELGEAAR 342 (365)
T ss_pred HHHHHHHHH
Confidence 666666544
No 48
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=83.71 E-value=4.2 Score=41.85 Aligned_cols=50 Identities=22% Similarity=0.252 Sum_probs=38.1
Q ss_pred cccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCC
Q 038885 259 PTTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAI 310 (406)
Q Consensus 259 ~~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~i 310 (406)
..+..+.|+.|..++.|.=+.+.+.-+.|||++||.||.-... -|.++++
T Consensus 315 ~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~g--gp~~~iv 364 (419)
T cd03806 315 FEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASG--GPLLDIV 364 (419)
T ss_pred HHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEEEcCC--CCchhee
Confidence 3567889999999999877778889999999999977654321 2555555
No 49
>PRK00654 glgA glycogen synthase; Provisional
Probab=83.17 E-value=3.6 Score=42.88 Aligned_cols=82 Identities=21% Similarity=0.263 Sum_probs=54.7
Q ss_pred HHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCC-CCCC-----ceEEEecCCChhcHHHHHhCC-
Q 038885 262 YYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADA-IPWE-----EIGMFVAEEDVPKLDTILTSI- 334 (406)
Q Consensus 262 y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~-idw~-----~~sv~v~~~~~~~l~~~L~~i- 334 (406)
....++.+.+++.|.=.++.+.-..|||++||+||+-... -+ .+. .|.. .-.+.++..+...|.+.|..+
T Consensus 350 ~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~g-G~--~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l 426 (466)
T PRK00654 350 AHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTG-GL--ADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRAL 426 (466)
T ss_pred HHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCC-Cc--cceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHH
Confidence 4567899999999988888899999999999988774321 11 222 2321 446677887877666555432
Q ss_pred ----CHHHHHHHHHHh
Q 038885 335 ----PPEVILRKQRLL 346 (406)
Q Consensus 335 ----~~~~~~~mq~~l 346 (406)
.++...+|.++.
T Consensus 427 ~~~~~~~~~~~~~~~~ 442 (466)
T PRK00654 427 ELYRQPPLWRALQRQA 442 (466)
T ss_pred HHhcCHHHHHHHHHHH
Confidence 344455665544
No 50
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=82.58 E-value=2.1 Score=35.20 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=28.6
Q ss_pred cccCchhhHHHHHHHHccCCccCCCcCCCcEEEeecCCccccC
Q 038885 62 CLTHMFAAEIFMHRFLLSSPVRTLNPEEADWFYTPIYPTCDLT 104 (406)
Q Consensus 62 ~~~~~y~~E~~~~~~L~~S~~rT~dPeeAdlFyVP~~~~~~~~ 104 (406)
|..+++.+|.+.-......--.|++|++||+++| -+|.+.
T Consensus 9 C~~N~~Dse~i~~~l~~~G~~~~~~~e~AD~iii---NTC~V~ 48 (98)
T PF00919_consen 9 CQMNQYDSERIASILQAAGYEIVDDPEEADVIII---NTCTVR 48 (98)
T ss_pred CcccHHHHHHHHHHHHhcCCeeecccccCCEEEE---EcCCCC
Confidence 6777888887664433334467999999999986 377653
No 51
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=81.63 E-value=7.8 Score=36.55 Aligned_cols=65 Identities=20% Similarity=0.229 Sum_probs=45.6
Q ss_pred ccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcH
Q 038885 260 TTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKL 327 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l 327 (406)
.+..+.+..+.++++|.-.++.+..++|||.+||. ||.+|.- ...+.+.=....+.++.++...+
T Consensus 255 ~~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~P-vI~~~~~--~~~e~i~~~~~g~~~~~~~~~~~ 319 (353)
T cd03811 255 SNPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTP-VVATDCP--GPREILEDGENGLLVPVGDEAAL 319 (353)
T ss_pred CCHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCC-EEEcCCC--ChHHHhcCCCceEEECCCCHHHH
Confidence 34668899999999998777778899999999986 4555432 22233433445667777776665
No 52
>PRK14098 glycogen synthase; Provisional
Probab=81.35 E-value=4.7 Score=42.59 Aligned_cols=91 Identities=16% Similarity=0.093 Sum_probs=59.1
Q ss_pred cHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCC-CC---CceEEEecCCChhcHHHHHhCC--
Q 038885 261 TYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAI-PW---EEIGMFVAEEDVPKLDTILTSI-- 334 (406)
Q Consensus 261 ~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~i-dw---~~~sv~v~~~~~~~l~~~L~~i-- 334 (406)
...+.++.|.++++|.-..+.+.-..|||++||+||+....- ++ +.+ |+ ..-.+.++..+...|.+.|..+
T Consensus 374 ~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GG-l~--d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 374 FFHLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGG-IV--ETIEEVSEDKGSGFIFHDYTPEALVAKLGEALA 450 (489)
T ss_pred HHHHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCC-Cc--eeeecCCCCCCceeEeCCCCHHHHHHHHHHHHH
Confidence 356788999999999888888999999999999999865321 11 111 21 2345667777777666555431
Q ss_pred ---CHHHHHHHHHHhcccccccceeec
Q 038885 335 ---PPEVILRKQRLLANPSMKRAMLFP 358 (406)
Q Consensus 335 ---~~~~~~~mq~~l~~~~~~~~f~y~ 358 (406)
.+++..+|+++- +...|.|.
T Consensus 451 ~~~~~~~~~~~~~~~----~~~~fsw~ 473 (489)
T PRK14098 451 LYHDEERWEELVLEA----MERDFSWK 473 (489)
T ss_pred HHcCHHHHHHHHHHH----hcCCCChH
Confidence 345555665543 23456553
No 53
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=79.62 E-value=3.4 Score=40.06 Aligned_cols=93 Identities=17% Similarity=0.150 Sum_probs=59.5
Q ss_pred ccHHHhhhccceEEecCC--CCCCchhHHHHHHhCceeEEEeccccCCCCCCC-CCCceEEEecCCChhcHHHHHhCC--
Q 038885 260 TTYYEDMQRAIFCLCPLG--WAPWSPRLVEAVVFGCIPVIIADDIVLPFADAI-PWEEIGMFVAEEDVPKLDTILTSI-- 334 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G--~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~i-dw~~~sv~v~~~~~~~l~~~L~~i-- 334 (406)
.++.+.++.+..+++|.- ..+.+..+.|||.+|| |||.++.-..+ +.+ +.....+.++..+..++.+.+..+
T Consensus 255 ~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~-Pvi~~~~~~~~--~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~ 331 (357)
T cd03795 255 EEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGK-PVISTEIGTGG--SYVNLHGVTGLVVPPGDPAALAEAIRRLLE 331 (357)
T ss_pred HHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCC-CEEecCCCCch--hHHhhCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 446788899999999852 2456678999999975 66666532211 222 224566677777777766666543
Q ss_pred CHHHHHHHHHHhccccccccee
Q 038885 335 PPEVILRKQRLLANPSMKRAML 356 (406)
Q Consensus 335 ~~~~~~~mq~~l~~~~~~~~f~ 356 (406)
.+++..+|+++..+ .+.+.|.
T Consensus 332 ~~~~~~~~~~~~~~-~~~~~~s 352 (357)
T cd03795 332 DPELRERLGEAARE-RAEEEFT 352 (357)
T ss_pred CHHHHHHHHHHHHH-HHHHhcc
Confidence 46667788876654 2344443
No 54
>PHA01630 putative group 1 glycosyl transferase
Probab=78.54 E-value=3.9 Score=40.91 Aligned_cols=40 Identities=15% Similarity=0.326 Sum_probs=32.4
Q ss_pred ccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEec
Q 038885 260 TTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIAD 300 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d 300 (406)
.+..+.++.+..++.|.-.+..+.-+.|||++|| |||.++
T Consensus 201 ~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~-PVIas~ 240 (331)
T PHA01630 201 DDIYSLFAGCDILFYPVRGGAFEIPVIEALALGL-DVVVTE 240 (331)
T ss_pred HHHHHHHHhCCEEEECCccccCChHHHHHHHcCC-CEEEeC
Confidence 4566789999999999766777888999999998 556665
No 55
>PLN02949 transferase, transferring glycosyl groups
Probab=78.07 E-value=4.7 Score=42.31 Aligned_cols=86 Identities=14% Similarity=0.113 Sum_probs=52.6
Q ss_pred ccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCC-CCC-ceEEEecCCChhcHHHHHhCC---
Q 038885 260 TTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAI-PWE-EIGMFVAEEDVPKLDTILTSI--- 334 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~i-dw~-~~sv~v~~~~~~~l~~~L~~i--- 334 (406)
.+..+.|+++.+++.|.-+++.+.-+.|||++||+||.-... =|-++++ ++. .-.-++. .+..++.+.|..+
T Consensus 346 ~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~g--Gp~~eIV~~~~~g~tG~l~-~~~~~la~ai~~ll~~ 422 (463)
T PLN02949 346 RDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSA--GPKMDIVLDEDGQQTGFLA-TTVEEYADAILEVLRM 422 (463)
T ss_pred HHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCC--CCcceeeecCCCCcccccC-CCHHHHHHHHHHHHhC
Confidence 456778899999998887788899999999999987775432 1222222 111 1111111 2555554444432
Q ss_pred CHHHHHHHHHHhcc
Q 038885 335 PPEVILRKQRLLAN 348 (406)
Q Consensus 335 ~~~~~~~mq~~l~~ 348 (406)
++++..+|+++..+
T Consensus 423 ~~~~r~~m~~~ar~ 436 (463)
T PLN02949 423 RETERLEIAAAARK 436 (463)
T ss_pred CHHHHHHHHHHHHH
Confidence 55666778776553
No 56
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=77.43 E-value=3.6 Score=42.09 Aligned_cols=91 Identities=14% Similarity=0.145 Sum_probs=53.6
Q ss_pred cHHHhhhcc--ceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecC-CChhcHHHHHhCC--C
Q 038885 261 TYYEDMQRA--IFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAE-EDVPKLDTILTSI--P 335 (406)
Q Consensus 261 ~y~~~l~~S--~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~-~~~~~l~~~L~~i--~ 335 (406)
+..+.++.+ ...+.|.-..+.+..+.|||++|+ |||.++.--.| ++++=..-.+.++. .+..++.+.|..+ +
T Consensus 301 e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~-PVIas~vgg~~--e~i~~~~~G~l~~~~~~~~~la~~I~~ll~~ 377 (407)
T cd04946 301 EVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGI-PVIATNVGGTP--EIVDNGGNGLLLSKDPTPNELVSSLSKFIDN 377 (407)
T ss_pred HHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCC-CEEeCCCCCcH--HHhcCCCcEEEeCCCCCHHHHHHHHHHHHhC
Confidence 455666543 334446555667888999999995 99988743222 34432323455554 3556555555443 4
Q ss_pred HHHHHHHHHHhcccccccce
Q 038885 336 PEVILRKQRLLANPSMKRAM 355 (406)
Q Consensus 336 ~~~~~~mq~~l~~~~~~~~f 355 (406)
++...+|+++..+ .+...|
T Consensus 378 ~~~~~~m~~~ar~-~~~~~f 396 (407)
T cd04946 378 EEEYQTMREKARE-KWEENF 396 (407)
T ss_pred HHHHHHHHHHHHH-HHHHHc
Confidence 7777888876554 233444
No 57
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=77.02 E-value=6.2 Score=40.82 Aligned_cols=84 Identities=23% Similarity=0.270 Sum_probs=55.0
Q ss_pred cHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCC-CCCC-----ceEEEecCCChhcHHHHHhCC
Q 038885 261 TYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADA-IPWE-----EIGMFVAEEDVPKLDTILTSI 334 (406)
Q Consensus 261 ~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~-idw~-----~~sv~v~~~~~~~l~~~L~~i 334 (406)
...+.++.+.+.+.|.-.++.+....|||++||.||+-... ...+. .|.. .-.+.++..+..++.+.|..+
T Consensus 363 ~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~g---g~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~ 439 (476)
T cd03791 363 LAHLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATG---GLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRA 439 (476)
T ss_pred HHHHHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCC---CccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHH
Confidence 34567899999999988888889999999999998764322 11222 2332 146667777766665555432
Q ss_pred -----CHHHHHHHHHHhc
Q 038885 335 -----PPEVILRKQRLLA 347 (406)
Q Consensus 335 -----~~~~~~~mq~~l~ 347 (406)
.++...+|.++..
T Consensus 440 l~~~~~~~~~~~~~~~~~ 457 (476)
T cd03791 440 LALYRDPEAWRKLQRNAM 457 (476)
T ss_pred HHHHcCHHHHHHHHHHHh
Confidence 2455666666543
No 58
>PLN02939 transferase, transferring glycosyl groups
Probab=75.44 E-value=17 Score=41.58 Aligned_cols=90 Identities=16% Similarity=0.211 Sum_probs=58.1
Q ss_pred HHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCC--------ceEEEecCCChhcHHHHHhC-
Q 038885 263 YEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWE--------EIGMFVAEEDVPKLDTILTS- 333 (406)
Q Consensus 263 ~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~--------~~sv~v~~~~~~~l~~~L~~- 333 (406)
...++.|.++++|.=+.+.+.-+.|||++||+||+.... -++ +-+.|++ .-.+.++..+...+.+.|..
T Consensus 851 h~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vG-GL~-DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rA 928 (977)
T PLN02939 851 HSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTG-GLN-DSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERA 928 (977)
T ss_pred HHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCC-CCc-ceeecCCccccccCCCceEEecCCCHHHHHHHHHHH
Confidence 367899999999988889999999999999999875432 111 1122332 23455666676655544432
Q ss_pred ---C--CHHHHHHHHHHhcccccccceeec
Q 038885 334 ---I--PPEVILRKQRLLANPSMKRAMLFP 358 (406)
Q Consensus 334 ---i--~~~~~~~mq~~l~~~~~~~~f~y~ 358 (406)
+ .++...+|+++. +...|.|.
T Consensus 929 L~~~~~dpe~~~~L~~~a----m~~dFSWe 954 (977)
T PLN02939 929 FNYYKRKPEVWKQLVQKD----MNIDFSWD 954 (977)
T ss_pred HHHhccCHHHHHHHHHHH----HHhcCCHH
Confidence 2 466677776643 34556654
No 59
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=73.53 E-value=5.9 Score=39.44 Aligned_cols=72 Identities=19% Similarity=0.259 Sum_probs=48.5
Q ss_pred cHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhCC
Q 038885 261 TYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSI 334 (406)
Q Consensus 261 ~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i 334 (406)
.+.+.++.+..++.|....+.+.-+.|||++| +|||.++..--+ .+++.=..-.+.++..+..++.+.|..+
T Consensus 250 ~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G-~Pvv~s~~~~g~-~eiv~~~~~G~lv~~~d~~~la~~i~~l 321 (359)
T PRK09922 250 VVQQKIKNVSALLLTSKFEGFPMTLLEAMSYG-IPCISSDCMSGP-RDIIKPGLNGELYTPGNIDEFVGKLNKV 321 (359)
T ss_pred HHHHHHhcCcEEEECCcccCcChHHHHHHHcC-CCEEEeCCCCCh-HHHccCCCceEEECCCCHHHHHHHHHHH
Confidence 34566788899999987778899999999999 678877722212 2333213344556777877766665543
No 60
>PHA01633 putative glycosyl transferase group 1
Probab=72.57 E-value=4.1 Score=40.97 Aligned_cols=41 Identities=20% Similarity=0.261 Sum_probs=35.8
Q ss_pred ccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEecc
Q 038885 260 TTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADD 301 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~ 301 (406)
.+..+.++.+.+.+.|.-.++.+.-+.|||++|| |||.++-
T Consensus 215 ~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~-PVVas~~ 255 (335)
T PHA01633 215 EYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGT-PVIHQLM 255 (335)
T ss_pred HHHHHHHHhCCEEEECCccccCCHHHHHHHHcCC-CEEEccC
Confidence 4466889999999999878888999999999999 9998865
No 61
>KOG2619 consensus Fucosyltransferase [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=72.49 E-value=17 Score=37.14 Aligned_cols=117 Identities=14% Similarity=0.168 Sum_probs=73.5
Q ss_pred CCCCceeeeecccccccCCCCCCCccchhhHHHHHHHhcCCCceEee--cC-------CcccHHHhhhccceEEecCC--
Q 038885 209 DTPRSIFVYFRGLFYDVNNDPEGGYYARGARAAVWENFKNNPLFDIS--TD-------HPTTYYEDMQRAIFCLCPLG-- 277 (406)
Q Consensus 209 ~~~R~~l~~F~G~~~~~~~~~~~~~ys~~iR~~l~~~~~~~~~~~~~--~~-------~~~~y~~~l~~S~FCL~p~G-- 277 (406)
..+++..+.+...+. .+.-|..+++.+...-.+++. |. ......+.+..-||-|.-..
T Consensus 193 ~~k~~~~aw~vSnc~-----------~~~~R~~~~~~L~k~l~iD~YG~c~~~~~~~~~~~~~~~~~s~YKFyLAfENS~ 261 (372)
T KOG2619|consen 193 SAKTKLAAWLVSNCI-----------PRSARLDYYKELMKHLEIDSYGECLRKNANRDPSDCLLETLSHYKFYLAFENSN 261 (372)
T ss_pred ccccceeeeeccccC-----------cchHHHHHHHHHHhhCceeeccccccccccCCCCCcceeecccceEEEEecccC
Confidence 345666666665432 134576777666544333321 21 12456778889999997532
Q ss_pred -CCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecC-CChhcHHHHHhCCCHHHHH
Q 038885 278 -WAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAE-EDVPKLDTILTSIPPEVIL 340 (406)
Q Consensus 278 -~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~-~~~~~l~~~L~~i~~~~~~ 340 (406)
..--+-.|+-|+.+|.|||+++......| ++ .+.-|.|.. ..+.+|...|+.+.+++.+
T Consensus 262 c~DYVTEKfw~al~~gsVPVvlg~~n~e~f---vP-~~SfI~vdDF~s~~ela~ylk~L~~n~~~ 322 (372)
T KOG2619|consen 262 CEDYVTEKFWNALDAGSVPVVLGPPNYENF---VP-PDSFIHVDDFQSPQELAAYLKKLDKNPAA 322 (372)
T ss_pred CcccccHHHHhhhhcCcccEEECCcccccc---CC-CcceEehhhcCCHHHHHHHHHHhhcCHHH
Confidence 23447889999999999999998554443 33 455556644 4577889999988655444
No 62
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=71.44 E-value=14 Score=35.87 Aligned_cols=72 Identities=17% Similarity=0.079 Sum_probs=47.1
Q ss_pred cccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhCC
Q 038885 259 PTTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSI 334 (406)
Q Consensus 259 ~~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i 334 (406)
..+..+.++++.++++|.-.++.+.-+.|||.+||-. |.++.-. ..+.+.= .....+..++..++.+.+..+
T Consensus 257 ~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~Pv-I~s~~~~--~~~~i~~-~~~~~~~~~~~~~~a~~i~~l 328 (358)
T cd03812 257 RNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPC-ILSDTIT--KEVDLTD-LVKFLSLDESPEIWAEEILKL 328 (358)
T ss_pred cCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCCE-EEEcCCc--hhhhhcc-CccEEeCCCCHHHHHHHHHHH
Confidence 4567789999999999987788899999999999965 4455321 2222221 334444445555555555443
No 63
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=69.97 E-value=8.6 Score=39.37 Aligned_cols=85 Identities=14% Similarity=0.119 Sum_probs=51.6
Q ss_pred cccHHHhhhccceEEecCCC---CCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhCC-
Q 038885 259 PTTYYEDMQRAIFCLCPLGW---APWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSI- 334 (406)
Q Consensus 259 ~~~y~~~l~~S~FCL~p~G~---~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i- 334 (406)
.+++.+.|+.+..+++|... .....-++|||++|+ |||.++.-.. .+++.=..-.+.++ +..+|.+.|..+
T Consensus 305 ~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~-PVI~s~~~~~--~eiv~~~~~G~lv~--d~~~la~~i~~ll 379 (415)
T cd03816 305 AEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGL-PVCALDFKCI--DELVKHGENGLVFG--DSEELAEQLIDLL 379 (415)
T ss_pred HHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCC-CEEEeCCCCH--HHHhcCCCCEEEEC--CHHHHHHHHHHHH
Confidence 46788889999988864221 224677999999999 9999874322 23332122233343 555554444332
Q ss_pred ----CHHHHHHHHHHhcc
Q 038885 335 ----PPEVILRKQRLLAN 348 (406)
Q Consensus 335 ----~~~~~~~mq~~l~~ 348 (406)
++++..+|.++..+
T Consensus 380 ~~~~~~~~~~~m~~~~~~ 397 (415)
T cd03816 380 SNFPNRGKLNSLKKGAQE 397 (415)
T ss_pred hcCCCHHHHHHHHHHHHH
Confidence 26777888776653
No 64
>PLN02316 synthase/transferase
Probab=66.70 E-value=8.2 Score=44.47 Aligned_cols=66 Identities=23% Similarity=0.249 Sum_probs=46.3
Q ss_pred HhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCC------------ceEEEecCCChhcHHHHH
Q 038885 264 EDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWE------------EIGMFVAEEDVPKLDTIL 331 (406)
Q Consensus 264 ~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~------------~~sv~v~~~~~~~l~~~L 331 (406)
..++.+.+.++|.=..+.+.-..|||++||+||+-... -+| +-+.|++ .-.+.++..+...|...|
T Consensus 915 ~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vG-GL~-DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL 992 (1036)
T PLN02316 915 LIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTG-GLF-DTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYAL 992 (1036)
T ss_pred HHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCC-CcH-hhccccccccccccccccCCceEEeCCCCHHHHHHHH
Confidence 57899999999998899999999999999999995432 122 1123432 235667777766544433
No 65
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=62.77 E-value=14 Score=36.12 Aligned_cols=82 Identities=13% Similarity=0.123 Sum_probs=48.7
Q ss_pred cHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCC-----CCCCCCceEEEecCCC--hhcHHHHHhC
Q 038885 261 TYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFA-----DAIPWEEIGMFVAEED--VPKLDTILTS 333 (406)
Q Consensus 261 ~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~-----~~idw~~~sv~v~~~~--~~~l~~~L~~ 333 (406)
++.+.|..+..++.+.| +.-++|||.+|+ |||+.+.-.-+-+ +.+.-....+.++..+ ..+|.+.|+.
T Consensus 243 ~~~~~l~~ad~~v~~~g----~~~l~Ea~~~g~-Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ 317 (348)
T TIGR01133 243 NMAAAYAAADLVISRAG----ASTVAELAAAGV-PAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLK 317 (348)
T ss_pred CHHHHHHhCCEEEECCC----hhHHHHHHHcCC-CEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHH
Confidence 67899999999998766 346999999996 6766532100000 1222244455565544 5555544432
Q ss_pred C--CHHHHHHHHHHhc
Q 038885 334 I--PPEVILRKQRLLA 347 (406)
Q Consensus 334 i--~~~~~~~mq~~l~ 347 (406)
+ +++...+|.++..
T Consensus 318 ll~~~~~~~~~~~~~~ 333 (348)
T TIGR01133 318 LLLDPANLEAMAEAAR 333 (348)
T ss_pred HHcCHHHHHHHHHHHH
Confidence 2 4566667776654
No 66
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=61.01 E-value=11 Score=40.61 Aligned_cols=60 Identities=25% Similarity=0.435 Sum_probs=45.2
Q ss_pred ccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCC-C-CCCC-CCCceEEEec
Q 038885 260 TTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLP-F-ADAI-PWEEIGMFVA 320 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lP-f-~~~i-dw~~~sv~v~ 320 (406)
..|.+.++.+.-++.|.-+.+++.-..||+++| +|||.++.--++ + .+++ +-....|.|.
T Consensus 466 ~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G-~PvI~t~~~gf~~~v~E~v~~~~~~gi~V~ 528 (590)
T cd03793 466 LDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMG-IPSITTNLSGFGCFMEEHIEDPESYGIYIV 528 (590)
T ss_pred cchHHHhhhceEEEeccccCCCCcHHHHHHHcC-CCEEEccCcchhhhhHHHhccCCCceEEEe
Confidence 568999999999999998899999999999999 589998864332 0 1222 3334566665
No 67
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=60.01 E-value=27 Score=35.24 Aligned_cols=78 Identities=19% Similarity=0.284 Sum_probs=47.4
Q ss_pred ccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCC------CCCCceEEEecCCChhcHHHHHhC
Q 038885 260 TTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADA------IPWEEIGMFVAEEDVPKLDTILTS 333 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~------idw~~~sv~v~~~~~~~l~~~L~~ 333 (406)
.+..+.|+.|...+.+.| + .-+.|||.+|+ |||+.+. .|-++. ++ ....+.+ .+...|.+.+..
T Consensus 274 ~~~~~l~~aaDv~V~~~g--~--~ti~EAma~g~-PvI~~~~--~pgqe~gn~~~i~~-~g~g~~~--~~~~~la~~i~~ 343 (382)
T PLN02605 274 TNMEEWMGACDCIITKAG--P--GTIAEALIRGL-PIILNGY--IPGQEEGNVPYVVD-NGFGAFS--ESPKEIARIVAE 343 (382)
T ss_pred ccHHHHHHhCCEEEECCC--c--chHHHHHHcCC-CEEEecC--CCccchhhHHHHHh-CCceeec--CCHHHHHHHHHH
Confidence 357788999999888776 2 24899999997 6777653 233331 22 3444443 344444444433
Q ss_pred C---CHHHHHHHHHHhc
Q 038885 334 I---PPEVILRKQRLLA 347 (406)
Q Consensus 334 i---~~~~~~~mq~~l~ 347 (406)
+ .++..++|+++..
T Consensus 344 ll~~~~~~~~~m~~~~~ 360 (382)
T PLN02605 344 WFGDKSDELEAMSENAL 360 (382)
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 2 2667777877654
No 68
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=59.06 E-value=28 Score=30.68 Aligned_cols=41 Identities=17% Similarity=0.037 Sum_probs=31.5
Q ss_pred ccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEecc
Q 038885 260 TTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADD 301 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~ 301 (406)
+.+...+..|..+++|...++++..++|||.+||-. |.++.
T Consensus 173 ~~~~~~~~~~di~l~~~~~e~~~~~~~Eam~~g~pv-i~s~~ 213 (229)
T cd01635 173 ELLALLLAAADVFVLPSLREGFGLVVLEAMACGLPV-IATDV 213 (229)
T ss_pred HHHHHHhhcCCEEEecccccCcChHHHHHHhCCCCE-EEcCC
Confidence 344555556999999998888999999999998755 44543
No 69
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=58.96 E-value=23 Score=40.89 Aligned_cols=92 Identities=15% Similarity=0.179 Sum_probs=59.0
Q ss_pred HHHhhhcc----ceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhCC--C
Q 038885 262 YYEDMQRA----IFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSI--P 335 (406)
Q Consensus 262 y~~~l~~S----~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i--~ 335 (406)
..+.++.+ ..++.|.=..+...-+.|||++|+ |||.++.- ...++|.-..-.+.|+..+...|.+.|..+ +
T Consensus 561 vp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGl-PVVASdvG--G~~EII~~g~nGlLVdP~D~eaLA~AL~~LL~D 637 (1050)
T TIGR02468 561 VPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGL-PMVATKNG--GPVDIHRVLDNGLLVDPHDQQAIADALLKLVAD 637 (1050)
T ss_pred HHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCC-CEEEeCCC--CcHHHhccCCcEEEECCCCHHHHHHHHHHHhhC
Confidence 34455544 355567667788899999999995 89988742 233444334557778888877776666543 3
Q ss_pred HHHHHHHHHHhcccccccceeec
Q 038885 336 PEVILRKQRLLANPSMKRAMLFP 358 (406)
Q Consensus 336 ~~~~~~mq~~l~~~~~~~~f~y~ 358 (406)
++...+|.++..+ .+ ..|.|.
T Consensus 638 pelr~~m~~~gr~-~v-~~FSWe 658 (1050)
T TIGR02468 638 KQLWAECRQNGLK-NI-HLFSWP 658 (1050)
T ss_pred HHHHHHHHHHHHH-HH-HHCCHH
Confidence 5556778776553 22 346553
No 70
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=55.34 E-value=26 Score=37.79 Aligned_cols=65 Identities=15% Similarity=0.093 Sum_probs=45.4
Q ss_pred ccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcH
Q 038885 260 TTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKL 327 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l 327 (406)
.+..+.|..+..++.|.-.++.+.-+.|||.+|| |||.++.--.| +.|.=..-.+.++..+...+
T Consensus 464 ~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~Gl-PVVATdvGG~~--EiV~dG~nG~LVp~~D~~aL 528 (578)
T PRK15490 464 RDVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGV-PVISTPAGGSA--ECFIEGVSGFILDDAQTVNL 528 (578)
T ss_pred hhHHHHHHhCCEEEEcccccCccHHHHHHHHhCC-CEEEeCCCCcH--HHcccCCcEEEECCCChhhH
Confidence 4566778899998888777788999999999999 99988753222 33322344555676664443
No 71
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=54.39 E-value=55 Score=33.20 Aligned_cols=79 Identities=14% Similarity=0.117 Sum_probs=47.8
Q ss_pred ccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCC-----CCceEEEecCCChhcHHHHHhCC
Q 038885 260 TTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIP-----WEEIGMFVAEEDVPKLDTILTSI 334 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~id-----w~~~sv~v~~~~~~~l~~~L~~i 334 (406)
.+..+.|+.|.+++..+| ..-+.||+.+|+ |||+.+. .|-++..+ =..+.+.+. +..++.+.|..+
T Consensus 265 ~~~~~~~~~aDl~I~k~g----g~tl~EA~a~G~-PvI~~~~--~pgqe~~N~~~~~~~G~g~~~~--~~~~l~~~i~~l 335 (391)
T PRK13608 265 KHMNEWMASSQLMITKPG----GITISEGLARCI-PMIFLNP--APGQELENALYFEEKGFGKIAD--TPEEAIKIVASL 335 (391)
T ss_pred chHHHHHHhhhEEEeCCc----hHHHHHHHHhCC-CEEECCC--CCCcchhHHHHHHhCCcEEEeC--CHHHHHHHHHHH
Confidence 356788999999988554 235899999985 8888763 24333211 123444432 333343333322
Q ss_pred --CHHHHHHHHHHhc
Q 038885 335 --PPEVILRKQRLLA 347 (406)
Q Consensus 335 --~~~~~~~mq~~l~ 347 (406)
+++.+.+|+++..
T Consensus 336 l~~~~~~~~m~~~~~ 350 (391)
T PRK13608 336 TNGNEQLTNMISTME 350 (391)
T ss_pred hcCHHHHHHHHHHHH
Confidence 4677888888776
No 72
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=54.03 E-value=25 Score=36.85 Aligned_cols=57 Identities=23% Similarity=0.432 Sum_probs=39.5
Q ss_pred CCCCCCCCCCceEEEEcCCCcCCccccccCCccccCchhhHHHHHHHHccCCc-cCCCcCCCcEEEeecCCccccC
Q 038885 30 DVLEDDPVGKLKVYVYELPSKYNKKLLLKDPRCLTHMFAAEIFMHRFLLSSPV-RTLNPEEADWFYTPIYPTCDLT 104 (406)
Q Consensus 30 ~~~~~~~~~~~kIYVYdlP~~fn~~~l~~~~~~~~~~y~~E~~~~~~L~~S~~-rT~dPeeAdlFyVP~~~~~~~~ 104 (406)
++++++.. ..|||+.-+. |..+++.+|.+.- .|....| .|.++++||+.+|= +|.+.
T Consensus 2 ~~~~~~~~-~~~~~i~t~G-------------C~~N~~dse~~~~-~l~~~G~~~~~~~~~ADvviiN---TC~v~ 59 (449)
T PRK14332 2 QVLEPEKK-LGKVYIETYG-------------CQMNEYDSGIVSS-LMRDAEYSTSNDPENSDIIFLN---TCAIR 59 (449)
T ss_pred CccccccC-CCEEEEEecC-------------CCCCHHHHHHHHH-HHHHCcCEECCCcccCCEEEEE---ccCee
Confidence 45555553 6789988752 6677888887654 4555554 68899999999873 67553
No 73
>PLN00142 sucrose synthase
Probab=53.13 E-value=19 Score=40.50 Aligned_cols=93 Identities=11% Similarity=0.059 Sum_probs=55.5
Q ss_pred HHHhhhc-cceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHh----C--C
Q 038885 262 YYEDMQR-AIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILT----S--I 334 (406)
Q Consensus 262 y~~~l~~-S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~----~--i 334 (406)
....++. +..+++|.=+.+.+.-+.|||++|+ |||.++.--++ ++|.=..-.+.|+..+...+.+.|. . -
T Consensus 659 Lyr~iadaaDVfVlPS~~EgFGLvvLEAMA~Gl-PVVATdvGG~~--EIV~dG~tG~LV~P~D~eaLA~aI~~lLekLl~ 735 (815)
T PLN00142 659 LYRYIADTKGAFVQPALYEAFGLTVVEAMTCGL-PTFATCQGGPA--EIIVDGVSGFHIDPYHGDEAANKIADFFEKCKE 735 (815)
T ss_pred HHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCC-CEEEcCCCCHH--HHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcC
Confidence 3344443 3455678777888999999999997 67776642222 2332244566777777666554443 2 2
Q ss_pred CHHHHHHHHHHhcccccccceeec
Q 038885 335 PPEVILRKQRLLANPSMKRAMLFP 358 (406)
Q Consensus 335 ~~~~~~~mq~~l~~~~~~~~f~y~ 358 (406)
+++...+|.++..+ ++...|.|.
T Consensus 736 Dp~lr~~mg~~Ar~-rv~e~FSWe 758 (815)
T PLN00142 736 DPSYWNKISDAGLQ-RIYECYTWK 758 (815)
T ss_pred CHHHHHHHHHHHHH-HHHHhCCHH
Confidence 45566677665443 344566653
No 74
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=52.24 E-value=19 Score=36.72 Aligned_cols=105 Identities=18% Similarity=0.140 Sum_probs=58.0
Q ss_pred cHHHhhhccceEEecCCC-CCCchhHHHHHHhCceeEEEeccccCCCCCC---CCCCceEEEecCCChhcHHHHHhCC--
Q 038885 261 TYYEDMQRAIFCLCPLGW-APWSPRLVEAVVFGCIPVIIADDIVLPFADA---IPWEEIGMFVAEEDVPKLDTILTSI-- 334 (406)
Q Consensus 261 ~y~~~l~~S~FCL~p~G~-~~~s~rl~dal~~GCIPVii~d~~~lPf~~~---idw~~~sv~v~~~~~~~l~~~L~~i-- 334 (406)
+....++.+..|+++... .....-+.||+.+|| |||.+++.. -+.+. +.=..+.+. ..|..+|.+.|..+
T Consensus 312 el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~-PVI~g~~~~-~~~e~~~~~~~~g~~~~--~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 312 ELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGV-PVISGPHTF-NFKEIFERLLQAGAAIQ--VEDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCC-CEEECCCcc-CHHHHHHHHHHCCCeEE--ECCHHHHHHHHHHHhc
Confidence 466788889887775332 224556999999996 788765421 11121 111233333 34555554444432
Q ss_pred CHHHHHHHHHHhcccccccceeecCCCCcccHHHHHHHHHHhHCC
Q 038885 335 PPEVILRKQRLLANPSMKRAMLFPQPAQPGDAFHQILNGLARKLP 379 (406)
Q Consensus 335 ~~~~~~~mq~~l~~~~~~~~f~y~~~~~~~DAf~~il~~L~~r~~ 379 (406)
+++...+|.++-.+. +.. ..++...+++.+..-++
T Consensus 388 ~~~~~~~m~~~a~~~-~~~---------~~~~~~~~~~~l~~~l~ 422 (425)
T PRK05749 388 DPDARQAYGEAGVAF-LKQ---------NQGALQRTLQLLEPYLP 422 (425)
T ss_pred CHHHHHHHHHHHHHH-HHh---------CccHHHHHHHHHHHhcc
Confidence 455666776654421 111 13688888888765443
No 75
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=50.55 E-value=28 Score=36.21 Aligned_cols=52 Identities=17% Similarity=0.226 Sum_probs=37.6
Q ss_pred CCCCceEEEEcCCCcCCccccccCCccccCchhhHHHHHHHHccCCc-cCCCcCCCcEEEeecCCccccC
Q 038885 36 PVGKLKVYVYELPSKYNKKLLLKDPRCLTHMFAAEIFMHRFLLSSPV-RTLNPEEADWFYTPIYPTCDLT 104 (406)
Q Consensus 36 ~~~~~kIYVYdlP~~fn~~~l~~~~~~~~~~y~~E~~~~~~L~~S~~-rT~dPeeAdlFyVP~~~~~~~~ 104 (406)
+..+.|||+.-+. |..+++-+|.+... |.+..| .|+++++||+++|= +|.+.
T Consensus 4 ~~~~~~~~i~t~G-------------C~~N~~dse~~~~~-l~~~G~~~~~~~~~aD~ivin---TC~v~ 56 (440)
T PRK14862 4 MTAAPKIGFVSLG-------------CPKALVDSERILTQ-LRAEGYEISPSYDGADLVIVN---TCGFI 56 (440)
T ss_pred CCCCCEEEEEEcC-------------CCCcHHHHHHHHHH-HHHCcCEECCCcccCCEEEEe---ccccc
Confidence 4556789998752 67788888876654 444554 78899999999873 77654
No 76
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=48.87 E-value=80 Score=32.18 Aligned_cols=92 Identities=18% Similarity=0.248 Sum_probs=55.3
Q ss_pred eEeecCCc-ccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCC-CCCCCceEE-EecCCChhc--
Q 038885 252 FDISTDHP-TTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFAD-AIPWEEIGM-FVAEEDVPK-- 326 (406)
Q Consensus 252 ~~~~~~~~-~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~-~idw~~~sv-~v~~~~~~~-- 326 (406)
+....+-| ++..+.+.++.+.+.-.=+...+....|+|++|.|||+=... =|--| +++|..=.. ++.+++..-
T Consensus 339 v~F~~N~Py~~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIpi~h~Sg--GP~lDIV~~~~G~~tGFla~t~~EYaE 416 (465)
T KOG1387|consen 339 VQFEKNVPYEKLVELLGKATIGVHTMWNEHFGISVVEYMAAGLIPIVHNSG--GPLLDIVTPWDGETTGFLAPTDEEYAE 416 (465)
T ss_pred eEEEecCCHHHHHHHhccceeehhhhhhhhcchhHHHHHhcCceEEEeCCC--CCceeeeeccCCccceeecCChHHHHH
Confidence 33333334 346788899999998877788899999999999999875432 12222 344543222 333333333
Q ss_pred -HHHHHhCCCHHHHHHHHHHh
Q 038885 327 -LDTILTSIPPEVILRKQRLL 346 (406)
Q Consensus 327 -l~~~L~~i~~~~~~~mq~~l 346 (406)
+.+|+.. +.++...||++-
T Consensus 417 ~iLkIv~~-~~~~r~~~r~~A 436 (465)
T KOG1387|consen 417 AILKIVKL-NYDERNMMRRNA 436 (465)
T ss_pred HHHHHHHc-CHHHHHHHHHHH
Confidence 3444433 444466677653
No 77
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=48.15 E-value=42 Score=33.08 Aligned_cols=83 Identities=13% Similarity=0.187 Sum_probs=49.7
Q ss_pred ccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCC------CCCCCCCCceEEEecCCC--hhcHHHHH
Q 038885 260 TTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLP------FADAIPWEEIGMFVAEED--VPKLDTIL 331 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lP------f~~~idw~~~sv~v~~~~--~~~l~~~L 331 (406)
.++.+.|..+..+++..| ..-++|||.+|+--|++....... .+.+.+ ....+.++.++ ...|.+.+
T Consensus 244 ~~~~~~~~~~d~~i~~~g----~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~-~~~g~~~~~~~~~~~~l~~~i 318 (357)
T PRK00726 244 DDMAAAYAAADLVICRAG----ASTVAELAAAGLPAILVPLPHAADDHQTANARALVD-AGAALLIPQSDLTPEKLAEKL 318 (357)
T ss_pred hhHHHHHHhCCEEEECCC----HHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHH-CCCEEEEEcccCCHHHHHHHH
Confidence 356788899999998766 345999999997555543211110 011223 34566777666 44555555
Q ss_pred hCC--CHHHHHHHHHHhc
Q 038885 332 TSI--PPEVILRKQRLLA 347 (406)
Q Consensus 332 ~~i--~~~~~~~mq~~l~ 347 (406)
+.+ +++...+|+++..
T Consensus 319 ~~ll~~~~~~~~~~~~~~ 336 (357)
T PRK00726 319 LELLSDPERLEAMAEAAR 336 (357)
T ss_pred HHHHcCHHHHHHHHHHHH
Confidence 433 3566677877654
No 78
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=48.12 E-value=34 Score=35.99 Aligned_cols=58 Identities=28% Similarity=0.365 Sum_probs=40.6
Q ss_pred CCCCCCCCCCceEEEEcCCCcCCccccccCCccccCchhhHHHHHHHHccCCc-cCCCcCCCcEEEeecCCccccC
Q 038885 30 DVLEDDPVGKLKVYVYELPSKYNKKLLLKDPRCLTHMFAAEIFMHRFLLSSPV-RTLNPEEADWFYTPIYPTCDLT 104 (406)
Q Consensus 30 ~~~~~~~~~~~kIYVYdlP~~fn~~~l~~~~~~~~~~y~~E~~~~~~L~~S~~-rT~dPeeAdlFyVP~~~~~~~~ 104 (406)
-+.++.+.+..|||+.-+. |..+++-+|.+.- .|....| .|.++++||+.+|= +|.+.
T Consensus 14 ~~~~~~~~~~~~~~i~t~G-------------C~~N~~dse~~~~-~l~~~G~~~~~~~~~ADiviiN---TC~v~ 72 (467)
T PRK14329 14 LVKEAKPKNTKKLFIESYG-------------CQMNFADSEIVAS-ILQMAGYNTTENLEEADLVLVN---TCSIR 72 (467)
T ss_pred ccccccCCCCCEEEEEecC-------------CCCcHHHHHHHHH-HHHHCcCEECCCcccCCEEEEe---Cccee
Confidence 4555666666679999762 6778888887654 4454444 78889999999873 67553
No 79
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=45.34 E-value=18 Score=36.26 Aligned_cols=67 Identities=12% Similarity=0.199 Sum_probs=40.7
Q ss_pred ccHHHhhhccceEEecCCCC-----CCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhC
Q 038885 260 TTYYEDMQRAIFCLCPLGWA-----PWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTS 333 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~-----~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~ 333 (406)
.+....++.+..|+.|.-.+ .....++|+|++|+ |||..+ +.+......-.+.+ ..+..++.+.|+.
T Consensus 265 ~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~-PVVat~-----~~~~~~~~~~~~~~-~~d~~~~~~ai~~ 336 (373)
T cd04950 265 KELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGK-PVVATP-----LPEVRRYEDEVVLI-ADDPEEFVAAIEK 336 (373)
T ss_pred HHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCC-CEEecC-----cHHHHhhcCcEEEe-CCCHHHHHHHHHH
Confidence 45778899999999995322 23467999999997 677553 22333323323333 3455555544443
No 80
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=44.21 E-value=22 Score=37.21 Aligned_cols=84 Identities=13% Similarity=-0.009 Sum_probs=57.6
Q ss_pred cccHHHhhhccceEEecCCCCCCchhHHHHHHhCce---eEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhC--
Q 038885 259 PTTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCI---PVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTS-- 333 (406)
Q Consensus 259 ~~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCI---PVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~-- 333 (406)
..+....++.+.-++.|.-..+...-..|||.+||= |||+++..-.+-. ..-.+.|+..+...+.+.|..
T Consensus 351 ~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~-----~~~g~lv~p~d~~~la~ai~~~l 425 (460)
T cd03788 351 REELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE-----LSGALLVNPYDIDEVADAIHRAL 425 (460)
T ss_pred HHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEeccccchhh-----cCCCEEECCCCHHHHHHHHHHHH
Confidence 456788899999999987767778889999999996 6888874322211 133677788887776665543
Q ss_pred -CCHHHHHHHHHHhc
Q 038885 334 -IPPEVILRKQRLLA 347 (406)
Q Consensus 334 -i~~~~~~~mq~~l~ 347 (406)
.++++..+|.++..
T Consensus 426 ~~~~~e~~~~~~~~~ 440 (460)
T cd03788 426 TMPLEERRERHRKLR 440 (460)
T ss_pred cCCHHHHHHHHHHHH
Confidence 35555555554444
No 81
>PF09919 DUF2149: Uncharacterized conserved protein (DUF2149); InterPro: IPR018676 This family of conserved hypothetical proteins has no known function.
Probab=42.48 E-value=30 Score=28.11 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=19.6
Q ss_pred ChHHHHHHHHhhhhccCCcccc
Q 038885 1 MWVTAIALLLAFVSADNTPKIE 22 (406)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (406)
|-|.|.|||+|.+++-|++++-
T Consensus 11 ~LVfav~llvalv~~~n~~~~~ 32 (92)
T PF09919_consen 11 MLVFAVGLLVALVMSWNMQEVF 32 (92)
T ss_pred HHHHHHHHHHHHHHhcCCcccc
Confidence 4689999999999999999855
No 82
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=41.97 E-value=52 Score=34.50 Aligned_cols=83 Identities=13% Similarity=0.067 Sum_probs=56.2
Q ss_pred cccHHHhhhccceEEecCCCCCCchhHHHHHHhCcee----EEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhC-
Q 038885 259 PTTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIP----VIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTS- 333 (406)
Q Consensus 259 ~~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIP----Vii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~- 333 (406)
..+....++.+.-|++|.=..+...-..|||++|+ | ||+++..-.+ +.+. -++.|+..|...+.+.|..
T Consensus 346 ~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~-P~~g~vVlS~~~G~~--~~l~---~gllVnP~d~~~lA~aI~~a 419 (456)
T TIGR02400 346 REELMALYRAADVGLVTPLRDGMNLVAKEYVAAQD-PKDGVLILSEFAGAA--QELN---GALLVNPYDIDGMADAIARA 419 (456)
T ss_pred HHHHHHHHHhCcEEEECccccccCccHHHHHHhcC-CCCceEEEeCCCCCh--HHhC---CcEEECCCCHHHHHHHHHHH
Confidence 35678889999999998766777888999999996 7 8888743221 1222 3677888888776665543
Q ss_pred --CCHHHHHHHHHHhc
Q 038885 334 --IPPEVILRKQRLLA 347 (406)
Q Consensus 334 --i~~~~~~~mq~~l~ 347 (406)
.+.++..++.+++.
T Consensus 420 L~~~~~er~~r~~~~~ 435 (456)
T TIGR02400 420 LTMPLEEREERHRAMM 435 (456)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 35555444444333
No 83
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=38.86 E-value=49 Score=37.20 Aligned_cols=86 Identities=8% Similarity=0.001 Sum_probs=54.6
Q ss_pred cceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhCC------CHHHHHHH
Q 038885 269 AIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSI------PPEVILRK 342 (406)
Q Consensus 269 S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i------~~~~~~~m 342 (406)
+..+++|.=+.+.+.-+.|||++||-. |.++.=-+ .+.|.=..-.+.|+..+...+.+.|..+ +++...+|
T Consensus 644 adVfV~PS~~EpFGLvvLEAMAcGlPV-VAT~~GG~--~EiV~dg~tGfLVdp~D~eaLA~aL~~ll~kll~dp~~~~~m 720 (784)
T TIGR02470 644 KGIFVQPALYEAFGLTVLEAMTCGLPT-FATRFGGP--LEIIQDGVSGFHIDPYHGEEAAEKIVDFFEKCDEDPSYWQKI 720 (784)
T ss_pred CcEEEECCcccCCCHHHHHHHHcCCCE-EEcCCCCH--HHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 346677877888999999999999855 44442111 1223224456677887877665555432 56666777
Q ss_pred HHHhcccccccceeec
Q 038885 343 QRLLANPSMKRAMLFP 358 (406)
Q Consensus 343 q~~l~~~~~~~~f~y~ 358 (406)
.++..+ .+..+|.|.
T Consensus 721 s~~a~~-rV~~~FSW~ 735 (784)
T TIGR02470 721 SQGGLQ-RIYEKYTWK 735 (784)
T ss_pred HHHHHH-HHHHhCCHH
Confidence 776543 355677764
No 84
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=37.17 E-value=47 Score=34.61 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=35.0
Q ss_pred ceEEEEcCCCcCCccccccCCccccCchhhHHHHHHHHccCCc-cCCCcCCCcEEEeecCCccccC
Q 038885 40 LKVYVYELPSKYNKKLLLKDPRCLTHMFAAEIFMHRFLLSSPV-RTLNPEEADWFYTPIYPTCDLT 104 (406)
Q Consensus 40 ~kIYVYdlP~~fn~~~l~~~~~~~~~~y~~E~~~~~~L~~S~~-rT~dPeeAdlFyVP~~~~~~~~ 104 (406)
-|||+.-+. |..+++-+|.+... |.+..| .|+++++||+++|= +|.+.
T Consensus 7 ~~~~i~t~G-------------C~~N~~ds~~~~~~-l~~~G~~~~~~~~~ADiiiiN---TC~v~ 55 (448)
T PRK14333 7 RSYWITTFG-------------CQMNKADSERMAGI-LEDMGYQWAEDELQADLVLYN---TCTIR 55 (448)
T ss_pred cEEEEEEcC-------------CCCcHHHHHHHHHH-HHHCcCEECCCcccCCEEEEE---eeeee
Confidence 378888752 77788888876644 555555 79999999999873 77654
No 85
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=36.48 E-value=38 Score=35.88 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=34.4
Q ss_pred HHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEec
Q 038885 262 YYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIAD 300 (406)
Q Consensus 262 y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d 300 (406)
+.+.++.|.+=|+|.=..|..---+.||+.|||||+-..
T Consensus 362 a~~i~agaD~~lmPSrfEPcGL~ql~amryGtvpIv~~t 400 (487)
T COG0297 362 AHLIYAGADVILMPSRFEPCGLTQLYAMRYGTLPIVRET 400 (487)
T ss_pred HHHHHhcCCEEEeCCcCcCCcHHHHHHHHcCCcceEccc
Confidence 557788999999998888999999999999999998753
No 86
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=36.42 E-value=61 Score=33.86 Aligned_cols=48 Identities=23% Similarity=0.333 Sum_probs=34.4
Q ss_pred ceEEEEcCCCcCCccccccCCccccCchhhHHHHHHHHccCCc-cCCCcCCCcEEEeecCCccccC
Q 038885 40 LKVYVYELPSKYNKKLLLKDPRCLTHMFAAEIFMHRFLLSSPV-RTLNPEEADWFYTPIYPTCDLT 104 (406)
Q Consensus 40 ~kIYVYdlP~~fn~~~l~~~~~~~~~~y~~E~~~~~~L~~S~~-rT~dPeeAdlFyVP~~~~~~~~ 104 (406)
.|||+.-+ -|..+++.+|.+... |.+..| .|+++++||+++|= +|.+.
T Consensus 7 ~~~~i~tl-------------GC~~N~~dse~~~~~-l~~~G~~~~~~~~~ADviiiN---TC~v~ 55 (445)
T PRK14340 7 RKFYIHTF-------------GCQMNQADSEIITAL-LQDEGYVPAASEEDADIVLLN---TCAVR 55 (445)
T ss_pred cEEEEEec-------------CCCCcHHHHHHHHHH-HHHCcCEECCCcccCCEEEEE---eeeee
Confidence 46888765 267788888876654 444444 78899999999873 77654
No 87
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=34.82 E-value=69 Score=33.56 Aligned_cols=48 Identities=21% Similarity=0.411 Sum_probs=34.4
Q ss_pred ceEEEEcCCCcCCccccccCCccccCchhhHHHHHHHHccCCc-cCCCcCCCcEEEeecCCccccC
Q 038885 40 LKVYVYELPSKYNKKLLLKDPRCLTHMFAAEIFMHRFLLSSPV-RTLNPEEADWFYTPIYPTCDLT 104 (406)
Q Consensus 40 ~kIYVYdlP~~fn~~~l~~~~~~~~~~y~~E~~~~~~L~~S~~-rT~dPeeAdlFyVP~~~~~~~~ 104 (406)
.|||+.-+ -|..+++-+|.+.-. |....+ .|+++++||+++| -+|.+.
T Consensus 21 ~~~~i~t~-------------GC~~N~~dse~~~~~-l~~~G~~~~~~~~~AD~~ii---NTC~v~ 69 (459)
T PRK14338 21 RRYYVWTV-------------GCQMNVSDSERLEAA-LQGVGYSPAERPEDADFIVL---NSCSVR 69 (459)
T ss_pred CEEEEEec-------------CCCCCHHHHHHHHHH-HHHCcCEECCCcccCCEEEE---ecccee
Confidence 46888764 267788888876654 444444 7999999999987 377654
No 88
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=33.35 E-value=60 Score=31.64 Aligned_cols=82 Identities=12% Similarity=0.143 Sum_probs=49.2
Q ss_pred ccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccc-------cCCCCCCCCCCceEEEecCC--ChhcHHHH
Q 038885 260 TTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDI-------VLPFADAIPWEEIGMFVAEE--DVPKLDTI 330 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~-------~lPf~~~idw~~~sv~v~~~--~~~~l~~~ 330 (406)
.++.+.|..+.+.+++.| ..-+.|||.+|+- ||+.+.- ..+.+.+.+ ....+.++.. +..+|.+.
T Consensus 244 ~~~~~~l~~ad~~v~~sg----~~t~~Eam~~G~P-vv~~~~~~~~~~~~~~~~~~l~~-~g~g~~v~~~~~~~~~l~~~ 317 (350)
T cd03785 244 DDMAAAYAAADLVISRAG----ASTVAELAALGLP-AILIPLPYAADDHQTANARALVK-AGAAVLIPQEELTPERLAAA 317 (350)
T ss_pred hhHHHHHHhcCEEEECCC----HhHHHHHHHhCCC-EEEeecCCCCCCcHHHhHHHHHh-CCCEEEEecCCCCHHHHHHH
Confidence 466788899999998776 2348999999975 5543211 011111222 3456666654 56666555
Q ss_pred HhCC--CHHHHHHHHHHhc
Q 038885 331 LTSI--PPEVILRKQRLLA 347 (406)
Q Consensus 331 L~~i--~~~~~~~mq~~l~ 347 (406)
|+.+ +++...+|+++..
T Consensus 318 i~~ll~~~~~~~~~~~~~~ 336 (350)
T cd03785 318 LLELLSDPERLKAMAEAAR 336 (350)
T ss_pred HHHHhcCHHHHHHHHHHHH
Confidence 5433 4566677776554
No 89
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=32.23 E-value=94 Score=33.05 Aligned_cols=53 Identities=19% Similarity=0.226 Sum_probs=36.3
Q ss_pred CCCCCceEEEEcCCCcCCccccccCCccccCchhhHHHHHHHHccCCc-cCCCcCCCcEEEeecCCccccC
Q 038885 35 DPVGKLKVYVYELPSKYNKKLLLKDPRCLTHMFAAEIFMHRFLLSSPV-RTLNPEEADWFYTPIYPTCDLT 104 (406)
Q Consensus 35 ~~~~~~kIYVYdlP~~fn~~~l~~~~~~~~~~y~~E~~~~~~L~~S~~-rT~dPeeAdlFyVP~~~~~~~~ 104 (406)
++.+..||||.-+ -|..+++.+|.+.-. |.+..| .|+++++||+++| -+|.+.
T Consensus 9 ~~~~~~~~~i~T~-------------GC~~N~~dse~~~~~-L~~~G~~~~~~~e~ADvvvi---NTCtv~ 62 (502)
T PRK14326 9 AARGARTYQVRTY-------------GCQMNVHDSERLAGL-LEAAGYVRAAEGQDADVVVF---NTCAVR 62 (502)
T ss_pred cCCCCCEEEEEec-------------CCCCcHHHHHHHHHH-HHHCCCEECCCcCCCCEEEE---ECCCee
Confidence 3344457888865 267788888876544 455455 6888999999987 367653
No 90
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=31.58 E-value=67 Score=33.37 Aligned_cols=39 Identities=33% Similarity=0.296 Sum_probs=28.4
Q ss_pred cccCchhhHHHHHHHHccCCc-cCCCcCCCcEEEeecCCccccC
Q 038885 62 CLTHMFAAEIFMHRFLLSSPV-RTLNPEEADWFYTPIYPTCDLT 104 (406)
Q Consensus 62 ~~~~~y~~E~~~~~~L~~S~~-rT~dPeeAdlFyVP~~~~~~~~ 104 (406)
|..+|+-+|.+... |.+..| .|+++++||+++|= +|.+.
T Consensus 11 C~~N~~ds~~~~~~-l~~~G~~~~~~~~~ADv~iiN---TC~v~ 50 (439)
T PRK14328 11 CQMNEEDSEKLAGM-LKSMGYERTENREEADIIIFN---TCCVR 50 (439)
T ss_pred CCCCHHHHHHHHHH-HHHCcCEECCCcCcCCEEEEe---cccEe
Confidence 67788888876654 444444 78899999999873 67653
No 91
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=30.82 E-value=1e+02 Score=26.64 Aligned_cols=42 Identities=17% Similarity=0.277 Sum_probs=30.0
Q ss_pred cHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccc
Q 038885 261 TYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDI 302 (406)
Q Consensus 261 ~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~ 302 (406)
+|...-.+.+..||.+|.-........|...|..-|||.++.
T Consensus 40 d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~ 81 (143)
T cd02133 40 DFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNV 81 (143)
T ss_pred ccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecC
Confidence 344333467888998886444556778999999999997543
No 92
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=30.78 E-value=49 Score=34.61 Aligned_cols=40 Identities=15% Similarity=0.312 Sum_probs=28.8
Q ss_pred cccCchhhHHHHHHHHccCCccCCCcCCCcEEEeecCCccccC
Q 038885 62 CLTHMFAAEIFMHRFLLSSPVRTLNPEEADWFYTPIYPTCDLT 104 (406)
Q Consensus 62 ~~~~~y~~E~~~~~~L~~S~~rT~dPeeAdlFyVP~~~~~~~~ 104 (406)
|..+++-+|.+........--.|.++++||+.+| -+|.+.
T Consensus 10 C~~N~~dse~~~~~l~~~G~~~~~~~~~ADv~ii---NTC~v~ 49 (455)
T PRK14335 10 CQMNVAESASMEQLLLARGWTKAVDAETCDVLII---NTCSVR 49 (455)
T ss_pred CCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEE---ecccee
Confidence 7778888887665443333347999999999987 377654
No 93
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=30.06 E-value=50 Score=30.46 Aligned_cols=41 Identities=27% Similarity=0.229 Sum_probs=31.2
Q ss_pred ccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEecc
Q 038885 260 TTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADD 301 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~ 301 (406)
....+.++.+...+.|.-......-+.||+.+| +|||.++.
T Consensus 268 ~~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g-~pvi~~~~ 308 (381)
T COG0438 268 EELAELLASADVFVLPSLSEGFGLVLLEAMAAG-TPVIASDV 308 (381)
T ss_pred HHHHHHHHhCCEEEeccccccchHHHHHHHhcC-CcEEECCC
Confidence 455667777899999954444455599999999 99988764
No 94
>PF15240 Pro-rich: Proline-rich
Probab=29.30 E-value=34 Score=31.23 Aligned_cols=18 Identities=39% Similarity=0.314 Sum_probs=14.6
Q ss_pred hHHHHHHHHhhhhccCCc
Q 038885 2 WVTAIALLLAFVSADNTP 19 (406)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (406)
+|...|.|||+-||.++=
T Consensus 3 lVLLSvALLALSSAQ~~d 20 (179)
T PF15240_consen 3 LVLLSVALLALSSAQSTD 20 (179)
T ss_pred hHHHHHHHHHhhhccccc
Confidence 566779999999998864
No 95
>KOG3185 consensus Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=29.23 E-value=42 Score=31.04 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=27.9
Q ss_pred hccceEEecCCCCCCchhHHHHHHhCceeEEEe
Q 038885 267 QRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIA 299 (406)
Q Consensus 267 ~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~ 299 (406)
...+|||+-.|-+..-..+|||=..+.|||+-.
T Consensus 19 LTNtYclva~ggS~nfys~~e~el~d~IPiV~t 51 (245)
T KOG3185|consen 19 LTNTYCLVAIGGSENFYSAFEAELGDVIPIVHT 51 (245)
T ss_pred cccceEEEEecCchhHHHHHHHHhcCccceEEe
Confidence 355899999888878888999999999999854
No 96
>PRK10125 putative glycosyl transferase; Provisional
Probab=28.32 E-value=63 Score=33.09 Aligned_cols=66 Identities=20% Similarity=0.220 Sum_probs=48.9
Q ss_pred cHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHH
Q 038885 261 TYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTI 330 (406)
Q Consensus 261 ~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~ 330 (406)
+..+.++.+...+.|.-.++...-+.|||++|| |||.+|-=-.| ++++= .-.+.++..|...|.+.
T Consensus 299 ~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~-PVVat~~gG~~--Eiv~~-~~G~lv~~~d~~~La~~ 364 (405)
T PRK10125 299 KLMSALNQMDALVFSSRVDNYPLILCEALSIGV-PVIATHSDAAR--EVLQK-SGGKTVSEEEVLQLAQL 364 (405)
T ss_pred HHHHHHHhCCEEEECCccccCcCHHHHHHHcCC-CEEEeCCCChH--HhEeC-CcEEEECCCCHHHHHhc
Confidence 456778888888888878888999999999995 88887653333 34432 34778888888777653
No 97
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=27.76 E-value=32 Score=34.34 Aligned_cols=70 Identities=13% Similarity=0.081 Sum_probs=63.6
Q ss_pred CCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCChhcHHHHHhCCCHHHHHHHHHH
Q 038885 276 LGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTILTSIPPEVILRKQRL 345 (406)
Q Consensus 276 ~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L~~i~~~~~~~mq~~ 345 (406)
.|-++..+.+.+.+.---|+|=++.--.--|.++++++++-|....+....|.+.=++++++++.++.+.
T Consensus 145 ~GLs~~Gk~lV~~~N~LgIiiDlSH~s~kt~~Dvl~~s~~PviaSHSN~~al~~h~RNl~D~qlkaI~~~ 214 (313)
T COG2355 145 GGLTPFGKELVREMNELGIIIDLSHLSDKTFWDVLDLSKAPVVASHSNARALVDHPRNLSDEQLKAIAET 214 (313)
T ss_pred CCCCHHHHHHHHHHHhcCCEEEecccCCccHHHHHhccCCceEEecCCchhccCCCCCCCHHHHHHHHhc
Confidence 5778889999999999999998888777889999999999999999999999999999999999999875
No 98
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=27.24 E-value=62 Score=33.46 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=29.2
Q ss_pred cccCchhhHHHHHHHHccCCccCCCcCCCcEEEeecCCccccC
Q 038885 62 CLTHMFAAEIFMHRFLLSSPVRTLNPEEADWFYTPIYPTCDLT 104 (406)
Q Consensus 62 ~~~~~y~~E~~~~~~L~~S~~rT~dPeeAdlFyVP~~~~~~~~ 104 (406)
|..+++-+|.+........--.|+++++||+++| -+|.+.
T Consensus 11 C~~N~~dse~~~~~l~~~G~~~~~~~~~AD~vii---NTC~v~ 50 (418)
T PRK14336 11 CQMNQAESERLGRLFELWGYSLADKAEDAELVLV---NSCVVR 50 (418)
T ss_pred CCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEE---ecccEe
Confidence 6778888887765544444447999999999987 377654
No 99
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.71 E-value=68 Score=33.57 Aligned_cols=39 Identities=26% Similarity=0.405 Sum_probs=28.6
Q ss_pred cccCchhhHHHHHHHHccCC--ccCCCcCCCcEEEeecCCccccC
Q 038885 62 CLTHMFAAEIFMHRFLLSSP--VRTLNPEEADWFYTPIYPTCDLT 104 (406)
Q Consensus 62 ~~~~~y~~E~~~~~~L~~S~--~rT~dPeeAdlFyVP~~~~~~~~ 104 (406)
|..+.|.+|.+.-. |.... -.|+||+|||+.+| -+|.+.
T Consensus 12 C~~N~~DSe~m~~~-L~~~G~~~~~~~~~eADvvii---NTC~V~ 52 (437)
T COG0621 12 CQMNLYDSERMAGL-LEAAGYEELVEDPEEADVVII---NTCAVR 52 (437)
T ss_pred CCccHHHHHHHHHH-HHHcCCccccCCcccCCEEEE---ecCeee
Confidence 67788888876544 44434 48999999999987 377653
No 100
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=26.69 E-value=93 Score=32.33 Aligned_cols=48 Identities=23% Similarity=0.362 Sum_probs=33.6
Q ss_pred eEEEEcCCCcCCccccccCCccccCchhhHHHHHHHHccCCccCCCcCCCcEEEeecCCccccC
Q 038885 41 KVYVYELPSKYNKKLLLKDPRCLTHMFAAEIFMHRFLLSSPVRTLNPEEADWFYTPIYPTCDLT 104 (406)
Q Consensus 41 kIYVYdlP~~fn~~~l~~~~~~~~~~y~~E~~~~~~L~~S~~rT~dPeeAdlFyVP~~~~~~~~ 104 (406)
|||+.-+ -|..+++-+|.+........--.|+++++||+++|= +|.+.
T Consensus 5 ~~~i~t~-------------GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aDvviin---TC~v~ 52 (444)
T PRK14325 5 KLYIKTY-------------GCQMNEYDSSKMADLLGAEGYELTDDPEEADLILLN---TCSIR 52 (444)
T ss_pred EEEEEEc-------------CCCCcHHHHHHHHHHHHHCcCEECCCcCCCCEEEEE---cceee
Confidence 6777765 267788888876655434444478999999999873 66543
No 101
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=25.48 E-value=1e+02 Score=29.71 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=27.4
Q ss_pred ccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEe
Q 038885 260 TTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIA 299 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~ 299 (406)
.+..+.|..|...++..|- -++|++.+| +|+|+-
T Consensus 233 ~~m~~lm~~aDl~Is~~G~-----T~~E~~a~g-~P~i~i 266 (279)
T TIGR03590 233 ENMAELMNEADLAIGAAGS-----TSWERCCLG-LPSLAI 266 (279)
T ss_pred HHHHHHHHHCCEEEECCch-----HHHHHHHcC-CCEEEE
Confidence 4577899999999997662 299999999 677753
No 102
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.09 E-value=78 Score=32.91 Aligned_cols=39 Identities=21% Similarity=0.377 Sum_probs=28.6
Q ss_pred cccCchhhHHHHHHHHccCCc-cCCCcCCCcEEEeecCCccccC
Q 038885 62 CLTHMFAAEIFMHRFLLSSPV-RTLNPEEADWFYTPIYPTCDLT 104 (406)
Q Consensus 62 ~~~~~y~~E~~~~~~L~~S~~-rT~dPeeAdlFyVP~~~~~~~~ 104 (406)
|..+++-+|.+.-. |.+..| .|+++++||+.+| -+|.+.
T Consensus 10 C~~N~~ds~~~~~~-l~~~G~~~~~~~~~ADi~ii---NTC~v~ 49 (440)
T PRK14334 10 CQMNEYDTHLVESE-LVSLGAEIVDSVDEADFVLV---NTCAVR 49 (440)
T ss_pred CCCcHHHHHHHHHH-HHHCcCEECCCcccCCEEEE---ecccee
Confidence 67788888876654 444454 7889999999987 377654
No 103
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=23.51 E-value=1.9e+02 Score=32.68 Aligned_cols=67 Identities=6% Similarity=-0.048 Sum_probs=47.9
Q ss_pred ccHHHhhhccceEEecCCCCCCchhHHHHHHhCcee----EEEeccccCCCCCCCCCCceEEEecCCChhcHHHHH
Q 038885 260 TTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIP----VIIADDIVLPFADAIPWEEIGMFVAEEDVPKLDTIL 331 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIP----Vii~d~~~lPf~~~idw~~~sv~v~~~~~~~l~~~L 331 (406)
.++...++.+.-|++|+=..+...-..|+|++|+ | +|+++---.+ +.+ ..-++.|+..|...+-+.|
T Consensus 367 ~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~-p~~gvlVlSe~~G~~--~~l--~~~allVnP~D~~~lA~AI 437 (797)
T PLN03063 367 NYLCALYAITDVMLVTSLRDGMNLVSYEFVACQK-AKKGVLVLSEFAGAG--QSL--GAGALLVNPWNITEVSSAI 437 (797)
T ss_pred HHHHHHHHhCCEEEeCccccccCcchhhHheeec-CCCCCEEeeCCcCch--hhh--cCCeEEECCCCHHHHHHHH
Confidence 4567889999999999866667778999999998 5 7777532111 112 3458889888887765544
No 104
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=23.48 E-value=1.1e+02 Score=31.48 Aligned_cols=34 Identities=29% Similarity=0.288 Sum_probs=25.6
Q ss_pred cccCchhhHHHHHHHHccCCc-cCCCcCCCcEEEee
Q 038885 62 CLTHMFAAEIFMHRFLLSSPV-RTLNPEEADWFYTP 96 (406)
Q Consensus 62 ~~~~~y~~E~~~~~~L~~S~~-rT~dPeeAdlFyVP 96 (406)
|..+++.+|.+... |....+ .|+++++||++.|-
T Consensus 9 C~~N~~ds~~~~~~-l~~~g~~~~~~~~~aD~v~in 43 (429)
T TIGR00089 9 CQMNEADSEIMAGL-LKEAGYEVTDDPEEADVIIIN 43 (429)
T ss_pred CCCcHHHHHHHHHH-HHHCcCEECCCcccCCEEEEe
Confidence 67788888876544 455555 78899999999874
No 105
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=22.31 E-value=1.2e+02 Score=33.62 Aligned_cols=61 Identities=15% Similarity=0.045 Sum_probs=40.8
Q ss_pred ccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEeccccCCCCCCCCCCceEEEecCCC
Q 038885 260 TTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGMFVAEED 323 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~~~lPf~~~idw~~~sv~v~~~~ 323 (406)
.+....|..+...+.|.-.++.+.-+.|||.+|| |||.++.--. .++|.=..-.+.++..+
T Consensus 583 ~dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~-PVVat~~gG~--~EiV~dg~~GlLv~~~d 643 (694)
T PRK15179 583 RRVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGV-PVVTTLAGGA--GEAVQEGVTGLTLPADT 643 (694)
T ss_pred chHHHHHHhcCEEEeccccccchHHHHHHHHcCC-eEEEECCCCh--HHHccCCCCEEEeCCCC
Confidence 3566778888888888666778899999999996 7777764222 23332233455566544
No 106
>PLN02275 transferase, transferring glycosyl groups
Probab=22.04 E-value=95 Score=31.08 Aligned_cols=41 Identities=15% Similarity=0.065 Sum_probs=30.4
Q ss_pred cccHHHhhhccceEEecCCC---CCCchhHHHHHHhCceeEEEec
Q 038885 259 PTTYYEDMQRAIFCLCPLGW---APWSPRLVEAVVFGCIPVIIAD 300 (406)
Q Consensus 259 ~~~y~~~l~~S~FCL~p~G~---~~~s~rl~dal~~GCIPVii~d 300 (406)
.+++.+.|+.+..|+.|... ......++|||++|+ |||.++
T Consensus 297 ~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~-PVVa~~ 340 (371)
T PLN02275 297 AEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGL-PVCAVS 340 (371)
T ss_pred HHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCC-CEEEec
Confidence 46778889999998876321 234667999999996 788765
No 107
>PF07038 DUF1324: Protein of unknown function (DUF1324); InterPro: IPR009757 This family consists of several Circovirus proteins of around 60 residues in length. The function of this family is unknown.
Probab=21.51 E-value=57 Score=23.14 Aligned_cols=39 Identities=31% Similarity=0.640 Sum_probs=27.6
Q ss_pred hccceEEecCCC-CCCchhHHHHHHhCceeEEEeccccCCCCC
Q 038885 267 QRAIFCLCPLGW-APWSPRLVEAVVFGCIPVIIADDIVLPFAD 308 (406)
Q Consensus 267 ~~S~FCL~p~G~-~~~s~rl~dal~~GCIPVii~d~~~lPf~~ 308 (406)
-+|+||+.|--. +..++|-|-.-..||----+. .||.++
T Consensus 7 fqsrfcifpltfkssasprkfltnvtgccsatvt---rlplsn 46 (59)
T PF07038_consen 7 FQSRFCIFPLTFKSSASPRKFLTNVTGCCSATVT---RLPLSN 46 (59)
T ss_pred EeeeeEEEEeeeccCCChHHHhhcccceeeeeEE---eccchh
Confidence 579999999755 345788888888899765442 456543
No 108
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=21.35 E-value=95 Score=32.24 Aligned_cols=39 Identities=23% Similarity=0.253 Sum_probs=28.2
Q ss_pred cccCchhhHHHHHHHHccCCc-cCCCcCCCcEEEeecCCccccC
Q 038885 62 CLTHMFAAEIFMHRFLLSSPV-RTLNPEEADWFYTPIYPTCDLT 104 (406)
Q Consensus 62 ~~~~~y~~E~~~~~~L~~S~~-rT~dPeeAdlFyVP~~~~~~~~ 104 (406)
|..+++-+|.+... |.+..+ .|+++++||+.+| -+|.+.
T Consensus 10 C~~N~~ds~~~~~~-l~~~G~~~~~~~~~aDviii---NTC~v~ 49 (437)
T PRK14331 10 CQMNFNDSEKIKGI-LQTLGYEPADDWEEADLILV---NTCTIR 49 (437)
T ss_pred CCCcHHHHHHHHHH-HHHCcCEECCCcccCCEEEE---eCccee
Confidence 67788888876654 454544 7889999999987 367653
No 109
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=20.80 E-value=90 Score=31.39 Aligned_cols=41 Identities=15% Similarity=0.054 Sum_probs=33.2
Q ss_pred ccHHHhhhccceEEecCCCCCCchhHHHHHHhCceeEEEecc
Q 038885 260 TTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADD 301 (406)
Q Consensus 260 ~~y~~~l~~S~FCL~p~G~~~~s~rl~dal~~GCIPVii~d~ 301 (406)
.+..+.++.+..++.|.-.+.....+.|||++|| |||.++.
T Consensus 261 ~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~-PVI~s~~ 301 (398)
T cd03796 261 ERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGL-LVVSTRV 301 (398)
T ss_pred HHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCC-CEEECCC
Confidence 5678889999999998766677789999999998 4566654
Done!